Query 023886
Match_columns 276
No_of_seqs 237 out of 1800
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:22:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2825 Putative arsenite-tran 100.0 4.3E-44 9.3E-49 295.1 21.3 258 15-273 6-273 (323)
2 PF02374 ArsA_ATPase: Anion-tr 100.0 4.5E-41 9.8E-46 296.3 20.8 241 28-270 1-253 (305)
3 COG0003 ArsA Predicted ATPase 100.0 1.9E-36 4.1E-41 266.2 24.2 236 28-267 2-250 (322)
4 cd00550 ArsA_ATPase Oxyanion-t 100.0 4.2E-32 9.1E-37 234.2 19.1 192 29-268 1-204 (254)
5 TIGR00345 arsA arsenite-activa 100.0 1.9E-28 4.1E-33 214.6 23.9 218 44-267 1-232 (284)
6 COG0489 Mrp ATPases involved i 99.9 4E-25 8.6E-30 191.3 18.8 190 8-264 35-230 (265)
7 KOG3022 Predicted ATPase, nucl 99.9 5.8E-26 1.3E-30 190.8 12.6 183 23-273 43-226 (300)
8 TIGR03029 EpsG chain length de 99.9 4.4E-26 9.5E-31 199.2 10.7 186 7-262 82-274 (274)
9 PRK11670 antiporter inner memb 99.9 2.9E-25 6.3E-30 200.6 15.5 173 26-264 106-280 (369)
10 cd02037 MRP-like MRP (Multiple 99.9 6.2E-25 1.3E-29 178.5 15.8 133 30-266 2-134 (169)
11 PRK13869 plasmid-partitioning 99.9 1.5E-24 3.2E-29 198.6 16.2 133 28-161 122-271 (405)
12 TIGR01007 eps_fam capsular exo 99.9 8.7E-25 1.9E-29 182.9 13.5 192 10-267 1-194 (204)
13 CHL00175 minD septum-site dete 99.9 1.1E-24 2.3E-29 191.1 13.9 169 28-266 16-191 (281)
14 cd02035 ArsA ArsA ATPase funct 99.9 2.2E-24 4.8E-29 182.1 15.1 177 30-268 1-185 (217)
15 PHA02519 plasmid partition pro 99.9 6.6E-25 1.4E-29 199.4 11.1 209 27-248 106-348 (387)
16 COG2894 MinD Septum formation 99.9 8.2E-25 1.8E-29 178.1 9.7 174 28-266 3-185 (272)
17 TIGR03018 pepcterm_TyrKin exop 99.9 2.3E-24 5E-29 180.8 12.7 188 7-261 10-207 (207)
18 TIGR01969 minD_arch cell divis 99.9 1.5E-24 3.2E-29 186.8 10.9 167 29-266 2-173 (251)
19 PRK13705 plasmid-partitioning 99.9 3.9E-24 8.5E-29 194.6 12.5 214 26-248 105-348 (388)
20 COG1192 Soj ATPases involved i 99.9 8.6E-24 1.9E-28 183.2 13.2 204 27-244 2-226 (259)
21 TIGR01005 eps_transp_fam exopo 99.9 5.2E-24 1.1E-28 209.9 11.3 195 8-268 526-723 (754)
22 TIGR01968 minD_bact septum sit 99.9 2.5E-23 5.4E-28 180.1 14.1 173 28-266 2-176 (261)
23 PRK13232 nifH nitrogenase redu 99.9 1.6E-23 3.5E-28 182.9 12.9 171 28-263 2-184 (273)
24 cd02117 NifH_like This family 99.9 2.9E-23 6.2E-28 174.8 13.5 173 29-266 2-188 (212)
25 TIGR03371 cellulose_yhjQ cellu 99.9 5.7E-23 1.2E-27 176.5 15.1 128 28-160 2-133 (246)
26 COG0455 flhG Antiactivator of 99.9 2E-23 4.3E-28 179.6 12.1 168 28-270 3-183 (262)
27 TIGR03453 partition_RepA plasm 99.9 2.1E-23 4.6E-28 190.6 12.4 134 27-161 104-254 (387)
28 PHA02518 ParA-like protein; Pr 99.9 9.6E-23 2.1E-27 171.0 14.4 94 29-160 2-95 (211)
29 PRK11519 tyrosine kinase; Prov 99.9 2.1E-23 4.5E-28 203.9 11.9 193 8-266 506-701 (719)
30 PRK10037 cell division protein 99.9 1E-22 2.2E-27 175.6 13.8 129 28-160 2-136 (250)
31 PRK13849 putative crown gall t 99.9 1.6E-22 3.5E-27 171.8 14.8 101 28-160 2-102 (231)
32 PRK09841 cryptic autophosphory 99.9 3E-23 6.5E-28 203.0 11.0 194 8-267 511-707 (726)
33 TIGR01281 DPOR_bchL light-inde 99.9 5.1E-23 1.1E-27 179.3 10.7 47 29-76 2-48 (268)
34 PRK10818 cell division inhibit 99.9 4.1E-22 8.9E-27 173.7 15.5 174 28-266 3-186 (270)
35 PRK13235 nifH nitrogenase redu 99.9 1.1E-22 2.4E-27 177.7 11.7 47 28-75 2-48 (274)
36 cd02040 NifH NifH gene encodes 99.9 1.2E-22 2.7E-27 176.8 11.7 48 28-76 2-49 (270)
37 cd02032 Bchl_like This family 99.9 1.5E-22 3.2E-27 176.3 11.9 47 29-76 2-48 (267)
38 PRK13233 nifH nitrogenase redu 99.9 1.1E-22 2.4E-27 177.8 10.7 169 28-263 3-187 (275)
39 CHL00072 chlL photochlorophyll 99.9 4.4E-22 9.6E-27 174.8 13.9 46 29-75 2-47 (290)
40 PRK13185 chlL protochlorophyll 99.9 1E-21 2.2E-26 171.3 15.2 48 28-76 3-50 (270)
41 PRK13230 nitrogenase reductase 99.9 3.2E-22 6.9E-27 175.3 12.0 48 28-76 2-49 (279)
42 cd03110 Fer4_NifH_child This p 99.9 1.8E-21 3.9E-26 159.5 15.1 155 29-267 1-157 (179)
43 cd02036 MinD Bacterial cell di 99.9 1.1E-21 2.4E-26 160.2 13.1 126 30-267 2-128 (179)
44 PF01656 CbiA: CobQ/CobB/MinD/ 99.9 1.1E-21 2.5E-26 162.2 12.1 158 30-266 1-161 (195)
45 TIGR01287 nifH nitrogenase iro 99.9 1.1E-21 2.4E-26 171.5 11.6 45 30-75 3-47 (275)
46 PRK13234 nifH nitrogenase redu 99.9 1.2E-21 2.6E-26 172.8 10.7 47 28-75 5-51 (295)
47 PRK13236 nitrogenase reductase 99.9 2.2E-21 4.7E-26 171.2 12.1 49 27-75 5-53 (296)
48 TIGR03815 CpaE_hom_Actino heli 99.9 1.5E-21 3.1E-26 174.5 11.0 172 26-263 92-265 (322)
49 PRK13231 nitrogenase reductase 99.9 1.8E-21 3.8E-26 169.2 10.5 46 28-75 3-48 (264)
50 TIGR02016 BchX chlorophyllide 99.8 8E-21 1.7E-25 167.3 11.7 45 29-74 2-46 (296)
51 PF06564 YhjQ: YhjQ protein; 99.8 1.9E-19 4.2E-24 152.2 12.1 53 28-80 2-54 (243)
52 cd03111 CpaE_like This protein 99.8 3.6E-19 7.9E-24 133.4 11.8 101 30-262 2-106 (106)
53 cd02033 BchX Chlorophyllide re 99.8 7.9E-19 1.7E-23 155.7 12.7 51 27-77 30-81 (329)
54 COG3640 CooC CO dehydrogenase 99.8 3.7E-18 7.9E-23 141.1 14.3 172 31-266 3-198 (255)
55 cd02038 FleN-like FleN is a me 99.8 8E-18 1.7E-22 132.3 11.0 110 30-268 2-112 (139)
56 PF09140 MipZ: ATPase MipZ; I 99.8 9.8E-19 2.1E-23 146.5 5.7 115 29-160 2-117 (261)
57 cd02042 ParA ParA and ParB of 99.7 1.9E-17 4.1E-22 123.5 10.9 38 30-67 2-39 (104)
58 PF07015 VirC1: VirC1 protein; 99.7 1.3E-16 2.9E-21 133.1 16.1 102 28-161 2-103 (231)
59 COG1149 MinD superfamily P-loo 99.7 8.4E-17 1.8E-21 135.8 9.7 51 27-78 1-52 (284)
60 PF00142 Fer4_NifH: 4Fe-4S iro 99.6 9.2E-15 2E-19 123.8 11.0 171 31-263 3-185 (273)
61 COG1348 NifH Nitrogenase subun 99.6 2.5E-14 5.3E-19 118.0 12.3 157 31-263 4-186 (278)
62 PF13614 AAA_31: AAA domain; P 99.6 1.4E-14 3.1E-19 115.8 8.6 50 29-78 2-52 (157)
63 TIGR00064 ftsY signal recognit 99.5 5.2E-13 1.1E-17 116.2 17.0 42 28-69 72-113 (272)
64 cd03115 SRP The signal recogni 99.5 6E-12 1.3E-16 102.4 18.0 40 30-69 2-41 (173)
65 cd03114 ArgK-like The function 99.5 1.5E-12 3.3E-17 103.2 13.6 39 31-69 2-40 (148)
66 cd02034 CooC The accessory pro 99.5 4.3E-13 9.2E-18 101.9 9.8 100 31-156 2-101 (116)
67 PRK10867 signal recognition pa 99.4 4.3E-12 9.2E-17 116.6 16.1 44 27-70 99-143 (433)
68 TIGR00347 bioD dethiobiotin sy 99.4 1.9E-12 4.1E-17 104.6 12.0 156 32-261 2-166 (166)
69 PRK13886 conjugal transfer pro 99.4 1.1E-11 2.4E-16 105.1 16.3 42 28-69 3-44 (241)
70 TIGR00959 ffh signal recogniti 99.4 7.9E-12 1.7E-16 114.8 15.0 44 27-70 98-142 (428)
71 TIGR01425 SRP54_euk signal rec 99.4 9.5E-12 2.1E-16 113.8 15.1 42 28-69 100-141 (429)
72 COG4963 CpaE Flp pilus assembl 99.4 3.1E-12 6.6E-17 113.3 11.3 178 25-266 102-284 (366)
73 PRK10416 signal recognition pa 99.4 3.6E-11 7.8E-16 106.8 18.0 42 28-69 114-155 (318)
74 PRK00771 signal recognition pa 99.3 4.3E-11 9.4E-16 110.2 15.9 43 27-69 94-136 (437)
75 PRK13768 GTPase; Provisional 99.3 3.1E-11 6.8E-16 104.2 13.1 42 28-69 2-43 (253)
76 cd01983 Fer4_NifH The Fer4_Nif 99.3 3.1E-11 6.8E-16 87.8 10.4 33 31-63 2-34 (99)
77 PRK11889 flhF flagellar biosyn 99.3 1.2E-10 2.6E-15 104.7 14.5 41 28-68 241-281 (436)
