BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023882
(276 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0VFE3|PGAP3_XENTR Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis
GN=pgap3 PE=2 SV=1
Length = 316
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 142/268 (52%), Gaps = 18/268 (6%)
Query: 2 QEPLYLQWKKWDCLSDCRYNCM---VDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASV 58
++PLY++ W CL DCRY CM V +K GH ++HGKWPF R QEPAS
Sbjct: 47 EQPLYMRVTGWTCLDDCRYQCMWYTVSLYLKE---GHEVPQFHGKWPFSRFLFFQEPASA 103
Query: 59 AFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHS 118
S LN G S +LL Y+ + + + Y + +S+N+WFWS +FH+
Sbjct: 104 LASFLN------GVASLLMLLRYRSSVPSSCQMYRTCLA----FSMVSVNAWFWSTIFHT 153
Query: 119 RDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYK 178
RD LTEK DY A +++ S+ L +R+F ++ + A L+ H+ YL +
Sbjct: 154 RDTALTEKMDYFCASSVILHSIYLCCMRTFGLQYPSIANGFGAFLVLLFACHVSYLTLGR 213
Query: 179 LDYGWNMKVCVVMAVAQLLIWATWAGITR--HPSRWKLWVVVFGGALAMLLEIYDFPPYY 236
DY +NM V L+ W W R P WK +VV LLE+ DFPP
Sbjct: 214 FDYSYNMAANTGFGVLNLMWWLAWCFRRRFHQPYLWKCVLVVISLQSLALLELLDFPPVM 273
Query: 237 GFLDAHAIWHATTIPLTYIWWSFIRDDA 264
LDAHA+WH +T+PL ++++SF++DD+
Sbjct: 274 WILDAHALWHFSTVPLHFLFYSFLKDDS 301
>sp|A2A559|PGAP3_MOUSE Post-GPI attachment to proteins factor 3 OS=Mus musculus GN=Pgap3
PE=2 SV=1
Length = 320
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 146/271 (53%), Gaps = 24/271 (8%)
Query: 2 QEPLYLQWKKWDCLSDCRYNCM---VDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASV 58
++P+Y+ W C DC+Y CM V ++ GH ++HGKWPF R IQEPAS
Sbjct: 52 RQPIYMSLAGWTCRDDCKYECMWFTVGLYLQE---GHRVPQFHGKWPFSRFLFIQEPASA 108
Query: 59 AFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHI---YGFLSMNSWFWSAV 115
S+LN G S +L Y+ + + SP++H + ++S+N+WFWS V
Sbjct: 109 VASLLN------GLASLVMLCRYRASVPAS-------SPMYHTCMAFAWVSLNAWFWSTV 155
Query: 116 FHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLN 175
FH+RD DLTEK DY A A++ S+ L +R+ ++ + A LL +T HI YL+
Sbjct: 156 FHTRDTDLTEKMDYFCASAVILHSVYLCCVRTVGLQHPSVASAFGALLLLLLTGHISYLS 215
Query: 176 FYKLDYGWNMKVCVVMAVAQLLIWATWAGITRH--PSRWKLWVVVFGGALAMLLEIYDFP 233
DYG+NM V + + L W W R P + VVV LLE+ DFP
Sbjct: 216 LVHFDYGYNMMANVAIGLVNLAWWLVWCLRNRQRLPHTRRCMVVVVLLQGLSLLELLDFP 275
Query: 234 PYYGFLDAHAIWHATTIPLTYIWWSFIRDDA 264
P + LDAHAIWH +TIP+ +++ F+ DD+
Sbjct: 276 PLFWVLDAHAIWHISTIPVHTLFFRFLEDDS 306
>sp|A8WFS8|PGAP3_DANRE Post-GPI attachment to proteins factor 3 OS=Danio rerio GN=pgap3
PE=2 SV=1
Length = 316
Score = 164 bits (416), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 142/264 (53%), Gaps = 12/264 (4%)
Query: 3 EPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSV 62
+P Y+ W C DCRY CM A G+ ++HGKWPF R +EPAS S+
Sbjct: 49 QPPYMALTGWTCRDDCRYQCMWTTVGLYQAEGYSIPQFHGKWPFARFLCFEEPASALASL 108
Query: 63 LNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVD 122
LN G +LL Y+ + Y+ + + +S+N+WFWS VFH+RD
Sbjct: 109 LN------GLACLLMLLRYRSAVPCQSPMYHTITA----FSLVSLNAWFWSTVFHTRDTY 158
