Query 023884
Match_columns 276
No_of_seqs 224 out of 1123
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:24:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwd_A ADP-ribosylation factor 100.0 7.3E-45 2.5E-49 306.9 11.3 120 3-122 25-145 (147)
2 3sub_A ADP-ribosylation factor 100.0 5.7E-42 2E-46 293.2 11.8 127 2-129 7-134 (163)
3 2owa_A Arfgap-like finger doma 100.0 1.1E-41 3.8E-46 285.7 10.0 113 4-116 24-137 (138)
4 2crw_A ARF GAP 3, ADP-ribosyla 100.0 3.7E-41 1.3E-45 285.6 10.6 113 3-116 16-129 (149)
5 2p57_A GTPase-activating prote 100.0 9.3E-41 3.2E-45 281.4 10.2 114 3-117 24-138 (144)
6 2olm_A Nucleoporin-like protei 100.0 3.4E-37 1.2E-41 259.1 10.8 120 3-126 12-131 (140)
7 2iqj_A Stromal membrane-associ 100.0 4E-37 1.4E-41 256.9 9.4 114 4-123 15-128 (134)
8 2crr_A Stromal membrane-associ 100.0 5.3E-37 1.8E-41 258.2 9.6 116 3-124 16-131 (141)
9 3o47_A ADP-ribosylation factor 100.0 1.2E-34 4E-39 269.6 12.3 122 3-124 24-146 (329)
10 3jue_A Arfgap with coiled-coil 100.0 8.9E-32 3E-36 254.7 10.8 118 5-124 34-151 (368)
11 3lju_X ARF-GAP with dual PH do 100.0 2.5E-31 8.4E-36 254.2 10.7 118 3-124 21-138 (386)
12 2b0o_E UPLC1; arfgap, structur 100.0 7.8E-29 2.7E-33 226.4 11.7 119 3-123 29-147 (301)
13 1dcq_A PYK2-associated protein 100.0 4.2E-29 1.4E-33 225.4 9.6 119 3-123 4-122 (278)
14 3lvq_E ARF-GAP with SH3 domain 99.9 1.9E-28 6.6E-33 236.9 8.5 119 3-123 10-128 (497)
15 2vut_I AREA, nitrogen regulato 88.2 0.3 1E-05 32.7 2.5 35 17-51 2-37 (43)
16 1gnf_A Transcription factor GA 87.8 0.36 1.2E-05 32.8 2.7 38 15-52 3-41 (46)
17 3dfx_A Trans-acting T-cell-spe 85.7 0.42 1.4E-05 34.5 2.3 39 13-51 4-43 (63)
18 1u5k_A Hypothetical protein; O 85.5 0.48 1.6E-05 41.5 3.1 49 13-77 147-195 (244)
19 4gat_A Nitrogen regulatory pro 81.9 0.98 3.4E-05 32.8 2.9 39 14-52 7-46 (66)
20 2kae_A GATA-type transcription 74.7 0.58 2E-05 34.6 -0.1 43 14-61 6-51 (71)
21 4hc9_A Trans-acting T-cell-spe 73.1 1.7 5.8E-05 34.6 2.3 37 16-52 5-42 (115)
22 1ffk_W Ribosomal protein L37AE 70.2 2.9 0.0001 30.9 2.8 40 3-44 13-53 (73)
23 4hc9_A Trans-acting T-cell-spe 61.6 6.3 0.00022 31.3 3.4 39 14-52 57-96 (115)
24 3k7a_M Transcription initiatio 60.9 3.3 0.00011 38.3 1.9 46 1-46 1-52 (345)
25 3g9m_A Glucocorticoid receptor 55.8 6.2 0.00021 29.8 2.3 30 15-47 1-30 (90)
26 1x58_A Hypothetical protein 49 51.2 11 0.00036 27.1 2.8 27 62-89 9-39 (62)
27 3iz6_N 40S ribosomal protein S 51.0 8.9 0.00031 26.9 2.3 39 14-57 16-54 (56)
28 1hcq_A Protein (estrogen recep 50.0 9.2 0.00032 28.6 2.4 30 15-47 3-32 (84)
29 2a66_A Orphan nuclear receptor 49.5 7.2 0.00024 30.9 1.8 34 11-47 4-37 (113)
30 1vq8_Z 50S ribosomal protein L 49.0 5.4 0.00019 30.0 1.0 41 3-45 13-54 (83)
31 1d4u_A Nucleotide excision rep 48.9 4.4 0.00015 32.2 0.5 32 15-46 4-36 (111)
32 1tjl_A DNAK suppressor protein 48.5 6 0.0002 32.8 1.3 34 14-47 109-143 (151)
33 1r4i_A Androgen receptor; AR, 46.8 9.3 0.00032 29.8 2.1 31 14-47 5-35 (105)
34 2han_B Ecdysone receptor; tran 46.4 11 0.00038 30.0 2.5 30 15-47 7-36 (119)
35 3cc2_Z 50S ribosomal protein L 44.5 4.9 0.00017 32.3 0.1 40 3-44 46-86 (116)
36 2ebl_A COUP transcription fact 44.3 11 0.00036 28.6 2.0 31 14-47 5-35 (89)
37 2han_A Protein ultraspiracle; 43.7 12 0.0004 28.6 2.1 30 15-47 9-38 (93)
38 2kgo_A Uncharacterized protein 43.5 2.9 0.0001 33.1 -1.3 32 16-47 56-88 (108)
39 1dl6_A Transcription factor II 43.4 10 0.00034 26.4 1.6 28 17-45 12-39 (58)
40 2nll_B Protein (thyroid hormon 43.3 10 0.00035 29.4 1.8 28 17-47 2-29 (103)
41 1cit_A NGFI-B, protein (orphan 40.8 16 0.00055 27.6 2.5 27 18-47 2-28 (89)
42 1ynw_B Retinoic acid receptor 39.6 11 0.00036 29.2 1.4 29 16-47 3-31 (99)
43 1dsz_A RAR-alpha, retinoic aci 39.2 11 0.00038 28.2 1.4 28 17-47 5-32 (86)
44 1a6y_A Orphan nuclear receptor 39.1 14 0.00047 28.2 1.9 30 15-47 6-35 (94)
45 3j21_i 50S ribosomal protein L 39.0 13 0.00043 28.2 1.6 39 3-43 21-60 (83)
46 1lo1_A Steroid hormone recepto 38.0 9.6 0.00033 29.4 0.9 29 16-47 4-32 (98)
47 3izc_m 60S ribosomal protein R 37.1 17 0.00058 28.0 2.1 39 3-43 22-61 (92)
48 3dzy_D Peroxisome proliferator 35.3 18 0.0006 34.3 2.4 30 15-47 49-78 (419)
49 1kb2_A Vitamin D3 receptor; VD 35.2 15 0.00053 28.8 1.7 30 15-47 5-34 (110)
50 4bbr_M Transcription initiatio 32.4 20 0.00068 33.2 2.2 27 18-44 23-50 (345)
51 3iz5_m 60S ribosomal protein L 32.1 18 0.00061 27.9 1.5 38 4-43 23-61 (92)
52 3j21_g 50S ribosomal protein L 31.5 9.9 0.00034 26.2 -0.0 24 15-44 13-36 (51)
53 1dsz_B RXR-alpha, retinoic aci 29.2 15 0.00052 27.5 0.7 30 15-47 4-33 (85)
54 3jyw_9 60S ribosomal protein L 28.8 12 0.00041 27.6 0.0 38 4-43 13-51 (72)
55 3cbb_A HNF-4-alpha, hepatocyte 28.2 20 0.0007 26.3 1.2 27 18-47 2-28 (78)
56 4hn5_A Glucocorticoid receptor 27.0 31 0.0011 27.4 2.2 31 14-47 27-57 (117)
57 2uzg_A Ubiquitin carboxyl-term 26.8 24 0.0008 26.9 1.4 26 15-40 24-52 (97)
58 1ovx_A ATP-dependent CLP prote 24.3 40 0.0014 24.4 2.1 29 17-45 19-49 (67)
59 4a17_Y RPL37A, 60S ribosomal p 24.3 17 0.00057 28.6 0.1 40 3-44 22-62 (103)
60 3dzy_A Retinoic acid receptor 23.7 19 0.00065 34.6 0.4 30 15-47 136-165 (467)
61 2ds5_A CLPX, ATP-dependent CLP 23.5 52 0.0018 22.4 2.5 29 16-44 11-41 (51)
62 1pft_A TFIIB, PFTFIIBN; N-term 22.5 37 0.0013 22.2 1.6 28 16-44 5-32 (50)
63 3c5k_A HD6, histone deacetylas 22.1 55 0.0019 25.4 2.7 24 16-39 24-47 (109)
64 3fbi_A Mediator of RNA polymer 21.5 35 0.0012 25.7 1.4 11 241-251 73-83 (84)
65 3k1f_M Transcription initiatio 21.2 50 0.0017 28.5 2.5 28 18-45 23-51 (197)
66 3j20_P 30S ribosomal protein S 20.5 53 0.0018 22.9 2.0 29 14-44 16-44 (56)
No 1
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.3e-45 Score=306.91 Aligned_cols=120 Identities=48% Similarity=0.994 Sum_probs=108.0
