Query 023881
Match_columns 276
No_of_seqs 151 out of 686
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:20:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 9.3E-80 2E-84 553.0 17.2 202 69-275 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 7.3E-79 1.6E-83 547.0 17.8 203 70-276 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 6.4E-79 1.4E-83 550.0 17.0 202 70-276 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 3.1E-75 6.6E-80 522.0 8.5 198 74-276 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 1.9E-58 4.2E-63 396.7 14.9 149 70-275 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 2.5E-53 5.3E-58 363.1 14.6 150 70-276 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 1.1E-48 2.4E-53 335.1 14.0 144 70-274 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 98.0 0.00019 4.1E-09 62.4 12.9 41 145-185 71-114 (155)
9 cd09220 GH64-GluB-like glycosi 85.3 2 4.4E-05 42.3 6.1 77 94-181 62-145 (369)
10 cd09214 GH64-like glycosyl hyd 67.4 5.8 0.00012 38.4 3.5 31 150-182 125-155 (319)
11 cd09214 GH64-like glycosyl hyd 66.1 4 8.7E-05 39.4 2.1 24 235-258 274-299 (319)
12 cd09216 GH64-LPHase-like glyco 63.4 4.8 0.0001 39.5 2.1 77 93-182 60-143 (353)
13 PF07172 GRP: Glycine rich pro 61.0 6 0.00013 31.7 1.9 27 44-70 1-28 (95)
14 cd09216 GH64-LPHase-like glyco 53.7 15 0.00032 36.2 3.6 24 235-258 308-333 (353)
15 TIGR00192 urease_beta urease, 52.7 38 0.00083 27.8 5.3 53 63-116 17-94 (101)
16 cd00407 Urease_beta Urease bet 52.7 39 0.00084 27.7 5.3 53 63-116 17-94 (101)
17 cd09220 GH64-GluB-like glycosi 52.3 16 0.00035 36.1 3.7 24 235-258 319-344 (369)
18 PRK13202 ureB urease subunit b 45.7 58 0.0013 26.9 5.3 50 66-116 21-95 (104)
19 PRK13203 ureB urease subunit b 41.4 58 0.0013 26.7 4.7 53 63-116 17-94 (102)
20 PRK13204 ureB urease subunit b 41.3 67 0.0015 28.3 5.4 54 63-117 40-118 (159)
21 PRK13201 ureB urease subunit b 40.6 70 0.0015 27.5 5.3 53 63-116 17-94 (136)
22 PF00947 Pico_P2A: Picornaviru 38.5 14 0.0003 31.5 0.7 17 125-141 83-99 (127)
23 PRK13198 ureB urease subunit b 37.4 83 0.0018 27.7 5.3 53 63-116 45-122 (158)
24 PRK02710 plastocyanin; Provisi 35.7 1.5E+02 0.0033 23.9 6.5 20 82-102 42-61 (119)
25 PRK13986 urease subunit alpha; 33.8 93 0.002 28.9 5.3 54 63-117 122-200 (225)
26 PRK13192 bifunctional urease s 33.6 96 0.0021 28.5 5.3 53 63-116 126-203 (208)
27 PRK13205 ureB urease subunit b 32.9 1.1E+02 0.0023 27.1 5.3 54 63-117 17-95 (162)
28 cd05468 pVHL von Hippel-Landau 31.9 95 0.0021 26.3 4.8 36 66-101 7-47 (141)
29 PF00699 Urease_beta: Urease b 31.6 88 0.0019 25.6 4.3 52 63-115 16-92 (100)
30 TIGR03096 nitroso_cyanin nitro 31.3 1.3E+02 0.0028 25.8 5.5 28 89-120 93-120 (135)
31 PF05991 NYN_YacP: YacP-like N 29.0 18 0.0004 31.2 -0.0 10 168-177 2-11 (166)
32 PF04202 Mfp-3: Foot protein 3 28.6 43 0.00093 25.6 1.9 24 44-67 1-24 (71)
33 PF11142 DUF2917: Protein of u 26.1 72 0.0016 23.5 2.7 24 90-114 2-29 (63)
34 PHA03094 dUTPase; Provisional 25.8 67 0.0015 27.2 2.9 30 89-120 35-70 (144)
35 PF08888 HopJ: HopJ type III e 20.7 15 0.00033 30.5 -2.0 12 4-15 48-59 (111)
36 PLN00115 pollen allergen group 20.4 1.1E+02 0.0023 25.6 3.0 40 44-85 1-42 (118)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=9.3e-80 Score=553.04 Aligned_cols=202 Identities=44% Similarity=0.993 Sum_probs=191.9
Q ss_pred EEEEEeCCCCceeeeecC--------CCCeeecCCCeEEEEcCCCCCcceeeeeecccCCCCCCCCCCccCCCCCCceec
Q 023881 69 VFEVQNNCSYTVWAAANP--------GGGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFDASNGTGKCESGDCNGVLYC 140 (276)
Q Consensus 69 t~ti~N~C~~tVWpg~~p--------~~G~~L~pG~s~s~~vp~~~W~sGriWgRTgCs~~~~~G~~~C~TGdCgg~l~C 140 (276)
+|||+|||+||||||+++ ++||+|+||++++|++|++ | +|||||||||++|+. |+++|+||||+|.++|
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~-W-sGriWaRTgC~~~~~-g~~~C~TGDCgg~l~C 77 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSG-W-SGRFWGRTGCSFDSS-GKGSCATGDCGGGLEC 77 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCC-c-ceeeeeccCCCCCCC-CccccccCCCCCeeec
Confidence 599999999999999964 4799999999999999999 9 899999999999987 9999999999999999
Q ss_pred CCC-CCCCcceeEEeeeCCCCccceeeecccCcCCCeeeeecC--CCCcCCccCccccccCCCcCCccC------CCCcC
Q 023881 141 VSD-GAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGTS--SRCNKVIKCRGDINGLCPTELRHP------GGCNH 211 (276)
Q Consensus 141 ~g~-G~pPaTLAEftl~~~~~~d~YDVSlVDGfNlPm~I~P~~--g~C~~~~~C~~dln~~CP~eL~v~------~gC~S 211 (276)
++. |.||+|||||||++.+++|||||||||||||||+|+|++ +.| +.++|.+|||+.||+||+++ .||+|
T Consensus 78 ~g~~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C-~~~~C~~din~~CP~~L~v~~~~g~vv~C~S 156 (219)
T cd09218 78 NGAGGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGSGGC-RTAGCVADLNAVCPAELQVKNSGGRVVACKS 156 (219)
