Query 023877
Match_columns 276
No_of_seqs 256 out of 1792
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:18:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2804 Phosphorylcholine tran 100.0 3.2E-69 6.8E-74 496.4 14.7 227 15-256 58-284 (348)
2 PLN02413 choline-phosphate cyt 100.0 9.1E-61 2E-65 440.4 23.7 232 9-246 16-247 (294)
3 cd02174 CCT CTP:phosphocholine 100.0 1.5E-40 3.2E-45 283.0 18.5 150 19-170 1-150 (150)
4 cd02173 ECT CTP:phosphoethanol 100.0 9.8E-38 2.1E-42 266.1 18.5 149 20-170 2-152 (152)
5 PLN02406 ethanolamine-phosphat 100.0 3E-37 6.4E-42 298.7 16.2 163 9-175 242-407 (418)
6 KOG2803 Choline phosphate cyti 100.0 1.9E-36 4.2E-41 280.8 11.7 138 15-156 3-140 (358)
7 PTZ00308 ethanolamine-phosphat 100.0 1.2E-35 2.6E-40 283.4 17.5 156 16-173 188-345 (353)
8 COG0615 TagD Cytidylyltransfer 100.0 6.3E-35 1.4E-39 245.3 13.1 132 20-157 1-139 (140)
9 PLN02406 ethanolamine-phosphat 100.0 7.9E-33 1.7E-37 268.0 16.7 138 16-157 49-190 (418)
10 PTZ00308 ethanolamine-phosphat 100.0 1E-31 2.2E-36 256.4 17.5 146 11-160 2-147 (353)
11 KOG2803 Choline phosphate cyti 100.0 7.1E-29 1.5E-33 230.5 11.9 160 9-175 189-350 (358)
12 cd02170 cytidylyltransferase c 99.9 7.9E-26 1.7E-30 187.2 16.4 133 20-157 1-135 (136)
13 cd02172 RfaE_N N-terminal doma 99.9 9.5E-26 2.1E-30 190.3 16.3 137 20-160 4-144 (144)
14 TIGR02199 rfaE_dom_II rfaE bif 99.9 2.1E-25 4.6E-30 188.1 15.4 131 20-157 11-144 (144)
15 TIGR01518 g3p_cytidyltrns glyc 99.9 6.9E-25 1.5E-29 180.0 13.6 123 23-155 1-125 (125)
16 cd02171 G3P_Cytidylyltransfera 99.9 4E-24 8.6E-29 175.6 15.4 128 20-157 1-128 (129)
17 PRK11316 bifunctional heptose 99.9 4.7E-23 1E-27 201.1 15.5 131 20-156 340-472 (473)
18 COG2870 RfaE ADP-heptose synth 99.9 3.3E-23 7.2E-28 198.7 12.6 132 20-158 332-466 (467)
19 PRK00777 phosphopantetheine ad 99.8 9.1E-20 2E-24 155.8 12.8 130 20-159 1-146 (153)
20 PRK00168 coaD phosphopantethei 99.8 1.7E-18 3.6E-23 148.2 13.6 128 20-158 1-138 (159)
21 TIGR01527 arch_NMN_Atrans nico 99.8 2.7E-18 5.9E-23 148.6 12.7 121 22-158 1-136 (165)
22 cd02039 cytidylyltransferase_l 99.7 5E-17 1.1E-21 132.4 11.2 128 22-154 1-143 (143)
23 cd02163 PPAT Phosphopantethein 99.7 9.8E-17 2.1E-21 136.5 12.1 127 22-159 1-137 (153)
24 PF01467 CTP_transf_2: Cytidyl 99.7 2E-17 4.4E-22 135.4 7.6 127 24-154 1-157 (157)
25 PRK01170 phosphopantetheine ad 99.7 2.4E-16 5.1E-21 149.2 12.3 149 22-190 2-164 (322)
26 TIGR01510 coaD_prev_kdtB pante 99.7 9.7E-16 2.1E-20 130.5 13.1 127 22-159 1-137 (155)
27 cd02166 NMNAT_Archaea Nicotina 99.7 6.3E-16 1.4E-20 133.0 11.8 120 22-157 1-137 (163)
28 cd02064 FAD_synthetase_N FAD s 99.7 1.5E-15 3.2E-20 132.1 13.3 148 23-172 2-172 (180)
29 PRK13964 coaD phosphopantethei 99.6 1.8E-14 3.9E-19 121.9 12.7 92 20-118 1-94 (140)
30 COG0669 CoaD Phosphopantethein 99.6 6.9E-15 1.5E-19 125.8 9.1 91 20-117 2-93 (159)
31 TIGR00125 cyt_tran_rel cytidyl 99.6 5E-15 1.1E-19 107.6 7.1 65 22-88 1-65 (66)
32 PRK00071 nadD nicotinic acid m 99.6 8.1E-14 1.8E-18 123.1 14.8 103 18-123 2-118 (203)
33 PRK01153 nicotinamide-nucleoti 99.5 6.7E-14 1.4E-18 122.0 12.8 123 22-158 2-139 (174)
34 PRK05627 bifunctional riboflav 99.5 1.7E-13 3.7E-18 129.0 16.1 146 22-173 15-188 (305)
35 cd02165 NMNAT Nicotinamide/nic 99.5 1.6E-13 3.5E-18 120.0 12.8 131 22-157 1-170 (192)
36 cd02168 NMNAT_Nudix Nicotinami 99.5 5.2E-14 1.1E-18 123.4 8.6 125 23-157 2-144 (181)
37 PRK05379 bifunctional nicotina 99.5 8.6E-14 1.9E-18 132.4 10.4 128 18-158 4-150 (340)
38 TIGR00482 nicotinate (nicotina 99.5 3.2E-13 6.8E-18 118.6 12.8 97 24-123 1-111 (193)
39 cd02164 PPAT_CoAS phosphopante 99.5 1.1E-13 2.5E-18 117.1 9.3 124 22-153 1-142 (143)
40 cd02167 NMNAT_NadR Nicotinamid 99.5 4.1E-13 9E-18 115.2 12.5 127 23-160 2-151 (158)
41 PRK07152 nadD putative nicotin 99.5 1.8E-12 3.8E-17 123.3 17.4 141 20-165 1-180 (342)
42 PRK06973 nicotinic acid mononu 99.5 1.4E-12 3.1E-17 119.3 14.8 123 14-142 16-156 (243)
43 COG1057 NadD Nicotinic acid mo 99.5 7.9E-13 1.7E-17 117.6 12.6 135 19-158 2-174 (197)
44 PRK08887 nicotinic acid mononu 99.4 1.5E-12 3.3E-17 113.2 12.5 130 20-158 2-149 (174)
45 PRK13793 nicotinamide-nucleoti 99.3 2.8E-12 6.1E-17 114.0 8.8 61 21-85 5-66 (196)
46 COG1019 Predicted nucleotidylt 99.3 8.9E-12 1.9E-16 106.4 10.5 128 18-154 3-145 (158)
47 PRK07143 hypothetical protein; 99.3 5.6E-11 1.2E-15 110.9 16.5 149 21-175 16-179 (279)
48 PLN02388 phosphopantetheine ad 99.3 2.1E-11 4.6E-16 106.9 12.8 133 19-159 18-168 (177)
49 PRK13671 hypothetical protein; 99.3 4.7E-11 1E-15 112.3 12.4 89 23-115 3-102 (298)
50 PRK08099 bifunctional DNA-bind 99.2 2.1E-10 4.6E-15 111.6 13.1 132 18-160 50-208 (399)
51 cd02156 nt_trans nucleotidyl t 99.2 1.8E-11 4E-16 97.2 4.2 57 23-83 2-58 (105)
52 COG1056 NadR Nicotinamide mono 99.2 1.4E-10 3.1E-15 101.2 9.7 127 19-157 2-140 (172)
53 TIGR01526 nadR_NMN_Atrans nico 99.2 3.9E-10 8.4E-15 106.9 13.5 65 20-88 1-66 (325)
54 cd02169 Citrate_lyase_ligase C 99.1 1.1E-09 2.5E-14 102.9 14.7 132 18-160 112-282 (297)
55 cd09286 NMNAT_Eukarya Nicotina 99.1 3.5E-10 7.7E-15 102.2 10.9 64 22-89 2-72 (225)
56 smart00764 Citrate_ly_lig Citr 99.1 1.3E-09 2.7E-14 95.9 13.2 122 26-158 5-165 (182)
57 TIGR00124 cit_ly_ligase [citra 99.1 1.6E-09 3.4E-14 103.4 12.3 125 20-157 139-308 (332)
58 PLN02945 nicotinamide-nucleoti 99.0 3.6E-09 7.8E-14 96.1 13.3 68 17-86 19-90 (236)
59 PF05636 HIGH_NTase1: HIGH Nuc 98.9 1.8E-09 3.8E-14 105.0 5.8 91 20-114 1-102 (388)
60 TIGR00083 ribF riboflavin kina 98.8 1.1E-07 2.3E-12 89.3 13.5 147 23-173 1-171 (288)
61 PRK13670 hypothetical protein; 98.7 1E-07 2.3E-12 92.7 9.4 92 20-115 1-103 (388)
62 COG0196 RibF FAD synthase [Coe 98.6 5.2E-07 1.1E-11 85.4 12.0 151 20-173 15-188 (304)
63 PF06574 FAD_syn: FAD syntheta 98.5 1.6E-07 3.5E-12 80.6 6.0 127 20-149 5-156 (157)
64 KOG3351 Predicted nucleotidylt 98.5 5.6E-07 1.2E-11 82.7 8.6 103 12-118 134-244 (293)
65 PF08218 Citrate_ly_lig: Citra 98.5 1.5E-06 3.2E-11 76.5 10.3 118 28-158 7-165 (182)
66 COG1323 Predicted nucleotidylt 98.3 1.8E-06 3.9E-11 83.3 8.5 91 20-114 1-102 (358)
67 KOG3199 Nicotinamide mononucle 97.7 0.00022 4.8E-09 64.4 9.4 121 17-140 5-162 (234)
68 COG3053 CitC Citrate lyase syn 97.2 0.0065 1.4E-07 57.7 12.5 132 17-157 142-315 (352)
69 TIGR00018 panC pantoate--beta- 96.7 0.0058 1.2E-07 57.6 7.4 63 23-91 27-92 (282)
70 PLN02660 pantoate--beta-alanin 96.4 0.0098 2.1E-07 56.1 7.5 65 22-92 25-92 (284)
71 PRK00380 panC pantoate--beta-a 96.3 0.0095 2.1E-07 56.0 6.5 64 23-92 27-93 (281)
72 cd00560 PanC Pantoate-beta-ala 95.9 0.021 4.5E-07 53.6 6.8 63 23-91 27-92 (277)
73 TIGR00339 sopT ATP sulphurylas 94.9 0.22 4.8E-06 48.8 10.3 91 21-116 184-289 (383)
74 PF02569 Pantoate_ligase: Pant 94.1 0.12 2.6E-06 48.7 6.2 62 27-91 28-92 (280)
75 PRK13477 bifunctional pantoate 94.0 0.12 2.5E-06 52.6 6.4 66 23-92 22-91 (512)
76 COG2870 RfaE ADP-heptose synth 87.5 0.18 3.8E-06 50.0 0.1 49 209-257 12-75 (467)
77 COG0414 PanC Panthothenate syn 85.6 1.2 2.6E-05 42.1 4.5 65 23-91 24-92 (285)
78 TIGR02198 rfaE_dom_I rfaE bifu 81.3 0.84 1.8E-05 41.9 1.6 55 209-263 9-78 (315)
79 KOG3042 Panthothenate syntheta 77.5 3.7 8.1E-05 37.8 4.5 40 19-61 23-62 (283)
80 cd01940 Fructoselysine_kinase_ 76.0 1.1 2.5E-05 39.8 0.8 47 209-260 1-50 (264)
81 PRK11316 bifunctional heptose 69.9 2.2 4.9E-05 41.9 1.3 56 207-262 10-80 (473)
82 cd01174 ribokinase Ribokinase 65.9 4.3 9.3E-05 36.5 2.2 54 210-263 2-67 (292)
83 PLN02341 pfkB-type carbohydrat 64.7 1.9 4.2E-05 43.0 -0.3 29 19-47 413-441 (470)
84 PRK10992 iron-sulfur cluster r 61.0 29 0.00063 31.4 6.6 82 86-169 8-93 (220)
85 PF00294 PfkB: pfkB family car 59.9 3.8 8.1E-05 36.8 0.7 51 209-259 3-63 (301)
86 COG1433 Uncharacterized conser 59.0 36 0.00077 28.3 6.3 49 98-157 57-106 (121)
87 PF02579 Nitro_FeMo-Co: Dinitr 57.8 44 0.00095 24.9 6.2 48 98-156 45-93 (94)
88 PRK09813 fructoselysine 6-kina 56.5 7 0.00015 34.9 1.8 45 210-259 3-50 (260)
89 cd01941 YeiC_kinase_like YeiC- 56.2 7.2 0.00016 35.0 1.9 50 211-260 3-63 (288)
90 TIGR03652 FeS_repair_RIC iron- 55.6 22 0.00049 31.8 4.9 72 98-169 11-89 (216)
91 cd01945 ribokinase_group_B Rib 50.9 10 0.00022 34.0 2.0 53 211-263 3-67 (284)
92 COG2846 Regulator of cell morp 50.8 9.8 0.00021 34.6 1.8 72 98-169 18-94 (221)
93 PF01747 ATP-sulfurylase: ATP- 50.5 58 0.0013 29.6 6.8 86 23-115 23-124 (215)
94 cd00517 ATPS ATP-sulfurylase. 50.1 53 0.0011 32.1 6.8 89 21-115 157-261 (353)
95 PRK11613 folP dihydropteroate 50.0 2.3E+02 0.005 26.8 12.1 161 23-196 19-208 (282)
96 cd01942 ribokinase_group_A Rib 49.6 13 0.00029 33.1 2.5 53 211-263 3-67 (279)
97 PF05957 DUF883: Bacterial pro 48.8 49 0.0011 25.6 5.3 14 263-276 81-94 (94)
98 cd00739 DHPS DHPS subgroup of 48.8 2.2E+02 0.0048 26.2 13.8 150 37-197 24-196 (257)
99 cd01166 KdgK 2-keto-3-deoxyglu 48.6 13 0.00029 33.3 2.4 51 210-260 2-59 (294)
100 COG0275 Predicted S-adenosylme 48.3 1.8E+02 0.0038 28.2 9.8 94 124-223 147-258 (314)
101 COG2046 MET3 ATP sulfurylase ( 46.4 60 0.0013 32.2 6.5 88 20-114 183-285 (397)
102 TIGR03492 conserved hypothetic 45.3 78 0.0017 30.8 7.3 86 19-119 93-191 (396)
103 cd01167 bac_FRK Fructokinases 44.3 15 0.00034 33.0 2.1 50 210-259 2-55 (295)
104 TIGR02026 BchE magnesium-proto 44.3 2.5E+02 0.0054 28.2 10.8 131 25-163 276-428 (497)
105 cd01939 Ketohexokinase Ketohex 42.5 15 0.00033 33.3 1.7 55 211-265 3-69 (290)
106 PRK14536 cysS cysteinyl-tRNA s 39.5 21 0.00045 36.4 2.3 31 17-47 20-58 (490)
107 PRK12418 cysteinyl-tRNA synthe 39.1 52 0.0011 32.5 4.9 29 19-47 8-44 (384)
108 cd01172 RfaE_like RfaE encodes 38.0 23 0.00049 32.1 2.1 54 210-263 2-70 (304)
109 cd00851 MTH1175 This uncharact 37.6 1.2E+02 0.0025 23.0 5.8 45 98-153 55-100 (103)
110 COG0162 TyrS Tyrosyl-tRNA synt 37.5 35 0.00076 33.9 3.5 135 20-174 32-190 (401)
111 cd01947 Guanosine_kinase_like 37.4 18 0.0004 32.1 1.4 51 210-260 2-64 (265)
112 cd01164 FruK_PfkB_like 1-phosp 37.3 24 0.00052 31.9 2.2 31 227-257 28-61 (289)
113 TIGR00467 lysS_arch lysyl-tRNA 36.8 1E+02 0.0022 31.6 6.8 38 22-59 20-65 (515)
114 PRK09954 putative kinase; Prov 35.9 18 0.0004 34.2 1.2 55 209-263 59-124 (362)
115 PRK10404 hypothetical protein; 35.3 1.3E+02 0.0028 24.1 5.9 14 263-276 88-101 (101)
116 PRK13753 dihydropteroate synth 35.1 4E+02 0.0086 25.3 12.9 150 37-197 25-199 (279)
117 COG0826 Collagenase and relate 34.9 2.3E+02 0.005 27.5 8.6 66 85-157 92-158 (347)
118 PLN02946 cysteine-tRNA ligase 34.8 57 0.0012 33.8 4.6 41 17-57 77-126 (557)
119 TIGR03471 HpnJ hopanoid biosyn 34.5 4E+02 0.0087 26.4 10.5 119 38-164 288-434 (472)
120 PRK13276 cell wall biosynthesi 34.4 32 0.00069 31.6 2.5 80 88-169 10-96 (224)
121 COG1701 Uncharacterized protei 34.0 2.7E+02 0.006 25.8 8.3 61 105-175 152-221 (256)
122 PRK09850 pseudouridine kinase; 33.6 28 0.00061 32.1 2.0 56 209-264 6-72 (313)
123 cd01937 ribokinase_group_D Rib 33.3 19 0.00042 31.8 0.9 44 210-256 2-48 (254)
124 PRK14535 cysS cysteinyl-tRNA s 32.6 67 0.0015 34.3 4.8 42 16-57 244-294 (699)
125 PRK11142 ribokinase; Provision 32.5 25 0.00054 31.9 1.5 50 209-258 4-65 (306)
126 PRK04149 sat sulfate adenylylt 32.1 1E+02 0.0022 30.6 5.7 88 20-115 186-289 (391)
127 PTZ00292 ribokinase; Provision 31.8 31 0.00067 31.9 2.0 51 209-259 17-79 (326)
128 PRK00260 cysS cysteinyl-tRNA s 31.6 67 0.0014 32.2 4.4 39 19-57 22-69 (463)
129 PRK13111 trpA tryptophan synth 30.5 4.4E+02 0.0095 24.4 9.4 117 24-158 93-221 (258)
130 cd00674 LysRS_core_class_I cat 30.4 1.9E+02 0.0041 28.2 7.2 39 21-60 20-66 (353)
131 PRK00124 hypothetical protein; 30.3 3.6E+02 0.0078 23.3 10.3 99 86-198 45-146 (151)
132 TIGR00435 cysS cysteinyl-tRNA 29.3 78 0.0017 31.8 4.5 39 19-57 20-67 (465)
133 PF02100 ODC_AZ: Ornithine dec 28.9 1.1E+02 0.0023 24.8 4.4 63 35-113 42-105 (108)
134 PRK13848 conjugal transfer pro 28.6 96 0.0021 25.0 3.9 32 182-213 2-33 (98)
135 TIGR03248 galactar-dH20 galact 28.1 56 0.0012 33.5 3.3 131 110-256 271-425 (507)
136 cd00672 CysRS_core catalytic c 27.5 85 0.0018 28.1 4.0 41 19-60 19-67 (213)
137 PLN02323 probable fructokinase 27.1 66 0.0014 29.8 3.3 56 209-264 12-75 (330)
138 PF01406 tRNA-synt_1e: tRNA sy 27.1 43 0.00093 32.1 2.1 42 16-57 4-54 (300)
139 cd01138 FeuA Periplasmic bindi 27.0 4.2E+02 0.0092 23.1 8.6 40 94-141 54-93 (248)
140 KOG0149 Predicted RNA-binding 26.2 1E+02 0.0022 28.8 4.2 71 16-90 8-78 (247)
141 PF02639 DUF188: Uncharacteriz 26.0 3.9E+02 0.0084 22.3 12.7 98 84-195 27-127 (130)
142 PTZ00399 cysteinyl-tRNA-synthe 24.9 43 0.00094 35.2 1.8 40 18-57 58-107 (651)
143 PRK09434 aminoimidazole ribosi 24.0 58 0.0013 29.6 2.3 48 209-259 4-55 (304)
144 PF06023 DUF911: Archaeal prot 24.0 4.6E+02 0.0099 25.1 8.3 103 162-271 93-216 (289)
145 TIGR00762 DegV EDD domain prot 22.8 2E+02 0.0044 26.4 5.7 63 89-154 3-70 (275)
146 COG5481 Uncharacterized conser 22.6 1.5E+02 0.0031 22.1 3.7 40 157-198 21-60 (67)
147 TIGR01496 DHPS dihydropteroate 22.5 6.1E+02 0.013 23.3 12.9 138 34-183 20-178 (257)
148 TIGR02152 D_ribokin_bact ribok 22.3 1.1E+02 0.0024 27.4 3.8 29 231-259 27-58 (293)
149 COG5570 Uncharacterized small 22.1 79 0.0017 22.9 2.1 28 171-198 28-55 (57)
150 PRK13761 hypothetical protein; 21.8 5.2E+02 0.011 24.2 7.9 61 106-175 150-218 (248)
151 PF10881 DUF2726: Protein of u 21.6 4.2E+02 0.0091 21.1 9.6 29 129-157 95-124 (126)
152 PF12153 CAP18_C: LPS binding 21.3 1.5E+02 0.0032 18.7 3.0 21 199-219 4-24 (28)
153 PRK14534 cysS cysteinyl-tRNA s 21.1 66 0.0014 32.8 2.2 29 19-47 20-56 (481)
154 COG2102 Predicted ATPases of P 21.1 55 0.0012 30.1 1.5 142 21-175 3-152 (223)
155 PF13483 Lactamase_B_3: Beta-l 21.1 1.7E+02 0.0037 24.1 4.5 55 21-84 98-155 (163)
156 COG0215 CysS Cysteinyl-tRNA sy 20.8 50 0.0011 33.5 1.3 29 21-49 23-59 (464)
157 TIGR00715 precor6x_red precorr 20.7 4.5E+02 0.0098 24.3 7.5 55 87-144 175-233 (256)
158 KOG4175 Tryptophan synthase al 20.6 1E+02 0.0023 28.4 3.1 61 23-83 98-170 (268)
No 1
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=100.00 E-value=3.2e-69 Score=496.39 Aligned_cols=227 Identities=60% Similarity=0.981 Sum_probs=204.9
Q ss_pred CCCCCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcceEeeCCC
Q 023877 15 APSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAP 94 (276)
Q Consensus 15 ~~~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~Vi~~~p 94 (276)
.|..||+|||++|+||+||.||+++|+|||++|||.|||||||+|+.+|++||++||+++||+|.|+||||||+||+++|
T Consensus 58 ~p~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~AP 137 (348)
T KOG2804|consen 58 LPTDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAP 137 (348)
T ss_pred CCCCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHHhhHHHHHHHhhcCCCcc
Q 023877 95 WVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSRK 174 (276)
Q Consensus 95 ~~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~y~~y~~Rnl~rg~~~~ 174 (276)
|++|++||++|+||+|+|+++||... ..+|+|+.+|+.|+|+.++||+||||||||.||+++|+.|++|||+||||++
T Consensus 138 W~lt~EFL~~HKIDfVAHDdIPY~s~--gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD~YvrRNL~RGys~k 215 (348)
T KOG2804|consen 138 WTLTPEFLEKHKIDFVAHDDIPYVSA--GSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDYDVYVRRNLARGYSAK 215 (348)
T ss_pred ccccHHHHHhcccceeeccCccccCC--CchhHHHHHHHhcccccccccCCccHHHHHHHHHHhHHHHHHhhhcccCCHH
Confidence 99999999999999999999999853 5689999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCccccchhhHHhhhhhcCcceeEEEE
Q 023877 175 DLGVSYVKEKRLRVNMKLKKLQEKVKQQQERVGEKVFALLCHSIKAFCTFPFPFPVFVFLDASWRAFDLSYGIQTRLLLV 254 (276)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~f~gg~~~~~~~~~g~~~~~~~~ 254 (276)
||||||+++++|+++++|++|++++|.+++++++++.. ++..+. +.|++|++ +|+..||.++.+...
T Consensus 216 eLnVsfl~~kk~~~~~k~~~lk~~vk~~~e~~~~~~~~----l~~kW~-----e~s~e~i~----~fle~f~~~~~~n~~ 282 (348)
T KOG2804|consen 216 ELNVSFLKEKKLRLQNKVDELKEKVKEQQEKVKEFSRD----LIQKWE-----EKSREFIA----GFLELFGKGGALNAF 282 (348)
T ss_pred hcchHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHH-----HhHHHHHH----HHHHHhccccchhhh
Confidence 99999999999999999999999999999999977322 333222 34566666 566666666654444
Q ss_pred ee
Q 023877 255 LK 256 (276)
Q Consensus 255 ~~ 256 (276)
+.
T Consensus 283 ~~ 284 (348)
T KOG2804|consen 283 DD 284 (348)
T ss_pred Hh
Confidence 44
No 2
>PLN02413 choline-phosphate cytidylyltransferase
Probab=100.00 E-value=9.1e-61 Score=440.39 Aligned_cols=232 Identities=78% Similarity=1.197 Sum_probs=214.3
Q ss_pred CCCCCCCCCCCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcce
Q 023877 9 SNSTDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDE 88 (276)
Q Consensus 9 ~~~~~~~~~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~ 88 (276)
+..+++++..++++||++|+||+||+||+++|++|+++||+++|||||++|+.+++.||+|+++++||+++|++|+|||+
T Consensus 16 ~~~~~~~~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~acKyVDe 95 (294)
T PLN02413 16 SATPSSSPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCKWVDE 95 (294)
T ss_pred cCCCCCCCCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHHhcccccE
Confidence 35577788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCcchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHHhhHHHHHHHhh
Q 023877 89 VIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLD 168 (276)
Q Consensus 89 Vi~~~p~~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~y~~y~~Rnl~ 168 (276)
||+++||.++.+||++++||+++||+++|.++.+.+.|.|+++|+.|+|..++|++++|||+||+||+++|+.|++||++
T Consensus 96 VV~~aP~~~t~efI~~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~y~~Y~~Rn~~ 175 (294)
T PLN02413 96 VIPDAPWVITQEFLDKHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLA 175 (294)
T ss_pred EeeCCCccccHHHHHHhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876556788999999999999999999999999999999999999999999
Q ss_pred cCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccccCCCCCccccchhhHHhhhhhcC
Q 023877 169 RGYSRKDLGVSYVKEKRLRVNMKLKKLQEKVKQQQERVGEKVFALLCHSIKAFCTFPFPFPVFVFLDASWRAFDLSYG 246 (276)
Q Consensus 169 rg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~f~gg~~~~~~~~~g 246 (276)
||+|++||||||+|+++|+++++|++|++++++++++++++++.++++....-..|. +.++++++ +||..|+
T Consensus 176 rg~~~~~l~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~--~~~~~~~~----~f~~~f~ 247 (294)
T PLN02413 176 RGYSRKDLGVSYVKEKRLRVNMGLKKLREKVKEQQEKVGEKIQTVAKTAGMHRNEWV--ENADRWVA----GFLEKFE 247 (294)
T ss_pred hcCCHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--HhhHHHHH----HHHHHHH
Confidence 999999999999999999999999999999999999999999999988776644444 55666766 5555554
No 3
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=100.00 E-value=1.5e-40 Score=282.97 Aligned_cols=150 Identities=62% Similarity=1.031 Sum_probs=141.2
Q ss_pred CCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcceEeeCCCCcch
Q 023877 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVT 98 (276)
Q Consensus 19 r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~Vi~~~p~~~t 98 (276)
++++||++|+|||||.||+++|++|+++||+|+|||||++|+++.++||+|++|++||+++|++|+|||+|++.+||.++
T Consensus 1 ~~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~ 80 (150)
T cd02174 1 RPVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDEVVEGAPYVTT 80 (150)
T ss_pred CCeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhcCCCCeEEECCCCCCh
Confidence 46799999999999999999999999998779999999999999988988999999999999999999999999999988
Q ss_pred HHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHHhhHHHHHHHhhcC
Q 023877 99 QEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRG 170 (276)
Q Consensus 99 ~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~y~~y~~Rnl~rg 170 (276)
.+++++++||++++|+||+.+. .+++.|+.+++.|++.+++|++++|||+|++||.++|+.|.+||+.+|
T Consensus 81 ~~~i~~~~~d~vv~G~d~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~~~~~r~~~~~ 150 (150)
T cd02174 81 PEFLDKYKCDYVAHGDDIYLDA--DGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYRDYHRRNLQRG 150 (150)
T ss_pred HHHHHHhCCCEEEECCCCCCCC--CchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHHHHHHhhhccC
Confidence 9999999999999999887643 346889999999999999999999999999999999999999999886
No 4
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=100.00 E-value=9.8e-38 Score=266.09 Aligned_cols=149 Identities=38% Similarity=0.639 Sum_probs=136.9
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCC--CCCCCHHHHHHHHHhcCCcceEeeCCCCcc
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIPDAPWVV 97 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kg--rpi~s~eER~e~l~~~r~VD~Vi~~~p~~~ 97 (276)
.++||++|+|||||.||+++|++|+++| |+|||||++|+.+.+.|| +|++|++||+++|++|+|||+|++.+|+.+
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lg--d~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~ 79 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELG--DYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVI 79 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHcC--CEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcc
Confidence 4689999999999999999999999995 899999999999988887 499999999999999999999999999988
Q ss_pred hHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHHhhHHHHHHHhhcC
Q 023877 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRG 170 (276)
Q Consensus 98 t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~y~~y~~Rnl~rg 170 (276)
+.+++++++||++++|.++..+....+++.|+.+++.|++..+++++++|||+|++||+++|+.|++||.++|
T Consensus 80 ~~~~~~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~~~~~y~~r~~~k~ 152 (152)
T cd02173 80 TKELIEHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIKNRLAYEARNKKKE 152 (152)
T ss_pred hHHHHHHhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHhHHHHHHHHhccC
Confidence 8999999999999999987653211356889999999999999999999999999999999999999999885
No 5
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=100.00 E-value=3e-37 Score=298.74 Aligned_cols=163 Identities=35% Similarity=0.552 Sum_probs=144.7
Q ss_pred CCCCCCCCCCCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCC--CCCCCHHHHHHHHHhcCCc
Q 023877 9 SNSTDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWV 86 (276)
Q Consensus 9 ~~~~~~~~~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kg--rpi~s~eER~e~l~~~r~V 86 (276)
++.+.|.| ..++||++|+||+||.||+++|++|++++ |+|||||++|+.+.++|| +|+++++||+++|++|+||
T Consensus 242 ~~g~~p~~--~~~iVyv~G~FDlfH~GHi~~L~~Ak~lG--d~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~V 317 (418)
T PLN02406 242 SNGKGPGP--DARIVYIDGAFDLFHAGHVEILRLARALG--DFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYV 317 (418)
T ss_pred hccCCCCC--CCeEEEECCeeccCCHHHHHHHHHHHHhC--CEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcc
Confidence 44444444 56699999999999999999999999994 899999999999999998 5999999999999999999
Q ss_pred ceEeeCCCCcchHHHHhhcCCCEEEeCCCcccc-cCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHHhhHHHHHH
Q 023877 87 DEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYAD-ASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMR 165 (276)
Q Consensus 87 D~Vi~~~p~~~t~e~L~~~~~D~vv~G~d~y~~-~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~y~~y~~R 165 (276)
|+||+++||..+.++|++++||+++||+++... ..+.+.|.|+..|+.|+|..+++++++|||+|++||+++++.|++|
T Consensus 318 D~VVi~ap~~~~~~~i~~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iSTt~II~RI~~~~~~y~~R 397 (418)
T PLN02406 318 DEVIIGAPWEVSKDMITTFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRRIVANHEAYQKR 397 (418)
T ss_pred cEEEeCCCCCCCHHHHHHhCCCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCcHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999865321 1234578999999999999999999999999999999999999999
Q ss_pred HhhcCCCccc
Q 023877 166 NLDRGYSRKD 175 (276)
Q Consensus 166 nl~rg~~~~~ 175 (276)
|.+|+.+..+
T Consensus 398 n~~K~~ke~~ 407 (418)
T PLN02406 398 NEKKAESEKR 407 (418)
T ss_pred HHHHHHHHHH
Confidence 9999665443
No 6
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-36 Score=280.82 Aligned_cols=138 Identities=47% Similarity=0.802 Sum_probs=131.1
Q ss_pred CCCCCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcceEeeCCC
Q 023877 15 APSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAP 94 (276)
Q Consensus 15 ~~~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~Vi~~~p 94 (276)
+...+|.+|+++||||++|.||.++|+|||++ |++|||||+||+.+...||.|+|+.+||++|+++||||||||+++|
T Consensus 3 ~~~~~~~rVw~DGCfDm~HyGHanaLrQAkal--GdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~AP 80 (358)
T KOG2803|consen 3 PKKNRPVRVWADGCFDMVHYGHANALRQAKAL--GDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAP 80 (358)
T ss_pred CcCCCceeEEeccchhhhhhhhhHHHHHHHHh--CCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCC
Confidence 45678899999999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHH
Q 023877 95 WVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIV 156 (276)
Q Consensus 95 ~~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~ 156 (276)
|..+.++++++++|+++||+|.-.++ .+.|.|+.+|++|++.++.||.|+|||+|+.||+
T Consensus 81 yvtt~~~md~y~cd~vvHGdDit~~a--~G~D~Y~~vK~agrykevKRT~GVSTTelvgRml 140 (358)
T KOG2803|consen 81 YVTTLEWMDKYGCDYVVHGDDITLDA--DGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRML 140 (358)
T ss_pred eeccHHHHHHhCCeEEEeCCcceecC--CCccHHHHHHHhcchheeeeccCcchhhhhhHhh
Confidence 99999999999999999999877665 5789999999999999999999999999999985
No 7
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=1.2e-35 Score=283.37 Aligned_cols=156 Identities=34% Similarity=0.555 Sum_probs=140.9
Q ss_pred CCCCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCC--CCCCCHHHHHHHHHhcCCcceEeeCC
Q 023877 16 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIPDA 93 (276)
Q Consensus 16 ~~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kg--rpi~s~eER~e~l~~~r~VD~Vi~~~ 93 (276)
|.+..++||++|+|||||.||+++|++|+++| |+|||||++|+.+.+.|| +|++|.+||+++|++|+|||+|++.+
T Consensus 188 ~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lg--d~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~ 265 (353)
T PTZ00308 188 PKPGDRIVYVDGSFDLFHIGHIRVLQKARELG--DYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCRYVDEVVIGA 265 (353)
T ss_pred CCCCCeEEEECCccCCCCHHHHHHHHHHHHhC--CEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhhCCCCeEEEcC
Confidence 44445799999999999999999999999996 899999999999999898 49999999999999999999999999
Q ss_pred CCcchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHHhhHHHHHHHhhcCCCc
Q 023877 94 PWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSR 173 (276)
Q Consensus 94 p~~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~y~~y~~Rnl~rg~~~ 173 (276)
||.++.+++++++||++++|.|+.......++|.|+..++.|+|..+++++++|||+||+||+++|+.|++||.+|+.+.
