Query 023879
Match_columns 276
No_of_seqs 71 out of 73
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 14:19:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b04_A Protein (DNA ligase); D 93.1 0.1 3.5E-06 48.6 5.3 25 150-174 21-46 (318)
2 3jsl_A DNA ligase; NAD+-depend 91.7 0.15 5E-06 47.7 4.3 26 150-175 19-45 (318)
3 3uq8_A DNA ligase; adenylated 91.4 0.16 5.4E-06 47.4 4.3 27 149-175 16-43 (322)
4 1ta8_A DNA ligase, NAD-depende 90.5 0.22 7.4E-06 46.7 4.3 26 150-175 26-52 (332)
5 4glw_A DNA ligase; inhibitor, 90.4 0.044 1.5E-06 50.4 -0.4 36 95-130 5-40 (305)
6 1zau_A DNA ligase; AMP; HET: D 90.4 0.21 7E-06 46.7 4.1 26 150-175 28-54 (328)
7 3uq8_A DNA ligase; adenylated 90.1 0.24 8.3E-06 46.2 4.3 36 95-130 6-41 (322)
8 3jsl_A DNA ligase; NAD+-depend 89.5 0.29 1E-05 45.6 4.3 37 94-130 7-43 (318)
9 1zau_A DNA ligase; AMP; HET: D 89.4 0.31 1.1E-05 45.5 4.4 38 93-130 15-52 (328)
10 4glw_A DNA ligase; inhibitor, 89.3 0.069 2.4E-06 49.1 -0.0 25 150-174 16-41 (305)
11 1b04_A Protein (DNA ligase); D 89.1 0.34 1.2E-05 45.0 4.5 37 94-130 9-45 (318)
12 2owo_A DNA ligase; protein-DNA 89.0 0.39 1.3E-05 48.7 5.1 26 150-175 19-45 (671)
13 1ta8_A DNA ligase, NAD-depende 88.9 0.39 1.3E-05 45.0 4.7 37 94-130 14-50 (332)
14 4glx_A DNA ligase; inhibitor, 88.8 0.28 9.6E-06 49.0 3.9 37 94-130 7-43 (586)
15 4glx_A DNA ligase; inhibitor, 88.7 0.23 8E-06 49.5 3.3 25 150-174 19-44 (586)
16 1dgs_A DNA ligase; AMP complex 86.8 0.39 1.3E-05 48.7 3.6 27 150-176 21-48 (667)
17 2owo_A DNA ligase; protein-DNA 83.9 0.84 2.9E-05 46.3 4.3 37 94-130 7-43 (671)
18 3sgi_A DNA ligase; HET: DNA AM 81.7 0.24 8.3E-06 49.8 -0.5 26 150-175 28-54 (615)
19 1dgs_A DNA ligase; AMP complex 81.2 0.88 3E-05 46.1 3.3 37 94-130 9-45 (667)
20 3sgi_A DNA ligase; HET: DNA AM 74.8 0.67 2.3E-05 46.7 0.3 39 94-132 16-55 (615)
21 3vc8_A RNA-directed RNA polyme 59.6 28 0.00095 27.7 6.6 67 112-190 12-90 (94)
22 3gzf_A Replicase polyprotein 1 59.2 26 0.0009 28.0 6.5 67 112-190 17-94 (96)
23 3c1l_A Putative antioxidant de 40.0 37 0.0013 27.4 4.7 50 116-170 98-147 (188)
24 2pfx_A Uncharacterized peroxid 34.7 40 0.0014 27.3 4.2 50 116-170 101-150 (191)
25 3m1m_A ORF904; primase, polyme 32.3 16 0.00055 34.7 1.5 44 152-204 234-277 (335)
26 3rmt_A 3-phosphoshikimate 1-ca 32.0 47 0.0016 31.7 4.7 51 142-192 318-377 (455)
27 3g5o_A Uncharacterized protein 29.8 48 0.0016 25.7 3.7 48 116-172 46-93 (108)
28 2prr_A Alkylhydroperoxidase AH 29.5 45 0.0015 27.2 3.6 75 91-170 67-151 (197)
29 2oyo_A Uncharacterized peroxid 28.6 58 0.002 26.6 4.1 75 91-170 71-155 (196)
30 1q7z_A 5-methyltetrahydrofolat 25.2 1.1E+02 0.0037 30.0 6.1 66 119-184 369-439 (566)
31 2imp_A Lactaldehyde dehydrogen 22.9 2.5E+02 0.0085 26.3 7.9 68 117-184 261-356 (479)
32 1rf6_A 5-enolpyruvylshikimate- 22.8 62 0.0021 30.0 3.6 66 142-207 312-390 (427)
33 1ub0_A THID, phosphomethylpyri 22.4 2.2E+02 0.0077 23.3 6.7 52 123-182 121-173 (258)
34 3lns_A Benzaldehyde dehydrogen 21.6 1.3E+02 0.0043 28.2 5.5 68 116-183 245-331 (457)
35 1jxh_A Phosphomethylpyrimidine 21.5 3E+02 0.01 23.3 7.5 53 123-183 145-199 (288)
36 1wnd_A Putative betaine aldehy 21.3 2.7E+02 0.0091 26.5 7.8 68 117-184 277-372 (495)
37 1a4s_A ALDH, betaine aldehyde 21.3 2.9E+02 0.0098 26.3 8.0 68 117-184 273-367 (503)
38 3jz4_A Succinate-semialdehyde 20.4 2.7E+02 0.0093 26.1 7.6 50 135-184 293-358 (481)
39 3ros_A NAD-dependent aldehyde 20.3 3.2E+02 0.011 25.9 8.1 69 116-184 240-335 (484)
No 1
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=93.14 E-value=0.1 Score=48.59 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=21.5
Q ss_pred HHhhh-cCCCCCCHHHHHHHHHHHHh
Q 023879 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (276)
Q Consensus 150 ~~aY~-~GkPimsDeeFD~LK~kLk~ 174 (276)
-.+|| .|+|+|+|+|||+|..+|+.
