Query 023882
Match_columns 276
No_of_seqs 109 out of 222
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:20:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04080 Per1: Per1-like ; In 100.0 3E-110 7E-115 768.1 24.1 254 2-265 2-267 (267)
2 KOG2970 Predicted membrane pro 100.0 1E-102 3E-107 717.6 18.7 264 2-273 52-319 (319)
3 COG5237 PER1 Predicted membran 100.0 2.3E-85 5E-90 592.2 15.4 257 3-269 50-315 (319)
4 PF05875 Ceramidase: Ceramidas 97.6 0.0059 1.3E-07 56.0 17.6 186 52-262 24-236 (262)
5 PF03006 HlyIII: Haemolysin-II 97.5 0.0033 7.2E-08 55.2 13.5 154 99-254 44-219 (222)
6 PF12036 DUF3522: Protein of u 96.8 0.036 7.9E-07 49.0 13.3 93 103-203 34-138 (186)
7 TIGR01065 hlyIII channel prote 96.1 0.28 6.2E-06 43.6 14.8 150 99-258 39-198 (204)
8 PRK15087 hemolysin; Provisiona 95.8 0.43 9.2E-06 43.2 14.7 149 99-259 54-211 (219)
9 KOG0748 Predicted membrane pro 83.5 41 0.00089 31.8 18.4 154 113-269 98-275 (286)
10 PF10277 Frag1: Frag1/DRAM/Sfk 56.6 1.3E+02 0.0027 25.8 12.7 91 44-141 41-133 (215)
11 PF13965 SID-1_RNA_chan: dsRNA 53.8 1.1E+02 0.0024 31.9 10.1 31 236-266 528-561 (570)
12 COG1272 Predicted membrane pro 43.8 2.6E+02 0.0057 25.7 10.7 41 100-140 59-104 (226)
13 PF10709 DUF2511: Protein of u 31.8 18 0.0004 28.6 0.4 13 38-50 5-17 (87)
14 PF15174 PRNT: Prion-related p 23.3 35 0.00076 24.1 0.6 9 240-248 26-34 (51)
15 PF07695 7TMR-DISM_7TM: 7TM di 20.8 4.8E+02 0.011 21.5 8.0 30 122-152 63-92 (205)
No 1
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=100.00 E-value=3.1e-110 Score=768.14 Aligned_cols=254 Identities=47% Similarity=0.858 Sum_probs=234.1
Q ss_pred CccchhhhccCCCCCCCcccchHhHHHhHHhcCCCCcccccccCccccccccchHHHHHHHhHHHHHHHhHHHHHHHHHh
Q 023882 2 QEPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYY 81 (276)
Q Consensus 2 ~~pl~l~l~~W~C~~~C~Y~Cm~~~~~~~~~~g~~v~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~g~~~~~~~~~~ 81 (276)
++|+++|+++|||+|||||+|||++|++|+++|+|++||||||||+|++||||||||+||++|+++|++|++++++
T Consensus 2 ~~Pl~l~l~~W~C~~dC~Y~Cm~~~t~~r~~~g~~i~QfhGKWPF~Rv~GiQEp~Sv~FSllNl~~h~~~~~~~~~---- 77 (267)
T PF04080_consen 2 SLPLYLRLLGWDCESDCDYQCMWIITEERIKNGEPIVQFHGKWPFKRVLGIQEPASVLFSLLNLLAHYRGLRKFRR---- 77 (267)
T ss_pred CCCcchHhcCCCCchhCcCcCcHHHHHHHHHcCCCcccccccccchhhhcCchHHHHHHHHHhHHHHHHHHHHHHH----
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999988543
Q ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHHhHhhhhccCCCccchhhHHHhHHHHHHHHHHHHHHhcccc-chHHHHHHH
Q 023882 82 KLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNVR-DEAARVMVA 160 (276)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~aW~wStiFH~RD~~~TEklDYf~A~~~vl~~l~~~~~R~~~l~-~~~~r~~~~ 160 (276)
+.+.+.+.++ .|+++++||||||+||||||+||+++|||||||||+++|++|+|++++|+++++ ++..+.+++
T Consensus 78 ~~~~~~p~~~------~~~~~~~v~~naW~wStvFH~RD~~~TE~lDYf~A~a~vl~~l~~~~~R~f~l~~~~~~~~~~~ 151 (267)
T PF04080_consen 78 QVPRNSPMYP------YYIIYAIVSMNAWIWSTVFHTRDTPLTEKLDYFSAGATVLFGLYAAIVRIFRLYRRRRLRRIFT 151 (267)
T ss_pred hccCCCCCcC------eeehHHHHHHHHHHHHHHHHHhcccHhhHhHHhhhHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 3443333322 267899999999999999999999999999999999999999999999999994 455678899
Q ss_pred HHHHHHHHHHhhhcccccccccchhhhHHHHHHHHHHHHHHHHhhhcCCcc---------chHH--HHHHHHHHHHHhhh