T Consensus 266 ~~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~d~y~~~k~~G~~~~i~~~~~~sTt~ii~RI~~~r~~~~~r~~~k~~~e 345 (353)
T PTZ00308 266 PFDVTKEVIDSLHINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFKEVDSGCDLTTDSIVDRVVKNRLAFLKRQAKKRAKE 345 (353)
T ss_pred CCCChHHHHHHhCCCEEEECCCCccccCCCcccchHHHhcCceEEEeCCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999976532112357889999999999999999999999999999999999999999996543
No 8
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=100.00 E-value=6.3e-35 Score=245.32 Aligned_cols=132 Identities=45% Similarity=0.586 Sum_probs=117.4
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhc-cCCCCCCCHHHHHHHHHhcCCcceEeeCCCCcch
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHK-FKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVT 98 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~-~Kgrpi~s~eER~e~l~~~r~VD~Vi~~~p~~~t 98 (276)
|++|+++||||+||+||+++|+|||+++ |+|||.+..|+.+.+ .|++|+++++||+++|++|||||+|++++||..+
T Consensus 1 ~~rV~~~GtFDilH~GHi~~L~~Ak~lG--d~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~ 78 (140)
T COG0615 1 MKRVWADGTFDILHPGHIEFLRQAKKLG--DELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIK 78 (140)
T ss_pred CcEEEEeeEEEEechhHHHHHHHHHHhC--CeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccC
Confidence 5679999999999999999999999996 888888888887766 6667999999999999999999999999999988
Q ss_pred HHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCC------CChHHHHHHHHH
Q 023877 99 QEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDG------ISTSDIIMRIVK 157 (276)
Q Consensus 99 ~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~g------iSTT~Ii~rI~~ 157 (276)
.+++++++||++++|+||+.+ .+.++|+..+ .|.+.+++|++| +||++|++||..
T Consensus 79 ~~~i~~~k~Div~lG~D~~~d---~~~l~~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~ 139 (140)
T COG0615 79 FEDIEEYKPDIVVLGDDQKFD---EDDLKYELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE 139 (140)
T ss_pred hHHHHHhCCCEEEECCCCcCC---hHHHHHHHHH-cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence 999999999999999999954 3456676666 999999999998 778888888753
No 9
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=100.00 E-value=7.9e-33 Score=267.99 Aligned_cols=138 Identities=42% Similarity=0.750 Sum_probs=126.9
Q ss_pred CCCCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcceEeeCCCC
Q 023877 16 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPW 95 (276)
Q Consensus 16 ~~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~Vi~~~p~ 95 (276)
...++.+||++||||++|.||+++|+||+++| |+|||||+||+.+.+.||.|++|++||+++|++|+|||+|++++||
T Consensus 49 ~~~~~~rV~~~G~FDllH~GH~~~L~qAk~lG--d~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~alk~VD~Vv~~apy 126 (418)
T PLN02406 49 KKKKPVRVYMDGCFDMMHYGHANALRQARALG--DELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVIPDAPY 126 (418)
T ss_pred cCCCceEEEEcCeeCCCCHHHHHHHHHHHHhC--CEEEEEEecChhhhccCCCCcCCHHHHHHHHHhcCCCceEEeCCcc
Confidence 55677899999999999999999999999995 8999999999999999999999999999999999999999999999
Q ss_pred cchHHHH----hhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHH
Q 023877 96 VVTQEFL----DKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVK 157 (276)
Q Consensus 96 ~~t~e~L----~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~ 157 (276)
.++.+++ ++++||+++||+|+.... .+.|.|+..+..|++..++||+|+|||+|+.||+.
T Consensus 127 ~~~~d~~~~li~~~~~D~vVhGdD~~~~~--~g~d~y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~ 190 (418)
T PLN02406 127 AITEEFMNKLFNEYNIDYIIHGDDPCLLP--DGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLL 190 (418)
T ss_pred ccchHHHHHHHHHhCCCEEEECCCccccC--CchHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence 8877777 489999999999876533 46789999999999999999999999999999975
No 10
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.98 E-value=1e-31 Score=256.37 Aligned_cols=146 Identities=42% Similarity=0.699 Sum_probs=133.6
Q ss_pred CCCCCCCCCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcceEe
Q 023877 11 STDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVI 90 (276)
Q Consensus 11 ~~~~~~~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~Vi 90 (276)
++.|+...++++||++|+||++|.||+++|+||++++ ++|+|||++|+.+.+.||.|+++++||+++|++|+|||+|+
T Consensus 2 ~~~~~~~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g--~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~~VD~Vv 79 (353)
T PTZ00308 2 SPIPPKKPGTIRVWVDGCFDMLHFGHANALRQARALG--DELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVV 79 (353)
T ss_pred CCCCCCCCCcEEEEEEeecccCCHHHHHHHHHHHHhC--CEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcCCccEEE
Confidence 3566777888999999999999999999999999995 89999999999998889889999999999999999999999
Q ss_pred eCCCCcchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHHhhH
Q 023877 91 PDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYN 160 (276)
Q Consensus 91 ~~~p~~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~y~ 160 (276)
++.||+.+.+|+++++||+++||+|+..+. .+.+.|+.+++.|++.+++||+|+|||+|+.||+....
T Consensus 80 ~~~p~~~~~~fI~~l~~d~vv~GdD~~~g~--~g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~~~~ 147 (353)
T PTZ00308 80 EGYPYTTRLEDLERLECDFVVHGDDISVDL--NGRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLLCTK 147 (353)
T ss_pred ECCCCCchHHHHHHhCCCEEEECCCCCCCC--CccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHHhhh
Confidence 989998888999999999999999876553 45678999999999999999999999999999986554
No 11
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=99.96 E-value=7.1e-29 Score=230.50 Aligned_cols=160 Identities=38% Similarity=0.595 Sum_probs=140.8
Q ss_pred CCCCCCCCCCCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCC--CCCCHHHHHHHHHhcCCc
Q 023877 9 SNSTDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGK--TVMTEDERYESLRHCKWV 86 (276)
Q Consensus 9 ~~~~~~~~~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgr--pi~s~eER~e~l~~~r~V 86 (276)
++.+.|.|.. ++||++|.||+||.||+.+|+.|+.++ |+|||||.+|+.+..+||. |+|+..||...|.+||+|
T Consensus 189 ~~G~~p~p~~--kvVYvdGaFDLFH~GHl~~Le~ak~lg--dyLIvGI~~D~~vneykgs~~PiMnl~ER~LsvlackyV 264 (358)
T KOG2803|consen 189 SNGREPKPTD--KVVYVDGAFDLFHAGHLDFLEKAKRLG--DYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVLACKYV 264 (358)
T ss_pred ecCCCCCCCC--cEEEEcCchhhhccchHHHHHHHHhcc--CceEEEeecCcchhhhccCCCccchHHHHHHHHhhhccc
Confidence 5555555444 599999999999999999999999995 8999999999999999996 999999999999999999
Q ss_pred ceEeeCCCCcchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHHhhHHHHHHH
Q 023877 87 DEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRN 166 (276)
Q Consensus 87 D~Vi~~~p~~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~y~~y~~Rn 166 (276)
|+|++++||..+.++|+.+++|.|++|..+.. . ...+.|+.++..|.+.+.......+|+.|++||..++..|.+||
T Consensus 265 deVvvGaP~~v~s~~i~~~~~~~v~~g~~~~~--~-~~~~py~~~k~~~i~~~~~~~~dltte~Iv~RIis~r~~Ye~Rn 341 (358)
T KOG2803|consen 265 DEVVVGAPYEVTSEFIKLFNIDKVAHGTIPDF--R-DPSDPYADPKRRGIFEEADSGSDLTTELIVERIISNRQAYEARN 341 (358)
T ss_pred ceEEEcCchhccHHHHHhcCceEEEEeccccc--c-CccCccccchhhcchhhcCCcccccHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999973222 1 23457888999998888765556999999999999999999999
Q ss_pred hhcCCCccc
Q 023877 167 LDRGYSRKD 175 (276)
Q Consensus 167 l~rg~~~~~ 175 (276)
.+++.+..+
T Consensus 342 ~kk~~k~~~ 350 (358)
T KOG2803|consen 342 QKKEGKEAP 350 (358)
T ss_pred HHhhhcccc
Confidence 999988887
No 12
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.94 E-value=7.9e-26 Score=187.23 Aligned_cols=133 Identities=41% Similarity=0.611 Sum_probs=116.0
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcceEeeCCCCcchH
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQ 99 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~Vi~~~p~~~t~ 99 (276)
|++|++.|+||++|.||+++|++|++++ ++++|+|++|+...+.|+.|++|.+||++++++|++||.+++.+|+....
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~~~vd~v~~~~~~~~~~ 78 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLG--DYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVILGHPWSYFK 78 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhC--CEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcCCCcCEEEECCCCCHhH
Confidence 6789999999999999999999999996 79999999998877666679999999999999999999999988887544
Q ss_pred HHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEcc--ccCCCChHHHHHHHHH
Q 023877 100 EFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETK--RTDGISTSDIIMRIVK 157 (276)
Q Consensus 100 e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~--rt~giSTT~Ii~rI~~ 157 (276)
.+.+++||++++|+|+..+. .....|+.++++|.++.++ ++.++|||.|+++|.+
T Consensus 79 -~l~~~~~~~vv~G~d~~fg~--~~~~~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i~~ 135 (136)
T cd02170 79 -PLEELKPDVIVLGDDQKNGV--DEEEVYEELKKRGKVIEVPRKKTEGISSSDIIKRILE 135 (136)
T ss_pred -HHHHHCCCEEEECCCCCCCC--cchhHHHHHHHCCeEEEECCCCCCCCcHHHHHHHHHh
Confidence 56779999999999876543 2345689999999888888 8899999999999864
No 13
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.94 E-value=9.5e-26 Score=190.30 Aligned_cols=137 Identities=28% Similarity=0.275 Sum_probs=115.4
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcceEeeCCCCcchH
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQ 99 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~Vi~~~p~~~t~ 99 (276)
..+|++.|+||++|.||.++|++|++++ +.++|++.+|+.+.+.+++|++|.+||++++++|+|||.|++. |+..+.
T Consensus 4 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~--~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~lg~VD~vi~~-~~~~~~ 80 (144)
T cd02172 4 KTVVLCHGVFDLLHPGHVRHLQAARSLG--DILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVVLF-DNPTAL 80 (144)
T ss_pred CEEEEEecccCCCCHHHHHHHHHHHHhC--CeEEEEEeChHHhccCCCCCCCCHHHHHHHHHccCCccEEEEC-CCCCHH
Confidence 3579999999999999999999999995 7999999999887766667899999999999999999999874 444568
Q ss_pred HHHhhcCCCEEEeCCCcccccCC---CCchHHHHHHhcC-eEEEccccCCCChHHHHHHHHHhhH
Q 023877 100 EFLDKHQIDFVAHDSLPYADASG---AGKDVYEFVKAAG-KFKETKRTDGISTSDIIMRIVKDYN 160 (276)
Q Consensus 100 e~L~~~~~D~vv~G~d~y~~~~~---~~~d~y~~lk~~G-~~~~~~rt~giSTT~Ii~rI~~~y~ 160 (276)
+|+++++++++++|.|+-.+... .....++.++++| ++.+. |++++|||+|++||+++|+
T Consensus 81 ~fi~~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~-~~~~~sts~li~~i~~~~~ 144 (144)
T cd02172 81 EIIDALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFT-GEIVFSSSALINRIFDELD 144 (144)
T ss_pred HHHHHhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEe-cCCCcchHHHHHHHHhhcC
Confidence 99999999999999865332110 1123477888886 77888 9999999999999999885
No 14
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.93 E-value=2.1e-25 Score=188.07 Aligned_cols=131 Identities=26% Similarity=0.333 Sum_probs=112.7
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCC--CCCCCHHHHHHHHHhcCCcceEeeCCCCcc
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIPDAPWVV 97 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kg--rpi~s~eER~e~l~~~r~VD~Vi~~~p~~~ 97 (276)
+.+|++.|+||.+|.||.++|++|++++ +.++|+|++|+.....|+ .|++|.+||++++++|++||.|++.+++.
T Consensus 11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~--~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~~- 87 (144)
T TIGR02199 11 KKIVFTNGCFDILHAGHVSYLQQARALG--DRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDEDT- 87 (144)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHhC--CccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCCC-
Confidence 4689999999999999999999999995 789999999998765555 47999999999999999999999855554
Q ss_pred hHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcC-eEEEccccCCCChHHHHHHHHH
Q 023877 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIMRIVK 157 (276)
Q Consensus 98 t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~rt~giSTT~Ii~rI~~ 157 (276)
..+|++.++||++++|.|+-. +....++.++++| ++..+|+++++|||+|++||++
T Consensus 88 ~~~fi~~l~~~~vv~G~d~~~----~~~~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri~~ 144 (144)
T TIGR02199 88 PEELIGELKPDILVKGGDYKV----ETLVGAELVESYGGQVVLLPFVEGRSTTAIIEKILK 144 (144)
T ss_pred HHHHHHHhCCCEEEECCCCCC----CcchhHHHHHHcCCEEEEEeCCCCcCHHHHHHHHhC
Confidence 578999999999999996433 2223467888885 9999999999999999999964
No 15
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.92 E-value=6.9e-25 Score=179.97 Aligned_cols=123 Identities=30% Similarity=0.428 Sum_probs=105.0
Q ss_pred EEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcceEeeCCCCcchHHHH
Q 023877 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFL 102 (276)
Q Consensus 23 V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~Vi~~~p~~~t~e~L 102 (276)
|++.|+||++|.||.++|++|++++ ++++|||++|+.....+..|++|.+||++++++|+|||.|++..||....+++
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~--~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~l 78 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLG--DYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQDI 78 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcC--CEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCccchHHHH
Confidence 5789999999999999999999995 89999999999776555568999999999999999999998878887667778
Q ss_pred hhcCCCEEEeCCCcccccCCCCchHHHHHHhc-C-eEEEccccCCCChHHHHHHH
Q 023877 103 DKHQIDFVAHDSLPYADASGAGKDVYEFVKAA-G-KFKETKRTDGISTSDIIMRI 155 (276)
Q Consensus 103 ~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~-G-~~~~~~rt~giSTT~Ii~rI 155 (276)
++++||++++|+|+-. .++.+++. | ++..+++++++|||.|++.|
T Consensus 79 ~~~~~~~vv~G~D~~g--------~~~~l~~~~~~~v~~v~~~~~vSST~Ir~~~ 125 (125)
T TIGR01518 79 IDFNIDVFVMGDDWEG--------KFDFLKDECPLKVVYLPRTEGVSTTKIKKEI 125 (125)
T ss_pred HHcCCCEEEECCCccc--------hHHHHhhccCcEEEEeCCCCCccHHHHHhhC
Confidence 9999999999986511 14456554 3 78889999999999998864
No 16
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.92 E-value=4e-24 Score=175.56 Aligned_cols=128 Identities=29% Similarity=0.373 Sum_probs=108.8
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcceEeeCCCCcchH
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQ 99 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~Vi~~~p~~~t~ 99 (276)
|++|++.|+||++|.||..+|++|++++ ++|+|+|++|+.....+..+++|.+||++++++|++||++++..+|....
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~--~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~~~f~ 78 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALG--DKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESIRYVDLVIPETNWEQKI 78 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhC--CEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcCCccCEEecCCCccChH
Confidence 5789999999999999999999999995 78999999997543223248999999999999999999998766776556
Q ss_pred HHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHH
Q 023877 100 EFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVK 157 (276)
Q Consensus 100 e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~ 157 (276)
+.+++++|+++++|.|+ . ..++.++++|+++.+|++..+|||.|++.|.+
T Consensus 79 ~~~~~l~~~~vv~G~d~-~-------g~~~~l~~~~~v~~~~~~~~iSSt~Ir~~i~~ 128 (129)
T cd02171 79 EDIKKYNVDVFVMGDDW-E-------GKFDFLKEYCEVVYLPRTKGISSTQLKEMLKK 128 (129)
T ss_pred HHHHHhCCCEEEECCCC-c-------chHHHHHhCcEEEEeCCCCCcChHHHHHHHhh
Confidence 66788999999999854 1 12677899999999999999999999998854
No 17
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.90 E-value=4.7e-23 Score=201.09 Aligned_cols=131 Identities=25% Similarity=0.305 Sum_probs=111.7
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCC--CCCCCHHHHHHHHHhcCCcceEeeCCCCcc
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIPDAPWVV 97 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kg--rpi~s~eER~e~l~~~r~VD~Vi~~~p~~~ 97 (276)
.++|++.|+||++|.||+++|++|++++ ++|+|||++|+.+.+.|| +|+++.+||.+++++|++||+|++.+ +..
T Consensus 340 ~~iv~~~G~fD~~H~GH~~~l~~a~~~~--~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~-~~~ 416 (473)
T PRK11316 340 EKIVMTNGCFDILHAGHVSYLANARKLG--DRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE-EDT 416 (473)
T ss_pred CeEEEEecccccCCHHHHHHHHHHHHhC--CeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC-CCC
Confidence 4789999999999999999999999995 789999999999887786 48999999999999999999998743 334
Q ss_pred hHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHH
Q 023877 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIV 156 (276)
Q Consensus 98 t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~ 156 (276)
..+|+++++||++++|.|+..+. ....++..+..|+++++||++++|||+|++||.
T Consensus 417 ~~~~~~~~~~d~vv~G~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~st~~i~~ri~ 472 (473)
T PRK11316 417 PQRLIAEILPDLLVKGGDYKPEE---IAGSKEVWANGGEVKVLNFEDGCSTTNIIKKIR 472 (473)
T ss_pred HHHHHHHhCCCEEEECCCCCCCc---cccHHHHHHcCCEEEEEcCCCCcCHHHHHHHHh
Confidence 67899999999999998654321 123455455568999999999999999999995
No 18
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=3.3e-23 Score=198.68 Aligned_cols=132 Identities=25% Similarity=0.353 Sum_probs=112.3
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCC--CCCCCHHHHHHHHHhcCCcceEeeCCCCcc
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIPDAPWVV 97 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kg--rpi~s~eER~e~l~~~r~VD~Vi~~~p~~~ 97 (276)
+++|++.||||++|.||+.||.|||+++ |.||||++||.++++.|| ||+.+++.|+.++.++..||.|++-+.- .
T Consensus 332 ~~vvfTNGcFDIlH~GHvsyL~~Ar~lg--d~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~F~ed-T 408 (467)
T COG2870 332 KKVVFTNGCFDILHAGHVTYLAQARALG--DRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVIFDED-T 408 (467)
T ss_pred CeEEEecchhhhccccHHHHHHHHHhhC--CeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEEecCC-C
Confidence 3489999999999999999999999995 999999999999999999 6999999999999999999999872221 2
Q ss_pred hHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhc-CeEEEccccCCCChHHHHHHHHHh
Q 023877 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAA-GKFKETKRTDGISTSDIIMRIVKD 158 (276)
Q Consensus 98 t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~-G~~~~~~rt~giSTT~Ii~rI~~~ 158 (276)
..++|+..+||++|+|.|+-.+.- .+ .+.++.+ |++..++..+|+|||.||++|.+.
T Consensus 409 P~~LI~~~~PdilVKGgDy~~~~i-~g---~~~v~~~GG~v~~i~f~~g~STt~ii~ki~~~ 466 (467)
T COG2870 409 PEELIEAVKPDILVKGGDYKIEKI-VG---ADIVEAYGGEVLLIPFEEGKSTTKIIEKIRAK 466 (467)
T ss_pred HHHHHHHhCcceEEccCCCChhhc-cc---hhhhhhcCCeEEEEecccCCcHHHHHHHHhcc
Confidence 368999999999999996544321 22 3456667 599999999999999999999753
No 19
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.82 E-value=9.1e-20 Score=155.78 Aligned_cols=130 Identities=20% Similarity=0.271 Sum_probs=97.1
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhc-C---CcceEe---eC
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC-K---WVDEVI---PD 92 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~-r---~VD~Vi---~~ 92 (276)
|.+|++.|+|||+|.||+++|++|++++ |+|+|||++|+.+.++|+.|++|.++|++||+.+ . ..+.+. +.
T Consensus 1 ~~~v~~gGtFDplH~GH~~ll~~A~~~~--d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~~~~~~~~~~~~~i~~i~ 78 (153)
T PRK00777 1 MMKVAVGGTFDPLHDGHRALLRKAFELG--KRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKKFLKAVEYDREYEIVKID 78 (153)
T ss_pred CcEEEEecccCCCCHHHHHHHHHHHHcC--CEEEEEEcCCccccccCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 4589999999999999999999999995 8999999999887666767999999999999942 2 222322 13
Q ss_pred CCCcchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcC----eEEEccc-----cCCCChHHHHHHHHHhh
Q 023877 93 APWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKETKR-----TDGISTSDIIMRIVKDY 159 (276)
Q Consensus 93 ~p~~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G----~~~~~~r-----t~giSTT~Ii~rI~~~y 159 (276)
+++..+. . .++|+++.|.+.+.+ +..+-+..++.| +++.++. ++.+|||.|++++.+..
T Consensus 79 d~~gp~~---~-~~~d~ivvs~et~~~----~~~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~~ 146 (153)
T PRK00777 79 DPYGPAL---E-DDFDAIVVSPETYPG----ALKINEIRRERGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDEH 146 (153)
T ss_pred ccCCCcc---c-cCCCEEEEChhhhhh----HHHHHHHHHHCCCCceEEEEEeeeecCCCCeeeHHHHHHhhhccc
Confidence 5555332 2 369999999875542 233444555666 5666665 66799999999886643
No 20
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.79 E-value=1.7e-18 Score=148.21 Aligned_cols=128 Identities=16% Similarity=0.107 Sum_probs=97.2
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh-cCCcceEeeCCCCcch
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIPDAPWVVT 98 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~-~r~VD~Vi~~~p~~~t 98 (276)
|++++++|+|||+|.||++++++|++++ |+|+|++++++ .| ++.+|.++|++|++. ++++|.+.+....+.+
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~--d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t 73 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLF--DEVIVAVAINP----SK-KPLFSLEERVELIREATAHLPNVEVVSFDGLL 73 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHC--CEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEEecCCccH
Confidence 5689999999999999999999999997 89999998875 24 489999999999996 9999998775444568
Q ss_pred HHHHhhcCCCEEEeCCCcccccCCCCchHHHH--HHhc-----CeEEEcccc--CCCChHHHHHHHHHh
Q 023877 99 QEFLDKHQIDFVAHDSLPYADASGAGKDVYEF--VKAA-----GKFKETKRT--DGISTSDIIMRIVKD 158 (276)
Q Consensus 99 ~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~--lk~~-----G~~~~~~rt--~giSTT~Ii~rI~~~ 158 (276)
.++++.+++++++.|.+.+.+|+ .+.+. +.+. ..+...... ..+|||.|++++..+
T Consensus 74 ~~~~~~~~~~~~~~gl~~w~d~e----~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g 138 (159)
T PRK00168 74 VDFAREVGATVIVRGLRAVSDFE----YEFQMAGMNRKLAPEIETVFLMPSPEYSFISSSLVKEVARLG 138 (159)
T ss_pred HHHHHHcCCCEEEecCcchhhHH----HHHHHHHhCCCCCCCCcEEEEeCCCCcceecHHHHHHHHHcC
Confidence 89999999999999976555431 11111 1111 223222222 369999999999654
No 21
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.78 E-value=2.7e-18 Score=148.56 Aligned_cols=121 Identities=23% Similarity=0.329 Sum_probs=92.7
Q ss_pred EEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHH-hcCCcc-e---EeeCCCCc
Q 023877 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVD-E---VIPDAPWV 96 (276)
Q Consensus 22 ~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~-~~r~VD-~---Vi~~~p~~ 96 (276)
++++.|+|||||.||+.++++|++.| |+|||+|.+++..+ |.++.++.+||++|++ +++.++ . +++...+.
T Consensus 1 rgl~~G~FdP~H~GHl~ii~~a~~~~--D~lii~i~s~~~~~--k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~d~~ 76 (165)
T TIGR01527 1 RGFYIGRFQPFHLGHLEVIKKIAEEV--DELIIGIGSAQESH--TLENPFTAGERILMITQSLKEVGDLTYYIIPIEDIE 76 (165)
T ss_pred CeEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcCCCCCC--CCCCCCCHHHHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 47899999999999999999999997 99999999887533 4467889999999996 678774 3 22211122
Q ss_pred chHHHHhhc------CCCEEEeCCCcccccCCCCchHHHHHHhcC-eEEEcc---ccCCCChHHHHHHHHHh
Q 023877 97 VTQEFLDKH------QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETK---RTDGISTSDIIMRIVKD 158 (276)
Q Consensus 97 ~t~e~L~~~------~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~---rt~giSTT~Ii~rI~~~ 158 (276)
..+...++ ++|+|+.|. + .....+++.| ++..+| |+ ++|+|.|+++|.++
T Consensus 77 -~~~~w~~~v~~~~p~~D~vf~~~-~---------~~~~~f~e~g~~v~~~p~~~r~-~~S~T~IR~~i~~~ 136 (165)
T TIGR01527 77 -RNSIWVSYVESMTPPFDVVYSNN-P---------LVRRLFKEAGYEVKRPPMFNRK-EYSGTEIRRRMLNG 136 (165)
T ss_pred -HHHHHHHHHHHhCCCCCEEEECC-H---------HHHHHHHHcCCEEEECCCcCCC-cccHHHHHHHHHcC
Confidence 23344444 779999985 2 2356788888 888888 87 99999999999864
No 22
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.72 E-value=5e-17 Score=132.44 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=94.1
Q ss_pred EEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCC-cceEee-CC---CCc
Q 023877 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKW-VDEVIP-DA---PWV 96 (276)
Q Consensus 22 ~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~-VD~Vi~-~~---p~~ 96 (276)
++++.|+|||+|.||++++++|++.+ ++.++|++++++.... +.++.++.++|++|++++.. +|.+++ +. ++.
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~-~~~~~v~~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~~ 78 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEA-LDEVIIIIVSNPPKKK-RNKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKIL 78 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHc-CCceEEEEcCCChhhc-ccccCCCHHHHHHHHHHhccCCcEEEEEecChhhcc
Confidence 47899999999999999999999997 5899999999875432 13479999999999998875 677754 21 111
Q ss_pred ch----HHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhc--C-eEEEcccc---CCCChHHHHHH
Q 023877 97 VT----QEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAA--G-KFKETKRT---DGISTSDIIMR 154 (276)
Q Consensus 97 ~t----~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~--G-~~~~~~rt---~giSTT~Ii~r 154 (276)
.+ ...+..++++++++|.|...+...+++ +.+++. + .++..+|. ..+|||.|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~---~~~~~~~~~~~vv~~~~~~~~~~iSSt~IR~~ 143 (143)
T cd02039 79 LAVVFILKILLKVGPDKVVVGEDFAFGKNASYN---KDLKELFLDIEIVEVPRVRDGKKISSTLIREL 143 (143)
T ss_pred CHHHHHHHHHHHcCCcEEEECCccccCCchhhh---HHHHHhCCceEEEeeEecCCCcEEehHHhhcC
Confidence 11 234566799999999987766443332 223332 3 67777776 57899999764
No 23
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.71 E-value=9.8e-17 Score=136.49 Aligned_cols=127 Identities=20% Similarity=0.157 Sum_probs=95.6
Q ss_pred EEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh-cCCcceEeeCCCCcchHH
Q 023877 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIPDAPWVVTQE 100 (276)
Q Consensus 22 ~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~-~r~VD~Vi~~~p~~~t~e 100 (276)
+++++|+|||+|.||+.++++|++.+ |+|+|++++++ .| .+.++.++|++|++. ++.++.+.+..-...|.+
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~--d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~ 73 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLF--DEVIVAVAVNP----SK-KPLFSLEERVELIREATKHLPNVEVDGFDGLLVD 73 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHH
Confidence 36899999999999999999999997 89999999775 24 478999999999995 888888876443356789
Q ss_pred HHhhcCCCEEEeCCCcccccCCCCchHHHH--HHhcC-----eEEEcccc--CCCChHHHHHHHHHhh
Q 023877 101 FLDKHQIDFVAHDSLPYADASGAGKDVYEF--VKAAG-----KFKETKRT--DGISTSDIIMRIVKDY 159 (276)
Q Consensus 101 ~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~--lk~~G-----~~~~~~rt--~giSTT~Ii~rI~~~y 159 (276)
+++.++.+++++|.|.+.++. ..... +.+.| .+....-. ..+|||.|++++..+.
T Consensus 74 ~l~~l~~~~~i~G~d~~~~~e----~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~~~~g~ 137 (153)
T cd02163 74 FARKHGANVIVRGLRAVSDFE----YEFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEIARFGG 137 (153)
T ss_pred HHHHcCCCEEEECCcchhhHH----HHHHHHHhCCCCCCCCcEEEEeCCCccceecHHHHHHHHHcCC
Confidence 999999999999987666541 12221 11111 23332222 3599999999987653
No 24
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.71 E-value=2e-17 Score=135.40 Aligned_cols=127 Identities=26% Similarity=0.280 Sum_probs=87.1
Q ss_pred EEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcce---------------
Q 023877 24 YADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDE--------------- 88 (276)
Q Consensus 24 ~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~--------------- 88 (276)
+++|+|||+|.||+.++++|++.++.+ +||+|.+|....+. +++++|.++|++|++.+..++.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~-~vi~v~~~~~~~k~-~~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~~~~ 78 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDED-LVIVVPSDNSPHKD-KKPIFSFEERLEMLRAAFKDDPNIEVDDWELEQDKKK 78 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSES-EEEEEEEEHHCHST-TSSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSSHHH
T ss_pred CeeeEcCcccHHHHHHHHHHHHhcccc-cccccccccccccc-ccccCcHHHHHHHHHHHHhhcCCccccchhHHhHhhh
Confidence 589999999999999999999997322 57888888766542 2489999999999998766555
Q ss_pred -------EeeCCC-------CcchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcC-eEEEccccCCCChHHHHH
Q 023877 89 -------VIPDAP-------WVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIM 153 (276)
Q Consensus 89 -------Vi~~~p-------~~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~rt~giSTT~Ii~ 153 (276)
++++.. |....++++..+++++.++.++.... ...+.+......+ .++..+....+|||+|++
T Consensus 79 ~~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iSST~IR~ 156 (157)
T PF01467_consen 79 YPDVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDDPIET--ISDDEILEKYPLGIIFILDPPRNEISSTEIRE 156 (157)
T ss_dssp STSSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTTTHEE--EEHCHHHHHTTCEEEEEEEGGGTTSSHHHHHH
T ss_pred ccccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCCccch--hhhccccccccceeEEEecCCCCccCHHHHhc
Confidence 555555 66567888889999998885433221 1112233333333 455556667799999998
Q ss_pred H
Q 023877 154 R 154 (276)
Q Consensus 154 r 154 (276)
|
T Consensus 157 ~ 157 (157)
T PF01467_consen 157 R 157 (157)
T ss_dssp H
T ss_pred C
Confidence 6
No 25
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.68 E-value=2.4e-16 Score=149.19 Aligned_cols=149 Identities=20% Similarity=0.261 Sum_probs=106.5
Q ss_pred EEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh-c-CCcceEe---eCCCCc
Q 023877 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-C-KWVDEVI---PDAPWV 96 (276)
Q Consensus 22 ~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~-~-r~VD~Vi---~~~p~~ 96 (276)
+|++.|+||+||.||..+|++|++++ |+|||||++|++++++|.+| .|+++|+++|++ + ++++.+. +.+|+.