T ss_pred CCCCCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCCCCC-CCCcccCcccccCCHHHeeccCCCcEeeecC
Confidence 985 489999999999887789999999999999999999976 369 89999999999999999986 27999
Q ss_pred cccccCCCccccCCCCCCCCCCCCChHhHHHHHhhCCCCccCCCCCCCCceeeCCCCceEEEec
Q 023881 212 PCTVFKNAQFCCTGSNSTATNCGPTTAYFKFFKDLCPDAYSYSLDDAASTFSCSTGTDYKIVFC 275 (276)
Q Consensus 212 aC~a~~~~~yCC~G~y~~p~~C~pt~~ys~~FK~~CP~AYsYa~DD~tstftC~~~~~Y~VtFC 275 (276)
||.+|++|||||+|+|++|++|+|+ .||++||++||+||+|||||++++|+|+++++|+|+||
T Consensus 157 aC~~f~~~~~CC~g~~~~p~~C~pt-~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 157 ACLAFNTDEYCCRGAYGTPETCKPT-TYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred HHHhhCCccceecCCCCCCCcCCCc-chhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 9999999999999999999999999 99999999999999999999999999998899999999
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=7.3e-79 Score=547.04 Aligned_cols=203 Identities=54% Similarity=1.149 Sum_probs=192.5
Q ss_pred EEEEeCCCCceeeeecC-------CCCeeecCCCeEEEEcCCCCCcceeeeeecccCCCCCCCCCCccCCCCCCceecCC
Q 023881 70 FEVQNNCSYTVWAAANP-------GGGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFDASNGTGKCESGDCNGVLYCVS 142 (276)
Q Consensus 70 ~ti~N~C~~tVWpg~~p-------~~G~~L~pG~s~s~~vp~~~W~sGriWgRTgCs~~~~~G~~~C~TGdCgg~l~C~g 142 (276)
|||+|||+||||||+++ ++||+|++|+++++.+|++ |++|||||||||++|++ |+++|+||||+|.++|++
T Consensus 1 fti~N~C~~tVWp~~~~~g~~~l~~gGf~L~~g~s~~~~~p~~-w~sGriW~RtgC~~d~~-G~~~C~TGdCgG~l~C~g 78 (218)
T smart00205 1 FEFVNNCPYTVWAAALPSGKPQLSGGGFELNSGASWQLDAPPG-TKMGRIWARTGCNFDAS-GRGRCATGDCGGVLQCNG 78 (218)
T ss_pred CEEEcCCCCceeceecCCCCcccCCCcEecCCCCeEEEECCCC-CccceEecccCCCcCCC-CccccccCCCCCeeecCC
Confidence 79999999999999975 3799999999999999999 96699999999999987 999999999999999998
Q ss_pred CC-CCCcceeEEeeeCCCCccceeeecccCcCCCeeeeecC--CCCcCCccCccccccCCCcCCccC-----CCCcCccc
Q 023881 143 DG-APPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGTS--SRCNKVIKCRGDINGLCPTELRHP-----GGCNHPCT 214 (276)
Q Consensus 143 ~G-~pPaTLAEftl~~~~~~d~YDVSlVDGfNlPm~I~P~~--g~C~~~~~C~~dln~~CP~eL~v~-----~gC~SaC~ 214 (276)
.| +||+|||||||++.+++|||||||||||||||+|.|++ +.| +..+|.+|||+.||+||+++ .||+|||.
T Consensus 79 ~gg~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C-~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~ 157 (218)
T smart00205 79 WGGRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSGDC-KGAGCTADLNAQCPAELQVPGGGSVVACNSACT 157 (218)
T ss_pred CCCCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCCCc-CCCcCCCcccccCCHHHccccCCcccccccHhh
Confidence 54 99999999999987789999999999999999999974 459 99999999999999999996 36999999
Q ss_pred ccCCCccccCCCCCCCCCCCCChHhHHHHHhhCCCCccCCCCCCCCceeeCCCCceEEEecC
Q 023881 215 VFKNAQFCCTGSNSTATNCGPTTAYFKFFKDLCPDAYSYSLDDAASTFSCSTGTDYKIVFCP 276 (276)
Q Consensus 215 a~~~~~yCC~G~y~~p~~C~pt~~ys~~FK~~CP~AYsYa~DD~tstftC~~~~~Y~VtFCP 276 (276)
+|++|||||+|+|++|++|+|+ .||++||++||+||+||+||++++|+|+++++|+|+|||
T Consensus 158 ~f~~~~yCC~g~~~~~~~C~pt-~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 158 VFGTDQYCCTGGQNNPETCPPT-NYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred ccCCCcceecCCCCCCCCCCCc-chhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 9999999999999999999999 999999999999999999999999999998999999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=6.4e-79 Score=549.98 Aligned_cols=202 Identities=38% Similarity=0.839 Sum_probs=187.9
Q ss_pred EEEEeCCCCceeeeecC-----------CCCeeecCCCeEEEEcCCCCCcceeeeeecccCCCCCCCCCCccCCCCCCce
Q 023881 70 FEVQNNCSYTVWAAANP-----------GGGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFDASNGTGKCESGDCNGVL 138 (276)
Q Consensus 70 ~ti~N~C~~tVWpg~~p-----------~~G~~L~pG~s~s~~vp~~~W~sGriWgRTgCs~~~~~G~~~C~TGdCgg~l 138 (276)
|||+|||+||||||+++ .+||+|+||++++|.+|++ |++|||||||||+||+.+|+++|+||||||.+
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~-w~~GRiWgRTgC~~d~~~G~~~C~TGdCgg~l 79 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDN-WTAGRIWARTGCDFSDNPGPFSCLTGGCGGGL 79 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCC-CcccceeccCCCCCCCCCCCCCcccCCCCcee
Confidence 79999999999999863 3799999999999999999 94499999999999953389999999999999
Q ss_pred ecCCCCCCCcceeEEeeeCCCCccceeeecccCcCCCeeeeecCCCCcCCccCccccccCCCcCCccC-------CCCcC
Q 023881 139 YCVSDGAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGTSSRCNKVIKCRGDINGLCPTELRHP-------GGCNH 211 (276)
Q Consensus 139 ~C~g~G~pPaTLAEftl~~~~~~d~YDVSlVDGfNlPm~I~P~~g~C~~~~~C~~dln~~CP~eL~v~-------~gC~S 211 (276)
+|++.|.||+|||||+|++. ++|||||||||||||||+|.|.. .| +..+|.+|||..||.||+++ .||+|
T Consensus 80 ~C~~~g~pP~TlaEftL~~~-~~D~YdVSlVDGfNlP~~i~P~~-~C-~~~~C~~dln~~CP~~L~v~~~~~g~~vaC~S 156 (229)