Q 023882 161 APLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITRHPSR---------WKLW--VVVFGGALAMLLEI 229 (276)
Q Consensus 161 ~~~~~~~~~Hv~yL~~~~fdY~YNM~~nv~~G~~~~~lw~~~~~~~~~~~~---------~~~~--~~vv~~~~a~~LEl 229 (276)
++|+++|++||.||++.||||||||++||++|++|+++|+.|++.++++.+ ++++ ++++++.+||+|||
T Consensus 152 ~~~~~~~~~Hv~yL~~~~fdY~YNM~~nv~~G~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~lam~LEl 231 (267)
T PF04080_consen 152 ALCIAFYIAHVSYLSFVRFDYGYNMKANVAVGLLQNILWLLWSFRNYRRYPSVKKSYSKRWKLWPILFVVLTILAMSLEL 231 (267)
T ss_pred HHHHHHHHHHHHHccccccccHhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998765433 6777 77889999999999
Q ss_pred hcCCCcccchhhhHHhhhccchhHHHHHHHHHHHHh
Q 023882 230 YDFPPYYGFLDAHAIWHATTIPLTYIWWSFIRDDAE 265 (276)
Q Consensus 230 ~DFpP~~~~lDAHALWHl~Tip~~~~wy~fl~~D~~ 265 (276)
+||||+++++|||||||++||||+++||+|+++|+|
T Consensus 232 ~DFpP~~~~lDAHALWHl~Tip~~~~wy~Fl~~D~~ 267 (267)
T PF04080_consen 232 FDFPPIFWLLDAHALWHLATIPPTYLWYDFLIDDAE 267 (267)
T ss_pred hccCcccccchHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999986
No 2
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.3e-102 Score=717.58 Aligned_cols=264 Identities=49% Similarity=0.945 Sum_probs=246.9
Q ss_pred CccchhhhccCCCCCCCcccchHhHHHhHHhcCCCCcccccccCccccccccchHHHHHHHhHHHHHHHhHHHHHHHHHh
Q 023882 2 QEPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYY 81 (276)
Q Consensus 2 ~~pl~l~l~~W~C~~~C~Y~Cm~~~~~~~~~~g~~v~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~g~~~~~~~~~~ 81 (276)
..|++.|+..|||.+||+|+||+.++++|.++|+|++||||||||+||+||||||||+||++|+++|++|+.+ +
T Consensus 52 ~~~l~~r~~~wdc~s~C~Y~Cm~~t~~~~~~~~~pi~qfhGKWpFlrvlGiQEp~SviFS~lNl~~h~~g~~~------~ 125 (319)
T KOG2970|consen 52 FHPLYTRLWAWDCCSDCRYQCMWTTESEFIKRGGPIPQFHGKWPFLRVLGIQEPFSVIFSFLNLITHYKGLVK------F 125 (319)
T ss_pred cchhHHHHHhcCcchhcCceeeeeehhhHHhcCCccccccCCcchhhhhhccchHHHHHHHHHHHHHHHHHhh------e
Confidence 3499999999999999999999999999999999999999999999999999999999999999999999644 5
Q ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHHhHhhhhccCCCccchhhHHHhHHHHHHHHHHHHHHhccccch-HHHHHHH
Q 023882 82 KLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDE-AARVMVA 160 (276)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~aW~wStiFH~RD~~~TEklDYf~A~~~vl~~l~~~~~R~~~l~~~-~~r~~~~ 160 (276)
|.+.+++++.+|+ ++|++|+++|||||+||+|||+||+++|||||||+|+++|+||+|++++|+++++.. ..|.+++
T Consensus 126 r~~~~~~~~~r~~--~l~~I~a~i~mnawiwSsvFH~rD~~lTEklDYf~A~~~vlf~ly~a~ir~~~i~~~~~~~~~it 203 (319)
T KOG2970|consen 126 RRPKKPNRPTRYE--RLWLIYAYIGMNAWIWSSVFHIRDVPLTEKLDYFSAYLTVLFGLYVALIRMLSIQSLPALRGMIT 203 (319)
T ss_pred ecccCCCCcchhc--cchhhHHHHHHHHHHHHHhhhhcCCchHhhhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 6677777777777 689999999999999999999999999999999999999999999999999999876 6789999
Q ss_pred HHHHHHHHHHhhhcccccccccchhhhHHHHHHHHHHHHHHHHhh-hcCCccchHHHH--HHHHHHHHHhhhhcCCCccc
Q 023882 161 APLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGI-TRHPSRWKLWVV--VFGGALAMLLEIYDFPPYYG 237 (276)
Q Consensus 161 ~~~~~~~~~Hv~yL~~~~fdY~YNM~~nv~~G~~~~~lw~~~~~~-~~~~~~~~~~~~--vv~~~~a~~LEl~DFpP~~~ 237 (276)
++++++|+.|+.|||+++|||||||++|+++|++|+++|..|+++ +++|+.++++++ +.++.+||+||++||||+.|
T Consensus 204 a~fla~ya~Hi~yls~~~fdYgyNm~~~v~~g~iq~vlw~~~~~~~~~~~s~~~i~~~~i~~~~~LA~sLEi~DFpPy~~ 283 (319)
