BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023879
(276 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana
GN=PGRL1A PE=1 SV=1
Length = 324
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/226 (77%), Positives = 208/226 (92%), Gaps = 1/226 (0%)
Query: 47 GRQFTVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQAL 106
G+ ++RRR F+LP+KATT+Q G V GD V DS +L YCSI+K EKK++GE+EQEFLQAL
Sbjct: 45 GKSISLRRRVFLLPAKATTEQSGPVGGDNV-DSNVLPYCSINKAEKKTIGEMEQEFLQAL 103
Query: 107 QAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYD 166
Q+FYY+GKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAYV+G PI++DEEYD
Sbjct: 104 QSFYYDGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYD 163
Query: 167 KLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATVVALGLFFFLDDIT 226
KLK KLK++GS+IV EGPRCSLRS+KVYSDL+VDY KMLLLNVPATVVALGLFFFLDDIT
Sbjct: 164 KLKLKLKIDGSDIVSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDIT 223
Query: 227 GFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILK 272
GFEITY++ELPEP+SFIFTWFAAVP+IVYL+ S+TKLI+++ LILK
Sbjct: 224 GFEITYIMELPEPYSFIFTWFAAVPVIVYLALSITKLIIKDFLILK 269
>sp|Q8GYC7|PGL1B_ARATH PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana
GN=PGRL1B PE=1 SV=1
Length = 313
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/239 (78%), Positives = 213/239 (89%), Gaps = 6/239 (2%)
Query: 39 SNSNTQF-----NGRQFTVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKK 93
S+S TQ +GR ++RRR +LP KA+TDQ GQV G+EV DSKIL YCSI+K EK+
Sbjct: 21 SSSRTQCPAPFTHGRSISLRRRLTLLPLKASTDQSGQVGGEEV-DSKILPYCSINKNEKR 79
Query: 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAY 153
++GE+EQEFLQA+Q+FYYEGKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAY
Sbjct: 80 TIGEMEQEFLQAMQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAY 139
Query: 154 VAGKPIMSDEEYDKLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPATV 213
V+G PI+SDEEYDKLK KLKM+GSEIV EGPRCSLRS+KVYSDL++DY KM LLNVPATV
Sbjct: 140 VSGNPILSDEEYDKLKMKLKMDGSEIVCEGPRCSLRSKKVYSDLAIDYFKMFLLNVPATV 199
Query: 214 VALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPLIVYLSQSLTKLIVRESLILK 272
VALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVP IVYL+ SLTKLI+++ LILK
Sbjct: 200 VALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPAIVYLALSLTKLILKDFLILK 258
>sp|Q09441|YP83_CAEEL ARID domain-containing protein C08B11.3 OS=Caenorhabditis elegans
GN=C08B11.3 PE=4 SV=1
Length = 1244
Score = 34.3 bits (77), Expect = 0.91, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 24 PAAALAPFPSSSRAHSNSNTQFNGRQFTVRRRSFVLPSK--ATTDQQGQVEGDEVVDSKI 81
P + P PS HS+ Q NG +F RR+ LP + A + G+ + +++ + I
Sbjct: 570 PHTNVPPSPSILAHHSSGLVQQNGMKFD--RRTGNLPVRPIAPSTNSGESQLEQLTEKWI 627
Query: 82 LQYCSIDKKEKKSLGELEQEFLQALQAFYY 111
Q C + GEL ++ L+ Y+
Sbjct: 628 RQNCVFEPAMSTPRGELYAAYVDDLRNLYH 657
>sp|A6LA55|DNLJ_PARD8 DNA ligase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
20701 / NCTC 11152) GN=ligA PE=3 SV=1
Length = 664
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 153 YVAGKPIMSDEEYDKLKQKLK-MEGSEIVVEGPRCSLRSRKVYSDLSVDYLKMLLLNVPA 211
YV P +SD E+DK+ ++L+ +E + P +R+V SDLS ++ + ++ P
Sbjct: 21 YVLSAPTISDFEFDKMMKELQELEAAHPEFADPDSP--TRRVGSDLSKEF-EQVVHKYP- 76
Query: 212 TVVALGLFFFLDDITGFEITYLLELPEPFSFI--FTWFAAVPLIVYLSQSLTKLIVR 266
+++LG + D+I F + L EPF + + + Y LT+ + R
Sbjct: 77 -MLSLGNTYSEDEIRDFYDRTVRSLNEPFEIVAELKYDGTSISLTYEKGRLTRAVTR 132
>sp|P55065|PLTP_MOUSE Phospholipid transfer protein OS=Mus musculus GN=Pltp PE=1 SV=1
Length = 493
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 33/230 (14%)
Query: 37 AHSNSNTQFNGRQFTVRRRSFVLPSKATTDQQGQVEGDEVV----------DSKILQYCS 86
++ N + +F G F ++ ++ LP++A + Q+E DE + DS + Y
Sbjct: 226 SNGNLDMEFRGAFFPLKEDNWSLPNRAV---EPQLEDDERMVYVAFSEFFFDSAMESYFQ 282