78 PRK12726 flagellar biosynthesi 99.2 3.8E-10 8.3E-15 101.2 15.9 42 28-69 206-247 (407)
79 PRK14974 cell division protein 99.1 9.8E-10 2.1E-14 98.1 13.9 42 28-69 140-181 (336)
80 PRK00090 bioD dithiobiotin syn 99.1 2E-09 4.3E-14 91.1 14.7 41 226-266 135-175 (222)
81 PRK12724 flagellar biosynthesi 99.1 1.8E-09 3.9E-14 98.3 14.3 44 28-71 223-267 (432)
82 PRK05703 flhF flagellar biosyn 99.1 1.4E-09 3E-14 100.4 13.2 41 29-69 222-264 (424)
83 PF00448 SRP54: SRP54-type pro 99.1 2.2E-09 4.7E-14 89.1 12.0 42 28-69 1-42 (196)
84 PF10609 ParA: ParA/MinD ATPas 99.0 2.5E-10 5.4E-15 79.8 4.6 41 224-264 25-65 (81)
85 COG0541 Ffh Signal recognition 99.0 5.4E-09 1.2E-13 94.3 14.0 98 25-154 97-195 (451)
86 PRK12727 flagellar biosynthesi 99.0 6.7E-09 1.5E-13 96.8 14.7 41 29-69 351-393 (559)
87 TIGR00750 lao LAO/AO transport 99.0 1.4E-08 3.1E-13 89.9 16.1 45 27-71 33-77 (300)
88 PRK12723 flagellar biosynthesi 98.9 2.2E-08 4.9E-13 91.0 13.7 42 28-69 174-219 (388)
89 TIGR03499 FlhF flagellar biosy 98.9 7.4E-09 1.6E-13 90.8 9.1 42 28-69 194-237 (282)
90 PRK06731 flhF flagellar biosyn 98.8 8.7E-08 1.9E-12 83.2 13.2 40 29-68 76-115 (270)
91 COG0552 FtsY Signal recognitio 98.8 9.4E-08 2E-12 83.8 12.8 99 26-156 137-236 (340)
92 PRK01077 cobyrinic acid a,c-di 98.8 1.8E-07 3.8E-12 87.4 14.3 40 28-67 4-43 (451)
93 cd03109 DTBS Dethiobiotin synt 98.8 2E-07 4.3E-12 72.7 12.3 41 227-267 71-111 (134)
94 KOG0780 Signal recognition par 98.8 1.9E-07 4.1E-12 83.0 13.2 95 26-152 99-194 (483)
95 COG0132 BioD Dethiobiotin synt 98.7 3.7E-07 8E-12 76.6 14.1 43 227-269 139-181 (223)
96 KOG1534 Putative transcription 98.6 1.8E-07 3.9E-12 76.7 9.1 112 31-161 6-117 (273)
97 PRK14723 flhF flagellar biosyn 98.6 1.1E-06 2.3E-11 85.8 15.1 41 28-68 185-227 (767)
98 PRK09435 membrane ATPase/prote 98.6 3.5E-07 7.6E-12 81.6 10.7 45 26-70 54-98 (332)
99 COG1703 ArgK Putative periplas 98.6 5.9E-07 1.3E-11 77.6 11.2 113 19-154 41-156 (323)
100 PRK14493 putative bifunctional 98.6 3.4E-07 7.3E-12 79.8 9.5 39 29-68 2-40 (274)
101 PRK05632 phosphate acetyltrans 98.5 2.4E-06 5.3E-11 83.7 14.6 37 29-65 4-40 (684)
102 PRK14722 flhF flagellar biosyn 98.5 4.7E-06 1E-10 75.5 15.1 41 28-68 137-179 (374)
103 PRK12374 putative dithiobiotin 98.5 6.3E-06 1.4E-10 70.2 14.2 41 226-266 137-177 (231)
104 KOG1533 Predicted GTPase [Gene 98.4 5.6E-07 1.2E-11 75.0 7.0 106 32-157 6-112 (290)
105 PF13500 AAA_26: AAA domain; P 98.4 3.1E-06 6.8E-11 70.3 11.3 41 226-266 131-171 (199)
106 PF03308 ArgK: ArgK protein; 98.4 1E-06 2.3E-11 75.0 8.4 113 19-154 19-134 (266)
107 PF03029 ATP_bind_1: Conserved 98.4 3.7E-07 8E-12 78.0 5.7 36 34-69 2-37 (238)
108 PRK06995 flhF flagellar biosyn 98.4 1.1E-05 2.3E-10 75.5 14.4 41 28-68 256-298 (484)
109 COG1419 FlhF Flagellar GTP-bin 98.4 5.1E-06 1.1E-10 75.0 11.8 41 27-67 202-244 (407)
110 KOG0781 Signal recognition par 98.4 8E-06 1.7E-10 74.5 12.6 106 25-156 375-481 (587)
111 PRK00784 cobyric acid synthase 98.2 3E-05 6.5E-10 73.3 13.7 36 28-63 3-38 (488)
112 COG1341 Predicted GTPase or GT 98.2 9.8E-06 2.1E-10 72.9 9.2 38 30-67 75-112 (398)
113 cd01124 KaiC KaiC is a circadi 98.2 9.8E-06 2.1E-10 66.3 8.2 37 31-67 2-38 (187)
114 PRK09361 radB DNA repair and r 98.1 1.7E-05 3.6E-10 67.2 9.4 48 18-65 11-60 (225)
115 cd01394 radB RadB. The archaea 98.1 1.8E-05 3.8E-10 66.7 9.2 50 19-68 8-59 (218)
116 TIGR00379 cobB cobyrinic acid 98.1 7.8E-05 1.7E-09 69.7 13.7 35 30-64 2-36 (449)
117 TIGR00313 cobQ cobyric acid sy 98.1 0.00012 2.5E-09 69.0 14.7 34 31-64 2-35 (475)
118 TIGR02237 recomb_radB DNA repa 98.0 3.4E-05 7.3E-10 64.5 9.5 40 27-66 11-50 (209)
119 PRK08533 flagellar accessory p 98.0 4.9E-05 1.1E-09 64.7 9.5 40 28-67 24-63 (230)
120 COG1797 CobB Cobyrinic acid a, 98.0 0.00013 2.9E-09 66.3 12.4 34 29-62 2-35 (451)
121 PRK06067 flagellar accessory p 98.0 5.7E-05 1.2E-09 64.4 9.4 49 19-67 14-64 (234)
122 PRK13505 formate--tetrahydrofo 97.9 1.1E-05 2.5E-10 75.3 5.3 69 8-78 30-107 (557)
123 cd01120 RecA-like_NTPases RecA 97.9 8.6E-05 1.9E-09 58.7 9.2 39 31-69 2-40 (165)
124 KOG1532 GTPase XAB1, interacts 97.9 7.3E-06 1.6E-10 70.0 3.0 40 28-67 19-58 (366)
125 TIGR02012 tigrfam_recA protein 97.9 3.4E-05 7.5E-10 68.5 7.1 50 18-67 42-94 (321)
126 PRK06278 cobyrinic acid a,c-di 97.9 0.0002 4.3E-09 67.1 11.8 31 25-55 236-266 (476)
127 cd00983 recA RecA is a bacter 97.8 4.8E-05 1.1E-09 67.7 6.9 50 18-67 42-94 (325)
128 TIGR03878 thermo_KaiC_2 KaiC d 97.8 0.00012 2.6E-09 63.5 9.2 40 27-66 35-74 (259)
129 cd01393 recA_like RecA is a b 97.8 0.00015 3.3E-09 61.2 8.8 51 19-69 8-66 (226)
130 cd00477 FTHFS Formyltetrahydro 97.7 4.7E-05 1E-09 70.5 5.5 50 28-79 39-91 (524)
131 TIGR00176 mobB molybdopterin-g 97.7 0.00027 5.8E-09 56.4 9.0 36 31-66 2-37 (155)
132 PRK00889 adenylylsulfate kinas 97.7 6.9E-05 1.5E-09 60.8 5.7 40 28-67 4-43 (175)
133 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00014 3E-09 61.8 7.9 52 19-70 8-67 (235)
134 COG0529 CysC Adenylylsulfate k 97.7 5.6E-05 1.2E-09 60.7 4.8 52 25-76 20-72 (197)
135 PF01583 APS_kinase: Adenylyls 97.7 6.9E-05 1.5E-09 59.6 5.1 38 29-66 3-40 (156)
136 TIGR02655 circ_KaiC circadian 97.7 0.00022 4.7E-09 67.4 9.1 50 18-67 251-302 (484)
137 PRK09354 recA recombinase A; P 97.7 0.00014 3E-09 65.4 7.3 52 18-69 47-101 (349)
138 PRK07667 uridine kinase; Provi 97.7 0.0001 2.2E-09 61.1 6.0 39 28-66 17-55 (193)
139 PRK14721 flhF flagellar biosyn 97.6 0.0023 4.9E-08 59.1 14.8 40 28-67 191-232 (420)
140 TIGR01618 phage_P_loop phage n 97.6 0.00021 4.5E-09 60.3 7.4 32 29-67 13-44 (220)
141 PRK13896 cobyrinic acid a,c-di 97.6 0.0018 3.9E-08 60.1 14.0 38 29-66 3-40 (433)
142 PRK10751 molybdopterin-guanine 97.6 0.00051 1.1E-08 55.7 9.0 39 27-65 5-43 (173)
143 PF06745 KaiC: KaiC; InterPro 97.6 0.00029 6.3E-09 59.6 7.9 50 19-68 8-60 (226)
144 PRK04296 thymidine kinase; Pro 97.6 0.00041 9E-09 57.2 8.5 34 29-62 3-36 (190)
145 PRK13506 formate--tetrahydrofo 97.6 0.00011 2.4E-09 68.7 5.2 51 27-79 54-107 (578)
146 smart00382 AAA ATPases associa 97.5 0.00038 8.2E-09 53.0 7.5 41 29-69 3-43 (148)
147 COG1066 Sms Predicted ATP-depe 97.5 0.00053 1.2E-08 62.1 9.2 110 18-165 81-192 (456)
148 PRK05973 replicative DNA helic 97.5 0.00014 3.1E-09 62.0 5.1 41 27-67 63-103 (237)
149 TIGR02238 recomb_DMC1 meiotic 97.5 0.00056 1.2E-08 60.9 8.8 52 18-69 84-143 (313)
150 cd01125 repA Hexameric Replica 97.5 0.00052 1.1E-08 58.7 8.3 38 30-67 3-52 (239)
151 PRK08233 hypothetical protein; 97.5 0.00034 7.3E-09 56.8 6.7 38 29-68 4-41 (182)
152 cd01121 Sms Sms (bacterial rad 97.5 0.00044 9.6E-09 63.0 7.8 48 19-66 71-120 (372)
153 PRK06696 uridine kinase; Valid 97.5 0.00024 5.3E-09 60.1 5.7 43 25-67 19-61 (223)
154 PRK07952 DNA replication prote 97.5 0.00018 3.8E-09 61.8 4.8 36 29-64 100-135 (244)
155 PRK04301 radA DNA repair and r 97.4 0.00075 1.6E-08 60.3 8.8 54 17-70 89-150 (317)
156 PRK03846 adenylylsulfate kinas 97.4 0.00027 5.9E-09 58.6 5.6 42 27-68 23-64 (198)
157 TIGR00416 sms DNA repair prote 97.4 0.00051 1.1E-08 64.3 7.4 41 26-66 92-132 (454)
158 PRK04328 hypothetical protein; 97.4 0.0011 2.5E-08 57.0 9.1 50 18-67 11-62 (249)
