Query 023878
Match_columns 276
No_of_seqs 190 out of 1349
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 14:18:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023878.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023878hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 3.9 3.3E+02 0.024 14.2 3.7 19 37-55 6-24 (37)
2 d1v54d_ f.23.1.1 (D:) Mitochon 3.3 6.6E+02 0.048 17.1 4.3 36 227-262 56-92 (144)
3 d2axtm1 f.23.35.1 (M:1-36) Pho 2.8 4.3E+02 0.031 13.6 2.2 13 49-61 9-21 (36)
4 d1kqfb2 f.23.22.1 (B:246-290) 2.8 4.9E+02 0.036 14.2 3.1 18 216-233 18-35 (45)
5 d3d31c1 f.58.1.1 (C:13-260) Su 2.6 8.9E+02 0.065 16.9 5.6 26 161-188 150-175 (248)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.6 7.6E+02 0.055 18.3 4.4 20 212-231 26-45 (248)
7 d1ymga1 f.19.1.1 (A:6-239) Aqu 2.3 7.4E+02 0.054 17.8 3.8 14 220-233 39-52 (234)
8 d2np5a2 a.121.1.1 (A:78-195) T 2.2 4.5E+02 0.033 16.6 2.2 18 129-146 72-89 (118)
9 d2axtk1 f.23.36.1 (K:10-46) Ph 2.2 85 0.0062 16.6 -1.5 12 165-176 2-13 (37)
10 d1unld_ a.74.1.1 (D:) CDK5 act 2.0 4.8E+02 0.035 17.9 1.9 18 226-243 58-75 (150)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.85 E-value=3.3e+02 Score=14.22 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023878 37 LGLLQGFAAGLMLSISFLD 55 (276)
Q Consensus 37 l~~~~afaaGvml~~~~~~ 55 (276)
...+++|.+.++++=.++-
T Consensus 6 v~gl~~F~~~v~laQi~lV 24 (37)
T d1vf5c3 6 VKWMIAFICLVMLAQLMLI 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666666666655443
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.32 E-value=6.6e+02 Score=17.14 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=19.5
Q ss_pred HHHHHHHhhhhhhhhccChhHHHH-HHHHHHHHHHHH
Q 023878 227 MAFLTLHEMLPLAFDYAGQKQAVK-AVFVGMAFMSAS 262 (276)
Q Consensus 227 ~lyv~~~ellp~~~~~~~~~~~~~-~~~~G~~lm~~~ 262 (276)
.-++++.+-.||.....+.+..++ +.++|+.+..++
T Consensus 56 lYrisF~~t~ae~~~p~gewK~v~g~~~~~i~~s~~i 92 (144)
T d1v54d_ 56 LYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALL 92 (144)
T ss_dssp HHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHH
Confidence 346777777788766555544443 333444443333
No 3
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.80 E-value=4.3e+02 Score=13.57 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=6.8
Q ss_pred HHHHHHHhhHHHH
Q 023878 49 LSISFLDLAHNAI 61 (276)
Q Consensus 49 l~~~~~~llPea~ 61 (276)
++++++-++|.++
T Consensus 9 iAt~LFilvPt~F 21 (36)
T d2axtm1 9 IATALFVLVPSVF 21 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555666543
No 4
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=2.79 E-value=4.9e+02 Score=14.17 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023878 216 LEGLLGSVGGVMAFLTLH 233 (276)
Q Consensus 216 ~~~~l~~aaG~~lyv~~~ 233 (276)
.+...++++|.|=|+..-
T Consensus 18 ~~~~~~~~~~~fHYv~vG 35 (45)
T d1kqfb2 18 AGFIATFAGLIFHYIGIG 35 (45)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhheeC
Confidence 445567778888888654
No 5
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=2.63 E-value=8.9e+02 Score=16.88 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=16.3
Q ss_pred HHhhhHHHHHhHHHHHhccCCHHHHHHH
Q 023878 161 ALHNIPEGVAVALPVYFATQSKWQAFKL 188 (276)
Q Consensus 161 ~lH~ipeg~a~~~~l~~~~~~~~~~~~~ 188 (276)
.+.++|+++-.++.. .|.+++|.+.-
T Consensus 150 ~l~~i~~~~~eAA~~--lGas~~~~~~~ 175 (248)
T d3d31c1 150 GFKSVDPRLENAARS--LGAPLWKAFFF 175 (248)
T ss_dssp HHHHSCHHHHHHHHH--TTCCHHHHHHH
T ss_pred HHHhcchhHHHHHHh--hhccchhHHHH
Confidence 456677777666555 46677766653
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.60 E-value=7.6e+02 Score=18.29 Aligned_cols=20 Identities=0% Similarity=-0.124 Sum_probs=12.8
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 023878 212 SPEILEGLLGSVGGVMAFLT 231 (276)
Q Consensus 212 ~~~~~~~~l~~aaG~~lyv~ 231 (276)
.++....++.+......|+=
T Consensus 26 ~~~~~a~~~~~~~~~~~~vy 45 (248)
T d2r6gf1 26 GEYLFAITTLILSSAGLYIF 45 (248)
T ss_dssp GCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHheEEEE
Confidence 45666666666666666663
No 7
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.26 E-value=7.4e+02 Score=17.77 Aligned_cols=14 Identities=7% Similarity=-0.005 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 023878 220 LGSVGGVMAFLTLH 233 (276)
Q Consensus 220 l~~aaG~~lyv~~~ 233 (276)
.+++-|..+++.+.
T Consensus 39 ial~~G~~v~~~i~ 52 (234)
T d1ymga1 39 VALAFGLALATLVQ 52 (234)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 8
>d2np5a2 a.121.1.1 (A:78-195) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=2.23 E-value=4.5e+02 Score=16.60 Aligned_cols=18 Identities=17% Similarity=0.001 Sum_probs=13.6
Q ss_pred HHHHhhhhhHHHHHHhhh
Q 023878 129 VGISLHNFPEGMAVFLGS 146 (276)
Q Consensus 129 ~al~iHs~~eGlalG~~~ 146 (276)
.+..+|++.||+.+-...
T Consensus 72 ~A~~L~aliDGL~~~~l~ 89 (118)
T d2np5a2 72 RAALLLATVDGLALDAIG 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhc
Confidence 345689999999987654
No 9
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.21 E-value=85 Score=16.61 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=6.0
Q ss_pred hHHHHHhHHHHH
Q 023878 165 IPEGVAVALPVY 176 (276)
Q Consensus 165 ipeg~a~~~~l~ 176 (276)
+||+.+...++.
T Consensus 2 LPeay~~f~Piv 13 (37)
T d2axtk1 2 LPEAYAIFDPLV 13 (37)
T ss_dssp CCGGGGGCHHHH
T ss_pred cchhhhhhchHH
Confidence 455555554443
No 10
>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.98 E-value=4.8e+02 Score=17.89 Aligned_cols=18 Identities=6% Similarity=0.241 Sum_probs=13.8
Q ss_pred HHHHHHHHhhhhhhhhcc
Q 023878 226 VMAFLTLHEMLPLAFDYA 243 (276)
Q Consensus 226 ~~lyv~~~ellp~~~~~~ 243 (276)
.|+|+-.-|++|+.....
T Consensus 58 VFvYmL~Re~v~~~~~se 75 (150)
T d1unld_ 58 VFLYMLCRDVISSEVGSD 75 (150)
T ss_dssp HHHHHHHHHHSCTTCCCH
T ss_pred eehHHHHHHhcCccccCH
Confidence 588999999998765443
Done!