Query 023883
Match_columns 276
No_of_seqs 132 out of 275
Neff 2.3
Searched_HMMs 46136
Date Fri Mar 29 07:20:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03634 TCP: TCP family trans 100.0 6.1E-35 1.3E-39 235.2 7.1 68 32-99 2-73 (138)
2 PLN03105 TCP24 transcription f 99.9 1.4E-26 3E-31 212.0 6.9 64 30-93 46-113 (324)
3 PLN03106 TCP2 Protein TCP2; Pr 99.9 1.7E-26 3.7E-31 218.9 7.1 63 30-92 70-136 (447)
4 KOG2299 Ribonuclease HI [Repli 44.8 8.8 0.00019 37.0 0.5 65 9-83 160-230 (301)
5 PRK02967 nickel responsive reg 42.3 36 0.00077 28.9 3.8 34 48-81 6-39 (139)
6 PF10200 Ndufs5: NADH:ubiquino 39.6 15 0.00032 30.1 1.0 21 58-82 3-23 (96)
7 cd07977 TFIIE_beta_winged_heli 37.4 17 0.00037 27.9 1.0 32 57-88 27-62 (75)
8 PF13986 DUF4224: Domain of un 32.6 34 0.00074 24.2 1.8 24 60-83 7-30 (47)
9 PHA02570 dexA exonuclease; Pro 30.7 34 0.00074 31.6 2.0 31 59-89 49-80 (220)
10 PF01402 RHH_1: Ribbon-helix-h 29.2 73 0.0016 20.3 2.8 31 48-79 4-34 (39)
11 TIGR02793 nikR nickel-responsi 27.7 85 0.0018 26.3 3.7 34 48-81 5-38 (129)
12 PRK05097 Ter macrodomain organ 27.0 77 0.0017 28.2 3.4 51 35-86 78-131 (150)
13 PF06303 MatP: Organiser of ma 26.5 60 0.0013 28.7 2.7 52 34-86 77-131 (148)
14 PRK04460 nickel responsive reg 25.6 92 0.002 26.4 3.6 34 48-81 7-40 (137)
15 PF12045 DUF3528: Protein of u 23.8 25 0.00053 31.0 -0.2 18 224-242 101-118 (143)
16 COG3120 Uncharacterized protei 23.2 89 0.0019 27.7 3.1 53 35-88 78-133 (149)
17 PF08262 Lem_TRP: Leucophaea m 21.7 43 0.00094 18.0 0.6 8 185-192 2-9 (10)
No 1
>PF03634 TCP: TCP family transcription factor; InterPro: IPR005333 The TCP transcription factor family was named after: teosinte branched 1 (tb1, Zea mays (Maize)) [], cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) [] and PCF in rice (Oryza sativa) [, ]. The TCP proteins code for structurally related proteins implicated in the evolution of key morphological traits []. However, the biochemical function of CYC and TB1 proteins remains to be demonstrated. One of the conserved regions is predicted to form a non-canonical basic-Helix-Loop-Helix (bHLP) structure. This domain is also found in two rice DNA-binding proteins, PCF1 and PCF2, where it has been shown to be involved in DNA-binding and dimerization. This family of transcription factors are exclusive to higher plants. They can be divided into two groups, TCP-C and TCP-P, that appear to have separated following an early gene duplication event []. This duplication event may have led to functional divergence and it has been proposed that that the TCP-P subfamily are transcriptional repressors, while the TPC-C subfamily are transcription activators [].
