Query 023882
Match_columns 276
No_of_seqs 109 out of 222
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 14:22:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023882.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023882hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x5wa1 g.37.1.1 (A:8-35) Zinc 35.4 5.5 0.0004 22.5 0.7 10 14-24 5-14 (28)
2 d1nyra1 c.51.1.1 (A:533-645) T 19.7 12 0.00088 26.7 0.3 8 39-46 2-9 (113)
3 d1dx5i1 g.3.11.1 (I:345-387) T 19.1 14 0.001 22.9 0.5 9 15-23 9-17 (43)
4 d1uhaa1 g.3.1.1 (A:1-42) Lecti 9.8 40 0.0029 20.6 0.7 8 13-20 35-42 (42)
5 d1ggla_ b.60.1.2 (A:) Cellular 8.9 31 0.0023 25.3 -0.2 20 37-56 1-20 (134)
6 d2fsja2 c.55.1.12 (A:1-164) Hy 7.7 53 0.0038 24.1 0.7 28 37-64 131-161 (164)
7 d1wila_ g.50.1.3 (A:) Hypothet 6.4 74 0.0054 22.3 0.9 10 9-19 65-74 (89)
8 d1ulka2 g.3.1.1 (A:43-83) Lect 6.4 74 0.0054 19.2 0.8 9 12-20 33-41 (41)
9 d1jb0j_ f.23.18.1 (J:) Subunit 6.2 1.4E+02 0.01 17.9 2.0 16 219-234 19-34 (41)
10 d2a2ua_ b.60.1.1 (A:) Major ur 5.6 79 0.0058 22.2 0.7 18 31-48 6-23 (158)
No 1
>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.42 E-value=5.5 Score=22.54 Aligned_cols=10 Identities=40% Similarity=1.371 Sum_probs=7.8
Q ss_pred CCCCCcccchH
Q 023882 14 CLSDCRYNCMV 24 (276)
Q Consensus 14 C~~~C~Y~Cm~ 24 (276)
|+ ||.|.|.-
T Consensus 5 c~-ecsyscss 14 (28)
T d1x5wa1 5 CS-ECSYSCSS 14 (28)
T ss_dssp CS-SSSCEESS
T ss_pred Cc-ccccccCc
Confidence 54 89999963
No 2
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=19.67 E-value=12 Score=26.72 Aligned_cols=8 Identities=25% Similarity=0.630 Sum_probs=6.8
Q ss_pred ccccccCc
Q 023882 39 KYHGKWPF 46 (276)
Q Consensus 39 QFhGKWPF 46 (276)
.|.||||+
T Consensus 2 ~~~G~~P~ 9 (113)
T d1nyra1 2 ETKGAFPT 9 (113)
T ss_dssp HHTTCCCT
T ss_pred CCCCCCCc
Confidence 58899996
No 3
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.12 E-value=14 Score=22.95 Aligned_cols=9 Identities=33% Similarity=1.183 Sum_probs=7.3
Q ss_pred CCCCcccch
Q 023882 15 LSDCRYNCM 23 (276)
Q Consensus 15 ~~~C~Y~Cm 23 (276)
.++|.||||
T Consensus 9 ~~~CE~qCq 17 (43)
T d1dx5i1 9 RANCEYQCQ 17 (43)
T ss_dssp GCCCSSEEE
T ss_pred CCCcceeee
Confidence 358999997
No 4
>d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=9.79 E-value=40 Score=20.58 Aligned_cols=8 Identities=50% Similarity=1.335 Sum_probs=6.0
Q ss_pred CCCCCCcc
Q 023882 13 DCLSDCRY 20 (276)
Q Consensus 13 ~C~~~C~Y 20 (276)
.|.++|+|
T Consensus 35 GCqsnC~y 42 (42)
T d1uhaa1 35 GCQSQCDY 42 (42)
T ss_dssp TCCBCTTT
T ss_pred cccccCCc
Confidence 47788887
No 5
>d1ggla_ b.60.1.2 (A:) Cellular retinol-binding protein III {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.90 E-value=31 Score=25.35 Aligned_cols=20 Identities=15% Similarity=0.389 Sum_probs=14.1
