Query 023882
Match_columns 276
No_of_seqs 109 out of 222
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lbw_A M2 protein; proton chan 28.7 51 0.0017 19.0 2.6 15 187-201 5-19 (23)
2 3bkd_A Transmembrane domain of 26.3 57 0.002 19.2 2.6 14 188-201 9-22 (26)
3 2kih_A Matrix protein 2; S31N, 19.0 86 0.0029 20.5 2.6 18 187-204 12-29 (43)
4 2ljb_A M2 protein, BM2 protein 16.9 1.1E+02 0.0037 19.3 2.6 16 187-202 12-27 (35)
5 3ux4_A Acid-activated UREA cha 16.0 3.7E+02 0.013 23.1 6.8 29 127-155 73-104 (195)
6 2hm3_A Nematocyst outer WALL a 8.9 1.2E+02 0.0042 18.2 1.1 11 13-23 7-17 (31)
7 2ra6_A Trichosurin; lipocalin, 8.8 81 0.0028 24.8 0.3 18 32-49 16-33 (166)
8 2k8j_X P7TM2; P7 polypeptide, 8.1 38 0.0013 20.7 -1.5 9 39-47 9-17 (29)
9 2ckx_A NGTRF1, telomere bindin 6.3 96 0.0033 22.9 -0.4 9 237-245 72-80 (83)
10 3ebk_A Allergen BLA G 4; beta 6.2 98 0.0034 25.9 -0.4 15 32-46 17-31 (176)
No 1
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=28.73 E-value=51 Score=18.99 Aligned_cols=15 Identities=20% Similarity=0.720 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHH
Q 023882 187 VCVVMAVAQLLIWAT 201 (276)
Q Consensus 187 ~nv~~G~~~~~lw~~ 201 (276)
+.-++|+++.++|++
T Consensus 5 aa~iigIlHLiLwIl 19 (23)
T 3lbw_A 5 AASIIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 344689999999985
No 2
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=26.27 E-value=57 Score=19.24 Aligned_cols=14 Identities=21% Similarity=0.767 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q 023882 188 CVVMAVAQLLIWAT 201 (276)
Q Consensus 188 nv~~G~~~~~lw~~ 201 (276)
.-++|+++.++|++
T Consensus 9 a~iiGilHLiLwIl 22 (26)
T 3bkd_A 9 ASIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34689999999985
No 3
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=18.98 E-value=86 Score=20.52 Aligned_cols=18 Identities=11% Similarity=0.355 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 023882 187 VCVVMAVAQLLIWATWAG 204 (276)
Q Consensus 187 ~nv~~G~~~~~lw~~~~~ 204 (276)
+.-++|+++.++|++=-+
T Consensus 12 aa~iiGIlHLiLwildRl 29 (43)
T 2kih_A 12 AANIIGILHLILWILDRL 29 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344689999999986543
No 4
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=16.87 E-value=1.1e+02 Score=19.35 Aligned_cols=16 Identities=6% Similarity=0.480 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 023882 187 VCVVMAVAQLLIWATW 202 (276)
Q Consensus 187 ~nv~~G~~~~~lw~~~ 202 (276)
+.-++|+++.++|++=
T Consensus 12 aA~IigiLHlilWild 27 (35)
T 2ljb_A 12 AASIIGILHFIAWTIG 27 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3446899999999853
No 5
>3ux4_A Acid-activated UREA channel; transport protein; HET: XP4; 3.26A {Helicobacter pylori}
Probab=15.97 E-value=3.7e+02 Score=23.12 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=21.5
Q ss_pred hhHHHhHHHHHHH---HHHHHHHhccccchHH
Q 023882 127 FDYSSAVALLGFS---LILAILRSFNVRDEAA 155 (276)
Q Consensus 127 lDYf~A~~~vl~~---l~~~~~R~~~l~~~~~ 155 (276)
.||++|+...+|+ +|+++-|.++++.+..
T Consensus 73 ~~~ya~a~~lLFgFTYL~Vain~~~~lD~rgl 104 (195)
T 3ux4_A 73 TSFYGPATGLLFGFTYLYAAINHTFGLDWRPY 104 (195)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCCCcch
Confidence 6688887777887 5668889999887653
No 6
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=8.91 E-value=1.2e+02 Score=18.21 Aligned_cols=11 Identities=36% Similarity=0.978 Sum_probs=6.9
Q ss_pred CCCCCCcccch
Q 023882 13 DCLSDCRYNCM 23 (276)
Q Consensus 13 ~C~~~C~Y~Cm 23 (276)
+|++-|.=+|-
T Consensus 7 tcpsgcsgdcy 17 (31)
T 2hm3_A 7 TCPSGCSGDCY 17 (31)
T ss_dssp CCCTTCCGGGT
T ss_pred cCCCCcCcccc
Confidence 67776665553
No 7
>2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A
Probab=8.77 E-value=81 Score=24.76 Aligned_cols=18 Identities=6% Similarity=0.084 Sum_probs=5.6
Q ss_pred hcCCCCcccccccCcccc
Q 023882 32 ALGHGPVKYHGKWPFIRV 49 (276)
Q Consensus 32 ~~g~~v~QFhGKWPF~Rv 49 (276)
..+....||-|||=-.-.
T Consensus 16 ~~~fd~~~~~G~Wy~ia~ 33 (166)
T 2ra6_A 16 EKERKWEQLSRHWHTVVL 33 (166)
T ss_dssp ----------CBCEEEEE
T ss_pred ccCCCchhcceEeEEEEE
Confidence 456678999999965543
No 8
>2k8j_X P7TM2; P7 polypeptide, HCV, ION chaneling, transmembrane, viral Pro; NMR {Synthetic}
Probab=8.14 E-value=38 Score=20.71 Aligned_cols=9 Identities=33% Similarity=1.069 Sum_probs=5.9
Q ss_pred ccccccCcc
Q 023882 39 KYHGKWPFI 47 (276)
Q Consensus 39 QFhGKWPF~ 47 (276)
-++|+||+.
T Consensus 9 ~~~g~Wpll 17 (29)
T 2k8j_X 9 ALYGVWPLL 17 (29)
T ss_dssp HHHHHHHHH
T ss_pred HHHhHHHHH
Confidence 357778763
No 9
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=6.29 E-value=96 Score=22.90 Aligned_cols=9 Identities=56% Similarity=1.003 Sum_probs=6.8
Q ss_pred cchhhhHHh
Q 023882 237 GFLDAHAIW 245 (276)
Q Consensus 237 ~~lDAHALW 245 (276)
+++||||.|
T Consensus 72 rv~~~~a~~ 80 (83)
T 2ckx_A 72 RVLAAHAYW 80 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 577888877
No 10
>3ebk_A Allergen BLA G 4; beta barrel, cockroach, glycoprotein, secreted; 1.90A {Blattella germanica}
Probab=6.20 E-value=98 Score=25.90 Aligned_cols=15 Identities=13% Similarity=0.426 Sum_probs=11.3
Q ss_pred hcCCCCcccccccCc
Q 023882 32 ALGHGPVKYHGKWPF 46 (276)
Q Consensus 32 ~~g~~v~QFhGKWPF 46 (276)
..+-...||.|||==
T Consensus 17 v~nFDl~RYlGkWYE 31 (176)
T 3ebk_A 17 VPNLDYERFRGSWII 31 (176)
T ss_dssp CTTCCHHHHCEEEEE
T ss_pred cCCcChHHcCeeeEE
Confidence 355677899999964
Done!