T KOG2970|consen 204 AIFLAFYANHILYLSFYNFDYGYNMIVCVAIGVIQLVLWLVWSFKKRNLPSFWRIWPILIVIFFFLAMSLEIFDFPPYAW 283 (319)
T ss_pred HHHHHHHHHHHHHHhheecccccceeeehhhHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHHHHhhcCCchhh
Confidence 999999999999999999999999999999999999999999954 578888887654 44569999999999999999
Q ss_pred chhhhHHhhhccchhHHHHHHHHHHHHhHHHHhhhh
Q 023882 238 FLDAHAIWHATTIPLTYIWWSFIRDDAEFQTANMLK 273 (276)
Q Consensus 238 ~lDAHALWHl~Tip~~~~wy~fl~~D~~~~~~~~~~ 273 (276)
++|||||||++|||++++||+|+.+|+++.+++++|
T Consensus 284 ~iDAHALWHlaTIplt~~~~~Fv~~d~~~~t~~~l~ 319 (319)
T KOG2970|consen 284 LIDAHALWHLATIPLTILWYDFVSDDYDFATGVRLK 319 (319)
T ss_pred hcchHHHHHhhcCccHHHHHHHhhchhhhhcceecC
Confidence 999999999999999999999999999999987765
No 3
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.3e-85 Score=592.20 Aligned_cols=257 Identities=32% Similarity=0.474 Sum_probs=228.7
Q ss_pred ccchhhhccCCCCCCCcccchHhHHHhHHhcCCCCcccccccCccccccccchHHHHHHHhHHHHHHHhHHHHHHHHHhh
Q 023882 3 EPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYK 82 (276)
Q Consensus 3 ~pl~l~l~~W~C~~~C~Y~Cm~~~~~~~~~~g~~v~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~g~~~~~~~~~~~ 82 (276)
.|++.++++|||.|+|+|+|+...++-+.++++|+.||||||||.||+||||++|++||++|+++||+|+.++ +++
T Consensus 50 ~pL~~klf~wDc~s~cgy~C~~~~~~~~~~~n~~~~q~hGkW~F~rVlG~qEfFS~~FS~~Nfi~hy~gfh~m----~r~ 125 (319)
T COG5237 50 FPLVDKLFGWDCDSKCGYMCHLLCLKFTNSGNIKIYQRHGKWGFQRVLGMQEFFSALFSFMNFITHYIGFHRM----LRK 125 (319)
T ss_pred ccHHHHHHcCccccccchHHHHHHHHHhccCCchhhhhcCccceeeehhHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999773 234
Q ss_pred CCCC-CCccccccchhhHHHHHHHHHHHHHhHhhhhccCCCccchhhHHHhHHHHHHHHHHHHHHhccccc----hHHHH
Q 023882 83 LPLK-QTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRD----EAARV 157 (276)
Q Consensus 83 ~~~~-~~~~~~~~~~~~~~~~~~v~~~aW~wStiFH~RD~~~TEklDYf~A~~~vl~~l~~~~~R~~~l~~----~~~r~ 157 (276)
.++. +.++.++ ++++++||+||+||+|||+||+++|||+|||+|+++|++|+|++.+|+.++.. +..|.
T Consensus 126 i~~e~~~~R~~~------l~wv~igmlAwi~SsvFHird~~iTeklDYF~AgltVLfGfy~~lvrm~~~~~~p~~K~~~~ 199 (319)
T COG5237 126 ILRETRLGRLYY------LQWVYIGMLAWISSSVFHIRDNTITEKLDYFLAGLTVLFGFYMALVRMILIVSPPIEKATRG 199 (319)
T ss_pred hcccccccceEE------eeHHHHHHHHHHHHhheeeeccchhhhHHHHHhhHHHHHHHHHHHHHHHHhhcCchHHHHHh
Confidence 4433 3344343 34579999999999999999999999999999999999999999999998753 44577
Q ss_pred HHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHHHHHHHHHHHhhhcCC--ccchHH--HHHHHHHHHHHhhhhcCC
Q 023882 158 MVAAPLLAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITRHP--SRWKLW--VVVFGGALAMLLEIYDFP 233 (276)
Q Consensus 158 ~~~~~~~~~~~~Hv~yL~~~~fdY~YNM~~nv~~G~~~~~lw~~~~~~~~~~--~~~~~~--~~vv~~~~a~~LEl~DFp 233 (276)
..+++++++|++||.||++++|||+|||++|+++|+.|++||.+.+..+++. ..+|-+ .+|..+.+|+|+||+|||
T Consensus 200 ~~~aifia~fa~Hi~rls~i~fdY~YNm~~n~aigv~q~iL~~~~s~~ny~~~g~~~kr~p~~~v~~~~lA~slElfDf~ 279 (319)
T COG5237 200 PLQAIFIAFFAYHIHRLSNIEFDYVYNMISNCAIGVTQTILSHLVSFLNYRKLGHTFKRIPLFFVFFFFLAGSLELFDFP 279 (319)
T ss_pred HHHHHHHHHHHHHHHHHhhccceeeehhhhcchHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHHHHhhhhhhhccC
Confidence 7789999999999999999999999999999999999999999999887654 223332 456778899999999999
Q ss_pred CcccchhhhHHhhhccchhHHHHHHHHHHHHhHHHH
Q 023882 234 PYYGFLDAHAIWHATTIPLTYIWWSFIRDDAEFQTA 269 (276)