T cd09219 80 TCENSDQPPASLAEFTLIGG-KEDNYDISLVDGFNIPLNITNNI-TC-PQPQCQVDLNVLCPALLRGPLDQKGVNLGCIS 156 (229)
T ss_pred ecCCCCCCCcceeeEEecCC-CCceeEEEEecccccceEeccCC-CC-CCCcccCCCcccCCHHHccccCCCCccceecC
Confidence 99987899999999999876 78999999999999999999954 79 89999999999999999985 37999
Q ss_pred cccc-cCC--CccccCCCCCCCCCCCC--ChHhHHHHHhhCCCCccCCCCCCC--CceeeCC--CCceEEEecC
Q 023881 212 PCTV-FKN--AQFCCTGSNSTATNCGP--TTAYFKFFKDLCPDAYSYSLDDAA--STFSCST--GTDYKIVFCP 276 (276)
Q Consensus 212 aC~a-~~~--~~yCC~G~y~~p~~C~p--t~~ys~~FK~~CP~AYsYa~DD~t--stftC~~--~~~Y~VtFCP 276 (276)
||++ |++ |||||+|+|++|++|+| + .||++||++||+||||||||++ ++|||++ +++|+|+|||
T Consensus 157 aC~a~~~~~~~~yCC~g~~~~p~~C~p~~t-~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 157 PCNRDKNHDDSPSCCTGSHNKPETCPQSGV-GNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred HhhhhccCCCCcccccCCCCCcCCCCCCcc-cHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 9999 655 99999999999999999 7 8999999999999999999999 6799998 7999999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=3.1e-75 Score=521.99 Aligned_cols=198 Identities=49% Similarity=1.080 Sum_probs=164.3
Q ss_pred eCCCCceeeeecCC--------CCeeecCCCeEEEEcCCCCCcceeeeeecccCCCCCCCCCCccCCCCCCceecCC-CC
Q 023881 74 NNCSYTVWAAANPG--------GGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFDASNGTGKCESGDCNGVLYCVS-DG 144 (276)
Q Consensus 74 N~C~~tVWpg~~p~--------~G~~L~pG~s~s~~vp~~~W~sGriWgRTgCs~~~~~G~~~C~TGdCgg~l~C~g-~G 144 (276)
|||+||||||+++. +||+|++|+++++.+|++ | +|||||||||++++. |+++|+||||+|.++|++ .+
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~-W-sGriW~RTgC~~~~~-g~~~C~TGdCgg~~~C~~~~~ 77 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAG-W-SGRIWARTGCSFDGG-GRGSCATGDCGGRLECNGAGG 77 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TT-E-SEEEEEEEEEEEETT-SBEEEEES-STTBSSSSS---
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCcc-c-cceeeecCCCcCCCC-CCcccccCCCCcccccccccC
Confidence 99999999999862 689999999999999999 9 999999999999987 899999999999999998 46
Q ss_pred CCCcceeEEeeeCCCCccceeeecccCcCCCeeeeec-CCCCcCCccCccccccCCCcCCccC-----CCCcCcccccCC
Q 023881 145 APPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGT-SSRCNKVIKCRGDINGLCPTELRHP-----GGCNHPCTVFKN 218 (276)
Q Consensus 145 ~pPaTLAEftl~~~~~~d~YDVSlVDGfNlPm~I~P~-~g~C~~~~~C~~dln~~CP~eL~v~-----~gC~SaC~a~~~ 218 (276)
.+|+|||||+|++.+++|||||||||||||||+|+|. +..| +..+|.+||+..||.||+++ .+|+|+|.+|++
T Consensus 78 ~~P~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~~~~C-~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~ 156 (213)
T PF00314_consen 78 SPPATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSGGSNC-RSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNT 156 (213)
T ss_dssp -SS--EEEEEEEETTTEEEEEEESTT-BSS-EEEEESSSSSS-SSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-S
T ss_pred cccceeEEEEeccCCCcceEEEEeeeeecCChhhccCCCCcc-ccccCccccccccchhheeeccCceeeecccceeccC
Confidence 9999999999987788999999999999999999999 4689 99999999999999999984 479999999999
Q ss_pred CccccCCCCCCCCCCCCChHhHHHHHhhCCCCccCCCCCCCCceeeCCCCceEEEecC
Q 023881 219 AQFCCTGSNSTATNCGPTTAYFKFFKDLCPDAYSYSLDDAASTFSCSTGTDYKIVFCP 276 (276)
Q Consensus 219 ~~yCC~G~y~~p~~C~pt~~ys~~FK~~CP~AYsYa~DD~tstftC~~~~~Y~VtFCP 276 (276)
++|||+|+|+++++|+|+ .|+++||++||+||+|||||++|+|+|+++++|+|||||
T Consensus 157 ~~~CC~g~~~~~~~C~~~-~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 157 DEYCCRGAYNTPDTCPPT-NYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HHHHTTCCS-TTSCS----HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred CccccccccCCCcccccc-hhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 999999999999999999 999999999999999999999999999999999999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=1.9e-58 Score=396.75 Aligned_cols=149 Identities=46% Similarity=0.998 Sum_probs=136.9
Q ss_pred EEEEeCCCCceeeeecC-------CCCeeecCCCeEEEEcCCCCCcceeeeeecccCCCC-CCCCCCccCCCCCCceecC
Q 023881 70 FEVQNNCSYTVWAAANP-------GGGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFDA-SNGTGKCESGDCNGVLYCV 141 (276)
Q Consensus 70 ~ti~N~C~~tVWpg~~p-------~~G~~L~pG~s~s~~vp~~~W~sGriWgRTgCs~~~-~~G~~~C~TGdCgg~l~C~ 141 (276)
|||+|||+||||||+++ .+||+|+||+++++.+|++ | +|||||||+|++|+ . |+++|+||||+|.++|+
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~~~~gGf~L~~g~s~~~~~p~~-w-sGriWgRTgC~~~~~~-g~~~C~TGdCgg~l~C~ 77 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKGPYTGGFELNPGETKSFDVSAG-W-QGRIWARTNCSFNANS-GGNACLTGDCNGGLNCQ 77 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCCCCCCCEecCCCCeeEEecCCC-C-eEeeecccccccCCCC-CCCCcccCCCCceeecC
Confidence 78999999999999975 4799999999999999999 9 89999999999998 5 89999999999999999
Q ss_pred CCCCCCcceeEEeeeCCCCccceeeecccCcCCCeeeeecCCCCcCCccCccccccCCCcCCccCCCCcCcccccCCCcc