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~g--d~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~G 78 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETG--DEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYG 78 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcC--CEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCC
Confidence 69999999999999999999999984 89999999999998777667 999999999998 4 6676543 267887
Q ss_pred chHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcC----eEEEccc---cCC--CChHHHHHHHHHhhHHHHHHHh
Q 023877 97 VTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKETKR---TDG--ISTSDIIMRIVKDYNQYVMRNL 167 (276)
Q Consensus 97 ~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G----~~~~~~r---t~g--iSTT~Ii~rI~~~y~~y~~Rnl 167 (276)
.+ +...++|+++.+.+.+.+ +..+-+..++.| +++.++. .++ +|||.|++.-++.
T Consensus 79 pt---~~~~~~d~IVVS~ET~~~----~~~IN~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~eid~--------- 142 (322)
T PRK01170 79 NT---LYEEDYEIIVVSPETYQR----ALKINEIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEIDG--------- 142 (322)
T ss_pred CC---cccCCCCEEEEecccccc----HHHHHHHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhccc---------
Confidence 43 334689999999866543 334445556666 3444442 234 6999998865433
Q ss_pred hcCCCcccccchhhhhhHHHHHH
Q 023877 168 DRGYSRKDLGVSYVKEKRLRVNM 190 (276)
Q Consensus 168 ~rg~~~~~l~~~~~~~~~~~~~~ 190 (276)
+|--.+.+.|..=+.|..|++-
T Consensus 143 -~g~~~~~~~V~VGS~NPvKi~A 164 (322)
T PRK01170 143 -NGKRLKPLKINISTTNPAKINA 164 (322)
T ss_pred -cCCcCCCcEEEEeCCChHHHHH
Confidence 2222223445445556666543
No 26
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.67 E-value=9.7e-16 Score=130.54 Aligned_cols=127 Identities=15% Similarity=0.102 Sum_probs=88.8
Q ss_pred EEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh-cCCcceEeeCCCCcchHH
Q 023877 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIPDAPWVVTQE 100 (276)
Q Consensus 22 ~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~-~r~VD~Vi~~~p~~~t~e 100 (276)
+++++|+|||+|.||++++++|++.+ |+|+|+++.++ .| .+..|.++|++|++. +..-+.+.+..--+.|.+
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~--d~v~~~~~~~p----~k-~~~~~~~~R~~m~~~a~~~~~~~~v~~~e~yt~d 73 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALF--DEVIVAVAKNP----SK-KPLFSLEERVELIKDATKHLPNVRVDVFDGLLVD 73 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhC--CEEEEEEcCCC----CC-CCCcCHHHHHHHHHHHHhhCCCeEEcCccchHHH
Confidence 47899999999999999999999997 89999998553 34 378999999999995 544344433111145789
Q ss_pred HHhhcCCCEEEeCCCcccccCCCCchHHHHHH---h--cC-eEEEcccc---CCCChHHHHHHHHHhh
Q 023877 101 FLDKHQIDFVAHDSLPYADASGAGKDVYEFVK---A--AG-KFKETKRT---DGISTSDIIMRIVKDY 159 (276)
Q Consensus 101 ~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk---~--~G-~~~~~~rt---~giSTT~Ii~rI~~~y 159 (276)
.++.++.++++.|.|.+.++. .+.+... . .. ..++...+ ..+|||.|++++..+.
T Consensus 74 t~~~l~~~~~i~G~~~~~~~~----~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g~ 137 (155)
T TIGR01510 74 YAKELGATFIVRGLRAATDFE----YELQMALMNKHLAPEIETVFLMASPEYAFVSSSLVKEIASFGG 137 (155)
T ss_pred HHHHcCCCEEEecCcchhhHH----HHHHHHhhCcccccCCcEEEEeCCcchhhccHHHHHHHHHcCC
Confidence 999999999999987666542 1111110 0 01 12222223 3799999999987653
No 27
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.66 E-value=6.3e-16 Score=133.00 Aligned_cols=120 Identities=18% Similarity=0.229 Sum_probs=87.6
Q ss_pred EEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHH-hcCCcc----eE--ee-CC
Q 023877 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVD----EV--IP-DA 93 (276)
Q Consensus 22 ~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~-~~r~VD----~V--i~-~~ 93 (276)
++++.|+|||||.||+.++++|++.+ |+|+|+|+++...+ +.++.++.+||++|++ +++.+| .| ++ ++
T Consensus 1 ~~v~~G~FdP~H~GHl~~i~~a~~~~--d~l~v~v~s~~~~~--~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d 76 (163)
T cd02166 1 RALFIGRFQPFHLGHLKVIKWILEEV--DELIIGIGSAQESH--TLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPD 76 (163)
T ss_pred CeEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEecCCCCCC--CCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCC
Confidence 36899999999999999999999997 99999998776443 3356799999999999 677765 33 22 22
Q ss_pred CCcchHHHHhhc------CCCEEEeCCCcccccCCCCchHHHHHHhcC-eEEEcccc--CCCChHHHHHHHHH
Q 023877 94 PWVVTQEFLDKH------QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRT--DGISTSDIIMRIVK 157 (276)
Q Consensus 94 p~~~t~e~L~~~------~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~rt--~giSTT~Ii~rI~~ 157 (276)
+. . .+...++ .+|+++.|.+ |. .+.++++| .++.+|++ +++|+|+|++.|.+
T Consensus 77 ~~-~-~~~w~~~v~~~vp~~div~~g~~-~~---------~~~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~~ 137 (163)
T cd02166 77 IE-R-NSLWVSYVESLTPPFDVVYSGNP-LV---------ARLFKEAGYEVRRPPMFNREEYSGTEIRRLMLG 137 (163)
T ss_pred CC-c-hHHHHHHHHHHCCCCCEEEECch-HH---------HHhhhhcCCeEecCCcccCCCCCHHHHHHHHHc
Confidence 21 1 2222223 5799988863 21 23456778 66788874 48999999999863
No 28
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.66 E-value=1.5e-15 Score=132.14 Aligned_cols=148 Identities=21% Similarity=0.184 Sum_probs=101.9
Q ss_pred EEEcccccCCChHHHHHHHHHhhhCC-CCeEEEEEcCChhhh----ccCC-CCCCCHHHHHHHHHhcCCcceEeeCCCCc
Q 023877 23 VYADGIYDLFHFGHARSLEQAKKSFP-NTYLLVGCCNDETTH----KFKG-KTVMTEDERYESLRHCKWVDEVIPDAPWV 96 (276)
Q Consensus 23 V~~~G~FD~fH~GHl~~L~qAk~l~~-~d~LIVGV~sD~~~~----~~Kg-rpi~s~eER~e~l~~~r~VD~Vi~~~p~~ 96 (276)
|++.|+||++|.||.++|++|++++. .+..+|.++.|+... ..+. .+++|.++|+++++++. ||.+++. |++
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~-vd~v~~~-~f~ 79 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG-VDYLLVL-PFD 79 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC-CCEEEEe-CCC
Confidence 78999999999999999999999852 123455555444321 1222 47999999999999997 9999862 221
Q ss_pred ------chHHHHhhc----CCCEEEeCCCcccccCCCC--chHHHHHHhcC-eEEEccc----cCCCChHHHHHHHHHhh
Q 023877 97 ------VTQEFLDKH----QIDFVAHDSLPYADASGAG--KDVYEFVKAAG-KFKETKR----TDGISTSDIIMRIVKDY 159 (276)
Q Consensus 97 ------~t~e~L~~~----~~D~vv~G~d~y~~~~~~~--~d~y~~lk~~G-~~~~~~r----t~giSTT~Ii~rI~~~y 159 (276)
...+|++.+ +++.++.|.|+..+....+ +...+.+++.| +++.+++ ...+|||.|++.|.+.-
T Consensus 80 ~~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G~ 159 (180)
T cd02064 80 KEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEGD 159 (180)
T ss_pred HHHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhCC
Confidence 233455443 7999999997754422222 23334556666 7777775 46899999999997776
Q ss_pred HHHHHHHhhcCCC
Q 023877 160 NQYVMRNLDRGYS 172 (276)
Q Consensus 160 ~~y~~Rnl~rg~~ 172 (276)
-+-...-|-|-|+
T Consensus 160 i~~an~lLg~~y~ 172 (180)
T cd02064 160 VELANELLGRPYS 172 (180)
T ss_pred HHHHHHHcCCCcE
Confidence 5666665555554
No 29
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.59 E-value=1.8e-14 Score=121.85 Aligned_cols=92 Identities=22% Similarity=0.195 Sum_probs=76.0
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHH-hcCCcceEeeCCC-Ccc
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIPDAP-WVV 97 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~-~~r~VD~Vi~~~p-~~~ 97 (276)
|++++++|+|||+|.||++++++|.++| |+|+|+++.++ .| .+.+|.++|+++++ .++..+.|.+... -++
T Consensus 1 mkiai~~GSFDPih~GHl~ii~~A~~~~--D~v~v~v~~np----~K-~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l 73 (140)
T PRK13964 1 MKIAIYPGSFDPFHKGHLNILKKALKLF--DKVYVVVSINP----DK-SNASDLDSRFKNVKNKLKDFKNVEVLINENKL 73 (140)
T ss_pred CeEEEEeeeeCCCCHHHHHHHHHHHHhC--CEEEEEeccCC----CC-CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCc
Confidence 5689999999999999999999999997 89999999874 34 37899999999998 5666666644322 257
Q ss_pred hHHHHhhcCCCEEEeCCCccc
Q 023877 98 TQEFLDKHQIDFVAHDSLPYA 118 (276)
Q Consensus 98 t~e~L~~~~~D~vv~G~d~y~ 118 (276)
+.++.++.+.++++.|...-.
T Consensus 74 ~v~~~~~~~a~~ivrGlR~~~ 94 (140)
T PRK13964 74 TAEIAKKLGANFLIRSARNNI 94 (140)
T ss_pred HHHHHHHCCCeEEEEecCCCc
Confidence 889999999999999975433
No 30
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.58 E-value=6.9e-15 Score=125.85 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=77.8
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh-cCCcceEeeCCCCcch
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIPDAPWVVT 98 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~-~r~VD~Vi~~~p~~~t 98 (276)
|++++++|+|||+|+||++++++|.++| |+|||+|..++ .| +|.||.+||.++++. .+.-+.|-+..--++.
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~F--d~viVaV~~np----~K-~plFsleER~~l~~~~~~~l~nV~V~~f~~Ll 74 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALF--DEVIVAVAINP----SK-KPLFSLEERVELIREATKHLPNVEVVGFSGLL 74 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhc--cEEEEEEEeCC----Cc-CCCcCHHHHHHHHHHHhcCCCceEEEecccHH
Confidence 6789999999999999999999999999 89999999876 24 699999999999994 5666777553333588
Q ss_pred HHHHhhcCCCEEEeCCCcc
Q 023877 99 QEFLDKHQIDFVAHDSLPY 117 (276)
Q Consensus 99 ~e~L~~~~~D~vv~G~d~y 117 (276)
.+|.+++++.++++|.-.-
T Consensus 75 vd~ak~~~a~~ivRGLR~~ 93 (159)
T COG0669 75 VDYAKKLGATVLVRGLRAV 93 (159)
T ss_pred HHHHHHcCCCEEEEecccc
Confidence 9999999999999997433
No 31
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.58 E-value=5e-15 Score=107.58 Aligned_cols=65 Identities=43% Similarity=0.676 Sum_probs=58.3
Q ss_pred EEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcce
Q 023877 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDE 88 (276)
Q Consensus 22 ~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~ 88 (276)
++++.|+|||+|.||+.++++|++++ +.++|+|.+|+...+.|..++++.++|.++++.|.+++.
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~--~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 65 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELF--DELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVDE 65 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhC--CEEEEEECchHhccccCCCCCCCHHHHHHHHHHhccccC
Confidence 47999999999999999999999997 489999999888777665589999999999999988764
No 32
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.56 E-value=8.1e-14 Score=123.11 Aligned_cols=103 Identities=15% Similarity=0.015 Sum_probs=76.0
Q ss_pred CCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCC-CCCCCHHHHHHHHH-hcCCcceEee----
Q 023877 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLR-HCKWVDEVIP---- 91 (276)
Q Consensus 18 ~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kg-rpi~s~eER~e~l~-~~r~VD~Vi~---- 91 (276)
.+|++++++|+|||+|.||+.++++|++.++-|.+++.+++.+. .|. +...+.++|++|++ +++..+.+.+
T Consensus 2 ~~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E 78 (203)
T PRK00071 2 MMKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPP---HKPQKPLAPLEHRLAMLELAIADNPRFSVSDIE 78 (203)
T ss_pred CCcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHH
Confidence 35678999999999999999999999998866888888887652 233 36899999999999 5666554433
Q ss_pred ----CCCCc-chHHHHhhcCCC---EEEeCCCcccccCCC
Q 023877 92 ----DAPWV-VTQEFLDKHQID---FVAHDSLPYADASGA 123 (276)
Q Consensus 92 ----~~p~~-~t~e~L~~~~~D---~vv~G~d~y~~~~~~ 123 (276)
..+|+ .|.+.+++..|+ +++.|.|.+.+...|
T Consensus 79 ~~~~~~syT~~tl~~l~~~~p~~~~~fiiG~D~l~~l~~W 118 (203)
T PRK00071 79 LERPGPSYTIDTLRELRARYPDVELVFIIGADALAQLPRW 118 (203)
T ss_pred HhCCCCCCHHHHHHHHHHHCCCCcEEEEEcHHHhhhcccc
Confidence 23343 345666666666 688998866654433
No 33
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.55 E-value=6.7e-14 Score=121.99 Aligned_cols=123 Identities=20% Similarity=0.308 Sum_probs=85.7
Q ss_pred EEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh-cCC--c--ceE-eeCCC-
Q 023877 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKW--V--DEV-IPDAP- 94 (276)
Q Consensus 22 ~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~-~r~--V--D~V-i~~~p- 94 (276)
++++.|+|||||.||+.++++|++.+ |+|+|+|++....+ +.++.++.+||++|++. +.. + +.+ +.+-|
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~--d~v~v~i~s~~~~~--~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D 77 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEV--DELIIGIGSAQESH--TLKNPFTAGERILMIRKALEEEGIDLSRYYIIPIPD 77 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhC--CEEEEEecCCCCCC--CCCCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCC
Confidence 68999999999999999999999986 89999997643222 22467999999999994 442 2 223 22211
Q ss_pred ---CcchHHHHhhc--CCCEEEeCCCcccccCCCCchHHHHHHhcC-eEEEcc--ccCCCChHHHHHHHHHh
Q 023877 95 ---WVVTQEFLDKH--QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETK--RTDGISTSDIIMRIVKD 158 (276)
Q Consensus 95 ---~~~t~e~L~~~--~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~--rt~giSTT~Ii~rI~~~ 158 (276)
+..-..+++.. ++|+++.|. +|. .+.+.++| +++.+| ...++|+|+|+++|.++
T Consensus 78 ~~~~~~w~~~v~~~~~~~d~v~~~~-~y~---------~~~f~~~g~~v~~~p~~~~~~iSsT~IR~~i~~g 139 (174)
T PRK01153 78 IEFNSIWVSHVESYTPPFDVVYTGN-PLV---------ARLFREAGYEVRQPPMFNREEYSGTEIRRRMIEG 139 (174)
T ss_pred cchHHHHHHHHHHhCCCCCEEEECC-hHH---------HHhchhhCCeEecCCccccCCCCHHHHHHHHHcC
Confidence 11122344433 569988886 322 34456777 667777 56799999999999653
No 34
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=99.54 E-value=1.7e-13 Score=128.98 Aligned_cols=146 Identities=21% Similarity=0.203 Sum_probs=101.5
Q ss_pred EEEEcccccCCChHHHHHHHHHhhhCCCCeE---EEEEcCChhhhc----cC-CCCCCCHHHHHHHHHhcCCcceEeeCC
Q 023877 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYL---LVGCCNDETTHK----FK-GKTVMTEDERYESLRHCKWVDEVIPDA 93 (276)
Q Consensus 22 ~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~L---IVGV~sD~~~~~----~K-grpi~s~eER~e~l~~~r~VD~Vi~~~ 93 (276)
.|++.|+||.+|.||.++|++|++++ +.+ .|.++-|+.... .+ .++++|.+||.+.++++. ||.+++ -
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a--~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~g-VD~~~~-~ 90 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIA--RERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELG-VDYVLV-L 90 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHH--HhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcC-CCEEEE-e
Confidence 69999999999999999999999985 333 345554543321 12 247999999999999997 999976 2
Q ss_pred CCc------chHHHHhh-----cCCCEEEeCCCcccccCCCCchHHHHHHh----cC-eEEEccc----cCCCChHHHHH
Q 023877 94 PWV------VTQEFLDK-----HQIDFVAHDSLPYADASGAGKDVYEFVKA----AG-KFKETKR----TDGISTSDIIM 153 (276)
Q Consensus 94 p~~------~t~e~L~~-----~~~D~vv~G~d~y~~~~~~~~d~y~~lk~----~G-~~~~~~r----t~giSTT~Ii~ 153 (276)
|++ ...+|+++ ++++.+++|.|+-.+....++ ++.+++ .| ++..++. ...+|||.|++
T Consensus 91 ~F~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~--~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~ 168 (305)
T PRK05627 91 PFDEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGD--FELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQ 168 (305)
T ss_pred cCCHHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCC--HHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHH
Confidence 221 23456654 799999999976543221121 344444 45 6666653 46899999999
Q ss_pred HHHHhhHHHHHHHhhcCCCc
Q 023877 154 RIVKDYNQYVMRNLDRGYSR 173 (276)
Q Consensus 154 rI~~~y~~y~~Rnl~rg~~~ 173 (276)
.|.+.--+-..+-|-|-|+.
T Consensus 169 ~I~~G~i~~A~~lLg~~y~~ 188 (305)
T PRK05627 169 ALAEGDLELANKLLGRPYSI 188 (305)
T ss_pred HHHcCCHHHHHhhhcCCCce
Confidence 99877666666666555554
No 35
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.52 E-value=1.6e-13 Score=119.99 Aligned_cols=131 Identities=17% Similarity=0.098 Sum_probs=88.3
Q ss_pred EEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh-cCCcceEee--------C
Q 023877 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIP--------D 92 (276)
Q Consensus 22 ~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~-~r~VD~Vi~--------~ 92 (276)
+++++|+|||+|.||+.+++.|++.++.|.|+|.++.++. .|+.+.++.++|++|++. ++..+.+.+ .
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~ 77 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPP---HKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDG 77 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCC
Confidence 3689999999999999999999999877899998877652 344578899999999994 554444433 1
Q ss_pred CCCc-chHHHHhhcCCC---EEEeCCCcccccCCCCchHHHHHHhcCeEEEcccc-------------------------
Q 023877 93 APWV-VTQEFLDKHQID---FVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRT------------------------- 143 (276)
Q Consensus 93 ~p~~-~t~e~L~~~~~D---~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt------------------------- 143 (276)
..++ .|.+.+++..|+ +++.|.|.+.....|.+ ++.+.+...++.++|.
T Consensus 78 ~~~t~~tl~~l~~~~p~~~~~~liG~D~l~~~~~W~~--~~~i~~~~~~iv~~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (192)
T cd02165 78 PSYTIDTLEELRERYPNAELYFIIGSDNLIRLPKWYD--WEELLSLVHLVVAPRPGYPIEDASLEKLLLPGGRIILLDNP 155 (192)
T ss_pred CCCHHHHHHHHHHhccCCCEEEEEcHHHhhhcccccC--HHHHHHhCcEEEEeCCCCCcccchhhhhccCCCcEEEecCC
Confidence 2232 244556655554 57889887766544422 2333333444444442
Q ss_pred -CCCChHHHHHHHHH
Q 023877 144 -DGISTSDIIMRIVK 157 (276)
Q Consensus 144 -~giSTT~Ii~rI~~ 157 (276)
..+|||+|++++.+
T Consensus 156 ~~~iSST~IR~~~~~ 170 (192)
T cd02165 156 LLNISSTEIRERLKN 170 (192)
T ss_pred ccccCHHHHHHHHHc
Confidence 25788888877753
No 36
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.50 E-value=5.2e-14 Score=123.37 Aligned_cols=125 Identities=15% Similarity=0.080 Sum_probs=81.6
Q ss_pred EEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh-cCCc--c--eEee----CC
Q 023877 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWV--D--EVIP----DA 93 (276)
Q Consensus 23 V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~-~r~V--D--~Vi~----~~ 93 (276)
+++.|+|||||.||+.++++|++.+ ++|||+|++....+. + ++.++.+||++|++. +..- | .|.+ +.
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~--~~vii~i~s~~~~~~-~-~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~ 77 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKA--KKVIILIGSARTARN-I-KNPWTSEEREVMIEAALSDAGADLARVHFRPLRDH 77 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHC--CeEEEEeCCCCCCCC-C-CCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCC
Confidence 5899999999999999999999998 699999987754332 2 367999999999996 4431 2 2321 22
Q ss_pred -----CCcchH-HHHh---hcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHH
Q 023877 94 -----PWVVTQ-EFLD---KHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVK 157 (276)
Q Consensus 94 -----p~~~t~-e~L~---~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~ 157 (276)
.|.... ..+. ..++|+++.|.+.-.+ .-....+.+++.+ .+|..+.+|+|+|++++..
T Consensus 78 ~~~~~~W~~~v~~~v~~~~~~~~~i~~~g~~kd~~-----~~~~~lfpe~~~~-~~p~~~~iSsT~IR~~i~~ 144 (181)
T cd02168 78 LYSDNLWLAEVQQQVLEIAGGSASVGLVGHRKDAS-----SYYLRSFPQWDYL-EVPNYPDLNATDIRRAYFE 144 (181)
T ss_pred CCChHHHHHHHHHhChHhhCCCCcEEEeCCccCCC-----ccceeecCCcCee-cCccccccCHHHHHHHHHh
Confidence 143101 1111 1256888888532111 0111223334433 6676678999999999976
No 37
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.50 E-value=8.6e-14 Score=132.41 Aligned_cols=128 Identities=15% Similarity=0.148 Sum_probs=89.7
Q ss_pred CCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh-cCCcc--eEe-e--
Q 023877 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVD--EVI-P-- 91 (276)
Q Consensus 18 ~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~-~r~VD--~Vi-~-- 91 (276)
.++.++++.|+|||||.||+.++++|++.+ |+|||+|+++...+.. +.++|.+||++|++. ++.+| .|. +
T Consensus 4 ~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~--d~l~v~i~s~~~~~~~--~~~~~~~~R~~mi~~~~~~~~~~r~~~~pi 79 (340)
T PRK05379 4 RRYDYLVFIGRFQPFHNGHLAVIREALSRA--KKVIVLIGSADLARSI--KNPFSFEERAQMIRAALAGIDLARVTIRPL 79 (340)
T ss_pred ccceEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEEccCCCCCcC--CCCCCHHHHHHHHHHHhhcCCCceEEEEEC
Confidence 356789999999999999999999999997 8999999876543332 357999999999995 56443 231 1
Q ss_pred -CC-----CCcchHHHHhh-------cCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHHh
Q 023877 92 -DA-----PWVVTQEFLDK-------HQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKD 158 (276)
Q Consensus 92 -~~-----p~~~t~e~L~~-------~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~ 158 (276)
+. .|. ..+++ .++|+++.|.+. .. ..-....+.++|.+ .++..+++|+|+|+++|.++
T Consensus 80 ~d~~~~~~~W~---~~v~~~v~~~~~~~~~~~~~g~~~-~~----~~~~~~~f~~~~~~-~~~~~~~~s~T~iR~~~~~~ 150 (340)
T PRK05379 80 RDSLYNDSLWL---AEVQAAVAEHAGADARIGLIGHEK-DA----SSYYLRSFPQWELV-DVPNTEDLSATEIRDAYFEG 150 (340)
T ss_pred CCCCcChHHHH---HHHHHHHHhccCCCCcEEEECCcC-CC----ChHHHHhccccccc-cCCcccccCccHHHHHHHcC
Confidence 22 142 22222 578999999632 11 11222344566644 56677899999999999753
No 38
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=99.49 E-value=3.2e-13 Score=118.60 Aligned_cols=97 Identities=14% Similarity=0.111 Sum_probs=70.1
Q ss_pred EEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCC-CCCCCHHHHHHHHH-hcCCcceEee--------CC
Q 023877 24 YADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLR-HCKWVDEVIP--------DA 93 (276)
Q Consensus 24 ~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kg-rpi~s~eER~e~l~-~~r~VD~Vi~--------~~ 93 (276)
+++|+|||+|.||+.++++|++.++-|.+++..+.++- .|. ....+.++|++|++ +++..+.+.+ ..
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~ 77 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPP---HKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGP 77 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCC
Confidence 36899999999999999999999866888888876652 233 34689999999999 5665544432 23
Q ss_pred CCc-chHHHHhhcCCC---EEEeCCCcccccCCC
Q 023877 94 PWV-VTQEFLDKHQID---FVAHDSLPYADASGA 123 (276)
Q Consensus 94 p~~-~t~e~L~~~~~D---~vv~G~d~y~~~~~~ 123 (276)
+|+ .|.+.+++..|+ +++.|.|.+.....|
T Consensus 78 syT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W 111 (193)
T TIGR00482 78 SYTIDTLKHLKKKYPDVELYFIIGADALRSFPLW 111 (193)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEEcHHHhhhhccc
Confidence 344 356777776565 578898866654433
No 39
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.49 E-value=1.1e-13 Score=117.12 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=83.9
Q ss_pred EEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCC-CCCCCHHHHHHHHHh-cCCc----c-eEe-eCC
Q 023877 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLRH-CKWV----D-EVI-PDA 93 (276)
Q Consensus 22 ~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kg-rpi~s~eER~e~l~~-~r~V----D-~Vi-~~~ 93 (276)
+|+++|+||++|.||..+|.+|++++. ++++|||++|+.....+. ++++|.++|+++++. +... . +++ +.+
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~-d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d 79 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLAG-EKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDD 79 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccC
Confidence 378999999999999999999999973 789999999985543222 258999999999995 3332 2 222 378
Q ss_pred CCcchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcC----eEEEccc------cCCCChHHHHH
Q 023877 94 PWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKETKR------TDGISTSDIIM 153 (276)
Q Consensus 94 p~~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G----~~~~~~r------t~giSTT~Ii~ 153 (276)
|++.+.. .-.+|++|.....+.. +..+=+.=++.| .++.++. ...+|||.|++
T Consensus 80 ~~Gpt~~---~~~~d~lVVS~ET~~~----~~~iN~~R~~~gl~pl~i~~v~~v~~~~~~~kiSST~iR~ 142 (143)
T cd02164 80 PYGPTGT---DPDLEAIVVSPETYPG----ALKINRKREENGLSPLEIVVVPLVKADEDGEKISSTRIRR 142 (143)
T ss_pred CCCCccc---CCCCCEEEEcHHHhhh----HHHHHHHHHHCCCCceeEEEEEeeccCCCCCeecchhhhC
Confidence 8875532 3578999887644432 222222222345 3444332 34789999875
No 40
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.49 E-value=4.1e-13 Score=115.15 Aligned_cols=127 Identities=18% Similarity=0.248 Sum_probs=85.3
Q ss_pred EEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh-cCCcceEee------CCC-
Q 023877 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIP------DAP- 94 (276)
Q Consensus 23 V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~-~r~VD~Vi~------~~p- 94 (276)
+++.|+|||+|.||+.++++|++.+ |+|+|++++++..+ ..++.+|.++|++|++. ++.-+.+.+ +.|
T Consensus 2 gl~~G~F~P~H~GHl~li~~a~~~~--d~v~vi~~~~~~~~--~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~ 77 (158)
T cd02167 2 GIVFGKFAPLHTGHVYLIYKALSQV--DELLIIVGSDDTRD--DARTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPE 77 (158)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCccc--ccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCC
Confidence 6889999999999999999999997 89999999886322 12478999999999994 665333321 333
Q ss_pred ----CcchH----HHHhhc---CCCEEEeCCCcccccCCCCchHHHHHHhcC-eEEEc--cc-cCCCChHHHHHHHHHhh
Q 023877 95 ----WVVTQ----EFLDKH---QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKET--KR-TDGISTSDIIMRIVKDY 159 (276)
Q Consensus 95 ----~~~t~----e~L~~~---~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~--~r-t~giSTT~Ii~rI~~~y 159 (276)
|..-. ..+.+. ++|+++.|. +|.. ..+-.....| .+..+ .| ...+|+|.|++...+.|
T Consensus 78 ~~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~-~~~~------~~~~~~~~~~~~~~~v~~~r~~~~iSaT~IR~~p~~~w 150 (158)
T cd02167 78 YPNGWDIWSNRVKTLIAENTRCRPDIVFTAE-EYEA------AFELVLAYLGAQVVLVDPDRTDISVSATQIRENPFRYW 150 (158)
T ss_pred CchhHHHHHHHHHHHHhhhcCCCCCEEEEcc-Ccch------hhhhHhhcCCCeEEEeccccccCCcCHHHHHhCHHHHH
Confidence 42112 223322 679998886 4432 1111123445 55543 34 46899999999876665
Q ss_pred H
Q 023877 160 N 160 (276)
Q Consensus 160 ~ 160 (276)
+
T Consensus 151 ~ 151 (158)
T cd02167 151 Y 151 (158)
T ss_pred H
Confidence 4
No 41
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.48 E-value=1.8e-12 Score=123.26 Aligned_cols=141 Identities=18% Similarity=0.136 Sum_probs=99.4
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCC-CCCCHHHHHHHHH-hcCCcceEee------
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGK-TVMTEDERYESLR-HCKWVDEVIP------ 91 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgr-pi~s~eER~e~l~-~~r~VD~Vi~------ 91 (276)
|++++++|+|||+|.||+.++++|.+.++-|+|++..+.++ ..|.. +..+.++|++|++ +++..+.+.+
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~---p~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~ 77 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYIN---PFKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIK 77 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCC---CCCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHh
Confidence 56899999999999999999999999876789998887665 23433 3555599999998 5655444432
Q ss_pred --CCCCc-chHHHHhhcCCC---EEEeCCCcccccCCCCchHHHHHHhcCeEEEcccc--------------------CC
Q 023877 92 --DAPWV-VTQEFLDKHQID---FVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRT--------------------DG 145 (276)
Q Consensus 92 --~~p~~-~t~e~L~~~~~D---~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt--------------------~g 145 (276)
..+|+ .|.+.+++..|+ +++.|.|.+.+...|.+ ++.+-+...++.++|. ..
T Consensus 78 ~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~l~~W~~--~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~ 155 (342)
T PRK07152 78 RQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFKKWKN--IEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLN 155 (342)
T ss_pred CCCCCcHHHHHHHHHHhCCCCcEEEEecHHHhhhcccccC--HHHHHHhCCEEEEECCCCCcccccccCcEEEecCCccc
Confidence 22344 356677766665 68899987776555532 4555555566666552 35
Q ss_pred CChHHHHHHHHHhh-----HHHHHH
Q 023877 146 ISTSDIIMRIVKDY-----NQYVMR 165 (276)
Q Consensus 146 iSTT~Ii~rI~~~y-----~~y~~R 165 (276)
+|||+|++++.++. .+|+..
T Consensus 156 iSST~IR~~~~~~~vP~~V~~YI~~ 180 (342)
T PRK07152 156 ISSTKIRKGNLLGKLDPKVNDYINE 180 (342)
T ss_pred cCHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999987653 356654
No 42
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.46 E-value=1.4e-12 Score=119.28 Aligned_cols=123 Identities=12% Similarity=-0.001 Sum_probs=83.6
Q ss_pred CCCCCCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHH-hcCCcc----e
Q 023877 14 TAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVD----E 88 (276)
Q Consensus 14 ~~~~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~-~~r~VD----~ 88 (276)
+|....+++++++|+|||+|.||+.++++|.+.+.-|.+++..+.++. .| .+..+.++|++|++ +++..| .
T Consensus 16 ~~~~~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp---~K-~~~~~~~~Rl~M~~lAi~~~~~~~~~ 91 (243)
T PRK06973 16 PPLARPRRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPW---QK-ADVSAAEHRLAMTRAAAASLVLPGVT 91 (243)
T ss_pred CCCCCCceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCC---CC-CCCCCHHHHHHHHHHHHHhccCCCce
Confidence 334444567899999999999999999999999877999998887753 34 46789999999999 565321 1
Q ss_pred Ee-----e---CCCCc-chHHHHhhcC-CC---EEEeCCCcccccCCCCchHHHHHHhcCeEEEccc
Q 023877 89 VI-----P---DAPWV-VTQEFLDKHQ-ID---FVAHDSLPYADASGAGKDVYEFVKAAGKFKETKR 142 (276)
Q Consensus 89 Vi-----~---~~p~~-~t~e~L~~~~-~D---~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~r 142 (276)
+. + ...|+ .|.+.+++.. || +++.|.|.+.+...|. .++.+-+...++.++|
T Consensus 92 ~~v~~~Ei~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~l~~W~--~~~~L~~~~~lvV~~R 156 (243)
T PRK06973 92 VRVATDEIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLVRLDTWR--DWRRLFDYAHLCAATR 156 (243)
T ss_pred EEEeHhhhhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhhcCCcc--cHHHHHHhCCEEEEEC
Confidence 21 1 23343 3556666544 66 5889998777655442 2344444445555555
No 43
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.46 E-value=7.9e-13 Score=117.59 Aligned_cols=135 Identities=18% Similarity=0.103 Sum_probs=99.7
Q ss_pred CCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCC-CCCCCHHHHHHHHH-hcCCcce--E---ee
Q 023877 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLR-HCKWVDE--V---IP 91 (276)
Q Consensus 19 r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kg-rpi~s~eER~e~l~-~~r~VD~--V---i~ 91 (276)
.|++++++|+|||.|.||+.+.++|.+.++-|.|++..+..+ ..|. +..-|.++|++|++ +|+..+. | ..