T Consensus 21 ~~~YY~~d~p~IsD~eYD~L~~eL~~ 46 (318)
T 1b04_A 21 GYEYYVLDRPSVPDAEYDRLMQELIA 46 (318)
T ss_dssp HHHHHTTCSCCSSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 44665 79999999999999999875
No 2
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=91.66 E-value=0.15 Score=47.65 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=21.6
Q ss_pred HHhhh-cCCCCCCHHHHHHHHHHHHhh
Q 023879 150 SMAYV-AGKPIMSDEEYDKLKQKLKME 175 (276)
Q Consensus 150 ~~aY~-~GkPimsDeeFD~LK~kLk~~ 175 (276)
-.+|| .|+|+|||+|||+|..+|+..
T Consensus 19 ~~~YY~~d~p~IsD~eYD~L~~eL~~l 45 (318)
T 3jsl_A 19 SYEYYVEDNPSVPDSEYDKLLHELIKI 45 (318)
T ss_dssp HHHHHTSCCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHH
Confidence 44666 599999999999999998754
No 3
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=91.40 E-value=0.16 Score=47.43 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=22.5
Q ss_pred HHHhhhc-CCCCCCHHHHHHHHHHHHhh
Q 023879 149 ASMAYVA-GKPIMSDEEYDKLKQKLKME 175 (276)
Q Consensus 149 A~~aY~~-GkPimsDeeFD~LK~kLk~~ 175 (276)
+-.+||. |+|+|||+|||+|..+|+..
T Consensus 16 ~~~~YY~~d~p~IsD~eYD~L~~eL~~l 43 (322)
T 3uq8_A 16 YEYEYHVLDNPSVPDSEYDRLFHQLKAL 43 (322)
T ss_dssp HHHHHHTSSCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 3557775 99999999999999998764
No 4
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=90.49 E-value=0.22 Score=46.70 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.2
Q ss_pred HHhhh-cCCCCCCHHHHHHHHHHHHhh
Q 023879 150 SMAYV-AGKPIMSDEEYDKLKQKLKME 175 (276)
Q Consensus 150 ~~aY~-~GkPimsDeeFD~LK~kLk~~ 175 (276)
-.+|| .|+|+|+|+|||+|..+|+..
T Consensus 26 ~~~YY~~d~p~IsD~eYD~L~~eL~~l 52 (332)
T 1ta8_A 26 SHEYYVKDQPSVEDYVYDRLYKELVDI 52 (332)
T ss_dssp HHHHHTSSCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 44665 799999999999999999864
No 5
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=90.45 E-value=0.044 Score=50.37 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=4.2
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHHhHHHHhh
Q 023879 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (276)
Q Consensus 95 lge~E~~fl~Al~sfY~~gk~~~sdeEfd~LkEeL~ 130 (276)
+.++..+--++-.+||..|.|++||+|||.|.++|.
T Consensus 5 i~~L~~~i~~~~~~YY~~~~p~IsD~eYD~L~~eL~ 40 (305)
T 4glw_A 5 MNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELV 40 (305)
T ss_dssp HHC-----------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 334444444566788999999999999999998875
No 6
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=90.39 E-value=0.21 Score=46.72 Aligned_cols=26 Identities=35% Similarity=0.646 Sum_probs=22.2
Q ss_pred HHhhh-cCCCCCCHHHHHHHHHHHHhh
Q 023879 150 SMAYV-AGKPIMSDEEYDKLKQKLKME 175 (276)
Q Consensus 150 ~~aY~-~GkPimsDeeFD~LK~kLk~~ 175 (276)
-.+|| .|+|+|+|+|||+|..+|+..
T Consensus 28 ~~~YY~~d~p~IsD~eYD~L~~eL~~l 54 (328)
T 1zau_A 28 QFRYYVRDAPIISDAEFDELLRRLEAL 54 (328)
T ss_dssp HHHHTTTCCCSSCTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 34665 699999999999999999865
No 7
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=90.09 E-value=0.24 Score=46.17 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHhhhcCccccChHHHHhHHHHhh
Q 023879 95 LGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (276)
Q Consensus 95 lge~E~~fl~Al~sfY~~gk~~~sdeEfd~LkEeL~ 130 (276)
+.++..+--++-.+||..+.|++||+|||.|.+||.
T Consensus 6 i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 41 (322)
T 3uq8_A 6 LDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLK 41 (322)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 445555566667788989999999999999988763
No 8
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=89.49 E-value=0.29 Score=45.59 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHHHHhhhcCccccChHHHHhHHHHhh
Q 023879 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (276)
Q Consensus 94 slge~E~~fl~Al~sfY~~gk~~~sdeEfd~LkEeL~ 130 (276)
.+.++..+--++-.+||..+.|++||+|||.|.+||.
T Consensus 7 ~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 43 (318)
T 3jsl_A 7 RVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELI 43 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 4555555566667788889999999999999988764
No 9
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=89.40 E-value=0.31 Score=45.51 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=31.0
Q ss_pred cchhHHHHHHHHHHHHhhhcCccccChHHHHhHHHHhh
Q 023879 93 KSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (276)
Q Consensus 93 ~slge~E~~fl~Al~sfY~~gk~~~sdeEfd~LkEeL~ 130 (276)
.-+.++..+--++-.+||..+.|++||+|||.|.++|.
T Consensus 15 ~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 52 (328)
T 1zau_A 15 RQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLE 52 (328)
T ss_dssp TTHHHHHHHHHHHHHHHTTTCCCSSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 34566666666667788999999999999999999975
No 10
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=89.35 E-value=0.069 Score=49.08 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=3.9
Q ss_pred HHhhh-cCCCCCCHHHHHHHHHHHHh
Q 023879 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (276)
Q Consensus 150 ~~aY~-~GkPimsDeeFD~LK~kLk~ 174 (276)
-.+|| .|+|+|||+|||+|..+|+.
