Query 023883
Match_columns 276
No_of_seqs 132 out of 275
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 14:23:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023883.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023883hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a1ia3 g.37.1.1 (A:160-187) Z 33.2 1 7.6E-05 27.6 -2.8 14 31-44 15-28 (28)
2 d2hzaa1 a.43.1.3 (A:1-48) Nick 20.2 46 0.0034 21.5 3.3 34 48-81 6-39 (48)
3 d1wgna_ a.5.2.1 (A:) Ubiquitin 18.9 15 0.0011 24.7 0.7 14 70-83 47-60 (63)
4 d1pz1a_ c.1.7.1 (A:) Putative 15.8 17 0.0012 28.7 0.3 23 186-208 5-27 (333)
5 d1wiva_ a.5.2.1 (A:) Ubiquitin 15.4 20 0.0015 24.5 0.7 14 70-83 57-70 (73)
6 d1oc2a_ c.2.1.2 (A:) dTDP-gluc 15.2 56 0.0041 25.3 3.3 22 61-82 296-325 (346)
7 d2bj7a1 a.43.1.3 (A:1-50) Nick 15.1 61 0.0044 21.1 3.0 34 48-81 8-41 (50)
8 d1qpza1 a.35.1.5 (A:2-58) Puri 14.7 59 0.0043 21.2 2.9 22 49-70 26-47 (57)
9 d2c5aa1 c.2.1.2 (A:13-375) GDP 14.4 39 0.0029 26.2 2.2 22 60-81 300-328 (363)
10 d2j5ya1 a.8.1.2 (A:1-53) PAB { 12.8 39 0.0028 22.8 1.5 19 75-93 4-23 (53)
No 1
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.22 E-value=1 Score=27.62 Aligned_cols=14 Identities=43% Similarity=0.698 Sum_probs=10.5
Q ss_pred CCCCCCCccccCCC
Q 023883 31 RSSNKDRHKKVDGR 44 (276)
Q Consensus 31 rs~~KDRHSKV~~R 44 (276)
|+-.+.||+|||.|
T Consensus 15 rsderkRH~kiH~k 28 (28)
T d1a1ia3 15 RSDERKRHTKIHLR 28 (28)
T ss_dssp SHHHHHHHHGGGCC
T ss_pred cchhhhhhhhhccC
Confidence 44557899999975
No 2
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.20 E-value=46 Score=21.50 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=31.3
Q ss_pred eecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhc
Q 023883 48 IRMPALCAARIFQLTRELGHKSDGETIQWLLQQA 81 (276)
Q Consensus 48 VRLs~~~A~rfF~LQd~LGfdk~skTIeWLL~qa 81 (276)
|.||-+...+|=.+..+.||..-||+|.=|++..
T Consensus 6 Vslp~~Ll~~lD~~v~~~gy~nRSEaIRdliR~~ 39 (48)
T d2hzaa1 6 ITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSA 39 (48)
T ss_dssp EEECHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 6799999999999999999999999999888754
No 3
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.87 E-value=15 Score=24.67 Aligned_cols=14 Identities=14% Similarity=0.458 Sum_probs=11.2
Q ss_pred CchHHHHHHHhchH
Q 023883 70 DGETIQWLLQQAEP 83 (276)
Q Consensus 70 ~skTIeWLL~qak~ 83 (276)
-..+|+|||.++.|
T Consensus 47 ~e~A~~~Lls~~~p 60 (63)
T d1wgna_ 47 IEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCCC
Confidence 56799999998755
No 4
>d1pz1a_ c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillus subtilis [TaxId: 1423]}
Probab=15.75 E-value=17 Score=28.70 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=18.8
Q ss_pred CcCcCccccCCCCccccchhhcc
Q 023883 186 KFGFHGIEFPNMNMGLMSFSSML 208 (276)
Q Consensus 186 k~gf~G~~~p~~~~g~m~f~s~~ 208 (276)
++|=.|+++|.+|+|.|+|....