159 PRK11823 DNA repair protein Ra 97.4 0.00084 1.8E-08 62.7 8.8 48 19-66 69-118 (446)
160 PHA02542 41 41 helicase; Provi 97.4 0.00027 5.9E-09 66.3 5.5 51 18-68 178-230 (473)
161 PF13207 AAA_17: AAA domain; P 97.4 0.00024 5.2E-09 53.7 4.2 28 30-60 1-28 (121)
162 PF13479 AAA_24: AAA domain 97.4 0.00075 1.6E-08 56.7 7.5 31 30-68 5-35 (213)
163 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00023 5E-09 61.2 4.4 36 31-66 2-37 (249)
164 cd02028 UMPK_like Uridine mono 97.3 0.00031 6.6E-09 57.5 4.7 37 30-66 1-37 (179)
165 TIGR00708 cobA cob(I)alamin ad 97.3 0.0021 4.6E-08 52.0 9.3 35 31-66 9-43 (173)
166 cd02027 APSK Adenosine 5'-phos 97.3 0.00032 7E-09 55.5 4.5 38 31-68 2-39 (149)
167 TIGR02236 recomb_radA DNA repa 97.3 0.0011 2.5E-08 58.8 8.4 53 17-69 82-142 (310)
168 PF13245 AAA_19: Part of AAA d 97.3 0.00046 1E-08 48.1 4.7 38 28-65 10-51 (76)
169 PRK09302 circadian clock prote 97.3 0.0016 3.5E-08 62.0 9.9 50 18-67 19-71 (509)
170 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.002 4.4E-08 51.4 8.8 30 35-64 9-38 (159)
171 cd03113 CTGs CTP synthetase (C 97.3 0.01 2.3E-07 50.3 13.2 42 31-72 4-46 (255)
172 PRK09519 recA DNA recombinatio 97.3 0.0013 2.9E-08 64.8 8.9 52 18-69 47-101 (790)
173 PLN03187 meiotic recombination 97.2 0.002 4.3E-08 58.0 9.2 51 19-69 115-173 (344)
174 TIGR00073 hypB hydrogenase acc 97.2 0.0042 9E-08 51.9 10.4 48 21-69 15-62 (207)
175 PTZ00035 Rad51 protein; Provis 97.2 0.0019 4.1E-08 58.2 8.8 50 18-67 106-163 (337)
176 PRK09302 circadian clock prote 97.2 0.0018 3.8E-08 61.7 8.9 50 18-67 261-312 (509)
177 PF13481 AAA_25: AAA domain; P 97.2 0.00056 1.2E-08 56.2 4.7 40 29-68 33-82 (193)
178 cd00984 DnaB_C DnaB helicase C 97.2 0.0007 1.5E-08 57.8 5.5 41 27-67 12-53 (242)
179 PHA00729 NTP-binding motif con 97.2 0.00075 1.6E-08 56.9 5.5 39 28-66 17-68 (226)
180 PF03205 MobB: Molybdopterin g 97.2 0.00081 1.8E-08 52.7 5.4 36 30-66 3-39 (140)
181 PRK06762 hypothetical protein; 97.2 0.00055 1.2E-08 54.9 4.5 36 28-66 2-37 (166)
182 cd01122 GP4d_helicase GP4d_hel 97.2 0.00064 1.4E-08 59.1 5.1 41 27-67 29-70 (271)
183 PF09848 DUF2075: Uncharacteri 97.1 0.0012 2.5E-08 59.9 6.9 38 29-66 2-41 (352)
184 COG1763 MobB Molybdopterin-gua 97.1 0.0029 6.2E-08 50.7 8.0 40 28-67 2-41 (161)
185 PRK14494 putative molybdopteri 97.1 0.0014 3E-08 55.6 6.5 36 29-64 2-37 (229)
186 PLN03186 DNA repair protein RA 97.1 0.0033 7.1E-08 56.7 9.1 52 18-69 111-170 (342)
187 COG0467 RAD55 RecA-superfamily 97.1 0.0011 2.4E-08 57.4 6.0 49 19-67 12-62 (260)
188 COG1484 DnaC DNA replication p 97.1 0.0008 1.7E-08 58.1 4.9 34 31-64 108-141 (254)
189 PRK05986 cob(I)alamin adenolsy 97.1 0.0052 1.1E-07 50.5 9.3 38 30-67 24-61 (191)
190 PF00154 RecA: recA bacterial 97.1 0.0084 1.8E-07 53.4 11.2 50 28-77 53-104 (322)
191 PRK05541 adenylylsulfate kinas 97.0 0.0012 2.6E-08 53.6 5.2 39 28-66 7-45 (176)
192 TIGR00455 apsK adenylylsulfate 97.0 0.0015 3.3E-08 53.4 5.7 41 26-66 16-56 (184)
193 COG4088 Predicted nucleotide k 97.0 0.00066 1.4E-08 56.1 3.4 39 29-67 2-40 (261)
194 PRK14495 putative molybdopteri 97.0 0.0033 7.3E-08 57.9 8.3 36 29-64 2-37 (452)
195 PF01695 IstB_IS21: IstB-like 97.0 0.0011 2.3E-08 54.2 4.6 35 30-64 49-83 (178)
196 TIGR02239 recomb_RAD51 DNA rep 97.0 0.0046 1E-07 55.2 8.8 52 18-69 84-143 (316)
197 TIGR03575 selen_PSTK_euk L-ser 96.9 0.00099 2.1E-08 59.8 4.5 36 31-66 2-38 (340)
198 KOG0635 Adenosine 5'-phosphosu 96.9 0.0018 3.9E-08 50.8 5.2 57 20-77 24-81 (207)
199 cd03116 MobB Molybdenum is an 96.9 0.0022 4.8E-08 51.4 5.9 39 29-67 2-40 (159)
200 PRK06526 transposase; Provisio 96.9 0.00065 1.4E-08 58.7 3.0 35 30-64 100-134 (254)
201 COG2874 FlaH Predicted ATPases 96.9 0.1 2.2E-06 43.6 15.5 41 26-66 26-66 (235)
202 PRK10463 hydrogenase nickel in 96.9 0.0048 1E-07 54.1 8.2 49 19-68 95-143 (290)
203 cd02029 PRK_like Phosphoribulo 96.9 0.0015 3.3E-08 56.4 4.9 39 31-69 2-40 (277)
204 cd02019 NK Nucleoside/nucleoti 96.9 0.0019 4.1E-08 44.0 4.5 32 31-64 2-33 (69)
205 COG0468 RecA RecA/RadA recombi 96.9 0.027 5.8E-07 49.2 12.6 46 28-73 60-105 (279)
206 PRK05480 uridine/cytidine kina 96.9 0.0022 4.7E-08 53.6 5.5 39 27-67 5-43 (209)
207 PRK05439 pantothenate kinase; 96.9 0.0023 5E-08 56.8 5.9 42 26-67 84-127 (311)
208 PF03796 DnaB_C: DnaB-like hel 96.8 0.0018 3.8E-08 56.1 5.1 50 19-68 9-60 (259)
209 cd00009 AAA The AAA+ (ATPases 96.8 0.0016 3.5E-08 49.9 4.4 47 22-68 13-59 (151)
210 TIGR03420 DnaA_homol_Hda DnaA 96.8 0.0019 4.1E-08 54.4 5.1 49 18-66 28-76 (226)
211 PRK09270 nucleoside triphospha 96.8 0.0016 3.4E-08 55.3 4.6 58 10-67 14-73 (229)
212 PRK15453 phosphoribulokinase; 96.8 0.0022 4.9E-08 55.8 5.5 42 28-69 5-46 (290)
213 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.0025 5.4E-08 53.9 5.6 49 19-67 9-59 (229)
214 PRK00089 era GTPase Era; Revie 96.8 0.016 3.5E-07 50.9 11.0 32 30-67 7-38 (292)
215 TIGR03880 KaiC_arch_3 KaiC dom 96.8 0.0027 5.8E-08 53.6 5.7 49 19-67 5-55 (224)
216 PRK12377 putative replication 96.8 0.002 4.3E-08 55.4 5.0 37 29-65 102-138 (248)
217 cd04170 EF-G_bact Elongation f 96.8 0.012 2.6E-07 51.1 9.9 41 225-266 89-129 (268)
218 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.0026 5.7E-08 54.3 5.6 49 19-67 10-60 (237)
219 cd04167 Snu114p Snu114p subfam 96.8 0.0065 1.4E-07 50.9 7.9 27 31-57 3-29 (213)
220 COG1618 Predicted nucleotide k 96.8 0.0022 4.7E-08 51.0 4.6 32 31-62 8-39 (179)
221 TIGR03600 phage_DnaB phage rep 96.8 0.0022 4.7E-08 59.6 5.4 50 18-67 183-234 (421)
222 PF08433 KTI12: Chromatin asso 96.7 0.002 4.4E-08 56.1 4.6 37 29-65 2-38 (270)
223 PRK08084 DNA replication initi 96.7 0.0017 3.7E-08 55.4 4.1 48 19-66 36-83 (235)
224 PF00485 PRK: Phosphoribulokin 96.7 0.0021 4.5E-08 53.1 4.4 37 30-66 1-41 (194)
225 cd04163 Era Era subfamily. Er 96.7 0.038 8.2E-07 43.1 11.5 28 30-63 5-32 (168)
226 PF08423 Rad51: Rad51; InterP 96.7 0.007 1.5E-07 52.4 7.6 58 18-75 26-91 (256)
227 PRK05595 replicative DNA helic 96.6 0.0029 6.3E-08 59.2 5.3 40 28-67 201-241 (444)
228 PRK14489 putative bifunctional 96.6 0.014 3E-07 53.2 9.5 39 28-66 205-243 (366)
229 PRK08506 replicative DNA helic 96.6 0.0033 7.1E-08 59.2 5.4 41 27-67 191-231 (472)
230 COG4240 Predicted kinase [Gene 96.6 0.0037 8E-08 52.5 5.0 41 25-65 47-88 (300)
231 PRK09183 transposase/IS protei 96.6 0.0031 6.7E-08 54.7 4.8 36 29-64 103-138 (259)
232 TIGR02655 circ_KaiC circadian 96.6 0.011 2.4E-07 55.9 8.8 48 19-66 10-60 (484)
233 cd02025 PanK Pantothenate kina 96.6 0.0034 7.4E-08 53.1 4.8 37 31-67 2-40 (220)
234 PF13173 AAA_14: AAA domain 96.5 0.0036 7.9E-08 48.0 4.3 40 28-68 2-41 (128)
235 PF13086 AAA_11: AAA domain; P 96.5 0.0032 7E-08 52.7 4.2 36 30-65 19-62 (236)
236 cd02023 UMPK Uridine monophosp 96.5 0.0038 8.2E-08 51.6 4.5 35 30-66 1-35 (198)
237 PRK06749 replicative DNA helic 96.5 0.0038 8.3E-08 58.0 5.0 41 27-67 185-225 (428)
238 PRK06835 DNA replication prote 96.5 0.0034 7.4E-08 56.3 4.4 37 29-65 184-220 (329)
239 PRK08939 primosomal protein Dn 96.5 0.0042 9.1E-08 55.2 4.9 37 28-64 156-192 (306)