T Consensus 16 ~~~YY~~~~p~IsD~eYD~L~~eL~~ 41 (305)
T 4glw_A 16 ATEYYTSDNPSVSDSEYDRLYRELVE 41 (305)
T ss_dssp ---------------------CHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 44676 69999999999999998875
No 11
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=89.13 E-value=0.34 Score=45.04 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=29.8
Q ss_pred chhHHHHHHHHHHHHhhhcCccccChHHHHhHHHHhh
Q 023879 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (276)
Q Consensus 94 slge~E~~fl~Al~sfY~~gk~~~sdeEfd~LkEeL~ 130 (276)
-+.++..+--++-.+||..+.|++||+|||.|.++|.
T Consensus 9 ~~~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 45 (318)
T 1b04_A 9 RAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELI 45 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 3555555555666788999999999999999999975
No 12
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=88.99 E-value=0.39 Score=48.70 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=21.9
Q ss_pred HHhhh-cCCCCCCHHHHHHHHHHHHhh
Q 023879 150 SMAYV-AGKPIMSDEEYDKLKQKLKME 175 (276)
Q Consensus 150 ~~aY~-~GkPimsDeeFD~LK~kLk~~ 175 (276)
-.+|| .++|+|+|+|||+|..+|+..
T Consensus 19 ~~~YY~~d~p~isD~eYD~L~~eL~~l 45 (671)
T 2owo_A 19 EYLYHVMDAPEIPDAEYDRLMRELREL 45 (671)
T ss_dssp HHHHHHTTCSSBCCTHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 44655 699999999999999998763
No 13
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=88.89 E-value=0.39 Score=44.96 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=29.8
Q ss_pred chhHHHHHHHHHHHHhhhcCccccChHHHHhHHHHhh
Q 023879 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (276)
Q Consensus 94 slge~E~~fl~Al~sfY~~gk~~~sdeEfd~LkEeL~ 130 (276)
-+.++..+--.+-.+||..+.|++||+|||.|.++|.
T Consensus 14 ~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~ 50 (332)
T 1ta8_A 14 RAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELV 50 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4555555556666788899999999999999999975
No 14
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=88.84 E-value=0.28 Score=48.99 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHHHHhhhcCccccChHHHHhHHHHhh
Q 023879 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (276)
Q Consensus 94 slge~E~~fl~Al~sfY~~gk~~~sdeEfd~LkEeL~ 130 (276)
.+.++..+--++-.+||..+.|++||+|||.|.+||.
T Consensus 7 ~i~~L~~~i~~~~~~Yy~~~~p~IsD~eYD~L~~eL~ 43 (586)
T 4glx_A 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELR 43 (586)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 4555556666667789999999999999999998874
No 15
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=88.74 E-value=0.23 Score=49.54 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=21.6
Q ss_pred HHhhh-cCCCCCCHHHHHHHHHHHHh
Q 023879 150 SMAYV-AGKPIMSDEEYDKLKQKLKM 174 (276)
Q Consensus 150 ~~aY~-~GkPimsDeeFD~LK~kLk~ 174 (276)
-.+|| .|+|+|||+|||+|..+|+.
T Consensus 19 ~~~Yy~~~~p~IsD~eYD~L~~eL~~ 44 (586)
T 4glx_A 19 EYLYHVMDAPEIPDAEYDRLMRELRE 44 (586)
T ss_dssp HHHHHHTTCSSBCCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 45676 69999999999999999875
No 16
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=86.81 E-value=0.39 Score=48.69 Aligned_cols=27 Identities=37% Similarity=0.567 Sum_probs=22.8
Q ss_pred HHhhh-cCCCCCCHHHHHHHHHHHHhhC
Q 023879 150 SMAYV-AGKPIMSDEEYDKLKQKLKMEG 176 (276)
Q Consensus 150 ~~aY~-~GkPimsDeeFD~LK~kLk~~G 176 (276)
-.+|| .++|+|+|+|||+|..+|+..-
T Consensus 21 ~~~YY~~d~p~isD~eYD~l~~eL~~lE 48 (667)
T 1dgs_A 21 NYRYYVLADPEISDAEYDRLLRELKELE 48 (667)
T ss_dssp HHHHHTTCCCCSCSSSSHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 44666 7999999999999999998654
No 17
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=83.86 E-value=0.84 Score=46.34 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=29.8
Q ss_pred chhHHHHHHHHHHHHhhhcCccccChHHHHhHHHHhh
Q 023879 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (276)
Q Consensus 94 slge~E~~fl~Al~sfY~~gk~~~sdeEfd~LkEeL~ 130 (276)
-+.++..+--++-.+||..+.|++||+|||.|.++|.
T Consensus 7 ~~~~L~~~l~~~~~~YY~~d~p~isD~eYD~L~~eL~ 43 (671)
T 2owo_A 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELR 43 (671)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 3455555556667789999999999999999999875
No 18
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=81.70 E-value=0.24 Score=49.83 Aligned_cols=26 Identities=35% Similarity=0.646 Sum_probs=22.1
Q ss_pred HHhhh-cCCCCCCHHHHHHHHHHHHhh
Q 023879 150 SMAYV-AGKPIMSDEEYDKLKQKLKME 175 (276)
Q Consensus 150 ~~aY~-~GkPimsDeeFD~LK~kLk~~ 175 (276)
-.+|| .|+|+|||+|||+|..+|+..
T Consensus 28 ~~~YY~~d~p~IsD~eYD~L~~eL~~l 54 (615)
T 3sgi_A 28 QFRYYVRDAPIISDAEFDELLRRLEAL 54 (615)
T ss_dssp HHHHHHHSCCCSSCCSSCSSSSHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHH
Confidence 45776 799999999999999988754
No 19
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=81.25 E-value=0.88 Score=46.14 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHHHHhhhcCccccChHHHHhHHHHhh
Q 023879 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM 130 (276)
Q Consensus 94 slge~E~~fl~Al~sfY~~gk~~~sdeEfd~LkEeL~ 130 (276)
-+.++..+--++-.+||..+.|++||.|||.|.+||.