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 023884 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (276)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~VrSvtmD~Ws~~el~~m~~gGN~~~n~ 82 (276)
++++|++|++.|+|++|+||++++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||+.|+.+||.++|+
T Consensus 25 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an~ 104 (147)
T 3dwd_A 25 TRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFRE 104 (147)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC-CCCCCChhhhccchHHHHHHHHHHHHHcCCCCCC
Q 023884 83 FLSQYG-IPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRD 122 (276)
Q Consensus 83 ~~e~~~-~~~~~~i~~KY~s~aa~~yr~kl~~~~egr~~~~ 122 (276)
||++++ ++...+|++||++++|.+||++|++++|||+|..
T Consensus 105 ~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 105 FLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 999875 4557899999999999999999999999999985
No 2
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=5.7e-42 Score=293.22 Aligned_cols=127 Identities=40% Similarity=0.735 Sum_probs=116.4
Q ss_pred hHHHHHHHHhcC-CCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHH
Q 023884 2 AATRRLRDLQSQ-PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERL 80 (276)
Q Consensus 2 ~a~~~L~~L~~~-p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~VrSvtmD~Ws~~el~~m~~gGN~~~ 80 (276)
++.++|++|++. |+|++|+||++++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||++|+.+||.++
T Consensus 7 ~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~a 86 (163)
T 3sub_A 7 AAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKC 86 (163)
T ss_dssp HHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHHH
Confidence 478899999875 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCCCchhhh
Q 023884 81 NTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKET 129 (276)
Q Consensus 81 n~~~e~~~~~~~~~i~~KY~s~aa~~yr~kl~~~~egr~~~~~p~~~e~ 129 (276)
|+||++++... ..++.||++++|.+||++|+++++|++...++++.|.
T Consensus 87 n~~~e~~g~~~-~~p~~KY~s~aA~~Yr~~L~~~v~~~~~p~~~~~~~~ 134 (163)
T 3sub_A 87 QTYLENYGISD-FIPERKYRTKAADHYRKILRSIVHNVDPPAPLPLDEG 134 (163)
T ss_dssp HHHHHHTTCTT-SCHHHHTTBHHHHHHHHHHHHHHTTCCCCCCCCGGGT
T ss_pred HHHHHHcCCcc-cChhhcCCCHHHHHHHHHHHHHHcCCCCCCCCccccc
Confidence 99999998764 3457899999999999999999999877766665443
No 3
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.1e-41 Score=285.67 Aligned_cols=113 Identities=34% Similarity=0.722 Sum_probs=107.4
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHHH
Q 023884 4 TRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTF 83 (276)
Q Consensus 4 ~~~L~~L~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~VrSvtmD~Ws~~el~~m~~gGN~~~n~~ 83 (276)
+++|+.|++.|+|++|+|||+++|+|||++||||||++|+|+||.||+||||||||+||.|+++||++|+.+||..+|+|
T Consensus 24 ~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an~~ 103 (138)
T 2owa_A 24 DNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNY 103 (138)
T ss_dssp HHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHHHH
Confidence 34556699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh-cCCCCCCChhhhccchHHHHHHHHHHHHHc
Q 023884 84 LSQ-YGIPKETDIVTKYNTNAASIYRDRIQAIAE 116 (276)
Q Consensus 84 ~e~-~~~~~~~~i~~KY~s~aa~~yr~kl~~~~e 116 (276)
|++ +++....++++||++.++..||++|.++++
T Consensus 104 ~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL~~~~~ 137 (138)
T 2owa_A 104 FKQVLGVNFSPKTKEYASSICGRQYKQILDSEIS 137 (138)
T ss_dssp HHHHTCTTCCGGGCHHHHSHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHhhHHHHHHHHHHHHHHh
Confidence 998 888888899999999999999999998875
No 4
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=3.7e-41 Score=285.56 Aligned_cols=113 Identities=48% Similarity=0.977 Sum_probs=107.8
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCcccceeecccCC-CCHHHHHHHHhcChHHHH
Q 023884 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDS-WSEIQIKKMEAGGNERLN 81 (276)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~VrSvtmD~-Ws~~el~~m~~gGN~~~n 81 (276)
.+++|++|++.|+|++|+||++++|+|||++||||||++|+||||.||+||||||||+||. |+++||++|+.+||.++|
T Consensus 16 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~an 95 (149)
T 2crw_A 16 ILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASAS 95 (149)
T ss_dssp HHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999996 999999999999999999
Q ss_pred HHHhhcCCCCCCChhhhccchHHHHHHHHHHHHHc
Q 023884 82 TFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAE 116 (276)
Q Consensus 82 ~~~e~~~~~~~~~i~~KY~s~aa~~yr~kl~~~~e 116 (276)
+||++++.. ..+|++||+++++++||++|+++++
T Consensus 96 ~~~e~~~~~-~~~i~~KY~s~~a~~Yr~~l~~~~~ 129 (149)
T 2crw_A 96 SFFHQHGCS-TNDTNAKYNSRAAQLYREKIKSLAS 129 (149)
T ss_dssp HHHHHHCCC-CCCHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-CcchhhCcCcHHHHHHHHHHHHHHH
Confidence 999999876 5789999999999999999998776
No 5
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=9.3e-41 Score=281.43 Aligned_cols=114 Identities=46% Similarity=0.941 Sum_probs=108.0
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCcccceeecccCC-CCHHHHHHHHhcChHHHH
Q 023884 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDS-WSEIQIKKMEAGGNERLN 81 (276)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~VrSvtmD~-Ws~~el~~m~~gGN~~~n 81 (276)
.+++|+.|++.|+|++|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||. |+++||++|+.+||.++|
T Consensus 24 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~an 103 (144)
T 2p57_A 24 IQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANAT 103 (144)
T ss_dssp HHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHHHH
Confidence 4667888999999999999999999999999999999999999999999999999999996 999999999999999999
Q ss_pred HHHhhcCCCCCCChhhhccchHHHHHHHHHHHHHcC
Q 023884 82 TFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEG 117 (276)
Q Consensus 82 ~~~e~~~~~~~~~i~~KY~s~aa~~yr~kl~~~~eg 117 (276)
+||++++.+. .+|++||++++|.+||++|+++++.