240 PRK08760 replicative DNA helic 96.5 0.004 8.8E-08 58.7 5.0 42 27-68 228-270 (476)
241 TIGR00041 DTMP_kinase thymidyl 96.5 0.0087 1.9E-07 49.2 6.5 36 29-64 4-39 (195)
242 TIGR00665 DnaB replicative DNA 96.5 0.0049 1.1E-07 57.4 5.6 41 27-67 194-235 (434)
243 PRK07414 cob(I)yrinic acid a,c 96.4 0.036 7.9E-07 45.0 9.7 48 18-67 13-60 (178)
244 PRK08727 hypothetical protein; 96.4 0.0051 1.1E-07 52.4 5.1 40 27-66 40-79 (233)
245 PF13191 AAA_16: AAA ATPase do 96.4 0.0031 6.7E-08 51.1 3.6 58 10-68 7-64 (185)
246 COG1159 Era GTPase [General fu 96.4 0.041 9E-07 48.0 10.6 37 32-74 10-46 (298)
247 cd01886 EF-G Elongation factor 96.4 0.026 5.7E-07 49.2 9.6 41 225-266 89-129 (270)
248 PRK08006 replicative DNA helic 96.4 0.005 1.1E-07 58.0 5.3 41 27-67 223-264 (471)
249 PF05729 NACHT: NACHT domain 96.4 0.0036 7.7E-08 49.6 3.7 29 29-57 1-29 (166)
250 PRK00131 aroK shikimate kinase 96.4 0.0036 7.8E-08 50.2 3.7 33 28-65 4-36 (175)
251 cd01672 TMPK Thymidine monopho 96.4 0.0056 1.2E-07 50.1 4.9 36 30-65 2-37 (200)
252 PRK06893 DNA replication initi 96.4 0.0048 1E-07 52.4 4.6 37 29-65 40-76 (229)
253 PRK05642 DNA replication initi 96.4 0.0048 1E-07 52.6 4.5 38 29-66 46-83 (234)
254 PLN02974 adenosylmethionine-8- 96.4 0.092 2E-06 52.7 14.0 37 227-263 217-253 (817)
255 PF13671 AAA_33: AAA domain; P 96.4 0.0027 5.8E-08 49.3 2.6 32 30-66 1-32 (143)
256 COG1102 Cmk Cytidylate kinase 96.3 0.0035 7.5E-08 49.8 3.1 24 30-53 2-25 (179)
257 PRK08181 transposase; Validate 96.3 0.0052 1.1E-07 53.5 4.4 35 30-64 108-142 (269)
258 PRK08903 DnaA regulatory inact 96.3 0.0071 1.5E-07 51.1 5.1 39 28-66 42-80 (227)
259 cd02021 GntK Gluconate kinase 96.3 0.0042 9.1E-08 48.8 3.4 34 30-68 1-34 (150)
260 PRK08840 replicative DNA helic 96.3 0.0067 1.5E-07 57.0 5.2 49 19-67 207-257 (464)
261 cd01884 EF_Tu EF-Tu subfamily. 96.3 0.1 2.2E-06 43.2 11.8 26 31-56 5-30 (195)
262 PRK06547 hypothetical protein; 96.3 0.0054 1.2E-07 49.8 4.0 36 25-65 12-47 (172)
263 PRK05748 replicative DNA helic 96.3 0.0063 1.4E-07 57.0 5.0 42 27-68 202-244 (448)
264 PF06414 Zeta_toxin: Zeta toxi 96.2 0.0041 8.9E-08 51.6 3.4 41 24-66 11-51 (199)
265 cd04165 GTPBP1_like GTPBP1-lik 96.2 0.11 2.5E-06 43.9 12.2 39 225-264 111-149 (224)
266 PRK06904 replicative DNA helic 96.2 0.0067 1.4E-07 57.1 5.0 41 27-67 220-261 (472)
267 PF07728 AAA_5: AAA domain (dy 96.2 0.012 2.6E-07 45.6 5.6 45 31-78 2-46 (139)
268 PF12846 AAA_10: AAA-like doma 96.2 0.01 2.2E-07 51.8 5.9 41 31-73 4-44 (304)
269 TIGR00554 panK_bact pantothena 96.2 0.0068 1.5E-07 53.3 4.6 43 26-68 60-104 (290)
270 PF13401 AAA_22: AAA domain; P 96.2 0.0036 7.8E-08 47.8 2.4 46 28-73 4-54 (131)
271 PRK06321 replicative DNA helic 96.2 0.0079 1.7E-07 56.6 5.1 49 19-67 216-266 (472)
272 cd03112 CobW_like The function 96.1 0.063 1.4E-06 42.8 9.7 35 30-66 2-36 (158)
273 cd01894 EngA1 EngA1 subfamily. 96.1 0.061 1.3E-06 41.8 9.5 17 33-49 2-18 (157)
274 PF13604 AAA_30: AAA domain; P 96.1 0.0089 1.9E-07 49.5 4.8 38 28-65 18-55 (196)
275 PRK09165 replicative DNA helic 96.1 0.0082 1.8E-07 57.0 5.1 49 19-67 207-271 (497)
276 PRK14491 putative bifunctional 96.1 0.036 7.8E-07 53.8 9.5 39 28-66 10-48 (597)
277 cd04168 TetM_like Tet(M)-like 96.1 0.044 9.6E-07 46.8 9.1 22 31-52 2-23 (237)
278 PRK06921 hypothetical protein; 96.1 0.0086 1.9E-07 52.1 4.7 37 28-64 117-154 (266)
279 TIGR00436 era GTP-binding prot 96.1 0.053 1.2E-06 47.2 9.6 26 32-63 4-29 (270)
280 PRK08116 hypothetical protein; 96.1 0.0098 2.1E-07 51.8 4.9 36 29-64 115-150 (268)
281 KOG0744 AAA+-type ATPase [Post 96.0 0.075 1.6E-06 47.1 10.2 48 28-75 177-228 (423)
282 COG3598 RepA RecA-family ATPas 96.0 0.023 5.1E-07 50.1 7.0 40 29-68 90-139 (402)
283 PRK06217 hypothetical protein; 96.0 0.0077 1.7E-07 49.2 3.9 32 30-66 3-34 (183)
284 PRK06851 hypothetical protein; 96.0 0.013 2.9E-07 53.1 5.7 41 25-65 211-251 (367)
285 TIGR00235 udk uridine kinase. 96.0 0.011 2.3E-07 49.4 4.8 41 25-67 3-43 (207)
286 COG1072 CoaA Panthothenate kin 96.0 0.014 3E-07 50.4 5.5 42 25-66 79-122 (283)
287 PLN03046 D-glycerate 3-kinase; 96.0 0.012 2.7E-07 54.0 5.3 40 27-66 211-250 (460)
288 PRK05506 bifunctional sulfate 96.0 0.011 2.4E-07 57.8 5.4 43 25-67 457-499 (632)
289 PF13238 AAA_18: AAA domain; P 96.0 0.0065 1.4E-07 45.9 3.1 22 31-52 1-22 (129)
290 PRK00411 cdc6 cell division co 96.0 0.013 2.8E-07 53.7 5.5 61 9-69 36-98 (394)
291 PRK07004 replicative DNA helic 95.9 0.01 2.3E-07 55.7 4.9 42 27-68 212-254 (460)
292 PRK12339 2-phosphoglycerate ki 95.9 0.0085 1.8E-07 49.7 3.8 35 28-66 3-37 (197)
293 PRK12740 elongation factor G; 95.9 0.04 8.6E-07 54.3 9.0 17 35-51 2-18 (668)
294 PRK05636 replicative DNA helic 95.9 0.012 2.6E-07 55.8 5.1 49 19-67 255-305 (505)
295 PF00004 AAA: ATPase family as 95.9 0.013 2.8E-07 44.5 4.4 32 31-65 1-32 (132)
296 PRK04220 2-phosphoglycerate ki 95.9 0.016 3.5E-07 51.1 5.5 41 22-66 86-126 (301)
297 PLN02796 D-glycerate 3-kinase 95.9 0.013 2.9E-07 52.5 5.0 40 27-66 99-138 (347)
298 TIGR02640 gas_vesic_GvpN gas v 95.8 0.018 3.9E-07 49.9 5.6 44 31-77 24-67 (262)
299 PF00931 NB-ARC: NB-ARC domain 95.8 0.011 2.4E-07 51.6 4.2 46 26-71 17-64 (287)
300 PF03266 NTPase_1: NTPase; In 95.8 0.012 2.5E-07 47.6 4.0 30 31-60 2-31 (168)
301 cd02024 NRK1 Nicotinamide ribo 95.8 0.0096 2.1E-07 49.0 3.4 33 30-66 1-33 (187)
302 PHA02530 pseT polynucleotide k 95.8 0.0096 2.1E-07 52.5 3.7 35 28-66 2-36 (300)
303 PRK05537 bifunctional sulfate 95.7 0.018 3.8E-07 55.5 5.4 39 28-66 392-431 (568)
304 cd00881 GTP_translation_factor 95.7 0.11 2.3E-06 41.8 9.3 33 31-63 2-34 (189)
305 PRK05380 pyrG CTP synthetase; 95.6 0.29 6.3E-06 46.5 12.9 44 29-72 3-48 (533)
306 PRK00652 lpxK tetraacyldisacch 95.6 0.018 4E-07 51.5 4.7 38 29-66 51-89 (325)
307 PRK06761 hypothetical protein; 95.6 0.014 3E-07 51.1 3.9 39 28-66 3-42 (282)
308 PRK00093 GTP-binding protein D 95.5 0.15 3.3E-06 47.4 11.0 20 29-49 3-22 (435)
309 KOG2749 mRNA cleavage and poly 95.5 0.019 4.1E-07 51.2 4.5 42 27-69 103-144 (415)
310 PRK08118 topology modulation p 95.5 0.013 2.9E-07 47.2 3.4 22 31-52 4-25 (167)
311 PF01935 DUF87: Domain of unkn 95.5 0.028 6E-07 47.5 5.3 45 18-66 17-62 (229)
312 PRK07933 thymidylate kinase; V 95.5 0.024 5.2E-07 47.6 4.8 36 30-65 2-37 (213)
313 PRK04040 adenylate kinase; Pro 95.5 0.02 4.4E-07 47.1 4.3 31 28-59 2-32 (188)
314 COG0504 PyrG CTP synthase (UTP 95.4 0.16 3.5E-06 47.2 10.2 41 31-71 5-46 (533)
315 COG1855 ATPase (PilT family) [ 95.4 0.017 3.7E-07 53.2 3.9 30 31-60 266-295 (604)
316 COG2109 BtuR ATP:corrinoid ade 95.4 0.12 2.7E-06 42.1 8.4 30 36-65 36-65 (198)
317 PF02492 cobW: CobW/HypB/UreG, 95.4 0.097 2.1E-06 42.5 8.1 37 30-67 2-38 (178)
318 TIGR01313 therm_gnt_kin carboh 95.4 0.015 3.3E-07 46.3 3.2 32 32-68 2-33 (163)
319 COG2403 Predicted GTPase [Gene 95.4 0.03 6.5E-07 50.3 5.2 54 10-64 110-163 (449)
320 PF06418 CTP_synth_N: CTP synt 95.4 0.16 3.4E-06 43.7 9.4 42 31-72 5-47 (276)
321 PTZ00301 uridine kinase; Provi 95.4 0.036 7.8E-07 46.5 5.5 39 28-66 3-43 (210)
322 PF02572 CobA_CobO_BtuR: ATP:c 95.3 0.045 9.7E-07 44.3 5.7 31 37-67 12-42 (172)