T Consensus 9 ~~~~L~~~l~~~~~~YY~~d~p~isD~eYD~l~~eL~ 45 (667)
T 1dgs_A 9 RINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELK 45 (667)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCSCSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 3445555555666789999999999999999999875
No 20
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=74.82 E-value=0.67 Score=46.69 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHHHHhhhcCccccChHHHHhHHHHhh-hc
Q 023879 94 SLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELM-WE 132 (276)
Q Consensus 94 slge~E~~fl~Al~sfY~~gk~~~sdeEfd~LkEeL~-we 132 (276)
.+.++..+--++-.+||..+.|++||+|||.|.+||. ||
T Consensus 16 ~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE 55 (615)
T 3sgi_A 16 QWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALE 55 (615)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCSSCCSSCSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence 4555555555666788889999999999999988764 43
No 21
>3vc8_A RNA-directed RNA polymerase; NEW fold, HOST membrane, multi-PASS membrane protein, cytopl hydrolase, viral protein; 2.00A {Murine hepatitis virus} PDB: 3vcb_A
Probab=59.56 E-value=28 Score=27.74 Aligned_cols=67 Identities=21% Similarity=0.466 Sum_probs=46.0
Q ss_pred cCccccChHHHHhHHHHhhhcCCeeEEeChhh-HHHHHH--HHhhhcCCCCCCHHHHHHH------HH--HHH-hhCCce
Q 023879 112 EGKAVMSNEEFDNLKEELMWEGSSVVMLSSAE-QKFLEA--SMAYVAGKPIMSDEEYDKL------KQ--KLK-MEGSEI 179 (276)
Q Consensus 112 ~gk~~~sdeEfd~LkEeL~weGSsvv~L~~~E-q~fLEA--~~aY~~GkPimsDeeFD~L------K~--kLk-~~GS~V 179 (276)
.+.++++++.|+.|+.++ +.+. +++|.. ...||+|. |++++|..- |+ .-+ ..|.+|
T Consensus 12 ~~TFvId~~~Y~kL~nsi----------s~~~~~~Yla~yNKYKYySGs--~~~adYr~Ac~ahLAkAl~~fs~~~g~dv 79 (94)
T 3vc8_A 12 LTTFMITKESYCKLKNSV----------SDVAFNRYLSLYNKYRYFSGK--MDTAAYREAACSQLAKAMETFNHNNGNDV 79 (94)
T ss_dssp TSCEEECHHHHHHHHHHS----------CHHHHHHHHHTHHHHHTCCSC--CCHHHHHHHHHHHHHHHHHHHHHHCSCCE
T ss_pred hceEEeccHHHHHHHhhc----------CHHHHHHHHHHHHhhccccCC--cchHHHHHHHHHHHHHHHHHhhhcCCCce
Confidence 467899999999999982 2222 455554 55699996 899999752 22 233 568999
Q ss_pred eeecCceeecC
Q 023879 180 VVEGPRCSLRS 190 (276)
Q Consensus 180 vvk~PrCslr~ 190 (276)
.-.-|+||+-+
T Consensus 80 LYtPP~~Sv~s 90 (94)
T 3vc8_A 80 LYQPPTASVTT 90 (94)
T ss_dssp EECCSCC----
T ss_pred eeCCCcceeeh
Confidence 99999999864
No 22
>3gzf_A Replicase polyprotein 1AB; FCOV, NSP4, viral protein; 2.76A {Feline coronavirus}
Probab=59.21 E-value=26 Score=27.96 Aligned_cols=67 Identities=18% Similarity=0.359 Sum_probs=49.2
Q ss_pred cCccccChHHHHhHHHHhhhcCCeeEEeChhh-HHHHHH--HHhhhcCCCCCCHHHHHHH------H--HHHHhhCCcee
Q 023879 112 EGKAVMSNEEFDNLKEELMWEGSSVVMLSSAE-QKFLEA--SMAYVAGKPIMSDEEYDKL------K--QKLKMEGSEIV 180 (276)
Q Consensus 112 ~gk~~~sdeEfd~LkEeL~weGSsvv~L~~~E-q~fLEA--~~aY~~GkPimsDeeFD~L------K--~kLk~~GS~Vv 180 (276)
.+.++++++.|..|+.+ ++.+. +++|.. ...||+|. |++++|..- | ..-+..|.+|.
T Consensus 17 ~~TFvId~~~Y~kL~n~----------is~~~~~~Yla~yNKYKYySGs--~~~adYr~Ac~AhLakAl~~fs~~g~d~L 84 (96)
T 3gzf_A 17 MGTFVIDMRSYETLVNS----------TSLDRIKSYANSFNKYKYYTGS--MGEADYRMACYAHLGKALMDYSVSRNDKL 84 (96)
T ss_dssp HSCEEECHHHHHHHHTT----------TTHHHHHHHHHTHHHHHSCCSC--CCHHHHHHHHHHHHHHHHHHHHHSCCCEE
T ss_pred cceEEEccHHHHHHHhh----------cCHHHHHHHHHHHhhhccccCC--cchHHHHHHHHHHHHHHHHHHhccCCcee
Confidence 35789999999999977 33232 455554 55699996 899999752 1 23456789999
Q ss_pred eecCceeecC
Q 023879 181 VEGPRCSLRS 190 (276)
Q Consensus 181 vk~PrCslr~ 190 (276)
-.-|+||+-+
T Consensus 85 YtPP~~Sv~S 94 (96)
T 3gzf_A 85 YTPPTVSVNS 94 (96)
T ss_dssp ECCCEEEEEC
T ss_pred eCCCcccccC
Confidence 9999999865
No 23
>3c1l_A Putative antioxidant defense protein MLR4105; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Mesorhizobium loti}
Probab=39.99 E-value=37 Score=27.42 Aligned_cols=50 Identities=12% Similarity=0.097 Sum_probs=37.5
Q ss_pred ccChHHHHhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q 023879 116 VMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQ 170 (276)
Q Consensus 116 ~~sdeEfd~LkEeL~weGSsvv~L~~~Eq~fLEA~~aY~~GkPimsDeeFD~LK~ 170 (276)
-+++|+-+.|.. .|.++ ..++.|+.-|+...+......-++|+.|++|+.
