Query 023880
Match_columns 276
No_of_seqs 188 out of 1506
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 14:20:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivx_A Cyclin-T2; transcriptio 100.0 1.6E-42 5.4E-47 307.1 25.1 205 2-210 33-243 (257)
2 3rgf_B Cyclin-C; protein kinas 100.0 1.4E-43 4.9E-48 318.5 15.6 199 2-209 45-244 (285)
3 2i53_A Cyclin K; cell cycle, t 100.0 1.6E-41 5.4E-46 300.6 23.2 198 2-212 43-256 (258)
4 2pk2_A Cyclin-T1, protein TAT; 100.0 2.7E-42 9.3E-47 318.9 15.7 207 2-212 40-252 (358)
5 1zp2_A RNA polymerase II holoe 100.0 1.2E-41 4.1E-46 297.8 14.7 194 2-211 30-224 (235)
6 1jkw_A Cyclin H; cell cycle, c 100.0 1.3E-37 4.3E-42 284.2 19.1 189 2-208 59-262 (323)
7 1c9b_A General transcription f 100.0 1.9E-35 6.5E-40 253.6 17.7 183 2-207 7-189 (207)
8 2b9r_A Human cyclin B1; cell c 100.0 3.1E-35 1.1E-39 262.1 16.0 205 2-231 40-252 (269)
9 2cch_B Cyclin A2, cyclin-A; co 100.0 4.1E-35 1.4E-39 260.0 14.6 205 2-231 41-253 (260)
10 3g33_B CCND3 protein; Ser/Thr 100.0 1E-34 3.5E-39 263.2 15.5 190 2-211 73-271 (306)
11 2w96_A G1/S-specific cyclin-D1 100.0 6.4E-34 2.2E-38 253.8 17.9 191 2-212 59-262 (271)
12 1g3n_C V-cyclin; cyclin-depend 100.0 3.9E-34 1.3E-38 253.3 15.7 191 2-212 53-253 (257)
13 2f2c_A Cyclin homolog, V-cycli 100.0 2.7E-32 9.4E-37 241.1 16.0 184 3-210 55-251 (254)
14 1ais_B TFB TFIIB, protein (tra 100.0 1.5E-30 5.3E-35 221.8 18.5 182 2-206 11-194 (200)
15 1f5q_B Gamma herpesvirus cycli 100.0 2.9E-30 1E-34 227.7 15.6 188 3-213 52-248 (252)
16 1w98_B Cyclin E, G1/S-specific 100.0 4.6E-30 1.6E-34 230.2 15.5 178 2-207 52-242 (283)
17 3k7a_M Transcription initiatio 99.9 1.1E-28 3.8E-33 227.0 4.1 182 2-206 128-321 (345)
18 4bbr_M Transcription initiatio 99.9 1.8E-22 6.3E-27 185.3 8.3 183 1-206 127-321 (345)
19 1ais_B TFB TFIIB, protein (tra 98.3 2.6E-06 9E-11 71.5 9.9 89 4-114 109-197 (200)
20 2pmi_B PHO85 cyclin PHO80, ami 98.0 6E-05 2E-09 66.8 11.1 103 3-128 77-183 (293)
21 1c9b_A General transcription f 97.9 5.5E-05 1.9E-09 63.7 8.9 68 4-71 103-170 (207)
22 4bbr_M Transcription initiatio 96.7 0.0039 1.3E-07 56.7 8.1 93 115-208 125-217 (345)
23 3k7a_M Transcription initiatio 96.4 0.00048 1.6E-08 62.7 0.0 68 4-71 236-303 (345)
24 1zp2_A RNA polymerase II holoe 96.2 0.031 1.1E-06 47.6 10.0 87 120-206 32-126 (235)
25 3rgf_B Cyclin-C; protein kinas 95.7 0.062 2.1E-06 47.2 10.0 86 121-206 48-149 (285)
26 1jkw_A Cyclin H; cell cycle, c 95.2 0.13 4.5E-06 46.0 10.6 85 121-206 62-155 (323)
27 2b9r_A Human cyclin B1; cell c 95.0 0.11 3.9E-06 45.1 9.2 86 121-206 43-130 (269)
28 2ivx_A Cyclin-T2; transcriptio 94.6 0.11 3.9E-06 44.6 8.1 57 120-176 35-91 (257)
29 2cch_B Cyclin A2, cyclin-A; co 94.4 0.12 4E-06 44.7 7.8 86 121-206 44-131 (260)
30 2i53_A Cyclin K; cell cycle, t 94.4 0.13 4.6E-06 44.1 8.1 56 121-176 46-101 (258)
31 1g3n_C V-cyclin; cyclin-depend 94.0 0.18 6.2E-06 43.4 8.2 86 121-206 56-143 (257)
32 3g33_B CCND3 protein; Ser/Thr 93.9 0.22 7.6E-06 44.1 8.7 86 121-206 76-163 (306)
33 2f2c_A Cyclin homolog, V-cycli 93.9 0.27 9.2E-06 42.2 9.0 86 121-206 57-144 (254)
34 2pk2_A Cyclin-T1, protein TAT; 93.7 0.15 5.1E-06 46.4 7.3 57 120-176 42-98 (358)
35 1w98_B Cyclin E, G1/S-specific 93.5 0.3 1E-05 42.7 8.8 86 121-206 55-143 (283)
36 2w96_A G1/S-specific cyclin-D1 93.4 0.31 1.1E-05 42.2 8.7 86 121-206 62-149 (271)
37 3m03_A ORC6, origin recognitio 92.7 0.37 1.3E-05 35.3 6.8 60 7-67 6-70 (95)
38 3h4c_A Transcription factor TF 91.3 0.5 1.7E-05 39.4 6.6 63 5-67 17-82 (260)
39 1f5q_B Gamma herpesvirus cycli 90.0 0.95 3.3E-05 38.9 7.8 86 121-206 54-141 (252)
40 2r7g_A PP110, retinoblastoma-a 84.3 2.5 8.6E-05 38.1 7.3 68 5-72 220-290 (347)
41 4ell_A Retinoblastoma-associat 83.4 3.1 0.00011 38.4 7.6 69 4-72 283-354 (411)
42 2pmi_B PHO85 cyclin PHO80, ami 81.5 7.1 0.00024 34.2 8.9 88 119-206 77-167 (293)
43 3m03_A ORC6, origin recognitio 80.8 7.9 0.00027 28.1 7.5 79 126-207 9-93 (95)
44 2r7g_A PP110, retinoblastoma-a 79.7 22 0.00076 31.9 11.7 83 94-176 166-278 (347)
45 4elj_A Retinoblastoma-associat 77.6 6.6 0.00023 38.3 8.1 70 4-73 528-600 (656)
46 2qdj_A Retinoblastoma-associat 75.0 7.7 0.00026 34.2 7.2 64 7-70 6-73 (304)
47 4elj_A Retinoblastoma-associat 68.6 17 0.00059 35.4 8.6 64 6-70 7-75 (656)
48 3h4c_A Transcription factor TF 53.7 48 0.0016 27.6 7.4 57 123-179 19-78 (260)
49 4ell_A Retinoblastoma-associat 44.0 42 0.0014 30.8 6.3 53 124-176 287-342 (411)
50 2ju4_A GMP-PDE gamma, retinal 43.1 21 0.00072 24.6 3.1 28 246-273 6-33 (87)
51 2qdj_A Retinoblastoma-associat 36.9 64 0.0022 28.3 6.1 51 123-173 6-59 (304)
52 2wh0_Q Pkcev3, protein kinase 29.8 43 0.0015 18.2 2.4 18 96-113 12-29 (31)
No 1
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=1.6e-42 Score=307.11 Aligned_cols=205 Identities=27% Similarity=0.438 Sum_probs=188.4
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHHHhhhhccCCC
Q 023880 2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLP 81 (276)
Q Consensus 2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~i~~~~~~~p 81 (276)
++++||.++|.+|+|++.|+++|++||||||.++++.++++++||+||||||||+||.|++++|++.+++.+.++..
T Consensus 33 ~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~--- 109 (257)
T 2ivx_A 33 QAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLE--- 109 (257)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTS---
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCC---
Confidence 57999999999999999999999999999999999999999999999999999999999999999999988765432
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCHHHHHHHHHHHHhhhc-ccccccCChHH
Q 023880 82 IEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLR-TTLCVRFKSEV 160 (276)
Q Consensus 82 ~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~~l~~~A~~~l~ds~~-t~l~l~~~P~~ 160 (276)
.+++..++.|...+++|++||+.||++|||++.++||+.||.+|++.++.++++.+.||++++++++ +++|+.|+|+.
T Consensus 110 -~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~ 188 (257)
T 2ivx_A 110 -PLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTV 188 (257)
T ss_dssp -CCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHH
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHH
Confidence 1235567889988999999999999999999999999999999999999999999999999999995 88999999999
Q ss_pred HHHHHHHHHHHHcCCCCCC---Cccccccc--cCCHHHHHHHHHHHHHhhcCCCC
Q 023880 161 VACGVVYAAARRFQIPLPE---NPPWWKAF--DAEKSGIDEVCRVLAHLYSLPKA 210 (276)
Q Consensus 161 IAaAaI~lA~~~~~~~lp~---~~~W~~~~--~~~~~~v~~i~~~ll~ly~~~k~ 210 (276)
||+||||+|++.+|.++|. +++||..| ++++++|++++.+|+++|.+...
T Consensus 189 IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~~~~~~~ 243 (257)
T 2ivx_A 189 IACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKTPN 243 (257)
T ss_dssp HHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHHHHhChH
Confidence 9999999999999988764 45799988 57999999999999999987544
No 2
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-43 Score=318.47 Aligned_cols=199 Identities=26% Similarity=0.344 Sum_probs=180.0
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccCCc-CHHHHHHHHHHhhhhccCC
Q 023880 2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPR-KARQVIIVFHRMECRREGL 80 (276)
Q Consensus 2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~~~-~l~dii~v~~~i~~~~~~~ 80 (276)
++++||.++|.+|+|++.|++||++||||||.++++.++++++||+||||||||+||+++ .++|++.+++.+.+.+...
