BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023886
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WOO|A Chain A, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|B Chain B, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|C Chain C, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|D Chain D, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|E Chain E, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|F Chain F, Nucleotide-Free Form Of S. Pombe Get3
Length = 329
Score = 278 bits (711), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 138/258 (53%), Positives = 182/258 (70%), Gaps = 10/258 (3%)
Query: 17 GSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76
G++ N+LEQ SLKW+F S L+I +++VR SVL+ISTDPAHNLSDAF
Sbjct: 8 GTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGT 67
Query: 77 RFTKTPTLVNGFSNLYAMEVDP--SVEEETGSTEG------MDSLFSELANAIPGIDEAM 128
+F K V GF NL AME+DP S++E T + + + +LA IPGIDEA+
Sbjct: 68 KFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPGIDEAL 127
Query: 129 SFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188
+FAE+LK +++M++ C++FDTAPTGHTLR L FP+ LEK L K+ L ++FG MINQM
Sbjct: 128 AFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGS 187
Query: 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
+ G++ E L G++E M+ I VNKQFK+PDLTTFVCVCI EFLSLYETER++QEL
Sbjct: 188 IMGVNA--NEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQEL 245
Query: 249 TKFEIDTHNIIINQVLYD 266
T +EIDTHNI++NQ+L D
Sbjct: 246 TSYEIDTHNIVVNQLLLD 263
>pdb|3IBG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|E Chain E, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|F Chain F, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
Length = 348
Score = 271 bits (693), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 140/276 (50%), Positives = 188/276 (68%), Gaps = 16/276 (5%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
E ++++IL Q +L+W+F S L+I LA+VR SVL+ISTDPAHNLSDAF
Sbjct: 14 EPTLQSILSQKTLRWIFVGGKGGVGKTTTSCSLAIQLAKVRKSVLLISTDPAHNLSDAFG 73
Query: 76 QRFTKTPTLVNGFSNLYAMEVDP--SVEEETGSTE----------GMDSLFSELANAIPG 123
Q+F K LV+G+SNL AME+DP S+++ S + GM ++ +LA +IPG
Sbjct: 74 QKFGKEARLVDGYSNLSAMEIDPNGSIQDLLASGDSQGDDPLAGLGMGNMMQDLAFSIPG 133
Query: 124 IDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI 183
+DEAMSFAE+LK V+++ Y IVFDTAPTGHTLR LQFP+ LEK L K+ L ++FG M+
Sbjct: 134 VDEAMSFAEVLKQVKSLSYEVIVFDTAPTGHTLRFLQFPTVLEKALAKLSQLSSQFGPML 193
Query: 184 NQ-MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE 242
N + G+ D LL ++E +++ I VN QFK+PD+TTFVCVCI EFLSLYETE
Sbjct: 194 NSILGARGGLPGGQNIDELLQKMESLRETISEVNTQFKNPDMTTFVCVCIAEFLSLYETE 253
Query: 243 RLVQELTKFEIDTHNIIINQVLYDDEGM---HCNCR 275
R++QELT + IDTH I++NQ+L+ EG CN R
Sbjct: 254 RMIQELTSYGIDTHAIVVNQLLFPKEGSGCEQCNAR 289
>pdb|3IQW|A Chain A, Amppnp Complex Of C. Therm. Get3
pdb|3IQW|B Chain B, Amppnp Complex Of C. Therm. Get3
pdb|3IQX|A Chain A, Adp Complex Of C.Therm. Get3 In Closed Form
pdb|3IQX|B Chain B, Adp Complex Of C.Therm. Get3 In Closed Form
Length = 334
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/267 (50%), Positives = 178/267 (66%), Gaps = 10/267 (3%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75
E ++++IL+Q SL+W+F S L+I LA+VR SVL++STDPAHNLSDAF
Sbjct: 4 EPTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFS 63
Query: 76 QRFTKTPTLVNGFSNLYAMEVDPS------VEEETGSTE---GMDSLFSELANAIPGIDE 126
Q+F K LV GF NLYAME+DP+ + +TG + G + +LA AIPGIDE
Sbjct: 64 QKFGKEARLVEGFDNLYAMEIDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDE 123
Query: 127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
AMSFAE+LK V ++ Y IVFDTAPTGHTLR LQFP+ LEK L K+ L ++G ++N +
Sbjct: 124 AMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKALAKVSQLSGQYGSLLNGI 183
Query: 187 TRLFG-IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLV 245
G + + ++ +L+ ++ I VN QFKD LTTFVCVCIPEFLSLYETER++
Sbjct: 184 LGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMI 243
Query: 246 QELTKFEIDTHNIIINQVLYDDEGMHC 272
QEL + IDTH I++NQ+L+ G C
Sbjct: 244 QELANYGIDTHCIVVNQLLFPKPGSDC 270
>pdb|3IO3|A Chain A, Get3 With Adp From D. Hansenii In Closed Form
Length = 348
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/285 (40%), Positives = 165/285 (57%), Gaps = 31/285 (10%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
E ++ +I++ DSLKW+F SS +++ LA +P+ L+ISTDPAHNLSDA
Sbjct: 6 EPTLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDA 65