T Consensus 98 G~~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l~~ 147 (188)
T 3c1l_A 98 SGDPALGEMLVM--NFRAA---DLSPRQTAMLEFAVKLTEEPAKIVEADRAALRK 147 (188)
T ss_dssp HSCHHHHHHHHH--CGGGG---CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 567777777764 47777 368999988888777665444599999999864
No 24
>2pfx_A Uncharacterized peroxidase-related protein; YP_614459.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE PG4; 1.70A {Silicibacter SP} SCOP: a.152.1.3
Probab=34.75 E-value=40 Score=27.32 Aligned_cols=50 Identities=8% Similarity=0.078 Sum_probs=36.8
Q ss_pred ccChHHHHhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q 023879 116 VMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQ 170 (276)
Q Consensus 116 ~~sdeEfd~LkEeL~weGSsvv~L~~~Eq~fLEA~~aY~~GkPimsDeeFD~LK~ 170 (276)
-+++|+-+.|.. .|.++ .+++.|+.-|+...+......-++|+.|++|+.
T Consensus 101 G~~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l~~ 150 (191)
T 2pfx_A 101 SGDPQLGEMLVM--NYRVA---PLDARQRVMLDFAAKMTRASAEIEEADREVLRS 150 (191)
T ss_dssp HTCHHHHHHHHH--CGGGS---CCCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 567787777764 37777 478999888887776555433599999999864
No 25
>3m1m_A ORF904; primase, polymerase, replication; 1.85A {Sulfolobus islandicus}
Probab=32.30 E-value=16 Score=34.69 Aligned_cols=44 Identities=23% Similarity=0.493 Sum_probs=27.7
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhhCCceeeecCceeecCCceeecchhhHHHH
Q 023879 152 AYVAGKPIMSDEEYDKLKQKLKMEGSEIVVEGPRCSLRSRKVYSDLSVDYLKM 204 (276)
Q Consensus 152 aY~~GkPimsDeeFD~LK~kLk~~GS~Vvvk~PrCslr~~~vySDae~D~lKm 204 (276)
.|-+||++ |++|.++=++=.+..+.+--| -++.|+|...|.+|=
T Consensus 234 k~~~~k~~------~~~~~~~c~~~~~~~~~~~~c---~~k~y~~~~~drsrg 277 (335)
T 3m1m_A 234 KRDSGKPV------EKIKEEICTKSPPKLIKEIIC---ENKTYADVNIDRSRG 277 (335)
T ss_dssp HHCCCCCH------HHHHHHHHTSCCCHHHHHHHT---SCCCTTTTTCCHHHH
T ss_pred hhcCCCcH------HHHHHHHHHhhhhhceeeeee---cCCchhhcccccccC
Confidence 36677765 566666654444443333334 467899999998873
No 26
>3rmt_A 3-phosphoshikimate 1-carboxyvinyltransferase 1; structural genomics, protein structure initiative; 2.80A {Bacillus halodurans}
Probab=32.00 E-value=47 Score=31.67 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=42.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCH---------HHHHHHHHHHHhhCCceeeecCceeecCCc
Q 023879 142 AEQKFLEASMAYVAGKPIMSD---------EEYDKLKQKLKMEGSEIVVEGPRCSLRSRK 192 (276)
Q Consensus 142 ~Eq~fLEA~~aY~~GkPimsD---------eeFD~LK~kLk~~GS~Vvvk~PrCslr~~~ 192 (276)
|+|-.|-++.++.+|.-.+.+ +-|..+..+|++.|.+|...+-...++|.+
T Consensus 318 D~~p~lavla~~a~G~s~I~~~~~LrvkEsdRi~a~~~eL~kmGa~i~~~~d~l~I~G~~ 377 (455)
T 3rmt_A 318 DEIPIIAVLATQASGRTVIKDAEELKVKETNRIDTVVSELTKLGASIHATDDGMIIEGPT 377 (455)
T ss_dssp GGHHHHHHHHHTSBSCEEEEC-----CHHHHHHHHHHHHHHHTTCCEEEETTEEEECSCC
T ss_pred HHHHHHHHHHHhCCCcEEEEccccccccchhHHHHHHHHHHHCCCEEEEECCEEEEECCC
Confidence 778899999999999999997 346667789999999999887777777653
No 27
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=29.83 E-value=48 Score=25.68 Aligned_cols=48 Identities=19% Similarity=0.484 Sum_probs=31.9
Q ss_pred ccChHHHHhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 023879 116 VMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKL 172 (276)
Q Consensus 116 ~~sdeEfd~LkEeL~weGSsvv~L~~~Eq~fLEA~~aY~~GkPimsDeeFD~LK~kL 172 (276)
+||-|+|+.|.|.+-.-.+. ..-+...+|...+..|+.+ .++.++.+|
T Consensus 46 l~s~e~ye~l~etl~LL~~~-----~~~~~L~~a~~~~~~G~~~----s~eev~~~l 93 (108)
T 3g5o_A 46 LVGADEWESLQETLYWLAQP-----GIRESIAEADADIASGRTY----GEDEIRAEF 93 (108)
T ss_dssp EEEHHHHHHHHHHHHHHTST-----THHHHHHHHHHHHHHTCEE----CHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHcCCCc----CHHHHHHHh
Confidence 67889999999886443321 1224556666679999986 455666666
No 28
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein; YP_296737.1, carboxymuconolactone decarboxylase family; HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Probab=29.48 E-value=45 Score=27.23 Aligned_cols=75 Identities=9% Similarity=0.085 Sum_probs=46.9
Q ss_pred cccchhHHHHHHHHHHHH---------hhhc-CccccChHHHHhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCCCCC
Q 023879 91 EKKSLGELEQEFLQALQA---------FYYE-GKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (276)
Q Consensus 91 ~~~slge~E~~fl~Al~s---------fY~~-gk~~~sdeEfd~LkEeL~weGSsvv~L~~~Eq~fLEA~~aY~~GkPim 160 (276)
+.-+..++|+.-+-..+. .... .+.-+++++-+.|... |.++ ..++.|+.-|+...+......-+
T Consensus 67 ~~L~~~~rELi~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~~--~~~~---~~~~~era~l~~a~~lt~~~~~v 141 (197)
T 2prr_A 67 GGLTKGEREMIVVATSAANQCLYCVVAHGAILRIYEKKPLVADQVAVN--YLKA---DIPPRQRAMLDFALKVCKASHEV 141 (197)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTHHHHHHHH--GGGS---SCCHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHh--hhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 344556666665554332 1111 1224677777777643 7777 36899998888877765433359
Q ss_pred CHHHHHHHHH
Q 023879 161 SDEEYDKLKQ 170 (276)
Q Consensus 161 sDeeFD~LK~ 170 (276)
+|+.|++|+.