Probab=100.00 E-value=6.1e-35 Score=235.16 Aligned_cols=68 Identities=31% Similarity=0.547 Sum_probs=63.4
Q ss_pred CCCCCCccccC----CCCceeecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhchHHHHhhhcCCCCCcchh
Q 023883 32 SSNKDRHKKVD----GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASML 99 (276)
Q Consensus 32 s~~KDRHSKV~----~RDRRVRLs~~~A~rfF~LQd~LGfdk~skTIeWLL~qak~AI~~atgtgt~pas~~ 99 (276)
+.+|||||||| +||||||||++||++||+||||||||||||||||||++||+||++++...+.|.+.+
T Consensus 2 ~~~kdrhski~Ta~g~RdRRvRLs~~~Ar~FFdLQDmLGfDKaSKTveWLL~kSk~AIkeL~~~~~~~~s~~ 73 (138)
T PF03634_consen 2 AGKKDRHSKIHTAQGPRDRRVRLSLEIARKFFDLQDMLGFDKASKTVEWLLTKSKKAIKELTQSSSSSSSEC 73 (138)
T ss_pred CCCCCCCCccccccCCCCCceecCHHHHHHHHHHHHHhcCCCCCchHHHHHHhCHHHHHHHHHhhccccccc
Confidence 57899999999 899999999999999999999999999999999999999999999999876666554
No 2
>PLN03105 TCP24 transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional
Probab=99.93 E-value=1.4e-26 Score=212.00 Aligned_cols=64 Identities=34% Similarity=0.537 Sum_probs=60.0
Q ss_pred CCCCCCCCccccC----CCCceeecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhchHHHHhhhcCCC
Q 023883 30 KRSSNKDRHKKVD----GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGT 93 (276)
Q Consensus 30 krs~~KDRHSKV~----~RDRRVRLs~~~A~rfF~LQd~LGfdk~skTIeWLL~qak~AI~~atgtgt 93 (276)
++.++|||||||+ +||||||||++||++||+||||||||||||||||||++||+||++++...+
T Consensus 46 Ra~g~KDRHSKI~TAqGpRDRRvRLSv~iArkFFdLQDmLGFDKaSKTVEWLL~kSk~AI~ELp~l~~ 113 (324)
T PLN03105 46 RASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPLLNT 113 (324)
T ss_pred ccCCCCCcccceecccCCcccceecCHHHHHHHhhHHHHhCCCCcchHHHHHHHHhHHHHHhcccCcc
Confidence 4567999999999 899999999999999999999999999999999999999999999887553
No 3
>PLN03106 TCP2 Protein TCP2; Provisional
Probab=99.93 E-value=1.7e-26 Score=218.88 Aligned_cols=63 Identities=33% Similarity=0.555 Sum_probs=59.8
Q ss_pred CCCCCCCCccccC----CCCceeecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhchHHHHhhhcCC
Q 023883 30 KRSSNKDRHKKVD----GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTG 92 (276)
Q Consensus 30 krs~~KDRHSKV~----~RDRRVRLs~~~A~rfF~LQd~LGfdk~skTIeWLL~qak~AI~~atgtg 92 (276)
+++++|||||||+ +||||||||++||++||+||||||||||||||||||++||+||++++...
T Consensus 70 Rasg~KDRHSKI~Ta~G~RDRRvRLS~~~ArkFFdLQD~LGfDkaSKTvEWLL~~Sk~AI~EL~~l~ 136 (447)
T PLN03106 70 RASGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSLN 136 (447)
T ss_pred cccCCCCcccceecccCCcccceeccHHHHHHHHhHHHHhCCCCcchHHHHHHHHhHHHHHHhhccc
Confidence 4678999999999 89999999999999999999999999999999999999999999988754
No 4
>KOG2299 consensus Ribonuclease HI [Replication, recombination and repair]
Probab=44.80 E-value=8.8 Score=36.97 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=38.2
Q ss_pred CCCCeeeEeccccccccccCCCCCCCCCCccccC---CCCceee-cCHHHHHHHHhhhhh--hCCCCCchHHHHHHHhch
Q 023883 9 EIKDFQIMIANKDDSTKKLAPKRSSNKDRHKKVD---GRGRRIR-MPALCAARIFQLTRE--LGHKSDGETIQWLLQQAE 82 (276)
