Query 023883
Match_columns 276
No_of_seqs 132 out of 275
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 14:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ay0_A Bifunctional PUTA prote 28.9 43 0.0015 23.2 2.9 35 47-86 7-41 (58)
2 2knz_A Ubiquilin-4; cytoplasm, 26.8 30 0.001 23.5 1.8 13 54-67 11-23 (53)
3 1vg5_A RSGI RUH-014, rhomboid 25.7 16 0.00055 27.1 0.2 20 49-69 24-43 (73)
4 3t5v_A Nuclear mRNA export pro 25.5 23 0.00079 31.9 1.3 20 60-79 229-248 (316)
5 3iot_A Maltose-binding protein 25.4 24 0.00083 30.8 1.4 8 72-79 190-197 (449)
6 4exb_A Putative uncharacterize 23.8 19 0.00065 31.1 0.4 21 186-206 34-54 (292)
7 3b3e_A YVGN protein; aldo-keto 21.9 23 0.00079 31.0 0.5 18 186-204 44-61 (310)
8 3b3d_A YTBE protein, putative 19.8 27 0.00093 30.3 0.5 15 190-204 47-61 (314)
9 1ify_A HHR23A, UV excision rep 19.2 88 0.003 20.9 2.9 16 53-69 7-22 (49)
10 2gpe_A Bifunctional protein PU 19.0 82 0.0028 20.3 2.6 33 47-84 7-39 (52)
No 1
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=28.86 E-value=43 Score=23.15 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=28.1
Q ss_pred eeecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhchHHHH
Q 023883 47 RIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSII 86 (276)
Q Consensus 47 RVRLs~~~A~rfF~LQd~LGfdk~skTIeWLL~qak~AI~ 86 (276)
-||||.+...++=.|.+.+| .+.-||+++|=.+..
T Consensus 7 svrL~~el~~rL~~lA~~~~-----rs~s~lireAi~~yl 41 (58)
T 2ay0_A 7 GVMLDDATRERIKSAATRID-----RTPHWLIKQAIFSYL 41 (58)
T ss_dssp EEEECHHHHHHHHHHHHHTT-----CCHHHHHHHHHHHHH
T ss_pred EeECCHHHHHHHHHHHHHHC-----cCHHHHHHHHHHHHH
Confidence 48999999999999999988 567799877644433
No 2
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=26.84 E-value=30 Score=23.54 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=8.5
Q ss_pred HHHHHHhhhhhhCC
Q 023883 54 CAARIFQLTRELGH 67 (276)
Q Consensus 54 ~A~rfF~LQd~LGf 67 (276)
+..++-+|.+| ||
T Consensus 11 ~~~~l~~L~~M-GF 23 (53)
T 2knz_A 11 FQQQLEQLNSM-GF 23 (53)
T ss_dssp HHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHc-CC
Confidence 45566677765 88
No 3
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=25.68 E-value=16 Score=27.09 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=12.2
Q ss_pred ecCHHHHHHHHhhhhhhCCCC
Q 023883 49 RMPALCAARIFQLTRELGHKS 69 (276)
Q Consensus 49 RLs~~~A~rfF~LQd~LGfdk 69 (276)
+....+-..+-+|.+| ||+.
T Consensus 24 ~~~~~~ee~I~~L~eM-GF~r 43 (73)
T 1vg5_A 24 GRVAASEEQIQKLVAM-GFDR 43 (73)
T ss_dssp CCSCCCHHHHHHHHTT-TCCH
T ss_pred cCCcccHHHHHHHHHc-CCCH
Confidence 4444555666777765 7764
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=25.48 E-value=23 Score=31.93 Aligned_cols=20 Identities=20% Similarity=0.110 Sum_probs=17.9
Q ss_pred hhhhhhCCCCCchHHHHHHH
Q 023883 60 QLTRELGHKSDGETIQWLLQ 79 (276)
Q Consensus 60 ~LQd~LGfdk~skTIeWLL~ 79 (276)
.|+++|+||++.++++|+-.