T Consensus 104 ~~~e~~g~~~-~~~~~KY~s~aA~~Yr~~l~~~~~~ 138 (144)
T 2p57_A 104 AFFRQHGCTA-NDANTKYNSRAAQMYREKIRQLGSA 138 (144)
T ss_dssp HHHHHTTCCC-CSHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCC-CchhhccCcHHHHHHHHHHHHHHHH
Confidence 9999998875 4899999999999999999988764
No 6
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=3.4e-37 Score=259.06 Aligned_cols=120 Identities=27% Similarity=0.518 Sum_probs=103.2
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 023884 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (276)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~VrSvtmD~Ws~~el~~m~~gGN~~~n~ 82 (276)
..++|++|++.|+|++|+|||+++|+|||++||||||++|+||||.||+| |+||||+||.|+++||++|+.+||..+|+
T Consensus 12 ~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN~~an~ 90 (140)
T 2olm_A 12 HLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQ 90 (140)
T ss_dssp HHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhccHHHHH
Confidence 45789999999999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHhhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCCCch
Q 023884 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVV 126 (276)
Q Consensus 83 ~~e~~~~~~~~~i~~KY~s~aa~~yr~kl~~~~egr~~~~~p~~ 126 (276)
||+++..+...... +......++++|+++|+.+.|+.++..
T Consensus 91 ~~e~~~~~~~~~~P---~~~d~~~~~~fIr~KYe~k~f~~~~~~ 131 (140)
T 2olm_A 91 IWLGLFDDRSSAIP---DFRDPQKVKEFLQEKYEKKRWYVPPEQ 131 (140)
T ss_dssp HHTTTCCTTTSCCC---CTTCHHHHHHHHHHHHTSCTTCCCHHH
T ss_pred HHHhhCCcccCCCC---CCCCHHHHHHHHHHHHcCCeeeCCccc
Confidence 99975432221111 122235688999999999999987544
No 7
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=256.91 Aligned_cols=114 Identities=36% Similarity=0.634 Sum_probs=99.7
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHHH
Q 023884 4 TRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTF 83 (276)
Q Consensus 4 ~~~L~~L~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~VrSvtmD~Ws~~el~~m~~gGN~~~n~~ 83 (276)
+++|++|++.|+|+.|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||++|+.+||..+|+|
T Consensus 15 ~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~ 94 (134)
T 2iqj_A 15 QAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRL 94 (134)
T ss_dssp HHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCC
Q 023884 84 LSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDP 123 (276)
Q Consensus 84 ~e~~~~~~~~~i~~KY~s~aa~~yr~kl~~~~egr~~~~~ 123 (276)
|+++..+ .. . +-.. ....+++|+++|+.+.|+.+
T Consensus 95 ~e~~lp~-~~-~--~P~~--~~~~e~fIr~KY~~k~f~~~ 128 (134)
T 2iqj_A 95 YEAYLPE-TF-R--RPQI--DPAVEGFIRDKYEKKKYMDR 128 (134)
T ss_dssp HTTTCCS-SC-C--CCCS--HHHHHHHHHHHHTSCTTCCT
T ss_pred HHhcCCc-cC-C--CCCc--hHHHHHHHHHHHhCCeeeCC
Confidence 9965322 11 0 0011 12457899999999999975
No 8
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=5.3e-37 Score=258.16 Aligned_cols=116 Identities=34% Similarity=0.550 Sum_probs=101.0
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 023884 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (276)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~VrSvtmD~Ws~~el~~m~~gGN~~~n~ 82 (276)
.+++|++|++.|+|++|+||++++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||++|+.+||..+|+
T Consensus 16 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~ 95 (141)
T 2crr_A 16 HQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARL 95 (141)
T ss_dssp HHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHHccHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCCC
Q 023884 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (276)
Q Consensus 83 ~~e~~~~~~~~~i~~KY~s~aa~~yr~kl~~~~egr~~~~~p 124 (276)
||+++..+. . .+ -.. ....+++|+++|+.+.|+++.
T Consensus 96 ~~e~~lp~~-~-~~--P~~--~~~~e~fIr~KY~~k~f~~~~ 131 (141)
T 2crr_A 96 LYEANLPEN-F-RR--PQT--DQAVEFFIRDKYEKKKYYDKN 131 (141)
T ss_dssp HGGGSCCTT-C-CC--CCS--HHHHHHHHHHHHTSCTTCCCG
T ss_pred HHHhcCCcc-c-CC--CCc--hHHHHHHHHHHHhcCcccCCC
Confidence 999764321 1 00 011 124567999999999999753
No 9
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=269.58 Aligned_cols=122 Identities=48% Similarity=0.969 Sum_probs=115.5
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 023884 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (276)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~VrSvtmD~Ws~~el~~m~~gGN~~~n~ 82 (276)
++++|++|++.|+|+.|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|++++|++|+.+||.++|+
T Consensus 24 ~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~~~n~ 103 (329)
T 3o47_A 24 TRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFRE 103 (329)
T ss_dssp HHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC-CCCCChhhhccchHHHHHHHHHHHHHcCCCCCCCC
Q 023884 83 FLSQYGI-PKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (276)
Q Consensus 83 ~~e~~~~-~~~~~i~~KY~s~aa~~yr~kl~~~~egr~~~~~p 124 (276)
||++++. .....+.++|.+.++.+|++++..+.++++|...+
T Consensus 104 ~~e~~~~~~~~~~i~~~y~s~~A~lYr~kl~~~~~~~~~~~~~ 146 (329)
T 3o47_A 104 FLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLES 146 (329)
T ss_dssp HHHTCSSCCTTCCHHHHHHSHHHHHHHHHHHHHHTTCCCCSCC
T ss_pred HHHhcCCCCCCCCccccccchHHHHHhhhccccccCCcccccc
Confidence 9998753 44678999999999999999999999999998753
No 10
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.97 E-value=8.9e-32 Score=254.69 Aligned_cols=118 Identities=32% Similarity=0.500 Sum_probs=98.8
Q ss_pred HHHHHHhcCCCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHHHH
Q 023884 5 RRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFL 84 (276)
Q Consensus 5 ~~L~~L~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~VrSvtmD~Ws~~el~~m~~gGN~~~n~~~ 84 (276)
++|+.|++.|+|++|+||++++|+|||++||||||++|+||||.||+|||+||||+||.|++++|++|+.+||..+|+||
T Consensus 34 ~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~~~n~~~ 113 (368)
T 3jue_A 34 HVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIY 113 (368)
T ss_dssp CHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCCC
Q 023884 85 SQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (276)
Q Consensus 85 e~~~~~~~~~i~~KY~s~aa~~yr~kl~~~~egr~~~~~p 124 (276)
++...+... .+....+. .+...++|+++|+.+.|....