Q Consensus 9 ei~~~qiV~a~~~~~~~~l~~krs~~KDRHSKV~---~RDRRVR-Ls~~~A~rfF~LQd~--LGfdk~skTIeWLL~qak 82 (276)
..|++.++|+++.+..=.+..-.+ |+ .|||++| +.+.++ +-+.... -||-.|-+|+.||-.+.+
T Consensus 160 ~FP~~k~tV~kKADSlfpiVS~AS--------I~AKVtRD~alk~w~~~E~--~~~~d~~~GSGYP~DP~T~~wLk~~v~ 229 (301)
T KOG2299|consen 160 RFPGIKFTVTKKADSLFPIVSAAS--------IVAKVTRDRALKEWQFEEK--LSDPDEDLGSGYPSDPETKAWLKENVD 229 (301)
T ss_pred hCCCeEEEEeecccccccchhhhh--------hhhhhhhccccceeeeeee--cccCCccccCCCCCChhHHHHHHhccc
Confidence 457888888887655332221111 11 4666655 233344 2233333 478999999999998875
Q ss_pred H
Q 023883 83 P 83 (276)
Q Consensus 83 ~ 83 (276)
+
T Consensus 230 ~ 230 (301)
T KOG2299|consen 230 S 230 (301)
T ss_pred c
Confidence 4
No 5
>PRK02967 nickel responsive regulator; Provisional
Probab=42.32 E-value=36 Score=28.94 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=32.1
Q ss_pred eecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhc
Q 023883 48 IRMPALCAARIFQLTRELGHKSDGETIQWLLQQA 81 (276)
Q Consensus 48 VRLs~~~A~rfF~LQd~LGfdk~skTIeWLL~qa 81 (276)
|+||-+...+|=.+..+.||.+-||.|..|++..
T Consensus 6 vslp~~ll~~lD~~~~~~gy~sRSeaIrd~iR~~ 39 (139)
T PRK02967 6 ITLDDDLLETLDSLIARRGYQNRSEAIRDLLRAA 39 (139)
T ss_pred EEcCHHHHHHHHHHHHHcCCCCHhHHHHHHHHHH
Confidence 7899999999999999999999999999999865
No 6
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=39.65 E-value=15 Score=30.15 Aligned_cols=21 Identities=33% Similarity=0.749 Sum_probs=17.7
Q ss_pred HHhhhhhhCCCCCchHHHHHHHhch
Q 023883 58 IFQLTRELGHKSDGETIQWLLQQAE 82 (276)
Q Consensus 58 fF~LQd~LGfdk~skTIeWLL~qak 82 (276)
|||||.+||++-| .||+-+|-
T Consensus 3 ~~~~~~~~~~~~d----~~~~~~s~ 23 (96)
T PF10200_consen 3 FLDLQKRLGINLD----RWMLIQSA 23 (96)
T ss_pred hhhHHHHhCcCHH----HHHHHhcc
Confidence 8999999999865 69888774
No 7
>cd07977 TFIIE_beta_winged_helix TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity. Transcription Factor IIE (TFIIE) beta winged-helix (or forkhead) domain is located at the central core region of TFIIE beta. The winged-helix is a form of helix-turn-helix (HTH) domain which typically binds DNA with the 3rd helix. The winged-helix domain is distinguished by the presence of a C-terminal beta-strand hairpin unit (the wing) that packs against the cleft of the tri-helical core. Although most winged-helix domains are multi-member families, TFIIE beta winged-helix domain is typically found as a single orthologous group. TFIIE is one of the six eukaryotic general transcription factors (TFIIA, TFIIB, TFIID, TFIIE, TFIIF and TFIIH) that are required for transcription initiation of protein-coding genes. TFIIE is a heterotetramer consisting of two copies each of alpha and beta subunits. TFIIE beta contains several functional
Probab=37.42 E-value=17 Score=27.85 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=25.8
Q ss_pred HHHhhhhhhC-CCCCchHHHHHHHhchH---HHHhh
Q 023883 57 RIFQLTRELG-HKSDGETIQWLLQQAEP---SIIAA 88 (276)
Q Consensus 57 rfF~LQd~LG-fdk~skTIeWLL~qak~---AI~~a 88 (276)
.|=++.++|. +|...+.++||.+.++. -|+..