T Consensus 45 ~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~ 124 (285)
T 3rgf_B 45 FFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSY 124 (285)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccc
Confidence 479999999999999999999999999999999999999999999999999999999987 5899999887664332111
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHH
Q 023880 81 PIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEV 160 (276)
Q Consensus 81 p~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~ 160 (276)
..++.|...+++|+++|+.||++|||++.++|||+||.+|++.++.++++.+.||++++|++.+++|++|+|+.
T Consensus 125 ------~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~ 198 (285)
T 3rgf_B 125 ------AFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFM 198 (285)
T ss_dssp ------TCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHH
T ss_pred ------cCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHH
Confidence 12233445689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhhcCCC
Q 023880 161 VACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSLPK 209 (276)
Q Consensus 161 IAaAaI~lA~~~~~~~lp~~~~W~~~~~~~~~~v~~i~~~ll~ly~~~k 209 (276)
||+||||+|++.++.+. ++||..||+++++|.+|+.+|+++|..++
T Consensus 199 IAaAaiylA~~~~~~~~---~~W~~~~~~~~~~l~~~~~~il~ly~~~~ 244 (285)
T 3rgf_B 199 IALACLHVACVVQQKDA---RQWFAELSVDMEKILEIIRVILKLYEQWK 244 (285)
T ss_dssp HHHHHHHHHHHHTTCCC---HHHHHTSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCh---hhHHHHHCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999998754 47999999999999999999999998643
No 3
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.6e-41 Score=300.63 Aligned_cols=198 Identities=31% Similarity=0.533 Sum_probs=180.8
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHHHhhhhccCCC
Q 023880 2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLP 81 (276)
Q Consensus 2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~i~~~~~~~p 81 (276)
++++||.++|.+|+|++.|+++|++||||||.++++++++++++|+||||||||+||.+++++|++.+++.+..
T Consensus 43 ~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~------ 116 (258)
T 2i53_A 43 EGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLN------ 116 (258)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSC------
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhc------
Confidence 47899999999999999999999999999999999999999999999999999999999999999998775421
Q ss_pred ccccccchHHHH----HHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCH----HHHHHHHHHHHhhhccccc
Q 023880 82 IEHLDLFSKKFS----ELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPL----ELRQEAWNLANDSLRTTLC 153 (276)
Q Consensus 82 ~~~~d~~~~~y~----~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~----~l~~~A~~~l~ds~~t~l~ 153 (276)
++.|. ..+++|++||+.||++|||++.+++|++||.+|++.++.+. ++.+.||++++++++++.|
T Consensus 117 -------~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~ 189 (258)
T 2i53_A 117 -------DVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLS 189 (258)
T ss_dssp -------HHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGG
T ss_pred -------hhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCch
Confidence 12221 24889999999999999999999999999999999999876 6999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHHHcCCCCC------CCccccccc--cCCHHHHHHHHHHHHHhhcCCCCcc
Q 023880 154 VRFKSEVVACGVVYAAARRFQIPLP------ENPPWWKAF--DAEKSGIDEVCRVLAHLYSLPKAKY 212 (276)
Q Consensus 154 l~~~P~~IAaAaI~lA~~~~~~~lp------~~~~W~~~~--~~~~~~v~~i~~~ll~ly~~~k~~~ 212 (276)
+.|+|+.||+||||+|++.+|.++| ..++||..| |+++++|.+++++|+++|..+++++
T Consensus 190 l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~~~~~~ 256 (258)
T 2i53_A 190 LQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQQM 256 (258)
T ss_dssp GTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSSSCCCC
T ss_pred hccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhcccccC
Confidence 9999999999999999999988654 245799998 8999999999999999999988776
No 4
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=2.7e-42 Score=318.91 Aligned_cols=207 Identities=27% Similarity=0.420 Sum_probs=188.9
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHHHhhhhccCCC
Q 023880 2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLP 81 (276)
Q Consensus 2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~i~~~~~~~p 81 (276)
++++||.++|.+|+|++.|+++|++||||||.++++.++++++|++||||||||+||.+++++|++.+++.+.++..
T Consensus 40 ~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~--- 116 (358)
T 2pk2_A 40 QAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQE--- 116 (358)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSS---
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcccc---
Confidence 57999999999999999999999999999999999999999999999999999999999999999998887765432
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCHHHHHHHHHHHHhhhc-ccccccCChHH
Q 023880 82 IEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLR-TTLCVRFKSEV 160 (276)
Q Consensus 82 ~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~~l~~~A~~~l~ds~~-t~l~l~~~P~~ 160 (276)
..++..++.|+..+++|+.||+.||++|+|++.++||+.||.+|++.++.++++.+.||++++|+++ +++|+.|+|+.
T Consensus 117 -~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~ 195 (358)
T 2pk2_A 117 -SLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPV 195 (358)
T ss_dssp -CCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHH
T ss_pred -ccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHH
Confidence 1234567788888999999999999999999999999999999999999999999999999999995 88999999999
Q ss_pred HHHHHHHHHHHHcCCCCCC---Ccccccccc--CCHHHHHHHHHHHHHhhcCCCCcc
Q 023880 161 VACGVVYAAARRFQIPLPE---NPPWWKAFD--AEKSGIDEVCRVLAHLYSLPKAKY 212 (276)
Q Consensus 161 IAaAaI~lA~~~~~~~lp~---~~~W~~~~~--~~~~~v~~i~~~ll~ly~~~k~~~ 212 (276)
||+||||+|++.++.++|. +.+||..|+ +++++|++++.+|+++|.....+.
T Consensus 196 IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il~~y~~~~~~L 252 (358)
T 2pk2_A 196 VACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEKTPNRL 252 (358)
T ss_dssp HTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHHHHHHhCcccc
Confidence 9999999999999988764 457999984 799999999999999998776543
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-41 Score=297.81 Aligned_cols=194 Identities=18% Similarity=0.235 Sum_probs=177.4
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhcccccc-chHHHHHHHHHHHhhhcccCCcCHHHHHHHHHHhhhhccCC
Q 023880 2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFAR-FDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGL 80 (276)
Q Consensus 2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~-~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~i~~~~~~~ 80 (276)
++++||.++|.+|+||+.|+++|++||||||.++++++ +++++|++||||||||+||++++++|++.+++++..
T Consensus 30 ~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~----- 104 (235)
T 1zp2_A 30 YQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWS----- 104 (235)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHcc-----
Confidence 57899999999999999999999999999999999999 999999999999999999999999999998875421
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHH
Q 023880 81 PIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEV 160 (276)
Q Consensus 81 p~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~ 160 (276)
+.|...+++|+++|+.||++|||++.+++|++||.+|++.++.++++.+.||++++|++++++|+.|+|+.
T Consensus 105 ---------~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~ 175 (235)
T 1zp2_A 105 ---------LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQ 175 (235)
T ss_dssp ---------CSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHH
T ss_pred ---------chhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHH
Confidence 11223488999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhhcCCCCc
Q 023880 161 VACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSLPKAK 211 (276)
Q Consensus 161 IAaAaI~lA~~~~~~~lp~~~~W~~~~~~~~~~v~~i~~~ll~ly~~~k~~ 211 (276)
||+||||+|++..|.++|...+||. |+++++|.+|+.+|+++|...+..
T Consensus 176 IAaAai~lA~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~i~~ly~~~~~~ 224 (235)
T 1zp2_A 176 LAYAALLISCCNDENTIPKLLDLIK--STDAFKVILCVQRIISIYYFEDIE 224 (235)
T ss_dssp HHHHHHHHHHTSCTTHHHHHHHHCC--HHHHHHHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHHhcCCCCCCCcchhh--cCCHHHHHHHHHHHHHHHhhCCcC
Confidence 9999999999998876654456886 999999999999999999987653
No 6
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=1.3e-37 Score=284.24 Aligned_cols=189 Identities=19% Similarity=0.281 Sum_probs=168.0
Q ss_pred chhHHHHHHHHHhC--CCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHHHhhhhccC
Q 023880 2 QYAGSIVSFICVVY--RPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREG 79 (276)
Q Consensus 2 ~~~~~I~~v~~~L~--L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~i~~~~~~ 79 (276)
+||+||.++|.+|+ ||+.|++||++||||||.++++.++++++||+||||||||+||+++++++++.++.
T Consensus 59 ~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~-------- 130 (323)
T 1jkw_A 59 YYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLR-------- 130 (323)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSS--------
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhc--------
Confidence 58999999999999 99999999999999999999999999999999999999999999999999875321
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHc-------CCCHHHHHHHHHHHHhhhcccc
Q 023880 80 LPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATL-------ETPLELRQEAWNLANDSLRTTL 152 (276)
Q Consensus 80 ~p~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l-------~~~~~l~~~A~~~l~ds~~t~l 152 (276)
.++......+++|+.+|+.||++|||++.++|||+||.+|+..+ +.++.+.+.||++++|++.+++
T Consensus 131 -------~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~ 203 (323)
T 1jkw_A 131 -------ESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDA 203 (323)
T ss_dssp -------SCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTH
T ss_pred -------cChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccH
Confidence 01122345689999999999999999999999999999999765 2346789999999999999999
Q ss_pred cccCChHHHHHHHHHHHHHHcCCCCCCCcccccc-cc-----CCHHHHHHHHHHHHHhhcCC
Q 023880 153 CVRFKSEVVACGVVYAAARRFQIPLPENPPWWKA-FD-----AEKSGIDEVCRVLAHLYSLP 208 (276)
Q Consensus 153 ~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~-~~-----~~~~~v~~i~~~ll~ly~~~ 208 (276)
|+.|+|++||+||||+|+..+|.++| .|+.. ++ .+.+++.++++.|..+|...