Query: 87 IDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSS---VVMLSSAE 143
+ +G+ L L Y G V+ + N +L E +S + S
Sbjct: 283 AGALQLTLVGDKVPSDLDMLLRATYFGSIVLLSPTVINSPLKLKLEATSPPRCTIKPSGT 342
Query: 144 QKFLEASMAYVAGKPIMSDEEYDK------LKQKLKMEGSEIVVEGPRCSLRSRKVYSDL 197
+ AS+ P++ + E K L KL + G + V + LR ++YS+
Sbjct: 343 TISITASVTITLAPPMLPEVELSKMIMEGRLSAKLTLRGKALRV---KLDLRRFQIYSNQ 399
Query: 198 S-VDYLKMLLLNVP-ATVVALGLFFFLDDIT--GFEITYLLELPEPFSFI 243
S ++ L ++ L P T++ +G+ L++ T G +I LPE +F+
Sbjct: 400 SALESLALIPLQAPLKTLLQIGVMPLLNERTWRGVQI----PLPEGINFV 445
>sp|A1AVV5|DNLJ_RUTMC DNA ligase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=ligA
PE=3 SV=1
Length = 614
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 17/18 (94%)
Query: 149 ASMAYVAGKPIMSDEEYD 166
A++AY AGKPI+SD++YD
Sbjct: 16 ANLAYRAGKPIISDQDYD 33
>sp|C6DJC3|LIGB_PECCP DNA ligase B OS=Pectobacterium carotovorum subsp. carotovorum
(strain PC1) GN=ligB PE=3 SV=1
Length = 562
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 88 DKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEEL 129
+ + KK + L Q+ Q +Y EGK+ ++++ +D L+E+L
Sbjct: 31 NTRSKKEIDALRQQLEQWDDVYYTEGKSPVADDVYDQLREQL 72
>sp|P0CR16|MRD1_CRYNJ Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=MRD1 PE=3 SV=1
Length = 769
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 43 TQFNGRQFTVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSL--GELEQ 100
T F GR VLP +A Q+G G VVD K+L + E KS + +Q
Sbjct: 285 TIFQGRLL------HVLPGRAKPGQEGAAAGSGVVDGKVLGKRDEGRGEVKSKVDAKRKQ 338
Query: 101 EFLQALQ--AFYYEGKAVMSN--EEFDNLKEELMW--EGSSVVMLSSAEQKFLEASMAY 153
E + + + Y AV ++ + K EL+ G+S V L+ AE +E + Y
Sbjct: 339 ESAKGVNWASLYMNSDAVAASVADRMGISKSELLNADSGNSAVKLALAETTVIEETKKY 397
>sp|P0CR17|MRD1_CRYNB Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=MRD1 PE=3 SV=1
Length = 769
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 43 TQFNGRQFTVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSL--GELEQ 100
T F GR VLP +A Q+G G VVD K+L + E KS + +Q
Sbjct: 285 TIFQGRLL------HVLPGRAKPGQEGAAAGSGVVDGKVLGKRDEGRGEVKSKVDAKRKQ 338
Query: 101 EFLQALQ--AFYYEGKAVMSN--EEFDNLKEELMW--EGSSVVMLSSAEQKFLEASMAY 153
E + + + Y AV ++ + K EL+ G+S V L+ AE +E + Y
Sbjct: 339 ESAKGVNWASLYMNSDAVAASVADRMGISKSELLNADSGNSAVKLALAETTVIEETKKY 397
>sp|Q9Z758|TIG_CHLPN Trigger factor OS=Chlamydia pneumoniae GN=tig PE=3 SV=1
Length = 442
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 57 FVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKS---LGELEQEFLQALQAFYYEG 113
F LP+ ++ + +++++++++QYCS ++ EK+ + E E++ +AL+ +
Sbjct: 310 FELPTSLLEERISLITREKLLNARLIQYCSDEELEKRKSELIKEAEEDATKALKLLFLTH 369
Query: 114 KAVMSNEEFDNLKEELMW 131
K + S+E+ +EEL +
Sbjct: 370 K-IFSDEKLTISREELQY 386
>sp|A8F541|DNLJ_THELT DNA ligase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385
/ TMO) GN=ligA PE=3 SV=1
Length = 678
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 153 YVAGKPIMSDEEYDKLKQKL 172
YV PI+SDEEYD+L Q+L
Sbjct: 26 YVLADPIISDEEYDRLMQEL 45
>sp|A7HJG6|DNLJ_FERNB DNA ligase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM
5306 / Rt17-B1) GN=ligA PE=3 SV=1
Length = 681
Score = 31.2 bits (69), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 153 YVAGKPIMSDEEYDKLKQKL 172
YV +P++SDEEYDKL ++L
Sbjct: 25 YVLAQPVISDEEYDKLMKRL 44
>sp|B7IDX6|DNLJ_THEAB DNA ligase OS=Thermosipho africanus (strain TCF52B) GN=ligA PE=3
SV=1
Length = 665
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 153 YVAGKPIMSDEEYDKLKQKL 172
YV P++SDEEYDKL +KL
Sbjct: 25 YVLADPVISDEEYDKLLKKL 44
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,661,219
Number of Sequences: 539616
Number of extensions: 3819226
Number of successful extensions: 12325
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 12299
Number of HSP's gapped (non-prelim): 46
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)