T Consensus 142 ~d~~~~~l~~ 151 (197)
T 2prr_A 142 NEADFEALRE 151 (197)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHHH
Confidence 9999999864
No 29
>2oyo_A Uncharacterized peroxidase-related protein; YP_604910.1, uncharacterised peroxidase-related, uncharacter peroxidase-related; 1.51A {Deinococcus geothermalis} SCOP: a.152.1.3
Probab=28.58 E-value=58 Score=26.57 Aligned_cols=75 Identities=11% Similarity=0.052 Sum_probs=48.1
Q ss_pred cccchhHHHHHHHHHHHH---------hhhc-CccccChHHHHhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCCCCC
Q 023879 91 EKKSLGELEQEFLQALQA---------FYYE-GKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIM 160 (276)
Q Consensus 91 ~~~slge~E~~fl~Al~s---------fY~~-gk~~~sdeEfd~LkEeL~weGSsvv~L~~~Eq~fLEA~~aY~~GkPim 160 (276)
+.-+..++|+.-+-..+. .+.. .+.-+++++-+.|.. .|.++ ..++.|+.-|+...+......-+
T Consensus 71 ~~L~~~~rEli~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~--~~~~~---~~~~~e~a~l~~a~~lt~~~~~v 145 (196)
T 2oyo_A 71 GYLTNAERELVAVVVSGVNRCLYCAVSHGAALREFLGDPQKADAVAV--NWRHA---DLTEREQALAAYAEKLTRHPAEV 145 (196)
T ss_dssp CSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTCHHHHHHHHH--CGGGS---CCCHHHHHHHHHHHHHHHCGGGC
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHH--hhhcC---CCCHHHHHHHHHHHHHHhCcCCC
Confidence 344556666666655432 1111 122467777777754 37777 36899988888877766544459
Q ss_pred CHHHHHHHHH
Q 023879 161 SDEEYDKLKQ 170 (276)
Q Consensus 161 sDeeFD~LK~ 170 (276)
+|+.|++|+.
T Consensus 146 ~d~~~~~l~~ 155 (196)
T 2oyo_A 146 TAADLEPLRA 155 (196)
T ss_dssp CGGGGHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999998775
No 30
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=25.18 E-value=1.1e+02 Score=30.03 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=47.8
Q ss_pred hHHHHhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCCCCCCH-----HHHHHHHHHHHhhCCceeeecC
Q 023879 119 NEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSD-----EEYDKLKQKLKMEGSEIVVEGP 184 (276)
Q Consensus 119 deEfd~LkEeL~weGSsvv~L~~~Eq~fLEA~~aY~~GkPimsD-----eeFD~LK~kLk~~GS~Vvvk~P 184 (276)
.||+.++-..+.-+-.-.+.+-...-+-+||-..++.|++|+.| +.|+++-.-.+.+|..||+...
T Consensus 369 ~ee~~rvv~~i~~~~~vpisIDT~~~~v~eaal~~~~G~~iINdis~~~~~~~~~~~~~~~~g~~vV~m~~ 439 (566)
T 1q7z_A 369 VRYVEKIVQTLPYVSNVPLSLDIQNVDLTERALRAYPGRSLFNSAKVDEEELEMKINLLKKYGGTLIVLLM 439 (566)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEECCCHHHHHHHHHHCSSCCEEEEEESCHHHHHHHHHHHHHHCCEEEEESC
T ss_pred HHHHHHHHHHHHhhCCceEEEeCCCHHHHHHHHHhcCCCCEEEECCcchhhHHHHHHHHHHhCCeEEEEeC
Confidence 67777776666444344566666777778887766699999987 5566666667889999999753
No 31
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=22.90 E-value=2.5e+02 Score=26.34 Aligned_cols=68 Identities=16% Similarity=0.350 Sum_probs=47.4
Q ss_pred cChHHHHhHHHHhhh-----cC------CeeEEeChhhHHHHHHHHh----hhcCC----------CCCCHHHHHHHHHH
Q 023879 117 MSNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK----------PIMSDEEYDKLKQK 171 (276)
Q Consensus 117 ~sdeEfd~LkEeL~w-----eG------Ssvv~L~~~Eq~fLEA~~a----Y~~Gk----------PimsDeeFD~LK~k 171 (276)
+.|.+.|..=+.+.| .| +++++-...-.+|++++.. ++-|. |+++.+++++++.-
T Consensus 261 ~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~~gpli~~~~~~rv~~~ 340 (479)
T 2imp_A 261 MDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQK 340 (479)
T ss_dssp CTTSCHHHHHHHHHTTSSTTTTCCSSSCSEEEEEGGGHHHHHHHHHHHHHTCCBSCTTTCSSCSBCCCSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCcCcCCcEEEEehhhHHHHHHHHHHHHHhcccCCccccCCCccCCCcCHHHHHHHHHH
Confidence 456677777777777 34 4556666666788888654 34343 68899999999987
Q ss_pred HHh---hCCceeeecC
Q 023879 172 LKM---EGSEIVVEGP 184 (276)
Q Consensus 172 Lk~---~GS~Vvvk~P 184 (276)
+.. +|.+++.-|.