T Consensus 27 t~~EIl~~ls~~d~~~~~~~~L~~~~~~~n~~~~~~ 62 (75)
T cd07977 27 TLDEILDYLSLLDIGPKLKEWLKSEALVNNPKIDPK 62 (75)
T ss_pred cHHHHHHHHhccCccHHHHHHHHhhhhccCceeccC
Confidence 3557899999 99999999999988876 55443
No 8
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=32.61 E-value=34 Score=24.24 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=20.2
Q ss_pred hhhhhhCCCCCchHHHHHHHhchH
Q 023883 60 QLTRELGHKSDGETIQWLLQQAEP 83 (276)
Q Consensus 60 ~LQd~LGfdk~skTIeWLL~qak~ 83 (276)
+|++.-|++.+++-++||-.+-=+
T Consensus 7 El~elTG~k~~~~Q~~~L~~~Gi~ 30 (47)
T PF13986_consen 7 ELQELTGYKRPSKQIRWLRRNGIP 30 (47)
T ss_pred HHHHHHCCCCHHHHHHHHHHCCCe
Confidence 578888999999999999887433
No 9
>PHA02570 dexA exonuclease; Provisional
Probab=30.69 E-value=34 Score=31.61 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=23.5
Q ss_pred HhhhhhhC-CCCCchHHHHHHHhchHHHHhhh
Q 023883 59 FQLTRELG-HKSDGETIQWLLQQAEPSIIAAT 89 (276)
Q Consensus 59 F~LQd~LG-fdk~skTIeWLL~qak~AI~~at 89 (276)
|++....| ...+..||+|-++|+..|=.++.
T Consensus 49 ~d~~sq~g~~~~d~~TI~WW~kQS~EAR~~L~ 80 (220)
T PHA02570 49 FDLKSQKGKRLFDKSTIEWWKNQSPEARKNLK 80 (220)
T ss_pred cchhhccCCCccCchHHHHHHhCCHHHHHhcc
Confidence 33444467 78899999999999998866553
No 10
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=29.16 E-value=73 Score=20.32 Aligned_cols=31 Identities=35% Similarity=0.539 Sum_probs=25.1
Q ss_pred eecCHHHHHHHHhhhhhhCCCCCchHHHHHHH
Q 023883 48 IRMPALCAARIFQLTRELGHKSDGETIQWLLQ 79 (276)
Q Consensus 48 VRLs~~~A~rfF~LQd~LGfdk~skTIeWLL~ 79 (276)
||||.+...+|=.+..++| .+-|+-|.-++.
T Consensus 4 i~l~~~~~~~l~~~a~~~g-~s~s~~ir~ai~ 34 (39)
T PF01402_consen 4 IRLPDELYERLDELAKELG-RSRSELIREAIR 34 (39)
T ss_dssp EEEEHHHHHHHHHHHHHHT-SSHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 7999999999999999999 666665555544
No 11
>TIGR02793 nikR nickel-responsive transcriptional regulator NikR. Three members of the seed for this model, from Escherichia coli, Pseudomonas putida, and Brucella melitensis, are found associated with a nickel ABC transporter operon that acts to import nickel for use as a cofactor in urease or hydrogenase. These proteins, with characterized nickel-binding and DNA-binding domains, act as nickel-responsive transcriptional regulators. In the larger family of full-length homologs, most others both lack proximity to the nickel ABC transporter operon and form a separate clade. Several of the homologs not within the scope of this model, but rather scoring between the trusted and noise cutoffs, have been shown to bind nickel, copper, or both, and to regulate genes in response to nickel.
Probab=27.70 E-value=85 Score=26.34 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=31.5
Q ss_pred eecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhc
Q 023883 48 IRMPALCAARIFQLTRELGHKSDGETIQWLLQQA 81 (276)
Q Consensus 48 VRLs~~~A~rfF~LQd~LGfdk~skTIeWLL~qa 81 (276)
|+||.+.+.+|=.+..+.||..-||.|.=+++..