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~---p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~ 78 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVP---PHKKKKELASAEHRLAMLELAIEDNPRFEVSDREI 78 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCC---CCCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHH
Confidence 578999999999999999999999999998898888777655 2343 46999999999999 6776544 2 11
Q ss_pred ---CCCCc-chHHHHh-hcCCCE---EEeCCCcccccCCCCchHHHHHHhcCeEEEccccC-------------------
Q 023877 92 ---DAPWV-VTQEFLD-KHQIDF---VAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTD------------------- 144 (276)
Q Consensus 92 ---~~p~~-~t~e~L~-~~~~D~---vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~------------------- 144 (276)
+..|+ .|.+.++ +++||. ++.|.|-......|. .++.+.+...|+..+|..
T Consensus 79 ~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~--~~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~~~ 156 (197)
T COG1057 79 KRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWY--DWDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLD 156 (197)
T ss_pred HcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhhhhh--hHHHHHHhCCEEEEecCCchhhhhhhhcCCceEEEcc
Confidence 33444 4566666 778884 788988766544442 245566667777665543
Q ss_pred ----CCChHHHHHHHHHh
Q 023877 145 ----GISTSDIIMRIVKD 158 (276)
Q Consensus 145 ----giSTT~Ii~rI~~~ 158 (276)
.+|||.|++++...
T Consensus 157 ~~~~~ISSt~IR~~~~~~ 174 (197)
T COG1057 157 LPRLDISSTEIRERIRRG 174 (197)
T ss_pred CccccCchHHHHHHHhCC
Confidence 48999999998664
No 44
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.43 E-value=1.5e-12 Score=113.19 Aligned_cols=130 Identities=12% Similarity=0.057 Sum_probs=87.1
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHH-hcCCc--ceEee-----
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWV--DEVIP----- 91 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~-~~r~V--D~Vi~----- 91 (276)
|++++++|+|||+|.||+.++++++ .+ |+|++..+... ..+ ++..+.++|++|++ +++.. +.+.+
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~~-~~--d~v~~vP~~~~---~~~-k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~ 74 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESLS-HF--DLVLLVPSIAH---AWG-KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQ 74 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHhh-cC--CEEEEEECCCC---ccc-CCCCCHHHHHHHHHHHHhccCCCceEEehHHh
Confidence 4688999999999999999999974 33 88988877632 112 36789999999999 45542 23322
Q ss_pred -----C-CCCc-chHHHHhhcCCC---EEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHHh
Q 023877 92 -----D-APWV-VTQEFLDKHQID---FVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKD 158 (276)
Q Consensus 92 -----~-~p~~-~t~e~L~~~~~D---~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~ 158 (276)
+ ..|+ .|.+.+++..|+ +++.|.|.+.+...|.+ ++.+.+.-.++..++...+|||+|++++..+
T Consensus 75 ~~~~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~--~~~i~~~~~l~~~~~~~~ISST~IR~~l~~g 149 (174)
T PRK08887 75 ELYAPDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAKFYK--ADEITQRWTVMACPEKVPIRSTDIRNALQNG 149 (174)
T ss_pred hhccCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHHHhCC--HHHHHhhCeEEEeCCCCCcCHHHHHHHHHcC
Confidence 1 1233 233444443343 46779987776554432 4445455556666877799999999998643
No 45
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.35 E-value=2.8e-12 Score=114.02 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=53.3
Q ss_pred eEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh-cCC
Q 023877 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKW 85 (276)
Q Consensus 21 ~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~-~r~ 85 (276)
..+++.|.|+|||.||+++|++|++.| |+|||||+|....+.. +.+||..||.+|++. ++.
T Consensus 5 d~~v~iGRFQPfH~GHl~~I~~al~~~--devII~IGSA~~s~t~--~NPFTa~ER~~MI~~aL~e 66 (196)
T PRK13793 5 DYLVFIGRFQPFHLAHMQTIEIALQQS--RYVILALGSAQMERNI--KNPFLAIEREQMILSNFSL 66 (196)
T ss_pred eEEEEEecCCCCcHHHHHHHHHHHHhC--CEEEEEEccCCCCCCC--CCCCCHHHHHHHHHHhcch
Confidence 578999999999999999999999997 8999999987765544 478999999999995 553
No 46
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.33 E-value=8.9e-12 Score=106.37 Aligned_cols=128 Identities=23% Similarity=0.270 Sum_probs=91.1
Q ss_pred CCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhc----CCcce-Ee-e
Q 023877 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC----KWVDE-VI-P 91 (276)
Q Consensus 18 ~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~----r~VD~-Vi-~ 91 (276)
.++..|.++|+||.+|.||-.+|+.|...+ +.+++|++||++++++|.+++.|++.|++.|... +.-.+ ++ +
T Consensus 3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~G--~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i 80 (158)
T COG1019 3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEIG--DRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEEIVPI 80 (158)
T ss_pred ccceEEEecccchhhhhhHHHHHHHHHHhC--CeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHHhcCCcceEEEe
Confidence 356679999999999999999999999994 7999999999999987777999999999988752 22122 33 3
Q ss_pred CCCCcchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcC----eEEEccc-----cCCCChHHHHHH
Q 023877 92 DAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKETKR-----TDGISTSDIIMR 154 (276)
Q Consensus 92 ~~p~~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G----~~~~~~r-----t~giSTT~Ii~r 154 (276)
++|++.|.+ .-.+|++|.....|... ..+-+.=.+.| +++.++. ...+|||.|++-
T Consensus 81 ~Dp~G~t~~---~~~~e~iVVS~ET~~~A----l~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrrg 145 (158)
T COG1019 81 DDPYGPTVE---DPDFEAIVVSPETYPGA----LKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRRG 145 (158)
T ss_pred cCCCCCCCC---cCceeEEEEccccchhH----HHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhhh
Confidence 889986544 24678888776555421 12222222346 4555542 237899988753
No 47
>PRK07143 hypothetical protein; Provisional
Probab=99.33 E-value=5.6e-11 Score=110.85 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=107.7
Q ss_pred eEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhc-cCCCCCCCHHHHHHHHHhcCCcceEeeCCCCc---
Q 023877 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHK-FKGKTVMTEDERYESLRHCKWVDEVIPDAPWV--- 96 (276)
Q Consensus 21 ~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~-~Kgrpi~s~eER~e~l~~~r~VD~Vi~~~p~~--- 96 (276)
..|++.|.||-+|.||..+|++|++. ++.++|...+++..-. .+..+++|.+||++.++++ .+|.+++- |++
T Consensus 16 ~~vvaiG~FDGvH~GHq~Ll~~a~~~--~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~-Gvd~~~~~-~F~~~~ 91 (279)
T PRK07143 16 KPTFVLGGFESFHLGHLELFKKAKES--NDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANL-GFKNIILL-DFNEEL 91 (279)
T ss_pred CeEEEEccCCcCCHHHHHHHHHHHHC--CCcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHC-CCCEEEEe-CCCHHH
Confidence 46899999999999999999999997 4788888877754321 1223599999999999998 46777651 221
Q ss_pred ---chHHHHhh---cCCCEEEeCCCcccccCCCCchHHHHHHhcC-eEEEcc----ccCCCChHHHHHHHHHhhHHHHHH
Q 023877 97 ---VTQEFLDK---HQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETK----RTDGISTSDIIMRIVKDYNQYVMR 165 (276)
Q Consensus 97 ---~t~e~L~~---~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~----rt~giSTT~Ii~rI~~~y~~y~~R 165 (276)
...+|++. .+++.++.|.|.-.+-...+ + .+.|++++ .+..++ ....||||.|++-|.+.--+-..+
T Consensus 92 a~ls~e~Fi~~ll~l~~~~iVvG~Df~FG~~r~G-~-~~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~G~i~~A~~ 169 (279)
T PRK07143 92 QNLSGNDFIEKLTKNQVSFFVVGKDFRFGKNASW-N-ADDLKEYFPNVHIVEILKINQQKISTSLLKEFIEFGDIELLNS 169 (279)
T ss_pred hCCCHHHHHHHHHhcCCCEEEECCCcccCCCCCC-C-HHHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHcCCHHHHHH
Confidence 23456665 78999999997655432222 2 56788887 566554 234799999999998777677777
Q ss_pred HhhcCCCccc
Q 023877 166 NLDRGYSRKD 175 (276)
Q Consensus 166 nl~rg~~~~~ 175 (276)
-|-|-|+..-
T Consensus 170 lLGr~y~i~G 179 (279)
T PRK07143 170 LLLYNYSISI 179 (279)
T ss_pred HcCCCcEEEE
Confidence 7777666554
No 48
>PLN02388 phosphopantetheine adenylyltransferase
Probab=99.33 E-value=2.1e-11 Score=106.89 Aligned_cols=133 Identities=15% Similarity=0.193 Sum_probs=90.3
Q ss_pred CCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccC-CCCCCCHHHHHHHHHh-cCCc------ceEe
Q 023877 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFK-GKTVMTEDERYESLRH-CKWV------DEVI 90 (276)
Q Consensus 19 r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~K-grpi~s~eER~e~l~~-~r~V------D~Vi 90 (276)
....|++.|+||.+|.||..+|.+|.+++ .+.++||+++|+...+.+ ...+.|.++|.+.|+. +..+ +-+-
T Consensus 18 ~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a-~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~i~~ 96 (177)
T PLN02388 18 SYGAVVLGGTFDRLHDGHRLFLKAAAELA-RDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKSIKPELVVQAEP 96 (177)
T ss_pred cCCeEEEEecCCccCHHHHHHHHHHHHhh-hcCEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 34579999999999999999999999986 458999999999864422 1359999999999986 3221 2223
Q ss_pred eCCCCcchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcC----eEEEcc---c---cCCCChHHHHHHHHHhh
Q 023877 91 PDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKETK---R---TDGISTSDIIMRIVKDY 159 (276)
Q Consensus 91 ~~~p~~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G----~~~~~~---r---t~giSTT~Ii~rI~~~y 159 (276)
+.+||+.+.. ..++|++|.....+.. +..+=+.=++.| .++.++ . ...+|||.|+++..+..
T Consensus 97 i~D~~Gpt~~---~~~~d~LVVS~ET~~g----~~~IN~~R~e~Gl~pL~i~~v~~v~~~~~~~kiSST~iR~~~~~~~ 168 (177)
T PLN02388 97 IIDPYGPSIV---DENLEAIVVSKETLPG----GLSVNKKRAERGLSQLKIEVVDIVPEESTGNKLSSTTLRRLEAEKA 168 (177)
T ss_pred ecCCCCCccc---CCCCCEEEEcHhHhhh----HHHHHHHHHHCCCCCeEEEEEEeEecCCCCCccCHHHHHHHHHHHH
Confidence 4789986532 3578999988754432 111111112334 233321 1 35899999999876544
No 49
>PRK13671 hypothetical protein; Provisional
Probab=99.27 E-value=4.7e-11 Score=112.29 Aligned_cols=89 Identities=26% Similarity=0.309 Sum_probs=72.5
Q ss_pred EEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCC-CCCHHHHHHHHHhcCCcceEee-CCCCcc---
Q 023877 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKT-VMTEDERYESLRHCKWVDEVIP-DAPWVV--- 97 (276)
Q Consensus 23 V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrp-i~s~eER~e~l~~~r~VD~Vi~-~~p~~~--- 97 (276)
+-+.-+|||||.||+.++++|++.++.|.+|+..+.+. + .||.| +++.++|++|++.+ .||.|+. |.+|..
T Consensus 3 ~GIIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~-~--qrg~pa~~~~~~R~~ma~~~-G~DLViELP~~~a~~sA 78 (298)
T PRK13671 3 IGIIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY-T--QRGEIAVASFEKRKKIALKY-GVDKVIKLPFEYATQAA 78 (298)
T ss_pred eeEEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC-C--CCCCCCCCCHHHHHHHHHHc-CCCEEEeccHHHHhhch
Confidence 34556899999999999999999988899888777765 3 35665 66999999999998 8999986 445542
Q ss_pred ------hHHHHhhcCCCEEEeCCC
Q 023877 98 ------TQEFLDKHQIDFVAHDSL 115 (276)
Q Consensus 98 ------t~e~L~~~~~D~vv~G~d 115 (276)
....|.+.++|.++.|.+
T Consensus 79 e~FA~gaV~lL~~lgvd~l~FGsE 102 (298)
T PRK13671 79 HIFAKGAIKKLNKEKIDKLIFGSE 102 (298)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCC
Confidence 356888899999999973
No 50
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.19 E-value=2.1e-10 Score=111.64 Aligned_cols=132 Identities=18% Similarity=0.190 Sum_probs=88.5
Q ss_pred CCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhh-----hccCCCCCCCHHHHHHHHHh-cCCcceEee
Q 023877 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETT-----HKFKGKTVMTEDERYESLRH-CKWVDEVIP 91 (276)
Q Consensus 18 ~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~-----~~~Kgrpi~s~eER~e~l~~-~r~VD~Vi~ 91 (276)
...+++++.|+|||+|.||+.++++|++++ |.|+|+|++++.- ...|.+..+|.++|++|++. ++..+.|.+
T Consensus 50 ~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~--d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v 127 (399)
T PRK08099 50 QMKKIGVVFGKFYPLHTGHIYLIQRACSQV--DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKI 127 (399)
T ss_pred hcCcEEEEEEecCCCCHHHHHHHHHHHHHC--CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 344689999999999999999999999997 7889998877521 11122468999999999995 566544422
Q ss_pred ---------CCC-----Cc-chHHHHhhc--CCCEEEeCCCcccccCCCCchHHHHHHhcC-eEEEcc--cc-CCCChHH
Q 023877 92 ---------DAP-----WV-VTQEFLDKH--QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETK--RT-DGISTSD 150 (276)
Q Consensus 92 ---------~~p-----~~-~t~e~L~~~--~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~--rt-~giSTT~ 150 (276)
+.| |. .....+.+. ++|+++.|.+ |. .+.| ++..| +++.++ |. ..||+|.
T Consensus 128 ~~~~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~-~d------~~~~--~~~~~~~~~~vd~~r~~~~iSaT~ 198 (399)
T PRK08099 128 HAFNEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEE-QD------APQY--EEHLGIETVLVDPKRTFMNISGTQ 198 (399)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCC-CC------hHHH--HHhcCCceeeeccccccCCcCHHH
Confidence 222 32 112233332 6899988863 21 1223 44446 555554 43 4799999
Q ss_pred HHHHHHHhhH
Q 023877 151 IIMRIVKDYN 160 (276)
Q Consensus 151 Ii~rI~~~y~ 160 (276)
|++...+.|+
T Consensus 199 IR~~p~~~w~ 208 (399)
T PRK08099 199 IRENPFRYWE 208 (399)
T ss_pred HhhCHHHHHH
Confidence 9998877765
No 51
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.18 E-value=1.8e-11 Score=97.24 Aligned_cols=57 Identities=21% Similarity=0.173 Sum_probs=49.5
Q ss_pred EEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhc
Q 023877 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC 83 (276)
Q Consensus 23 V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~ 83 (276)
+++.|+|||+|.||+.++++|++++ +.++|++..++.... + .++.+.++|.++++++
T Consensus 2 ~~~~G~Fdp~H~GH~~l~~~a~~~~--d~~i~~i~~~~~~~~-~-~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEPGYLHIGHAKLICRAKGIA--DQCVVRIDDNPPVKV-W-QDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhC--CcEEEEEcCCCcccc-c-CChHHHHHHHHHHHHH
Confidence 7899999999999999999999997 789999998875432 2 2689999999999987
No 52
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.17 E-value=1.4e-10 Score=101.20 Aligned_cols=127 Identities=18% Similarity=0.178 Sum_probs=85.4
Q ss_pred CCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHH-hcCC--cc-eE-eeCC
Q 023877 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKW--VD-EV-IPDA 93 (276)
Q Consensus 19 r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~-~~r~--VD-~V-i~~~ 93 (276)
+|+++++.|.|+|||.||+..+++|.+.. |+|||+|+||...+..+ .++|..||..|++ +++. .| .+ +.+.
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~v--DeliI~iGSa~~~~t~~--nPfTagER~~mi~~~L~~~~~~~r~~~~~v 77 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKV--DELIIVIGSAQESHTLK--NPFTAGERIPMIRDRLREAGLDLRVYLRPV 77 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhC--CEEEEEEccCccccccc--CCCCccchhHHHHHHHHhcCCCceEEEEec
Confidence 67899999999999999999999999995 99999999998776544 6899999999999 5652 33 22 2221
Q ss_pred C-Cc---chHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcC-eEEEccc--cCCCChHHHHHHHHH
Q 023877 94 P-WV---VTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKR--TDGISTSDIIMRIVK 157 (276)
Q Consensus 94 p-~~---~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~r--t~giSTT~Ii~rI~~ 157 (276)
+ +. +-..+++...|-+-.. |. +..-+....++.| ++.+.+- ...+|.|.++.+++.
T Consensus 78 ~d~~~n~i~v~~v~~~~p~~~~~----~~----~n~~v~~lf~~~~~~~~~p~~f~~~e~~~t~ir~~~~~ 140 (172)
T COG1056 78 FDIEYNDIWVAYVEDLVPPFDVV----YT----WNPWVARLFHEKGEKVYYPPMFPRWEYSGTAIRRKMLG 140 (172)
T ss_pred CccccchhhHHHHhhcCCCcccc----CC----CCHHHHHHHhhcCceeecCCcccccccccchHHHHhhc
Confidence 1 11 1123444444433211 11 2223344556667 6666552 347888899888765
No 53
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=99.17 E-value=3.9e-10 Score=106.87 Aligned_cols=65 Identities=18% Similarity=0.081 Sum_probs=54.0
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHH-hcCCcce
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDE 88 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~-~~r~VD~ 88 (276)
|+++++.|+|||+|.||+.++++|++++ |+|+|.+++... +. |.++.+|.++|++|++ +++....
T Consensus 1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~--d~v~v~~~~~~~-~~-~~~~~~~~~~R~~~l~~~~~~~~~ 66 (325)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKV--DELHIVVGSLFY-DS-KAKRPPPVQDRLRWLREIFKYQKN 66 (325)
T ss_pred CcEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCc-Cc-cCCCCCCHHHHHHHHHHHhccCCC
Confidence 4689999999999999999999999997 999999987431 11 3358899999999999 5676665
No 54
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.13 E-value=1.1e-09 Score=102.88 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=86.9
Q ss_pred CCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh-cCCcceEee-----
Q 023877 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIP----- 91 (276)
Q Consensus 18 ~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~-~r~VD~Vi~----- 91 (276)
+-.+++-+.|+|||+|.||++++++|.+.+ |.++|.+.+. + .+.+|.++|++|++. ++..+.+.+
T Consensus 112 ~~~~~~~~~~~FDPiH~GHl~ii~~a~~~~--d~~~V~i~~~------~-~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~ 182 (297)
T cd02169 112 PGKKIAAIVMNANPFTLGHRYLVEKAAAEN--DWVHLFVVSE------D-KSLFSFADRFKLVKKGTKHLKNVTVHSGGD 182 (297)
T ss_pred CCCceEEEEecCCCCchHHHHHHHHHHhhC--CeEEEEEEcC------C-CCCCCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 345688999999999999999999999998 5566666543 1 468999999999994 554332211
Q ss_pred ------CCC-C-------------c-chHHHH----hhcCCCEEEeCCCcccccCCCCchHHHHHH---hcC-eEEEccc
Q 023877 92 ------DAP-W-------------V-VTQEFL----DKHQIDFVAHDSLPYADASGAGKDVYEFVK---AAG-KFKETKR 142 (276)
Q Consensus 92 ------~~p-~-------------~-~t~e~L----~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk---~~G-~~~~~~r 142 (276)
.-| | . ...+|+ +++++..++.|.|...+....++ ...++ +.| .+..++.
T Consensus 183 l~v~~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~iL~~~l~~~~ivvG~Df~FG~~r~G~--~~l~~~~~~~gf~v~~v~~ 260 (297)
T cd02169 183 YIISSATFPSYFIKEQDVVIKAQTALDARIFRKYIAPALNITKRYVGEEPFSRVTAIYN--QTMQEELLSPAIEVIEIER 260 (297)
T ss_pred eeeccccChhhhcCChhHHHHHHhcCCHHHHHHHHHHHcCCcEEEEcCCCCCCCcchhH--HHHHHhcccCCCEEEEecc
Confidence 011 0 0 022454 35689999999977665432333 22222 235 4555432
Q ss_pred ----cCCCChHHHHHHHHHhhH
Q 023877 143 ----TDGISTSDIIMRIVKDYN 160 (276)
Q Consensus 143 ----t~giSTT~Ii~rI~~~y~ 160 (276)
...||||.|++-|.+.--
T Consensus 261 ~~~~g~~ISST~IR~~l~~G~v 282 (297)
T cd02169 261 KKYDGQPISASTVRQLLKEGNL 282 (297)
T ss_pred cccCCcEEcHHHHHHHHHcCCH
Confidence 347899999999876653
No 55
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=99.13 E-value=3.5e-10 Score=102.23 Aligned_cols=64 Identities=25% Similarity=0.220 Sum_probs=45.9
Q ss_pred EEEEcccccCCChHHHHHHHHHhhhCCCCe--EEE-E---EcCChhhhccCCCCCCCHHHHHHHHH-hcCCcceE
Q 023877 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTY--LLV-G---CCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEV 89 (276)
Q Consensus 22 ~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~--LIV-G---V~sD~~~~~~Kgrpi~s~eER~e~l~-~~r~VD~V 89 (276)
+.+++|+|||+|.||+.++++|.+.++.+. .+| + .+.+. ..| ....+.++|++|++ ++...+.+
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~---~~k-~~~~~~~~Rl~Ml~lai~~~~~~ 72 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDA---YGK-KGLASAKHRVAMCRLAVQSSDWI 72 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccC---CCC-CCCCCHHHHHHHHHHHHccCCCE
Confidence 578899999999999999999998875443 122 2 22332 123 46789999999999 67655444
No 56
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.11 E-value=1.3e-09 Score=95.87 Aligned_cols=122 Identities=17% Similarity=0.207 Sum_probs=80.7
Q ss_pred cccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHH-hcCCcceEe---------eC--C
Q 023877 26 DGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVI---------PD--A 93 (276)
Q Consensus 26 ~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~-~~r~VD~Vi---------~~--~ 93 (276)
.-.|||+|.||++++++|.+.+ +.++|++.+. + .+.+|.++|++|++ +++..+.|. .+ .
T Consensus 5 ~~~~DPiH~GHl~i~~~a~~~~--d~~~V~v~p~------~-~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~ 75 (182)
T smart00764 5 VMNANPFTLGHRYLVEQAAAEC--DWVHLFVVSE------D-ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATF 75 (182)
T ss_pred EECCCCCCHHHHHHHHHHHHHC--CceEEEEEeC------C-CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccC
Confidence 3479999999999999999998 5555555543 1 36789999999999 465433221 11 1
Q ss_pred C--C------------c-chHHHH----hhcCCCEEEeCCCcccccCCCCchHHHHHHh---cC-eEEEccc----cCCC
Q 023877 94 P--W------------V-VTQEFL----DKHQIDFVAHDSLPYADASGAGKDVYEFVKA---AG-KFKETKR----TDGI 146 (276)
Q Consensus 94 p--~------------~-~t~e~L----~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~---~G-~~~~~~r----t~gi 146 (276)
| + . ...+|+ +++++..++.|.|...+-...|+ .+.+++ .| ++..++| ...+
T Consensus 76 ~~~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~--~~~L~~~~~~g~~v~~I~r~~~~g~~i 153 (182)
T smart00764 76 PSYFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYN--QTMKQTLLSPAIEVVEIERKKANGQPI 153 (182)
T ss_pred hhhhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccC--HHHHHHHhhCCCEEEEEecccCCCcEE
Confidence 1 1 0 123454 35789999999976665433333 334444 35 5676666 4468
Q ss_pred ChHHHHHHHHHh
Q 023877 147 STSDIIMRIVKD 158 (276)
Q Consensus 147 STT~Ii~rI~~~ 158 (276)
|||.|++-|.+.
T Consensus 154 SST~IR~~L~~G 165 (182)
T smart00764 154 SASTVRKLLKEG 165 (182)
T ss_pred CHHHHHHHHHcC
Confidence 999999988653
No 57
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.06 E-value=1.6e-09 Score=103.35 Aligned_cols=125 Identities=17% Similarity=0.205 Sum_probs=85.7
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh-cCCcceEee--CCCCc
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIP--DAPWV 96 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~-~r~VD~Vi~--~~p~~ 96 (276)
.+++.+.|+|||||.||+.++++|.++| |.|+|+|..+ + ++.+|.++|++|++. ++..+.|.+ ...+.
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~--d~~~v~v~~~------~-~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~~~ 209 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQC--DWLHLFVVKE------D-ASLFSYDERFALVKQGIQDLSNVTVHNGSAYI 209 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHHC--CEEEEEEEeC------C-CCCCCHHHHHHHHHHHhcCCCCEEEEecCCce
Confidence 4689999999999999999999999998 7888888642 2 479999999999994 666555432 11111
Q ss_pred c-----------------------hHH-----HHhhcCCCEEEeCCCcccccCCCCchHHHH-HH----h----cC-eEE
Q 023877 97 V-----------------------TQE-----FLDKHQIDFVAHDSLPYADASGAGKDVYEF-VK----A----AG-KFK 138 (276)
Q Consensus 97 ~-----------------------t~e-----~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~-lk----~----~G-~~~ 138 (276)
+ ... +...++|..-..|..|+.... ..|.. ++ + .+ +++
T Consensus 210 is~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~t----~~yn~~m~~~~~~~~~~~~I~~~ 285 (332)
T TIGR00124 210 ISRATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPVT----ALYNQKMKYWLEEPNDAPPIEVV 285 (332)
T ss_pred eccccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHhH----HHHHHHHHHhhhccCCCCCcEEE
Confidence 1 001 112236666678888886532 34542 22 1 13 677
Q ss_pred Ecccc----CCCChHHHHHHHHH
Q 023877 139 ETKRT----DGISTSDIIMRIVK 157 (276)
Q Consensus 139 ~~~rt----~giSTT~Ii~rI~~ 157 (276)
.++|. ..+|+|.||+.|.+
T Consensus 286 ~I~R~~~~~~~~SASaIR~~L~~ 308 (332)
T TIGR00124 286 EIQRKLAAGGPISASTVRELLAK 308 (332)
T ss_pred EEeeecCCCCeeCHHHHHHHHHc
Confidence 88883 36899999998854
No 58
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=99.04 E-value=3.6e-09 Score=96.12 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=44.7
Q ss_pred CCCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeE-EEE--EcCChhhhccCCCCCCCHHHHHHHHH-hcCCc
Q 023877 17 SDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYL-LVG--CCNDETTHKFKGKTVMTEDERYESLR-HCKWV 86 (276)
Q Consensus 17 ~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~L-IVG--V~sD~~~~~~Kgrpi~s~eER~e~l~-~~r~V 86 (276)
...-.+.+++|+|||+|.||+.+++.|++....+.+ +|+ +.+.... ..| ....+.++|++|++ ++..-
T Consensus 19 ~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~-~~k-~~~~~~~~Rl~Ml~lai~~~ 90 (236)
T PLN02945 19 PRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDA-YKK-KGLASAEHRIQMCQLACEDS 90 (236)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcc-ccc-CCCCCHHHHHHHHHHHhcCC
Confidence 333456778889999999999999998887643432 332 2221110 112 25679999999998 56543
No 59
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=98.89 E-value=1.8e-09 Score=105.01 Aligned_cols=91 Identities=22% Similarity=0.284 Sum_probs=43.6
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCC-CCCHHHHHHHHHhcCCcceEee-CCCCcc
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKT-VMTEDERYESLRHCKWVDEVIP-DAPWVV 97 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrp-i~s~eER~e~l~~~r~VD~Vi~-~~p~~~ 97 (276)
|+++-+.--|+|||.||..+|++||+..+.| .||+|.|-.+++ .|.| +++...|++|...+ .||.|+. |.+|.+
T Consensus 1 Mk~~GIIaEYNPFHnGH~y~i~~~k~~~~ad-~ii~vMSGnFvQ--RGEPAi~dKw~RA~~AL~~-GaDLViELP~~~a~ 76 (388)
T PF05636_consen 1 MKVVGIIAEYNPFHNGHLYQIEQAKKITGAD-VIIAVMSGNFVQ--RGEPAIIDKWTRAEMALKN-GADLVIELPVVYAL 76 (388)
T ss_dssp ------E---TT--HHHHHHHHHHH---TSS-EEEEEE--TTSB--TSSB-SS-HHHHHHHHHHH-T-SEEEE---G---
T ss_pred CCCCCeEEeECCccHHHHHHHHHHhccCCCC-EEEEEECCCccc--CCCeeeCCHHHHHHHHHHc-CCCEEEECCCcccc
Confidence 5666777889999999999999999999766 577788888998 4776 99999999997766 5999986 555532
Q ss_pred ---------hHHHHhhcCCCEEEeCC
Q 023877 98 ---------TQEFLDKHQIDFVAHDS 114 (276)
Q Consensus 98 ---------t~e~L~~~~~D~vv~G~ 114 (276)
....|.+.++|.++.|.
T Consensus 77 qsA~~FA~gaV~lL~~lgvd~l~FGs 102 (388)
T PF05636_consen 77 QSAEYFARGAVSLLNALGVDYLSFGS 102 (388)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 23577888999999996
No 60
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=98.78 E-value=1.1e-07 Score=89.32 Aligned_cols=147 Identities=14% Similarity=0.137 Sum_probs=91.8
Q ss_pred EEEcccccCCChHHHHHHHHHhhhC---CCCeEEEEEcCChhh--hccCCCCCCCHHHHHHHHHhcCCcceEeeCCCC--
Q 023877 23 VYADGIYDLFHFGHARSLEQAKKSF---PNTYLLVGCCNDETT--HKFKGKTVMTEDERYESLRHCKWVDEVIPDAPW-- 95 (276)
Q Consensus 23 V~~~G~FD~fH~GHl~~L~qAk~l~---~~d~LIVGV~sD~~~--~~~Kgrpi~s~eER~e~l~~~r~VD~Vi~~~p~-- 95 (276)
+++-|.||-+|.||..+|++|++.. +..-+++-..+.+.. ...+...+++.+||.+.++.+ .||.+++- |+
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~-Gvd~~~~~-~F~~ 78 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK-GVEQLLVV-VFDE 78 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc-CCCEEEEe-CCCH
Confidence 4788999999999999999998652 113344444444322 111112389999999999998 58888651 22
Q ss_pred ---cc-hHHHHh-----hcCCCEEEeCCCcccccCCCCchHHHHHHhc----C-eEEEcc---ccCCCChHHHHHHHHHh
Q 023877 96 ---VV-TQEFLD-----KHQIDFVAHDSLPYADASGAGKDVYEFVKAA----G-KFKETK---RTDGISTSDIIMRIVKD 158 (276)
Q Consensus 96 ---~~-t~e~L~-----~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~----G-~~~~~~---rt~giSTT~Ii~rI~~~ 158 (276)
.+ ..+|++ ++++..++.|.|...+-...++ .+.++++ | .+..++ ....+|||.|++-|.+.
T Consensus 79 ~~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~--~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~G 156 (288)
T TIGR00083 79 EFANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGD--FLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKNG 156 (288)
T ss_pred HHHcCCHHHHHHHHHHhccCCcEEEECCCccCCCCCCCC--HHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHcC
Confidence 12 234553 3678999999976544322222 3445554 4 333332 22579999999998776
Q ss_pred hHHHHHHHhhcCCCc
Q 023877 159 YNQYVMRNLDRGYSR 173 (276)
Q Consensus 159 y~~y~~Rnl~rg~~~ 173 (276)
--+...+-|-|-|+.
T Consensus 157 ~i~~A~~lLGr~y~i 171 (288)
T TIGR00083 157 DLELANKLLGRPYFI 171 (288)
T ss_pred CHHHHHHhhhhhhcc
Confidence 655555555554443
No 61
>PRK13670 hypothetical protein; Provisional
Probab=98.65 E-value=1e-07 Score=92.72 Aligned_cols=92 Identities=22% Similarity=0.174 Sum_probs=70.5
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCC-CCCCHHHHHHHHHhcCCcceEee-CCCCc-
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGK-TVMTEDERYESLRHCKWVDEVIP-DAPWV- 96 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgr-pi~s~eER~e~l~~~r~VD~Vi~-~~p~~- 96 (276)
|+++-+.--|||||.||..+|++|++..+. .++++|.|-.++++ |. ++++.++|++++..+ .||.|++ +..+.