T Consensus 341 i~~a~~~Ga~~~~gG~ 356 (479)
T 2imp_A 341 VARAVEEGARVAFGGK 356 (479)
T ss_dssp HHHHHHTTCEEEECCC
T ss_pred HHHHHHCCCEEEECCc
Confidence 754 5888877554
No 32
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A*
Probab=22.77 E-value=62 Score=30.01 Aligned_cols=66 Identities=11% Similarity=0.152 Sum_probs=48.8
Q ss_pred hhHHHHHHHHhhhcCCCCCCH---------HHHHHHHHHHHhhCCceeeecCceeecCC-ce---eecchhhHHHHHhh
Q 023879 142 AEQKFLEASMAYVAGKPIMSD---------EEYDKLKQKLKMEGSEIVVEGPRCSLRSR-KV---YSDLSVDYLKMLLL 207 (276)
Q Consensus 142 ~Eq~fLEA~~aY~~GkPimsD---------eeFD~LK~kLk~~GS~Vvvk~PrCslr~~-~v---ySDae~D~lKm~lL 207 (276)
|+|-.|-++.++.+|.-.+.+ +=|..+..+|++.|.+|...+-...++|. ++ ..++-.|+=-..++
T Consensus 312 D~~p~l~~la~~a~G~s~i~~~~~lr~kEsdR~~~~~~eL~~lGa~i~~~~d~~~I~g~~~l~g~~v~s~~DhR~ama~ 390 (427)
T 1rf6_A 312 DELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMT 390 (427)
T ss_dssp GGHHHHHHHHHTSBEEEEECSCGGGGGSSSCTTHHHHHHHHTTTCCEEEETTEEEEEECCCCCCEEEECTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcEEEEcccccccchhHHHHHHHHHHHHCCCEEEEECCEEEEeCCCCCCCCeEECCccHHHHHHH
Confidence 899999999999999999998 44556778999999999987776666652 22 24555566433333
No 33
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2
Probab=22.40 E-value=2.2e+02 Score=23.27 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=34.6
Q ss_pred HhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhhCCc-eeee
Q 023879 123 DNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMEGSE-IVVE 182 (276)
Q Consensus 123 d~LkEeL~weGSsvv~L~~~Eq~fLEA~~aY~~GkPimsDeeFD~LK~kLk~~GS~-Vvvk 182 (276)
+.+++++ +....+++.+..|-+.|. |.++-++++..+.-.+|...|.+ |+++
T Consensus 121 ~~~~~~l-l~~~dil~pN~~E~~~L~-------g~~~~~~~~~~~~a~~l~~~g~~~vvvt 173 (258)
T 1ub0_A 121 AALKERL-FPLADLVTPNRLEAEALL-------GRPIRTLKEAEEAAKALLALGPKAVLLK 173 (258)
T ss_dssp HHHHHHT-GGGCSEECCBHHHHHHHH-------CSCCCSHHHHHHHHHHHHTTSCSCEEEE
T ss_pred HHHHHhh-cccCeEEeCCHHHHHHHh-------CCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 4555554 345678999998876653 56665666666666677778875 6665
No 34
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=21.58 E-value=1.3e+02 Score=28.16 Aligned_cols=68 Identities=18% Similarity=0.353 Sum_probs=43.3
Q ss_pred ccChHHHHhHHHHhhh-----cC------CeeEEeChhhHHHHHHHHhhhc---C-----CCCCCHHHHHHHHHHHHhhC
Q 023879 116 VMSNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMAYVA---G-----KPIMSDEEYDKLKQKLKMEG 176 (276)
Q Consensus 116 ~~sdeEfd~LkEeL~w-----eG------Ssvv~L~~~Eq~fLEA~~aY~~---G-----kPimsDeeFD~LK~kLk~~G 176 (276)
++.|.+.|.--+.+.| .| ++|++-.+.-.+|++++....+ + -|+++++++++++.-+...+
T Consensus 245 V~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~p~~~~~gpli~~~~~~rv~~~i~~a~ 324 (457)
T 3lns_A 245 VLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVKDALLERLVERVKTELPEINSTGKLVTERQVQRLVSLLEATQ 324 (457)
T ss_dssp ECTTCCHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGHHHHHHHHHHHHHHHCCSTTTTCCCSSHHHHHHHHHHHHHCC
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCCCccCCceEEEcHHHHHHHHHHHHHHHHhcCCCcccccCCCCHHHHHHHHHHHHhcC
Confidence 3456666666666665 44 3444545555677777554222 2 28999999999999998866
Q ss_pred Cceeeec
Q 023879 177 SEIVVEG 183 (276)
Q Consensus 177 S~Vvvk~ 183 (276)
-+++.-|
T Consensus 325 ~~~~~gg 331 (457)
T 3lns_A 325 GQVLVGS 331 (457)
T ss_dssp SEEEECC
T ss_pred CeEEeCC
Confidence 4554433
No 35
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=21.52 E-value=3e+02 Score=23.28 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=34.0
Q ss_pred HhHHHHhhhcCCeeEEeChhhHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHhhCCc-eeeec
Q 023879 123 DNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGK-PIMSDEEYDKLKQKLKMEGSE-IVVEG 183 (276)
Q Consensus 123 d~LkEeL~weGSsvv~L~~~Eq~fLEA~~aY~~Gk-PimsDeeFD~LK~kLk~~GS~-Vvvk~ 183 (276)
+.+++++ .....+++.+..|-+.|. |. ++-+.++..+.-.+|...|.+ |++++
T Consensus 145 ~~l~~~l-l~~~dil~pN~~Ea~~L~-------g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~ 199 (288)
T 1jxh_A 145 ETLRVRL-LPQVSLITPNLPEAAALL-------DAPHARTEQEMLAQGRALLAMGCEAVLMKG 199 (288)
T ss_dssp HHHHHHT-GGGCSEEECBHHHHHHHH-------TCCCCCSHHHHHHHHHHHHHTTCSEEEEBC
T ss_pred HHHHHHH-HhhCcEEcCCHHHHHHHc-------CCCCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 4466543 356679999999877663 55 555656666656677777765 55553
No 36
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=21.31 E-value=2.7e+02 Score=26.49 Aligned_cols=68 Identities=13% Similarity=0.280 Sum_probs=46.6
Q ss_pred cChHHHHhHHHHhhh-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CCCCHHHHHHHHHHH
Q 023879 117 MSNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKL 172 (276)
Q Consensus 117 ~sdeEfd~LkEeL~w-----eG------Ssvv~L~~~Eq~fLEA~~a----Y~~Gk---------PimsDeeFD~LK~kL 172 (276)
+.|.+.|..=+.+.| .| +++++-...-.+|++++.. ++-|. |+++..++++++.-+
T Consensus 277 ~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~g~p~~~~~~~Gpli~~~~~~rv~~~i 356 (495)
T 1wnd_A 277 FDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVGKAV 356 (495)
T ss_dssp CTTSCHHHHHHHHHHHTTGGGGCSTTCCCEEEEETTTHHHHHHHHHHHHHTCCBCCTTSTTCCBCCCSCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCCCCCCcEEEecchhHHHHHHHHHHHHHhccCCCCccCCCCccCCCCHHHHHHHHHHH
Confidence 346666666666666 33 4556666666778888654 44454 689999999999877
Q ss_pred Hh---hC-CceeeecC
Q 023879 173 KM---EG-SEIVVEGP 184 (276)
Q Consensus 173 k~---~G-S~Vvvk~P 184 (276)
.. +| .+++.-|.