Q Consensus 234 P~~~~lDAHALWHl~Tip~~~~wy~fl~~D~~~~~~ 269 (276)
|+-+++||||||||.|+|++.+.|+|..+|+.|.-+
T Consensus 280 pya~lIDaHAlWHL~t~~~t~~ly~F~~~d~~y~~n 315 (319)
T COG5237 280 PYAYLIDAHALWHLITCISTPFLYLFWSGDVYYHGN 315 (319)
T ss_pred cHHHHhhHHHHhHhhhccchHHHHHhhhcceeeecc
Confidence 999999999999999999999999999999887554
No 4
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=97.62 E-value=0.0059 Score=56.05 Aligned_cols=186 Identities=16% Similarity=0.070 Sum_probs=95.4
Q ss_pred ccchHHHHHHHhHHHHHHHhHHHHHHHHHhhCCCCCCccccccchhhHHHHHHHHHHHHHhHhhhhccCCCccchhhHHH
Q 023882 52 IQEPASVAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSS 131 (276)
Q Consensus 52 iQEp~SvlFSllNl~~h~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aW~wStiFH~RD~~~TEklDYf~ 131 (276)
+=||.=++-++.=+++-..|+++. ++ .+.+. .. ...+..+..++ +-|+.||+-=...|+-+|=..
T Consensus 24 iAEf~NtlSNl~fi~~al~gl~~~----~~---~~~~~-~~------~l~~~~l~~VG-iGS~~FHaTl~~~~ql~DelP 88 (262)
T PF05875_consen 24 IAEFWNTLSNLAFIVAALYGLYLA----RR---RGLER-RF------ALLYLGLALVG-IGSFLFHATLSYWTQLLDELP 88 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH----hh---ccccc-hh------HHHHHHHHHHH-HhHHHHHhChhhhHHHhhhhh
Confidence 569998887777777777666542 11 11111 11 12233334444 899999998889999999766
Q ss_pred hHHHHHHHHHHHHHHhccccchHHHHHHHHHH----HHHHHHHhhhcccccccccchhhhHHHHHHHHHHHHHHHHh--h
Q 023882 132 AVALLGFSLILAILRSFNVRDEAARVMVAAPL----LAFVTTHILYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAG--I 205 (276)
Q Consensus 132 A~~~vl~~l~~~~~R~~~l~~~~~r~~~~~~~----~~~~~~Hv~yL~~~~fdY~YNM~~nv~~G~~~~~lw~~~~~--~ 205 (276)
-.-..+..++....+.. .++..|......+ ++.-+.|...= +. . .-++.+|.....+.+.-.. .
T Consensus 89 Ml~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~~~~~t~~~~~~~---~p-~----~~~~~f~~~~~~~~~~~~~~~~ 158 (262)
T PF05875_consen 89 MLWATLLFLYIVLTRRY--SSPRYRLALPLLLFIYAVVVTVLYFVLD---NP-V----FHQIAFASLVLLVILRSIYLIR 158 (262)
T ss_pred HHHHHHHHHHHHhcccc--cCchhhHHHHHHHHHHHHHHHHHHhhhc---cc-h----hhhhhHHHHHHHHHHHHHHHHH
Confidence 54333333343333333 1111122222111 11222333211 11 1 1122233322222221111 1
Q ss_pred h------cCCccchHH-HHHHHHHHHHHhhhhcC--------------CCcccchhhhHHhhhccchhHHHHHHHHHH
Q 023882 206 T------RHPSRWKLW-VVVFGGALAMLLEIYDF--------------PPYYGFLDAHAIWHATTIPLTYIWWSFIRD 262 (276)
Q Consensus 206 ~------~~~~~~~~~-~~vv~~~~a~~LEl~DF--------------pP~~~~lDAHALWHl~Tip~~~~wy~fl~~ 262 (276)
. +++...++. .-++...+|..+-..|- .|+..++--|++||+.|---+++...+.+-
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~~~~ 236 (262)
T PF05875_consen 159 RRVRDACRRRRARRLLLFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYLLIVFVAY 236 (262)
T ss_pred HhcCchhhchHHHHHHHHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112222332 33455567888888886 356667789999999998888887777554
No 5
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=97.48 E-value=0.0033 Score=55.17 Aligned_cols=154 Identities=17% Similarity=0.200 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhHhhhhc-------cCCCccchhhHHHhHHHHHHHHHHHHHHhccccchHHHHHHHHH-HHHHHHHH
Q 023882 99 WHIYGFLSMNSWFWSAVFHS-------RDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAP-LLAFVTTH 170 (276)
Q Consensus 99 ~~~~~~v~~~aW~wStiFH~-------RD~~~TEklDYf~A~~~vl~~l~~~~~R~~~l~~~~~r~~~~~~-~~~~~~~H 170 (276)
..+|.+..+...+.||++|+ +.-..-.|+||.+-...+..+..-...-.+.-++.......... ++++....