323 COG1936 Predicted nucleotide k 95.3 0.02 4.4E-07 46.0 3.7 26 31-60 3-28 (180)
324 PRK15494 era GTPase Era; Provi 95.3 0.17 3.7E-06 45.6 10.1 19 31-49 55-73 (339)
325 TIGR02928 orc1/cdc6 family rep 95.3 0.03 6.5E-07 50.7 5.2 59 9-67 21-85 (365)
326 COG0572 Udk Uridine kinase [Nu 95.2 0.028 6.2E-07 47.1 4.5 38 28-67 8-45 (218)
327 PRK13947 shikimate kinase; Pro 95.2 0.028 6E-07 45.1 4.4 31 31-66 4-34 (171)
328 TIGR00376 DNA helicase, putati 95.2 0.027 5.9E-07 55.1 5.0 35 29-63 174-208 (637)
329 cd02020 CMPK Cytidine monophos 95.2 0.017 3.6E-07 44.9 3.0 31 30-65 1-31 (147)
330 PRK13946 shikimate kinase; Pro 95.2 0.025 5.3E-07 46.3 4.0 33 29-66 11-43 (184)
331 TIGR00101 ureG urease accessor 95.2 0.17 3.7E-06 42.0 9.0 38 31-69 4-41 (199)
332 PLN02924 thymidylate kinase 95.2 0.041 8.8E-07 46.5 5.3 37 27-63 15-51 (220)
333 PRK03839 putative kinase; Prov 95.1 0.026 5.6E-07 45.8 4.0 30 31-65 3-32 (180)
334 PRK00698 tmk thymidylate kinas 95.1 0.043 9.4E-07 45.3 5.3 34 29-62 4-37 (205)
335 PF00910 RNA_helicase: RNA hel 95.1 0.022 4.8E-07 42.3 3.1 24 32-55 2-25 (107)
336 PLN02327 CTP synthase 95.1 0.61 1.3E-05 44.5 13.3 43 31-73 5-48 (557)
337 cd00227 CPT Chloramphenicol (C 95.1 0.023 4.9E-07 46.0 3.4 24 29-52 3-26 (175)
338 cd04169 RF3 RF3 subfamily. Pe 95.1 0.2 4.3E-06 43.6 9.5 24 29-52 3-26 (267)
339 PRK00049 elongation factor Tu; 95.1 0.31 6.8E-06 44.9 11.3 26 31-56 15-40 (396)
340 COG2074 2-phosphoglycerate kin 95.0 0.025 5.5E-07 48.2 3.6 36 26-65 87-122 (299)
341 TIGR00337 PyrG CTP synthase. C 95.0 0.67 1.4E-05 44.0 13.2 43 31-73 5-48 (525)
342 TIGR00682 lpxK tetraacyldisacc 95.0 0.042 9.1E-07 48.9 5.0 38 28-65 29-67 (311)
343 KOG3220 Similar to bacterial d 95.0 0.074 1.6E-06 43.9 6.0 29 126-155 92-120 (225)
344 PRK07261 topology modulation p 94.9 0.033 7.3E-07 45.0 4.0 22 31-52 3-24 (171)
345 PRK06851 hypothetical protein; 94.9 0.061 1.3E-06 48.9 6.0 42 25-66 27-70 (367)
346 PLN02200 adenylate kinase fami 94.9 0.031 6.6E-07 47.7 3.9 26 27-52 42-67 (234)
347 PRK07773 replicative DNA helic 94.9 0.037 8E-07 56.3 5.0 40 28-67 217-257 (886)
348 PLN02348 phosphoribulokinase 94.9 0.057 1.2E-06 49.3 5.7 43 26-68 47-104 (395)
349 PLN03127 Elongation factor Tu; 94.8 0.54 1.2E-05 44.1 12.1 33 25-57 58-90 (447)
350 PRK13948 shikimate kinase; Pro 94.8 0.048 1E-06 44.7 4.5 33 28-65 10-42 (182)
351 PRK01906 tetraacyldisaccharide 94.8 0.046 1E-06 49.2 4.8 39 29-67 58-97 (338)
352 PRK03731 aroL shikimate kinase 94.7 0.038 8.3E-07 44.4 3.9 32 30-66 4-35 (171)
353 PRK12422 chromosomal replicati 94.7 0.039 8.5E-07 51.6 4.4 37 29-65 142-178 (445)
354 PRK13973 thymidylate kinase; P 94.7 0.063 1.4E-06 45.0 5.3 34 29-62 4-37 (213)
355 PF01268 FTHFS: Formate--tetra 94.6 0.062 1.3E-06 50.8 5.4 52 24-77 50-105 (557)
356 PRK12338 hypothetical protein; 94.6 0.034 7.3E-07 49.5 3.5 35 28-66 4-38 (319)
357 TIGR00490 aEF-2 translation el 94.6 0.042 9.1E-07 54.6 4.5 40 225-265 111-150 (720)
358 cd00046 DEXDc DEAD-like helica 94.6 0.057 1.2E-06 40.7 4.4 33 31-63 3-37 (144)
359 TIGR01359 UMP_CMP_kin_fam UMP- 94.6 0.029 6.3E-07 45.5 2.8 31 30-65 1-31 (183)
360 PRK13808 adenylate kinase; Pro 94.5 1.1 2.3E-05 40.3 12.8 22 31-52 3-24 (333)
361 cd00544 CobU Adenosylcobinamid 94.5 0.057 1.2E-06 43.7 4.3 34 31-67 2-35 (169)
362 TIGR01360 aden_kin_iso1 adenyl 94.5 0.043 9.2E-07 44.6 3.6 25 28-52 3-27 (188)
363 PF05970 PIF1: PIF1-like helic 94.5 0.038 8.2E-07 50.3 3.6 38 26-63 20-57 (364)
364 PRK14528 adenylate kinase; Pro 94.4 0.055 1.2E-06 44.4 4.2 23 30-52 3-25 (186)
365 PF02562 PhoH: PhoH-like prote 94.4 0.058 1.3E-06 45.0 4.3 35 28-62 19-55 (205)
366 KOG3347 Predicted nucleotide k 94.4 0.036 7.9E-07 43.6 2.8 20 31-50 10-29 (176)
367 COG1663 LpxK Tetraacyldisaccha 94.4 0.17 3.6E-06 45.2 7.3 41 28-68 48-89 (336)
368 PF02606 LpxK: Tetraacyldisacc 94.4 0.06 1.3E-06 48.2 4.6 39 28-66 36-75 (326)
369 TIGR00362 DnaA chromosomal rep 94.4 0.052 1.1E-06 50.1 4.3 37 29-65 137-175 (405)
370 PLN03025 replication factor C 94.3 0.05 1.1E-06 48.6 4.0 48 19-66 25-72 (319)
371 PRK01184 hypothetical protein; 94.3 0.056 1.2E-06 44.0 4.0 32 28-65 1-32 (184)
372 cd01131 PilT Pilus retraction 94.3 0.095 2.1E-06 43.4 5.3 35 30-64 3-38 (198)
373 PLN03126 Elongation factor Tu; 94.2 0.62 1.3E-05 44.1 11.3 29 25-53 78-106 (478)
374 PF07724 AAA_2: AAA domain (Cd 94.2 0.094 2E-06 42.5 5.1 40 28-67 3-43 (171)
375 CHL00071 tufA elongation facto 94.2 0.95 2.1E-05 41.9 12.3 25 29-53 13-37 (409)
376 PRK10536 hypothetical protein; 94.2 0.11 2.5E-06 44.7 5.8 49 29-78 75-124 (262)
377 PRK14527 adenylate kinase; Pro 94.2 0.054 1.2E-06 44.5 3.7 26 27-52 5-30 (191)
378 PRK00091 miaA tRNA delta(2)-is 94.2 0.056 1.2E-06 48.0 4.0 34 28-66 4-37 (307)
379 smart00763 AAA_PrkA PrkA AAA d 94.1 0.046 1E-06 49.4 3.3 29 26-54 76-104 (361)
380 PRK14730 coaE dephospho-CoA ki 94.0 0.08 1.7E-06 43.8 4.3 32 29-65 2-33 (195)
381 cd00464 SK Shikimate kinase (S 94.0 0.064 1.4E-06 42.0 3.6 30 31-65 2-31 (154)
382 TIGR02880 cbbX_cfxQ probable R 94.0 0.074 1.6E-06 46.8 4.3 35 30-64 60-98 (284)
383 CHL00181 cbbX CbbX; Provisiona 94.0 0.075 1.6E-06 46.8 4.3 34 31-64 62-99 (287)
384 TIGR00503 prfC peptide chain r 93.9 0.44 9.5E-06 45.6 9.7 24 28-51 11-34 (527)
385 KOG0991 Replication factor C, 93.9 0.033 7.1E-07 47.1 1.9 47 19-65 39-85 (333)
386 TIGR01650 PD_CobS cobaltochela 93.9 0.098 2.1E-06 46.7 5.0 44 31-77 67-110 (327)
387 COG2256 MGS1 ATPase related to 93.9 0.061 1.3E-06 48.9 3.6 32 19-50 39-70 (436)
388 PRK12735 elongation factor Tu; 93.9 1.4 2.9E-05 40.7 12.7 24 31-54 15-38 (396)
389 TIGR03345 VI_ClpV1 type VI sec 93.9 0.13 2.7E-06 52.2 6.2 51 28-78 596-649 (852)
390 PRK00625 shikimate kinase; Pro 93.8 0.065 1.4E-06 43.5 3.4 30 31-65 3-32 (173)
391 PRK12402 replication factor C 93.8 0.066 1.4E-06 47.8 3.8 47 19-65 27-75 (337)
392 PRK00149 dnaA chromosomal repl 93.8 0.075 1.6E-06 49.8 4.3 37 29-65 149-187 (450)
393 PF13521 AAA_28: AAA domain; P 93.8 0.072 1.6E-06 42.4 3.6 21 31-51 2-22 (163)
394 PRK13507 formate--tetrahydrofo 93.8 0.085 1.8E-06 49.9 4.4 40 36-77 75-114 (587)
395 PRK12739 elongation factor G; 93.8 0.44 9.6E-06 47.2 9.7 41 225-266 98-138 (691)
396 TIGR02881 spore_V_K stage V sp 93.8 0.07 1.5E-06 46.2 3.7 26 31-56 45-70 (261)
397 PRK09866 hypothetical protein; 93.7 0.44 9.6E-06 46.3 9.2 41 225-265 260-301 (741)
398 PRK08356 hypothetical protein; 93.7 0.11 2.3E-06 42.9 4.6 26 29-58 6-31 (195)
399 CHL00095 clpC Clp protease ATP 93.7 0.17 3.6E-06 51.2 6.7 47 30-76 541-590 (821)
400 PRK12736 elongation factor Tu; 93.7 0.86 1.9E-05 42.0 11.0 22 31-52 15-36 (394)
401 TIGR00150 HI0065_YjeE ATPase, 93.7 0.054 1.2E-06 41.9 2.6 42 10-53 6-47 (133)
402 PRK13764 ATPase; Provisional 93.7 0.098 2.1E-06 50.6 4.8 35 29-63 258-292 (602)
403 PRK14531 adenylate kinase; Pro 93.6 0.08 1.7E-06 43.2 3.6 23 30-52 4-26 (183)
404 PRK14088 dnaA chromosomal repl 93.6 0.085 1.8E-06 49.4 4.2 36 30-65 132-169 (440)
405 cd02022 DPCK Dephospho-coenzym 93.6 0.086 1.9E-06 42.9 3.8 30 30-65 1-30 (179)