T Consensus 5 vslp~~ll~~lD~~~~~~g~~~RSe~ir~~ir~~ 38 (129)
T TIGR02793 5 ITLDDDLLETLDRLIARRGYQNRSEAIRDLLRSG 38 (129)
T ss_pred EEcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999999999888754
No 12
>PRK05097 Ter macrodomain organizer matS-binding protein; Provisional
Probab=26.97 E-value=77 Score=28.18 Aligned_cols=51 Identities=27% Similarity=0.324 Sum_probs=43.9
Q ss_pred CCCc---cccCCCCceeecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhchHHHH
Q 023883 35 KDRH---KKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSII 86 (276)
Q Consensus 35 KDRH---SKV~~RDRRVRLs~~~A~rfF~LQd~LGfdk~skTIeWLL~qak~AI~ 86 (276)
+-|| -++|.|-.-|-|.-.+=.|+-.+.+++| -+=|+||++|+..|+..-+
T Consensus 78 RKRhFNAE~qhTrKKSIDLey~vW~rLs~~a~~~~-~TLSetI~~li~eae~ke~ 131 (150)
T PRK05097 78 RKRHFNAEHQHTRKKSIDLEYRVWQRLAGLAQRRG-KTLSETIVQLIEDAERKEK 131 (150)
T ss_pred HHccCCcccccccccCccccHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHH
Confidence 4566 4677999999999999999999999999 7889999999998876544
No 13
>PF06303 MatP: Organiser of macrodomain of Terminus of chromosome; InterPro: IPR009390 Many bacteria have circular genomes that are large in comparison to their cellular dimensions; this imposes the necessity for compaction of the chromosome during cellular growth, replication, transcription, and segregation. Compaction of chromosomes results in the formation of structures called nucleoids. Nucleoids can be generated by a number of different processes: they include unrestrained DNA supercoiling, formation of a chromatin-like structure through the interaction of DNA binding proteins, condensation by structural maintenance of chromosomes (SMC)-like proteins, and macromolecular crowding []. Chromosome replication and segregation are intimately linked and tightly controlled to ensure that daughter cells each receive a complete copy of the genome. Chromosomes have replication origin (Ori) and termination (Ter) regions that are diametrically opposed. During the process of chromosome replication and cell division the Ori and Ter regions form two macrodomains (MDs), the Ori MD is centred on migS, a 25 bp sequence, that acts as the cis-acting site for the bipolar positioning of oriC []. The Ter MD is centred on dif (deletion-induced filamentation), which is a resolvase site that reduces chromosome multimers to monomers []. The Ori and Ter MDs are insulated from one and other by non-structural regions and other nucleoids. Chromosome replication initiates bidirectionally from oriC. Within the Ori MD with sister chromatids being located in separate cell halves and with the Ter macrodomain anchored to the cell pole. Cell division occurs with the completion of replication of the Ter region and the subsequent separation of the two sister chromatids [, ]. This entry contains MatP (YcbG), which is a component of the MatP/MatS site-specific system that organises the Ter macrodomain (MD) in Escherichia coli (strain K12) and related enterobacteria during replication of the chromosome. In E. coli there are 23 matS sequences, located in the Ter region which is centred on dif. The matS consensus is a palindromic sequence 5'-GTGAC[AG][CT]GTCAC, which is the recognition sequence for MatP. MatP binds to the matS sequences; and is critical for Ter MD formation. Inactivation of matP causes severe defects in chromosome segregation and cell division revealing its role as a major organiser of the Ter MD [].