T Consensus 44 ~~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~~gI~l~i~gs~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 123 (222)
T PF03006_consen 44 FLIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDYAGIFLLIAGSYTPFIYYGFYCHPWLGWFYLAFIWILALIGIV 123 (222)
T ss_pred HHHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcchhhhhHhHhhhhhhHHHhhccccchHHHHHHHHHHHHHHHhHH
Confidence 34566767777899999999 34566779999997766665544333333311222222111111 11111111
Q ss_pred hhhccccccc----ccchhhhHHHHHHHHHHHHHHHHhhhc---CCc-cchHHHHHHHHHHHHHhhhhcCCCcc--cc--
Q 023882 171 ILYLNFYKLD----YGWNMKVCVVMAVAQLLIWATWAGITR---HPS-RWKLWVVVFGGALAMLLEIYDFPPYY--GF-- 238 (276)
Q Consensus 171 v~yL~~~~fd----Y~YNM~~nv~~G~~~~~lw~~~~~~~~---~~~-~~~~~~~vv~~~~a~~LEl~DFpP~~--~~-- 238 (276)
..+ ...++ ..--+.+-++.|....+...-...... .+. ......-.++-.+|+.+-..++|.-+ +-
T Consensus 124 -~~~-~~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD 201 (222)
T PF03006_consen 124 -LSL-FPCFSSPRFRWLRTIFFLLLGWSGIIPIFHRIFFLGGWGSPDPLWLLILGGVLYLLGAVFYATRIPERWFPGKFD 201 (222)
T ss_pred -hhc-chhhcCCccceeeehHhHHHHHHHHhhhHHHHHHhccccchHHHHHHHHHHHHHHHhHHHhhhccccccCCCCcC
Confidence 111 11211 222333444555544444332121111 111 11112223445678889999977633 22
Q ss_pred --hhhhHHhhhccchhHH
Q 023882 239 --LDAHAIWHATTIPLTY 254 (276)
Q Consensus 239 --lDAHALWHl~Tip~~~ 254 (276)
.-+|.+||+.++--+.
T Consensus 202 ~~g~sHqi~Hi~v~~~~~ 219 (222)
T PF03006_consen 202 IWGHSHQIWHIFVVLAAL 219 (222)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 4499999998765443
No 6
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=96.82 E-value=0.036 Score=49.03 Aligned_cols=93 Identities=13% Similarity=0.180 Sum_probs=52.0
Q ss_pred HHHHHHHHHhHhhhhccC-CC----cc----chhhHHHhHHHHHHHHHHHHHHhccccchHHH--HHHHHHHHHHHHHHh
Q 023882 103 GFLSMNSWFWSAVFHSRD-VD----LT----EKFDYSSAVALLGFSLILAILRSFNVRDEAAR--VMVAAPLLAFVTTHI 171 (276)
Q Consensus 103 ~~v~~~aW~wStiFH~RD-~~----~T----EklDYf~A~~~vl~~l~~~~~R~~~l~~~~~r--~~~~~~~~~~~~~Hv 171 (276)
+.++..+=++|+.+|+.| .+ ++ ++|||......++ +..+.++..-++++...+ ..+++.++++..
T Consensus 34 a~v~~~tm~~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~~s~~-~~~vtl~~~a~~~~~~~~~l~~~~~~~~ai~~--- 109 (186)
T PF12036_consen 34 AFVYTFTMFFSTFYHACDSGPGEIFLCIMDWHRLQNIDFIGSFL-SIWVTLCAMARLDEPLKSVLHYFGALVIAIFQ--- 109 (186)
T ss_pred HHHHHHHHHHHHhcccccCCCCceEEeechHHHHHHHHHHHHHH-HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH---
Confidence 678888999999999999 55 44 4788877664433 233333444444443322 223333332221
Q ss_pred hhcccccccccchhhhHHHHHHH-HHHHHHHHH
Q 023882 172 LYLNFYKLDYGWNMKVCVVMAVA-QLLIWATWA 203 (276)
Q Consensus 172 ~yL~~~~fdY~YNM~~nv~~G~~-~~~lw~~~~ 203 (276)
. ..+||+. |+..-+++|++ =.+-|+..+
T Consensus 110 -~--~~~~~~~-~~~~Pi~~~~~i~~~~w~~r~ 138 (186)
T PF12036_consen 110 -Q--KDRWSLW-NTIGPILIGLLILLVSWLYRC 138 (186)
T ss_pred -h--hCcccch-hhHHHHHHHHHHHHHHHheec
Confidence 2 3478854 66666666653 344455444
No 7
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=96.14 E-value=0.28 Score=43.63 Aligned_cols=150 Identities=15% Similarity=0.180 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhHhhhhccCCC-----ccchhhHHHhHHHHHHHHHHHHHHhccccchHHHHHHHHH-HHHHH-HHHh