T Consensus 204 ~l~~~Ps~IAaAai~lA~~~~~~~~~---~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~ 262 (323)
T 1jkw_A 204 YLLYTPSQIALTAILSSASRAGITME---SYLSESLMLKENRTCLSQLLDIMKSMRNLVKKY 262 (323)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHSCCCT---THHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHHHcCCChH---HHHHHHhccccccccHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999998776 38884 34 37899999999999999874
No 7
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=100.00 E-value=1.9e-35 Score=253.61 Aligned_cols=183 Identities=17% Similarity=0.216 Sum_probs=170.1
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHHHhhhhccCCC
Q 023880 2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLP 81 (276)
Q Consensus 2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~i~~~~~~~p 81 (276)
+++++|.++|.+|+||+.|++||++|||||+.++++++++++.|++||||+|||.||.|++++|++.+++ +
T Consensus 7 ~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~-~-------- 77 (207)
T 1c9b_A 7 NAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-I-------- 77 (207)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSS-S--------
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHC-C--------
Confidence 6789999999999999999999999999999999999999999999999999999999999999987654 1
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHHH
Q 023880 82 IEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVV 161 (276)
Q Consensus 82 ~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~I 161 (276)
.+.+|.++|+.||++|||++.+.+|+.||.+|++.+++++++.+.||.+++++..++++++|+|+.|
T Consensus 78 -------------~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~I 144 (207)
T 1c9b_A 78 -------------SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISV 144 (207)
T ss_dssp -------------CHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHH
T ss_pred -------------CHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHH
Confidence 2567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhhcC
Q 023880 162 ACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSL 207 (276)
Q Consensus 162 AaAaI~lA~~~~~~~lp~~~~W~~~~~~~~~~v~~i~~~ll~ly~~ 207 (276)
|+||||+|++.+|.+.+. ..|+...|+++.+|..++++|.+....
T Consensus 145 AaAaiylA~~~~~~~~~~-~~i~~~~~v~~~tI~~~~~~l~~~l~~ 189 (207)
T 1c9b_A 145 AAAAIYMASQASAEKRTQ-KEIGDIAGVADVTIRQSYRLIYPRAPD 189 (207)
T ss_dssp HHHHHHHHHHTSSSCCCH-HHHHHHHTCCHHHHHHHHHHHGGGHHH
T ss_pred HHHHHHHHHHHHCCCCCH-HHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999987653 469999999999999999998876543
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=3.1e-35 Score=262.09 Aligned_cols=205 Identities=18% Similarity=0.179 Sum_probs=183.2
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccC-CcCHHHHHHHHHHhhhhccCC
Q 023880 2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEES-PRKARQVIIVFHRMECRREGL 80 (276)
Q Consensus 2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~-~~~l~dii~v~~~i~~~~~~~ 80 (276)
..++||.++|.+++|++.|.++|++|||||+.++++.+.+.+++|+||||||||+||. +++++|++.+++.
T Consensus 40 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~-------- 111 (269)
T 2b9r_A 40 ILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDN-------- 111 (269)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCS--------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcC--------
Confidence 4689999999999999999999999999999999999999999999999999999998 7899999876432
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHH
Q 023880 81 PIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEV 160 (276)
Q Consensus 81 p~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~ 160 (276)
.| .+++|++||+.||++|||++.+++|++||.+|++.++.+.++.+.|++++++++.+..++.|+|+.
T Consensus 112 ----------~~--~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~ 179 (269)
T 2b9r_A 112 ----------TY--TKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQ 179 (269)
T ss_dssp ----------SS--CHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTH
T ss_pred ----------CC--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHH
Confidence 12 488999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCccccccc----cCCHHHHHHHHHHHHHhhcCCC---CccccccCCCCcccccCCCCCC
Q 023880 161 VACGVVYAAARRFQIPLPENPPWWKAF----DAEKSGIDEVCRVLAHLYSLPK---AKYIPVCKDGTSFTFSSKTVDS 231 (276)
Q Consensus 161 IAaAaI~lA~~~~~~~lp~~~~W~~~~----~~~~~~v~~i~~~ll~ly~~~k---~~~~~~~~~~~~~~~~~~~~~~ 231 (276)
||+||||+|+..+|.+ .|+..+ |+++++|.++++.|.+++...+ ..+..+.+++.+-.+...|..+
T Consensus 180 iAaAai~lA~~~l~~~-----~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~~~~~~ai~~Ky~~~~~~~vs~~~ 252 (269)
T 2b9r_A 180 IAAGAFSLALKILDNG-----EWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMTVKNKYATSKHAKISTLP 252 (269)
T ss_dssp HHHHHHHHHHHHHTCC-----CSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTSCCSCCHHHHHTTSGGGTTGGGSS
T ss_pred HHHHHHHHHHHHhCCC-----CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHhcchhhCcccCCC
Confidence 9999999999999864 477654 8999999999999999886432 4667788888876677777665
No 9
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=4.1e-35 Score=260.05 Aligned_cols=205 Identities=15% Similarity=0.169 Sum_probs=179.6
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccC-CcCHHHHHHHHHHhhhhccCC
Q 023880 2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEES-PRKARQVIIVFHRMECRREGL 80 (276)
Q Consensus 2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~-~~~l~dii~v~~~i~~~~~~~ 80 (276)
..++||.++|..++|++.|.++|++|+|||+.++++.+.+.+++|+||||||||+||. +++++|++.+++.
T Consensus 41 ~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~-------- 112 (260)
T 2cch_B 41 ILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDD-------- 112 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcC--------
Confidence 3689999999999999999999999999999999999999999999999999999998 8999999876532
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCH-HHHHHHHHHHHhhhcccc-cccCCh
Q 023880 81 PIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPL-ELRQEAWNLANDSLRTTL-CVRFKS 158 (276)
Q Consensus 81 p~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~-~l~~~A~~~l~ds~~t~l-~l~~~P 158 (276)
.| .+++|++||+.||++|||++.+++|++||.+|++.++.+. ++.+.||+++++++.+.. ++.|+|
T Consensus 113 ----------~~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~P 180 (260)
T 2cch_B 113 ----------TY--TKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLP 180 (260)
T ss_dssp ----------SS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCH
T ss_pred ----------Cc--CHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCH
Confidence 12 4889999999999999999999999999999999999765 899999999999987776 999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCccccccc----cCCHHHHHHHHHHHHHhhcCCC-CccccccCCCCcccccCCCCCC
Q 023880 159 EVVACGVVYAAARRFQIPLPENPPWWKAF----DAEKSGIDEVCRVLAHLYSLPK-AKYIPVCKDGTSFTFSSKTVDS 231 (276)
Q Consensus 159 ~~IAaAaI~lA~~~~~~~lp~~~~W~~~~----~~~~~~v~~i~~~ll~ly~~~k-~~~~~~~~~~~~~~~~~~~~~~ 231 (276)
+.||+||||+|...++. +.|+..+ |+++++|.+|++.|.++|.+.. .+...+.+++.+-.+...|..+
T Consensus 181 s~iAaAai~lA~~~~~~-----~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~~i~~Ky~~~~~~~vs~~~ 253 (260)
T 2cch_B 181 SVIAGAAFHLALYTVTG-----QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLN 253 (260)
T ss_dssp HHHHHHHHHHHHHHHHS-----CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCCHHHHHHTSGGGTTGGGSC
T ss_pred HHHHHHHHHHHHHHhCC-----CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHCcccccceeCCC
Confidence 99999999999998875 3588765 8999999999999999997543 3445666666655566666555
No 10
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=263.16 Aligned_cols=190 Identities=13% Similarity=0.113 Sum_probs=165.5
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccC-CcCHHHHHHHHHHhhhhccCC
Q 023880 2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEES-PRKARQVIIVFHRMECRREGL 80 (276)
Q Consensus 2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~-~~~l~dii~v~~~i~~~~~~~ 80 (276)
..++||.++|..|+|++.|.++|++|||||+.++++.+.+++++|+||||||||+||. ++++++++.+++.
T Consensus 73 ~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~-------- 144 (306)
T 3g33_B 73 MLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDH-------- 144 (306)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTT--------
T ss_pred HHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhcc--------
Confidence 3689999999999999999999999999999999999999999999999999999996 6789998876542
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCH----HHHHHHHHHHHhhhcccccccC
Q 023880 81 PIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPL----ELRQEAWNLANDSLRTTLCVRF 156 (276)
Q Consensus 81 p~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~----~l~~~A~~~l~ds~~t~l~l~~ 156 (276)
.| .+++|++||+.||++|+|++.+++|++||.+|++.++.+. .+.+.|++++++++.+..++.|
T Consensus 145 ----------~~--~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~ 212 (306)
T 3g33_B 145 ----------AV--SPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMY 212 (306)
T ss_dssp ----------SS--CHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTS
T ss_pred ----------Cc--cHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 11 4789999999999999999999999999999999988653 3678899999999999999999
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCccccccc----cCCHHHHHHHHHHHHHhhcCCCCc
Q 023880 157 KSEVVACGVVYAAARRFQIPLPENPPWWKAF----DAEKSGIDEVCRVLAHLYSLPKAK 211 (276)
Q Consensus 157 ~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~~----~~~~~~v~~i~~~ll~ly~~~k~~ 211 (276)
+|++||+|||++|...++....+...|+..+ |++.++|.+|+..|+++|.+.-.+
T Consensus 213 ~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l~~ 271 (306)
T 3g33_B 213 PPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLRE 271 (306)
T ss_dssp CHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999885433334566654 899999999999999999985433
No 11
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=6.4e-34 Score=253.78 Aligned_cols=191 Identities=16% Similarity=0.220 Sum_probs=168.5
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccC-CcCHHHHHHHHHHhhhhccCC
Q 023880 2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEES-PRKARQVIIVFHRMECRREGL 80 (276)
Q Consensus 2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~-~~~l~dii~v~~~i~~~~~~~ 80 (276)
+.++||.+++.++++++.|+++|++|+|||+.+.++.+.+.+++|+||||||||+||. |+++++++.+++.