Q ss_pred CcccccccCccccccccchH
Q 023882 37 PVKYHGKWPFIRVYGIQEPA 56 (276)
Q Consensus 37 v~QFhGKWPF~Rv~GiQEp~ 56 (276)
|+||-|||-+.+-=..-|++
T Consensus 1 p~~f~Gtwkl~~sENfd~fL 20 (134)
T d1ggla_ 1 PPNLTGYYRFVSQKNMEDYL 20 (134)
T ss_dssp CCSCCEEEEEEEEECHHHHH
T ss_pred CCCcCEEEEEEeccCHHHHH
Confidence 68999999998854444433
No 6
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=7.74 E-value=53 Score=24.13 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=22.5
Q ss_pred Cccccccc---CccccccccchHHHHHHHhH
Q 023882 37 PVKYHGKW---PFIRVYGIQEPASVAFSVLN 64 (276)
Q Consensus 37 v~QFhGKW---PF~Rv~GiQEp~SvlFSllN 64 (276)
..++.|+- -+.++.-++||++++++++|
T Consensus 131 ~~~~~g~~~~i~I~~v~V~pQg~ga~~~~l~ 161 (164)
T d2fsja2 131 VTGPEGEVRQFNITRLIMRPQGVGAALYLLN 161 (164)
T ss_dssp EECGGGCEEEEEEEEEEEEETTHHHHHHHHH
T ss_pred EEeeCCeEEEEEEeEEEEecCCHHHHHHHHH
Confidence 44566775 56788999999999999887
No 7
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.45 E-value=74 Score=22.32 Aligned_cols=10 Identities=30% Similarity=0.913 Sum_probs=7.3
Q ss_pred hccCCCCCCCc
Q 023882 9 WKKWDCLSDCR 19 (276)
Q Consensus 9 l~~W~C~~~C~ 19 (276)
-.||+|. +|+
T Consensus 65 ~~GWSC~-~C~ 74 (89)
T d1wila_ 65 ETGWSCH-YCD 74 (89)
T ss_dssp SSSCCCT-TTC
T ss_pred CCCcchh-hhc
Confidence 3689997 565
No 8
>d1ulka2 g.3.1.1 (A:43-83) Lectin-C {American pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=6.44 E-value=74 Score=19.24 Aligned_cols=9 Identities=44% Similarity=1.033 Sum_probs=6.5
Q ss_pred CCCCCCCcc
Q 023882 12 WDCLSDCRY 20 (276)
Q Consensus 12 W~C~~~C~Y 20 (276)
-.|.++|+|
T Consensus 33 ~gCqs~C~y 41 (41)
T d1ulka2 33 EGCQSQCSY 41 (41)
T ss_dssp TTCCBCTTT
T ss_pred cccccCCCC
Confidence 357788877
No 9
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=6.23 E-value=1.4e+02 Score=17.93 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhhcCCC
Q 023882 219 FGGALAMLLEIYDFPP 234 (276)
Q Consensus 219 v~~~~a~~LEl~DFpP 234 (276)
++...+.+.|++-|.|
T Consensus 19 ~~~tAG~lIEiNRFfP 34 (41)
T d1jb0j_ 19 MTITAGILIEFNRFYP 34 (41)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhCc
Confidence 3456789999999988
No 10
>d2a2ua_ b.60.1.1 (A:) Major urinary protein/alpha-2u-globulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.57 E-value=79 Score=22.19 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=14.0
Q ss_pred HhcCCCCcccccccCccc
Q 023882 31 DALGHGPVKYHGKWPFIR 48 (276)
Q Consensus 31 ~~~g~~v~QFhGKWPF~R 48 (276)
.+++..+.||-|||=-.-
T Consensus 6 ~~~nfdl~k~~G~Wy~ia 23 (158)
T d2a2ua_ 6 TRGNLDVAKLNGDWFSIV 23 (158)
T ss_dssp TTTCCCGGGGCEECEEEE
T ss_pred ccccCChHHcCEEeEEEE
Confidence 456788899999997653
Done!