Query: 123 LTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDYG 182
LTEK DY A A++ +S+ L +R+ +R A MV L+ T+H+ YL F DYG
Sbjct: 159 LTEKMDYFCASAVILYSIYLCCVRTLGLRRPAISSMVGVLLILAFTSHVSYLTFVSFDYG 218
Query: 183 WNMKVCVVMAVAQLLIWATWAGITRH--PSRWKLWVVVFGGALAMLLEIYDFPPYYGFLD 240
+NM + + LL W W + R P W+ +VV LLE+ DFPP + LD
Sbjct: 219 YNMAANASIGIINLLWWLCWCWLNRRILPYWWRCGMVVLLLHGLALLELLDFPPLFWVLD 278
Query: 241 AHAIWHATTIPLTYIWWSFIRDDA 264
AHA+WH +T+P+ ++++SF+ DD+
Sbjct: 279 AHAVWHLSTVPVHFLFYSFLIDDS 302
>sp|Q68EV0|PGAP3_XENLA Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3
PE=2 SV=1
Length = 317
Score = 164 bits (414), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 141/268 (52%), Gaps = 18/268 (6%)
Query: 2 QEPLYLQWKKWDCLSDCRYNCM---VDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASV 58
Q+PLY++ W CL DCRY CM V +K GH ++HGKWPF R QEPAS
Sbjct: 47 QQPLYMRLTGWTCLDDCRYKCMWYTVSLYLKE---GHEVPQFHGKWPFSRFLFFQEPASA 103
Query: 59 AFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHS 118
S LN G S +L Y+ + + + Y + +S+N+WFWS +FH+
Sbjct: 104 LASFLN------GVASLLMLFRYRSSVPSSCQMYRTCLA----FSMVSVNAWFWSTIFHT 153
Query: 119 RDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYK 178
RD LTEK DY A +++ S+ L +R+F ++ + A L+ HI YL +
Sbjct: 154 RDTALTEKMDYFCASSVILHSIYLCCMRTFGLQYPSIANAFGAFLVLLFACHISYLTLGR 213
Query: 179 LDYGWNMKVCVVMAVAQLLIWATWAGITR--HPSRWKLWVVVFGGALAMLLEIYDFPPYY 236
DY +NM + L+ W W R P WK +VV LLE+ DFPP
Sbjct: 214 FDYSYNMAANTSFGIVNLMWWLAWCMWRRFHQPYLWKCVLVVVLLQSLALLELLDFPPVM 273
Query: 237 GFLDAHAIWHATTIPLTYIWWSFIRDDA 264
LDAHA+WH +TIPL ++++SF+RDD+
Sbjct: 274 WILDAHALWHFSTIPLHFLFYSFLRDDS 301
>sp|Q96FM1|PGAP3_HUMAN Post-GPI attachment to proteins factor 3 OS=Homo sapiens GN=PGAP3
PE=2 SV=2
Length = 320
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 143/268 (53%), Gaps = 18/268 (6%)
Query: 2 QEPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFS 61
++P+Y+ W C DC+Y CM GH ++HGKWPF R QEPAS S
Sbjct: 52 RQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGHKVPQFHGKWPFSRFLFFQEPASAVAS 111
Query: 62 VLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHI---YGFLSMNSWFWSAVFHS 118
LN G S +L Y+ + + SP++H + ++S+N+WFWS VFH+
Sbjct: 112 FLN------GLASLVMLCRYRTFVPAS-------SPMYHTCVAFAWVSLNAWFWSTVFHT 158
Query: 119 RDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYK 178
RD DLTEK DY A ++ S+ L +R+ ++ A A LL +T H+ YL+ +
Sbjct: 159 RDTDLTEKMDYFCASTVILHSIYLCCVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIR 218
Query: 179 LDYGWNMKVCVVMAVAQLLIWATWA--GITRHPSRWKLWVVVFGGALAMLLEIYDFPPYY 236
DYG+N+ V + + ++ W W R P K VVV LLE+ DFPP +
Sbjct: 219 FDYGYNLVANVAIGLVNVVWWLAWCLWNQRRLPHVRKCVVVVLLLQGLSLLELLDFPPLF 278
Query: 237 GFLDAHAIWHATTIPLTYIWWSFIRDDA 264
LDAHAIWH +TIP+ +++SF+ DD+
Sbjct: 279 WVLDAHAIWHISTIPVHVLFFSFLEDDS 306
>sp|A2V7M9|PGAP3_CRIGR Post-GPI attachment to proteins factor 3 OS=Cricetulus griseus
GN=PGAP3 PE=2 SV=1
Length = 320