T Consensus 114 e~~~~~~~~-~kp~~~~~-~~~re~fIr~KY~~k~f~~~l 151 (368)
T 3jue_A 114 EARVEAMAV-KKPGPSCS-RQEKEAWIHAKYVEKKFLTKL 151 (368)
T ss_dssp TTTTTTTTC-CCCCTTSC-HHHHHHHHHHHHTSCTTCCSC
T ss_pred HhhcccccC-cCCCCCCC-HHHHHHHHHHHHHhhcccccc
Confidence 965322110 00001111 123455899999999998753
No 11
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.97 E-value=2.5e-31 Score=254.19 Aligned_cols=118 Identities=31% Similarity=0.568 Sum_probs=99.6
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 023884 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (276)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~VrSvtmD~Ws~~el~~m~~gGN~~~n~ 82 (276)
.+++|++|++.|+|+.|+||++++|+|||++||||||++|||+||+| +|||+||||+||.|++++|++|+.+||..+|+
T Consensus 21 ~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~gN~~~~~ 99 (386)
T 3lju_X 21 RRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAARA 99 (386)
T ss_dssp HHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhcchHHHH
Confidence 57899999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHhhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCCC
Q 023884 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (276)
Q Consensus 83 ~~e~~~~~~~~~i~~KY~s~aa~~yr~kl~~~~egr~~~~~p 124 (276)
||+++..+ .. .+..-.+ ....-.++|+++|+.+.|+.++
T Consensus 100 ~~e~~~~~-~~-~~p~~~~-~~~~~e~fIr~KY~~~~f~~~~ 138 (386)
T 3lju_X 100 RFESKVPS-FY-YRPTPSD-CQLLREQWIRAKYERQEFIYPE 138 (386)
T ss_dssp HHTTTCCT-TS-CCCCTTS-CHHHHHHHHHHHHTSCTTTSGG
T ss_pred HHhccCCc-cC-CCCCCcc-chHHHHHEHHhhhCCCEEECCc
Confidence 99976422 11 0101111 1122345899999999999864
No 12
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.96 E-value=7.8e-29 Score=226.36 Aligned_cols=119 Identities=27% Similarity=0.460 Sum_probs=97.2
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 023884 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (276)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~VrSvtmD~Ws~~el~~m~~gGN~~~n~ 82 (276)
++++|++|++.|+|++|+||++++|+|||++||||||++|+|+||.||+|||+||||+||.|+.++|.+|+.+||..+|+
T Consensus 29 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~~n~ 108 (301)
T 2b0o_E 29 TKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNE 108 (301)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCC
Q 023884 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDP 123 (276)
Q Consensus 83 ~~e~~~~~~~~~i~~KY~s~aa~~yr~kl~~~~egr~~~~~ 123 (276)
+|+........ .+.. .........++|.++++.+.|..+
T Consensus 109 i~E~~l~~~~~-~kP~-~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 109 VMEAQLPSHGG-PKPS-AESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHTTTCCSSSC-SCCC-TTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHhhhhccC-CCCC-CcccHHHHHHHHHHHHHhhhhhcc
Confidence 99854322100 0000 011122345577788888777654
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.95 E-value=4.2e-29 Score=225.44 Aligned_cols=119 Identities=28% Similarity=0.511 Sum_probs=99.1
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 023884 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (276)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~VrSvtmD~Ws~~el~~m~~gGN~~~n~ 82 (276)
++++|++|++.|+|+.|+|||+++|+|+|++||||||++|+|+||.||+|||+|||++||.|..++|..|+.+||..+|+
T Consensus 4 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~ 83 (278)
T 1dcq_A 4 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE 83 (278)
T ss_dssp HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCC
Q 023884 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDP 123 (276)
Q Consensus 83 ~~e~~~~~~~~~i~~KY~s~aa~~yr~kl~~~~egr~~~~~ 123 (276)
||+..... ....+....+.. ....++|+++|..++|..+
T Consensus 84 i~e~~l~~-~~~~kP~~~s~~-~~~~~fI~aKYl~~~f~~~ 122 (278)
T 1dcq_A 84 IMECCLPS-EDPVKPNPGSDM-IARKDYITAKYMERRYARK 122 (278)
T ss_dssp HHTTTCCS-SSCCSCCTTCCH-HHHHHHHHHHHTTCTTSCC
T ss_pred HHHhhCCh-hhcCCCCCCCCH-HHHHHHHHHHHHHhhcccc
Confidence 99965322 211111111111 2456678888888777654
No 14
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=1.9e-28 Score=236.90 Aligned_cols=119 Identities=27% Similarity=0.463 Sum_probs=98.8
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 023884 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (276)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~VrSvtmD~Ws~~el~~m~~gGN~~~n~ 82 (276)
++++|+.|++.|+|+.|+||++++|+|+|+++|||||++|||+||.||+|||+||||+||.|+.+++++|+.+||..+|.
T Consensus 10 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~an~ 89 (497)
T 3lvq_E 10 TKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNE 89 (497)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCC
Q 023884 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDP 123 (276)
Q Consensus 83 ~~e~~~~~~~~~i~~KY~s~aa~~yr~kl~~~~egr~~~~~ 123 (276)
+|+......... +.... ......+++|.++|+.+.|..+
T Consensus 90 i~E~~lp~~~~~-kP~~~-s~~~~re~fIraky~~~~f~~~ 128 (497)
T 3lvq_E 90 VMEAQLPSHGGP-KPSAE-SDMGTRRDYIMAKYVEHRFARR 128 (497)
T ss_dssp HHTTTCCSSSCS-CCCTT-CCHHHHHHHHHHHHTTCTTSCC
T ss_pred HHHhhcccccCC-CCCCc-CcHHHHHHHHHHHhhccccccc
Confidence 999654221111 11111 1123455678888888888654
No 15
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=88.23 E-value=0.3 Score=32.69 Aligned_cols=35 Identities=26% Similarity=0.564 Sum_probs=29.6
Q ss_pred CCccCCCC-CCCCceEeccccceehhhhhhhccCCC
Q 023884 17 KICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGV 51 (276)
Q Consensus 17 k~C~DCga-~~P~WaS~~~GiFICl~CsgiHR~LGv 51 (276)
+.|++|+. .-|.|=.-..|-.||-.|.-..+..|+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 57999999 578999999999999999877666554
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=87.82 E-value=0.36 Score=32.79 Aligned_cols=38 Identities=26% Similarity=0.677 Sum_probs=32.5
Q ss_pred CCCCccCCCC-CCCCceEeccccceehhhhhhhccCCCc
Q 023884 15 GNKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (276)
Q Consensus 15 ~Nk~C~DCga-~~P~WaS~~~GiFICl~CsgiHR~LGvh 52 (276)
..+.|.+|+. .-|.|=.-..|..||-.|.-.++..|++
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 5678999999 6789999999999999999877776654
No 17
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=85.73 E-value=0.42 Score=34.51 Aligned_cols=39 Identities=15% Similarity=0.411 Sum_probs=33.1
Q ss_pred CCCCCCccCCCC-CCCCceEeccccceehhhhhhhccCCC
Q 023884 13 QPGNKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGV 51 (276)
Q Consensus 13 ~p~Nk~C~DCga-~~P~WaS~~~GiFICl~CsgiHR~LGv 51 (276)
......|++|+. .-|.|=.-..|-.||-.|.-.++..|+
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 456789999999 678999999999999999877776555
No 18
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=85.55 E-value=0.48 Score=41.48 Aligned_cols=49 Identities=14% Similarity=0.415 Sum_probs=37.0
Q ss_pred CCCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcCh
Q 023884 13 QPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGN 77 (276)
Q Consensus 13 ~p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~VrSvtmD~Ws~~el~~m~~gGN 77 (276)
.|.-..|+.||.+...+.++..|.++|..|...+ .++.+++..|+..-.