406 TIGR02639 ClpA ATP-dependent C 93.6 0.28 6.2E-06 48.9 8.1 45 30-77 486-533 (731)
407 COG0305 DnaB Replicative DNA h 93.6 0.12 2.6E-06 47.9 5.0 49 19-67 186-236 (435)
408 PRK14964 DNA polymerase III su 93.5 0.3 6.5E-06 46.2 7.7 36 18-53 24-60 (491)
409 cd01428 ADK Adenylate kinase ( 93.5 0.085 1.8E-06 43.1 3.7 30 31-65 2-31 (194)
410 PLN02759 Formate--tetrahydrofo 93.5 0.1 2.2E-06 49.7 4.6 40 36-77 81-121 (637)
411 TIGR02782 TrbB_P P-type conjug 93.5 0.11 2.3E-06 46.1 4.5 35 29-63 133-169 (299)
412 PF00437 T2SE: Type II/IV secr 93.5 0.099 2.2E-06 45.4 4.3 40 28-67 127-166 (270)
413 PRK00007 elongation factor G; 93.5 0.51 1.1E-05 46.8 9.6 41 225-266 100-140 (693)
414 PRK04195 replication factor C 93.5 0.11 2.3E-06 49.3 4.7 39 26-67 37-75 (482)
415 PRK13695 putative NTPase; Prov 93.5 0.14 3.1E-06 41.2 4.9 30 31-60 3-32 (174)
416 PRK00741 prfC peptide chain re 93.5 0.54 1.2E-05 45.0 9.4 39 225-264 104-142 (526)
417 PLN02165 adenylate isopentenyl 93.4 0.068 1.5E-06 47.8 3.1 38 24-66 39-76 (334)
418 PRK12337 2-phosphoglycerate ki 93.4 0.092 2E-06 49.0 4.0 37 26-66 253-289 (475)
419 TIGR02760 TraI_TIGR conjugativ 93.4 0.69 1.5E-05 51.0 11.1 47 27-75 445-491 (1960)
420 TIGR02322 phosphon_PhnN phosph 93.3 0.082 1.8E-06 42.7 3.3 28 29-56 2-29 (179)
421 PRK08154 anaerobic benzoate ca 93.3 0.085 1.8E-06 46.9 3.6 33 28-65 133-165 (309)
422 PLN02422 dephospho-CoA kinase 93.3 0.12 2.5E-06 44.1 4.2 31 29-65 2-32 (232)
423 PF05496 RuvB_N: Holliday junc 93.3 0.07 1.5E-06 45.0 2.7 33 29-64 51-83 (233)
424 PRK05057 aroK shikimate kinase 93.2 0.11 2.3E-06 42.1 3.7 32 30-66 6-37 (172)
425 PRK14532 adenylate kinase; Pro 93.2 0.077 1.7E-06 43.3 2.9 30 31-65 3-32 (188)
426 PRK02496 adk adenylate kinase; 93.2 0.1 2.2E-06 42.4 3.7 22 31-52 4-25 (184)
427 TIGR03594 GTPase_EngA ribosome 93.2 0.88 1.9E-05 42.2 10.3 40 225-265 80-119 (429)
428 PRK14733 coaE dephospho-CoA ki 93.2 0.15 3.2E-06 42.6 4.6 34 28-66 6-39 (204)
429 cd01129 PulE-GspE PulE/GspE Th 93.2 0.12 2.5E-06 45.0 4.1 36 28-63 80-115 (264)
430 PRK13975 thymidylate kinase; P 93.2 0.11 2.4E-06 42.6 3.8 25 29-53 3-27 (196)
431 COG0378 HypB Ni2+-binding GTPa 93.1 0.23 4.9E-06 40.9 5.4 40 28-68 13-52 (202)
432 PRK00081 coaE dephospho-CoA ki 93.1 0.12 2.7E-06 42.6 4.1 32 28-65 2-33 (194)
433 PRK13949 shikimate kinase; Pro 93.1 0.081 1.8E-06 42.7 2.9 30 31-65 4-33 (169)
434 PF00308 Bac_DnaA: Bacterial d 93.0 0.11 2.3E-06 43.9 3.6 37 29-65 35-73 (219)
435 PRK04182 cytidylate kinase; Pr 93.0 0.094 2E-06 42.2 3.2 30 30-64 2-31 (180)
436 PF01580 FtsK_SpoIIIE: FtsK/Sp 93.0 0.14 3E-06 42.5 4.2 35 31-65 41-79 (205)
437 PRK14958 DNA polymerase III su 92.9 0.58 1.3E-05 44.6 8.7 37 18-54 27-64 (509)
438 PRK05800 cobU adenosylcobinami 92.9 0.12 2.6E-06 41.8 3.5 33 30-65 3-35 (170)
439 COG0237 CoaE Dephospho-CoA kin 92.9 0.16 3.5E-06 42.3 4.3 32 28-65 2-33 (201)
440 TIGR03172 probable selenium-de 92.8 0.1 2.3E-06 44.3 3.2 29 36-64 5-33 (232)
441 cd02026 PRK Phosphoribulokinas 92.8 0.09 1.9E-06 45.9 2.9 34 31-66 2-35 (273)
442 PRK00440 rfc replication facto 92.8 0.17 3.7E-06 44.7 4.8 47 20-66 30-76 (319)
443 PF02223 Thymidylate_kin: Thym 92.8 0.13 2.8E-06 41.9 3.6 33 35-68 3-35 (186)
444 PRK14734 coaE dephospho-CoA ki 92.7 0.18 3.9E-06 41.9 4.5 31 29-65 2-32 (200)
445 PRK14490 putative bifunctional 92.7 0.24 5.3E-06 45.2 5.7 36 29-65 6-41 (369)
446 TIGR02768 TraA_Ti Ti-type conj 92.6 0.16 3.4E-06 50.7 4.7 35 29-63 369-403 (744)
447 PRK07429 phosphoribulokinase; 92.6 0.17 3.7E-06 45.4 4.5 38 28-67 8-45 (327)
448 PRK14530 adenylate kinase; Pro 92.6 0.13 2.8E-06 43.1 3.5 22 31-52 6-27 (215)
449 TIGR03783 Bac_Flav_CT_G Bacter 92.6 0.17 3.7E-06 51.0 4.9 44 31-74 441-485 (829)
450 TIGR03346 chaperone_ClpB ATP-d 92.6 0.19 4.2E-06 50.9 5.3 49 29-77 596-647 (852)
451 COG2759 MIS1 Formyltetrahydrof 92.5 0.088 1.9E-06 48.4 2.5 40 36-77 64-103 (554)
452 PF05673 DUF815: Protein of un 92.5 0.54 1.2E-05 40.2 7.1 61 16-76 40-100 (249)
453 TIGR01351 adk adenylate kinase 92.5 0.11 2.4E-06 43.3 3.0 22 31-52 2-23 (210)
454 PF05707 Zot: Zonular occluden 92.5 0.13 2.8E-06 42.4 3.3 35 30-65 2-37 (193)
455 COG2019 AdkA Archaeal adenylat 92.5 0.17 3.7E-06 40.6 3.8 25 28-52 4-28 (189)
456 PRK13976 thymidylate kinase; P 92.5 0.22 4.7E-06 41.7 4.7 37 30-67 2-40 (209)
457 COG3265 GntK Gluconate kinase 92.5 0.074 1.6E-06 41.8 1.7 34 35-73 2-38 (161)
458 COG0563 Adk Adenylate kinase a 92.4 0.13 2.8E-06 41.9 3.2 21 31-51 3-23 (178)
459 TIGR03263 guanyl_kin guanylate 92.4 0.12 2.6E-06 41.8 3.0 24 29-52 2-25 (180)
460 PRK14731 coaE dephospho-CoA ki 92.4 0.23 5E-06 41.5 4.8 32 28-65 5-36 (208)
461 PF13555 AAA_29: P-loop contai 92.4 0.21 4.5E-06 33.2 3.6 25 30-54 25-49 (62)
462 PRK00279 adk adenylate kinase; 92.4 0.13 2.8E-06 43.1 3.3 43 200-246 167-209 (215)
463 COG0194 Gmk Guanylate kinase [ 92.4 0.13 2.8E-06 42.0 3.1 25 28-52 4-28 (191)
464 KOG3062 RNA polymerase II elon 92.4 0.21 4.5E-06 42.1 4.3 35 30-64 3-39 (281)
465 PTZ00386 formyl tetrahydrofola 92.4 0.14 3.1E-06 48.7 3.8 40 36-77 80-120 (625)
466 COG0125 Tmk Thymidylate kinase 92.4 0.29 6.4E-06 40.9 5.3 35 29-63 4-38 (208)
467 TIGR02639 ClpA ATP-dependent C 92.3 0.34 7.3E-06 48.4 6.6 34 31-64 206-246 (731)
468 TIGR00484 EF-G translation elo 92.3 0.81 1.8E-05 45.4 9.2 40 225-265 100-139 (689)
469 PRK13342 recombination factor 92.3 0.16 3.4E-06 47.1 3.9 34 19-52 27-60 (413)
470 TIGR03015 pepcterm_ATPase puta 92.2 0.13 2.8E-06 44.4 3.2 27 28-54 43-69 (269)
471 KOG2004 Mitochondrial ATP-depe 92.2 0.1 2.2E-06 50.8 2.7 35 25-59 435-469 (906)
472 TIGR01394 TypA_BipA GTP-bindin 92.2 1.3 2.8E-05 43.2 10.2 40 225-265 89-128 (594)
473 PRK14738 gmk guanylate kinase; 92.2 0.16 3.5E-06 42.3 3.6 25 25-49 10-34 (206)
474 PRK12323 DNA polymerase III su 92.2 0.96 2.1E-05 44.2 9.2 37 18-54 27-64 (700)
475 PTZ00451 dephospho-CoA kinase; 92.2 0.2 4.3E-06 43.0 4.2 32 29-65 2-33 (244)
476 TIGR02173 cyt_kin_arch cytidyl 92.1 0.15 3.2E-06 40.7 3.2 31 30-65 2-32 (171)
477 TIGR00485 EF-Tu translation el 92.1 1.8 3.9E-05 39.9 10.7 28 29-56 13-40 (394)
478 COG1428 Deoxynucleoside kinase 92.1 0.16 3.4E-06 42.4 3.2 25 29-53 5-29 (216)
479 KOG2878 Predicted kinase [Gene 92.0 0.17 3.7E-06 41.8 3.4 38 28-65 31-71 (282)
480 TIGR00152 dephospho-CoA kinase 92.0 0.17 3.6E-06 41.4 3.4 30 31-65 2-31 (188)
481 PLN02840 tRNA dimethylallyltra 92.0 0.17 3.7E-06 46.8 3.7 34 27-65 20-53 (421)
482 PRK13351 elongation factor G; 92.0 0.84 1.8E-05 45.3 8.8 39 225-264 98-136 (687)
483 PRK03003 GTP-binding protein D 91.9 1.7 3.7E-05 41.0 10.5 23 27-49 37-59 (472)
484 TIGR02746 TraC-F-type type-IV 91.8 0.26 5.6E-06 49.7 5.1 45 31-75 433-478 (797)
485 PRK10865 protein disaggregatio 91.8 0.22 4.8E-06 50.5 4.6 37 30-66 201-244 (857)
486 PTZ00112 origin recognition co 91.7 0.3 6.5E-06 49.2 5.3 57 9-65 761-825 (1164)
487 COG3172 NadR Predicted ATPase/ 91.7 2.7 5.8E-05 33.7 9.6 25 28-52 8-32 (187)
488 PTZ00088 adenylate kinase 1; P 91.6 0.18 4E-06 42.8 3.3 30 31-65 9-38 (229)
489 PLN03210 Resistant to P. syrin 91.6 0.29 6.4E-06 51.4 5.5 39 25-63 204-242 (1153)