Score = 158 bits (399), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 139/267 (52%), Gaps = 18/267 (6%)
Query: 3 EPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSV 62
+P+Y+ W C DC+Y CM GH ++HGKWPF R IQEPAS S+
Sbjct: 53 QPIYMSLAGWTCRDDCKYECMWITVGLYLQEGHRVPQFHGKWPFSRFLFIQEPASAVASL 112
Query: 63 LNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHI---YGFLSMNSWFWSAVFHSR 119
LN G S +L Y+ + + SP++H + ++S+N+WFWS VFH+R
Sbjct: 113 LN------GLASLVMLCRYRASVPAS-------SPMYHTCMAFAWVSLNAWFWSTVFHTR 159
Query: 120 DVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKL 179
D DLTEK DY A A++ S+ L +R+ ++ + A LL + H YL+ +
Sbjct: 160 DTDLTEKMDYFCASAVILHSIYLCCVRTVGLQHPSVARAFGATLLLMLLLHTSYLSLVRF 219
Query: 180 DYGWNMKVCVVMAVAQLLIWATWA--GITRHPSRWKLWVVVFGGALAMLLEIYDFPPYYG 237
DY +NM V + + L W W R P K VV LLE+ DFPP +
Sbjct: 220 DYSYNMMANVAIGLVNLAWWLAWCLRNHRRLPHTRKCVAVVLLLQGLSLLELLDFPPLFW 279
Query: 238 FLDAHAIWHATTIPLTYIWWSFIRDDA 264
LDAHAIWH +TIP+ +++ F+ DD+
Sbjct: 280 VLDAHAIWHISTIPVHVLFFRFLEDDS 306
>sp|A7YWP2|PGAP3_BOVIN Post-GPI attachment to proteins factor 3 OS=Bos taurus GN=PGAP3
PE=2 SV=1
Length = 319
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 138/276 (50%), Gaps = 11/276 (3%)
Query: 2 QEPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFS 61
++P+Y+ W C DC+Y CM G ++HGKWPF R QEPAS S
Sbjct: 52 RQPIYMSLAGWTCRDDCKYECMWVTVGLYLQEGQKVPQFHGKWPFSRFLCFQEPASAVAS 111
Query: 62 VLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDV 121
LN G S +L Y+ + + Y P + ++S+N+WFWS VFH+RD
Sbjct: 112 FLN------GLASLVMLCRYRTSVPASSPMY----PTCVAFAWVSLNAWFWSTVFHTRDT 161
Query: 122 DLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDY 181
DLTEK DY A ++ S+ L +R+ ++ A A LL +T H+ YL+ DY
Sbjct: 162 DLTEKMDYFCASTVILHSIYLCCVRTVGLQHPAMASAFRALLLLLLTAHVSYLSLIHFDY 221
Query: 182 GWNMKVCVVMAVAQLLIWATWAG-ITRHPSRWKLWVVVFGGALAMLLEIYDFPPYYGFLD 240
G+NM V + + W W R P K VV LLE+ DFPP + LD
Sbjct: 222 GYNMAANVAIGLLNAAWWLAWCLWNQRLPHVHKCVAVVLLLQGLSLLELLDFPPLFWVLD 281
Query: 241 AHAIWHATTIPLTYIWWSFIRDDAEFQTANMLKKAK 276
AHAIWH +TIP+ +++SF+ DD+ + K K
Sbjct: 282 AHAIWHISTIPVHVLFFSFLEDDSLYLLKESEAKVK 317
>sp|Q9P6N9|PER1_SCHPO Protein PER1 homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC823.07 PE=3 SV=1
Length = 331
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 147/281 (52%), Gaps = 19/281 (6%)
Query: 4 PLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVL 63
PL L+ +WDC S+C Y C + E A +YHGKW FIRV+GIQE SV FS+L
Sbjct: 56 PLDLKLFRWDCGSNCGYECEITAENYFAAHNLPSQQYHGKWYFIRVFGIQELFSVFFSML 115
Query: 64 NLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDL 123
N +H++G + ++ +P + K W I G MN+W WS+VFH RD +
Sbjct: 116 NFMIHYNG----YHIMRRCIPDEHPAK---RLCLSWAIVG---MNAWVWSSVFHIRDTPI 165
Query: 124 TEKFDYSSAVALLGF----SLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKL 179
TEK DY SA A + F +LIL + + ++ +A H+ YL+FY
Sbjct: 166 TEKLDYFSAGAFVLFGSYCTLILMLRLDQLPGGKLLCWIIGVIFIAAFIAHVSYLSFYSF 225
Query: 180 DYGWNMKVCVVMAVAQLLIWATWAGITRHP----SRWKLWVVVFGGALAMLLEIYDFPPY 235