T Consensus 5 ~lG~tgl~vs~iglGt~~~g~~~ 27 (333)
T d1pz1a_ 5 SIADTGIEASRIGLGTWAIGGTM 27 (333)
T ss_dssp ECTTSSCEEESEEEECTGGGCTT
T ss_pred ECCCCCCCccCeeEcCCccCCCC
Confidence 46667999999999999987554
No 5
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.43 E-value=20 Score=24.50 Aligned_cols=14 Identities=14% Similarity=0.591 Sum_probs=10.9
Q ss_pred CchHHHHHHHhchH
Q 023883 70 DGETIQWLLQQAEP 83 (276)
Q Consensus 70 ~skTIeWLL~qak~ 83 (276)
-..+|+|||.++.+
T Consensus 57 ~e~Av~~Lls~~~~ 70 (73)
T d1wiva_ 57 IEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHHHHSCCS
T ss_pred HHHHHHHHHcCCCC
Confidence 45789999988765
No 6
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}
Probab=15.17 E-value=56 Score=25.26 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=15.3
Q ss_pred hhhhhCCCCC-c-------hHHHHHHHhch
Q 023883 61 LTRELGHKSD-G-------ETIQWLLQQAE 82 (276)
Q Consensus 61 LQd~LGfdk~-s-------kTIeWLL~qak 82 (276)
++++|||+.- + +||+|.+++-.
T Consensus 296 ~~~~LGw~P~~t~l~e~i~~ti~w~~~n~~ 325 (346)
T d1oc2a_ 296 LRDELGWTPQFTDFSEGLEETIQWYTDNQD 325 (346)
T ss_dssp HHHHHCCCCSCCCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 3467888732 2 79999998654
No 7
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=15.10 E-value=61 Score=21.09 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=30.9
Q ss_pred eecCHHHHHHHHhhhhhhCCCCCchHHHHHHHhc
Q 023883 48 IRMPALCAARIFQLTRELGHKSDGETIQWLLQQA 81 (276)
Q Consensus 48 VRLs~~~A~rfF~LQd~LGfdk~skTIeWLL~qa 81 (276)
|.||-+...+|=.+..+.||..-||+|.=|++..
T Consensus 8 vslp~~Ll~~lD~~v~~~gy~nRSEaIRdliR~~ 41 (50)
T d2bj7a1 8 ISIPSKLLEKFDQIIEEIGYENRSEAIRDLIRDF 41 (50)
T ss_dssp EEEEHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 6788999999999999999999999999888754
No 8
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.71 E-value=59 Score=21.18 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=19.9
Q ss_pred ecCHHHHHHHHhhhhhhCCCCC
Q 023883 49 RMPALCAARIFQLTRELGHKSD 70 (276)
Q Consensus 49 RLs~~~A~rfF~LQd~LGfdk~ 70 (276)
+++.++..++.+.-++|||..+
T Consensus 26 ~vs~~tr~rV~~~a~~lgY~pn 47 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELHYSPS 47 (57)
T ss_dssp CCCHHHHHHHHHHHHHHTCCCC
T ss_pred ccCHHHHHHHHHHHHHHCCCCC
Confidence 5899999999999999999754
No 9
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=14.40 E-value=39 Score=26.21 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=15.7
Q ss_pred hhhhhhCCCCC-------chHHHHHHHhc
Q 023883 60 QLTRELGHKSD-------GETIQWLLQQA 81 (276)
Q Consensus 60 ~LQd~LGfdk~-------skTIeWLL~qa 81 (276)
-+.++|||+.- .+||+|++++-
T Consensus 300 ka~~~LGw~p~~sleegi~~ti~w~~~~~ 328 (363)
T d2c5aa1 300 LIKEKLGWAPNMRLKEGLRITYFWIKEQI 328 (363)
T ss_dssp HHHHHHSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34566898743 68999998763
No 10
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=12.77 E-value=39 Score=22.76 Aligned_cols=19 Identities=37% Similarity=0.683 Sum_probs=14.0
Q ss_pred HHHHHhchH-HHHhhhcCCC
Q 023883 75 QWLLQQAEP-SIIAATGTGT 93 (276)
Q Consensus 75 eWLL~qak~-AI~~atgtgt 93 (276)
+|||.+||. ||.++...|.
T Consensus 4 ~~~Lk~AKe~AI~eLK~~GI 23 (53)
T d2j5ya1 4 QWLLKNAKEDAIAELKKAGI 23 (53)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCc
Confidence 799999975 6667766554
Done!