490 PF08303 tRNA_lig_kinase: tRNA 91.5 0.13 2.8E-06 41.2 2.2 26 32-57 3-28 (168)
491 PF07726 AAA_3: ATPase family 91.5 0.096 2.1E-06 40.2 1.4 43 32-77 3-45 (131)
492 TIGR03754 conj_TOL_TraD conjug 91.5 0.32 6.9E-06 47.4 5.2 39 31-69 183-221 (643)
493 TIGR00635 ruvB Holliday juncti 91.5 0.15 3.2E-06 45.0 2.7 35 28-65 30-64 (305)
494 KOG1805 DNA replication helica 91.5 0.2 4.3E-06 50.3 3.7 35 31-65 688-722 (1100)
495 PLN02459 probable adenylate ki 91.4 0.27 5.9E-06 42.5 4.2 43 200-246 204-246 (261)
496 PRK13721 conjugal transfer ATP 91.4 0.26 5.7E-06 50.0 4.7 46 31-76 452-498 (844)
497 PRK00300 gmk guanylate kinase; 91.4 0.18 3.9E-06 41.7 3.0 26 27-52 4-29 (205)
498 PLN02748 tRNA dimethylallyltra 91.4 0.26 5.7E-06 46.3 4.3 33 28-65 22-54 (468)
499 PLN02318 phosphoribulokinase/u 91.3 0.31 6.6E-06 47.0 4.7 39 26-68 63-101 (656)
500 PRK14086 dnaA chromosomal repl 91.3 0.26 5.6E-06 47.7 4.3 36 30-65 316-353 (617)
No 1
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-44 Score=295.10 Aligned_cols=258 Identities=67% Similarity=1.089 Sum_probs=235.7
Q ss_pred cccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceee
Q 023886 15 PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAM 94 (276)
Q Consensus 15 ~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~ 94 (276)
+.+++++++++...+++|+.|||||||||+++.||..+|+.+.+||+|..||.+|+++.|+.+....++.++|+++|++.
T Consensus 6 le~~l~nil~q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkftk~pt~V~Gf~nLfAM 85 (323)
T KOG2825|consen 6 LEATLQNILEQTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKFTKTPTKVEGFENLFAM 85 (323)
T ss_pred cchhHHHHhhcceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHhcCCCccccChhhheee
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccc-cccC-------ccCc--chHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHH
Q 023886 95 EVDPSVEE-ETGS-------TEGM--DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPST 164 (276)
Q Consensus 95 ~~~~~~~~-~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~ 164 (276)
+++|+... +++. +.+. .....++....||.+++..+.+++..++..+||.||+||+|++++++++.+|..
T Consensus 86 EIDp~~e~~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTAPTGHTLRlL~fP~~ 165 (323)
T KOG2825|consen 86 EIDPNVEMGDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTAPTGHTLRLLQFPTT 165 (323)
T ss_pred ecCCchhhhhhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccCCCcceehhhccchH
Confidence 99998766 2211 1111 345667788889999999999999999988999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHH
Q 023886 165 LEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL 244 (276)
Q Consensus 165 ~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~ 244 (276)
+++++.+++++..++.+++|....++|. .....+++..+++..++..++++++|+||..++++.|++|+..++.|++|+
T Consensus 166 lek~lgKl~~l~~k~~pm~sq~~sm~g~-~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRl 244 (323)
T KOG2825|consen 166 LEKGLGKLLSLKNKIGPMLSQMGSMFGM-EDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERL 244 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHHHH
Confidence 9999999999999999999999999884 234456788999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCcCeEEEccccCCCCCCCCC
Q 023886 245 VQELTKFEIDTHNIIINQVLYDDEGMHCN 273 (276)
Q Consensus 245 ~~~l~~~~~~~~g~vvN~~~~~~~~~~~~ 273 (276)
++.|.++++.+..+|||+++.+++..+|+
T Consensus 245 iqeL~k~~idthnIIVNQLL~~~~~~~ck 273 (323)
T KOG2825|consen 245 IQELAKQGIDTHNIIVNQLLFPDNEVSCK 273 (323)
T ss_pred HHHHHhcCCcccceeeeeccCCCCccchH
Confidence 99999999999999999999999878886
No 2
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=100.00 E-value=4.5e-41 Score=296.29 Aligned_cols=241 Identities=39% Similarity=0.668 Sum_probs=199.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccc-cc--
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET-- 104 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-- 104 (276)
+|++|++|||||||||+|+++|.++|++|+||||++.||.+++++.||.+...+++.+.+.++|++.++++...+ ++
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~~~ 80 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEYWE 80 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999988888888888899999999987665 21
Q ss_pred ------cCc---cCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHH
Q 023886 105 ------GST---EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSL 175 (276)
Q Consensus 105 ------~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~ 175 (276)
... .....+...+....||+++...|.++.+.+..++||+|||||||++++++++.+|..+.+|++++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~lP~~l~~~l~~l~~~ 160 (305)
T PF02374_consen 81 EVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSLPERLRWWLDRLLKL 160 (305)
T ss_dssp HHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhHHHHHHHHHHHHHHH
Confidence 111 11223445566677999999999999999987799999999999999999999999999999999999
Q ss_pred HHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCc
Q 023886 176 KNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDT 255 (276)
Q Consensus 176 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~ 255 (276)
.+++.+..+++... +. .....+.+++.+...++.++++++.+.|+..+++++|++|+..++.|++++++.|+.+|+++
T Consensus 161 ~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L~~~gi~v 238 (305)
T PF02374_consen 161 RRKIRSLARPLSGL-GL-GAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTELKLYGIPV 238 (305)
T ss_dssp HHCHHHHHHHHCHS-HC-CHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EE
T ss_pred HHhhcchhhhhhcc-cc-cccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCcc
Confidence 98888877766441 11 02222356688888999999999999999999999999999999999999999999999999
Q ss_pred CeEEEccccCCCCCC
Q 023886 256 HNIIINQVLYDDEGM 270 (276)
Q Consensus 256 ~g~vvN~~~~~~~~~ 270 (276)
.++|+||++|++...
T Consensus 239 ~~vVvNrvlp~~~~~ 253 (305)
T PF02374_consen 239 DAVVVNRVLPEEEDD 253 (305)
T ss_dssp EEEEEEEE-TTCSTT
T ss_pred CeEEEEccccccccc
Confidence 999999998887554
No 3
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.9e-36 Score=266.24 Aligned_cols=236 Identities=39% Similarity=0.635 Sum_probs=202.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccc-cc--
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET-- 104 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-- 104 (276)
.+|+|++|||||||||+|+++|..+|+.|+|||+|..||.+++++.|+.+.+..+..+. +++.+.++++.... ++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~--~nL~a~eiD~~~~l~ey~~ 79 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVG--PNLDALELDPEKALEEYWD 79 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcC--CCCceeeecHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999997766665554 89999999987765 11
Q ss_pred ---------cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHH-
Q 023886 105 ---------GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMS- 174 (276)
Q Consensus 105 ---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~- 174 (276)
.....+.....+.....||+++...|.++.+.+..++||+||+||||++++++++.+|..+++|++++..