T Consensus 147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~ 195 (244)
T 1u5k_A 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVR 195 (244)
T ss_dssp CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTT
T ss_pred CCCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHh
Confidence 3455689999999667889999999999985321 367788888865433
No 19
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=81.87 E-value=0.98 Score=32.82 Aligned_cols=39 Identities=26% Similarity=0.531 Sum_probs=32.7
Q ss_pred CCCCCccCCCC-CCCCceEeccccceehhhhhhhccCCCc
Q 023884 14 PGNKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (276)
Q Consensus 14 p~Nk~C~DCga-~~P~WaS~~~GiFICl~CsgiHR~LGvh 52 (276)
.....|++|+. .-|.|-.-..|-.||-.|.-.++..|++
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~ 46 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVV 46 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCC
Confidence 45689999999 6899999999999999998777765553
No 20
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=74.67 E-value=0.58 Score=34.56 Aligned_cols=43 Identities=23% Similarity=0.466 Sum_probs=32.4
Q ss_pred CCCCCccCCCC-CCCCceE--eccccceehhhhhhhccCCCcccceeeccc
Q 023884 14 PGNKICVDCAQ-KNPQWAS--VSYGVFMCLECSGKHRGLGVHISFVRSVTM 61 (276)
Q Consensus 14 p~Nk~C~DCga-~~P~WaS--~~~GiFICl~CsgiHR~LGvhiS~VrSvtm 61 (276)
.....|.+|+. .-|.|=. -.-| .||-.|.-.++..+++ |-++|
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~----RP~~~ 51 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKT----RPVTA 51 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSC----CCTHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCC----CCccc
Confidence 34679999999 6789998 5777 8999999888776654 55444
No 21
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=73.14 E-value=1.7 Score=34.65 Aligned_cols=37 Identities=27% Similarity=0.719 Sum_probs=30.0
Q ss_pred CCCccCCCC-CCCCceEeccccceehhhhhhhccCCCc
Q 023884 16 NKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (276)
Q Consensus 16 Nk~C~DCga-~~P~WaS~~~GiFICl~CsgiHR~LGvh 52 (276)
-+.|++|++ .-|.|-.-..|-+||-.|.-.++..|++
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~n 42 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQN 42 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccc
Confidence 468999998 6899999899999999998777654443
No 22
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=70.18 E-value=2.9 Score=30.92 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=32.3
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccccceehhhhh
Q 023884 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (276)
Q Consensus 3 a~~~L~~L-~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~Csg 44 (276)
.|+.+.+| ........|.-||.....+.. .||+.|..|--
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 57778887 778888999999987666654 59999999954
No 23
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=61.62 E-value=6.3 Score=31.29 Aligned_cols=39 Identities=15% Similarity=0.409 Sum_probs=32.7
Q ss_pred CCCCCccCCCC-CCCCceEeccccceehhhhhhhccCCCc
Q 023884 14 PGNKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (276)
Q Consensus 14 p~Nk~C~DCga-~~P~WaS~~~GiFICl~CsgiHR~LGvh 52 (276)
.....|++|+. .-|.|-.-..|-.||-.|.-.++..+++
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 45679999999 6799999999999999998777665554
No 24
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=60.94 E-value=3.3 Score=38.30 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=22.9
Q ss_pred ChHHHHHHHHh---cCCCC--CCccCCCCCCCCc-eEeccccceehhhhhhh
Q 023884 1 MAATRRLRDLQ---SQPGN--KICVDCAQKNPQW-ASVSYGVFMCLECSGKH 46 (276)
Q Consensus 1 m~a~~~L~~L~---~~p~N--k~C~DCga~~P~W-aS~~~GiFICl~CsgiH 46 (276)
|+||+.+..-. ...-| ..|-+|+..+|.- ....-|-.||.+|--|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp ----------------CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred CccHHHHHhcccccCccccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 78888877652 22223 3799999975422 24567999999997654
No 25
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=55.82 E-value=6.2 Score=29.85 Aligned_cols=30 Identities=27% Similarity=0.779 Sum_probs=24.4
Q ss_pred CCCCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 15 ~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
+++.|.-|+.+.- ...|||+.|..|++..|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 4788999998653 46899999999998766
No 26
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=51.17 E-value=11 Score=27.09 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHh----cChHHHHHHHhhcCC
Q 023884 62 DSWSEIQIKKMEA----GGNERLNTFLSQYGI 89 (276)
Q Consensus 62 D~Ws~~el~~m~~----gGN~~~n~~~e~~~~ 89 (276)
-.|++||.+.|.. .|+ .+..++..|..
T Consensus 9 ~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f 39 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF 39 (62)
T ss_dssp SSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC
Confidence 4899999988865 588 89998876643
No 27
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=50.96 E-value=8.9 Score=26.90 Aligned_cols=39 Identities=26% Similarity=0.699 Sum_probs=28.9
Q ss_pred CCCCCccCCCCCCCCceEeccccceehhhhhhhccCCCccccee
Q 023884 14 PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVR 57 (276)
Q Consensus 14 p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR~LGvhiS~Vr 57 (276)
++-+.|.-||.+.- .--.||+.||-.|- |.+-..|.|||
T Consensus 16 ~g~~rC~vcGr~~g--~iRkfGL~~cR~cf---Re~A~~iGF~k 54 (56)
T 3iz6_N 16 AGSRVCRVCGNSHG--LIRKYGLMCCRQCF---RSDAKDIGFIK 54 (56)
T ss_dssp CCCCCCSSCCCSCC--CTTTTSCTTHHHHH---HTTCCSTTCCS
T ss_pred CCcceeecCCCCcc--cccccCCcHHHHHH---HHHHHhcCcee
Confidence 35689999999653 23489999999884 56666777776
No 28
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=50.00 E-value=9.2 Score=28.62 Aligned_cols=30 Identities=23% Similarity=0.655 Sum_probs=25.4
Q ss_pred CCCCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 15 ~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
....|.-|+.+.. ...|||+.|..|++..|
T Consensus 3 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (84)
T 1hcq_A 3 ETRYCAVCNDYAS---GYHYGVWSCEGCKAFFK 32 (84)
T ss_dssp CCCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCcEECCCCC---CeeeCccchHHhhhhhh
Confidence 5678999998653 67999999999999877
No 29
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=49.50 E-value=7.2 Score=30.93 Aligned_cols=34 Identities=24% Similarity=0.646 Sum_probs=24.1
Q ss_pred hcCCCCCCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 11 QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 11 ~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
...+....|.-|+.+. ....|||+.|..|++..|
T Consensus 4 ~~~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFR 37 (113)
T 2a66_A 4 GDEDLEELCPVCGDKV---SGYHYGLLTCESCKGFFK 37 (113)
T ss_dssp ------CBCTTTCCBE---EEEETTEEEEHHHHHHHH
T ss_pred CCCCCCCCCcEeCCCC---cceeeCcccHHHHHHHHh
Confidence 3445678899999754 267999999999999877
No 30
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=48.96 E-value=5.4 Score=30.03 Aligned_cols=41 Identities=20% Similarity=0.554 Sum_probs=30.0
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccccceehhhhhh
Q 023884 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGK 45 (276)
Q Consensus 3 a~~~L~~L-~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~Csgi 45 (276)
.|+.+.+| ......-.|..||+..- -.+..||+.|..|-..