T Consensus 229 ~L~~~L~Fds~ee~~~F~~~ 248 (316)
T 3t5v_A 229 YLENMLLFNNRQEIIEFCNY 248 (316)
T ss_dssp HHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHH
Confidence 58999999999999999943
No 5
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=25.44 E-value=24 Score=30.82 Aligned_cols=8 Identities=13% Similarity=0.501 Sum_probs=3.4
Q ss_pred hHHHHHHH
Q 023883 72 ETIQWLLQ 79 (276)
Q Consensus 72 kTIeWLL~ 79 (276)
++++||.+
T Consensus 190 ~al~~~~~ 197 (449)
T 3iot_A 190 AGLTFLVD 197 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 6
>4exb_A Putative uncharacterized protein; aldo-keto reductase, NADP+ binding, oxidoreducta; 2.75A {Pseudomonas aeruginosa} PDB: 4exa_A
Probab=23.85 E-value=19 Score=31.07 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=17.1
Q ss_pred CcCcCccccCCCCccccchhh
Q 023883 186 KFGFHGIEFPNMNMGLMSFSS 206 (276)
Q Consensus 186 k~gf~G~~~p~~~~g~m~f~s 206 (276)
++|=.|+.+|.+|+|.|.|..
T Consensus 34 ~Lg~tg~~vs~lglGt~~~g~ 54 (292)
T 4exb_A 34 PLGDTGLAVSPLGLGTVKFGR 54 (292)
T ss_dssp ECTTSSCEECSEEEECSTTTC
T ss_pred ecCCCCCccCCEeEcccccCC
Confidence 567679999999999887753
No 7
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus subtilis} PDB: 3b3d_A
Probab=21.93 E-value=23 Score=31.02 Aligned_cols=18 Identities=28% Similarity=0.721 Sum_probs=14.5
Q ss_pred CcCcCccccCCCCccccch
Q 023883 186 KFGFHGIEFPNMNMGLMSF 204 (276)
Q Consensus 186 k~gf~G~~~p~~~~g~m~f 204 (276)
+++ .|+++|.+|+|.|.+
T Consensus 44 ~L~-~g~~v~~lglGt~~~ 61 (310)
T 3b3e_A 44 KLH-NGVEMPWFGLGVFKV 61 (310)
T ss_dssp ECT-TSCEEESBCEECTTC
T ss_pred ECC-CCCeeCceeeeCCcC
Confidence 345 699999999998765
No 8
>3b3d_A YTBE protein, putative morphine dehydrogenase; aldo-keto reductase, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=19.83 E-value=27 Score=30.30 Aligned_cols=15 Identities=27% Similarity=0.782 Sum_probs=12.4
Q ss_pred CccccCCCCccccch
Q 023883 190 HGIEFPNMNMGLMSF 204 (276)
Q Consensus 190 ~G~~~p~~~~g~m~f 204 (276)
+|+++|.+|||.|.+
T Consensus 47 ~G~~ip~lGlGt~~~ 61 (314)
T 3b3d_A 47 NGVEMPWFGLGVFQV 61 (314)
T ss_dssp TSCEEESBCEECCSC
T ss_pred CcCcccceeEECCCC
Confidence 399999999997654
No 9
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=19.21 E-value=88 Score=20.87 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=9.4
Q ss_pred HHHHHHHhhhhhhCCCC
Q 023883 53 LCAARIFQLTRELGHKS 69 (276)
Q Consensus 53 ~~A~rfF~LQd~LGfdk 69 (276)
.+..++-+|.+| ||+.
T Consensus 7 ~~~~~i~~L~~M-GF~~ 22 (49)
T 1ify_A 7 EYETMLTEIMSM-GYER 22 (49)
T ss_dssp HHHHHHHHHHHT-TCCH
T ss_pred cCHHHHHHHHHc-CCCH
Confidence 344556667666 7753
No 10
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=19.00 E-value=82 Score=20.35 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=26.4
Q ss_pred eeecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhchHH
Q 023883 47 RIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPS 84 (276)
Q Consensus 47 RVRLs~~~A~rfF~LQd~LGfdk~skTIeWLL~qak~A 84 (276)
-||||.+...++=.|....| .+..||+++|=..
T Consensus 7 sirl~~~l~~~l~~lA~~~~-----rs~s~lir~Ai~~ 39 (52)
T 2gpe_A 7 GVKLDDATRERIKSAATRID-----RTPHWLIKQAIFS 39 (52)
T ss_dssp EEEEEHHHHHHHHHHHHHTT-----CCHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHHC-----cCHHHHHHHHHHH
Confidence 48999999999999999988 3567887765433
Done!