T Consensus 1 Mk~~GIIaEfdg~H~GH~~~i~~a~~~a~~-~~~~~Vmp~~f~qr--g~p~i~~~~~R~~~a~~~-GvD~vielpf~~a~ 76 (388)
T PRK13670 1 MKVTGIIVEYNPFHNGHLYHLNQAKKLTNA-DVTIAVMSGNFVQR--GEPAIVDKWTRAKMALEN-GVDLVVELPFLYSV 76 (388)
T ss_pred CceeEEEeeeCCcCHHHHHHHHHHHHHHhC-CCcEEEecHHHhCC--CCCCCCCHHHHHHHHHHc-CCCEEEEeCCchHh
Confidence 566777889999999999999999998755 45666667777765 43 399999999999987 6999976 33332
Q ss_pred chH-HH-------HhhcCCCEEEeCCC
Q 023877 97 VTQ-EF-------LDKHQIDFVAHDSL 115 (276)
Q Consensus 97 ~t~-e~-------L~~~~~D~vv~G~d 115 (276)
.++ +| |.+.++|.++.|.|
T Consensus 77 ~sae~F~~~aV~iL~~l~v~~lv~G~e 103 (388)
T PRK13670 77 QSADFFAEGAVSILDALGVDSLVFGSE 103 (388)
T ss_pred CCHHHHHHhHHHHHHHcCCCEEEEcCC
Confidence 222 24 44578999999986
No 62
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=98.59 E-value=5.2e-07 Score=85.37 Aligned_cols=151 Identities=21% Similarity=0.231 Sum_probs=95.1
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeE-EEEEcCChhhhc-cCC-C---CCCCHHHHHHHHHhcCCcceEee--
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYL-LVGCCNDETTHK-FKG-K---TVMTEDERYESLRHCKWVDEVIP-- 91 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~L-IVGV~sD~~~~~-~Kg-r---pi~s~eER~e~l~~~r~VD~Vi~-- 91 (276)
...|++-|.||=+|.||..+|++|++....+.+ .+.++-++.-.. .+. . -+++.++|.+.++.+. ||.+++
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~g-vd~~~v~~ 93 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYG-VDALVVLD 93 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcC-CcEEEEEe
Confidence 456999999999999999999999954321222 333333322111 111 1 2899999999999884 888865
Q ss_pred -CCCCc--chHHHHh----hcCCCEEEeCCCcccccCCCCchHHHHHHhcC----eEEEcc--ccC--CCChHHHHHHHH
Q 023877 92 -DAPWV--VTQEFLD----KHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKETK--RTD--GISTSDIIMRIV 156 (276)
Q Consensus 92 -~~p~~--~t~e~L~----~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G----~~~~~~--rt~--giSTT~Ii~rI~ 156 (276)
+..+. ...+|++ .+++..++.|.|...+-...++ .+.++..| .+..+| ..+ .+|||.|++-+.
T Consensus 94 F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~--~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~ 171 (304)
T COG0196 94 FDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGN--AELLRELGQKGFEVTIVPKINEEGIRISSTAIRQALR 171 (304)
T ss_pred CCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCCCCCC--HHHHHHhccCCceEEEeccEecCCcEEchHHHHHHHh
Confidence 11111 1234544 7899999999875544221221 34455554 355554 233 499999999987
Q ss_pred HhhHHHHHHHhhcCCCc
Q 023877 157 KDYNQYVMRNLDRGYSR 173 (276)
Q Consensus 157 ~~y~~y~~Rnl~rg~~~ 173 (276)
+.--+...+-|-|-|+.
T Consensus 172 ~gdl~~A~~lLG~py~i 188 (304)
T COG0196 172 EGDLEEANKLLGRPYSI 188 (304)
T ss_pred cCCHHHHHHhcCCCeEE
Confidence 77666666666665553
No 63
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=98.52 E-value=1.6e-07 Score=80.62 Aligned_cols=127 Identities=20% Similarity=0.236 Sum_probs=70.2
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCC-CC--eEEEEEcCChhhhcc--C-CCCCCCHHHHHHHHHhcCCcceEee-C
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFP-NT--YLLVGCCNDETTHKF--K-GKTVMTEDERYESLRHCKWVDEVIP-D 92 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~-~d--~LIVGV~sD~~~~~~--K-grpi~s~eER~e~l~~~r~VD~Vi~-~ 92 (276)
...+++-|.||=+|.||..++++|.+... .+ -+++-...++...-. + ...++|.+||.+.++.+ .||.+++ +
T Consensus 5 ~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~-Gvd~~~~~~ 83 (157)
T PF06574_consen 5 KKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL-GVDYVIVIP 83 (157)
T ss_dssp S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT-TESEEEEE-
T ss_pred CCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc-CCCEEEEec
Confidence 34699999999999999999999988741 12 233333344322111 1 12499999999999997 5888765 2
Q ss_pred -CC---CcchHHHHhh-----cCCCEEEeCCCcccccCCCCchHHHHHHhc----C-eEEEccc----cCCCChH
Q 023877 93 -AP---WVVTQEFLDK-----HQIDFVAHDSLPYADASGAGKDVYEFVKAA----G-KFKETKR----TDGISTS 149 (276)
Q Consensus 93 -~p---~~~t~e~L~~-----~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~----G-~~~~~~r----t~giSTT 149 (276)
++ .....+|++. +++..++.|.|.-.+....+ + .+.++++ | .+..++. ...||||
T Consensus 84 F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G-~-~~~L~~~~~~~g~~v~~v~~~~~~~~~ISSt 156 (157)
T PF06574_consen 84 FTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSG-D-VELLKELGKEYGFEVEVVPPVKIDGEKISST 156 (157)
T ss_dssp CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEE-E-HHHHHHCTTTT-SEEEEE---EETTEE-SHH
T ss_pred chHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCC-C-HHHHHHhcccCceEEEEECCEEcCCcEeCCC
Confidence 11 1234466654 57889999997554432111 2 3445554 4 4555542 2467877
No 64
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=98.48 E-value=5.6e-07 Score=82.67 Aligned_cols=103 Identities=23% Similarity=0.244 Sum_probs=74.6
Q ss_pred CCCCCCCCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCC-CCCCHHHHHHHHHh----cCC-
Q 023877 12 TDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGK-TVMTEDERYESLRH----CKW- 85 (276)
Q Consensus 12 ~~~~~~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgr-pi~s~eER~e~l~~----~r~- 85 (276)
..+.+...-.++.++|+||-+|.||--+|..|..+. -+.|||||+.|+...+.+-+ -+-|.++|.+-|.. ++.
T Consensus 134 e~~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la-~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~Fl~~IKp~ 212 (293)
T KOG3351|consen 134 EKSGPANKFMVVALGGTFDRLHDGHKVLLSVAAELA-SDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSNFLKSIKPD 212 (293)
T ss_pred ccccchhcceeEEeccchhhhccchHHHHHHHHHHh-hceEEEEecChHHHHHhHHHHHhhhHHHHHHHHHHHHHhcCCC
Confidence 444566667789999999999999999999999887 79999999999988753322 48999999997764 332
Q ss_pred --cceEeeCCCCcchHHHHhhcCCCEEEeCCCccc
Q 023877 86 --VDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYA 118 (276)
Q Consensus 86 --VD~Vi~~~p~~~t~e~L~~~~~D~vv~G~d~y~ 118 (276)
|+.|-+-+||+++. ..-.++++|.....+.
T Consensus 213 l~~~~vpi~Dp~GPt~---~d~elE~lVVS~ET~~ 244 (293)
T KOG3351|consen 213 LNVRVVPIHDPFGPTI---TDPELEALVVSEETKT 244 (293)
T ss_pred ceEEEEecccCCCCCc---cCCcceEEEEeecccc
Confidence 33333467887432 2345677776654443
No 65
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=98.46 E-value=1.5e-06 Score=76.49 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=83.5
Q ss_pred cccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh-cCCcceEee--CCCCcc-------
Q 023877 28 IYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIP--DAPWVV------- 97 (276)
Q Consensus 28 ~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~-~r~VD~Vi~--~~p~~~------- 97 (276)
.=+||+.||..++++|++.+ |.|.|-|-+.+ +..||.++|++||+. ++..+.|.+ ..+|-+
T Consensus 7 NaNPFT~GH~yLiE~Aa~~~--d~l~vFVV~eD-------~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPs 77 (182)
T PF08218_consen 7 NANPFTLGHRYLIEQAAKEC--DWLHVFVVSED-------RSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPS 77 (182)
T ss_pred cCCCCccHHHHHHHHHHHhC--CEEEEEEEccc-------cCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChh
Confidence 45899999999999999996 88888887654 478999999999994 776666643 222211
Q ss_pred ----------------hHH-----HHhhcCCCEEEeCCCcccccCCCCchHHH-----HHHhcC-eEEEccccC----CC
Q 023877 98 ----------------TQE-----FLDKHQIDFVAHDSLPYADASGAGKDVYE-----FVKAAG-KFKETKRTD----GI 146 (276)
Q Consensus 98 ----------------t~e-----~L~~~~~D~vv~G~d~y~~~~~~~~d~y~-----~lk~~G-~~~~~~rt~----gi 146 (276)
... +...++|..-..|..|+.... ..|. ++...| +++++||.+ -|
T Consensus 78 YFlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT----~~YN~~M~~~Lp~~gi~v~ei~R~~~~g~~I 153 (182)
T PF08218_consen 78 YFLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVT----RIYNEAMKEILPPYGIEVVEIPRKEINGEPI 153 (182)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHH----HHHHHHHHHhccccCCEEEEEecccCCCcEE
Confidence 000 223347777788988886532 3343 444557 899999863 78
Q ss_pred ChHHHHHHHHHh
Q 023877 147 STSDIIMRIVKD 158 (276)
Q Consensus 147 STT~Ii~rI~~~ 158 (276)
|.|.+++.|.++
T Consensus 154 SAS~VR~~l~~~ 165 (182)
T PF08218_consen 154 SASRVRKLLKEG 165 (182)
T ss_pred cHHHHHHHHHcC
Confidence 999999888654
No 66
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=98.33 E-value=1.8e-06 Score=83.30 Aligned_cols=91 Identities=22% Similarity=0.254 Sum_probs=68.5
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCC-CCCHHHHHHHHHhcCCcceEee-------
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKT-VMTEDERYESLRHCKWVDEVIP------- 91 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrp-i~s~eER~e~l~~~r~VD~Vi~------- 91 (276)
|+.+-+.--|||||.||..+|++|++++++|..|+++.. +++++ |.| +++..+|.+|..+. .+|.||+
T Consensus 1 M~~~Gii~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msg-df~qR--gepai~~k~~r~~~aL~~-g~D~VIelP~~~s~ 76 (358)
T COG1323 1 MKSIGIIAEYNPFHNGHQYHINKAREEFKGDEIIAVMSG-DFTQR--GEPAIGHKWERKKMALEG-GADLVIELPLERSG 76 (358)
T ss_pred CCceeeeeecCcccccHHHHHHHHHHhccCCceEEeeec-chhhc--CCCccccHHHHHhhhhhc-CceEEEEcceEEec
Confidence 344555667999999999999999999876655555555 57764 454 99999999998876 5899986
Q ss_pred -CCCCc--chHHHHhhcCCCEEEeCC
Q 023877 92 -DAPWV--VTQEFLDKHQIDFVAHDS 114 (276)
Q Consensus 92 -~~p~~--~t~e~L~~~~~D~vv~G~ 114 (276)
.++|- -....+..+++|.++.|.
T Consensus 77 q~a~~fa~~av~il~~l~~~~i~fgs 102 (358)
T COG1323 77 QGAPYFATRAVRILNALGGDDIAFGS 102 (358)
T ss_pred CCCchhhHHHHHHHHhcCCCeEEEeC
Confidence 23332 234577788999999987
No 67
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=97.72 E-value=0.00022 Score=64.37 Aligned_cols=121 Identities=19% Similarity=0.209 Sum_probs=79.3
Q ss_pred CCCCeEEEEcccccCCChHHHHHHHHHhhhC---CCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHH-hcCCcceEee-
Q 023877 17 SDRPVRVYADGIYDLFHFGHARSLEQAKKSF---PNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIP- 91 (276)
Q Consensus 17 ~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~---~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~-~~r~VD~Vi~- 91 (276)
...+...++.|+|+|...+|+++++-|+..- .+-+|+=|+.| +....+|.+...+...|+.|++ ++..-|.+-.
T Consensus 5 ~~~~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimS-PV~DaYkKKgLipa~hrv~~~ElAt~~Skwl~vD 83 (234)
T KOG3199|consen 5 EKTPVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMS-PVGDAYKKKGLIPAYHRVRMVELATETSKWLMVD 83 (234)
T ss_pred ccceEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEec-ccchhhhccccchhhhHHHHHHhhhccccceecc
Confidence 3455677889999999999999999999753 24467777765 3444466568999999999999 5665555543
Q ss_pred -----CCCCcchHHHHhhcC-----------------CCE---EEeCCC-------cccccCCCCchHHHHHHhcCeEEE
Q 023877 92 -----DAPWVVTQEFLDKHQ-----------------IDF---VAHDSL-------PYADASGAGKDVYEFVKAAGKFKE 139 (276)
Q Consensus 92 -----~~p~~~t~e~L~~~~-----------------~D~---vv~G~d-------~y~~~~~~~~d~y~~lk~~G~~~~ 139 (276)
+..|+-|...|+.|+ .|. +++|.| |+.+| +..|.-..++++|-++.
T Consensus 84 ~weslQ~~wt~T~~vlrHhqe~~~~kr~~~~~~~~~k~~~kVmLlcG~Dliesf~~p~~~w--~~~dl~~i~~~yGl~cv 161 (234)
T KOG3199|consen 84 GWESLQKEWTRTVKVLRHHQEELNRKRGGTELSPGTKSDVKVMLLCGGDLIESFGEPNLVW--KDEDLRTILGEYGLVCV 161 (234)
T ss_pred hhhhccHHHhhhhHHHHHHHHHHHHHhccccccccccCCceEEEEeCchHHHhccCCCCCc--chhhHHHHHhhCcEEEE
Confidence 344555555555442 222 344543 44334 45566667777776555
Q ss_pred c
Q 023877 140 T 140 (276)
Q Consensus 140 ~ 140 (276)
.
T Consensus 162 ~ 162 (234)
T KOG3199|consen 162 T 162 (234)
T ss_pred e
Confidence 4
No 68
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.20 E-value=0.0065 Score=57.66 Aligned_cols=132 Identities=13% Similarity=0.164 Sum_probs=85.9
Q ss_pred CCCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh-cCCcceEee--CC
Q 023877 17 SDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIP--DA 93 (276)
Q Consensus 17 ~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~-~r~VD~Vi~--~~ 93 (276)
..+.+++-+.-.-+||++||--+++||.+.| |.|-+-|-+++ +..+|+++|.+++.. +...+.|.+ +.
T Consensus 142 ~~gkkIgaIVMNANPFTLGH~YLVEqAaaqc--DwlHLFvV~eD-------~S~f~y~~R~~Lv~~G~~~l~Nvt~Hsgs 212 (352)
T COG3053 142 HPGKKIGAIVMNANPFTLGHRYLVEQAAAQC--DWLHLFVVKED-------SSLFPYEDRLDLVKKGTADLPNVTVHSGS 212 (352)
T ss_pred cCCCeeEEEEEeCCCccchhHHHHHHHHhhC--CEEEEEEEecc-------cccCCHHHHHHHHHHhhccCCceEEecCC
Confidence 3456688888889999999999999999996 88876665544 357999999999984 665554432 11
Q ss_pred CCc-----------------------chHH-----HHhhcCCCEEEeCCCcccccCCC-CchHHHHHHhcC------eEE
Q 023877 94 PWV-----------------------VTQE-----FLDKHQIDFVAHDSLPYADASGA-GKDVYEFVKAAG------KFK 138 (276)
Q Consensus 94 p~~-----------------------~t~e-----~L~~~~~D~vv~G~d~y~~~~~~-~~d~y~~lk~~G------~~~ 138 (276)
+|- +..+ +...++|.--..|..|....... ..+...|+.+.+ .++
T Consensus 213 dYiISrATFP~YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~vT~~YNq~M~~~L~~~~~~~p~I~vv 292 (352)
T COG3053 213 DYIISRATFPAYFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRVTAIYNQQMRYWLEDPTISAPPIEVV 292 (352)
T ss_pred CeEEEecccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcceeeecCCCCcHHHHHHHHHHHHHHhccCCCCCceEEE
Confidence 111 1111 22334677677787776532100 112334666643 567
Q ss_pred Ecccc----CCCChHHHHHHHHH
Q 023877 139 ETKRT----DGISTSDIIMRIVK 157 (276)
Q Consensus 139 ~~~rt----~giSTT~Ii~rI~~ 157 (276)
+++|. .-||.|.+++-+.+
T Consensus 293 ei~Rk~~~~~~ISAS~VR~~l~~ 315 (352)
T COG3053 293 EIERKKYQEMPISASRVRQLLAK 315 (352)
T ss_pred EeehhhhcCCcccHHHHHHHHHh
Confidence 77774 47899998887754
No 69
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=96.66 E-value=0.0058 Score=57.57 Aligned_cols=63 Identities=21% Similarity=0.135 Sum_probs=48.3
Q ss_pred EEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCC---CCCCCHHHHHHHHHhcCCcceEee
Q 023877 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG---KTVMTEDERYESLRHCKWVDEVIP 91 (276)
Q Consensus 23 V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kg---rpi~s~eER~e~l~~~r~VD~Vi~ 91 (276)
|.+-|. +|.||..++++|++.. +.+||.+..++..-.... +.+.|.+++.++++.+ .||.++.
T Consensus 27 VpTmG~---LH~GH~~LI~~a~~~a--~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~ 92 (282)
T TIGR00018 27 VPTMGN---LHDGHMSLIDRAVAEN--DVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFA 92 (282)
T ss_pred EECCCc---ccHHHHHHHHHHHHhC--CeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEEC
Confidence 557777 9999999999999995 788999987764321111 2488999999999987 5777765
No 70
>PLN02660 pantoate--beta-alanine ligase
Probab=96.45 E-value=0.0098 Score=56.08 Aligned_cols=65 Identities=18% Similarity=0.115 Sum_probs=49.1
Q ss_pred EEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhcc-C--CCCCCCHHHHHHHHHhcCCcceEeeC
Q 023877 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKF-K--GKTVMTEDERYESLRHCKWVDEVIPD 92 (276)
Q Consensus 22 ~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~-K--grpi~s~eER~e~l~~~r~VD~Vi~~ 92 (276)
.|.+-|. +|.||..++++|++.. +.+||.+..++..-.. + .+.+.|.+++.++++.+ .||.++.+
T Consensus 25 fVpTmG~---LH~GH~~LI~~a~~~a--~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P 92 (284)
T PLN02660 25 LVPTMGY---LHEGHLSLVRAARARA--DVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL-GVDAVFNP 92 (284)
T ss_pred EEEcCch---hhHHHHHHHHHHHHhC--CEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc-CCCEEECC
Confidence 3566677 9999999999999995 7888888877654211 1 12488999999999887 57777653
No 71
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=96.30 E-value=0.0095 Score=56.00 Aligned_cols=64 Identities=19% Similarity=0.148 Sum_probs=47.2
Q ss_pred EEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCC---CCCCCHHHHHHHHHhcCCcceEeeC
Q 023877 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG---KTVMTEDERYESLRHCKWVDEVIPD 92 (276)
Q Consensus 23 V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kg---rpi~s~eER~e~l~~~r~VD~Vi~~ 92 (276)
|.+-|. +|.||..++++|++.. +.+||.+..++..-.... ..+.|.++|.++++.+ .||.++.+
T Consensus 27 v~tmG~---lH~GH~~Li~~a~~~a--~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~p 93 (281)
T PRK00380 27 VPTMGA---LHEGHLSLVREARAEA--DIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFAP 93 (281)
T ss_pred EEccCc---eeHHHHHHHHHHHHhC--CEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEeC
Confidence 344455 9999999999999985 778888877764321111 2488999999999987 57877653
No 72
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=95.93 E-value=0.021 Score=53.64 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=48.5
Q ss_pred EEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhcc-C--CCCCCCHHHHHHHHHhcCCcceEee
Q 023877 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKF-K--GKTVMTEDERYESLRHCKWVDEVIP 91 (276)
Q Consensus 23 V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~-K--grpi~s~eER~e~l~~~r~VD~Vi~ 91 (276)
|.+-|. +|.||..++++|++.+ +.+||.+..++..-.. . ...+.+.+++.+.++.+ .||.++.
T Consensus 27 V~TmG~---LH~GH~~LI~~a~~~a--~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF~ 92 (277)
T cd00560 27 VPTMGA---LHEGHLSLVRRARAEN--DVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLFA 92 (277)
T ss_pred EECCCc---ccHHHHHHHHHHHHhC--CEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEEC
Confidence 556777 9999999999999995 8899999877643211 1 12488899999999986 5777754
No 73
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=94.89 E-value=0.22 Score=48.82 Aligned_cols=91 Identities=15% Similarity=0.055 Sum_probs=59.4
Q ss_pred eEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhc-CCc---ceEee-CCCC
Q 023877 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC-KWV---DEVIP-DAPW 95 (276)
Q Consensus 21 ~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~-r~V---D~Vi~-~~p~ 95 (276)
++|+..=+|||+|.||..++++|.+..+.|.|+|-..--+ .| ...++.+.|+++++.+ ... +.+++ ..|+
T Consensus 184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~----~k-~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~ 258 (383)
T TIGR00339 184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGL----TK-PGDIPAEVRMRAYEVLKEGYPNPERVMLTFLPL 258 (383)
T ss_pred CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCC----CC-CCCCCHHHHHHHHHHHHhhCCCCCceEEEecch
Confidence 4677789999999999999999999744576666554433 23 2689999999999964 322 23322 2222
Q ss_pred c-----chH---H--HHhhcCCCEEEeCCCc
Q 023877 96 V-----VTQ---E--FLDKHQIDFVAHDSLP 116 (276)
Q Consensus 96 ~-----~t~---e--~L~~~~~D~vv~G~d~ 116 (276)
. ... . +-+.+++.+++.|.|.
T Consensus 259 em~~agpreall~Aiir~nyG~th~IiG~Dh 289 (383)
T TIGR00339 259 AMRYAGPREAIWHAIIRKNYGATHFIVGRDH 289 (383)
T ss_pred HhhcCCcHHHHHHHHHHHHCCCCEEEECCCC
Confidence 1 111 1 2244578899998753
No 74
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=94.11 E-value=0.12 Score=48.72 Aligned_cols=62 Identities=23% Similarity=0.220 Sum_probs=36.2
Q ss_pred ccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCC---CCCCCHHHHHHHHHhcCCcceEee
Q 023877 27 GIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG---KTVMTEDERYESLRHCKWVDEVIP 91 (276)
Q Consensus 27 G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kg---rpi~s~eER~e~l~~~r~VD~Vi~ 91 (276)
-+---+|-||+.++++|++. +|.+||.|--++.--...- +.+-+.+.=++.++.. .||.|+.
T Consensus 28 PTMGaLHeGHlsLi~~A~~~--~d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~-gvD~vF~ 92 (280)
T PF02569_consen 28 PTMGALHEGHLSLIRRARAE--NDVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA-GVDAVFA 92 (280)
T ss_dssp EE-SS--HHHHHHHHHHHHH--SSEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT-T-SEEE-
T ss_pred CCCchhhHHHHHHHHHHHhC--CCEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc-CCCEEEc
Confidence 34455799999999999998 4999999976663221111 2456777777777765 5777764
No 75
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=94.05 E-value=0.12 Score=52.60 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=45.9
Q ss_pred EEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCC----CCCCCHHHHHHHHHhcCCcceEeeC
Q 023877 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG----KTVMTEDERYESLRHCKWVDEVIPD 92 (276)
Q Consensus 23 V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kg----rpi~s~eER~e~l~~~r~VD~Vi~~ 92 (276)
+-+.-+-=-+|-||+.++++|++.+ |.+||.|--++.--. .+ +.+-+.++=+++++.. .||.|+.+
T Consensus 22 ig~VPTMG~LH~GHlsLi~~A~~~~--d~vVvSIFVNP~QF~-~~eD~~~YPr~~~~D~~~l~~~-gvd~vf~P 91 (512)
T PRK13477 22 IGFVPTMGALHQGHLSLIRRARQEN--DVVLVSIFVNPLQFG-PNEDLERYPRTLEADRELCESA-GVDAIFAP 91 (512)
T ss_pred EEEECCCcchhHHHHHHHHHHHHhC--CEEEEEEccCcccCC-CchhhhhCCCCHHHHHHHHHhc-CCCEEECC
Confidence 4444566679999999999999995 899999965542111 11 2356777777777765 57777653
No 76
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=87.51 E-value=0.18 Score=50.04 Aligned_cols=49 Identities=20% Similarity=0.089 Sum_probs=41.3
Q ss_pred hhhhhhhhhhhhccccC--C-----CCCc------cccchh--hHHhhhhhcCcceeEEEEeeC
Q 023877 209 KVFALLCHSIKAFCTFP--F-----PFPV------FVFLDA--SWRAFDLSYGIQTRLLLVLKN 257 (276)
Q Consensus 209 ~~~~~~~~~id~~~~~~--~-----~~~~------~~f~gg--~~~~~~~~~g~~~~~~~~~~~ 257 (276)
++.+|||.++|.||++. | |.|. ..-+|| +||.-+.++||++.++-+.|.
T Consensus 12 kVLVvGDvmLDrY~~G~~~RISPEAPVPVv~v~~e~~rlGGAaNVa~NiasLGa~a~l~GvvG~ 75 (467)
T COG2870 12 KVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEKEEERLGGAANVAKNIASLGANAYLVGVVGK 75 (467)
T ss_pred cEEEEcceeeeeeccccccccCCCCCCceEEecccccccccHHHHHHHHHHcCCCEEEEEeecc
Confidence 78999999999999988 1 3332 456888 899999999999999999883
No 77
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=85.55 E-value=1.2 Score=42.12 Aligned_cols=65 Identities=23% Similarity=0.157 Sum_probs=42.0
Q ss_pred EEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCC----CCCCCHHHHHHHHHhcCCcceEee
Q 023877 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG----KTVMTEDERYESLRHCKWVDEVIP 91 (276)
Q Consensus 23 V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kg----rpi~s~eER~e~l~~~r~VD~Vi~ 91 (276)
|-+-=+---+|-||+.++++|++. +|.+||.|--++.--- .+ +.+-+.+.=.+.++.. .||.++.
T Consensus 24 Vg~VPTMG~LH~GHlsLVr~A~~~--~d~VVVSIFVNP~QFg-~~EDl~~YPR~l~~D~~~le~~-gvd~vF~ 92 (285)
T COG0414 24 VGLVPTMGNLHEGHLSLVRRAKKE--NDVVVVSIFVNPLQFG-PNEDLDRYPRTLERDLELLEKE-GVDIVFA 92 (285)
T ss_pred EEEEcCCcccchHHHHHHHHHhhc--CCeEEEEEEeChhhcC-CchhhhhCCCCHHHHHHHHHhc-CCcEEeC
Confidence 333346778999999999999988 6999999977764220 01 1244555444555443 5666654
No 78
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=81.27 E-value=0.84 Score=41.89 Aligned_cols=55 Identities=16% Similarity=0.021 Sum_probs=41.4
Q ss_pred hhhhhhhhhhhhccc--cCC--C-CC--------ccccchh--hHHhhhhhcCcceeEEEEeeCCccchh
Q 023877 209 KVFALLCHSIKAFCT--FPF--P-FP--------VFVFLDA--SWRAFDLSYGIQTRLLLVLKNGRLMSF 263 (276)
Q Consensus 209 ~~~~~~~~~id~~~~--~~~--~-~~--------~~~f~gg--~~~~~~~~~g~~~~~~~~~~~~~~~~~ 263 (276)
++..+|...+|.|.. .++ | .+ .+.++|| ++|..+..+|.++.+.+.+|+...-+|
T Consensus 9 ~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGa~NvA~~l~~lg~~v~~i~~vG~D~~g~~ 78 (315)
T TIGR02198 9 KVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEREEDRLGGAANVARNIASLGARVFLVGVVGDDEAGKR 78 (315)
T ss_pred cEEEECceeEeeeeeecccccCCCCCCceEEEEEEEecCcHHHHHHHHHHhcCCceEEEEEEecchhHHH
Confidence 788999999999976 332 2 11 1567888 778899999999999999996544333
No 79
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=77.45 E-value=3.7 Score=37.85 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=31.5
Q ss_pred CCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChh
Q 023877 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDET 61 (276)
Q Consensus 19 r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~ 61 (276)
+.++++++ +.-.+|-||+.+++|+++. +++.+|.|.-++.
T Consensus 23 g~tIgfVP-TMG~LHeGH~SLvrqs~~~--~~~tVVSIfVNP~ 62 (283)
T KOG3042|consen 23 GETIGFVP-TMGCLHEGHASLVRQSVKE--NTYTVVSIFVNPS 62 (283)
T ss_pred CCeEEEec-ccccccccHHHHHHHHHhh--CceEEEEEEechh
Confidence 44455544 5667999999999999999 6999999976653
No 80
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=76.02 E-value=1.1 Score=39.83 Aligned_cols=47 Identities=6% Similarity=0.084 Sum_probs=37.6
Q ss_pred hhhhhhhhhhhhccccCCCCCccccchh---hHHhhhhhcCcceeEEEEeeCCcc
Q 023877 209 KVFALLCHSIKAFCTFPFPFPVFVFLDA---SWRAFDLSYGIQTRLLLVLKNGRL 260 (276)
Q Consensus 209 ~~~~~~~~~id~~~~~~~~~~~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~~ 260 (276)
|+.++|+.++|.|.. +....+|| ++|..+..+|.++.+.+.+|+...
T Consensus 1 ~v~~iG~~~~D~~~~-----~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~ 50 (264)
T cd01940 1 RLAAIGDNVVDKYLH-----LGKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDA 50 (264)
T ss_pred CeEEEcceEEEEecc-----CceecCCCcHHHHHHHHHHcCCCeeEEecccCchh
Confidence 356789999999854 24667888 778889999999999999996543
No 81
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=69.86 E-value=2.2 Score=41.94 Aligned_cols=56 Identities=16% Similarity=0.032 Sum_probs=42.7
Q ss_pred hhhhhhhhhhhhhhccccC--C--C-CC--------ccccchh--hHHhhhhhcCcceeEEEEeeCCccch
Q 023877 207 GEKVFALLCHSIKAFCTFP--F--P-FP--------VFVFLDA--SWRAFDLSYGIQTRLLLVLKNGRLMS 262 (276)
Q Consensus 207 ~~~~~~~~~~~id~~~~~~--~--~-~~--------~~~f~gg--~~~~~~~~~g~~~~~~~~~~~~~~~~ 262 (276)
+.++.++|+..+|.|+.++ + | .| ....+|| ++|..+..+|+++.|.+.+|+...-+
T Consensus 10 ~~~ilviG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGa~NvA~~la~LG~~v~~i~~vG~D~~g~ 80 (473)
T PRK11316 10 RAGVLVVGDVMLDRYWYGPTSRISPEAPVPVVKVNQIEERPGGAANVAMNIASLGAQARLVGLTGIDEAAR 80 (473)
T ss_pred CCcEEEECccEEeeeeecccceeCCCCCCCEEEeeeEEecCcHHHHHHHHHHHcCCcEEEEEEEcCCHHHH
Confidence 3378899999999998863 1 2 22 3556788 77889999999999999999654333
No 82
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=65.93 E-value=4.3 Score=36.54 Aligned_cols=54 Identities=7% Similarity=-0.009 Sum_probs=40.7
Q ss_pred hhhhhhhhhhhccccCC-CCC--------ccccchh---hHHhhhhhcCcceeEEEEeeCCccchh
Q 023877 210 VFALLCHSIKAFCTFPF-PFP--------VFVFLDA---SWRAFDLSYGIQTRLLLVLKNGRLMSF 263 (276)
Q Consensus 210 ~~~~~~~~id~~~~~~~-~~~--------~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~~~~~ 263 (276)
+.++|...+|.+..++. |.+ ...++|| .+|..+..+|.++.|.+.+|+...-++
T Consensus 2 il~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~ 67 (292)
T cd01174 2 VVVVGSINVDLVTRVDRLPKPGETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDE 67 (292)
T ss_pred EEEEeeceeEEEEEecCCCCCCCcEEeccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHH
Confidence 45678889998887763 322 2567898 688899999999999999996544333
No 83
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=64.71 E-value=1.9 Score=42.98 Aligned_cols=29 Identities=3% Similarity=-0.120 Sum_probs=25.1
Q ss_pred CCeEEEEcccccCCChHHHHHHHHHhhhC
Q 023877 19 RPVRVYADGIYDLFHFGHARSLEQAKKSF 47 (276)
Q Consensus 19 r~~~V~~~G~FD~fH~GHl~~L~qAk~l~ 47 (276)
..+.++..|+||.+|.||+.+|.+|..-+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 413 NEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 34578999999999999999999988654
No 84
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=61.05 E-value=29 Score=31.44 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=50.5
Q ss_pred cceEeeCCCCcchHHHHhhcCCCEEEeCCCcccccC-CCCchHHHHHHhcCeEE-E--ccccCCCChHHHHHHHHHhhHH
Q 023877 86 VDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADAS-GAGKDVYEFVKAAGKFK-E--TKRTDGISTSDIIMRIVKDYNQ 161 (276)
Q Consensus 86 VD~Vi~~~p~~~t~e~L~~~~~D~vv~G~d~y~~~~-~~~~d~y~~lk~~G~~~-~--~~rt~giSTT~Ii~rI~~~y~~ 161 (276)
|-+++...|- +.+.+++++|||-+.|..+..... ..+-|.-..+.+..... . ..-....|.+.||.-|++.+..