T Consensus 13 lRk~vk~ie~~q~~~y~Cp~CG~~~v--~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 13 SRRRVAEIESEMNEDHACPNCGEDRV--DRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEEE--EEEETTEEEETTTCCE
T ss_pred HHHHHHHHHHhccccCcCCCCCCcce--eccCCCeEECCCCCCE
Confidence 46677776 56667889999998432 3456799999999543
No 31
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=48.92 E-value=4.4 Score=32.24 Aligned_cols=32 Identities=16% Similarity=0.480 Sum_probs=24.0
Q ss_pred CCCCccCCCCCCCC-ceEeccccceehhhhhhh
Q 023884 15 GNKICVDCAQKNPQ-WASVSYGVFMCLECSGKH 46 (276)
Q Consensus 15 ~Nk~C~DCga~~P~-WaS~~~GiFICl~CsgiH 46 (276)
+..+|.+|+...-. |..-+|++-||..|....
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 45679999995333 335689999999998653
No 32
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=48.54 E-value=6 Score=32.84 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=23.0
Q ss_pred CCCCCccCCCCCCCC-ceEeccccceehhhhhhhc
Q 023884 14 PGNKICVDCAQKNPQ-WASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 14 p~Nk~C~DCga~~P~-WaS~~~GiFICl~CsgiHR 47 (276)
..-..|.+||.+=|. -.-.--++-.|+.|...|-
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 456799999997552 1122335778999998764
No 33
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=46.83 E-value=9.3 Score=29.84 Aligned_cols=31 Identities=26% Similarity=0.697 Sum_probs=25.4
Q ss_pred CCCCCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 14 PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 14 p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
+....|.-||.+. ....|||+.|..|++..|
T Consensus 5 ~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFR 35 (105)
T 1r4i_A 5 PPQKTCLICGDEA---SGAHYGALTCGSCKVFFK 35 (105)
T ss_dssp -CCCBCSSSCSBE---EEEETTEEEEHHHHHHHH
T ss_pred CCCCCCcEeCCCC---CceEeCCcchhhhhhhhc
Confidence 4578899999753 367899999999999887
No 34
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=46.41 E-value=11 Score=29.98 Aligned_cols=30 Identities=23% Similarity=0.736 Sum_probs=25.4
Q ss_pred CCCCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 15 ~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
....|.-||.+.- ...|||+.|..|++..|
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 36 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFR 36 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhh
Confidence 4678999998643 67999999999999877
No 35
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=44.51 E-value=4.9 Score=32.27 Aligned_cols=40 Identities=18% Similarity=0.551 Sum_probs=29.4
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccccceehhhhh
Q 023884 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (276)
Q Consensus 3 a~~~L~~L-~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~Csg 44 (276)
.|+.+.+| ......-.|.-||..... -+..||+.|..|--
T Consensus 46 lRK~vkkiE~~q~akytCPfCGk~~vK--R~avGIW~C~~Cgk 86 (116)
T 3cc2_Z 46 SRRRVAEIESEMNEDHACPNCGEDRVD--RQGTGIWQCSYCDY 86 (116)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEEEE--EEETTEEEETTTCC
T ss_pred HHHHHHHHHHHhccCCcCCCCCCceeE--ecCceeEECCCCCC
Confidence 46667776 666678899999985443 34469999999953
No 36
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=44.35 E-value=11 Score=28.62 Aligned_cols=31 Identities=29% Similarity=0.675 Sum_probs=25.9
Q ss_pred CCCCCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 14 PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 14 p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
+.+..|.-|+.+.- ...|||+.|..|++..|
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFK 35 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhh
Confidence 45678999998654 46899999999999887
No 37
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=43.66 E-value=12 Score=28.61 Aligned_cols=30 Identities=27% Similarity=0.804 Sum_probs=24.8
Q ss_pred CCCCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 15 ~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
....|.-||.+.- ...|||+.|..|++..|
T Consensus 9 ~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFR 38 (93)
T 2han_A 9 SKHLCSICGDRAS---GKHYGVYSCEGCKGFFK 38 (93)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCCcEeCCCCc---CeecCcchhHHHHHHHH
Confidence 3578999998653 57999999999999876
No 38
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=43.50 E-value=2.9 Score=33.14 Aligned_cols=32 Identities=25% Similarity=0.579 Sum_probs=21.6
Q ss_pred CCCccCCCCCCCC-ceEeccccceehhhhhhhc
Q 023884 16 NKICVDCAQKNPQ-WASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 16 Nk~C~DCga~~P~-WaS~~~GiFICl~CsgiHR 47 (276)
--+|.+||.+=|. -.-.--++..|++|...+-
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 5699999997542 1122335778999997654
No 39
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=43.41 E-value=10 Score=26.40 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=20.4
Q ss_pred CCccCCCCCCCCceEeccccceehhhhhh
Q 023884 17 KICVDCAQKNPQWASVSYGVFMCLECSGK 45 (276)
Q Consensus 17 k~C~DCga~~P~WaS~~~GiFICl~Csgi 45 (276)
.+|-+|+..... ....-|..||..|--+
T Consensus 12 ~~Cp~C~~~~lv-~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAILV-EDYRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSCCE-ECSSSCCEECTTTCCE
T ss_pred ccCcCCCCCcee-EeCCCCeEEeCCCCCE
Confidence 479999986532 2446799999999544
No 40
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=43.27 E-value=10 Score=29.42 Aligned_cols=28 Identities=32% Similarity=0.781 Sum_probs=23.4
Q ss_pred CCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 17 KICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 17 k~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
..|.-||.+.- ...|||+.|..|++..|
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFR 29 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFR 29 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhe
Confidence 57999997653 56899999999999877
No 41
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=40.82 E-value=16 Score=27.56 Aligned_cols=27 Identities=30% Similarity=0.715 Sum_probs=22.6
Q ss_pred CccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 18 ICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 18 ~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
.|.-|+.+.- ...|||+.|..|++..|
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 28 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFK 28 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhce
Confidence 5888997643 57899999999999876
No 42
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=39.64 E-value=11 Score=29.19 Aligned_cols=29 Identities=31% Similarity=0.867 Sum_probs=23.1
Q ss_pred CCCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 16 NKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 16 Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
...|.-||.+.- ...|||+.|..|++..|
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 31 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFK 31 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHH
Confidence 357999998653 56899999999999887
No 43
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=39.22 E-value=11 Score=28.24 Aligned_cols=28 Identities=39% Similarity=0.795 Sum_probs=23.1