T Consensus 59 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~-------- 130 (271)
T 2w96_A 59 IVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDN-------- 130 (271)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTT--------
T ss_pred HHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcC--------
Confidence 4689999999999999999999999999999999999999999999999999999998 9999998865431
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCHHH----HHHHHHHHHhhhcccccccC
Q 023880 81 PIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLEL----RQEAWNLANDSLRTTLCVRF 156 (276)
Q Consensus 81 p~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~~l----~~~A~~~l~ds~~t~l~l~~ 156 (276)
.| .+++|++||+.||++|||++.+++|++||.+|++.++.+.+. .+.|++++++++.+..++.|
T Consensus 131 ----------~~--~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~ 198 (271)
T 2w96_A 131 ----------SI--RPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISN 198 (271)
T ss_dssp ----------SS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHS
T ss_pred ----------CC--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 12 488999999999999999999999999999999999987543 56899999999888889999
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCcccccc--------ccCCHHHHHHHHHHHHHhhcCCCCcc
Q 023880 157 KSEVVACGVVYAAARRFQIPLPENPPWWKA--------FDAEKSGIDEVCRVLAHLYSLPKAKY 212 (276)
Q Consensus 157 ~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~--------~~~~~~~v~~i~~~ll~ly~~~k~~~ 212 (276)
+|+.||+||||+|...++.+.+..+.|+.. .|++++++.+|++.|.++|...-.+.
T Consensus 199 ~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~~~~~~~ 262 (271)
T 2w96_A 199 PPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESSLRQA 262 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887544444456652 68999999999999999998765544
No 12
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.9e-34 Score=253.32 Aligned_cols=191 Identities=13% Similarity=0.093 Sum_probs=167.7
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccC-CcCHHHHHHHHHHhhhhccCC
Q 023880 2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEES-PRKARQVIIVFHRMECRREGL 80 (276)
Q Consensus 2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~-~~~l~dii~v~~~i~~~~~~~ 80 (276)
..++||.++|..++|++.|.++|++|+|||+.++++.+.+.+++|+||||||||+||. +++++|++.+++.
T Consensus 53 ~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~-------- 124 (257)
T 1g3n_C 53 LLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAAD-------- 124 (257)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTT--------
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCC--------
Confidence 3589999999999999999999999999999999999999999999999999999997 8999999876542
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCH----HHHHHHHHHHHhhhcccccccC
Q 023880 81 PIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPL----ELRQEAWNLANDSLRTTLCVRF 156 (276)
Q Consensus 81 p~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~----~l~~~A~~~l~ds~~t~l~l~~ 156 (276)
.| .+++|++||+.||++|||++.+++|++||.+|++.++.+. .+.+.|++++++++.+..++.|
T Consensus 125 ----------~~--~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~ 192 (257)
T 1g3n_C 125 ----------SF--SRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSL 192 (257)
T ss_dssp ----------CS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGS
T ss_pred ----------CC--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCc
Confidence 12 4889999999999999999999999999999999998753 3468899999999999999999
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCC-ccccccc----cCCHHHHHHHHHHHHHhhcCCCCcc
Q 023880 157 KSEVVACGVVYAAARRFQIPLPEN-PPWWKAF----DAEKSGIDEVCRVLAHLYSLPKAKY 212 (276)
Q Consensus 157 ~P~~IAaAaI~lA~~~~~~~lp~~-~~W~~~~----~~~~~~v~~i~~~ll~ly~~~k~~~ 212 (276)
+|+.||+|||++|...++.+.+.+ +.|+..+ |++++++.+|++.|.++|.+.+.+.
T Consensus 193 ~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~~~~~~~ 253 (257)
T 1g3n_C 193 PASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSVSDFDLRI 253 (257)
T ss_dssp CHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCHHh
Confidence 999999999999999988643322 3577754 8999999999999999998765554
No 13
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=2.7e-32 Score=241.07 Aligned_cols=184 Identities=14% Similarity=0.210 Sum_probs=160.9
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccC-CcCHHHHHHHHHHhhhhccCCC
Q 023880 3 YAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEES-PRKARQVIIVFHRMECRREGLP 81 (276)
Q Consensus 3 ~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~-~~~l~dii~v~~~i~~~~~~~p 81 (276)
.++||.+++..++|++.|.++|++|+|||+.++++.+.+.+++|+||||||||+||. +++++|++.+++.
T Consensus 55 lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~--------- 125 (254)
T 2f2c_A 55 LLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCD--------- 125 (254)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC-----------
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCC---------
Confidence 589999999999999999999999999999999999999999999999999999995 8899998754431
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCHH----HHHHHHHHHHhhhcccccccCC
Q 023880 82 IEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE----LRQEAWNLANDSLRTTLCVRFK 157 (276)
Q Consensus 82 ~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~~----l~~~A~~~l~ds~~t~l~l~~~ 157 (276)
.| .+++|++||+.||++|||++.+++|++||.+|++.++.+.+ +.+.|++++++++.+..++.|+
T Consensus 126 ---------~~--~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~ 194 (254)
T 2f2c_A 126 ---------CF--TNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLS 194 (254)
T ss_dssp ----------C--CHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSC
T ss_pred ---------CC--CHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccC
Confidence 22 48899999999999999999999999999999999988653 4678999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCcccc--------ccccCCHHHHHHHHHHHHHhhcCCCC
Q 023880 158 SEVVACGVVYAAARRFQIPLPENPPWW--------KAFDAEKSGIDEVCRVLAHLYSLPKA 210 (276)
Q Consensus 158 P~~IAaAaI~lA~~~~~~~lp~~~~W~--------~~~~~~~~~v~~i~~~ll~ly~~~k~ 210 (276)
|+.||+|||++|....+. ++.|| ...|++.+++.+|++.|.+++.+.+.
T Consensus 195 PS~iAaAai~la~~~~~~----~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~~~~~ 251 (254)
T 2f2c_A 195 PGLICAGGLLTTIETDNT----NCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFSLYDL 251 (254)
T ss_dssp HHHHHHHHHHHHHHTTCC----SSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHHhcCC----CCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999997421 22244 23588999999999999999976544
No 14
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.97 E-value=1.5e-30 Score=221.79 Aligned_cols=182 Identities=13% Similarity=0.163 Sum_probs=169.4
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHHHhhhhccCCC
Q 023880 2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLP 81 (276)
Q Consensus 2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~i~~~~~~~p 81 (276)
+++++|.++|..|+||+.+..+|+.||+||+.++.+++.++..+++||||+|||.|+.|++++|+..++. +
T Consensus 11 ~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~-v-------- 81 (200)
T 1ais_B 11 FALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIAR-V-------- 81 (200)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTT-S--------
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHC-C--------
Confidence 5789999999999999999999999999999999999999999999999999999999999999998754 1
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhCccccc--cChHHHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChH
Q 023880 82 IEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHV--EHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSE 159 (276)
Q Consensus 82 ~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v--~~P~~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~ 159 (276)
.+.+|.++|+.|++.|||++.+ .+|+.||.+|+..+++++++.+.||.+++++..+.++.+++|.
T Consensus 82 -------------~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~ 148 (200)
T 1ais_B 82 -------------DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPA 148 (200)
T ss_dssp -------------CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHH
T ss_pred -------------CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHH
Confidence 2568889999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhhc
Q 023880 160 VVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYS 206 (276)
Q Consensus 160 ~IAaAaI~lA~~~~~~~lp~~~~W~~~~~~~~~~v~~i~~~ll~ly~ 206 (276)
.||+||||+|++.+|.+.+. +.+....|+++.+|..+.++|.+.+.
T Consensus 149 ~iAaAaly~A~~~~~~~~t~-~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 149 GLVAAALYIASLLEGEKRTQ-REVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHHHHHHHTTCCCCH-HHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCH-HHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999977543 45888889999999999999988765
No 15
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=2.9e-30 Score=227.73 Aligned_cols=188 Identities=12% Similarity=0.100 Sum_probs=160.2
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccC-CcCHHHHHHHHHHhhhhccCCC
Q 023880 3 YAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEES-PRKARQVIIVFHRMECRREGLP 81 (276)
Q Consensus 3 ~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~-~~~l~dii~v~~~i~~~~~~~p 81 (276)
.++||.+++..++|.+.|.++|++|+|||+.++++.+.+.+++|+||||||+|+||. |.++++++.+++.
T Consensus 52 lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~--------- 122 (252)
T 1f5q_B 52 LTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGG--------- 122 (252)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCC---------
Confidence 589999999999999999999999999999999999999999999999999999997 7889998876542
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCH----HHHHHHHHHHHhhhcccccccCC
Q 023880 82 IEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPL----ELRQEAWNLANDSLRTTLCVRFK 157 (276)
Q Consensus 82 ~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~----~l~~~A~~~l~ds~~t~l~l~~~ 157 (276)
.| .+++|++||+.||++|+|++++++|+.||.+|++.++.+. .+...|+++++.++....++.|+
T Consensus 123 ---------~y--t~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~~ 191 (252)
T 1f5q_B 123 ---------AT--TADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMKR 191 (252)
T ss_dssp ---------TC--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTSC
T ss_pred ---------CC--CHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhccC
Confidence 12 4789999999999999999999999999999999998764 36678999999999888899999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCc----cccccccCCHHHHHHHHHHHHHhhcCCCCccc
Q 023880 158 SEVVACGVVYAAARRFQIPLPENP----PWWKAFDAEKSGIDEVCRVLAHLYSLPKAKYI 213 (276)
Q Consensus 158 P~~IAaAaI~lA~~~~~~~lp~~~----~W~~~~~~~~~~v~~i~~~ll~ly~~~k~~~~ 213 (276)
|++||+||+.++. +...++.. .++...|++.+++.+|++.|.+++...+.+|.