Q 023881 142 SDGAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGTSSRCNKVIKCRGDINGLCPTELRHPGGCNHPCTVFKNAQF 221 (276)
Q Consensus 142 g~G~pPaTLAEftl~~~~~~d~YDVSlVDGfNlPm~I~P~~g~C~~~~~C~~dln~~CP~eL~v~~gC~SaC~a~~~~~y 221 (276)
+.|.||+|||||||++.+++|||||||||||||||+|+|+++.| +..+|.+
T Consensus 78 g~g~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~~~C-~~~~C~~---------------------------- 128 (157)
T cd09215 78 GTGGPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQPGEC-PTPICAA---------------------------- 128 (157)
T ss_pred CCCCCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCCCCC-CCCcccc----------------------------
Confidence 97799999999999987788999999999999999999976556 4333331
Q ss_pred ccCCCCCCCCCCCCChHhHHHHHhhCCCCccCCCCCCCCceeeCCCCceEEEec
Q 023881 222 CCTGSNSTATNCGPTTAYFKFFKDLCPDAYSYSLDDAASTFSCSTGTDYKIVFC 275 (276)
Q Consensus 222 CC~G~y~~p~~C~pt~~ys~~FK~~CP~AYsYa~DD~tstftC~~~~~Y~VtFC 275 (276)
||+||+|||||++++|+|+++++|+|+||
T Consensus 129 -------------------------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 129 -------------------------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred -------------------------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 99999999999999999999899999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=2.5e-53 Score=363.15 Aligned_cols=150 Identities=55% Similarity=1.192 Sum_probs=135.9
Q ss_pred EEEEeCCCCceeeeecC-CCCeeecCCCeEEEEcCCCCCcceeeeeecccCCCCCCCCCCccCCCCCCceecCCCCCCCc
Q 023881 70 FEVQNNCSYTVWAAANP-GGGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFDASNGTGKCESGDCNGVLYCVSDGAPPV 148 (276)
Q Consensus 70 ~ti~N~C~~tVWpg~~p-~~G~~L~pG~s~s~~vp~~~W~sGriWgRTgCs~~~~~G~~~C~TGdCgg~l~C~g~G~pPa 148 (276)
|+|+|||+||||||++| ++||+|+||+++++.+|++.| +|||||||+|++|++ |+++|+||||||.++|++.|.||+
T Consensus 1 ~~~~N~C~~tvWp~~~~~~gG~~L~~g~~~~~~~p~~~w-~griW~RTgC~~~~~-g~~~C~TGdCgg~l~C~~~g~pp~ 78 (151)
T cd09217 1 FTITNNCGYTVWPAATPVGGGRQLNPGQSWTIDVPAGTA-GGRIWGRTGCSFDAS-GRGSCQTGDCGGVLSCTGSGKPPA 78 (151)
T ss_pred CEEEeCCCCcccceEecCCCCEeCCCCCeEEEEcCCCCc-eEEEeeecCCCcCCC-CCCcccccCCCCeeecCCCCCCCc
Confidence 78999999999999998 689999999999999999757 899999999999988 999999999999999998789999
Q ss_pred ceeEEeeeCCCCccceeeecccCcCCCeeeeecCCCCcCCccCccccccCCCcCCccCCCCcCcccccCCCccccCCCCC
Q 023881 149 TLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGTSSRCNKVIKCRGDINGLCPTELRHPGGCNHPCTVFKNAQFCCTGSNS 228 (276)
Q Consensus 149 TLAEftl~~~~~~d~YDVSlVDGfNlPm~I~P~~g~C~~~~~C~~dln~~CP~eL~v~~gC~SaC~a~~~~~yCC~G~y~ 228 (276)
||+||+|+. +++||||||+||||||||+|.|++++| +.++|..
T Consensus 79 Tl~E~tl~~-~~~d~YdISlVdG~NlP~~i~P~~~~C-~~~~C~~----------------------------------- 121 (151)
T cd09217 79 TLAEYTLNQ-SGQDFYDISLVDGFNVPMDFSPTGGGC-HAIPCAA----------------------------------- 121 (151)
T ss_pred eeEEEEecC-CCCccEEEEeecccccceEEecCCCCC-CCCcCCC-----------------------------------
Confidence 999999986 578999999999999999999976556 4333331
Q ss_pred CCCCCCCChHhHHHHHhhCCCCccCCCCCCCCceeeCCCCceEEEecC
Q 023881 229 TATNCGPTTAYFKFFKDLCPDAYSYSLDDAASTFSCSTGTDYKIVFCP 276 (276)
Q Consensus 229 ~p~~C~pt~~ys~~FK~~CP~AYsYa~DD~tstftC~~~~~Y~VtFCP 276 (276)
. ||+||+|++|| .++|+|+.+++|+|+|||
T Consensus 122 ---------d--------C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 ---------N--------CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred ---------C--------CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 1 99999999995 799999999999999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=1.1e-48 Score=335.10 Aligned_cols=144 Identities=38% Similarity=0.702 Sum_probs=128.5
Q ss_pred EEEEeCCCCceeeeecC--------CCCeeecCCCeEEEEcCCCCCcceeeeeecccCCCCCCCCCCccCCCCCCceecC
Q 023881 70 FEVQNNCSYTVWAAANP--------GGGRELHQGQSWVVNTDPNFNDIGRIWARTNCRFDASNGTGKCESGDCNGVLYCV 141 (276)
Q Consensus 70 ~ti~N~C~~tVWpg~~p--------~~G~~L~pG~s~s~~vp~~~W~sGriWgRTgCs~~~~~G~~~C~TGdCgg~l~C~ 141 (276)
|||+|||+|||||++++ .+||+|+||++++|++|++ | +|||||||||+++.. |++.|+||||++ +.|.
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~-w-sGRIW~RtgC~~~~~-g~g~C~TGdcgg-~~c~ 76 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKG-F-SGRIWFRTGCSMDFS-GTTGCLTQDPGV-VNPT 76 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCC-c-eEEEEEecCCcccCC-CCccccccCCCC-cccC
Confidence 68999999999999975 2799999999999999999 9 899999999999987 899999999998 6777
Q ss_pred C-CCCCCcceeEEeeeCCCCccceeeecccCcCCCeeeeecCCCCcCCccCccccccCCCcCCccCCCCcCcccccCCCc
Q 023881 142 S-DGAPPVTLAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGTSSRCNKVIKCRGDINGLCPTELRHPGGCNHPCTVFKNAQ 220 (276)
Q Consensus 142 g-~G~pPaTLAEftl~~~~~~d~YDVSlVDGfNlPm~I~P~~g~C~~~~~C~~dln~~CP~eL~v~~gC~SaC~a~~~~~ 220 (276)
+ .+.||+|||||||++.+++|||||||||||||||+|+|..+.