T Consensus 8 vg~iv~~~p~--~~~vf~~~~idfCcgG~~~l~ea~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~LidyI~~~~H~ 85 (220)
T PRK10992 8 LGELALSIPR--ATALFREYDLDFCCGGKQTLARAAARKNLDIDVIEARLAALQEQPIEKDWRSAPLAELIDHIIVRYHD 85 (220)
T ss_pred HHHHHHhCcc--HHHHHHHcCCcccCCCCchHHHHHHHcCCCHHHHHHHHHHHHhccccCChhhCCHHHHHHHHHHHHhH
Confidence 3344555564 467999999999999987665432 12223233333222111 1 1112357889999999999999
Q ss_pred HHHHHhhc
Q 023877 162 YVMRNLDR 169 (276)
Q Consensus 162 y~~Rnl~r 169 (276)
|+++++..
T Consensus 86 ~~r~~lp~ 93 (220)
T PRK10992 86 RHREQLPE 93 (220)
T ss_pred HHHHHHHH
Confidence 99876644
No 85
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=59.93 E-value=3.8 Score=36.85 Aligned_cols=51 Identities=12% Similarity=-0.094 Sum_probs=41.6
Q ss_pred hhhhhhhhhhhhccccCC-------CCCccccchh---hHHhhhhhcCcceeEEEEeeCCc
Q 023877 209 KVFALLCHSIKAFCTFPF-------PFPVFVFLDA---SWRAFDLSYGIQTRLLLVLKNGR 259 (276)
Q Consensus 209 ~~~~~~~~~id~~~~~~~-------~~~~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~ 259 (276)
++.++|...+|.+..++. +.....++|| ++|..+..+|.++.+.+.+|+-.
T Consensus 3 ~v~~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~ 63 (301)
T PF00294_consen 3 KVLVIGEVNIDIIGYVDRFKGDLVRVSSVKRSPGGAGANVAIALARLGADVALIGKVGDDF 63 (301)
T ss_dssp EEEEESEEEEEEEEESSSHTTSEEEESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSH
T ss_pred cEEEECccceEEEeecCCcCCcceecceEEEecCcHHHHHHHHHHhccCcceEEeeccCcc
Confidence 355778888898888875 4566788999 78889999999999999999543
No 86
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=58.96 E-value=36 Score=28.34 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=37.6
Q ss_pred hHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcC-eEEEccccCCCChHHHHHHHHH
Q 023877 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIMRIVK 157 (276)
Q Consensus 98 t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~rt~giSTT~Ii~rI~~ 157 (276)
.+++|..+++|+++.+. .+..-|..|++.| +++..++ -+.++.++....
T Consensus 57 ~a~~l~~~gvdvvi~~~--------iG~~a~~~l~~~GIkv~~~~~---~~V~e~i~~~~~ 106 (121)
T COG1433 57 IAELLVDEGVDVVIASN--------IGPNAYNALKAAGIKVYVAPG---GTVEEAIKAFLE 106 (121)
T ss_pred HHHHHHHcCCCEEEECc--------cCHHHHHHHHHcCcEEEecCC---CCHHHHHHHHhc
Confidence 47999999999999886 3456799999999 7777665 567777666543
No 87
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=57.80 E-value=44 Score=24.90 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=35.8
Q ss_pred hHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcC-eEEEccccCCCChHHHHHHHH
Q 023877 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIMRIV 156 (276)
Q Consensus 98 t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~rt~giSTT~Ii~rI~ 156 (276)
..++|...++|+++.|. .+...+..+++.| +++.. .+-+.+++++.++
T Consensus 45 ~~~~l~~~~v~~li~~~--------iG~~~~~~L~~~gI~v~~~---~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICGG--------IGEGAFRALKEAGIKVYQG---AGGDIEEALEAYL 93 (94)
T ss_dssp HHHHHHHTTESEEEESC--------SCHHHHHHHHHTTSEEEES---TSSBHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeC--------CCHHHHHHHHHCCCEEEEc---CCCCHHHHHHHHh
Confidence 46788889999999987 3456688899998 66664 4567777777654
No 88
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=56.50 E-value=7 Score=34.93 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=35.9
Q ss_pred hhhhhhhhhhhccccCCCCCccccchh---hHHhhhhhcCcceeEEEEeeCCc
Q 023877 210 VFALLCHSIKAFCTFPFPFPVFVFLDA---SWRAFDLSYGIQTRLLLVLKNGR 259 (276)
Q Consensus 210 ~~~~~~~~id~~~~~~~~~~~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~ 259 (276)
+-.+|+..+|.|... .+.++|| .+|..+..+|.++.+.+.+|+.-
T Consensus 3 v~~iG~~~~D~~~~~-----~~~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~ 50 (260)
T PRK09813 3 LATIGDNCVDIYPQL-----GKAFSGGNAVNVAVYCTRYGIQPGCITWVGDDD 50 (260)
T ss_pred EEEeccceeeecccC-----CccccCccHHHHHHHHHHcCCcceEEEEecCcH
Confidence 456788999988543 2468888 77889999999999999998543
No 89
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=56.17 E-value=7.2 Score=34.99 Aligned_cols=50 Identities=12% Similarity=-0.014 Sum_probs=37.1
Q ss_pred hhhhhhhhhhccccCC-CCC-------ccccchh---hHHhhhhhcCcceeEEEEeeCCcc
Q 023877 211 FALLCHSIKAFCTFPF-PFP-------VFVFLDA---SWRAFDLSYGIQTRLLLVLKNGRL 260 (276)
Q Consensus 211 ~~~~~~~id~~~~~~~-~~~-------~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~~ 260 (276)
.++|.-.+|.+..++. |.+ ....+|| ++|.++..+|.++.+.+.+|....
T Consensus 3 ~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~ 63 (288)
T cd01941 3 VVIGAANIDLRGKVSGSLVPGTSNPGHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSE 63 (288)
T ss_pred EEEEeEEEeeeecccCccccCCCCCeeEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCcc
Confidence 4567778888777764 332 2445777 788899999999999999995543
No 90
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=55.59 E-value=22 Score=31.75 Aligned_cols=72 Identities=22% Similarity=0.324 Sum_probs=42.9
Q ss_pred hHHHHhhcCCCEEEeCCCcccccC-CCCchHHHHHHhcCeEEE-c-----cccCCCChHHHHHHHHHhhHHHHHHHhhc
Q 023877 98 TQEFLDKHQIDFVAHDSLPYADAS-GAGKDVYEFVKAAGKFKE-T-----KRTDGISTSDIIMRIVKDYNQYVMRNLDR 169 (276)
Q Consensus 98 t~e~L~~~~~D~vv~G~d~y~~~~-~~~~d~y~~lk~~G~~~~-~-----~rt~giSTT~Ii~rI~~~y~~y~~Rnl~r 169 (276)
+.+.+.++++|+-+.|..+..... ..+-|.-+.+++...... . .-....|+.+||..|++.+..|+++.+..
T Consensus 11 ~~~vf~~~gid~cc~g~~~l~~a~~~~g~d~~~~l~~ln~~~~~~~~~~~~~~~~~~~~~Lid~i~~~hH~~i~~~l~~ 89 (216)
T TIGR03652 11 AARIFRKYGIDFCCGGNVSLAEACKEKGLDPDEILAELNALQQEPENSGAKDWREAPLSELIDHIVDRHHEYLREELPE 89 (216)
T ss_pred HHHHHHHcCCCccCCCcchHHHHHHHcCCCHHHHHHHHHHHHhccccccccChhhCCHHHHHHHHHHHHhHHHHHHHHH
Confidence 467899999994444433332211 123344444444432221 1 11235799999999999999999887753
No 91
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=50.88 E-value=10 Score=33.98 Aligned_cols=53 Identities=13% Similarity=0.022 Sum_probs=38.5
Q ss_pred hhhhhhhhhhccccCC-CCC--------ccccchh---hHHhhhhhcCcceeEEEEeeCCccchh
Q 023877 211 FALLCHSIKAFCTFPF-PFP--------VFVFLDA---SWRAFDLSYGIQTRLLLVLKNGRLMSF 263 (276)
Q Consensus 211 ~~~~~~~id~~~~~~~-~~~--------~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~~~~~ 263 (276)
-.+|.-.+|....++. |.+ ....+|| .+|.++..+|.++.+.+.+|....-++
T Consensus 3 ~~iG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~ 67 (284)
T cd01945 3 LGVGLAVLDLIYLVASFPGGDGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRL 67 (284)
T ss_pred EEECcceeEEEEEeccCCCCCCeEEEeEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHH
Confidence 3567777888777763 432 2467888 778899999999999999986543333
No 92
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=50.81 E-value=9.8 Score=34.62 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=46.3
Q ss_pred hHHHHhhcCCCEEEeCCCcccccC-CCCchHHHHHHhcCeEEEcc----ccCCCChHHHHHHHHHhhHHHHHHHhhc
Q 023877 98 TQEFLDKHQIDFVAHDSLPYADAS-GAGKDVYEFVKAAGKFKETK----RTDGISTSDIIMRIVKDYNQYVMRNLDR 169 (276)
Q Consensus 98 t~e~L~~~~~D~vv~G~d~y~~~~-~~~~d~y~~lk~~G~~~~~~----rt~giSTT~Ii~rI~~~y~~y~~Rnl~r 169 (276)
..+.++++++||-+-|.-...... ..+-+.-+..+++..+...+ .....+.|+||.-|+..|.++.+.+|..
T Consensus 18 A~~iFr~y~iDFCCGG~~~L~~Aa~~k~l~~~~i~a~L~~l~~~~~~~~dw~~~~~s~lIdhIi~ryH~~hReqlpe 94 (221)
T COG2846 18 AAEIFRSYDIDFCCGGKVTLERAAAEKGLDIDEIEARLNALQQEPTPSKDWATAPLSELIDHIIVRYHERHREQLPE 94 (221)
T ss_pred HHHHHHHcCCceecCChHHHHHHHHHcCCCHHHHHHHHHHHHhccCcccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999776653222111 12334444444544333332 4557899999999999999888776653
No 93
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=50.52 E-value=58 Score=29.59 Aligned_cols=86 Identities=13% Similarity=0.031 Sum_probs=48.2
Q ss_pred EEEcccccCCChHHHHHHHHHhhhCCCCeEEEEE-cCChhhhccCCCCCCCHHHHHHHHHhc-CC---cceEee-CCCCc
Q 023877 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGC-CNDETTHKFKGKTVMTEDERYESLRHC-KW---VDEVIP-DAPWV 96 (276)
Q Consensus 23 V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV-~sD~~~~~~Kgrpi~s~eER~e~l~~~-r~---VD~Vi~-~~p~~ 96 (276)
|+..=+-||+|.+|..+++.|.+.. +|.|+|-- -.. .| .--++.+-|++..+.+ +. -+.|++ .-|+.
T Consensus 23 VvafqtrnPlHraHe~l~~~a~e~~-~~~lll~plvG~-----~k-~~d~~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~ 95 (215)
T PF01747_consen 23 VVAFQTRNPLHRAHEYLMRRALEKA-GDGLLLHPLVGP-----TK-PGDIPYEVRVRCYEALIDNYFPKNRVLLSPLPLP 95 (215)
T ss_dssp EEEEEESS---HHHHHHHHHHHHHH-TSEEEEEEBESB------S-TTSCCHHHHHHHHHHHHHHCSSTTGEEEEBBESB
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh-cCcEEEEeccCC-----CC-cCCCCHHHHHHHHHHHHHHhCCCCcEEEeccCch
Confidence 4444459999999999999999986 45554432 221 12 2368999999988864 22 245543 12221
Q ss_pred -----chHH----HH-hhcCCCEEEeCCC
Q 023877 97 -----VTQE----FL-DKHQIDFVAHDSL 115 (276)
Q Consensus 97 -----~t~e----~L-~~~~~D~vv~G~d 115 (276)
.... .+ +.+++..++.|-|
T Consensus 96 mr~aGPrEallhAiirkN~GcTh~IvGrd 124 (215)
T PF01747_consen 96 MRYAGPREALLHAIIRKNYGCTHFIVGRD 124 (215)
T ss_dssp ---SHHHHHHHHHHHHHHTT-SEEEE-TT
T ss_pred hcccCcHHHHHHHHHHHHCCCceEEeCCc
Confidence 1112 22 3358999999874
No 94
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=50.12 E-value=53 Score=32.06 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=56.1
Q ss_pred eEEEEcccccCCChHHHHHHHHHhhhCCCCeEEE-EEcCChhhhccCCCCCCCHHHHHHHHHhc--CCc--ceEee-CCC
Q 023877 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLV-GCCNDETTHKFKGKTVMTEDERYESLRHC--KWV--DEVIP-DAP 94 (276)
Q Consensus 21 ~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIV-GV~sD~~~~~~Kgrpi~s~eER~e~l~~~--r~V--D~Vi~-~~p 94 (276)
++|+..=+-+|+|.+|..+++.|.+..+++-|+| -+..- .| .--++.+-|++..+++ .+. |.+++ .-|
T Consensus 157 ~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~plvG~-----~k-~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp 230 (353)
T cd00517 157 RRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPLVGW-----TK-PGDVPDEVRMRAYEALLEEYYLPERTVLAILP 230 (353)
T ss_pred CeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEeccCC-----CC-CCCCCHHHHHHHHHHHHHhCCCCCcEEEEecc
Confidence 4677788999999999999999999863233333 32221 12 2368999999988875 233 55543 222
Q ss_pred C-----cchHH----HH-hhcCCCEEEeCCC
Q 023877 95 W-----VVTQE----FL-DKHQIDFVAHDSL 115 (276)
Q Consensus 95 ~-----~~t~e----~L-~~~~~D~vv~G~d 115 (276)
+ +.... .+ +.++++.++.|-|
T Consensus 231 ~~mryAGPrEallhAiirkN~GcThfIvGrD 261 (353)
T cd00517 231 LPMRYAGPREALWHAIIRKNYGATHFIVGRD 261 (353)
T ss_pred chhcccCcHHHHHHHHHHHhCCCCeEEECCC
Confidence 2 12222 22 3358999998854
No 95
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=49.97 E-value=2.3e+02 Score=26.78 Aligned_cols=161 Identities=15% Similarity=0.136 Sum_probs=87.1
Q ss_pred EEEcccccCCChHH-----HHHHHHHhhhC--CCCeEEEEEcCChhhhccCCC-CCCCHHHHHH---HHHhcCC-cceEe
Q 023877 23 VYADGIYDLFHFGH-----ARSLEQAKKSF--PNTYLLVGCCNDETTHKFKGK-TVMTEDERYE---SLRHCKW-VDEVI 90 (276)
Q Consensus 23 V~~~G~FD~fH~GH-----l~~L~qAk~l~--~~d~LIVGV~sD~~~~~~Kgr-pi~s~eER~e---~l~~~r~-VD~Vi 90 (276)
+++.=|=|-|.-|- -..+++|.++. +.|.+=||-.|-. .|- ++-.++|..+ .|+.++. .+-.+
T Consensus 19 GIlNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTr-----Pg~~~v~~eeE~~Rv~pvI~~l~~~~~~~I 93 (282)
T PRK11613 19 GILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTR-----PGAAEVSVEEELDRVIPVVEAIAQRFEVWI 93 (282)
T ss_pred EEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCC-----CCCCCCCHHHHHHHHHHHHHHHHhcCCCeE
Confidence 55555556665553 46777777763 3576666654431 232 4555566444 4445542 23333
Q ss_pred e-CCCCcchHHHHhhcCCCEE--EeCCCcccccCCCCchHHHHHHhcC-eEEEcc-----ccC--CCChHHHHHHHHHhh
Q 023877 91 P-DAPWVVTQEFLDKHQIDFV--AHDSLPYADASGAGKDVYEFVKAAG-KFKETK-----RTD--GISTSDIIMRIVKDY 159 (276)
Q Consensus 91 ~-~~p~~~t~e~L~~~~~D~v--v~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~-----rt~--giSTT~Ii~rI~~~y 159 (276)
- +.......+..-+.+.|++ +.|. ...+.++.++++| .++... .+. .....+++..+.+-.
T Consensus 94 SIDT~~~~va~~AL~~GadiINDI~g~--------~d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l 165 (282)
T PRK11613 94 SVDTSKPEVIRESAKAGAHIINDIRSL--------SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYF 165 (282)
T ss_pred EEECCCHHHHHHHHHcCCCEEEECCCC--------CCHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHH
Confidence 2 3222222333334577764 1221 1123466777875 444432 121 122357888888887
Q ss_pred HHHHHHHhhcCCCcc----cccchhhhhh--HHHHHHHHHHHH
Q 023877 160 NQYVMRNLDRGYSRK----DLGVSYVKEK--RLRVNMKLKKLQ 196 (276)
Q Consensus 160 ~~y~~Rnl~rg~~~~----~l~~~~~~~~--~~~~~~~~~~~~ 196 (276)
.+-++.-++.|+++. |-++||-|.. .+++-+.++.|+
T Consensus 166 ~~~i~~a~~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~~l~ 208 (282)
T PRK11613 166 IEQIARCEAAGIAKEKLLLDPGFGFGKNLSHNYQLLARLAEFH 208 (282)
T ss_pred HHHHHHHHHcCCChhhEEEeCCCCcCCCHHHHHHHHHHHHHHH
Confidence 888888888999843 4578886643 555555555554
No 96
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=49.60 E-value=13 Score=33.06 Aligned_cols=53 Identities=6% Similarity=-0.103 Sum_probs=39.3
Q ss_pred hhhhhhhhhhccccCC-CC--------Cccccchh---hHHhhhhhcCcceeEEEEeeCCccchh
Q 023877 211 FALLCHSIKAFCTFPF-PF--------PVFVFLDA---SWRAFDLSYGIQTRLLLVLKNGRLMSF 263 (276)
Q Consensus 211 ~~~~~~~id~~~~~~~-~~--------~~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~~~~~ 263 (276)
.++|...+|.+..++. |. .....+|| .+|..+..+|.++.|.+.+|....-++
T Consensus 3 ~~iG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~ 67 (279)
T cd01942 3 AVVGHLNYDIILKVESFPGPFESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRL 67 (279)
T ss_pred EEEecceeeeEeecccCCCCCceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHH
Confidence 4578888898877663 42 24577888 777889999999999999996544333
No 97
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=48.85 E-value=49 Score=25.58 Aligned_cols=14 Identities=50% Similarity=0.731 Sum_probs=11.5
Q ss_pred hhhHHHHHHhhhcC
Q 023877 263 FGATFMLLLLILRR 276 (276)
Q Consensus 263 ~~~~~~~~~~~~~~ 276 (276)
+++||.||+|+-||
T Consensus 81 agvG~llG~Ll~RR 94 (94)
T PF05957_consen 81 AGVGFLLGLLLRRR 94 (94)
T ss_pred HHHHHHHHHHHhCC
Confidence 57889999988876
No 98
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=48.81 E-value=2.2e+02 Score=26.25 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=79.6
Q ss_pred HHHHHHHhhhC--CCCeEEEEEcCChhhhccCC-CCCCCHHHHHHH---HHhcCCc-ceEe-eCCCCcchHHHHhhcCCC
Q 023877 37 ARSLEQAKKSF--PNTYLLVGCCNDETTHKFKG-KTVMTEDERYES---LRHCKWV-DEVI-PDAPWVVTQEFLDKHQID 108 (276)
Q Consensus 37 l~~L~qAk~l~--~~d~LIVGV~sD~~~~~~Kg-rpi~s~eER~e~---l~~~r~V-D~Vi-~~~p~~~t~e~L~~~~~D 108 (276)
-..+++|.++. +.|.+=||..|.. .| .++-.++|..++ |+.++.. |-.+ ++.+..-..+..-++++|
T Consensus 24 ~~~~~~a~~~~~~GAdiIDIG~~st~-----p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 24 DKAVAHAEKMIAEGADIIDIGGESTR-----PGADPVSVEEELERVIPVLEALRGELDVLISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCC-----CCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHHHHhCCC
Confidence 35666666652 3677778765431 12 245555665443 4555433 4333 344433233333345777
Q ss_pred EEEeCCCcccccCCCCchHHHHHHhcC-eEEEccccCCCC--------hHHHHHHHHHhhHHHHHHHhhcCCCcc----c
Q 023877 109 FVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGIS--------TSDIIMRIVKDYNQYVMRNLDRGYSRK----D 175 (276)
Q Consensus 109 ~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~rt~giS--------TT~Ii~rI~~~y~~y~~Rnl~rg~~~~----~ 175 (276)
++= +- .... ..+..++.++++| .++..+. .|+. ..+++..+.+-..+.+++-.+.|+++. |
T Consensus 99 iIN-di-sg~~---~~~~~~~l~~~~~~~vV~m~~-~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~D 172 (257)
T cd00739 99 IIN-DV-SGGS---DDPAMLEVAAEYGAPLVLMHM-RGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILD 172 (257)
T ss_pred EEE-eC-CCCC---CChHHHHHHHHcCCCEEEECC-CCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 652 11 1110 1135677788886 5555432 1221 245666666667777777888999844 4
Q ss_pred ccchhhhh--hHHHHHHHHHHHHH
Q 023877 176 LGVSYVKE--KRLRVNMKLKKLQE 197 (276)
Q Consensus 176 l~~~~~~~--~~~~~~~~~~~~~~ 197 (276)
-++||.+. ..+.+-+.+..+++
T Consensus 173 Pg~gf~ks~~~~~~~l~~i~~l~~ 196 (257)
T cd00739 173 PGIGFGKTPEHNLELLRRLDELKQ 196 (257)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHh
Confidence 46788765 34444444544444
No 99
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=48.60 E-value=13 Score=33.25 Aligned_cols=51 Identities=8% Similarity=-0.092 Sum_probs=37.9
Q ss_pred hhhhhhhhhhhccccC----CCCCccccchh---hHHhhhhhcCcceeEEEEeeCCcc
Q 023877 210 VFALLCHSIKAFCTFP----FPFPVFVFLDA---SWRAFDLSYGIQTRLLLVLKNGRL 260 (276)
Q Consensus 210 ~~~~~~~~id~~~~~~----~~~~~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~~ 260 (276)
+.++|+..+|.+...+ .+......+|| .+|..+..+|.++.+.+.+|....
T Consensus 2 i~~iG~~~iD~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~ 59 (294)
T cd01166 2 VVTIGEVMVDLSPPGGGRLEQADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPF 59 (294)
T ss_pred eEEechhheeeecCCCCccchhhccccccCChHHHHHHHHHhcCCceEEEEecCCCHH
Confidence 4567888888876644 23445667888 677788899999999999996543
No 100
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=48.28 E-value=1.8e+02 Score=28.24 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=58.6
Q ss_pred CchHHHHHHhcCeEEEcc---------c--cCCCChHHHHHHHHHhhHHHHHHHhhcCCCcccccchhhhhhHHHHHHHH
Q 023877 124 GKDVYEFVKAAGKFKETK---------R--TDGISTSDIIMRIVKDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMKL 192 (276)
Q Consensus 124 ~~d~y~~lk~~G~~~~~~---------r--t~giSTT~Ii~rI~~~y~~y~~Rnl~rg~~~~~l~~~~~~~~~~~~~~~~ 192 (276)
.++....++++|+-.+.. | .+--||++|.+-|.+.+..+..+ ++..|.. -.+.+=+|.+++.+
T Consensus 147 e~~L~~I~~~yGEEr~arrIA~aIv~~R~~~pi~tT~eLaeiI~~~~p~~~~~---k~~hPAt---r~FQAiRI~VNdEL 220 (314)
T COG0275 147 EEDLARIFKEYGEERFAKRIARAIVERRKKKPIETTKELAEIIKSAIPAKEKR---KKIHPAT---RTFQAIRIYVNDEL 220 (314)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHhccCCCccHHHHHHHHHHhCCchhcc---cCCCcch---hhhhhheeeehhHH
Confidence 345566677777554432 2 23446677766665555444333 4344433 24556667788899
Q ss_pred HHHHHHHHHHHHHh--hhhh-----hhhhhhhhhhccc
Q 023877 193 KKLQEKVKQQQERV--GEKV-----FALLCHSIKAFCT 223 (276)
Q Consensus 193 ~~~~~~~~~~~~~~--~~~~-----~~~~~~~id~~~~ 223 (276)
.+|++-+....+-. +.|+ |-++|.|+..|..
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLEDRiVK~ff~ 258 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHSLEDRIVKNFFK 258 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecchHHHHHHHHHH
Confidence 99999888877754 6666 4568888888865
No 101
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=46.37 E-value=60 Score=32.24 Aligned_cols=88 Identities=16% Similarity=0.061 Sum_probs=55.4
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhc-C--C-cceEee-CCC
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC-K--W-VDEVIP-DAP 94 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~-r--~-VD~Vi~-~~p 94 (276)
=++|...=++||.|.||-.+.+.|....++ -|+--|-.. .| .-=++.+-|++..+++ + + =|.+++ .-|
T Consensus 183 wk~vvafQTRNp~HraHEyl~K~Al~~vdg-llv~plVG~-----tk-~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~ 255 (397)
T COG2046 183 WKTVVAFQTRNPPHRAHEYLQKRALEKVDG-LLVHPLVGA-----TK-PGDIPDEVRMEYYEALLKHYYPPDRVFLSVLP 255 (397)
T ss_pred CeEEEEEecCCCchHHHHHHHHHHHHhcCc-EEEEeeecc-----cc-CCCchHHHHHHHHHHHHHhCCCCCcEEEEecH
Confidence 357899999999999999999999998744 232222221 12 2357888898877764 2 2 366654 223
Q ss_pred Cc---------chHHHHhh-cCCCEEEeCC
Q 023877 95 WV---------VTQEFLDK-HQIDFVAHDS 114 (276)
Q Consensus 95 ~~---------~t~e~L~~-~~~D~vv~G~ 114 (276)
|. +.-..+++ +++.-++.|-
T Consensus 256 ~aMRyagPrEa~~HaIIRkNyGcTHfIVGR 285 (397)
T COG2046 256 AAMRYAGPREALLHAIIRKNYGCTHFIVGR 285 (397)
T ss_pred HHhhhcCcHHHHHHHHHHhhcCCeeeeecC
Confidence 32 11234444 4788788775
No 102
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=45.33 E-value=78 Score=30.79 Aligned_cols=86 Identities=20% Similarity=0.133 Sum_probs=54.3
Q ss_pred CCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhh-------------hccCCCCCCCHHHHHHHHHhcCC
Q 023877 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETT-------------HKFKGKTVMTEDERYESLRHCKW 85 (276)
Q Consensus 19 r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~-------------~~~Kgrpi~s~eER~e~l~~~r~ 85 (276)
+|.+|+..|-|= .+-.|.-.+ -..++||++--..+ ++..|...+|. ||-.++.+ .
T Consensus 93 ~p~~v~~~Gg~v--------~~~aA~~~~-~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~-e~n~l~~~--~ 160 (396)
T TIGR03492 93 KGDLIVAVGDIV--------PLLFAWLSG-KPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPW-ERWLMRSR--R 160 (396)
T ss_pred cCCEEEEECcHH--------HHHHHHHcC-CCceEEEeeccceeecCCCCCccchhhhccCCCccCHH-HHHHhhch--h
Confidence 455666666443 444454443 56788888733332 33366666666 66666544 4
Q ss_pred cceEeeCCCCcchHHHHhhcCCCEEEeCCCcccc
Q 023877 86 VDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYAD 119 (276)
Q Consensus 86 VD~Vi~~~p~~~t~e~L~~~~~D~vv~G~d~y~~ 119 (276)
+|.|.. ++..+.+++.++++.+.+.|. |..+
T Consensus 161 a~~v~~--~~~~t~~~l~~~g~k~~~vGn-Pv~d 191 (396)
T TIGR03492 161 CLAVFV--RDRLTARDLRRQGVRASYLGN-PMMD 191 (396)
T ss_pred hCEEeC--CCHHHHHHHHHCCCeEEEeCc-CHHh
Confidence 677777 444578999998899999997 5554
No 103
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=44.32 E-value=15 Score=32.95 Aligned_cols=50 Identities=8% Similarity=-0.147 Sum_probs=37.0
Q ss_pred hhhhhhhhhhhccccCC-CCCccccchh---hHHhhhhhcCcceeEEEEeeCCc
Q 023877 210 VFALLCHSIKAFCTFPF-PFPVFVFLDA---SWRAFDLSYGIQTRLLLVLKNGR 259 (276)
Q Consensus 210 ~~~~~~~~id~~~~~~~-~~~~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~ 259 (276)
+.++|...+|.+...+. +......+|| .+|..+..+|.++.+.+.+|+..
T Consensus 2 ilviG~~~~D~~~~~~~~~~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~ 55 (295)
T cd01167 2 VVCFGEALIDFIPEGSGAPETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDE 55 (295)
T ss_pred EEEEcceeEEEecCCCCCCccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcH
Confidence 45678888888765432 1334678998 57778899999999999999543
No 104
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=44.26 E-value=2.5e+02 Score=28.23 Aligned_cols=131 Identities=11% Similarity=0.054 Sum_probs=73.0
Q ss_pred EcccccCCChHHHHHHHHHhhhCCCCeEEEEEcC-ChhhhccCCCCCCCHHHHHHHHHhcCCc-----ceEeeCCCCc--
Q 023877 25 ADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCN-DETTHKFKGKTVMTEDERYESLRHCKWV-----DEVIPDAPWV-- 96 (276)
Q Consensus 25 ~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~s-D~~~~~~Kgrpi~s~eER~e~l~~~r~V-----D~Vi~~~p~~-- 96 (276)
+....|.+.. .-++|+..++.+ ...+.+|+-| |+.+.+.-++. .+.++-.+.++.|+.. =..+.+-|..
T Consensus 276 ~~~r~~~i~~-d~ell~~l~~aG-~~~v~iGiES~~~~~L~~~~K~-~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~ 352 (497)
T TIGR02026 276 INTRVTDIVR-DADILHLYRRAG-LVHISLGTEAAAQATLDHFRKG-TTTSTNKEAIRLLRQHNILSEAQFITGFENETD 352 (497)
T ss_pred EecccccccC-CHHHHHHHHHhC-CcEEEEccccCCHHHHHHhcCC-CCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCH
Confidence 4444555422 345666666654 5789999953 33333222233 3566666666654321 1223344432
Q ss_pred ----chHHHHhhcCCCEEEeC-CCcccccCCCCchHHHHHHhcCeEEE---------ccccCCCChHHHHHHHHHhhHHH
Q 023877 97 ----VTQEFLDKHQIDFVAHD-SLPYADASGAGKDVYEFVKAAGKFKE---------TKRTDGISTSDIIMRIVKDYNQY 162 (276)
Q Consensus 97 ----~t~e~L~~~~~D~vv~G-~d~y~~~~~~~~d~y~~lk~~G~~~~---------~~rt~giSTT~Ii~rI~~~y~~y 162 (276)
-+.+++.+++||.+... -.|+ .+.+.|+.+++.|.+.. +-.+.++|..+|.+.+.+.|..+
T Consensus 353 e~~~~t~~~~~~l~~~~~~~~~~tP~-----PGT~l~~~~~~~~~~~d~~~y~~~~~~~~~~~m~~~El~~~~~~~~~~f 427 (497)
T TIGR02026 353 ETFEETYRQLLDWDPDQANWLMYTPW-----PFTSLFGELSDRVEVQDYTKYNFVTPIMKPTHMPRWEILLGVKLNYIRF 427 (497)
T ss_pred HHHHHHHHHHHHcCCCceEEEEecCC-----CCcHHHHHHHhhcccCchhhccccceEeeCCCCCHHHHHHHHHHHHHHH
Confidence 35678888899876543 2233 24467877776654311 11246788888888888777644
Q ss_pred H
Q 023877 163 V 163 (276)
Q Consensus 163 ~ 163 (276)
-
T Consensus 428 y 428 (497)
T TIGR02026 428 Y 428 (497)
T ss_pred H
Confidence 3
No 105
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=42.53 E-value=15 Score=33.28 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=39.9
Q ss_pred hhhhhhhhhhccccCC-CCCc--------cccchh---hHHhhhhhcCcceeEEEEeeCCccchhhh
Q 023877 211 FALLCHSIKAFCTFPF-PFPV--------FVFLDA---SWRAFDLSYGIQTRLLLVLKNGRLMSFGA 265 (276)
Q Consensus 211 ~~~~~~~id~~~~~~~-~~~~--------~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 265 (276)
-++|...+|-+...+. |.+. ..++|| .+|..+..+|.++.+.+.+|++-.-++.-
T Consensus 3 ~~iG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~ 69 (290)
T cd01939 3 LCVGLTVLDFITTVDKYPFEDSDQRTTNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLL 69 (290)
T ss_pred EEEeeeeeEEEeeecCCCCCCcceEeeeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHH
Confidence 3567777887766663 4321 467888 77888899999999999999776555543
No 106
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=39.55 E-value=21 Score=36.35 Aligned_cols=31 Identities=29% Similarity=0.591 Sum_probs=23.5
Q ss_pred CCCCeEEEEcc--cccCCChHHHHH------HHHHhhhC
Q 023877 17 SDRPVRVYADG--IYDLFHFGHARS------LEQAKKSF 47 (276)
Q Consensus 17 ~~r~~~V~~~G--~FD~fH~GHl~~------L~qAk~l~ 47 (276)
.++.+..|+.| ++|+.|+||++- |.+..+..