T Consensus 192 PS~iAaaa~~~~l---~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~~~~~~~ 248 (252)
T 1f5q_B 192 PVLITLACMHLTM---NQKYDYYENRIDGVCKSLYITKEELHQCCDLVDIAIVSFDENYF 248 (252)
T ss_dssp HHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCTTHH
T ss_pred HHHHHHHHHHHHh---ccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhChhhh
Confidence 9999999965544 32222111 12345689999999999999999877666654
No 16
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=4.6e-30 Score=230.24 Aligned_cols=178 Identities=15% Similarity=0.169 Sum_probs=157.0
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhc-cccccchHHHHHHHHHHHhhhcccC-CcCHHHHHHHHHHhhhhccC
Q 023880 2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCK-RSFARFDVKIVAASSVWLASKLEES-PRKARQVIIVFHRMECRREG 79 (276)
Q Consensus 2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~-~s~~~~~~~~va~acLfLA~K~EE~-~~~l~dii~v~~~i~~~~~~ 79 (276)
..++||.+++.++++++.|.++|++|+|||+.+ +++.+.+.+++|+||||||||+||. +++++|++.+++.
T Consensus 52 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~------- 124 (283)
T 1w98_B 52 ILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDG------- 124 (283)
T ss_dssp HHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTT-------
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcC-------
Confidence 358999999999999999999999999999998 6899999999999999999999997 8899999865431
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHcCCCH-----------HHHHHHHHHHHhhh
Q 023880 80 LPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPL-----------ELRQEAWNLANDSL 148 (276)
Q Consensus 80 ~p~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~~l~~~~-----------~l~~~A~~~l~ds~ 148 (276)
.| .+++|++||+.||++|||++.+++|++||.+|++.++.++ .....+.+++++++
T Consensus 125 -----------~~--~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl 191 (283)
T 1w98_B 125 -----------AC--SGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCV 191 (283)
T ss_dssp -----------SS--CHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHH
T ss_pred -----------CC--CHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 12 4889999999999999999999999999999999876532 23445777899999
Q ss_pred cccccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhhcC
Q 023880 149 RTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYSL 207 (276)
Q Consensus 149 ~t~l~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~~~~~~~~v~~i~~~ll~ly~~ 207 (276)
.+..++.|+|+.||+||||+|+. .+.|....|+++++|.+|++.|..++..
T Consensus 192 ~d~~~l~~~PS~iAaAai~la~~--------~~~l~~~tg~~~~~i~~c~~~l~~~~~~ 242 (283)
T 1w98_B 192 LDVDCLEFPYGILAASALYHFSS--------SELMQKVSGYQWCDIENCVKWMVPFAMV 242 (283)
T ss_dssp HSGGGGGSCHHHHHHHHHHHTSC--------HHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcCCHHHHHHHHHHHHHC--------hHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999863 2468889999999999999999998874
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-28 Score=226.99 Aligned_cols=182 Identities=13% Similarity=0.142 Sum_probs=80.0
Q ss_pred chhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHHHhhhhccCCC
Q 023880 2 QYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLP 81 (276)
Q Consensus 2 ~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~i~~~~~~~p 81 (276)
++.++|.++|..|+||+.++.+|+.||+||+..+.+++.+...|++||||+|||.|+.|++++||+.++. +
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~-v-------- 198 (345)
T 3k7a_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH-V-------- 198 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSS-C--------
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC-C--------
Confidence 4678999999999999999999999999999999999999999999999999999999999999987654 1
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhC------------ccccccChHHHHHHHHHHcCCCHHHHHHHHHHHHhhhc
Q 023880 82 IEHLDLFSKKFSELKMEMSRTERHILKEMG------------FVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLR 149 (276)
Q Consensus 82 ~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~------------Fdl~v~~P~~~L~~~l~~l~~~~~l~~~A~~~l~ds~~ 149 (276)
.+.+|.++++.|++.|+ |++.+.+|+.||.+|+..|+++.++.+.||.+++++.+
T Consensus 199 -------------~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~ 265 (345)
T 3k7a_M 199 -------------KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKE 265 (345)
T ss_dssp -------------CSHHHHHHHHHHHHHHTCC------------------------------------------------
T ss_pred -------------CHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 14578888889999888 99999999999999999999999999999999999999
Q ss_pred ccccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhhc
Q 023880 150 TTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYS 206 (276)
Q Consensus 150 t~l~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~~~~~~~~v~~i~~~ll~ly~ 206 (276)
+.++.+++|..||+||||+|+++++.+.+. +.|....++++..|...+++|.+.+.
T Consensus 266 ~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~-~eIa~~~~Vse~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 266 IKEIAGKSPITIAVVSIYLNILLFQIPITA-AKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp ---------------------------------------------------------
T ss_pred hchhcCCCHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877653 46999999999999999998887664
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.86 E-value=1.8e-22 Score=185.27 Aligned_cols=183 Identities=13% Similarity=0.139 Sum_probs=79.0
Q ss_pred CchhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHHHhhhhccCC
Q 023880 1 MQYAGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGL 80 (276)
Q Consensus 1 ~~~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~i~~~~~~~ 80 (276)
+++.+.|.++|..|+||..+..+|..+|++++..+.+++.+...+++||||+|||.++.|++++||..++. +
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~-v------- 198 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIH-V------- 198 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHT-C-------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhC-C-------
Confidence 35678999999999999999999999999999999999999999999999999999999999999998765 1
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHhCcc------------ccccChHHHHHHHHHHcCCCHHHHHHHHHHHHhhh
Q 023880 81 PIEHLDLFSKKFSELKMEMSRTERHILKEMGFV------------CHVEHPHKFISNYLATLETPLELRQEAWNLANDSL 148 (276)
Q Consensus 81 p~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fd------------l~v~~P~~~L~~~l~~l~~~~~l~~~A~~~l~ds~ 148 (276)
.+.+|.+..+.|++.|+.. +...+|..|+.+|+..|+++.++.+.|+.+++.+.
T Consensus 199 --------------~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~ 264 (345)
T 4bbr_M 199 --------------KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCK 264 (345)
T ss_dssp --------------CTTHHHHHHHHHHHCC--------------------------------------------------
T ss_pred --------------CHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 1446777888888888864 67789999999999999999999999999999999
Q ss_pred cccccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHHHHHHhhc
Q 023880 149 RTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCRVLAHLYS 206 (276)
Q Consensus 149 ~t~l~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~~~~~~~~v~~i~~~ll~ly~ 206 (276)
...++.+.+|..||+||||+|++++|.+++. ..--...++++..|...+++|.+...
T Consensus 265 ~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~-~eIa~v~~Vse~TIr~rykel~~~~~ 321 (345)
T 4bbr_M 265 EIKEIAGKSPITIAVVSIYLNILLFQIPITA-AKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp ----------------------------------------------------------
T ss_pred hcccccCCChHHHHHHHHHHHHHHhCCCCCH-HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876543 34667778888888887777765433
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.32 E-value=2.6e-06 Score=71.54 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=76.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHHHhhhhccCCCcc
Q 023880 4 AGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIE 83 (276)
Q Consensus 4 ~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~i~~~~~~~p~~ 83 (276)
..||.+++..|+++..+..+|..++++.....-..++++..+++||||+||+..+.+++.+++..+...
T Consensus 109 ~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~v----------- 177 (200)
T 1ais_B 109 TDYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARV----------- 177 (200)
T ss_dssp GGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCC-----------
Confidence 478999999999999999999999999998888889999999999999999999999999999887652
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhCccc
Q 023880 84 HLDLFSKKFSELKMEMSRTERHILKEMGFVC 114 (276)
Q Consensus 84 ~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl 114 (276)
.+.+|.+.=+.+.+.||.++
T Consensus 178 -----------s~~ti~~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 178 -----------TEVTVRNRYKELVEKLKIKV 197 (200)
T ss_dssp -----------CHHHHHHHHHHHHHHHTCCC
T ss_pred -----------CHHHHHHHHHHHHHHcCCCC
Confidence 13455566666777777654
No 20
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.95 E-value=6e-05 Score=66.75 Aligned_cols=103 Identities=10% Similarity=0.002 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhHhcc---ccccchHHHHHHHHHHHhhhcccC-CcCHHHHHHHHHHhhhhcc
Q 023880 3 YAGSIVSFICVVYRPQAVMATGQVLFHRFYCKR---SFARFDVKIVAASSVWLASKLEES-PRKARQVIIVFHRMECRRE 78 (276)
Q Consensus 3 ~~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~---s~~~~~~~~va~acLfLA~K~EE~-~~~l~dii~v~~~i~~~~~ 78 (276)
.-+||.++.+.-+++..++-.|++|++|+..+. .+.....+.+.++||.+|+|+-+. ...-+....+..
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgG------- 149 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGG------- 149 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHT-------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccC-------
Confidence 457999999999999999999999999998753 245678999999999999998653 444454444421
Q ss_pred CCCccccccchHHHHHHHHHHHHHHHHHHHHhCccccccChHHHHHHHHH
Q 023880 79 GLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLA 128 (276)
Q Consensus 79 ~~p~~~~d~~~~~y~~~k~~Il~~E~~IL~~L~Fdl~v~~P~~~L~~~l~ 128 (276)
. ..+++-.+|+..|..|+|++.+. +..|...|.+
T Consensus 150 -i--------------sl~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E 183 (293)
T 2pmi_B 150 -V--------------RCHELNILENDFLKRVNYRIIPR-DHNITLCSIE 183 (293)
T ss_dssp -S--------------CHHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHH
T ss_pred -c--------------CHHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHH
Confidence 1 25688899999999999999876 4445443433
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.85 E-value=5.5e-05 Score=63.72 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=62.3
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHH
Q 023880 4 AGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFH 71 (276)
Q Consensus 4 ~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~ 71 (276)
.+||.+++..|+++..+..+|..++.+-+...-..++.+..+|+||||+||+..+.++..+++..++.
