BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023881
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 116/209 (55%), Positives = 149/209 (71%), Gaps = 11/209 (5%)
Query: 68 AVFEVQNNCSYTVWAAANPGGGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFDASNGTG 127
A F++ N C+YTVWAAA+PGGGR L GQSW + +P + RIW RT+C FDA NG G
Sbjct: 1 ATFDILNKCTYTVWAAASPGGGRRLDSGQSWTITVNPGTTN-ARIWGRTSCTFDA-NGRG 58
Query: 128 KCESGDCNGVLYCVSDGAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGTSSRCNK 187
KCE+GDCNG+L C G+PP TLAE++ +N+ + D+S+VDGFN+P++F G +
Sbjct: 59 KCETGDCNGLLECQGYGSPPNTLAEFALNQPNNLDYIDISLVDGFNIPMDFSGC-----R 113
Query: 188 VIKCRGDINGLCPTELRHPGGCNHPCTVFKNAQFCCTGSNSTATNCGPTTAYFKFFKDLC 247
I+C DING CP+EL+ PGGCN+PCTVFK ++CCT + CGPTT Y KFFKD C
Sbjct: 114 GIQCSVDINGQCPSELKAPGGCNNPCTVFKTNEYCCTDGPGS---CGPTT-YSKFFKDRC 169
Query: 248 PDAYSYSLDDAASTFSCSTGTDYKIVFCP 276
PDAYSY DD S F+C +GT+YK+ FCP
Sbjct: 170 PDAYSYPQDDKTSLFTCPSGTNYKVTFCP 198
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 233 bits (594), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 120/209 (57%), Positives = 148/209 (70%), Gaps = 9/209 (4%)
Query: 68 AVFEVQNNCSYTVWAAANPGGGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFDASNGTG 127
A FE+ N CSYTVWAAA PGGGR+L+QGQSW +N + GRIW RT C FD S G G
Sbjct: 1 ATFEIVNRCSYTVWAAAVPGGGRQLNQGQSWTINVNAGTTG-GRIWGRTGCSFDGS-GRG 58
Query: 128 KCESGDCNGVLYCVSDGAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGTSSRCNK 187
+C++GDC GVL C + G PP TLAE++ +N+ FFD+S+VDGFNVP++F TS C +
Sbjct: 59 RCQTGDCGGVLSCTAYGNPPNTLAEFALNQFNNLDFFDISLVDGFNVPMDFSPTSGGC-R 117
Query: 188 VIKCRGDINGLCPTELRHPGGCNHPCTVFKNAQFCCTGSNSTATNCGPTTAYFKFFKDLC 247
I+C DING CP L+ PGGCN+PCTVFK Q+CC NS A C PT Y +FFK C
Sbjct: 118 GIRCAADINGQCPGALKAPGGCNNPCTVFKTDQYCC---NSGA--CSPTD-YSQFFKRNC 171
Query: 248 PDAYSYSLDDAASTFSCSTGTDYKIVFCP 276
PDAYSY DD +TF+C GT+Y++VFCP
Sbjct: 172 PDAYSYPKDDQTTTFTCPGGTNYRVVFCP 200
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 214 bits (546), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 140/213 (65%), Gaps = 12/213 (5%)
Query: 68 AVFEVQNNCSYTVWAAANP-GGGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFDASNGT 126
A EV+NNC YTVWAA+ P GGGR L +GQ+WV+N P + R+W RTNC F+A+ G
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLDRGQTWVINA-PRGTKMARVWGRTNCNFNAA-GR 58
Query: 127 GKCESGDCNGVLYCVSDGAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGTSSRCN 186
G C++GDC GVL C G PP TLAEY+ + F+D+S+VDGFN+P+ F T+
Sbjct: 59 GTCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGG 118
Query: 187 K--VIKCRGDINGLCPTELRHPGGCNHPCTVFKNAQFCCTGSNSTATNCGPTTAYFKFFK 244
K I C +ING CP ELR PGGCN+PCT F Q+CC T CGP T + KFFK
Sbjct: 119 KCHAIHCTANINGECPRELRVPGGCNNPCTTFGGQQYCC-----TQGPCGP-TFFSKFFK 172
Query: 245 DLCPDAYSYSLDDAASTFSCSTG-TDYKIVFCP 276
CPDAYSY DD STF+C G T+Y+++FCP
Sbjct: 173 QRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCP 205
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 214 bits (544), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/211 (53%), Positives = 142/211 (67%), Gaps = 7/211 (3%)
Query: 68 AVFEVQNNCSYTVWAAANP-GGGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFDASNGT 126
AVF V N C +TVWAA+ P GGGR+L++G+SW + T P RIWART C+FDAS G
Sbjct: 1 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRI-TAPAGTTAARIWARTGCKFDAS-GR 58
Query: 127 GKCESGDCNGVLYCVSDGAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEF-KGTSSRC 185
G C +GDC GVL C G P TLAEY+ + +N+ FFD+S++DGFNVP+ F S C
Sbjct: 59 GSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGC 118
Query: 186 NKVIKCRGDINGLCPTELRHPGGCNHPCTVFKNAQFCCTGSNSTATNCGPTTAYFKFFKD 245
++ +C D+N CP ELR G CN+ C VFK ++CC G S A +C PT Y ++FK
Sbjct: 119 SRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVG--SAANDCHPTN-YSRYFKG 175
