Query 023878
Match_columns 276
No_of_seqs 190 out of 1349
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:18:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b2h_A AMT-1, ammonium transpo 11.3 6.1E+02 0.021 22.7 7.2 19 5-23 269-287 (399)
2 3h3g_B Parathyroid hormone-rel 8.5 1.7E+02 0.0058 15.2 1.3 9 132-140 12-20 (24)
3 3d31_C Sulfate/molybdate ABC t 7.8 8.8E+02 0.03 19.8 6.9 22 165-186 99-120 (295)
4 2i68_A Protein EMRE; transmemb 7.0 7.1E+02 0.024 18.4 5.0 19 193-211 65-83 (137)
5 2jp3_A FXYD domain-containing 5.6 6.3E+02 0.022 16.5 3.4 14 67-80 23-36 (67)
6 2ls4_A High affinity copper up 7.4 1.4E+02 0.0048 15.9 0.0 14 194-207 7-20 (26)
7 2jo1_A Phospholemman; FXYD1, N 5.2 7E+02 0.024 16.5 3.4 17 65-81 20-36 (72)
8 3j1r_A Archaeal adhesion filam 5.0 4.7E+02 0.016 13.7 2.9 15 216-230 9-23 (26)
9 3n2f_G Na+/K+ ATPase gamma sub 4.8 5.3E+02 0.018 14.1 2.2 18 62-79 11-28 (31)
10 2dw3_A Intrinsic membrane prot 4.8 7.5E+02 0.026 16.6 3.4 21 252-272 36-56 (77)
No 1
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=11.30 E-value=6.1e+02 Score=22.67 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023878 5 VLVALGLSLVGGLSTSIGA 23 (276)
Q Consensus 5 ~~~~l~~~~~~~~~~~lG~ 23 (276)
.+.++..++++++.+..+.
T Consensus 269 p~~A~iiG~iag~i~~~~~ 287 (399)
T 2b2h_A 269 VKGAIVIGLVAGIVCYLAM 287 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667778888887777776
No 2
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=8.52 E-value=1.7e+02 Score=15.22 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=7.1
Q ss_pred HhhhhhHHH
Q 023878 132 SLHNFPEGM 140 (276)
Q Consensus 132 ~iHs~~eGl 140 (276)
.+||+.||+
T Consensus 12 wL~~ll~~v 20 (24)
T 3h3g_B 12 FLHHLIAEI 20 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 588888875
No 3
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=7.78 E-value=8.8e+02 Score=19.78 Aligned_cols=22 Identities=5% Similarity=-0.144 Sum_probs=9.9
Q ss_pred hHHHHHhHHHHHhccCCHHHHH
Q 023878 165 IPEGVAVALPVYFATQSKWQAF 186 (276)
Q Consensus 165 ipeg~a~~~~l~~~~~~~~~~~ 186 (276)
+.-|+..+..+.+...+.++.+
T Consensus 99 ~~lg~~~a~~l~~~~~~~~~~~ 120 (295)
T 3d31_C 99 LLLGAPTGYILARFDFPGKRLV 120 (295)
T ss_dssp HHHHHHHHHHHTTCCCTTHHHH
T ss_pred HHHHHHHHHHHHccCcchHHHH
Confidence 4445555555544333334433
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=6.98 E-value=7.1e+02 Score=18.36 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=8.2
Q ss_pred HhhHHHHHHHHHHHhcCCC
Q 023878 193 GFAEPLGVIIVAYLFPSSL 211 (276)
Q Consensus 193 ~l~~plG~~~g~~~~~~~~ 211 (276)
++...+.+++|++++.+..
T Consensus 65 ~l~pv~~~l~g~l~lgE~l 83 (137)
T 2i68_A 65 GVGIVLISLLSWGFFGQRL 83 (137)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 4444445555655654433
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=5.65 E-value=6.3e+02 Score=16.53 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 023878 67 LKGNLWFFSGVIFF 80 (276)
Q Consensus 67 ~~~~~~~~~G~~l~ 80 (276)
....+.|++|+++.
T Consensus 23 ifA~vLfi~GI~ii 36 (67)
T 2jp3_A 23 IFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 33444455554443
No 6
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=7.40 E-value=1.4e+02 Score=15.85 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHh
Q 023878 194 FAEPLGVIIVAYLF 207 (276)
Q Consensus 194 l~~plG~~~g~~~~ 207 (276)
++..+|+.+|.+++
T Consensus 7 iavvlGa~~Gyf~F 20 (26)
T 2ls4_A 7 IAVAAGAGTGYFLF 20 (26)
Confidence 55678888888776
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=5.18 E-value=7e+02 Score=16.51 Aligned_cols=17 Identities=18% Similarity=0.581 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q 023878 65 GFLKGNLWFFSGVIFFA 81 (276)
Q Consensus 65 ~~~~~~~~~~~G~~l~~ 81 (276)
|.....+.|++|+++.+
T Consensus 20 GLifA~vLfi~GI~iil 36 (72)
T 2jo1_A 20 GLVIAGILFILGILIVL 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 33444555666655543
No 8
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=4.96 E-value=4.7e+02 Score=13.70 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q 023878 216 LEGLLGSVGGVMAFL 230 (276)
Q Consensus 216 ~~~~l~~aaG~~lyv 230 (276)
+-++.+.+++.++|.
T Consensus 9 lLIviav~aaVllyl 23 (26)
T 3j1r_A 9 LLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667778877775
No 9
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=4.80 E-value=5.3e+02 Score=14.13 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=8.8
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 023878 62 NSIGFLKGNLWFFSGVIF 79 (276)
Q Consensus 62 ~~~~~~~~~~~~~~G~~l 79 (276)
+..+.....+.|+.|+++
T Consensus 11 rigGLi~a~vLfi~gi~i 28 (31)
T 3n2f_G 11 RNGGLIFAALAFIVGLII 28 (31)
T ss_dssp HHHHTTTHHHHHHHHHHH
T ss_pred hhcchhHHHHHHHHHHHH
Confidence 333444455555666543
No 10
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=4.79 E-value=7.5e+02 Score=16.62 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q 023878 252 VFVGMAFMSASLYFLEISLPA 272 (276)
Q Consensus 252 ~~~G~~lm~~~l~~~~~~~~~ 272 (276)
+++|..++.+.++++...+|+
T Consensus 36 ~f~~~~~~lv~l~~iG~~LPE 56 (77)
T 2dw3_A 36 VFFGTLLLIGFFRVVGRMLPI 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHhCch
Confidence 455555566666777777774
Done!