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~ 170 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAG 170 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhC
Confidence 47899999999999999999999999998877788999999999999999999999999999877654
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=96.72 E-value=0.0039 Score=56.67 Aligned_cols=93 Identities=9% Similarity=0.024 Sum_probs=77.1
Q ss_pred cccChHHHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHH
Q 023880 115 HVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGI 194 (276)
Q Consensus 115 ~v~~P~~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~~~~~~~~v 194 (276)
+....+..|..++..|++++.+...|..+....+...+.-+.+...||+||||+|++..+.+..- .+....++++..+|
T Consensus 125 ~L~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl-~eI~~~~~v~~kei 203 (345)
T 4bbr_M 125 EVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTF-KEIQSLIHVKTKEF 203 (345)
T ss_dssp STTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCH-HHHHHHHTCCTTHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccH-HHHHHHhCCCHHHH
Confidence 34567888999999999999999999999999888777888999999999999999999876432 24666778999999
Q ss_pred HHHHHHHHHhhcCC
Q 023880 195 DEVCRVLAHLYSLP 208 (276)
Q Consensus 195 ~~i~~~ll~ly~~~ 208 (276)
..+.+.|.+.+...
T Consensus 204 gr~~k~l~~~L~l~ 217 (345)
T 4bbr_M 204 GKTLNIMKNILRGK 217 (345)
T ss_dssp HHHHHHHHHCC---
T ss_pred HHHHHHHHHHhCcc
Confidence 99999888877653
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.00048 Score=62.71 Aligned_cols=68 Identities=18% Similarity=0.110 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhHhccccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHH
Q 023880 4 AGSIVSFICVVYRPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFH 71 (276)
Q Consensus 4 ~~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~ 71 (276)
..||.++|..|+|+..+..+|..+.++.....-..++.+..||+||||+|++..+..++.+++..++.
T Consensus 236 ~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~ 303 (345)
T 3k7a_M 236 LTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQ 303 (345)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
Confidence 47899999999999999999999999998776778899999999999999999887777777766554
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=96.17 E-value=0.031 Score=47.60 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhhccccccc-CChHHHHHHHHHHHHHHcCCCCCCC-------ccccccccCCH
Q 023880 120 HKFISNYLATLETPLELRQEAWNLANDSLRTTLCVR-FKSEVVACGVVYAAARRFQIPLPEN-------PPWWKAFDAEK 191 (276)
Q Consensus 120 ~~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~-~~P~~IAaAaI~lA~~~~~~~lp~~-------~~W~~~~~~~~ 191 (276)
.++|......+++++.+...|..++...+.....-+ +++..||+||+|+|+|.-+.+.+-. .-|-..+.++.
T Consensus 32 ~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~~~ 111 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSR 111 (235)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCCCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhccH
Confidence 357888889999999999999999999887777777 9999999999999999988654311 01112245688
Q ss_pred HHHHHHHHHHHHhhc
Q 023880 192 SGIDEVCRVLAHLYS 206 (276)
Q Consensus 192 ~~v~~i~~~ll~ly~ 206 (276)
++|..+-..|++...
T Consensus 112 ~~I~~~E~~iL~~L~ 126 (235)
T 1zp2_A 112 SNISEIEFEIISVLD 126 (235)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 889888888888765
No 25
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=95.69 E-value=0.062 Score=47.23 Aligned_cols=86 Identities=15% Similarity=0.033 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHHHHHHHHHHHHHHcCCCCCCCcc----------------cc
Q 023880 121 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPP----------------WW 184 (276)
Q Consensus 121 ~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~----------------W~ 184 (276)
++|......+++++++...|..++...+....+-.+++..||+||+|+|+|.-+.+.|.-.. +-
T Consensus 48 ~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~~ 127 (285)
T 3rgf_B 48 NVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFP 127 (285)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccCc
Confidence 56778888999999999999999999887777889999999999999999998876552110 11
Q ss_pred ccccCCHHHHHHHHHHHHHhhc
Q 023880 185 KAFDAEKSGIDEVCRVLAHLYS 206 (276)
Q Consensus 185 ~~~~~~~~~v~~i~~~ll~ly~ 206 (276)
..+..+.++|.++-..|++...
T Consensus 128 ~~~~~~~~~Il~~E~~iL~~L~ 149 (285)
T 3rgf_B 128 KEFPYRMNHILECEFYLLELMD 149 (285)
T ss_dssp SCCCCCHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHcC
Confidence 1223456677777777766654
No 26
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=95.19 E-value=0.13 Score=45.99 Aligned_cols=85 Identities=9% Similarity=0.128 Sum_probs=64.0
Q ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHhhhcccccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCC-------H
Q 023880 121 KFISNYLATLE--TPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAE-------K 191 (276)
Q Consensus 121 ~~L~~~l~~l~--~~~~l~~~A~~~l~ds~~t~l~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~~~~~-------~ 191 (276)
.+|..++..++ +++.+...|..++...+....+..++|..||+||+|+|++.-+.+.+- ...-..+..+ .
T Consensus 62 ~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l-~d~v~~~~~~p~~~~~~~ 140 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSS-PQFVGNLRESPLGQEKAL 140 (323)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCH-HHHGGGSSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCH-HHHHHHhccChhhhHHHH
Confidence 45677888899 999999999999999888888889999999999999999998876431 1122222223 4
Q ss_pred HHHHHHHHHHHHhhc
Q 023880 192 SGIDEVCRVLAHLYS 206 (276)
Q Consensus 192 ~~v~~i~~~ll~ly~ 206 (276)
++|..+-..|++...
T Consensus 141 ~~Il~~E~~iL~~L~ 155 (323)
T 1jkw_A 141 EQILEYELLLIQQLN 155 (323)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 567677677766654
No 27
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=94.98 E-value=0.11 Score=45.09 Aligned_cols=86 Identities=8% Similarity=0.038 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHHHHHHHHHHHHHHcCCCCCCCccccccc--cCCHHHHHHHH
Q 023880 121 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAF--DAEKSGIDEVC 198 (276)
Q Consensus 121 ~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~~--~~~~~~v~~i~ 198 (276)
++|......++++++...+|..+++..+.....-+.....+|+||+++|++..+...|.-.+..... .++.++|..+-
T Consensus 43 ~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE 122 (269)
T 2b9r_A 43 DWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQME 122 (269)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHH
Confidence 4567777888889999999999998877666666788999999999999999877544322222222 25777887777
Q ss_pred HHHHHhhc
Q 023880 199 RVLAHLYS 206 (276)
Q Consensus 199 ~~ll~ly~ 206 (276)
..|++...
T Consensus 123 ~~IL~~L~ 130 (269)
T 2b9r_A 123 MKILRALN 130 (269)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 77777654
No 28
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=94.57 E-value=0.11 Score=44.61 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHHHHHHHHHHHHHHcCCC
Q 023880 120 HKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIP 176 (276)
Q Consensus 120 ~~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~IAaAaI~lA~~~~~~~ 176 (276)
.++|......++++++....|..+++..+....+-.+++..+|+||+|+|+|.-+.+
T Consensus 35 ~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~p 91 (257)
T 2ivx_A 35 ANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQA 91 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccCC
Confidence 367788889999999999999999999887777788999999999999999998874
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=94.38 E-value=0.12 Score=44.70 Aligned_cols=86 Identities=14% Similarity=0.081 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHHHHHHHHHHHHHHcCCCCCCCccccccc--cCCHHHHHHHH
Q 023880 121 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAF--DAEKSGIDEVC 198 (276)
Q Consensus 121 ~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~~--~~~~~~v~~i~ 198 (276)
+++......++++.+...+|..+++..+...-.-......+|+||+++|+|..+...|.-.+..... .++.++|..+-
T Consensus 44 dwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE 123 (260)
T 2cch_B 44 DWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRME 123 (260)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHH
Confidence 4566666777888888888888887766554455667889999999999999887444322222222 26788888888
Q ss_pred HHHHHhhc
Q 023880 199 RVLAHLYS 206 (276)
Q Consensus 199 ~~ll~ly~ 206 (276)
..|++...
T Consensus 124 ~~iL~~L~ 131 (260)
T 2cch_B 124 HLVLKVLT 131 (260)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 88888765
No 30
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=94.37 E-value=0.13 Score=44.08 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHHHHHHHHHHHHHHcCCC
Q 023880 121 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIP 176 (276)
Q Consensus 121 ~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~IAaAaI~lA~~~~~~~ 176 (276)
++|......++++++....|..+++..+....+-.+++..||+||+|+|+|.-+.+
T Consensus 46 ~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~ 101 (258)
T 2i53_A 46 RFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETP 101 (258)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccccc
Confidence 57888889999999999999999999887777778999999999999999998764
No 31
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=94.00 E-value=0.18 Score=43.40 Aligned_cols=86 Identities=8% Similarity=0.002 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHHHHHHHHHHHHHHcCCCCCCCccccccc--cCCHHHHHHHH
Q 023880 121 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAF--DAEKSGIDEVC 198 (276)
Q Consensus 121 ~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~~--~~~~~~v~~i~ 198 (276)
+++......+++..+...+|..+++..+.....-+.....+|++|+++|+|.-+...|.-...-... .++.++|..+-
T Consensus 56 dwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE 135 (257)
T 1g3n_C 56 TWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQE 135 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHH
Confidence 5566677788899999999999998887666666778899999999999998776444322222222 26788888888
Q ss_pred HHHHHhhc
Q 023880 199 RVLAHLYS 206 (276)
Q Consensus 199 ~~ll~ly~ 206 (276)
..|++...