Probab=26.46 E-value=60 Score=28.75 Aligned_cols=52 Identities=25% Similarity=0.361 Sum_probs=43.9
Q ss_pred CCCCc---cccCCCCceeecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhchHHHH
Q 023883 34 NKDRH---KKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSII 86 (276)
Q Consensus 34 ~KDRH---SKV~~RDRRVRLs~~~A~rfF~LQd~LGfdk~skTIeWLL~qak~AI~ 86 (276)
+|+|| -++|.|-+-|=|.-.+=.++=.|..+.| -+=|+||+.||..++.--+
T Consensus 77 rRkR~fnae~~~t~kKSIDLey~vW~rLS~lA~~~g-~TLSEtI~~li~e~e~k~~ 131 (148)
T PF06303_consen 77 RRKRHFNAEHQHTRKKSIDLEYRVWQRLSALAQRRG-MTLSETIEYLIEEAERKEK 131 (148)
T ss_pred HHHhhccccccCCCcceeeecHHHHHHHHHHHHHcC-CcHHHHHHHHHHhHHHHHH
Confidence 35666 4567899999999999999999999999 6889999999998876543
No 14
>PRK04460 nickel responsive regulator; Provisional
Probab=25.59 E-value=92 Score=26.43 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=31.5
Q ss_pred eecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhc
Q 023883 48 IRMPALCAARIFQLTRELGHKSDGETIQWLLQQA 81 (276)
Q Consensus 48 VRLs~~~A~rfF~LQd~LGfdk~skTIeWLL~qa 81 (276)
|+||-+.+.+|=.+.++.||.+-||+|.-+++..
T Consensus 7 vslp~~ll~~lD~~~~~~gy~sRSe~ird~ir~~ 40 (137)
T PRK04460 7 VSLDSDLLEKFDELIEEKGYQNRSEAIRDLIRDF 40 (137)
T ss_pred EEeCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999999999888754
No 15
>PF12045 DUF3528: Protein of unknown function (DUF3528); InterPro: IPR021918 This domain of unknown function is found at the N terminus of some Homeobox proteins belonging to the ABD-B family. It is found in association with PF00046 from PFAM.
Probab=23.84 E-value=25 Score=31.00 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=15.2
Q ss_pred cCcceeeechhhHHHHHHH
Q 023883 224 QDAHVGVMNSQAISQFYQQ 242 (276)
Q Consensus 224 Qdgh~gvln~qa~~q~yqQ 242 (276)
--|+-||| ||+|.|||.-
T Consensus 101 ~VGRNgVL-PQ~FDQFfet 118 (143)
T PF12045_consen 101 NVGRNGVL-PQGFDQFFET 118 (143)
T ss_pred ccccCCcC-ccccchhccc
Confidence 35678898 8999999987
No 16
>COG3120 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.17 E-value=89 Score=27.66 Aligned_cols=53 Identities=30% Similarity=0.384 Sum_probs=44.0
Q ss_pred CCCc---cccCCCCceeecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhchHHHHhh
Q 023883 35 KDRH---KKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAA 88 (276)
Q Consensus 35 KDRH---SKV~~RDRRVRLs~~~A~rfF~LQd~LGfdk~skTIeWLL~qak~AI~~a 88 (276)
+.|| -++|.|-..|-|--.+=-|+--+.+++| .+=|+||.+|+..++..-+.+
T Consensus 78 RKRhFNaE~qhTrKKSIDLey~VW~rLs~~a~~~g-~TLSetI~~li~eae~keky~ 133 (149)
T COG3120 78 RKRHFNAEHQHTRKKSIDLEYAVWQRLSGLARRRG-KTLSETIVYLIEEAERKEKYA 133 (149)
T ss_pred HHhhccHhhhhhhhccccHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHH
Confidence 4456 3567899999998889999999999999 889999999999887765543
No 17
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=21.72 E-value=43 Score=18.04 Aligned_cols=8 Identities=63% Similarity=1.580 Sum_probs=5.6
Q ss_pred CCcCcCcc
Q 023883 185 PKFGFHGI 192 (276)
Q Consensus 185 ~k~gf~G~ 192 (276)
+.+||+|+
T Consensus 2 psmgf~g~ 9 (10)
T PF08262_consen 2 PSMGFHGM 9 (10)
T ss_pred Cccccccc
Confidence 45788876
Done!