T Consensus 357 ~~a~~~G~a~~~~gG~ 372 (495)
T 1wnd_A 357 EEAKATGHIKVITGGE 372 (495)
T ss_dssp HHHHHTSSCEEEECCS
T ss_pred HHHHhCCCeEEEECCc
Confidence 65 58 88877554
No 37
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=21.30 E-value=2.9e+02 Score=26.27 Aligned_cols=68 Identities=22% Similarity=0.390 Sum_probs=47.4
Q ss_pred cChHHHHhHHHHhhh-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CCCCHHHHHHHHHHH
Q 023879 117 MSNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQKL 172 (276)
Q Consensus 117 ~sdeEfd~LkEeL~w-----eG------Ssvv~L~~~Eq~fLEA~~a----Y~~Gk---------PimsDeeFD~LK~kL 172 (276)
+.|.+.|..=+.+.| .| +++++-...-.+|++++.. ++-|. |+++.+++++++.-+
T Consensus 273 ~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~rv~~~i 352 (503)
T 1a4s_A 273 FKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIMPQFLEEVVKRTKAIVVGDPLLTETRMGGLISKPQLDKVLGFV 352 (503)
T ss_dssp CTTSCHHHHHHHHHHTTCGGGGCCTTCCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEehHHHHHHHHHHHHHHHhcCCCCCcccCCccCCCcCHHHHHHHHHHH
Confidence 456677777777776 23 5566666666788888654 34454 689999999999887
Q ss_pred H---hhCCceeeecC
Q 023879 173 K---MEGSEIVVEGP 184 (276)
Q Consensus 173 k---~~GS~Vvvk~P 184 (276)
. .+|.+++.-|.
T Consensus 353 ~~a~~~Ga~~~~gG~ 367 (503)
T 1a4s_A 353 AQAKKEGARVLCGGE 367 (503)
T ss_dssp HHHHHHTCEEEECCS
T ss_pred HHHHHCCCEEEeCCc
Confidence 5 46888877554
No 38
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=20.43 E-value=2.7e+02 Score=26.11 Aligned_cols=50 Identities=16% Similarity=0.399 Sum_probs=34.1
Q ss_pred eeEEeChhhHHHHHHHHhhh----cCC---------CCCCHHHHHHHHHHHH---hhCCceeeecC
Q 023879 135 SVVMLSSAEQKFLEASMAYV----AGK---------PIMSDEEYDKLKQKLK---MEGSEIVVEGP 184 (276)
Q Consensus 135 svv~L~~~Eq~fLEA~~aY~----~Gk---------PimsDeeFD~LK~kLk---~~GS~Vvvk~P 184 (276)
+|++-...-.+|++++.... -|. |+++...+++++.-+. ..|.+++.-|.
T Consensus 293 rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~ 358 (481)
T 3jz4_A 293 RLYVQDGVYDRFAEKLQQAMSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGK 358 (481)
T ss_dssp EEEEEGGGHHHHHHHHHHHHTTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCS
T ss_pred EEEEeHHHHHHHHHHHHHHHHhccCCCCccCcCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCc
Confidence 44444444567777765533 343 7899999999998765 46888887653
No 39
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=20.29 E-value=3.2e+02 Score=25.85 Aligned_cols=69 Identities=22% Similarity=0.365 Sum_probs=47.7
Q ss_pred ccChHHHHhHHHHhhh-----cC------CeeEEeChhhHHHHHHHHh----hhcCC---------CCCCHHHHHHHHHH
Q 023879 116 VMSNEEFDNLKEELMW-----EG------SSVVMLSSAEQKFLEASMA----YVAGK---------PIMSDEEYDKLKQK 171 (276)
Q Consensus 116 ~~sdeEfd~LkEeL~w-----eG------Ssvv~L~~~Eq~fLEA~~a----Y~~Gk---------PimsDeeFD~LK~k 171 (276)
++.|.+.|.--+.+.| .| +++++-.+.-.+|++++.. ++-|. |+++.+++++++.-
T Consensus 240 V~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~rv~~~ 319 (484)
T 3ros_A 240 VLDDADPQVLRNVLNDARTYNDGQVCTSSKRIIVEKSRYDEVLHELKNVFSNLKAGDPLEADTTLPPMNSEKAKEKLEAQ 319 (484)
T ss_dssp ECTTCCHHHHHHHHTTTTTGGGGCCTTSCCEEEEEGGGHHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCCCccCCceEEEcHHHHHHHHHHHHHHHHhccCCCCCCCCCccCCCCCHHHHHHHHHH
Confidence 3457777777777777 33 4555555556778887554 44453 67999999999876
Q ss_pred HH---hhCCceeeecC
Q 023879 172 LK---MEGSEIVVEGP 184 (276)
Q Consensus 172 Lk---~~GS~Vvvk~P 184 (276)
+. .+|.+++.-|.
T Consensus 320 i~~a~~~Ga~v~~gG~ 335 (484)
T 3ros_A 320 VKEAIDAGAKVFYQYP 335 (484)
T ss_dssp HHHHHHTTCEEEEECC
T ss_pred HHHHHHcCCeEEecCC
Confidence 64 47888887664
Done!