Query: 246 LCPDAYSYSLDDAASTFSCSTGTDYKIVFCP 276
CPDAYSY DDA STF+C GT+YK+VFCP
Sbjct: 176 QCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 213 bits (541), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 138/213 (64%), Gaps = 12/213 (5%)
Query: 68 AVFEVQNNCSYTVWAAANP-GGGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFDASNGT 126
A EV+NNC YTVWAA+ P GGGR L++GQ+WV+N P + RIW RT C F+A+ G
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLNRGQTWVINA-PRGTKMARIWGRTGCNFNAA-GR 58
Query: 127 GKCESGDCNGVLYCVSDGAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGTSSRCN 186
G C++GDC GVL C G PP TLAEY+ N+ F+D+S+VDGFN+P+ F T
Sbjct: 59 GTCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSGG 118
Query: 187 K--VIKCRGDINGLCPTELRHPGGCNHPCTVFKNAQFCCTGSNSTATNCGPTTAYFKFFK 244
K I C +ING CP L+ PGGCN+PCT F Q+CC T CGP T KFFK
Sbjct: 119 KCHAIHCTANINGECPRALKVPGGCNNPCTTFGGQQYCC-----TQGPCGP-TELSKFFK 172
Query: 245 DLCPDAYSYSLDDAASTFSCSTG-TDYKIVFCP 276
CPDAYSY DD STF+C G T+Y++VFCP
Sbjct: 173 KRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFCP 205
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 211 bits (537), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/214 (52%), Positives = 137/214 (64%), Gaps = 12/214 (5%)
Query: 67 AAVFEVQNNCSYTVWAAANP-GGGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFDASNG 125
+ VFEV NNC YTVWAAA P GGGR L +GQSW P + RIW RTNC FD + G
Sbjct: 1 SGVFEVHNNCPYTVWAAATPVGGGRRLERGQSWWFWAPPG-TKMARIWGRTNCNFDGA-G 58
Query: 126 TGKCESGDCNGVLYCVSDGAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGTSSRC 185
G C++GDC GVL C G PP TLAEY+ N+ F+D+SV+DGFN+P+ F T
Sbjct: 59 RGWCQTGDCGGVLECKGWGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGP 118
Query: 186 NKV--IKCRGDINGLCPTELRHPGGCNHPCTVFKNAQFCCTGSNSTATNCGPTTAYFKFF 243
K I+C +ING CP LR PGGCN+PCT F Q+CC T CGP T ++F
Sbjct: 119 GKCHGIQCTANINGECPGSLRVPGGCNNPCTTFGGQQYCC-----TQGPCGP-TELSRWF 172
Query: 244 KDLCPDAYSYSLDDAASTFSCSTG-TDYKIVFCP 276
K CPDAYSY DD STF+C++ TDYK++FCP
Sbjct: 173 KQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFCP 206
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 190 bits (483), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 140/216 (64%), Gaps = 18/216 (8%)
Query: 68 AVFEVQNNCSYTVWAAANPG------GGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFD 121
A FE+ N CSYTVWAAA+ G GGR+L+ G+SW +N +P N G+IWART+C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNG-GKIWARTDCYFD 59
Query: 122 ASNGTGKCESGDCNGVLYCVSDGAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGT 181
S G+G C++GDC G+L C G PP TLAE+S + D+S + GFNVP++F T
Sbjct: 60 DS-GSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQY-GKDYIDISNIKGFNVPMDFSPT 117
Query: 182 SSRCNKVIKCRGDINGLCPTELRHP-GGCNHPCTVFKNAQFCCTGSNSTATNCGPTTAYF 240
+ C + ++C DI G CP +L+ P GGCN CTVF+ +++CC T CGP T Y
Sbjct: 118 TRGC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCC-----TTGKCGP-TEYS 170
Query: 241 KFFKDLCPDAYSYSLDDAASTFSCSTGTDYKIVFCP 276
+FFK LCPDA+SY LD +T +C ++Y++ FCP
Sbjct: 171 RFFKRLCPDAFSYVLDK-PTTVTCPGSSNYRVTFCP 205
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 139/216 (64%), Gaps = 18/216 (8%)
Query: 68 AVFEVQNNCSYTVWAAANPG------GGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFD 121
A FE+ N CSYTVWAAA+ G GGR+L+ G+SW +N +P N G+IWART+C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNG-GKIWARTDCYFD 59
Query: 122 ASNGTGKCESGDCNGVLYCVSDGAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGT 181
S G+G C++GDC G+L C G PP TLAE+S + D+S + GFNVP+ F T
Sbjct: 60 DS-GSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQY-GKDYIDISNIKGFNVPMNFSPT 117
Query: 182 SSRCNKVIKCRGDINGLCPTELRHP-GGCNHPCTVFKNAQFCCTGSNSTATNCGPTTAYF 240