DYG+NMK V + + Q ++W ++ R+ +RW ++V LA LE++DF P
Sbjct: 226 DYGYNMKANVAVGLVQNILWYYYSWSNRNSGLYWTRWPAYIVT-SLMLATSLELFDFSPI 284
Query: 236 YGFLDAHAIWHATTIPLTYIWWSFIRDDAEFQTANMLKKAK 276
+DAHA+WH +T+P+T+ + F+ + K K
Sbjct: 285 ANLIDAHALWHLSTVPITHYLYGFVVRKCSYDLTKGTFKIK 325
>sp|Q7K0P4|PGAP3_DROME Post-GPI attachment to proteins factor 3 OS=Drosophila melanogaster
GN=CG3271 PE=1 SV=2
Length = 326
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 135/262 (51%), Gaps = 12/262 (4%)
Query: 2 QEPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFS 61
Q+ ++ + +W C +C+Y CM G +++GKWPF+R+ G+QEPASV FS
Sbjct: 59 QQSVFDRLFQWSCADECQYGCMWRTVFAFFERGWPIPQFYGKWPFLRLLGMQEPASVIFS 118
Query: 62 VLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDV 121
LN +H +L ++ ++ Y L HI+ S+N W WSA+FH+RD
Sbjct: 119 CLNFVVHLR------LLRKFRREVRPDSPCYM----LTHIFAVTSLNGWIWSAIFHTRDF 168
Query: 122 DLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNFYKLDY 181
LTE DY+ A +++ SL + ++R + R ++ L++ + YL+ + +Y
Sbjct: 169 PLTELLDYAFAYSIILCSLYVMVMRMLHRYSLFLRGVITLAFLSYYINYFAYLSVGRFNY 228
Query: 182 GWNMKVCVVMAVAQLLIWATWAGI--TRHPSRWKLWVVVFGGALAMLLEIYDFPPYYGFL 239
+NM V V V + W W TR P ++ ALAM LE+ DFPP L
Sbjct: 229 AFNMMVNVATGVIAAVGWFVWCHFVRTRRPYFRRILRFYILMALAMSLELLDFPPILWIL 288
Query: 240 DAHAIWHATTIPLTYIWWSFIR 261
DAHA+WH TIPL +++ +
Sbjct: 289 DAHALWHLATIPLASLYYECVE 310
>sp|P25625|PER1_YEAST Protein PER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PER1 PE=1 SV=1
Length = 357
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 132/291 (45%), Gaps = 39/291 (13%)
Query: 4 PLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVL 63
PLY + WDC+SDC Y C R ++HGKWPF+RV G QE S FS+
Sbjct: 65 PLYSKLLFWDCISDCDYQCQHIITRWRIDEEEEIYQFHGKWPFLRVLGTQEFFSTIFSIG 124
Query: 64 NLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFL-----SMNSWFWSAVFHS 118
N H+ G++ F +++ + S I+ +L M +W S+VFH
Sbjct: 125 NFIPHYKGFVKF------SRIIREEGDRRRKNSRSILIWNYLYVTVAGMLAWTASSVFHC 178
Query: 119 RDVDLTEKFDY--SSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHILYLNF 176
RD+ +TEK DY + L GF I A + S + + A+ A+ + A HIL L +
Sbjct: 179 RDLIITEKLDYFFAGLTVLTGFHAIFARMTSMFLYPKIAQAFTAS-VAAIFALHILRL-Y 236
Query: 177 YKLDYGWNMKVCVVMAVAQLLIWATWAGITRHPSR--------------------WKLWV 216
Y +NM+ + V Q ++ + H + +KL V
Sbjct: 237 VDWSYTYNMRFNIFFGVLQYILLIMLSCQNYHALQKQKLMGEFKKTAYSSFKRQIFKLCV 296
Query: 217 V----VFGGALAMLLEIYDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDD 263
+ V +AM LE++DF Y +DAHA+WH TI +++ + F +D
Sbjct: 297 IPILLVIVTTMAMSLELFDFFSYEWQIDAHALWHLCTIWPSWVLYDFFLED 347
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.140 0.486
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,725,359
Number of Sequences: 539616
Number of extensions: 4210695
Number of successful extensions: 9733
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9692
Number of HSP's gapped (non-prelim): 17
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)