Query: 74 FQQRFTKTPTLVNGFSNLYAMEVDPSV----------EEETGSTEGMDSLFSELANAIPG 123
F Q+F K V G NL ME+DP + + + S+ S++ +IPG
Sbjct: 66 FCQKFGKDARKVEGLPNLSCMEIDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIPG 125
Query: 124 IDEAMSFAEMLKLVQ------------TMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDK 171
IDEA+SF E+LK ++ + Y I+FDTAPTGHTLR LQ PSTLEK L K
Sbjct: 126 IDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLSK 185
Query: 172 MMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVC 231
L K G M++ M D + +L ++ + VN+QF +P+LTTF+CVC
Sbjct: 186 FKDLSGKLGPMLSMMGGGQQQD-------IFEKLNEVQKNVSEVNEQFTNPELTTFICVC 238
Query: 232 IPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCRC 276
I EFLSLYETER++QEL + +D ++I++NQ+L+ + H RC
Sbjct: 239 ISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRC 283
>pdb|2WOJ|A Chain A, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|B Chain B, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|C Chain C, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|D Chain D, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|3H84|A Chain A, Crystal Structure Of Get3
pdb|3H84|B Chain B, Crystal Structure Of Get3
pdb|3ZS8|A Chain A, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS8|B Chain B, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS9|A Chain A, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
pdb|3ZS9|B Chain B, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
Length = 354
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 166/290 (57%), Gaps = 36/290 (12%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
E ++ +++ + KW+F S ++I +A +P+ L+ISTDPAHNLSDA
Sbjct: 6 EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74 FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
F ++F K V G +NL ME+DPS GS D L
Sbjct: 66 FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
++L +IPGIDEA+SF E++K ++ + + ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
L+K + NK G M+N +D + G+L +K +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNC-RC 276
VCVCI EFLSLYETERL+QEL +++D ++II+NQ+L+ + NC RC
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRC 288
>pdb|3VLC|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Semi Open
Conformation In Complex With Get1 Cytosolic Domain At
4.5 Angstrom Resolution
Length = 354
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 166/290 (57%), Gaps = 36/290 (12%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
E ++ +++ + KW+F S ++I +A +P+ L+ISTDPAHNLSDA
Sbjct: 6 EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74 FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
F ++F K V G +NL ME+DPS GS D L
Sbjct: 66 FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
++L +IPGIDEA+SF E++K ++ + + ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQDEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
L+K + NK G M+N +D + G+L +K +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNC-RC 276
VCVCI EFLSLYETERL+QEL +++D ++II+NQ+L+ + NC RC
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRC 288
>pdb|3A36|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A36|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3B2E|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|C Chain C, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|D Chain D, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
Length = 362
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 166/290 (57%), Gaps = 36/290 (12%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
E ++ +++ + KW+F S ++I +A +P+ L+ISTDPAHNLSDA
Sbjct: 6 EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74 FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
F ++F K V G +NL ME+DPS GS D L
Sbjct: 66 FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
++L +IPGIDEA+SF E++K ++ + + ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQDEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
L+K + NK G M+N +D + G+L +K +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNC-RC 276
VCVCI EFLSLYETERL+QEL +++D ++II+NQ+L+ + NC RC
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRC 288