+ C + ++C DI G CP +L+ P GGCN CTVF+ +++CC T CGP T Y
Sbjct: 118 TRGC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCC-----TTGKCGP-TEYS 170
Query: 241 KFFKDLCPDAYSYSLDDAASTFSCSTGTDYKIVFCP 276
+FFK LCPDA+SY LD +T +C ++Y++ FCP
Sbjct: 171 RFFKRLCPDAFSYVLDK-PTTVTCPGSSNYRVTFCP 205
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 139/216 (64%), Gaps = 18/216 (8%)
Query: 68 AVFEVQNNCSYTVWAAANPG------GGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFD 121
A FE+ N CSYTVWAAA+ G GGR+L+ G+SW +N +P N G+IWART+C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNG-GKIWARTDCYFD 59
Query: 122 ASNGTGKCESGDCNGVLYCVSDGAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGT 181
S G+G C++GDC G+L C G PP TLAE+S + D+S + GFNVP+ F T
Sbjct: 60 DS-GSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQY-GKDYIDISNIKGFNVPMNFSPT 117
Query: 182 SSRCNKVIKCRGDINGLCPTELRHP-GGCNHPCTVFKNAQFCCTGSNSTATNCGPTTAYF 240
+ C + ++C DI G CP +L+ P GGCN CTVF+ +++CC T CGP T Y
Sbjct: 118 TRGC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCC-----TTGKCGP-TEYS 170
Query: 241 KFFKDLCPDAYSYSLDDAASTFSCSTGTDYKIVFCP 276
+FFK LCPDA+SY LD +T +C ++Y++ FCP
Sbjct: 171 RFFKRLCPDAFSYVLDK-PTTVTCPGSSNYRVTFCP 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 139/216 (64%), Gaps = 18/216 (8%)
Query: 68 AVFEVQNNCSYTVWAAANPG------GGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFD 121
A FE+ N CSYTVWAAA+ G GGR+L+ G+SW +N +P G+IWART+C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKG-GKIWARTDCYFD 59
Query: 122 ASNGTGKCESGDCNGVLYCVSDGAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGT 181
S G+G C++GDC G+L C G PP TLAE+S + D+S + GFNVP++F T
Sbjct: 60 DS-GSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQY-GKDYIDISNIKGFNVPMDFSPT 117
Query: 182 SSRCNKVIKCRGDINGLCPTELRHP-GGCNHPCTVFKNAQFCCTGSNSTATNCGPTTAYF 240
+ C + ++C DI G CP +L+ P GGCN CTVF+ +++CC T CGP T Y
Sbjct: 118 TRGC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCC-----TTGKCGP-TEYS 170
Query: 241 KFFKDLCPDAYSYSLDDAASTFSCSTGTDYKIVFCP 276
+FFK LCPDA+SY LD +T +C ++Y++ FCP
Sbjct: 171 RFFKRLCPDAFSYVLDK-PTTVTCPGSSNYRVTFCP 205
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 138/216 (63%), Gaps = 18/216 (8%)
Query: 68 AVFEVQNNCSYTVWAAANPG------GGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFD 121
A FE+ N CSYTVWAAA+ G GGR+L+ G+SW +N +P N G+IWART+C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNG-GKIWARTDCXFD 59
Query: 122 ASNGTGKCESGDCNGVLYCVSDGAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGT 181
S G+G C++GDC G+L C G PP TLAE+S + D+S + GFNVP+ F T
Sbjct: 60 DS-GSGICKTGDCGGLLRCKRFGRPPTTLAEFSLN-QXGKDYIDISNIKGFNVPMNFSPT 117
Query: 182 SSRCNKVIKCRGDINGLCPTELRHP-GGCNHPCTVFKNAQFCCTGSNSTATNCGPTTAYF 240
+ C + ++C DI G CP +L+ P GGCN CTVF+ +++CC T CGPT
Sbjct: 118 TRGC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCC-----TTGKCGPTEXS- 170
Query: 241 KFFKDLCPDAYSYSLDDAASTFSCSTGTDYKIVFCP 276
+FFK LCPDA+SY LD +T +C ++Y++ FCP
Sbjct: 171 RFFKRLCPDAFSYVLDK-PTTVTCPGSSNYRVTFCP 205
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 187 bits (475), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 137/216 (63%), Gaps = 18/216 (8%)
Query: 68 AVFEVQNNCSYTVWAAANPG------GGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFD 121
A FE+ N CSYTVWAAA+ G GGR+L+ G+SW +N +P G+IWART+C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKG-GKIWARTDCYFD 59
Query: 122 ASNGTGKCESGDCNGVLYCVSDGAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGT 181
S G G C +GDC G+L C G PP TLAE+S + D+S + GFNVP++F T
Sbjct: 60 DS-GRGICRTGDCGGLLQCKRFGRPPTTLAEFSLNQY-GKDYIDISNIKGFNVPMDFSPT 117
Query: 182 SSRCNKVIKCRGDINGLCPTELRHP-GGCNHPCTVFKNAQFCCTGSNSTATNCGPTTAYF 240
+ C + ++C DI G CP +L+ P GGCN CTVF+ +++CC T CGP T Y