T Consensus 20 ~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~ 58 (490)
T PRK14536 20 EHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFL 58 (490)
T ss_pred CCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhc
Confidence 34567888888 799999999864 56666665
No 107
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=39.11 E-value=52 Score=32.48 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=21.3
Q ss_pred CCeEEEEcc--cccCCChHHHH------HHHHHhhhC
Q 023877 19 RPVRVYADG--IYDLFHFGHAR------SLEQAKKSF 47 (276)
Q Consensus 19 r~~~V~~~G--~FD~fH~GHl~------~L~qAk~l~ 47 (276)
+...+|+.| +||+.|+||++ +|.+..+..
T Consensus 8 ~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~ 44 (384)
T PRK12418 8 GTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDA 44 (384)
T ss_pred CeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHc
Confidence 356677777 79999999986 456666665
No 108
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=37.98 E-value=23 Score=32.09 Aligned_cols=54 Identities=15% Similarity=0.026 Sum_probs=38.1
Q ss_pred hhhhhhhhhhhccccC--C-----CC------Cccccchh--hHHhhhhhcCcceeEEEEeeCCccchh
Q 023877 210 VFALLCHSIKAFCTFP--F-----PF------PVFVFLDA--SWRAFDLSYGIQTRLLLVLKNGRLMSF 263 (276)
Q Consensus 210 ~~~~~~~~id~~~~~~--~-----~~------~~~~f~gg--~~~~~~~~~g~~~~~~~~~~~~~~~~~ 263 (276)
+-++|+..+|-|...+ + |. ....++|| ++|..+..+|.++.+.+.+|+...-++
T Consensus 2 vl~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~NvA~~la~LG~~~~~i~~vG~D~~g~~ 70 (304)
T cd01172 2 VLVVGDVILDEYLYGDVERISPEAPVPVVKVEREEIRLGGAANVANNLASLGAKVTLLGVVGDDEAGDL 70 (304)
T ss_pred EEEEcceeEEeeEeeccccccCCCCcceEEeeeEEecCcHHHHHHHHHHHhCCCeEEEEEEcCCccHHH
Confidence 4567888999987542 1 11 11447888 777888999999999999996544343
No 109
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=37.55 E-value=1.2e+02 Score=22.95 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=31.4
Q ss_pred hHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcC-eEEEccccCCCChHHHHH
Q 023877 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIM 153 (276)
Q Consensus 98 t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~rt~giSTT~Ii~ 153 (276)
..++|..+++|+++.+.. +...+..+++.| +++..+. -+..++++
T Consensus 55 ~~~~l~~~~v~~vi~~~i--------G~~~~~~l~~~gI~v~~~~~---~~i~~vl~ 100 (103)
T cd00851 55 AAEFLADEGVDVVIVGGI--------GPRALNKLRNAGIKVYKGAE---GTVEEAIE 100 (103)
T ss_pred HHHHHHHcCCCEEEeCCC--------CcCHHHHHHHCCCEEEEcCC---CCHHHHHH
Confidence 467888899999998862 345688899988 6666543 35555544
No 110
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.53 E-value=35 Score=33.95 Aligned_cols=135 Identities=19% Similarity=0.270 Sum_probs=68.3
Q ss_pred CeEEEEc--ccccCCChHHHHHHHHHhhhCC-CCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHh--cCCcceEeeCCC
Q 023877 20 PVRVYAD--GIYDLFHFGHARSLEQAKKSFP-NTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH--CKWVDEVIPDAP 94 (276)
Q Consensus 20 ~~~V~~~--G~FD~fH~GHl~~L~qAk~l~~-~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~--~r~VD~Vi~~~p 94 (276)
|.++|++ =+=+-+|.||+=.+...+.+-. |-.+||-|.. - +..=|.|....++|..+-+. ..++.
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~~ivLigd-~--ta~IgDpsGk~e~r~~l~~e~v~~n~~------- 101 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGD-A--TAMIGDPSGKSEERKLLTRETVLENAE------- 101 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCeEEEEecc-c--ceecCCCCCCHHHHhhccHHHHHHHHH-------
Confidence 4455553 3445699999988777776532 2445555542 2 12234455666666544321 00110
Q ss_pred CcchHHHHhhc-----CCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEc-------------cccCCCChHHHHHHHH
Q 023877 95 WVVTQEFLDKH-----QIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKET-------------KRTDGISTSDIIMRIV 156 (276)
Q Consensus 95 ~~~t~e~L~~~-----~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~-------------~rt~giSTT~Ii~rI~ 156 (276)
.+.+.. +--.++.+.+|+.+. +..+.+.+.|+..-+ .+..++|-++.+=-+.
T Consensus 102 -----~i~~ql~~~ld~k~~~v~ns~w~~~~-----~y~~~l~~~g~~~sv~rml~~d~~~~R~~~~~~is~~Ef~YpLm 171 (401)
T COG0162 102 -----TIKKQLGKFLDNKAEFVNNSDWLKKL-----NYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGISFTEFNYPLL 171 (401)
T ss_pred -----HHHHHhcccCCcceEEEechHHhCcC-----CHHHHHHHHHhHccHHHHHHhhhHHHHhccCCCCchhhhhhHHH
Confidence 111111 112355565555432 233344444432211 1234699999999999
Q ss_pred HhhH-HHHHHHhhcCCCcc
Q 023877 157 KDYN-QYVMRNLDRGYSRK 174 (276)
Q Consensus 157 ~~y~-~y~~Rnl~rg~~~~ 174 (276)
+.|| .|+...++-|-+=+
T Consensus 172 QayD~~~L~~dlq~GG~DQ 190 (401)
T COG0162 172 QAYDFVYLNKDLQLGGSDQ 190 (401)
T ss_pred HHHHHHHHccchhcCChHH
Confidence 9998 45555555544433
No 111
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=37.42 E-value=18 Score=32.12 Aligned_cols=51 Identities=10% Similarity=-0.007 Sum_probs=38.3
Q ss_pred hhhhhhhhhhhccccCC-CC--------Cccccchh---hHHhhhhhcCcceeEEEEeeCCcc
Q 023877 210 VFALLCHSIKAFCTFPF-PF--------PVFVFLDA---SWRAFDLSYGIQTRLLLVLKNGRL 260 (276)
Q Consensus 210 ~~~~~~~~id~~~~~~~-~~--------~~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~~ 260 (276)
+.++|...+|.+...+. |. .....+|| ++|.-+..+|.++.+.+.+|+...
T Consensus 2 il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~ 64 (265)
T cd01947 2 IAVVGHVEWDIFLSLDAPPQPGGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEI 64 (265)
T ss_pred EEEEeeeeEEEEEEecCCCCCCceeecccceeecCchHHHHHHHHHHcCCceEEEEEecCChH
Confidence 45678888898887763 22 23677888 777788999999999999985443
No 112
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=37.30 E-value=24 Score=31.85 Aligned_cols=31 Identities=10% Similarity=-0.100 Sum_probs=25.7
Q ss_pred CCCccccchh---hHHhhhhhcCcceeEEEEeeC
Q 023877 227 PFPVFVFLDA---SWRAFDLSYGIQTRLLLVLKN 257 (276)
Q Consensus 227 ~~~~~~f~gg---~~~~~~~~~g~~~~~~~~~~~ 257 (276)
..+....+|| ++|.++..+|.++.+.+.+|.
T Consensus 28 ~~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~ 61 (289)
T cd01164 28 VSSTRKDAGGKGINVARVLKDLGVEVTALGFLGG 61 (289)
T ss_pred cccccccCCcchhHHHHHHHHcCCCeEEEEEccC
Confidence 3455678999 578899999999999999984
No 113
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=36.81 E-value=1e+02 Score=31.62 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=23.5
Q ss_pred EEEEcccc--cCCChHHHH------HHHHHhhhCCCCeEEEEEcCC
Q 023877 22 RVYADGIY--DLFHFGHAR------SLEQAKKSFPNTYLLVGCCND 59 (276)
Q Consensus 22 ~V~~~G~F--D~fH~GHl~------~L~qAk~l~~~d~LIVGV~sD 59 (276)
.++..|.. .+.|+||++ ++.+|.+.-+.+...|..+.|
T Consensus 20 ~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd 65 (515)
T TIGR00467 20 YTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADN 65 (515)
T ss_pred EEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcC
Confidence 56666554 679999985 556666655445455555444
No 114
>PRK09954 putative kinase; Provisional
Probab=35.87 E-value=18 Score=34.19 Aligned_cols=55 Identities=7% Similarity=-0.043 Sum_probs=40.2
Q ss_pred hhhhhhhhhhhhccccC--CCCC------ccccchh---hHHhhhhhcCcceeEEEEeeCCccchh
Q 023877 209 KVFALLCHSIKAFCTFP--FPFP------VFVFLDA---SWRAFDLSYGIQTRLLLVLKNGRLMSF 263 (276)
Q Consensus 209 ~~~~~~~~~id~~~~~~--~~~~------~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~~~~~ 263 (276)
.+-++|...+|.....+ .|.+ ....+|| ++|..+..+|+++.|.+..|....-++
T Consensus 59 ~v~viG~~~vD~~~~~~~~~p~~~~~~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~ 124 (362)
T PRK09954 59 YCVVVGAINMDIRGMADIRYPQAASHPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGET 124 (362)
T ss_pred cEEEEEEEEEEEEEeeCCcCcCCCCCCceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHH
Confidence 46688999999887655 2332 3455788 777789999999999999995443333
No 115
>PRK10404 hypothetical protein; Provisional
Probab=35.31 E-value=1.3e+02 Score=24.15 Aligned_cols=14 Identities=36% Similarity=0.463 Sum_probs=10.9
Q ss_pred hhhHHHHHHhhhcC
Q 023877 263 FGATFMLLLLILRR 276 (276)
Q Consensus 263 ~~~~~~~~~~~~~~ 276 (276)
.+.||.+|+|+-||
T Consensus 88 agvGlllG~Ll~RR 101 (101)
T PRK10404 88 AAVGLVLGLLLARR 101 (101)
T ss_pred HHHHHHHHHHHhcC
Confidence 45788888888876
No 116
>PRK13753 dihydropteroate synthase; Provisional
Probab=35.14 E-value=4e+02 Score=25.25 Aligned_cols=150 Identities=19% Similarity=0.211 Sum_probs=84.1
Q ss_pred HHHHHHHhhhC--CCCeEEEEEcCChhhhccCC-CCCCCHHHHH---HHHHhcCCcceEe-eCCCCcchHHHHhhcCCCE
Q 023877 37 ARSLEQAKKSF--PNTYLLVGCCNDETTHKFKG-KTVMTEDERY---ESLRHCKWVDEVI-PDAPWVVTQEFLDKHQIDF 109 (276)
Q Consensus 37 l~~L~qAk~l~--~~d~LIVGV~sD~~~~~~Kg-rpi~s~eER~---e~l~~~r~VD~Vi-~~~p~~~t~e~L~~~~~D~ 109 (276)
-..+++|.++. +.|.+=||-.|.. .| .++-.++|.. ..|+.++..+-.+ ++....-..+..-+.+.|+
T Consensus 25 d~a~~~a~~m~~~GAdIIDIGgeSTr-----Pga~~vs~eeE~~Rv~pvI~~l~~~~~~ISIDT~~~~va~~al~aGadi 99 (279)
T PRK13753 25 AGAVTAAIEMLRVGSDVVDVGPAASH-----PDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRGVGY 99 (279)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCCC-----CCCCcCCHHHHHHHHHHHHHHHHhCCCcEEEECCCHHHHHHHHHcCCCE
Confidence 46677777653 3677777776542 22 3566666766 3455554332222 2332222334444568886
Q ss_pred EEeCCCcccccCCCCchHHHHHHhcC-e-EEEccc-cCC-------CChHHHHHHHHHhhHHHHHHHhhcCCCccc----
Q 023877 110 VAHDSLPYADASGAGKDVYEFVKAAG-K-FKETKR-TDG-------ISTSDIIMRIVKDYNQYVMRNLDRGYSRKD---- 175 (276)
Q Consensus 110 vv~G~d~y~~~~~~~~d~y~~lk~~G-~-~~~~~r-t~g-------iSTT~Ii~rI~~~y~~y~~Rnl~rg~~~~~---- 175 (276)
+= +-... ......+.+.+.+ . ++-.-+ .++ ....+++..+.+-+.+-+++-++.|..+..
T Consensus 100 IN-DVsg~-----~d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~IilD 173 (279)
T PRK13753 100 LN-DIQGF-----PDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILD 173 (279)
T ss_pred EE-eCCCC-----CchHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhEEEe
Confidence 42 21111 1223455666664 3 332221 111 123678888888778888888889998765
Q ss_pred ccchhhh----hhHHHHHHHHHHHHH
Q 023877 176 LGVSYVK----EKRLRVNMKLKKLQE 197 (276)
Q Consensus 176 l~~~~~~----~~~~~~~~~~~~~~~ 197 (276)
-++||.| +..+++-+.+++|+.
T Consensus 174 PGiGF~k~k~~~~n~~ll~~l~~l~~ 199 (279)
T PRK13753 174 PGMGFFLSPAPETSLHVLSNLQKLKS 199 (279)
T ss_pred CCCCCCCCCChHHHHHHHHhHHHHHH
Confidence 4889954 567777777777754
No 117
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=34.92 E-value=2.3e+02 Score=27.51 Aligned_cols=66 Identities=23% Similarity=0.167 Sum_probs=37.8
Q ss_pred CcceEeeCCCCcchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcC-eEEEccccCCCChHHHHHHHHH
Q 023877 85 WVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIMRIVK 157 (276)
Q Consensus 85 ~VD~Vi~~~p~~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~rt~giSTT~Ii~rI~~ 157 (276)
.||.||+.+|.. ..++++..||.=+|.+-.- .. ......+++++.| +-+..+| ..|..+|++-+.+
T Consensus 92 GvDaviv~Dpg~--i~l~~e~~p~l~ih~S~q~-~v--~N~~~~~f~~~~G~~rvVl~r--Els~~ei~~i~~~ 158 (347)
T COG0826 92 GVDAVIVADPGL--IMLARERGPDLPIHVSTQA-NV--TNAETAKFWKELGAKRVVLPR--ELSLEEIKEIKEQ 158 (347)
T ss_pred CCCEEEEcCHHH--HHHHHHhCCCCcEEEeeeE-ec--CCHHHHHHHHHcCCEEEEeCc--cCCHHHHHHHHHh
Confidence 467777766653 3566666766655554211 11 1223456788888 4555566 4777777654433
No 118
>PLN02946 cysteine-tRNA ligase
Probab=34.80 E-value=57 Score=33.83 Aligned_cols=41 Identities=32% Similarity=0.421 Sum_probs=26.5
Q ss_pred CCCCeEEEEcc--cccCCChHHHH------HHHHHhhhCCC-CeEEEEEc
Q 023877 17 SDRPVRVYADG--IYDLFHFGHAR------SLEQAKKSFPN-TYLLVGCC 57 (276)
Q Consensus 17 ~~r~~~V~~~G--~FD~fH~GHl~------~L~qAk~l~~~-d~LIVGV~ 57 (276)
.++.+..|+.| +||..|+||++ +|.+..+..+. ...|.+++
T Consensus 77 ~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niT 126 (557)
T PLN02946 77 VEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFT 126 (557)
T ss_pred CCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCC
Confidence 34556788887 79999999985 45666665522 23344443
No 119
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=34.49 E-value=4e+02 Score=26.38 Aligned_cols=119 Identities=21% Similarity=0.307 Sum_probs=66.2
Q ss_pred HHHHHHhhhCCCCeEEEEEcC--ChhhhccCCCCCCCHHHHHHHHHhcCC----cc-eEeeCCCCc------chHHHHhh
Q 023877 38 RSLEQAKKSFPNTYLLVGCCN--DETTHKFKGKTVMTEDERYESLRHCKW----VD-EVIPDAPWV------VTQEFLDK 104 (276)
Q Consensus 38 ~~L~qAk~l~~~d~LIVGV~s--D~~~~~~Kgrpi~s~eER~e~l~~~r~----VD-~Vi~~~p~~------~t~e~L~~ 104 (276)
++|+..++.+ ...+.+|+-| ++..+..+ +. .+.++-.+.++.++. +. ..+++-|+. -+.+++.+
T Consensus 288 e~l~~l~~aG-~~~v~iGiES~s~~~L~~~~-K~-~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~ 364 (472)
T TIGR03471 288 ETLKVMKENG-LRLLLVGYESGDQQILKNIK-KG-LTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHHcC-CCEEEEcCCCCCHHHHHHhc-CC-CCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 4444444443 4789999953 33333322 33 355555555554432 11 223455543 35577888
Q ss_pred cCCCEEEeC-CCcccccCCCCchHHHHHHhcCeEEE--------------ccccCCCChHHHHHHHHHhhHHHHH
Q 023877 105 HQIDFVAHD-SLPYADASGAGKDVYEFVKAAGKFKE--------------TKRTDGISTSDIIMRIVKDYNQYVM 164 (276)
Q Consensus 105 ~~~D~vv~G-~d~y~~~~~~~~d~y~~lk~~G~~~~--------------~~rt~giSTT~Ii~rI~~~y~~y~~ 164 (276)
+++|.+... -.|+ .+.+.|+.+++.|.+.. +-+++.+|..++.+.+.+-|..|..
T Consensus 365 l~~~~~~~~~l~P~-----PGT~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~~~~~~~~~~~~ 434 (472)
T TIGR03471 365 LNPHTIQVSLAAPY-----PGTELYDQAKQNGWITQDSAAMVDDTGHQMAAISYPHLSREEIFDGVERFYKRFYF 434 (472)
T ss_pred cCCCceeeeecccC-----CCcHHHHHHHHCCCcCCchhhcccCCCceeeeecCCCCCHHHHHHHHHHHHHHHcC
Confidence 888865433 2234 24567887777764321 1123578888888877777765443
No 120
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=34.38 E-value=32 Score=31.58 Aligned_cols=80 Identities=19% Similarity=0.306 Sum_probs=47.5
Q ss_pred eEeeCCCCcchHHHHhhcCCCEEEeCCCcccccC--CCCchHHHHHHhcCeEE--Eccc---cCCCChHHHHHHHHHhhH
Q 023877 88 EVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADAS--GAGKDVYEFVKAAGKFK--ETKR---TDGISTSDIIMRIVKDYN 160 (276)
Q Consensus 88 ~Vi~~~p~~~t~e~L~~~~~D~vv~G~d~y~~~~--~~~~d~y~~lk~~G~~~--~~~r---t~giSTT~Ii~rI~~~y~ 160 (276)
+++...|- +.+.+.++++|+-+.|..+..... ..+-|.-+.+++..... .... ....+++.||.-|+..|.
T Consensus 10 eIv~~~P~--aa~VF~~~gIdfCcgg~~tLeeA~~~~~gld~~~ll~eLn~~~~~~~~~~~~~~~~~~~~Lid~I~~~hH 87 (224)
T PRK13276 10 DVVTDYPK--AADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQYIQSAYH 87 (224)
T ss_pred HHHHhCcc--HHHHHHHcCCCcCCCCChhHHHHHHHHcCCCHHHHHHHHHHHhhccccCccChhhCCHHHHHHHHHHHHh
Confidence 44444454 468899999998555543333211 12233334444443332 1111 134788999999999999
Q ss_pred HHHHHHhhc
Q 023877 161 QYVMRNLDR 169 (276)
Q Consensus 161 ~y~~Rnl~r 169 (276)
.|+++++..
T Consensus 88 ~~~r~~lp~ 96 (224)
T PRK13276 88 EPLREEFKN 96 (224)
T ss_pred HHHHHHHHH
Confidence 999987754
No 121
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.04 E-value=2.7e+02 Score=25.84 Aligned_cols=61 Identities=26% Similarity=0.289 Sum_probs=37.1
Q ss_pred cCCCEEEeCCCcccccCCCCchHHHHHHhcCe-EEEc-----cccCCCChHHHHHHHHHhhHH---HHHHHhhcCCCccc
Q 023877 105 HQIDFVAHDSLPYADASGAGKDVYEFVKAAGK-FKET-----KRTDGISTSDIIMRIVKDYNQ---YVMRNLDRGYSRKD 175 (276)
Q Consensus 105 ~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~-~~~~-----~rt~giSTT~Ii~rI~~~y~~---y~~Rnl~rg~~~~~ 175 (276)
+..|+|.... .| | |.-+.+.++|+ ++.+ .||....|-.|+..|.+.+.. +.++ -+++++.|
T Consensus 152 y~ADVVLvpL---ED----G-DRteaLv~mGK~ViaIDLNPLSRTar~AsItIVDnivRA~p~li~~~~e--m~~~~ree 221 (256)
T COG1701 152 YSADVVLVPL---ED----G-DRTEALVRMGKTVIAIDLNPLSRTARKASITIVDNIVRAVPNLIEFVKE--MKNASREE 221 (256)
T ss_pred eeccEEEEec---CC----C-cHHHHHHHhCCeEEEEeCCccccccccCceeeeHHHHHHHHHHHHHHHH--HhccCHHH
Confidence 3567776543 21 2 45677999995 4443 477776666677776666653 3332 25677777
No 122
>PRK09850 pseudouridine kinase; Provisional
Probab=33.61 E-value=28 Score=32.08 Aligned_cols=56 Identities=9% Similarity=-0.196 Sum_probs=40.1
Q ss_pred hhhhhhhhhhhhccccCCC--------CCccccchh---hHHhhhhhcCcceeEEEEeeCCccchhh
Q 023877 209 KVFALLCHSIKAFCTFPFP--------FPVFVFLDA---SWRAFDLSYGIQTRLLLVLKNGRLMSFG 264 (276)
Q Consensus 209 ~~~~~~~~~id~~~~~~~~--------~~~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 264 (276)
.+-++|...+|.....+.| ...+..+|| ++|..+..+|.++.+.+..|....-+|.
T Consensus 6 ~i~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~i 72 (313)
T PRK09850 6 YVVIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSL 72 (313)
T ss_pred cEEEECcEEEeeeccCCCcCcCCCCCceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHHH
Confidence 4567788888887654432 224566888 7788899999999999999965443443
No 123
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=33.28 E-value=19 Score=31.78 Aligned_cols=44 Identities=11% Similarity=-0.039 Sum_probs=34.1
Q ss_pred hhhhhhhhhhhccccCCCCCccccchh---hHHhhhhhcCcceeEEEEee
Q 023877 210 VFALLCHSIKAFCTFPFPFPVFVFLDA---SWRAFDLSYGIQTRLLLVLK 256 (276)
Q Consensus 210 ~~~~~~~~id~~~~~~~~~~~~~f~gg---~~~~~~~~~g~~~~~~~~~~ 256 (276)
+.++|+..+|-+... ......+|| ++|..+..+|.++.+.+.+|
T Consensus 2 il~iG~~~iD~~~~~---~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG 48 (254)
T cd01937 2 IVIIGHVTIDEIVTN---GSGVVKPGGPATYASLTLSRLGLTVKLVTKVG 48 (254)
T ss_pred eEEEcceeEEEEecC---CceEEecCchhhhHHHHHHHhCCCeEEEEeeC
Confidence 456788888877652 234677899 67778889999999999999
No 124
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=32.59 E-value=67 Score=34.27 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=28.3
Q ss_pred CCCCCeEEEEcc--cccCCChHHHH------HHHHHhhhCC-CCeEEEEEc
Q 023877 16 PSDRPVRVYADG--IYDLFHFGHAR------SLEQAKKSFP-NTYLLVGCC 57 (276)
Q Consensus 16 ~~~r~~~V~~~G--~FD~fH~GHl~------~L~qAk~l~~-~d~LIVGV~ 57 (276)
..++.+..|+.| +||..|+||++ +|.+..+..+ ....+.+++
T Consensus 244 ~~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiT 294 (699)
T PRK14535 244 IDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNIT 294 (699)
T ss_pred CCCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCc
Confidence 335567788888 79999999986 4666666642 234455554
No 125
>PRK11142 ribokinase; Provisional
Probab=32.54 E-value=25 Score=31.93 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=38.7
Q ss_pred hhhhhhhhhhhhccccCC-CCC--------ccccchh---hHHhhhhhcCcceeEEEEeeCC
Q 023877 209 KVFALLCHSIKAFCTFPF-PFP--------VFVFLDA---SWRAFDLSYGIQTRLLLVLKNG 258 (276)
Q Consensus 209 ~~~~~~~~~id~~~~~~~-~~~--------~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~ 258 (276)
++-++|...+|.+...+. |.+ .+..+|| ++|..|..+|.++.+.+.+|+.
T Consensus 4 ~i~~iG~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D 65 (306)
T PRK11142 4 KLVVLGSINADHVLNLESFPRPGETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDD 65 (306)
T ss_pred cEEEECCceeeEEEEeCCCCCCCCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCC
Confidence 467788999998877664 222 2456888 7788899999999999999854
No 126
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=32.11 E-value=1e+02 Score=30.61 Aligned_cols=88 Identities=16% Similarity=0.031 Sum_probs=55.5
Q ss_pred CeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEE-EEcCChhhhccCCCCCCCHHHHHHHHHhc-C-C--cceEee-CC
Q 023877 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLV-GCCNDETTHKFKGKTVMTEDERYESLRHC-K-W--VDEVIP-DA 93 (276)
Q Consensus 20 ~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIV-GV~sD~~~~~~Kgrpi~s~eER~e~l~~~-r-~--VD~Vi~-~~ 93 (276)
-+.|+..=+-+|+|.+|..+.+.|.+.+ |-|++ -+..- .| .--++.+-|++..+++ + + -+.|++ .-
T Consensus 186 w~~VvafqTrnP~HraHe~l~~~a~e~~--d~lll~plvG~-----~k-~~di~~~~r~~~~~~~~~~y~p~~~v~l~~l 257 (391)
T PRK04149 186 WKTVVAFQTRNPPHRAHEYLQKCALEIV--DGLLLNPLVGE-----TK-SGDIPAEVRMEAYEALLKNYYPKDRVLLSVT 257 (391)
T ss_pred CCeEEEeecCCCCchHHHHHHHHHHHhc--CeEEEecCcCC-----CC-CCCCCHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 3567778889999999999999999986 54443 22211 12 2368999999998875 3 2 144432 11
Q ss_pred CC-----cchHH----HH-hhcCCCEEEeCCC
Q 023877 94 PW-----VVTQE----FL-DKHQIDFVAHDSL 115 (276)
Q Consensus 94 p~-----~~t~e----~L-~~~~~D~vv~G~d 115 (276)
|+ +.... .+ +.+++..++.|-|
T Consensus 258 p~~mryAGPrEa~lhAivrkN~GcTh~IvGrD 289 (391)
T PRK04149 258 PAAMRYAGPREAIFHAIVRKNYGCTHFIVGRD 289 (391)
T ss_pred cchhcccCcHHHHHHHHHHHhCCCCeEEECCC
Confidence 21 12222 22 3458999999864
No 127
>PTZ00292 ribokinase; Provisional
Probab=31.85 E-value=31 Score=31.89 Aligned_cols=51 Identities=6% Similarity=-0.004 Sum_probs=40.0
Q ss_pred hhhhhhhhhhhhccccCC-CCC--------ccccchh---hHHhhhhhcCcceeEEEEeeCCc
Q 023877 209 KVFALLCHSIKAFCTFPF-PFP--------VFVFLDA---SWRAFDLSYGIQTRLLLVLKNGR 259 (276)
Q Consensus 209 ~~~~~~~~~id~~~~~~~-~~~--------~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~ 259 (276)
++.++|...+|.+..++. |.+ ....+|| ++|..+..+|.++.+.+.+|+..
T Consensus 17 ~vlviG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~ 79 (326)
T PTZ00292 17 DVVVVGSSNTDLIGYVDRMPQVGETLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDG 79 (326)
T ss_pred CEEEEccceeeEEEecCCCCCCCCceeecCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCCh
Confidence 477899999999988884 322 1345788 78888999999999999998543
No 128
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=31.60 E-value=67 Score=32.16 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=23.2
Q ss_pred CCeEEEEcc--cccCCChHHHH------HHHHHhhhCC-CCeEEEEEc
Q 023877 19 RPVRVYADG--IYDLFHFGHAR------SLEQAKKSFP-NTYLLVGCC 57 (276)
Q Consensus 19 r~~~V~~~G--~FD~fH~GHl~------~L~qAk~l~~-~d~LIVGV~ 57 (276)
.+..+|+.| .+++.|+||++ ++.+..++.+ ....+.|++
T Consensus 22 ~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~t 69 (463)
T PRK00260 22 GKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNIT 69 (463)
T ss_pred CcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCC
Confidence 344566555 78999999986 4555555542 223344443
No 129
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=30.52 E-value=4.4e+02 Score=24.38 Aligned_cols=117 Identities=21% Similarity=0.160 Sum_probs=67.1
Q ss_pred EEcccccC-CChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCC--cceEeeCCCCcc--h
Q 023877 24 YADGIYDL-FHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKW--VDEVIPDAPWVV--T 98 (276)
Q Consensus 24 ~~~G~FD~-fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~--VD~Vi~~~p~~~--t 98 (276)
++-+.|+| +|.|=-+++++|++.+ -|-+|| +| ++.+|..+.+..|+. .+.|..-+|.+. -
T Consensus 93 vlm~Y~N~i~~~G~e~f~~~~~~aG-vdGvii---pD-----------Lp~ee~~~~~~~~~~~gl~~I~lvap~t~~er 157 (258)
T PRK13111 93 VLMTYYNPIFQYGVERFAADAAEAG-VDGLII---PD-----------LPPEEAEELRAAAKKHGLDLIFLVAPTTTDER 157 (258)
T ss_pred EEEecccHHhhcCHHHHHHHHHHcC-CcEEEE---CC-----------CCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHH
Confidence 57788888 6669999999999986 455665 34 445777777776653 566654455431 2
Q ss_pred HHHHhhcCCCEEEe-CCCcccccC-C---CCchHHHHHHhcC--eEEEccccCCCChHHHHHHHHHh
Q 023877 99 QEFLDKHQIDFVAH-DSLPYADAS-G---AGKDVYEFVKAAG--KFKETKRTDGISTSDIIMRIVKD 158 (276)
Q Consensus 99 ~e~L~~~~~D~vv~-G~d~y~~~~-~---~~~d~y~~lk~~G--~~~~~~rt~giSTT~Ii~rI~~~ 158 (276)
.+.+.+...+++.. +.....+.. . ...+..+.+++.. .+.. .-|||+.+=+.++.+.
T Consensus 158 i~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~v---GfGI~~~e~v~~~~~~ 221 (258)
T PRK13111 158 LKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAV---GFGISTPEQAAAIAAV 221 (258)
T ss_pred HHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEE---EcccCCHHHHHHHHHh
Confidence 34566677787643 221222211 1 1122344455542 2222 3488887666666553
No 130
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=30.44 E-value=1.9e+02 Score=28.19 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=23.5
Q ss_pred eEEEEcc--cccCCChHHHH------HHHHHhhhCCCCeEEEEEcCCh
Q 023877 21 VRVYADG--IYDLFHFGHAR------SLEQAKKSFPNTYLLVGCCNDE 60 (276)
Q Consensus 21 ~~V~~~G--~FD~fH~GHl~------~L~qAk~l~~~d~LIVGV~sD~ 60 (276)
+.++..| .-.++|+||++ ++.++.++-+ ..+..-..+|+
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G-~~v~~v~~~Dd 66 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLG-FEVRLIYSWDD 66 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcC-CCEEEEEEEcC
Confidence 3555444 45899999986 5666776653 33443334454
No 131
>PRK00124 hypothetical protein; Validated
Probab=30.25 E-value=3.6e+02 Score=23.28 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=59.5
Q ss_pred cceEeeCCCCcchHHHH-hhcCC-CEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHHhhHH-H
Q 023877 86 VDEVIPDAPWVVTQEFL-DKHQI-DFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQ-Y 162 (276)
Q Consensus 86 VD~Vi~~~p~~~t~e~L-~~~~~-D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~y~~-y 162 (276)
+..|+++.-.+....+| +..++ |+|+..+.|.+ +.+-+.|-....||..-++...|-.++...|-. -
T Consensus 45 v~~v~V~~g~D~AD~~Iv~~~~~gDiVIT~Di~LA----------a~~l~Kga~vl~prG~~yt~~nI~~~L~~R~~~~~ 114 (151)
T PRK00124 45 IRTVYVDAGFDAADNEIVQLAEKGDIVITQDYGLA----------ALALEKGAIVLNPRGYIYTNDNIDQLLAMRDLMAT 114 (151)
T ss_pred eEEEEeCCCCChHHHHHHHhCCCCCEEEeCCHHHH----------HHHHHCCCEEECCCCcCCCHHHHHHHHHHHHHHHH
Confidence 55566654443223333 33344 88887765443 345556777788999999999998887666532 2
Q ss_pred HHHHhhcCCCcccccchhhhhhHHHHHHHHHHHHHH
Q 023877 163 VMRNLDRGYSRKDLGVSYVKEKRLRVNMKLKKLQEK 198 (276)
Q Consensus 163 ~~Rnl~rg~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 198 (276)
++| .|... .-.=.|.++-+-++.+.++++=.+
T Consensus 115 lR~---~G~~t-~Gp~~~~~~Dr~~F~~~L~~~l~~ 146 (151)
T PRK00124 115 LRR---SGIRT-GGPKPFTQEDRSRFEAELDKLIRR 146 (151)
T ss_pred HHH---cCCCC-CCCCCCCHHHHHHHHHHHHHHHHH
Confidence 322 13211 122346777788888777776554
No 132
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=29.30 E-value=78 Score=31.80 Aligned_cols=39 Identities=28% Similarity=0.504 Sum_probs=24.0
Q ss_pred CCeEEEEcc--cccCCChHHHH------HHHHHhhhCC-CCeEEEEEc
Q 023877 19 RPVRVYADG--IYDLFHFGHAR------SLEQAKKSFP-NTYLLVGCC 57 (276)
Q Consensus 19 r~~~V~~~G--~FD~fH~GHl~------~L~qAk~l~~-~d~LIVGV~ 57 (276)
+...+|+.| .+|..|+||++ .+.+..++.+ ....+.+++
T Consensus 20 ~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~t 67 (465)
T TIGR00435 20 GKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNIT 67 (465)
T ss_pred CcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 345566666 68999999986 3445555442 234455554
No 133
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=28.93 E-value=1.1e+02 Score=24.83 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcceEee-CCCCcchHHHHhhcCCCEEEeC
Q 023877 35 GHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIP-DAPWVVTQEFLDKHQIDFVAHD 113 (276)
Q Consensus 35 GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~Vi~-~~p~~~t~e~L~~~~~D~vv~G 113 (276)
|=+.+|+.|-+..+.++++|.+..+. + +|..+++.+.|+-.-++ +..|...+ ....+++++.|
T Consensus 42 ~lvaLLElAee~L~c~~vvic~~k~~--------~-----d~~~Llr~l~~vGF~lv~~~~~~~~~---~~~s~~~lfm~ 105 (108)
T PF02100_consen 42 SLVALLELAEEKLGCSHVVICLDKNR--------P-----DRASLLRTLMWVGFELVTPGHPSVPP---DITSPDWLFMG 105 (108)
T ss_dssp HHHHHHHHHHHHH----EEEEE---S--------S------HHHHHHHHTTT--EEE----SS-SS-------S--EEEE
T ss_pred HHHHHHHHhcCcCCCCEEEEEEECCc--------h-----hHHHhhhhcEeeccEecCCCCCCCCC---cCCCCCEEEEE
Confidence 44788999976444689999997653 1 18899999999975544 44443212 22345555544
No 134
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=28.58 E-value=96 Score=24.96 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 023877 182 KEKRLRVNMKLKKLQEKVKQQQERVGEKVFAL 213 (276)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (276)
|+-+-+|...|.+|++++++.+.+..||+..+
T Consensus 2 kk~~s~I~~eI~kLqe~lk~~e~keAERigRi 33 (98)
T PRK13848 2 KKPSSKIREEIAKLQEQLKQAETREAERIGRI 33 (98)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788999999999999999999998654
No 135
>TIGR03248 galactar-dH20 galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0714).