T Consensus 136 ~~iL~~L~ 143 (257)
T 1g3n_C 136 KELLEKLA 143 (257)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 88887765
No 32
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=93.88 E-value=0.22 Score=44.14 Aligned_cols=86 Identities=6% Similarity=-0.075 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHHHHHHHHHHHHHHcCCCCCCCccccccc--cCCHHHHHHHH
Q 023880 121 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAF--DAEKSGIDEVC 198 (276)
Q Consensus 121 ~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~~--~~~~~~v~~i~ 198 (276)
++|......++++.+...+|..+++..+....+-......+|++|+++|+|.-+...|.-...-... .++.++|.++-
T Consensus 76 dwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE 155 (306)
T 3g33_B 76 YWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWE 155 (306)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHH
Confidence 4566666778888888999999998877666667889999999999999998765444322222222 25677887777
Q ss_pred HHHHHhhc
Q 023880 199 RVLAHLYS 206 (276)
Q Consensus 199 ~~ll~ly~ 206 (276)
..|++...
T Consensus 156 ~~IL~~L~ 163 (306)
T 3g33_B 156 VLVLGKLK 163 (306)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 77776654
No 33
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=93.87 E-value=0.27 Score=42.21 Aligned_cols=86 Identities=3% Similarity=-0.089 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHHHHHHHHHHHHHHcCCCCCCCccccccc--cCCHHHHHHHH
Q 023880 121 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAF--DAEKSGIDEVC 198 (276)
Q Consensus 121 ~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~~--~~~~~~v~~i~ 198 (276)
+++......+++..+...+|..+++..+.....-+.....+|++|+++|+|.-+...|.-.+.-... .++.++|..+-
T Consensus 57 dwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE 136 (254)
T 2f2c_A 57 TWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQE 136 (254)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHH
Confidence 4566677778888899999999998877666667788999999999999999775444322222222 26788999998
Q ss_pred HHHHHhhc
Q 023880 199 RVLAHLYS 206 (276)
Q Consensus 199 ~~ll~ly~ 206 (276)
..|++...
T Consensus 137 ~~IL~~L~ 144 (254)
T 2f2c_A 137 KDILEALK 144 (254)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 88888775
No 34
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=93.66 E-value=0.15 Score=46.39 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHHHHHHHHHHHHHHcCCC
Q 023880 120 HKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIP 176 (276)
Q Consensus 120 ~~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~IAaAaI~lA~~~~~~~ 176 (276)
.++|......+++++++..+|..+++..+....+-.+++..||+||+|+|+|..+.+
T Consensus 42 v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p 98 (358)
T 2pk2_A 42 ANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQP 98 (358)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccCC
Confidence 356777888889999999999999999887777788999999999999999987764
No 35
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=93.48 E-value=0.3 Score=42.71 Aligned_cols=86 Identities=10% Similarity=0.041 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcc-cccccCChHHHHHHHHHHHHHHcCCCCCCCccccccc--cCCHHHHHHH
Q 023880 121 KFISNYLATLETPLELRQEAWNLANDSLRT-TLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAF--DAEKSGIDEV 197 (276)
Q Consensus 121 ~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t-~l~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~~--~~~~~~v~~i 197 (276)
+++......+++..+...+|..+++..+.. ...-+.....+|++|+++|+|..+...|.-.+.-... .++.++|..+
T Consensus 55 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~m 134 (283)
T 1w98_B 55 DWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTM 134 (283)
T ss_dssp HHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHH
Confidence 456666677788888999999999887654 3456788999999999999999876444322222222 2578899888
Q ss_pred HHHHHHhhc
Q 023880 198 CRVLAHLYS 206 (276)
Q Consensus 198 ~~~ll~ly~ 206 (276)
-..|++...
T Consensus 135 E~~IL~~L~ 143 (283)
T 1w98_B 135 ELMIMKALK 143 (283)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 888888765
No 36
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=93.42 E-value=0.31 Score=42.22 Aligned_cols=86 Identities=7% Similarity=-0.010 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHHHHHHHHHHHHHHcCCCCCCCcccccc--ccCCHHHHHHHH
Q 023880 121 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKA--FDAEKSGIDEVC 198 (276)
Q Consensus 121 ~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~--~~~~~~~v~~i~ 198 (276)
+++......++++.+...+|..+++..+...-.-......+|+||+|+|+|..+...|.-...-.. ..++.++|..+-
T Consensus 62 ~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE 141 (271)
T 2w96_A 62 TWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQME 141 (271)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 455666677788888889999999887765556678899999999999999988632221111111 236788888888
Q ss_pred HHHHHhhc
Q 023880 199 RVLAHLYS 206 (276)
Q Consensus 199 ~~ll~ly~ 206 (276)
..|++...
T Consensus 142 ~~IL~~L~ 149 (271)
T 2w96_A 142 LLLVNKLK 149 (271)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 88888765
No 37
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=92.75 E-value=0.37 Score=35.25 Aligned_cols=60 Identities=5% Similarity=0.067 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhHhccc-----cccchHHHHHHHHHHHhhhcccCCcCHHHHH
Q 023880 7 IVSFICVVYRPQAVMATGQVLFHRFYCKRS-----FARFDVKIVAASSVWLASKLEESPRKARQVI 67 (276)
Q Consensus 7 I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s-----~~~~~~~~va~acLfLA~K~EE~~~~l~dii 67 (276)
|.++|..||+.. +...|..++++|-..-. -.+++.-.++++|+|.|||.......=..++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~ 70 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMV 70 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHH
Confidence 789999999998 67788899999964311 2256677899999999999877644433333
No 38
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=91.25 E-value=0.5 Score=39.38 Aligned_cols=63 Identities=19% Similarity=0.149 Sum_probs=52.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhHhccc---cccchHHHHHHHHHHHhhhcccCCcCHHHHH
Q 023880 5 GSIVSFICVVYRPQAVMATGQVLFHRFYCKRS---FARFDVKIVAASSVWLASKLEESPRKARQVI 67 (276)
Q Consensus 5 ~~I~~v~~~L~L~~~t~~tA~~~f~RF~~~~s---~~~~~~~~va~acLfLA~K~EE~~~~l~dii 67 (276)
+-|+.+.++-++|..++..|+.+-++|.-.+. -+-..++.|++||+.+|+---..|..+.++.
T Consensus 17 nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r 82 (260)
T 3h4c_A 17 NCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVR 82 (260)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 45688899999999999999999999976432 2335678999999999998878899888764
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=90.00 E-value=0.95 Score=38.89 Aligned_cols=86 Identities=9% Similarity=-0.115 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhhcccccccCChHHHHHHHHHHHHHHcCCCCCCCcccc--ccccCCHHHHHHHH
Q 023880 121 KFISNYLATLETPLELRQEAWNLANDSLRTTLCVRFKSEVVACGVVYAAARRFQIPLPENPPWW--KAFDAEKSGIDEVC 198 (276)
Q Consensus 121 ~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~--~~~~~~~~~v~~i~ 198 (276)
+++......+++..+...+|.++++..+...-.-+.....+|++|+++|+|.-+...|.-...- ....++.++|.++-
T Consensus 54 dWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE 133 (252)
T 1f5q_B 54 TWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLE 133 (252)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHH
Confidence 4566666778888899999999998877655556677889999999999998876444322211 12236788888888
Q ss_pred HHHHHhhc
Q 023880 199 RVLAHLYS 206 (276)
Q Consensus 199 ~~ll~ly~ 206 (276)
..|++...
T Consensus 134 ~~IL~~L~ 141 (252)
T 1f5q_B 134 VKSLDTLS 141 (252)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 88888765
No 40
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=84.33 E-value=2.5 Score=38.09 Aligned_cols=68 Identities=7% Similarity=0.063 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCCH-HHHHHHHHHHHHhHhc--cccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHHH
Q 023880 5 GSIVSFICVVYRPQ-AVMATGQVLFHRFYCK--RSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHR 72 (276)
Q Consensus 5 ~~I~~v~~~L~L~~-~t~~tA~~~f~RF~~~--~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~ 72 (276)
.=|+++|.+|+++. ......-++|...+.. .-+++.+..-+.+.|+|.-||+.....+.++|+..+.+
T Consensus 220 ~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr~ 290 (347)
T 2r7g_A 220 LRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKD 290 (347)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 44789999998775 4555566677766653 45788999999999999999999988999999987654
No 41
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=83.40 E-value=3.1 Score=38.37 Aligned_cols=69 Identities=7% Similarity=0.051 Sum_probs=52.8
Q ss_pred hHHHHHHHHHhCCCH-HHHHHHHHHHHHhHhc--cccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHHH
Q 023880 4 AGSIVSFICVVYRPQ-AVMATGQVLFHRFYCK--RSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHR 72 (276)
Q Consensus 4 ~~~I~~v~~~L~L~~-~t~~tA~~~f~RF~~~--~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~ 72 (276)
+.=|+++|.+|+++. .....--+.|+..+.. .-+++.+..-+.+.|+|.-||+.....+.++|+..+.+
T Consensus 283 a~Rl~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr~ 354 (411)
T 4ell_A 283 YLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKD 354 (411)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHh
Confidence 344789999999875 4434444555555442 45788999999999999999999989999999987654
No 42
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=81.47 E-value=7.1 Score=34.24 Aligned_cols=88 Identities=3% Similarity=-0.074 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhhhcc-c-ccc-cCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHH
Q 023880 119 PHKFISNYLATLETPLELRQEAWNLANDSLRT-T-LCV-RFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGID 195 (276)
Q Consensus 119 P~~~L~~~l~~l~~~~~l~~~A~~~l~ds~~t-~-l~l-~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~~~~~~~~v~ 195 (276)
-++||.++.+...++....-.|..+++..... + +.+ .....-+-++|+.+|.|.+.-....+..|-++-|++..++.
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN 156 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELN 156 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHH
Confidence 37899999988888888877777777655431 2 222 46788899999999999987665666788888899999999
Q ss_pred HHHHHHHHhhc
Q 023880 196 EVCRVLAHLYS 206 (276)
Q Consensus 196 ~i~~~ll~ly~ 206 (276)
.+-.++|.+..