T Consensus 77 g~~g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~------------------------------------ 120 (153)
T cd08961 77 DPNRDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGD------------------------------------ 120 (153)
T ss_pred CCCCCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCC------------------------------------
Confidence 6 569999999999987668899999999999999999996421
Q ss_pred cccCCCCCCCCCCCCChHhHHHHHhhCCCCccCCCCCCCCceeeCCCCceEEEe
Q 023881 221 FCCTGSNSTATNCGPTTAYFKFFKDLCPDAYSYSLDDAASTFSCSTGTDYKIVF 274 (276)
Q Consensus 221 yCC~G~y~~p~~C~pt~~ys~~FK~~CP~AYsYa~DD~tstftC~~~~~Y~VtF 274 (276)
..|++. . |||+|||||+.++|+|+++.+|.|+|
T Consensus 121 ----------g~C~~~-~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 121 ----------GTCLST-G----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred ----------CCcccc-c----------cccccCCCCccceEEcCCCCceEEeC
Confidence 124443 1 99999999999999999999999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=97.97 E-value=0.00019 Score=62.35 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=32.1
Q ss_pred CCCcceeEEeeeCCCCccceeeecccCcC---CCeeeeecCCCC
Q 023881 145 APPVTLAEYSFQGVDNMGFFDVSVVDGFN---VPIEFKGTSSRC 185 (276)
Q Consensus 145 ~pPaTLAEftl~~~~~~d~YDVSlVDGfN---lPm~I~P~~g~C 185 (276)
..|.|..||+|...+.+.|||+|-|+|.- =+|.|.|.+..|
T Consensus 71 ~~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~~~C 114 (155)
T PF04681_consen 71 GSPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSDPSC 114 (155)
T ss_pred CCceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCCCCC
Confidence 35889999999876678999999999963 246677766556
No 9
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=85.27 E-value=2 Score=42.32 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCCCCcceeeeeecccCCCCCCCCCCccCCCCC-CceecCCC-C-CCC----cceeEEeeeCCCCccceee
Q 023881 94 QGQSWVVNTDPNFNDIGRIWARTNCRFDASNGTGKCESGDCN-GVLYCVSD-G-APP----VTLAEYSFQGVDNMGFFDV 166 (276)
Q Consensus 94 pG~s~s~~vp~~~W~sGriWgRTgCs~~~~~G~~~C~TGdCg-g~l~C~g~-G-~pP----aTLAEftl~~~~~~d~YDV 166 (276)
+|++.++++|.- + +||||=..+=.. .|. ...+ | +..+=... . -|- -..+|||++. ..-|=++
T Consensus 62 ~G~~~titiP~i-~-sgRIyfS~g~~L-----~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~--~~l~~N~ 130 (369)
T cd09220 62 PGSTTTVTIPIL-A-GGRIWFSVDDKL-----TFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS--GQLYANI 130 (369)
T ss_pred CCCceeEEcccc-c-ceEEEEEcCCeE-----EEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC--CceEecc
Confidence 588899999986 7 899995543110 111 1111 1 11111000 0 111 1347999984 4578999
Q ss_pred ecccCcCCCeeeeec
Q 023881 167 SVVDGFNVPIEFKGT 181 (276)
Q Consensus 167 SlVDGfNlPm~I~P~ 181 (276)
|.||-|.+||.|+-.
T Consensus 131 S~VD~~~~P~~l~l~ 145 (369)
T cd09220 131 SYVDFVGLPLGLSLT 145 (369)
T ss_pred cceeeeccCeEEEEE
Confidence 999999999999755
No 10
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=67.42 E-value=5.8 Score=38.36 Aligned_cols=31 Identities=16% Similarity=0.430 Sum_probs=26.8
Q ss_pred eeEEeeeCCCCccceeeecccCcCCCeeeeecC
Q 023881 150 LAEYSFQGVDNMGFFDVSVVDGFNVPIEFKGTS 182 (276)
Q Consensus 150 LAEftl~~~~~~d~YDVSlVDGfNlPm~I~P~~ 182 (276)
.+|||++. ..-|-++|.||-|.+||.|+-.+
T Consensus 125 f~EFT~n~--~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 125 FIEFTYNA--TGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEecC--CceEecccceeeeccCeEEEEEc
Confidence 47999983 57899999999999999998664
No 11
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=66.14 E-value=4 Score=39.41 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=20.9
Q ss_pred CChHhHHHHHhhCC--CCccCCCCCC
Q 023881 235 PTTAYFKFFKDLCP--DAYSYSLDDA 258 (276)
Q Consensus 235 pt~~ys~~FK~~CP--~AYsYa~DD~ 258 (276)
|+..|++++++.-. .||.|||||-
T Consensus 274 ~tN~Yar~vH~~~idg~aYaF~YDDV 299 (319)
T cd09214 274 PANYYAQFWHAHSINGLAYGFPYDDV 299 (319)
T ss_pred CchHHHHHHHHhccCCCeeecccccc
Confidence 44599999999997 8999999984
No 12
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=63.45 E-value=4.8 Score=39.49 Aligned_cols=77 Identities=21% Similarity=0.206 Sum_probs=45.4
Q ss_pred cCCCeEEEEcCCCCCcceeeeeecccCCCCCCCCCCccCCCCCCceecC-CC-C-CCC----cceeEEeeeCCCCcccee
Q 023881 93 HQGQSWVVNTDPNFNDIGRIWARTNCRFDASNGTGKCESGDCNGVLYCV-SD-G-APP----VTLAEYSFQGVDNMGFFD 165 (276)
Q Consensus 93 ~pG~s~s~~vp~~~W~sGriWgRTgCs~~~~~G~~~C~TGdCgg~l~C~-g~-G-~pP----aTLAEftl~~~~~~d~YD 165 (276)
++|++.++.+|. + +||||=..|=. =.|.=.. +..+.=. .. . -|- -..+|||++. ..-|-+
T Consensus 60 ~~G~~~tvtiP~--~-sgRiyfS~g~~-----L~F~~~~---~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~--~gl~~N 126 (353)
T cd09216 60 SPGDTTTVLPPR--M-SGRIYFSLGSK-----LRFKVVT---NPALVQPAGWNPSDPNFNILHDWVEFTFND--AGLFCN 126 (353)
T ss_pred CCCCceEEcccc--c-CcEEEEEcCCe-----eEEEecC---CCcccCCCCCCCCCCCccceEEEEEEEecC--CceEec
Confidence 357788888885 4 89999655311 0111111 1111111 00 0 111 1347999984 456899
Q ss_pred eecccCcCCCeeeeecC
Q 023881 166 VSVVDGFNVPIEFKGTS 182 (276)
Q Consensus 166 VSlVDGfNlPm~I~P~~ 182 (276)
+|.||-|.+||.|+-.+
T Consensus 127 ~T~VD~~~~P~~l~l~~ 143 (353)
T cd09216 127 TTQVDMFSAPLAIGLRG 143 (353)
T ss_pred ccceeeeccceEEEEec
Confidence 99999999999998653
No 13
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=60.96 E-value=6 Score=31.74 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=10.3
Q ss_pred hhchhhHHHHHHHHHHHHh-hcccceEE
Q 023881 44 MSFSNFLFLSALSSFILWS-TSIDAAVF 70 (276)
Q Consensus 44 m~~~~~~~~~~~~~~~~~~-~~a~a~t~ 70 (276)
|++-.+|+|.+||.++||+ +.+.++..