Q ss_pred CCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 17 KICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 17 k~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
+.|.-||.+.- ...|||+.|..|++..|
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFR 32 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHH
Confidence 56999998654 46899999999999887
No 44
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=39.11 E-value=14 Score=28.22 Aligned_cols=30 Identities=30% Similarity=0.667 Sum_probs=24.0
Q ss_pred CCCCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 15 ~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
....|.-||.+.- ...|||+.|..|++..|
T Consensus 6 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (94)
T 1a6y_A 6 MVLLCKVCGDVAS---GFHYGVLACEGCKGFFR 35 (94)
T ss_dssp --CBCTTTSSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCcEeCCCCc---ceEeCccchhhhhhehh
Confidence 3467999998653 57899999999999877
No 45
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.95 E-value=13 Score=28.19 Aligned_cols=39 Identities=23% Similarity=0.589 Sum_probs=28.1
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccccceehhhh
Q 023884 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECS 43 (276)
Q Consensus 3 a~~~L~~L-~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~Cs 43 (276)
.|+.+.+| .+....-.|.-||...... +..|||-|-.|-
T Consensus 21 lRK~vkkie~~q~~ky~CpfCGk~~vkR--~a~GIW~C~kCg 60 (83)
T 3j21_i 21 IRRRVAAVEAKMRQKHTCPVCGRKAVKR--ISTGIWQCQKCG 60 (83)
T ss_dssp HHHHHHHHHHHHHSCBCCSSSCSSCEEE--EETTEEEETTTC
T ss_pred HHHHHHHHHHHhhcccCCCCCCCceeEe--cCcCeEEcCCCC
Confidence 35555555 3445667899999986554 457999999994
No 46
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=38.03 E-value=9.6 Score=29.37 Aligned_cols=29 Identities=24% Similarity=0.700 Sum_probs=24.3
Q ss_pred CCCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 16 NKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 16 Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
...|.-||.+.- ...|||+.|..|++..|
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (98)
T 1lo1_A 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFK 32 (98)
T ss_dssp CCEETTTTEECS---EESSSSEECHHHHHHHH
T ss_pred CCCCcEeCCCCc---CeeeCccchhhhhhhhe
Confidence 467999997653 56899999999999877
No 47
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=37.09 E-value=17 Score=27.99 Aligned_cols=39 Identities=23% Similarity=0.514 Sum_probs=27.9
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccccceehhhh
Q 023884 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECS 43 (276)
Q Consensus 3 a~~~L~~L-~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~Cs 43 (276)
.|+.+.+| .+....-.|.-||....... ..||+-|-.|-
T Consensus 22 lRK~vkkie~~q~~ky~CpfCgk~~vkR~--a~GIW~C~~C~ 61 (92)
T 3izc_m 22 LRRQVKKLEIQQHARYDCSFCGKKTVKRG--AAGIWTCSCCK 61 (92)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCSSCCEEE--ETTEEECTTTC
T ss_pred HHHHHHHHHHHHhcCCcCCCCCCceeeec--ccceEEcCCCC
Confidence 34555555 34456678999998876554 57999999994
No 48
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=35.30 E-value=18 Score=34.26 Aligned_cols=30 Identities=33% Similarity=0.639 Sum_probs=24.5
Q ss_pred CCCCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 15 ~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
-+..|.-||.+.-. ..|||+.|..|++..|
T Consensus 49 ~~~~C~vC~~~~~g---~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 49 MAIECRVCGDKASG---FHYGVHACEGCKGFFR 78 (419)
T ss_dssp -CCCCSSSCSCCCS---BCSSSBCCHHHHHHHH
T ss_pred CCCcCeECCCcCCC---CccCcccchhhhHHHc
Confidence 46789999987653 5899999999999766
No 49
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=35.17 E-value=15 Score=28.77 Aligned_cols=30 Identities=23% Similarity=0.639 Sum_probs=23.9
Q ss_pred CCCCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 15 ~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
....|.-||.+.- ...|||+.|..|++..|
T Consensus 5 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 34 (110)
T 1kb2_A 5 VPRICGVCGDRAT---GFHFNAMTCEGCKGFFR 34 (110)
T ss_dssp --CBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred cCCCCcEeCCCCC---ceEeCchhHhhhhhhhe
Confidence 3467999998654 46899999999999877
No 50
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=32.36 E-value=20 Score=33.17 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=20.7
Q ss_pred CccCCCCCCCCc-eEeccccceehhhhh
Q 023884 18 ICVDCAQKNPQW-ASVSYGVFMCLECSG 44 (276)
Q Consensus 18 ~C~DCga~~P~W-aS~~~GiFICl~Csg 44 (276)
+|-+|+...+.- ....-|-.||.+|--
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CGl 50 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTCB
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCCC
Confidence 799999854442 356789999999964
No 51
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=32.10 E-value=18 Score=27.86 Aligned_cols=38 Identities=18% Similarity=0.531 Sum_probs=27.0
Q ss_pred HHHHHHH-hcCCCCCCccCCCCCCCCceEeccccceehhhh
Q 023884 4 TRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECS 43 (276)
Q Consensus 4 ~~~L~~L-~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~Cs 43 (276)
|+.+.+| .+....-.|.-||...... +..||+-|-.|-
T Consensus 23 RK~vkkie~~q~~ky~CpfCgk~~vkR--~a~GIW~C~~Cg 61 (92)
T 3iz5_m 23 RKQIKKMEVSQHSKYFCEFCGKFAVKR--KAVGIWGCKDCG 61 (92)
T ss_dssp HHHHHHHHHHHHSCBCCTTTCSSCBEE--EETTEEECSSSC
T ss_pred HHHHHHHHHHHhccccCcccCCCeeEe--cCcceEEcCCCC
Confidence 4455554 3444566899999986555 457999999994
No 52
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.46 E-value=9.9 Score=26.18 Aligned_cols=24 Identities=21% Similarity=0.671 Sum_probs=19.8
Q ss_pred CCCCccCCCCCCCCceEeccccceehhhhh
Q 023884 15 GNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (276)
Q Consensus 15 ~Nk~C~DCga~~P~WaS~~~GiFICl~Csg 44 (276)
..++|..|++. +..||+-|..|-.
T Consensus 13 ~k~iCpkC~a~------~~~gaw~CrKCG~ 36 (51)
T 3j21_g 13 KKYVCLRCGAT------NPWGAKKCRKCGY 36 (51)
T ss_dssp SEEECTTTCCE------ECTTCSSCSSSSS
T ss_pred CCccCCCCCCc------CCCCceecCCCCC
Confidence 56799999998 4578999999953
No 53
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=29.25 E-value=15 Score=27.45 Aligned_cols=30 Identities=30% Similarity=0.826 Sum_probs=24.5
Q ss_pred CCCCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 15 ~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
.+..|.-|+.+.- ...|||+.|..|++..|
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 33 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFK 33 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHH
Confidence 4567999997643 45899999999999877
No 54
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=28.82 E-value=12 Score=27.58 Aligned_cols=38 Identities=24% Similarity=0.504 Sum_probs=26.3
Q ss_pred HHHHHHH-hcCCCCCCccCCCCCCCCceEeccccceehhhh
Q 023884 4 TRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECS 43 (276)
Q Consensus 4 ~~~L~~L-~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~Cs 43 (276)
|+.+.+| .+....-.|.-||...... +..||+-|..|-
T Consensus 13 RK~vkkie~~q~~ky~C~fCgk~~vkR--~a~GIW~C~~C~ 51 (72)