Sbjct: 118 TRGC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCC-----TTGKCGP-TEYS 170
Query: 241 KFFKDLCPDAYSYSLDDAASTFSCSTGTDYKIVFCP 276
+FFK LCPDA+SY LD +T +C ++Y++ FCP
Sbjct: 171 RFFKRLCPDAFSYVLDK-PTTVTCPGSSNYRVTFCP 205
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 139/218 (63%), Gaps = 22/218 (10%)
Query: 68 AVFEVQNNCSYTVWAAANPG------GGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFD 121
A FE+ N CS TVWAAA+ G GGR+L+ G+SW +N +P N G+IWART+C FD
Sbjct: 1 ATFEIVNRCSXTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNG-GKIWARTDCXFD 59
Query: 122 ASNGTGKCESGDCNGVLYCVSDGAPPVTLAEYSFQ--GVDNMGFFDVSVVDGFNVPIEFK 179
S G+G C++GDC G+L C G PP TLAE+S G D + D+S + GFNVP+ F
Sbjct: 60 DS-GSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQXGKDXI---DISNIKGFNVPMNFS 115
Query: 180 GTSSRCNKVIKCRGDINGLCPTELRHP-GGCNHPCTVFKNAQFCCTGSNSTATNCGPTTA 238
T+ C + ++C DI G CP +L+ P GGCN CTVF+ +++CC T CGPT
Sbjct: 116 PTTRGC-RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCC-----TTGKCGPTEX 169
Query: 239 YFKFFKDLCPDAYSYSLDDAASTFSCSTGTDYKIVFCP 276
+FFK LCPDA+SY LD +T +C ++Y++ FCP
Sbjct: 170 S-RFFKRLCPDAFSYVLDK-PTTVTCPGSSNYRVTFCP 205
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 137 bits (344), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 118/227 (51%), Gaps = 23/227 (10%)
Query: 68 AVFEVQNNCSYTVWAAANPGG--------GRELHQGQSWVVNTDPNFNDIGRIWARTNCR 119
A +NNC Y VW G EL S+ ++T +N GR WART C
Sbjct: 1 ATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWN--GRFWARTGCS 58
Query: 120 FDASNGTGKCESGDC-NGVLYCVSDGA-PPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIE 177
DAS G C + DC +G + C +GA PP TLAE++ F+DVS+VDGFN+P+
Sbjct: 59 TDAS-GKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMS 117
Query: 178 F--KGTSSRCNKVIKCRGDINGLCPTELRHPG------GCNHPCTVFKNAQFCCTGSNST 229
+G + C K C ++N +CP+EL+ G C C F Q+CCT +T
Sbjct: 118 VTPQGGTGDC-KTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNT 176
Query: 230 ATNCGPTTAYFKFFKDLCPDAYSYSLDDAASTFSCSTGTDYKIVFCP 276
C PT Y + F + CPDAYSY+ DD TF+C+ G +Y I FCP
Sbjct: 177 PETCPPTN-YSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 127 bits (319), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 113/227 (49%), Gaps = 23/227 (10%)
Query: 68 AVFEVQNNCSYTVWAAANPGG--------GRELHQGQSWVVNTDPNFNDIGRIWARTNCR 119
A NNC TVW G G EL S V+ ++ GR W RT C
Sbjct: 1 AKITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWS--GRFWGRTRCS 58
Query: 120 FDASNGTGKCESGDC-NGVLYCVSDGA-PPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIE 177
DA+ G CE+ DC +G + C GA PP TL E + ++DVS+VDGFN+P+
Sbjct: 59 TDAA-GKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMS 117
Query: 178 F--KGTSSRCNKVIKCRGDINGLCPTELRHPGG------CNHPCTVFKNAQFCCTGSNST 229
+G + C K C ++N +CP L+ C C F ++++CCT N+T
Sbjct: 118 VAPQGGTGEC-KPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNT 176
Query: 230 ATNCGPTTAYFKFFKDLCPDAYSYSLDDAASTFSCSTGTDYKIVFCP 276
C P T Y + F+ CP AYSY+ DD STF+CS G DY I FCP
Sbjct: 177 PETC-PPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 222
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 69/132 (52%), Gaps = 15/132 (11%)
Query: 68 AVFEVQNNCSYTVWAA-----ANPGGGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFDA 122
A + N C +TVW A A GGG ELH G SW ++T + IW RT C FD
Sbjct: 1 APLTITNRCHFTVWPAVALVLAQGGGGTELHPGASWSLDTPVIGSQY--IWGRTGCSFDR 58
Query: 123 SNGTGKCESGDCNG-VLYCVSDGAPPVTLAEYS-FQGVDNMGFFDVSVVDGFNVPIEFKG 180
+ G G+C++GDC G L C + A P T+AE S QG N + S + GFNVP+ K
Sbjct: 59 A-GKGRCQTGDCGGSSLTCGGNPAVPTTMAEVSVLQG--NYTYGVTSTLKGFNVPMNLKC 115
Query: 181 TSSRCNKVIKCR 192
+S + CR
Sbjct: 116 SS---GDALPCR 124