Q 023882 99 WHIYGFLSMNSWFWSAVFHSRDVD-----LTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAP-LLAFV-TTHI 171 (276)
Q Consensus 99 ~~~~~~v~~~aW~wStiFH~RD~~-----~TEklDYf~A~~~vl~~l~~~~~R~~~l~~~~~r~~~~~~-~~~~~-~~Hv 171 (276)
..+|..-.+..-..||+||+-+.. +-+|+||.+-..+|.-+..-...-.+. .+....+..+. .+++. +.+-
T Consensus 39 ~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~lIaGsytP~~~~~~~--~~~~~~~~~~iw~la~~gi~~~ 116 (204)
T TIGR01065 39 FSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYVLIAGTYTPFLLLALP--GPLGWTVLWIIWGLAIGGIIYK 116 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHHHHHHhhHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHH
Confidence 456777788889999999988731 456889998776666554433333332 22222122211 11111 1111
Q ss_pred hhcccccccccchhhhHHHHHHHHHHHHHHHHhhhcCCccchHHHHH---HHHHHHHHhhhhcCCCcccchhhhHHhhhc
Q 023882 172 LYLNFYKLDYGWNMKVCVVMAVAQLLIWATWAGITRHPSRWKLWVVV---FGGALAMLLEIYDFPPYYGFLDAHAIWHAT 248 (276)
Q Consensus 172 ~yL~~~~fdY~YNM~~nv~~G~~~~~lw~~~~~~~~~~~~~~~~~~v---v~~~~a~~LEl~DFpP~~~~lDAHALWHl~ 248 (276)
.+...+++. .-...=++.|.+..+..-.. .+..+. .-...++ +.-+.++.+=..|+|--+ |-|.+||+.
T Consensus 117 -~~~~~~~r~-~r~~~y~~~G~~~v~~~~~~--~~~~~~-~~~~~l~~gg~~Y~~G~~fY~~~~p~~~---~~H~iwH~f 188 (204)
T TIGR01065 117 -LFFHKRPRW-LSLFLYLIMGWLVVLVIKPL--YHNLPG-AGFSLLAAGGLLYTVGAIFYALKWPIPF---TYHAIWHLF 188 (204)
T ss_pred -HHccCCCch-hHHHHHHHHHHHHHHHHHHH--HHhCCH-HHHHHHHHHhHHHHcchHheeecCCCCC---CcChHHHHH
Confidence 111223331 23333344443333321111 111121 1112111 223456667777877433 229999998
Q ss_pred cchhHHHHHH
Q 023882 249 TIPLTYIWWS 258 (276)
Q Consensus 249 Tip~~~~wy~ 258 (276)
.+-=+...|-
T Consensus 189 V~~g~~~h~~ 198 (204)
T TIGR01065 189 VLGASACHFV 198 (204)
T ss_pred HHHHHHHHHH
Confidence 8766655543
No 8
>PRK15087 hemolysin; Provisional
Probab=95.83 E-value=0.43 Score=43.20 Aligned_cols=149 Identities=16% Similarity=0.210 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhHhhhhccCCC----ccchhhHHHhHHHHHHHHHHHHHHhccccchHHHHHHHHH-HHHHHHHHhhh
Q 023882 99 WHIYGFLSMNSWFWSAVFHSRDVD----LTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAP-LLAFVTTHILY 173 (276)
Q Consensus 99 ~~~~~~v~~~aW~wStiFH~RD~~----~TEklDYf~A~~~vl~~l~~~~~R~~~l~~~~~r~~~~~~-~~~~~~~Hv~y 173 (276)
..+|+.-.+..-..||+||+=..+ +=+|+||.+-..+|.-+..=...-.+ +....+.++.+. .+++.. =+..
T Consensus 54 ~~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~~I~llIaGsytP~~~~~~--~~~~~~~l~~~iW~~a~~G-i~~~ 130 (219)
T PRK15087 54 YSLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHCAIYLLIAGTYTPFLLVGL--DSPLARGLMIVIWSLALLG-ILFK 130 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHHHHHHHHHHhhHHHHHHHc--cCHHHHHHHHHHHHHHHHH-HHHH
Confidence 356777778889999999986521 23469999866655544332222222 222222222111 111111 1112
Q ss_pred c-ccccccccchhhhHHHHHHHHHHHHHHHHhhhcCCccchHHHHHH---HHHHHHHhhhhcCCCcccchhhhHHhhhcc
Q 023882 174 L-NFYKLDYGWNMKVCVVMAVAQLLIWATWAGITRHPSRWKLWVVVF---GGALAMLLEIYDFPPYYGFLDAHAIWHATT 249 (276)
Q Consensus 174 L-~~~~fdY~YNM~~nv~~G~~~~~lw~~~~~~~~~~~~~~~~~~vv---~~~~a~~LEl~DFpP~~~~lDAHALWHl~T 249 (276)
+ ...+|+ ...+..=++.|.+..+.-.-+ ....+. .-+..++. .-+.++.+=..|-+|+ +|++||+..