T Consensus 157 ~LE~eFL~lLd 167 (293)
T 2pmi_B 157 ILENDFLKRVN 167 (293)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHcC
Confidence 99999988754
No 43
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=80.83 E-value=7.9 Score=28.08 Aligned_cols=79 Identities=10% Similarity=0.183 Sum_probs=51.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhhccc------ccccCChHHHHHHHHHHHHHHcCCCCCCCccccccccCCHHHHHHHHH
Q 023880 126 YLATLETPLELRQEAWNLANDSLRTT------LCVRFKSEVVACGVVYAAARRFQIPLPENPPWWKAFDAEKSGIDEVCR 199 (276)
Q Consensus 126 ~l~~l~~~~~l~~~A~~~l~ds~~t~------l~l~~~P~~IAaAaI~lA~~~~~~~lp~~~~W~~~~~~~~~~v~~i~~ 199 (276)
++-.+|.. ++...|..+++. |+.. ..+.++=.+-++||+|.|++.+...++.. ...+.-|+...+.+.++.
T Consensus 9 LcVqfgc~-e~~~~a~~lL~~-Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~-KL~~~s~lk~~~f~~l~~ 85 (95)
T 3m03_A 9 LAVQFSCI-EAVNMASKILKS-YESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKN-KMVATSGVKKAIFDRLCK 85 (95)
T ss_dssp HHHHHTCG-GGHHHHHHHHHH-HHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHH-HHHHTTCBCHHHHHHHHH
T ss_pred HHHHhCCH-HHHHHHHHHHHH-HHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHH-HHHHHHCCCHHHHHHHHH
Confidence 33344443 255555555544 2221 34567777889999999999998876542 255556788888888888
Q ss_pred HHHHhhcC
Q 023880 200 VLAHLYSL 207 (276)
Q Consensus 200 ~ll~ly~~ 207 (276)
.+.++-.+
T Consensus 86 ~~e~~~~~ 93 (95)
T 3m03_A 86 QLEKIGQQ 93 (95)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88776543
No 44
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=79.71 E-value=22 Score=31.88 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHhCcccccc--------Ch-------------------HHHHHHHHHHcCCC-HHHHHHHHHHHH
Q 023880 94 ELKMEMSRTERHILKEMGFVCHVE--------HP-------------------HKFISNYLATLETP-LELRQEAWNLAN 145 (276)
Q Consensus 94 ~~k~~Il~~E~~IL~~L~Fdl~v~--------~P-------------------~~~L~~~l~~l~~~-~~l~~~A~~~l~ 145 (276)
+++..+-..|..||..|.|.-+-+ .+ ..-|..+|+.|+.+ .++.+.+|.+.+
T Consensus 166 elvkHL~~iEe~iLeslaW~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe 245 (347)
T 2r7g_A 166 EMIKHLERCEHRIMESLAWLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQ 245 (347)
T ss_dssp HHHHHHHHHHHHHHHTGGGSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 467888899999999999965421 11 11134455666544 468889999999
Q ss_pred hhhc--ccccccCChHHHHHHHHHHHHHHcCCC
Q 023880 146 DSLR--TTLCVRFKSEVVACGVVYAAARRFQIP 176 (276)
Q Consensus 146 ds~~--t~l~l~~~P~~IAaAaI~lA~~~~~~~ 176 (276)
.++. +.+.....-.+|-++|||..++..+.+
T Consensus 246 ~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~ 278 (347)
T 2r7g_A 246 HTLQNEYELMRDRHLDQIMMCSMYGICKVKNID 278 (347)
T ss_dssp HHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCC
Confidence 9885 778889999999999999999988754
No 45
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=77.62 E-value=6.6 Score=38.35 Aligned_cols=70 Identities=7% Similarity=0.064 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhCCCH-HHHHHHHHHHHHhHhc--cccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHHHHh
Q 023880 4 AGSIVSFICVVYRPQ-AVMATGQVLFHRFYCK--RSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRM 73 (276)
Q Consensus 4 ~~~I~~v~~~L~L~~-~t~~tA~~~f~RF~~~--~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~~~i 73 (276)
+.=|+++|.+|+++. ......-++|+..+.. .-+++.+..-+.+.|+|.-||+.....+.++|+..+.+.
T Consensus 528 a~Rl~~LC~~L~~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr~q 600 (656)
T 4elj_A 528 YLRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDL 600 (656)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHHhC
Confidence 445889999998774 4555666677776653 457889999999999999999999999999999976654
No 46
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=74.98 E-value=7.7 Score=34.22 Aligned_cols=64 Identities=6% Similarity=-0.050 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhHhcc---ccccchHHHHHHHHHHHhhhccc-CCcCHHHHHHHH
Q 023880 7 IVSFICVVYRPQAVMATGQVLFHRFYCKR---SFARFDVKIVAASSVWLASKLEE-SPRKARQVIIVF 70 (276)
Q Consensus 7 I~~v~~~L~L~~~t~~tA~~~f~RF~~~~---s~~~~~~~~va~acLfLA~K~EE-~~~~l~dii~v~ 70 (276)
..++|+.|+|+..|...|...|++.-..- +-..-+....-.+|||.||...+ ...++..+++.+
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~ 73 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNI 73 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHc
Confidence 46789999999999999999999976531 11222344555666999997544 578888887754
No 47
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=68.62 E-value=17 Score=35.44 Aligned_cols=64 Identities=8% Similarity=-0.023 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhHhc-----cccccchHHHHHHHHHHHhhhcccCCcCHHHHHHHH
Q 023880 6 SIVSFICVVYRPQAVMATGQVLFHRFYCK-----RSFARFDVKIVAASSVWLASKLEESPRKARQVIIVF 70 (276)
Q Consensus 6 ~I~~v~~~L~L~~~t~~tA~~~f~RF~~~-----~s~~~~~~~~va~acLfLA~K~EE~~~~l~dii~v~ 70 (276)
...++|..|++...|...|...|...-.. .++.+...+..|.+ ++.|+.+|+...++..++..+
T Consensus 7 ~f~~lC~~Ln~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC~-ly~~~~~~gn~vsLt~lLr~~ 75 (656)
T 4elj_A 7 DFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICI-FIAAVDLDEMSFTFTELQKNI 75 (656)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHHH-HHHHHHTTCCCSCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhhh-heeeeeccCCeeeHHHHHHHh
Confidence 34688999999999999999999998842 34556666666653 777778888889998887754
No 48
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=53.68 E-value=48 Score=27.56 Aligned_cols=57 Identities=19% Similarity=0.124 Sum_probs=40.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhhc--ccc-cccCChHHHHHHHHHHHHHHcCCCCCC
Q 023880 123 ISNYLATLETPLELRQEAWNLANDSLR--TTL-CVRFKSEVVACGVVYAAARRFQIPLPE 179 (276)
Q Consensus 123 L~~~l~~l~~~~~l~~~A~~~l~ds~~--t~l-~l~~~P~~IAaAaI~lA~~~~~~~lp~ 179 (276)
+.++-++-.+++.+...|..++.-..- -.. --.-.|..+|+||+.+|+...+.|+|-
T Consensus 19 lr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~Pipl 78 (260)
T 3h4c_A 19 MRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPL 78 (260)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccH
Confidence 445556667788888777777765432 111 123478899999999999999999883
No 49
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=43.96 E-value=42 Score=30.81 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=43.1
Q ss_pred HHHHHHcCCC-HHHHHHHHHHHHhhhc--ccccccCChHHHHHHHHHHHHHHcCCC
Q 023880 124 SNYLATLETP-LELRQEAWNLANDSLR--TTLCVRFKSEVVACGVVYAAARRFQIP 176 (276)
Q Consensus 124 ~~~l~~l~~~-~~l~~~A~~~l~ds~~--t~l~l~~~P~~IAaAaI~lA~~~~~~~ 176 (276)
..+|..|+.. +++....|.+.+-++. +.+.....=.+|-++|||.-++..+.+
T Consensus 287 ~~LC~~L~~~~~~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~ 342 (411)
T 4ell_A 287 NTLCERLLSEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNID 342 (411)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCC
Confidence 4456667654 4788899999988875 778889999999999999999987754
No 50
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=43.05 E-value=21 Score=24.64 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCCcccCCCCCCcchhhhc
Q 023880 246 QANNHTTFPIEALVPINPESGGSKVKQH 273 (276)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (276)
|+++.-+.+..+.+|..+..|+.|.||.
T Consensus 6 p~~~~~~~~~~~~gPttprkGPPKFKQR 33 (87)
T 2ju4_A 6 PKAECRSATRVMGGPCTPRKGPPKCKQR 33 (87)
T ss_dssp CCCCCTTCSSSSCSSCCCSSSSCCCSSC
T ss_pred CCcccccCCccCCCCCCCCCCCCccchh
Confidence 4444445566667888888899888875
No 51
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=36.86 E-value=64 Score=28.27 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhhccccc---ccCChHHHHHHHHHHHHHHc
Q 023880 123 ISNYLATLETPLELRQEAWNLANDSLRTTLC---VRFKSEVVACGVVYAAARRF 173 (276)
Q Consensus 123 L~~~l~~l~~~~~l~~~A~~~l~ds~~t~l~---l~~~P~~IAaAaI~lA~~~~ 173 (276)
...+|+.|++++.+.+.||...+.+-..+-+ ..-.....-+||+|+|+...
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~ 59 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDL 59 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhcc
Confidence 3567889999999999999999997653222 22346677788899999754
No 52
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=29.76 E-value=43 Score=18.21 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhCcc
Q 023880 96 KMEMSRTERHILKEMGFV 113 (276)
Q Consensus 96 k~~Il~~E~~IL~~L~Fd 113 (276)
-++|.++|..|-++|.||
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 356778999999999997
Done!