>pdb|1YKM|B Chain B, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|D Chain D, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|F Chain F, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|H Chain H, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|J Chain J, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|L Chain L, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKN|B Chain B, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|D Chain D, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|F Chain F, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|H Chain H, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|J Chain J, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|L Chain L, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
Length = 238
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 75 NCSYTVWAAANPGGGRELHQGQSWVVNTDPNFNDIGR 111
N +W A GGRE H+ ++ DPNF +GR
Sbjct: 94 NTLVEMWQAN--AGGRERHKNDRYLAPLDPNFGGVGR 128
>pdb|1YKO|B Chain B, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|D Chain D, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|F Chain F, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|H Chain H, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|J Chain J, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|L Chain L, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKP|B Chain B, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|D Chain D, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|F Chain F, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|H Chain H, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|J Chain J, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|L Chain L, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
Length = 238
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 75 NCSYTVWAAANPGGGRELHQGQSWVVNTDPNFNDIGR 111
N +W A GGR H+ ++ DPNF +GR
Sbjct: 94 NTLVEMWQAN--AGGRHRHKNDRYLAPLDPNFGGVGR 128
>pdb|3LFM|A Chain A, Crystal Structure Of The Fat Mass And Obesity Associated
(Fto) Protein Reveals Basis For Its Substrate
Specificity
Length = 495
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 81 WAAANPGGGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFDASNGTGKCESGDCNGVL 138
W PG LHQG + + D N + A + RF +++ +C +G + +L
Sbjct: 268 WDIETPGLAIPLHQGDCYFMLDDLNATHQHCVLAGSQPRFSSTHRVAECSTGTLDYIL 325
>pdb|3MI1|M Chain M, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI1|N Chain N, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI1|O Chain O, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
Length = 238
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 75 NCSYTVWAAANPGGGRELHQGQSWVVNTDPNFNDIGR 111
N +W A GGR H+ ++ DPNF +GR
Sbjct: 94 NTLVEMWQAN--AGGRYRHKNDRYLAPLDPNFGGVGR 128
>pdb|3T63|M Chain M, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T63|N Chain N, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T63|O Chain O, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
Length = 238
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 75 NCSYTVWAAANPGGGRELHQGQSWVVNTDPNFNDIGR 111
N +W A GGR H+ ++ DPNF +GR
Sbjct: 94 NTLVEMWQAN--AGGRYRHKNDRYLAPLDPNFGGVGR 128
>pdb|2PCD|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|3PCF|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCH|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCL|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCM|M Chain M, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|N Chain N, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|O Chain O, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|P Chain P, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|Q Chain Q, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|R Chain R, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCA|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCI|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCJ|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCK|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCN|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCB|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCC|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCE|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCG|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3T67|M Chain M, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T67|N Chain N, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T67|O Chain O, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
Length = 238
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 75 NCSYTVWAAANPGGGRELHQGQSWVVNTDPNFNDIGR 111
N +W A GGR H+ ++ DPNF +GR
Sbjct: 94 NTLVEMWQAN--AGGRYRHKNDRYLAPLDPNFGGVGR 128
>pdb|3MFL|M Chain M, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MFL|N Chain N, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MFL|O Chain O, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|M Chain M, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|N Chain N, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|O Chain O, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|P Chain P, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|Q Chain Q, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|R Chain R, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV4|M Chain M, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV4|N Chain N, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV4|O Chain O, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV6|M Chain M, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV6|N Chain N, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV6|O Chain O, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
Length = 238
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 75 NCSYTVWAAANPGGGRELHQGQSWVVNTDPNFNDIGR 111
N +W A GGR H+ ++ DPNF +GR
Sbjct: 94 NTLVEMWQAN--AGGRYRHKNDRYLAPLDPNFGGVGR 128
>pdb|3PCD|M Chain M, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|N Chain N, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|O Chain O, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|P Chain P, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|Q Chain Q, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|R Chain R, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3LMX|M Chain M, Tyrosine 447 Of Protocatechuate 34,-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LMX|N Chain N, Tyrosine 447 Of Protocatechuate 34,-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LMX|O Chain O, Tyrosine 447 Of Protocatechuate 34,-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|M Chain M, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|N Chain N, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|O Chain O, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|P Chain P, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|Q Chain Q, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|R Chain R, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LXV|M Chain M, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LXV|N Chain N, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LXV|O Chain O, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
Length = 238
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 75 NCSYTVWAAANPGGGRELHQGQSWVVNTDPNFNDIGR 111
N +W A GGR H+ ++ DPNF +GR
Sbjct: 94 NTLVEMWQAN--AGGRYRHKNDRYLAPLDPNFGGVGR 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,498,342
Number of Sequences: 62578
Number of extensions: 363950
Number of successful extensions: 627
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 26
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)