T Consensus 131 ~~~~~~~r-~l~~~~Yl~mGw~~v~~~~~l--~~~~~~-~~l~~l~~GG~~Y~~G~~fY~~~~~p~-----~H~IwH~fV 201 (219)
T PRK15087 131 LAFAHRFK-VLSLVTYLAMGWLSLIVIYQL--AIKLAI-GGVTLLAVGGVVYSLGVIFYVCKRIPY-----NHAIWHGFV 201 (219)
T ss_pred HHhcCCCc-hHHHHHHHHHHHHHHHHHHHH--HHhCCH-HHHHHHHHHhHHHHhhHHHHccCCCCC-----chhHHHHHH
Confidence 2 123444 234445555555444322211 111221 11111222 2245566666776665 899999988
Q ss_pred chhHHHHHHH
Q 023882 250 IPLTYIWWSF 259 (276)
Q Consensus 250 ip~~~~wy~f 259 (276)
+-=+...|--
T Consensus 202 l~ga~~H~~a 211 (219)
T PRK15087 202 LGGSVCHFLA 211 (219)
T ss_pred HHHHHHHHHH
Confidence 7766665543
No 9
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=83.47 E-value=41 Score=31.83 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=83.5
Q ss_pred HhhhhccCCCccc-------hhhHHHhHHHHHHHHHHHHHHhccccchHHHHHH-HHHHHHHHHHHhhhcccccc--ccc
Q 023882 113 SAVFHSRDVDLTE-------KFDYSSAVALLGFSLILAILRSFNVRDEAARVMV-AAPLLAFVTTHILYLNFYKL--DYG 182 (276)
Q Consensus 113 StiFH~RD~~~TE-------klDYf~A~~~vl~~l~~~~~R~~~l~~~~~r~~~-~~~~~~~~~~Hv~yL~~~~f--dY~ 182 (276)
|+++|+=-.- .| ||||.+-.+.+.-+......-.|.-... .|.+. .+.++...++=+.-+ ..++ .+-
T Consensus 98 S~~~H~~~~~-s~~~~~~~~~lDY~GIs~li~gS~~~~~yy~f~c~~~-~~~iy~~~~~~lgi~~~~~~l-~~~~~~~~~ 174 (286)
T KOG0748|consen 98 SSLYHLFSCH-SEKVSRFFLKLDYAGISLLIIGSFLPIIYYAFYCHPF-FRLIYLPIILVLGLLAIFVSL-SDKFRTPKR 174 (286)
T ss_pred HHHHHHHhcc-cHHHHHHHHHccHHhhHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHHheeec-hhhhCCccc
Confidence 9999985555 44 6899997777666655544433432222 22122 111111111101111 1122 123
Q ss_pred chhhhHHHHHHHH-HHHHHHHHhhh---cCCc-cc---hHHHHHHHHHHHHHhhhhcCCCcc--cchhh----hHHhhhc
Q 023882 183 WNMKVCVVMAVAQ-LLIWATWAGIT---RHPS-RW---KLWVVVFGGALAMLLEIYDFPPYY--GFLDA----HAIWHAT 248 (276)
Q Consensus 183 YNM~~nv~~G~~~-~~lw~~~~~~~---~~~~-~~---~~~~~vv~~~~a~~LEl~DFpP~~--~~lDA----HALWHl~ 248 (276)
-+-+++++++... .++=+.+.... +.+. .. ....-.++..+|..+=....|--+ +.+|- |-+||..
T Consensus 175 r~~R~~~f~~~~~~~i~P~~h~~~~~g~~~~~~~~~~~~~~~~~~~yi~ga~fY~~riPER~~PGkfD~~G~SHQifHv~ 254 (286)
T KOG0748|consen 175 RPLRAGVFLLLGLSGILPLLHRLILFGGRGPEVVIALGYVILMAVLYLLGALFYATRIPERWFPGKFDIWGHSHQIFHVL 254 (286)
T ss_pred hhhHHHHHHHHHHhhccHhhhheeeecCCccceehhhhHHHHHHHHHHHHHHHhhcCCCcccCCCccceeCChhHHHHHH
Confidence 4677777776532 12111121111 1000 11 111234455677888888888743 35564 9999999
Q ss_pred cchhHHHHHHHHHHHHhHHHH
Q 023882 249 TIPLTYIWWSFIRDDAEFQTA 269 (276)
Q Consensus 249 Tip~~~~wy~fl~~D~~~~~~ 269 (276)
.+--++.+++=.+.|.+.+.+
T Consensus 255 vv~~a~~~~~a~~~~~~~~~~ 275 (286)
T KOG0748|consen 255 VVLAALFHLEAVLLDYEWRHS 275 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998765
No 10
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=56.57 E-value=1.3e+02 Score=25.76 Aligned_cols=91 Identities=25% Similarity=0.355 Sum_probs=55.0
Q ss_pred cCccccccccchHHHHHHHhHHHHHHHhHHHHHHHHHhh-C-CCCCCccccccchhhHHHHHHHHHHHHHhHhhhhccCC
Q 023882 44 WPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYK-L-PLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDV 121 (276)
Q Consensus 44 WPF~Rv~GiQEp~SvlFSllNl~~h~~g~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~v~~~aW~wStiFH~RD~ 121 (276)
+|+.-=.|-++|-+-+|+++-.+.-.-..-. ...+++ . +..++.+.. ....-.+.++++..+-+--+.|+..|.