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 5633333333333233333 33444444
No 14
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=53.66 E-value=15 Score=36.16 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=20.8
Q ss_pred CChHhHHHHHhhCC--CCccCCCCCC
Q 023881 235 PTTAYFKFFKDLCP--DAYSYSLDDA 258 (276)
Q Consensus 235 pt~~ys~~FK~~CP--~AYsYa~DD~ 258 (276)
|+..|++++++.-. .||.|||||-
T Consensus 308 ~tNhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 308 VTNHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred CchHHHHHHHHhccCCCeeecCcccc
Confidence 55699999999987 6899999994
No 15
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=52.74 E-value=38 Score=27.76 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=38.3
Q ss_pred hcccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCCeEEEEcCCCCCcceeeeeec
Q 023881 63 TSIDAAVFEVQNNCSYTVWAAAN------------------------P-GGGRELHQGQSWVVNTDPNFNDIGRIWART 116 (276)
Q Consensus 63 ~~a~a~t~ti~N~C~~tVWpg~~------------------------p-~~G~~L~pG~s~s~~vp~~~W~sGriWgRT 116 (276)
++....++.|+|.-.-+|.+|.. | ++..+.+||+++++.+-+- =-..+|+|-.
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~-gG~r~v~G~~ 94 (101)
T TIGR00192 17 EGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAI-GGNRRIYGFN 94 (101)
T ss_pred CCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEc-cCceEEEccC
Confidence 45567999999999999999952 2 4556779999999986532 0145666544
No 16
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=52.71 E-value=39 Score=27.73 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=38.4
Q ss_pred hcccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCCeEEEEcCCCCCcceeeeeec
Q 023881 63 TSIDAAVFEVQNNCSYTVWAAAN------------------------P-GGGRELHQGQSWVVNTDPNFNDIGRIWART 116 (276)
Q Consensus 63 ~~a~a~t~ti~N~C~~tVWpg~~------------------------p-~~G~~L~pG~s~s~~vp~~~W~sGriWgRT 116 (276)
++....+++|+|.-.-+|.+|.. | ++..+.+||+++++++-+- =-..+|+|-.
T Consensus 17 ~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~-~G~r~v~G~~ 94 (101)
T cd00407 17 AGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPI-GGKRRVYGFN 94 (101)
T ss_pred CCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEc-cCceEEEccC
Confidence 35567999999999999999952 2 4567789999999986532 0145666543
No 17
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=52.30 E-value=16 Score=36.08 Aligned_cols=24 Identities=29% Similarity=0.678 Sum_probs=21.1
Q ss_pred CChHhHHHHHhhCC--CCccCCCCCC
Q 023881 235 PTTAYFKFFKDLCP--DAYSYSLDDA 258 (276)
Q Consensus 235 pt~~ys~~FK~~CP--~AYsYa~DD~ 258 (276)
|+..|++++++.-+ .+|.|||||-
T Consensus 319 ~tNhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 319 PTNHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred CchHHHHHHHHhccCCCeeccccccc
Confidence 44599999999998 7899999995
No 18
>PRK13202 ureB urease subunit beta; Reviewed
Probab=45.66 E-value=58 Score=26.85 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=36.4
Q ss_pred cceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCCeEEEEcCCCCCcceeeeeec
Q 023881 66 DAAVFEVQNNCSYTVWAAAN------------------------P-GGGRELHQGQSWVVNTDPNFNDIGRIWART 116 (276)
Q Consensus 66 ~a~t~ti~N~C~~tVWpg~~------------------------p-~~G~~L~pG~s~s~~vp~~~W~sGriWgRT 116 (276)
...+++|+|...-+|++|.. | ++..+.+||+++++.+-+- =-..+|+|-.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~-gG~r~v~G~~ 95 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPL-GGRREVPGLT 95 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEc-cCCeEEEcCC
Confidence 56899999999999999952 2 4556779999999986532 0145676554
No 19
>PRK13203 ureB urease subunit beta; Reviewed
Probab=41.44 E-value=58 Score=26.74 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=38.1
Q ss_pred hcccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCCeEEEEcCCCCCcceeeeeec
Q 023881 63 TSIDAAVFEVQNNCSYTVWAAAN------------------------P-GGGRELHQGQSWVVNTDPNFNDIGRIWART 116 (276)
Q Consensus 63 ~~a~a~t~ti~N~C~~tVWpg~~------------------------p-~~G~~L~pG~s~s~~vp~~~W~sGriWgRT 116 (276)
++-...++.|+|...-+|.+|.. | ++..+.+||+++++.+-+- =-..+|+|-.
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~-gG~r~v~G~n 94 (102)
T PRK13203 17 AGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPL-AGARRVYGFR 94 (102)
T ss_pred CCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEc-cCceEEEccC
Confidence 35567999999999999999952 2 4556779999999986532 0145666543
No 20
>PRK13204 ureB urease subunit beta; Reviewed
Probab=41.32 E-value=67 Score=28.28 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=39.5
Q ss_pred hcccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCCeEEEEcCCCCCcceeeeeecc
Q 023881 63 TSIDAAVFEVQNNCSYTVWAAAN------------------------P-GGGRELHQGQSWVVNTDPNFNDIGRIWARTN 117 (276)
Q Consensus 63 ~~a~a~t~ti~N~C~~tVWpg~~------------------------p-~~G~~L~pG~s~s~~vp~~~W~sGriWgRTg 117 (276)
++-...+++|+|.-.-+|.+|.. | ++..+.+||++++|.+-+- =-..+|+|-.+
T Consensus 40 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~-gG~r~V~Gfng 118 (159)
T PRK13204 40 QGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVPF-AGKRFIFGFNN 118 (159)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEEc-cCceEEEccCc
Confidence 46678999999999999999952 2 4557779999999986532 01467776543
No 21
>PRK13201 ureB urease subunit beta; Reviewed
Probab=40.61 E-value=70 Score=27.52 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=38.4
Q ss_pred hcccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCCeEEEEcCCCCCcceeeeeec
Q 023881 63 TSIDAAVFEVQNNCSYTVWAAAN------------------------P-GGGRELHQGQSWVVNTDPNFNDIGRIWART 116 (276)
Q Consensus 63 ~~a~a~t~ti~N~C~~tVWpg~~------------------------p-~~G~~L~pG~s~s~~vp~~~W~sGriWgRT 116 (276)
++-...++.|+|.-.-+|.+|.. | ++..+.+||+++++.+-+- =-..+|+|-.