Probab=28.14 E-value=56 Score=33.53 Aligned_cols=131 Identities=10% Similarity=0.071 Sum_probs=75.7
Q ss_pred EEeCCCcccccCCCCch----HHHHHHhcC-eEEEccccCC----------CChHHHHHHHHHhhHHHHHHHhhcCCCcc
Q 023877 110 VAHDSLPYADASGAGKD----VYEFVKAAG-KFKETKRTDG----------ISTSDIIMRIVKDYNQYVMRNLDRGYSRK 174 (276)
Q Consensus 110 vv~G~d~y~~~~~~~~d----~y~~lk~~G-~~~~~~rt~g----------iSTT~Ii~rI~~~y~~y~~Rnl~rg~~~~ 174 (276)
-+=|+|.+.... .++ ..+.|-+.| ..+...-++- .-+.++..++++..+.|.++-.+.|.+.
T Consensus 271 ~CGGSD~~SGit--ANPavG~~sD~LV~~GGt~ilsEt~E~~GaE~iL~~Ra~~~ev~~k~~~~i~~~~~y~~~~g~~~- 347 (507)
T TIGR03248 271 QCGGSDAFSGVT--ANPAVGFAADLLVRAGATVMFSEVTEVRDAIHLLTPRAETAEVAKALVREMDWYDRYLARGQADR- 347 (507)
T ss_pred ecCCCCCccccc--cChHHHHHHHHHHHcCCeEEecCCcceeChHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHcCCCc-
Confidence 344566555432 122 244555554 6555544432 2345555666655555555555587776
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccccC-CC-CCccccchh------hHHhhhhhcC
Q 023877 175 DLGVSYVKEKRLRVNMKLKKLQEKVKQQQERVGEKVFALLCHSIKAFCTFP-FP-FPVFVFLDA------SWRAFDLSYG 246 (276)
Q Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~-~~~~~f~gg------~~~~~~~~~g 246 (276)
+-|- .--+.+.=+...+||+-.-+++-|..-|..-+.+. +| .+...|.+. ++. -+.+.|
T Consensus 348 ~~nP------------SpGN~~GGLtTieEKSLGa~~K~Gt~pi~~Vl~Y~e~~~~~Gl~lmdtPg~D~~s~T-~~~A~G 414 (507)
T TIGR03248 348 SANT------------TPGNKKGGLSNIVEKALGSIVKSGSSPINGVLSPGERVTAKGLIFAATPASDFVCGT-LQLASG 414 (507)
T ss_pred cCCC------------CcchhccchhHHHHHhccchhhcCCCchhhhcccCCcCCCCCEEEEeCCCCCHHHHH-HHHhcC
Confidence 3233 23445566677777777778877766565555444 55 566777776 333 488889
Q ss_pred cceeEEE-Eee
Q 023877 247 IQTRLLL-VLK 256 (276)
Q Consensus 247 ~~~~~~~-~~~ 256 (276)
|+.-++| +-|
T Consensus 415 a~li~FTTGrG 425 (507)
T TIGR03248 415 MNLHVFTTGRG 425 (507)
T ss_pred CeEEEecCCCC
Confidence 9988554 444
No 136
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=27.50 E-value=85 Score=28.15 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=24.7
Q ss_pred CCeEEEEcc--cccCCChHHHH------HHHHHhhhCCCCeEEEEEcCCh
Q 023877 19 RPVRVYADG--IYDLFHFGHAR------SLEQAKKSFPNTYLLVGCCNDE 60 (276)
Q Consensus 19 r~~~V~~~G--~FD~fH~GHl~------~L~qAk~l~~~d~LIVGV~sD~ 60 (276)
+...+|+.| .+++.|+||++ .+.+.+++. |..+.-..+.|+
T Consensus 19 ~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~-G~~V~~~~g~dd 67 (213)
T cd00672 19 GLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDL-GYKVRYVQNITD 67 (213)
T ss_pred CCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhc-CCeeEEEeecCC
Confidence 444556555 68999999974 556666665 334444444443
No 137
>PLN02323 probable fructokinase
Probab=27.11 E-value=66 Score=29.79 Aligned_cols=56 Identities=7% Similarity=-0.137 Sum_probs=41.0
Q ss_pred hhhhhhhhhhhhccccC-CCCC----ccccchh---hHHhhhhhcCcceeEEEEeeCCccchhh
Q 023877 209 KVFALLCHSIKAFCTFP-FPFP----VFVFLDA---SWRAFDLSYGIQTRLLLVLKNGRLMSFG 264 (276)
Q Consensus 209 ~~~~~~~~~id~~~~~~-~~~~----~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 264 (276)
++-.+|...+|.+...+ .|.. ....+|| ++|..+..+|.++.+.+.+|+...-++.
T Consensus 12 ~i~~iG~~~vD~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i 75 (330)
T PLN02323 12 LVVCFGEMLIDFVPTVSGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHML 75 (330)
T ss_pred cEEEechhhhhhccCCCCCCcccccceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHHHH
Confidence 57788999999887654 2311 1467888 6777788899999999999976554443
No 138
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=27.09 E-value=43 Score=32.11 Aligned_cols=42 Identities=29% Similarity=0.478 Sum_probs=26.7
Q ss_pred CCCCCeEEEEcc--cccCCChHHHH------HHHHHhhhCC-CCeEEEEEc
Q 023877 16 PSDRPVRVYADG--IYDLFHFGHAR------SLEQAKKSFP-NTYLLVGCC 57 (276)
Q Consensus 16 ~~~r~~~V~~~G--~FD~fH~GHl~------~L~qAk~l~~-~d~LIVGV~ 57 (276)
-.++...+|+.| +||..|+||++ +|.+..+..+ ....|..|+
T Consensus 4 ~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiT 54 (300)
T PF01406_consen 4 LNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNIT 54 (300)
T ss_dssp SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB
T ss_pred CCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEecc
Confidence 345566788888 79999999986 5566666542 234466666
No 139
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.05 E-value=4.2e+02 Score=23.07 Aligned_cols=40 Identities=13% Similarity=-0.031 Sum_probs=27.3
Q ss_pred CCcchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEcc
Q 023877 94 PWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETK 141 (276)
Q Consensus 94 p~~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~ 141 (276)
...+..|-|...+||.|+.... . . +.++.+++.|.++.++
T Consensus 54 ~~~~~~E~i~~l~PDlVi~~~~--~-----~-~~~~~l~~~~p~~~~~ 93 (248)
T cd01138 54 VDEPNLEKVLELKPDLIIVSSK--Q-----E-ENYEKLSKIAPTVPVS 93 (248)
T ss_pred CCCCCHHHHhccCCCEEEeCCc--c-----H-HHHHHHHhhCCEEEEc
Confidence 3456789999999999986541 1 1 2567788888665554
No 140
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=26.18 E-value=1e+02 Score=28.83 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=52.6
Q ss_pred CCCCCeEEEEcccccCCChHHHHHHHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcceEe
Q 023877 16 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVI 90 (276)
Q Consensus 16 ~~~r~~~V~~~G~FD~fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~Vi 90 (276)
.+.+-+.||+.|- -=.-|-+-|++=-+.| |+.|-..|-+|..+.+.||.-..++.++....|+|+.-.-||
T Consensus 8 ~DT~~TKifVggL---~w~T~~~~l~~yFeqf-GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piI 78 (247)
T KOG0149|consen 8 GDTTFTKIFVGGL---AWETHKETLRRYFEQF-GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPII 78 (247)
T ss_pred CCceEEEEEEcCc---ccccchHHHHHHHHHh-CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcc
Confidence 4445567899883 2234555566656667 688888888899899999988999999999999998644444
No 141
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=26.00 E-value=3.9e+02 Score=22.28 Aligned_cols=98 Identities=17% Similarity=0.252 Sum_probs=56.2
Q ss_pred CCcceEeeCCCCcchHHHH-hhcCC-CEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHHhhHH
Q 023877 84 KWVDEVIPDAPWVVTQEFL-DKHQI-DFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQ 161 (276)
Q Consensus 84 r~VD~Vi~~~p~~~t~e~L-~~~~~-D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~y~~ 161 (276)
.++..|+++.-.+....+| +..++ |+|+..|.+.+ +.+-+.|-++..||..-++...|-.++...|-.
T Consensus 27 ~~~~~i~Vd~g~DaaD~~I~~~~~~gDiVITqDigLA----------~~~l~Kga~vl~~rG~~yt~~nI~~~L~~R~~~ 96 (130)
T PF02639_consen 27 PYVEMIVVDSGFDAADFYIVNHAKPGDIVITQDIGLA----------SLLLAKGAYVLNPRGKEYTKENIDELLAMRHLM 96 (130)
T ss_pred CCeEEEEECCCCChHHHHHHHcCCCCCEEEECCHHHH----------HHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 3666677655444233344 33344 88887765443 345567878888999999999998887666643
Q ss_pred H-HHHHhhcCCCcccccchhhhhhHHHHHHHHHHH
Q 023877 162 Y-VMRNLDRGYSRKDLGVSYVKEKRLRVNMKLKKL 195 (276)
Q Consensus 162 y-~~Rnl~rg~~~~~l~~~~~~~~~~~~~~~~~~~ 195 (276)
. +++.=.+.-.|+ .|.++..-++.+.++++
T Consensus 97 ~~lR~~G~~~~gpk----~~~~~d~~~F~~~L~~~ 127 (130)
T PF02639_consen 97 AKLRRAGKRTKGPK----KFTKKDRQRFANALDRL 127 (130)
T ss_pred HHHHHhCCCCCCCC----CCCHHHHHHHHHHHHHH
Confidence 3 332111111222 24455555555555543
No 142
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=24.86 E-value=43 Score=35.24 Aligned_cols=40 Identities=33% Similarity=0.621 Sum_probs=26.8
Q ss_pred CCCeEEEEcc--cccCCChHHHH------HHHHHhh-hCC-CCeEEEEEc
Q 023877 18 DRPVRVYADG--IYDLFHFGHAR------SLEQAKK-SFP-NTYLLVGCC 57 (276)
Q Consensus 18 ~r~~~V~~~G--~FD~fH~GHl~------~L~qAk~-l~~-~d~LIVGV~ 57 (276)
++.+..|+.| +||..|+||++ +|++..+ +++ ....+.+|+
T Consensus 58 ~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nit 107 (651)
T PTZ00399 58 GRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNIT 107 (651)
T ss_pred CCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCC
Confidence 4456677777 79999999986 4666666 552 234455554
No 143
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=23.99 E-value=58 Score=29.60 Aligned_cols=48 Identities=8% Similarity=-0.078 Sum_probs=34.7
Q ss_pred hhhhhhhhhhhhccccCCC-CCccccchh---hHHhhhhhcCcceeEEEEeeCCc
Q 023877 209 KVFALLCHSIKAFCTFPFP-FPVFVFLDA---SWRAFDLSYGIQTRLLLVLKNGR 259 (276)
Q Consensus 209 ~~~~~~~~~id~~~~~~~~-~~~~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~ 259 (276)
++..+|...+|.+-. + ......+|| .+|..+..+|.++.+.+.+|+..
T Consensus 4 ~il~iG~~~iD~~~~---~~~~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~ 55 (304)
T PRK09434 4 KVWVLGDAVVDLIPE---GENRYLKCPGGAPANVAVGIARLGGESGFIGRVGDDP 55 (304)
T ss_pred cEEEecchheeeecC---CCCceeeCCCChHHHHHHHHHHcCCCceEEEEecCch
Confidence 567889999997722 2 222445888 55667788999999999999554
No 144
>PF06023 DUF911: Archaeal protein of unknown function (DUF911); InterPro: IPR009260 This family consists of several archaeal strongly conserved proteins whose genes are associated with CRISPRs (Clustered, Regularly Interspaced Short Palidromic Repeats). The function of these proteins has not been experimentally determined, but computational analysis has suggested that they may function as nucleases in DNA repair, similar to RecB (IPR004586 from INTERPRO) [].
Probab=23.99 E-value=4.6e+02 Score=25.10 Aligned_cols=103 Identities=19% Similarity=0.173 Sum_probs=49.2
Q ss_pred HHHHHhhcCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh--c------cccCCCCCcccc
Q 023877 162 YVMRNLDRGYSRKDLGVSYVKEKRLRVNMKLKKLQEKVKQQQERVGEKVFALLCHSIKA--F------CTFPFPFPVFVF 233 (276)
Q Consensus 162 y~~Rnl~rg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~--~------~~~~~~~~~~~f 233 (276)
-++|-.-.|..+..-...-+.+..+ ..-++++++.+..++-...++.---.++--. | ....-|.-++.-
T Consensus 93 ~~kr~i~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~a~~~~v~ak~~~~~~dsl~~~~~P~~~E~~ 169 (289)
T PF06023_consen 93 EAKRLIYSGVPPWWDLERILMEDEF---EAPEELREKARKLYKYEASRLLAELDEVRAKYPYLTEDSLASLAIPIAVEYP 169 (289)
T ss_pred HHHHHHHcCCCccHHHHHHhhhhhh---hchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhccCceEEEec
Confidence 3445455555555433333333334 2334455555555554333332211111111 1 111146667777
Q ss_pred chhh---------HHhhhhhcCcceeEEEEeeCCccchh----hhHHHHHH
Q 023877 234 LDAS---------WRAFDLSYGIQTRLLLVLKNGRLMSF----GATFMLLL 271 (276)
Q Consensus 234 ~gg~---------~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~ 271 (276)
++|+ +.++....+ +..-.+.|+..+| .|||+|.+
T Consensus 170 vDGs~LGLS~~lr~Da~~~~~~----~Vve~K~G~~~~~h~lalaGYALA~ 216 (289)
T PF06023_consen 170 VDGSPLGLSDNLRVDAFVLFGP----VVVEVKTGEYRDFHRLALAGYALAI 216 (289)
T ss_pred cCCcccccccccccceecccCc----eEEEEecCCchhHHHHHHHHHHHHH
Confidence 7772 223223333 3333457888888 89999975
No 145
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=22.78 E-value=2e+02 Score=26.40 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=35.6
Q ss_pred EeeCCCCcchHHHHhhcCCCEE----EeCCCcccccC-CCCchHHHHHHhcCeEEEccccCCCChHHHHHH
Q 023877 89 VIPDAPWVVTQEFLDKHQIDFV----AHDSLPYADAS-GAGKDVYEFVKAAGKFKETKRTDGISTSDIIMR 154 (276)
Q Consensus 89 Vi~~~p~~~t~e~L~~~~~D~v----v~G~d~y~~~~-~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~r 154 (276)
++.++..+++.+++++++++++ ..|+..|.|.. -..++.|+.+++.+. .|.|...|..++.+-
T Consensus 3 iitDS~~dl~~~~~~~~~I~vvPl~I~~~~~~y~D~~~i~~~~~y~~~~~~~~---~p~TS~ps~~~~~~~ 70 (275)
T TIGR00762 3 IVTDSTADLPPELIEEYGITVVPLTVIIDGKTYRDGVDITPEEFYEKLKESKE---LPKTSQPSPGEFLEL 70 (275)
T ss_pred EEEecccCCCHHHHHHcCCEEEEEEEEECCEEeecCCCCCHHHHHHHHHhcCC---CCCcCCCCHHHHHHH
Confidence 3445556667788888877763 45555555421 123455666654333 345666666666553
No 146
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=22.65 E-value=1.5e+02 Score=22.12 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=29.0
Q ss_pred HhhHHHHHHHhhcCCCcccccchhhhhhHHHHHHHHHHHHHH
Q 023877 157 KDYNQYVMRNLDRGYSRKDLGVSYVKEKRLRVNMKLKKLQEK 198 (276)
Q Consensus 157 ~~y~~y~~Rnl~rg~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 198 (276)
++|+.-+.--.+ +...-|.|--+|.|++-+|..|.++.++
T Consensus 21 ~D~DaaInAmi~--~~cD~L~iqRmKkKKLAlKDki~~lED~ 60 (67)
T COG5481 21 ADFDAAINAMIA--TGCDALRIQRMKKKKLALKDKITKLEDQ 60 (67)
T ss_pred hhHHHHHHHHHH--hCCcHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 345554544444 6777888989999999988888887776
No 147
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=22.52 E-value=6.1e+02 Score=23.30 Aligned_cols=138 Identities=14% Similarity=0.162 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhhhC--CCCeEEEEEcCChhhhccCC-CCCCCHHHHHHHH---HhcCCc-ceEe-eCCCCcchHHHHhhc
Q 023877 34 FGHARSLEQAKKSF--PNTYLLVGCCNDETTHKFKG-KTVMTEDERYESL---RHCKWV-DEVI-PDAPWVVTQEFLDKH 105 (276)
Q Consensus 34 ~GHl~~L~qAk~l~--~~d~LIVGV~sD~~~~~~Kg-rpi~s~eER~e~l---~~~r~V-D~Vi-~~~p~~~t~e~L~~~ 105 (276)
.+.-..+++|+++. +.+.+=||-.+-. .+ .++-.++|..++. +.++.. |-.+ ++.+..-..+..-+.
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~-----p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~ 94 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTR-----PGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEA 94 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCC-----CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHc
Confidence 45567777777652 3677777643321 12 2455555633333 334332 4333 243332222333345
Q ss_pred CCCEEEeCCCcccccCCCCchHHHHHHhcC-eEEEccccCCC--------ChHHHHHHHHHhhHHHHHHHhhcCCCcccc
Q 023877 106 QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGI--------STSDIIMRIVKDYNQYVMRNLDRGYSRKDL 176 (276)
Q Consensus 106 ~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~rt~gi--------STT~Ii~rI~~~y~~y~~Rnl~rg~~~~~l 176 (276)
+.|++=+..- . ..++..+.++++| .++..... |+ ...+++..+.+...+-+++-.+.|+.+.++
T Consensus 95 G~~iINsis~--~----~~~~~~~l~~~~~~~vV~m~~~-g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~i 167 (257)
T TIGR01496 95 GADIINDVSG--G----QDPAMLEVAAEYGVPLVLMHMR-GTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERI 167 (257)
T ss_pred CCCEEEECCC--C----CCchhHHHHHHcCCcEEEEeCC-CCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 7887654431 1 1235677888886 55554321 22 124566666666666677777899976554
Q ss_pred ----cchhhhh
Q 023877 177 ----GVSYVKE 183 (276)
Q Consensus 177 ----~~~~~~~ 183 (276)
.+||.+.
T Consensus 168 ilDPg~gf~ks 178 (257)
T TIGR01496 168 ILDPGIGFGKT 178 (257)
T ss_pred EEECCCCcccC
Confidence 5677763
No 148
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=22.31 E-value=1.1e+02 Score=27.44 Aligned_cols=29 Identities=3% Similarity=-0.038 Sum_probs=25.0
Q ss_pred cccchh---hHHhhhhhcCcceeEEEEeeCCc
Q 023877 231 FVFLDA---SWRAFDLSYGIQTRLLLVLKNGR 259 (276)
Q Consensus 231 ~~f~gg---~~~~~~~~~g~~~~~~~~~~~~~ 259 (276)
+.++|| .+|.++..+|.++.+++.+|+..
T Consensus 27 ~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~ 58 (293)
T TIGR02152 27 QIGPGGKGANQAVAAARLGAEVSMIGKVGDDA 58 (293)
T ss_pred eecCCCcHHHHHHHHHHCCCCEEEEEEecCCc
Confidence 678898 68889999999999999999543
No 149
>COG5570 Uncharacterized small protein [Function unknown]
Probab=22.11 E-value=79 Score=22.90 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=23.1
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHH
Q 023877 171 YSRKDLGVSYVKEKRLRVNMKLKKLQEK 198 (276)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 198 (276)
-+-.++-|+-+|-++++||..|.+|+..
T Consensus 28 Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 28 PSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3556788888999999999999988754
No 150
>PRK13761 hypothetical protein; Provisional
Probab=21.78 E-value=5.2e+02 Score=24.21 Aligned_cols=61 Identities=26% Similarity=0.296 Sum_probs=37.3
Q ss_pred CCCEEEeCCCcccccCCCCchHHHHHHhcCe-EEEc-----cccCCCChHHHHHHHHHhhHHHHH--HHhhcCCCccc
Q 023877 106 QIDFVAHDSLPYADASGAGKDVYEFVKAAGK-FKET-----KRTDGISTSDIIMRIVKDYNQYVM--RNLDRGYSRKD 175 (276)
Q Consensus 106 ~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~-~~~~-----~rt~giSTT~Ii~rI~~~y~~y~~--Rnl~rg~~~~~ 175 (276)
..|+|.... .| | |.-+.+.++|+ ++.+ .||...+|-.|+..|.+.+...++ +.+ ++.++.+
T Consensus 150 ~ADVVLVPL---ED----G-DR~EaL~~mGK~VI~IDLNPLSRTar~A~itIVDni~RA~p~m~~~~~el-k~~~~~e 218 (248)
T PRK13761 150 SADVVLVPL---ED----G-DRTEALVKMGKTVIAIDLNPLSRTARTATITIVDNITRAVPNMTEYAREL-KKKDREE 218 (248)
T ss_pred eccEEEecC---CC----C-cHHHHHHHcCCeEEEEeCCCcccccccCceeeehhHHHHHHHHHHHHHHH-hcCCHHH
Confidence 557766543 22 2 55678999995 4543 478888888888877776653332 222 3455555
No 151
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=21.60 E-value=4.2e+02 Score=21.10 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=23.1
Q ss_pred HHHHhcC-eEEEccccCCCChHHHHHHHHH
Q 023877 129 EFVKAAG-KFKETKRTDGISTSDIIMRIVK 157 (276)
Q Consensus 129 ~~lk~~G-~~~~~~rt~giSTT~Ii~rI~~ 157 (276)
+.++..| .++.++.....+.+.|++.|.+
T Consensus 95 ~~l~~agiplir~~~~~~~~~~~l~~~l~~ 124 (126)
T PF10881_consen 95 RVLKKAGIPLIRISPKDSYSVEELRRDLRE 124 (126)
T ss_pred HHHHHCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 3577788 7888877788999999888754
No 152
>PF12153 CAP18_C: LPS binding domain of CAP18 (C terminal); InterPro: IPR022746 This entry represents the cathlecidin antimicrobial C-terminal peptides. The C terminus is cleaved from the cathlecidin precursor, and is approximately 30 amino acids in length with a helical structure. This entry is found in association with PF00666 from PFAM. The C terminus peptides possess antimicrobial activity by virtue of their binding to bacterial lipopolysaccharides [][].; GO: 0042742 defense response to bacterium; PDB: 1LYP_A 2LMF_A 2FBU_H 2FBS_N 2K6O_A 2FCG_F.
Probab=21.33 E-value=1.5e+02 Score=18.71 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=12.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhh
Q 023877 199 VKQQQERVGEKVFALLCHSIK 219 (276)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~id 219 (276)
+.+..+++++.+..+|..|=|
T Consensus 4 lrk~~eKigeklkkIGQkIKD 24 (28)
T PF12153_consen 4 LRKGGEKIGEKLKKIGQKIKD 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666655
No 153
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=21.10 E-value=66 Score=32.76 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=22.2
Q ss_pred CCeEEEEccc--ccCCChHHHH------HHHHHhhhC
Q 023877 19 RPVRVYADGI--YDLFHFGHAR------SLEQAKKSF 47 (276)
Q Consensus 19 r~~~V~~~G~--FD~fH~GHl~------~L~qAk~l~ 47 (276)
..+.+|+.|- ||..|+||++ +|.+..+..
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~ 56 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLL 56 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHc
Confidence 4677899885 9999999986 456666665
No 154
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=21.09 E-value=55 Score=30.11 Aligned_cols=142 Identities=14% Similarity=0.037 Sum_probs=74.2
Q ss_pred eEEEEcccccCCChHHHHHHHHHhhhC-CCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcCCcceEeeCCCC----
Q 023877 21 VRVYADGIYDLFHFGHARSLEQAKKSF-PNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPW---- 95 (276)
Q Consensus 21 ~~V~~~G~FD~fH~GHl~~L~qAk~l~-~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r~VD~Vi~~~p~---- 95 (276)
.++++.|-=|-++.= -.|.+.+ .=.+|+..+.++..... ...+--+=++.+..+-.+.-+......
T Consensus 3 ~~aL~SGGKDS~~Al-----~~a~~~G~eV~~Ll~~~p~~~dS~m----~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~ 73 (223)
T COG2102 3 VIALYSGGKDSFYAL-----YLALEEGHEVVYLLTVKPENGDSYM----FHTPNLELAELQAEAMGIPLVTFDTSGEEER 73 (223)
T ss_pred EEEEEecCcHHHHHH-----HHHHHcCCeeEEEEEEecCCCCeee----eeccchHHHHHHHHhcCCceEEEecCccchh
Confidence 467788877765333 3344442 11344444444431111 111222222333334344444332222
Q ss_pred --cchHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcCeEEEccccCCCChHHHHHHHHHh-hHHHHHHHhhcCCC
Q 023877 96 --VVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKD-YNQYVMRNLDRGYS 172 (276)
Q Consensus 96 --~~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G~~~~~~rt~giSTT~Ii~rI~~~-y~~y~~Rnl~rg~~ 172 (276)
....+.|+.++.|.|+.|+. +... ....+-..+++.|-..+.|-. +.++.++...+++. .+..+-.--+.|..
T Consensus 74 eve~L~~~l~~l~~d~iv~GaI-~s~y--qk~rve~lc~~lGl~~~~PLW-g~d~~ell~e~~~~Gf~~~Iv~Vsa~gL~ 149 (223)
T COG2102 74 EVEELKEALRRLKVDGIVAGAI-ASEY--QKERVERLCEELGLKVYAPLW-GRDPEELLEEMVEAGFEAIIVAVSAEGLD 149 (223)
T ss_pred hHHHHHHHHHhCcccEEEEchh-hhHH--HHHHHHHHHHHhCCEEeeccc-CCCHHHHHHHHHHcCCeEEEEEEeccCCC
Confidence 12345788889999999984 2221 122334456777877776654 78888888887765 65544443444555
Q ss_pred ccc
Q 023877 173 RKD 175 (276)
Q Consensus 173 ~~~ 175 (276)
.+.
T Consensus 150 ~~~ 152 (223)
T COG2102 150 ESW 152 (223)
T ss_pred hHH
Confidence 554
No 155
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=21.06 E-value=1.7e+02 Score=24.11 Aligned_cols=55 Identities=20% Similarity=0.094 Sum_probs=31.2
Q ss_pred eEEEEcccccCCChHHHHH---HHHHhhhCCCCeEEEEEcCChhhhccCCCCCCCHHHHHHHHHhcC
Q 023877 21 VRVYADGIYDLFHFGHARS---LEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCK 84 (276)
Q Consensus 21 ~~V~~~G~FD~fH~GHl~~---L~qAk~l~~~d~LIVGV~sD~~~~~~Kgrpi~s~eER~e~l~~~r 84 (276)
..++-.+-+-++|.||... .++..++.+-|.+++.+.. ...++.++=.+.++.++
T Consensus 98 ~~~i~~~g~~i~~~Gd~~~~~~~~~~~~~~~vDvl~~p~~g---------~~~~~~~~a~~~~~~l~ 155 (163)
T PF13483_consen 98 GYLIEVGGVTIYHAGDTGFPPDDEQLKQLGKVDVLFLPVGG---------PFTMGPEEAAELAERLK 155 (163)
T ss_dssp EEEEEETTEEEEE-TT--S---HHHHHHH-S-SEEEEE--T---------TTS--HHHHHHHHHHCT
T ss_pred EEEEEeCCCEEEEECCCccCCCHHHHhcccCCCEEEecCCC---------CcccCHHHHHHHHHHcC
Confidence 4456667888999999887 6666666556877777765 24567777666666553
No 156
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.78 E-value=50 Score=33.54 Aligned_cols=29 Identities=38% Similarity=0.683 Sum_probs=23.0
Q ss_pred eEEEEcc--cccCCChHHHH------HHHHHhhhCCC
Q 023877 21 VRVYADG--IYDLFHFGHAR------SLEQAKKSFPN 49 (276)
Q Consensus 21 ~~V~~~G--~FD~fH~GHl~------~L~qAk~l~~~ 49 (276)
+..|+.| +||-.|+||.| +|++..+..+.
T Consensus 23 V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy 59 (464)
T COG0215 23 VKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGY 59 (464)
T ss_pred EEEEecCCccCCccccccCcceehHHHHHHHHHHhCC
Confidence 7789988 79999999974 67777776534
No 157
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=20.73 E-value=4.5e+02 Score=24.27 Aligned_cols=55 Identities=20% Similarity=0.351 Sum_probs=34.5
Q ss_pred ceEee-CCCCc--chHHHHhhcCCCEEEeCCCcccccCCCCchHHHHHHhcC-eEEEccccC
Q 023877 87 DEVIP-DAPWV--VTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTD 144 (276)
Q Consensus 87 D~Vi~-~~p~~--~t~e~L~~~~~D~vv~G~d~y~~~~~~~~d~y~~lk~~G-~~~~~~rt~ 144 (276)
+.+|. ..|++ ....+++++++|++|.=+. +..+....+.+...+.| .++.+.|..
T Consensus 175 ~~iia~~gPfs~e~n~al~~~~~i~~lVtK~S---G~~Gg~~eKi~AA~~lgi~vivI~RP~ 233 (256)
T TIGR00715 175 DRIIAMRGPFSEELEKALLREYRIDAVVTKAS---GEQGGELEKVKAAEALGINVIRIARPQ 233 (256)
T ss_pred hcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCC---CCccchHHHHHHHHHcCCcEEEEeCCC
Confidence 34443 56765 5567899999999886431 11222344556677788 777777654
No 158
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.63 E-value=1e+02 Score=28.44 Aligned_cols=61 Identities=26% Similarity=0.374 Sum_probs=41.4
Q ss_pred EEEcccccC-CChHHHHHHHHHhhhCCCCeEEEEEcCChhhh--c--cC-CC------CCCCHHHHHHHHHhc
Q 023877 23 VYADGIYDL-FHFGHARSLEQAKKSFPNTYLLVGCCNDETTH--K--FK-GK------TVMTEDERYESLRHC 83 (276)
Q Consensus 23 V~~~G~FD~-fH~GHl~~L~qAk~l~~~d~LIVGV~sD~~~~--~--~K-gr------pi~s~eER~e~l~~~ 83 (276)
+..-|.|+| |..|-.++++.|++.+-+..+||-+...+... . .| |- .+-+..||++++.+.
T Consensus 98 IiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~ 170 (268)
T KOG4175|consen 98 IILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEA 170 (268)
T ss_pred eeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHh
Confidence 567789997 56899999999999987778888777654211 0 01 10 245566777766654
Done!