T Consensus 41 ~P~IS~~G~~~Pe~~if~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~~gl~~~a~~~~~~~ 116 (215)
T PF10277_consen 41 LPYISDIGAYPPESYIFRFGLNISAFFRLLI--VYLRYRYVRQLASKCSRW--LNILSLVFGLLSAIGLILLAIFQSTEH 116 (215)
T ss_pred cCchhHhhCcCchhHHHHHHHHHHHHHHHHH--HHHHHHHHhhhccchhhH--HHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 9999999999999999998766544332211 111222 1 111111111 222345677888888888999988887
Q ss_pred CccchhhHHHhHHHHHHHHH
Q 023882 122 DLTEKFDYSSAVALLGFSLI 141 (276)
Q Consensus 122 ~~TEklDYf~A~~~vl~~l~ 141 (276)
+ ..-+.+|......+..
T Consensus 117 ~---~~H~~~a~~ff~~~~i 133 (215)
T PF10277_consen 117 P---TVHYIGAVLFFVSSFI 133 (215)
T ss_pred H---HHHHHHHHHHHHHHHH
Confidence 7 4556666655444433
No 11
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=53.80 E-value=1.1e+02 Score=31.91 Aligned_cols=31 Identities=29% Similarity=0.594 Sum_probs=20.4
Q ss_pred ccchhhhHHhhhccch---hHHHHHHHHHHHHhH
Q 023882 236 YGFLDAHAIWHATTIP---LTYIWWSFIRDDAEF 266 (276)
Q Consensus 236 ~~~lDAHALWHl~Tip---~~~~wy~fl~~D~~~ 266 (276)
.+..|.|-+||..... .+++.-.++-||.+.
T Consensus 528 ~~f~D~HDiwH~~SA~alffsf~~l~~lDddL~~ 561 (570)
T PF13965_consen 528 LGFFDWHDIWHFLSAIALFFSFLVLLTLDDDLDN 561 (570)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4678999999996643 344445555555543
No 12
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=43.79 E-value=2.6e+02 Score=25.69 Aligned_cols=41 Identities=29% Similarity=0.387 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhHhhhhccCC-----CccchhhHHHhHHHHHHHH
Q 023882 100 HIYGFLSMNSWFWSAVFHSRDV-----DLTEKFDYSSAVALLGFSL 140 (276)
Q Consensus 100 ~~~~~v~~~aW~wStiFH~RD~-----~~TEklDYf~A~~~vl~~l 140 (276)
.+|..--+..-..||++|+=-. .+=+|+||.+-..++.-+-
T Consensus 59 ~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH~~I~vLIAgSy 104 (226)
T COG1272 59 SIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDHSGIYVLIAGSY 104 (226)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccHHHHHHHHHHhh
Confidence 4566655667899999997543 4668999998766655443
No 13
>PF10709 DUF2511: Protein of unknown function (DUF2511); InterPro: IPR019648 This entry is represented by Bacteriophage PsP3, Gp28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=31.79 E-value=18 Score=28.59 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=10.5
Q ss_pred cccccccCccccc
Q 023882 38 VKYHGKWPFIRVY 50 (276)
Q Consensus 38 ~QFhGKWPF~Rv~ 50 (276)
.||-+||||.|==
T Consensus 5 ~~fG~~Wpft~ee 17 (87)
T PF10709_consen 5 FEFGDKWPFTVEE 17 (87)
T ss_pred HHccCCCCceeee
Confidence 3788999999863
No 14
>PF15174 PRNT: Prion-related protein testis-specific
Probab=23.27 E-value=35 Score=24.10 Aligned_cols=9 Identities=33% Similarity=0.984 Sum_probs=7.1
Q ss_pred hhhHHhhhc
Q 023882 240 DAHAIWHAT 248 (276)
Q Consensus 240 DAHALWHl~ 248 (276)
-.|||||+-
T Consensus 26 vthSLW~Lq 34 (51)
T PF15174_consen 26 VTHSLWHLQ 34 (51)
T ss_pred HHHHHHhhc
Confidence 469999984
No 15
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=20.77 E-value=4.8e+02 Score=21.49 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=15.6
Q ss_pred CccchhhHHHhHHHHHHHHHHHHHHhccccc
Q 023882 122 DLTEKFDYSSAVALLGFSLILAILRSFNVRD 152 (276)
Q Consensus 122 ~~TEklDYf~A~~~vl~~l~~~~~R~~~l~~ 152 (276)
.+.+++++.+......+... -..+.++.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~-F~~~~l~~~~ 92 (205)
T PF07695_consen 63 WWSQHLEYLFLMLSFIFFLL-FVRSFLELKR 92 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhCccc
Confidence 46677777776555433333 2234455533
Done!