>pdb|3SJA|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|E Chain E, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|F Chain F, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|I Chain I, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJC|A Chain A, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|B Chain B, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|E Chain E, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|F Chain F, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJD|A Chain A, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|B Chain B, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|C Chain C, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
Length = 362
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 166/290 (57%), Gaps = 36/290 (12%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
E ++ +++ + KW+F S ++I +A +P+ L+ISTDPAHNLSDA
Sbjct: 6 EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74 FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
F ++F K V G +NL ME+DPS GS D L
Sbjct: 66 FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
++L +IPGIDEA+SF E++K ++ + + ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
L+K + NK G M+N +D + G+L +K +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNC-RC 276
VCVCI EFLSLYETERL+QEL +++D ++II+NQ+L+ + NC RC
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRC 288
>pdb|3IDQ|A Chain A, Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angstrom
Resolution
Length = 369
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 166/290 (57%), Gaps = 36/290 (12%)
Query: 16 EGSVRNILEQDSLKWVFXXXXXXXXXXXCSSILSILLAEVRPS--VLIISTDPAHNLSDA 73
E ++ +++ + KW+F S ++I +A +P+ L+ISTDPAHNLSDA
Sbjct: 6 EPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDA 65
Query: 74 FQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSL-------- 113
F ++F K V G +NL ME+DPS GS D L
Sbjct: 66 FGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGA 125
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLEK 167
++L +IPGIDEA+SF E++K ++ + + ++FDTAPTGHTLR LQ P+TL K
Sbjct: 126 LADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSK 185
Query: 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTF 227
L+K + NK G M+N +D + G+L +K +E + +QF DPDLTTF
Sbjct: 186 LLEKFGEITNKLGPMLNSFMGAGNVD-------ISGKLNELKANVETIRQQFTDPDLTTF 238
Query: 228 VCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNC-RC 276
VCVCI EFLSLYETERL+QEL +++D ++II+NQ+L+ + NC RC
Sbjct: 239 VCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRC 288
>pdb|3UG6|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
Length = 349
Score = 163 bits (413), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 148/281 (52%), Gaps = 25/281 (8%)
Query: 18 SVRNILEQ-----DSLKWVFXXXXXXXXXXXCSSILSILLAEVRPSVLIISTDPAHNLSD 72
S+R I E+ D K++ S+ + LAE V+I+STDPAH+L D
Sbjct: 11 SLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRD 70
Query: 73 AFQQRFTKTPTLVNGFSNLYAMEVDPS-------------VEEETGSTEGMDSLFSELAN 119
F+Q F PT V G+ NLY +E+DP +EE E ++ E+A
Sbjct: 71 IFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQL-EMAA 129
Query: 120 AIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKF 179
PG DE+ +F LK + + ++ ++FDTAPTGHTLR L P ++K + K++ L+ +
Sbjct: 130 LSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQM 189
Query: 180 GGMINQMTRLF---GIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFL 236
G + M +L G D++ D +L LE MK+ I R DP+ T F V IPE +
Sbjct: 190 SGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEM 249
Query: 237 SLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCN-CRC 276
S+ E+ER ++ L K+ I +I+NQ++ +D + C+ CR
Sbjct: 250 SILESERAMKALQKYGIPIDAVIVNQLIPED--VQCDFCRA 288
>pdb|3ZQ6|A Chain A, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|B Chain B, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|C Chain C, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|D Chain D, Adp-Alf4 Complex Of M. Therm. Trc40
Length = 324
Score = 160 bits (406), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 138/246 (56%), Gaps = 17/246 (6%)
Query: 45 SSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSV---- 100
S+ ++ +A L+ISTDPAH+LSD+ ++ TPT + NLYA+E+DP V
Sbjct: 31 SAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTPTKIT--ENLYAVEIDPEVAMEE 88
Query: 101 -----EEETGSTEGM--DSLFSEL--ANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAP 151
+E+ GM D L ++ A+ PGIDEA +F + L+ + T +Y ++FDTAP
Sbjct: 89 YQAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAP 148
Query: 152 TGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG-IDDEFGEDALLGRLEGMKD 210
TGHTLRLL FP ++ + KM+ ++ + G M + + DE ED L +E K