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~i-gG~r~V~Gfn 94 (136)
T PRK13201 17 NHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVEY-AGKRKIFGFR 94 (136)
T ss_pred CCCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEEc-cCceEEEccC
Confidence 45567999999999999999952 2 4556779999999986532 0145676544
No 22
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=38.48 E-value=14 Score=31.47 Aligned_cols=17 Identities=53% Similarity=1.212 Sum_probs=13.7
Q ss_pred CCCCccCCCCCCceecC
Q 023881 125 GTGKCESGDCNGVLYCV 141 (276)
Q Consensus 125 G~~~C~TGdCgg~l~C~ 141 (276)
|.+.|+-|||||.|.|.
T Consensus 83 g~Gp~~PGdCGg~L~C~ 99 (127)
T PF00947_consen 83 GEGPAEPGDCGGILRCK 99 (127)
T ss_dssp EE-SSSTT-TCSEEEET
T ss_pred ecccCCCCCCCceeEeC
Confidence 66889999999999997
No 23
>PRK13198 ureB urease subunit beta; Reviewed
Probab=37.44 E-value=83 Score=27.69 Aligned_cols=53 Identities=9% Similarity=0.082 Sum_probs=38.7
Q ss_pred hcccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCCeEEEEcCCCCCcceeeeeec
Q 023881 63 TSIDAAVFEVQNNCSYTVWAAAN------------------------P-GGGRELHQGQSWVVNTDPNFNDIGRIWART 116 (276)
Q Consensus 63 ~~a~a~t~ti~N~C~~tVWpg~~------------------------p-~~G~~L~pG~s~s~~vp~~~W~sGriWgRT 116 (276)
++-...++.|+|.-.-+|.+|.. | ++..+.+||++++|.+-+- =-..+|+|-.
T Consensus 45 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~-gG~r~V~Gfn 122 (158)
T PRK13198 45 ENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIPF-GGKQTLYGFN 122 (158)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEEc-cCceEEEccC
Confidence 45667999999999999999952 2 4556779999999986532 0146677654
No 24
>PRK02710 plastocyanin; Provisional
Probab=35.75 E-value=1.5e+02 Score=23.92 Aligned_cols=20 Identities=15% Similarity=0.136 Sum_probs=13.3
Q ss_pred eeecCCCCeeecCCCeEEEEc
Q 023881 82 AAANPGGGRELHQGQSWVVNT 102 (276)
Q Consensus 82 pg~~p~~G~~L~pG~s~s~~v 102 (276)
....| .-.++++|++.++..
T Consensus 42 ~~F~P-~~i~v~~Gd~V~~~N 61 (119)
T PRK02710 42 LAFEP-STLTIKAGDTVKWVN 61 (119)
T ss_pred eEEeC-CEEEEcCCCEEEEEE
Confidence 34445 467888898877653
No 25
>PRK13986 urease subunit alpha; Provisional
Probab=33.84 E-value=93 Score=28.89 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=39.6
Q ss_pred hcccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCCeEEEEcCCCCCcceeeeeecc
Q 023881 63 TSIDAAVFEVQNNCSYTVWAAAN------------------------P-GGGRELHQGQSWVVNTDPNFNDIGRIWARTN 117 (276)
Q Consensus 63 ~~a~a~t~ti~N~C~~tVWpg~~------------------------p-~~G~~L~pG~s~s~~vp~~~W~sGriWgRTg 117 (276)
++-...+++|+|.-.-+|.+|.. | ++..+.+||+++++.+-+- =-..+|+|-.|
T Consensus 122 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~-gG~r~v~G~ng 200 (225)
T PRK13986 122 AGKKAVSVKVKNVGDRPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELIDI-GGNRRIFGFNA 200 (225)
T ss_pred CCCcEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEc-cCceEEecCCc
Confidence 45677999999999999999952 2 4567789999999986532 01467776543
No 26
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=33.61 E-value=96 Score=28.49 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=38.3
Q ss_pred hcccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCCeEEEEcCCCCCcceeeeeec
Q 023881 63 TSIDAAVFEVQNNCSYTVWAAAN------------------------P-GGGRELHQGQSWVVNTDPNFNDIGRIWART 116 (276)
Q Consensus 63 ~~a~a~t~ti~N~C~~tVWpg~~------------------------p-~~G~~L~pG~s~s~~vp~~~W~sGriWgRT 116 (276)
++-...+++|+|.-.-+|.+|.. | ++..+.+||+++++.+-+- =-..+|+|-.
T Consensus 126 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~-gG~r~v~G~~ 203 (208)
T PRK13192 126 AGRPAVTLDVTNTGDRPIQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLVPI-GGARVVIGFN 203 (208)
T ss_pred CCCCEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEc-cCceEEEccc
Confidence 45567999999999999999952 2 4556779999999986532 0146676643
No 27
>PRK13205 ureB urease subunit beta; Reviewed
Probab=32.92 E-value=1.1e+02 Score=27.10 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=38.8
Q ss_pred hcccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCCeEEEEcCCCCCcceeeeeecc
Q 023881 63 TSIDAAVFEVQNNCSYTVWAAAN------------------------P-GGGRELHQGQSWVVNTDPNFNDIGRIWARTN 117 (276)
Q Consensus 63 ~~a~a~t~ti~N~C~~tVWpg~~------------------------p-~~G~~L~pG~s~s~~vp~~~W~sGriWgRTg 117 (276)
++-...+|+|+|.-.-+|.+|.. | ++..+.+||+++++.+-+- =-..+|+|-.+
T Consensus 17 ~GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV~i-gG~R~V~Gfng 95 (162)
T PRK13205 17 VGREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLVAI-GGDRIVAGFRD 95 (162)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEEEc-cCceEEEccCc
Confidence 45677999999999999999952 2 4556779999999986532 01456665543
No 28
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=31.91 E-value=95 Score=26.29 Aligned_cols=36 Identities=17% Similarity=0.028 Sum_probs=28.0
Q ss_pred cceEEEEEeCCCCceeeeecCCCC-----eeecCCCeEEEE
Q 023881 66 DAAVFEVQNNCSYTVWAAANPGGG-----RELHQGQSWVVN 101 (276)
Q Consensus 66 ~a~t~ti~N~C~~tVWpg~~p~~G-----~~L~pG~s~s~~ 101 (276)
....++|+|+.+.+|-+-++--.| ..|+||+.+.+.