T 3jyw_9 13 RRQVKKLEIQQHARYDCSFCGKKTVKR--GAAGIWTCSCCK 51 (72)
T ss_dssp HTTTHHHHHHHHSCBCCSSCCSSCBSB--CSSSCBCCSSSC
T ss_pred HHHHHHHHHHhccCccCCCCCCceeEe--cCCCeEECCCCC
Confidence 3344444 3344567899999876655 457999999994
No 55
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=28.22 E-value=20 Score=26.27 Aligned_cols=27 Identities=30% Similarity=0.753 Sum_probs=22.2
Q ss_pred CccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 18 ICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 18 ~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
.|.-||.+.. ...||++.|..|++..|
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 28 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFR 28 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeee
Confidence 4888887654 46899999999999877
No 56
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=26.97 E-value=31 Score=27.39 Aligned_cols=31 Identities=26% Similarity=0.681 Sum_probs=23.7
Q ss_pred CCCCCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 14 PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 14 p~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
...+.|.-|+.+.- ...|||+.|..|++.-|
T Consensus 27 ~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 27 APPKLCLVCSDEAS---GCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp ---CBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCcCCcCCCcCc---ccccCCcccchhhhhhh
Confidence 35678999998653 56899999999998765
No 57
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=26.81 E-value=24 Score=26.88 Aligned_cols=26 Identities=27% Similarity=0.659 Sum_probs=18.8
Q ss_pred CCCCccCCCCCCCC-ceEec--cccceeh
Q 023884 15 GNKICVDCAQKNPQ-WASVS--YGVFMCL 40 (276)
Q Consensus 15 ~Nk~C~DCga~~P~-WaS~~--~GiFICl 40 (276)
....|.+|++.... |+.+. -|-+-|-
T Consensus 24 ~~~~C~~C~~~~~~lw~CL~~~Cg~vgCg 52 (97)
T 2uzg_A 24 SLGTCQDCKVQGPNLWACLENRCSYVGCG 52 (97)
T ss_dssp TTTCCSSSCCCCSSCEEECCTTCCCEECC
T ss_pred CCCcCcCcCCCCCCceeeecccCCCcccC
Confidence 45789999965555 87776 6666663
No 58
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=24.34 E-value=40 Score=24.43 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=20.0
Q ss_pred CCccCCCCCCCCceEe--ccccceehhhhhh
Q 023884 17 KICVDCAQKNPQWASV--SYGVFMCLECSGK 45 (276)
Q Consensus 17 k~C~DCga~~P~WaS~--~~GiFICl~Csgi 45 (276)
.+|-=||....+--.+ .-|+|||.+|..+
T Consensus 19 ~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~ 49 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGPSVYICDECVDL 49 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECSSCEEEHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCCCCChhHHHHHH
Confidence 5799999865433222 2379999999753
No 59
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=24.27 E-value=17 Score=28.59 Aligned_cols=40 Identities=15% Similarity=0.404 Sum_probs=27.7
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccccceehhhhh
Q 023884 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (276)
Q Consensus 3 a~~~L~~L-~~~p~Nk~C~DCga~~P~WaS~~~GiFICl~Csg 44 (276)
.|+.+.+| .+....-.|.-||...... ...|||-|-.|.-
T Consensus 22 lRK~vkkIE~~q~aky~CpfCgk~~vKR--~a~GIW~C~kCg~ 62 (103)
T 4a17_Y 22 LRKVVKKFEITQHAKYGCPFCGKVAVKR--AAVGIWKCKPCKK 62 (103)
T ss_dssp HHHHHHHHHHHHHSCEECTTTCCEEEEE--EETTEEEETTTTE
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCceeee--cCcceEEcCCCCC
Confidence 34555555 3445667899999876544 4579999999943
No 60
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=23.71 E-value=19 Score=34.63 Aligned_cols=30 Identities=30% Similarity=0.811 Sum_probs=23.9
Q ss_pred CCCCccCCCCCCCCceEeccccceehhhhhhhc
Q 023884 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (276)
Q Consensus 15 ~Nk~C~DCga~~P~WaS~~~GiFICl~CsgiHR 47 (276)
.++.|.-||.+.-. ..|||..|..|++..|
T Consensus 136 ~~~~C~VCg~~a~g---~hygv~sC~~Ck~FFr 165 (467)
T 3dzy_A 136 TKHICAICGDRSSG---KHYGVYSCEGCKGFFK 165 (467)
T ss_dssp -CEECTTTSSEECS---EETTEECCHHHHHHHH
T ss_pred CCCcceeCCCCCCC---CcCCCcchhhhhHhcc
Confidence 35679999986543 5899999999999776
No 61
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=23.51 E-value=52 Score=22.39 Aligned_cols=29 Identities=21% Similarity=0.509 Sum_probs=20.0
Q ss_pred CCCccCCCCCCCCceEe--ccccceehhhhh
Q 023884 16 NKICVDCAQKNPQWASV--SYGVFMCLECSG 44 (276)
Q Consensus 16 Nk~C~DCga~~P~WaS~--~~GiFICl~Csg 44 (276)
..+|-=||....+--.+ .-|+|||.+|..
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~ 41 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGPSVYICDECVD 41 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECSSCEEEHHHHH
T ss_pred CcEecCCCCCHHHhcccCCCCCCEehHHHHH
Confidence 45899999865432222 247999999975
No 62
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=22.47 E-value=37 Score=22.25 Aligned_cols=28 Identities=21% Similarity=0.623 Sum_probs=19.4
Q ss_pred CCCccCCCCCCCCceEeccccceehhhhh
Q 023884 16 NKICVDCAQKNPQWASVSYGVFMCLECSG 44 (276)
Q Consensus 16 Nk~C~DCga~~P~WaS~~~GiFICl~Csg 44 (276)
...|-+|+...-.+ ...-|.+||..|--
T Consensus 5 ~~~CP~C~~~~l~~-d~~~gelvC~~CG~ 32 (50)
T 1pft_A 5 QKVCPACESAELIY-DPERGEIVCAKCGY 32 (50)
T ss_dssp CCSCTTTSCCCEEE-ETTTTEEEESSSCC
T ss_pred cEeCcCCCCcceEE-cCCCCeEECcccCC
Confidence 35799998853322 33568899999943
No 63
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=22.06 E-value=55 Score=25.44 Aligned_cols=24 Identities=25% Similarity=0.652 Sum_probs=18.6
Q ss_pred CCCccCCCCCCCCceEecccccee
Q 023884 16 NKICVDCAQKNPQWASVSYGVFMC 39 (276)
Q Consensus 16 Nk~C~DCga~~P~WaS~~~GiFIC 39 (276)
...|.+|+.....|+++.-|-+-|
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYC 47 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEE
T ss_pred CCcCccccCCCCeeeeeecCcccc
Confidence 568999999887787666666666
No 64
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=21.51 E-value=35 Score=25.70 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=9.3
Q ss_pred CCCcccccCCC
Q 023884 241 QGGKYVGFGST 251 (276)
Q Consensus 241 QggkY~GFG~~ 251 (276)
-+|+|.+||+.
T Consensus 73 ~~g~yr~FG~~ 83 (84)
T 3fbi_A 73 KNQQYRAFGSI 83 (84)
T ss_dssp SSGGGSCSCCC
T ss_pred CCCCeeecCcc
Confidence 47999999974
No 65
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=21.23 E-value=50 Score=28.55 Aligned_cols=28 Identities=25% Similarity=0.523 Sum_probs=21.2
Q ss_pred CccCCCCCCCCce-Eeccccceehhhhhh
Q 023884 18 ICVDCAQKNPQWA-SVSYGVFMCLECSGK 45 (276)
Q Consensus 18 ~C~DCga~~P~Wa-S~~~GiFICl~Csgi 45 (276)
+|-+|+...+.-+ ...-|-.||.+|--|
T Consensus 23 ~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred ECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 7999998544333 467899999999654
No 66
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.45 E-value=53 Score=22.94 Aligned_cols=29 Identities=28% Similarity=0.724 Sum_probs=21.7
Q ss_pred CCCCCccCCCCCCCCceEeccccceehhhhh
Q 023884 14 PGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (276)
Q Consensus 14 p~Nk~C~DCga~~P~WaS~~~GiFICl~Csg 44 (276)
.+-+.|.-||.+.- .--.||+.+|-.|--
T Consensus 16 rg~~rC~vcGr~~g--~iRkfGL~~cR~cfR 44 (56)
T 3j20_P 16 KGARRCIRCGQYGP--IIRIQGLMLCRHCFR 44 (56)
T ss_dssp STTCCCSSSCCSSS--CCCTTTCCCCHHHHH
T ss_pred CCceEeecCCCCcc--cccccCChHHHHHHH
Confidence 35678999998653 234899999998853
Done!