Sbjct: 149 TGHTLRLLSFPEIMDSWVGKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKK 208
Query: 211 VIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGM 270
I + DP+ T+F V IPE +S+YE+ER ++ L K+ I +I+NQVL ++
Sbjct: 209 QINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDC 268
Query: 271 H-CNCR 275
CN R
Sbjct: 269 EFCNAR 274
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 92/237 (38%), Gaps = 34/237 (14%)
Query: 49 SILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTE 108
+I LAE VL++STDPA N+ F Q T + L A+E+DP +
Sbjct: 29 AIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQYRAR 88
Query: 109 GMDSLFSELA-NAIPGIDEAMS---------FAEMLKLVQTMD----YSCIVFDTAPTGH 154
+D + L + + I+E +S F E L+ + I+FDTAPTGH
Sbjct: 89 IVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGH 148
Query: 155 TLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIER 214
T+RLLQ P +D + G M LE ++
Sbjct: 149 TIRLLQLPGAWSSFIDSNPEGASCLGPMAG--------------------LEKQREQYAY 188
Query: 215 VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMH 271
+ DP T V V + +L E R EL + ++IN VL E +
Sbjct: 189 AVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAAN 245
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 85/230 (36%), Gaps = 53/230 (23%)
Query: 45 SSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET 104
++ +++ LA++ V + ++DPA +LS TL +NL +DP E E
Sbjct: 344 AAAIAVRLADMGFDVHLTTSDPAAHLSM----------TLNGSLNNLQVSRIDPHEETER 393
Query: 105 GSTEGMDSLFSELANA----------IPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGH 154
+++ EL A P +E F ++++ +V DTAPTGH
Sbjct: 394 YRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGH 453
Query: 155 TLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIER 214
TL LL + + K M K F M L
Sbjct: 454 TLLLLDATGAYHREIAKKMGEKGHF---TTPMMLL------------------------- 485
Query: 215 VNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL 264
+DP+ T + V +PE + E L +L + I IIN L
Sbjct: 486 -----QDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSL 530
>pdb|3IGF|A Chain A, Crystal Structure Of The All4481 Protein From Nostoc Sp.
Pcc 7120, Northeast Structural Genomics Consortium
Target Nsr300
pdb|3IGF|B Chain B, Crystal Structure Of The All4481 Protein From Nostoc Sp.
Pcc 7120, Northeast Structural Genomics Consortium
Target Nsr300
Length = 374
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 121 IPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSL 175
+PG D A++ + + + Y IV+D TLR L P +L + + L
Sbjct: 104 LPGXDSALALNAIREYDASGKYDTIVYDGTGDAFTLRXLGLPESLSWYVRRFRQL 158
>pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
Length = 544
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 51 LLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPT---LVNGFSNLYA 93
++AE RP +LI++ D +D FQ F+ P LV FS +
Sbjct: 272 IVAEQRPDLLILTDDVYGTFADEFQSLFSVCPRNTLLVYSFSKYFG 317
>pdb|3FDD|A Chain A, The Crystal Structure Of The Pseudomonas Dacunhae
Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric
Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme
Length = 533
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 51 LLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPT---LVNGFSNLYA 93
++AE RP ++I++ D +D FQ F P LV FS +
Sbjct: 273 IVAEHRPDLMILTDDVYGTFADGFQSLFAICPANTLLVYSFSKYFG 318
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 210 DVIERVNKQFKDPDLTTFVCVCIPEFLSLYETER--LVQEL 248
D I+R+ K+FK DL + + EF+SL E ++ LVQ +
Sbjct: 4 DEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRV 44
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 210 DVIERVNKQFKDPDLTTFVCVCIPEFLSLYETER--LVQEL 248
D I+R+ K+FK DL + + EF+SL E ++ LVQ +
Sbjct: 3 DEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRV 43
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 210 DVIERVNKQFKDPDLTTFVCVCIPEFLSLYETER--LVQEL 248
D I+R+ K+FK DL + + EF+SL E ++ LVQ +
Sbjct: 18 DEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRV 58
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 210 DVIERVNKQFKDPDLTTFVCVCIPEFLSLYETER--LVQEL 248
D I+R+ K+FK DL + + EF+SL E ++ LVQ +
Sbjct: 17 DEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRV 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,146,719
Number of Sequences: 62578
Number of extensions: 276347
Number of successful extensions: 583
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 25
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)