T Consensus 7 ~~~~v~F~N~t~~~v~~~Wid~~G~~~~Y~~l~pg~~~~~~ 47 (141)
T cd05468 7 VPSTVRFVNRTDRPVELYWIDYDGKPVSYGTLQPGETVRQN 47 (141)
T ss_pred ceEEEEEEeCCCCeEEEEEECCCCCEEEeeeeCCCCEEeec
Confidence 357899999999999888764223 479999987664
No 29
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=31.63 E-value=88 Score=25.63 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=31.2
Q ss_pred hcccceEEEEEeCCCCceeeeec------------------------C-CCCeeecCCCeEEEEcCCCCCcceeeeee
Q 023881 63 TSIDAAVFEVQNNCSYTVWAAAN------------------------P-GGGRELHQGQSWVVNTDPNFNDIGRIWAR 115 (276)
Q Consensus 63 ~~a~a~t~ti~N~C~~tVWpg~~------------------------p-~~G~~L~pG~s~s~~vp~~~W~sGriWgR 115 (276)
++-...+++|+|.-.-+|.+|.. | ++..+.+||+++++.+-+- =-..+|+|-
T Consensus 16 ~gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV~~-gG~r~v~G~ 92 (100)
T PF00699_consen 16 AGRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELVPI-GGNRRVYGF 92 (100)
T ss_dssp TTSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE--STT-EE-ST
T ss_pred CCCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEEEc-cCCeEEEcC
Confidence 34567899999999999999952 2 4556779999999976432 003556543
No 30
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=31.28 E-value=1.3e+02 Score=25.76 Aligned_cols=28 Identities=11% Similarity=0.329 Sum_probs=20.7
Q ss_pred CeeecCCCeEEEEcCCCCCcceeeeeecccCC
Q 023881 89 GRELHQGQSWVVNTDPNFNDIGRIWARTNCRF 120 (276)
Q Consensus 89 G~~L~pG~s~s~~vp~~~W~sGriWgRTgCs~ 120 (276)
...|+||++.++.++.. - .|++| --|..
T Consensus 93 s~~I~pGet~TitF~ad-K-pG~Y~--y~C~~ 120 (135)
T TIGR03096 93 SEVIKAGETKTISFKAD-K-AGAFT--IWCQL 120 (135)
T ss_pred ceEECCCCeEEEEEECC-C-CEEEE--EeCCC
Confidence 45699999999987766 3 79987 44554
No 31
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=28.96 E-value=18 Score=31.25 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=7.8
Q ss_pred cccCcCCCee
Q 023881 168 VVDGFNVPIE 177 (276)
Q Consensus 168 lVDGfNlPm~ 177 (276)
+||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899998544
No 32
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=28.58 E-value=43 Score=25.64 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=12.5
Q ss_pred hhchhhHHHHHHHHHHHHhhcccc
Q 023881 44 MSFSNFLFLSALSSFILWSTSIDA 67 (276)
Q Consensus 44 m~~~~~~~~~~~~~~~~~~~~a~a 67 (276)
|...++.+|++|+|+-+|+..+++
T Consensus 1 mnn~Si~VLlaLvLIg~fAVqSda 24 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQSDA 24 (71)
T ss_pred CCchhHHHHHHHHHHhhheeeecC
Confidence 344455555555555566654443
No 33
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=26.07 E-value=72 Score=23.47 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=17.0
Q ss_pred eeecCCCeEEEEcCCCCC----cceeeee
Q 023881 90 RELHQGQSWVVNTDPNFN----DIGRIWA 114 (276)
Q Consensus 90 ~~L~pG~s~s~~vp~~~W----~sGriWg 114 (276)
|+|+||+..++....+ . .+|++|=
T Consensus 2 ~~L~~g~~~~lr~~~~-~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-QRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCC-cEEEEccccEEE
Confidence 6788888888887765 2 2577773
No 34
>PHA03094 dUTPase; Provisional
Probab=25.84 E-value=67 Score=27.25 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=23.7
Q ss_pred CeeecCCCeEE------EEcCCCCCcceeeeeecccCC
Q 023881 89 GRELHQGQSWV------VNTDPNFNDIGRIWARTNCRF 120 (276)
Q Consensus 89 G~~L~pG~s~s------~~vp~~~W~sGriWgRTgCs~ 120 (276)
.+.|.||+... +.+|.+ | .|.|++|.+-..
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g-~-~g~i~~RSsla~ 70 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKF-C-YGRIAPRSGLSL 70 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCC-E-EEEEEccccccc
Confidence 46778888766 678999 8 799999987654
No 35
>PF08888 HopJ: HopJ type III effector protein; InterPro: IPR014984 Pathovars of Pseudomonas syringae interact with their plant hosts via the action of Hrp outer protein (Hop) effector proteins, injected into plant cells by the type III secretion system. The proteins are called HopJ after the original member HopPmaJ []. ; PDB: 2QM2_B 2QHQ_B.
Probab=20.67 E-value=15 Score=30.52 Aligned_cols=12 Identities=67% Similarity=0.994 Sum_probs=9.6
Q ss_pred cCccceeEEeec
Q 023881 4 SNEGSCKIFYPA 15 (276)
Q Consensus 4 ~~~~~~~~~~~~ 15 (276)
.|+||||||.=|
T Consensus 48 eN~GScKiFaFA 59 (111)
T PF08888_consen 48 ENNGSCKIFAFA 59 (111)
T ss_dssp SSHHHHHHHHHH
T ss_pred CcccchHHHHHH
Confidence 589999999644
No 36
>PLN00115 pollen allergen group 3; Provisional
Probab=20.43 E-value=1.1e+02 Score=25.60 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=17.7
Q ss_pred hhchhhHHHHHHHHHHHHhhcc--cceEEEEEeCCCCceeeeec
Q 023881 44 MSFSNFLFLSALSSFILWSTSI--DAAVFEVQNNCSYTVWAAAN 85 (276)
Q Consensus 44 m~~~~~~~~~~~~~~~~~~~~a--~a~t~ti~N~C~~tVWpg~~ 85 (276)
|+++..|+ +++.++.||+.+. ...+|+|.-.- .+-|...+
T Consensus 1 ~~~~~~~~-~~~~~a~l~~~~~~g~~v~F~V~~gS-np~yL~ll 42 (118)
T PLN00115 1 MSSLSFLL-LAVALAALFAVGSCATEVTFKVGKGS-SSTSLELV 42 (118)
T ss_pred CchhHHHH-HHHHHHHHhhhhhcCCceEEEECCCC-CcceEEEE
Confidence 44444422 2333344444433 35666666444 23444443
Done!