T Consensus 80 ~v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~lP~~~~~~~~~~~~~ 159 (322)
T COG0003 80 EVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLGWYLEKLFKP 159 (322)
T ss_pred HHHHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhccHHHHHHHHHhhhhh
Confidence 2222334555666677899999999999999998889999999999999999999999999999999886
Q ss_pred HHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCC
Q 023886 175 LKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEID 254 (276)
Q Consensus 175 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~ 254 (276)
....+......+..+.+. ..+.+..+..++...+...++++.+.++..+.+.+|++|+..++.|+.++...+.+++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~--~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~l~~~~i~ 237 (322)
T COG0003 160 RRKRMVKALKSLSTAAGS--PLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYGIP 237 (322)
T ss_pred HHHHHHHhhhhcccccCC--cCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHHHHHHcCCc
Confidence 444444444455555554 333667789999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEccccCCC
Q 023886 255 THNIIINQVLYDD 267 (276)
Q Consensus 255 ~~g~vvN~~~~~~ 267 (276)
+.++++|++.|++
T Consensus 238 v~~vi~n~~~p~~ 250 (322)
T COG0003 238 VDAVIVNKILPDE 250 (322)
T ss_pred hheeeeecccccc
Confidence 9999999998776
No 4
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=100.00 E-value=4.2e-32 Score=234.24 Aligned_cols=192 Identities=49% Similarity=0.807 Sum_probs=155.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccc-cc---
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET--- 104 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~--- 104 (276)
++++++||||+||||+|+|+|..+|+.|+||||||+||++++++.|+.+....+....+..++...++++...+ ++
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~~ 80 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQE 80 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999875433444456678888888776554 11
Q ss_pred -----cCc---cCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHH
Q 023886 105 -----GST---EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLK 176 (276)
Q Consensus 105 -----~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~ 176 (276)
... ............. |++.+...+.++.+.+++.+||+|||||||++++++++.+|..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~tlrlL~lp~~l~~--------- 150 (254)
T cd00550 81 VLEPIEANLLLEMLKGILEEELES-PGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSW--------- 150 (254)
T ss_pred HHHHHHhhccchhHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHhHHHHHH---------
Confidence 111 1111222223333 8999998899998888766899999999999999999999876532
Q ss_pred HHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcC
Q 023886 177 NKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTH 256 (276)
Q Consensus 177 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~ 256 (276)
+.+.+.|+..+++++|++|+.+++.++.++++.|+++|+++.
T Consensus 151 --------------------------------------~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~ 192 (254)
T cd00550 151 --------------------------------------AREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVD 192 (254)
T ss_pred --------------------------------------HHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCC
Confidence 333456888899999999999999999999999999999999
Q ss_pred eEEEccccCCCC
Q 023886 257 NIIINQVLYDDE 268 (276)
Q Consensus 257 g~vvN~~~~~~~ 268 (276)
|+|+|++.++..
T Consensus 193 gvV~N~v~~~~~ 204 (254)
T cd00550 193 AVIVNQLLPEDV 204 (254)
T ss_pred EEEEecCccccc
Confidence 999999987664
No 5
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=99.97 E-value=1.9e-28 Score=214.63 Aligned_cols=218 Identities=44% Similarity=0.646 Sum_probs=181.1
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccc-cc-----------cCccCcc
Q 023886 44 CSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET-----------GSTEGMD 111 (276)
Q Consensus 44 ~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-----------~~~~~~~ 111 (276)
+|+++|..+|+.|+|||+||+||+++++..||.+.+..++.+.+.++++..++++.... ++ ....+..
T Consensus 1 ~a~a~a~~~a~~g~~vllv~~Dp~~~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (284)
T TIGR00345 1 ISCATAIRLAEQGKKVLLVSTDPAHSLSDVFEQEIGHTPTKVTGVENLSAVEIDPQAALEEYRAKLVEQIKGNLPDGDML 80 (284)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCCCCHHHHhCCccCCCCeeccCCCCceEEEcCHHHHHHHHHHHHHHHHhhhccccccH
Confidence 47899999999999999999999999999999887777776666789999999887665 11 0111111
Q ss_pred hHHHHHhccCCCchHHHHHHHHHHHhcc--CCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhh
Q 023886 112 SLFSELANAIPGIDEAMSFAEMLKLVQT--MDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRL 189 (276)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~--~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~ 189 (276)
....+.....||+++...|.++.+.+.. ++||+||+||||++++++++.+|..+.+|++++.+...++.++..++
T Consensus 81 ~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~~yD~iVvDtaPtghtLrlL~lP~~l~~~l~~~~~~~~~~~~~~~~~--- 157 (284)
T TIGR00345 81 GDQLEGAALSPGIDEIAAFDEFLKHMTDAENEFDVVIFDTAPTGHTLRLLQLPEVLSSFLEKFIKIRSKLGPMLKLF--- 157 (284)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHHHhhccCCEEEECCCChHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 1112223456999999999998888754 58999999999999999999999999999999999988877665543
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCCC
Q 023886 190 FGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDD 267 (276)
Q Consensus 190 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~~ 267 (276)
.|. .+.+.+++.+...++.++++++.+.|+..+++++|++|+.+++.++.++++.+++.++++.++|+|++.+..
T Consensus 158 ~~~---~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~~~ 232 (284)
T TIGR00345 158 MGA---GESDEALEKLEELKEQIEAAREILSDPERTSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLPEN 232 (284)
T ss_pred cCC---CcchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcCCC
Confidence 332 133567788999999999999999999999999999999999999999999999999999999999998754
No 6
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.94 E-value=4e-25 Score=191.33 Aligned_cols=190 Identities=18% Similarity=0.174 Sum_probs=128.2
Q ss_pred hhhhccccccchhhhhcC---CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCC-Cc
Q 023886 8 QDQELEIPEGSVRNILEQ---DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTK-TP 82 (276)
Q Consensus 8 ~~~~~~~~~~~l~~~~~~---~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~-~~ 82 (276)
..+.++..+.+++..... ....|+++|+|||+||||+|+|||.++|+.|+||++||+|. .+++...|+.+... ..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~ 114 (265)
T COG0489 35 ASEALRALRTNLKFAKVLRKGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLT 114 (265)
T ss_pred hhhhhhhhhcchhhhhccccccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcc
Confidence 455566666643333322 45677799999999999999999999999999999999997 56788999885422 11
Q ss_pred ceeccCCCceeeecCCcccccccCccCcchHHHH-HhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh
Q 023886 83 TLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSE-LANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF 161 (276)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i 161 (276)
....+.. +... .....+ ..++..+.. ....+.+......+.++++.+.++.||||||||||..+......+
T Consensus 115 ~~~~g~~-~~~~--~~~~~~-----~~lsi~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~ 186 (265)
T COG0489 115 ELLAGEA-LEPV--IQHDGI-----KVLSILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVL 186 (265)
T ss_pred cccCCCc-cccc--eecCcc-----ceEEEEecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHH
Confidence 1111100 1100 000000 001111000 111233445566899999999985599999999998443321111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHH
Q 023886 162 PSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYET 241 (276)
Q Consensus 162 p~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea 241 (276)
....+++++|++|+.+...++
T Consensus 187 -----------------------------------------------------------~~~~~g~viVt~p~~~~~~~v 207 (265)
T COG0489 187 -----------------------------------------------------------QRIPDGVVIVTTPGKTALEDV 207 (265)
T ss_pred -----------------------------------------------------------hccCCeEEEEeCCccchHHHH
Confidence 112247999999999999999
Q ss_pred HHHHHHHhhCCCCcCeEEEcccc
Q 023886 242 ERLVQELTKFEIDTHNIIINQVL 264 (276)
Q Consensus 242 ~~~~~~l~~~~~~~~g~vvN~~~ 264 (276)
+++.+.+++.+.++.|+|.|+..
T Consensus 208 ~ka~~~~~~~~~~vlGvv~Nm~~ 230 (265)
T COG0489 208 KKAIDMLEKAGIPVLGVVENMSY 230 (265)
T ss_pred HHHHHHHHhcCCceEEEEecCcc
Confidence 99999999999999999999884
No 7
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.8e-26 Score=190.82 Aligned_cols=183 Identities=19% Similarity=0.193 Sum_probs=126.9
Q ss_pred hcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcceeccCCCceeeecCCccc
Q 023886 23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVE 101 (276)
Q Consensus 23 ~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 101 (276)
+.+-+.+|++.||||||||||+|+|||.+||+.|++|.++|+|. .+++..++|.+... ..+.-.++........-.
T Consensus 43 l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~---~~~~~~g~~Pv~~~~~l~ 119 (300)
T KOG3022|consen 43 LSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEV---VHQSDNGWIPVVVNKNLK 119 (300)
T ss_pred ccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCce---eeecCCCceeeeecCCeE
Confidence 33445788899999999999999999999999999999999997 57788888876432 111111221111111000
Q ss_pred ccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 023886 102 EETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181 (276)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~ 181 (276)
. -+.++..-+.+-...+.|......+++++....+++.||+||||||+.+.-- +++
T Consensus 120 ~---mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDeh-ls~-------------------- 175 (300)
T KOG3022|consen 120 L---MSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEH-LSL-------------------- 175 (300)
T ss_pred E---EEeeeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhh-hhe--------------------
Confidence 0 0011111111122345566667788999999999899999999999844211 000
Q ss_pred hHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEc
Q 023886 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN 261 (276)
Q Consensus 182 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN 261 (276)
. +. .+..++.++||||...++.++++.+.++++.++++.|+|.|
T Consensus 176 --------~--------------------------~~--~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVEN 219 (300)
T KOG3022|consen 176 --------V--------------------------QF--LRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVEN 219 (300)
T ss_pred --------e--------------------------ec--ccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEec
Confidence 0 00 11126789999999999999999999999999999999999
Q ss_pred cccCCCCCCCCC
Q 023886 262 QVLYDDEGMHCN 273 (276)
Q Consensus 262 ~~~~~~~~~~~~ 273 (276)
|+ ...|+
T Consensus 220 Ms-----~f~Cp 226 (300)
T KOG3022|consen 220 MS-----GFVCP 226 (300)
T ss_pred cc-----cccCC
Confidence 99 55565
No 8
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.93 E-value=4.4e-26 Score=199.16 Aligned_cols=186 Identities=16% Similarity=0.161 Sum_probs=126.1
Q ss_pred chhhhccccccchhhhhc-CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC-ChhHHhccccCCCcce
Q 023886 7 DQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQRFTKTPTL 84 (276)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~-~l~~~l~~~~~~~~~~ 84 (276)
+.+|+|+.+++++..... +..+.|+|+|+|||+||||+|.|||.++|+.|+|||+||+|++. +++..|+.+.. +.+
T Consensus 82 ~~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~--~gl 159 (274)
T TIGR03029 82 PQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQ--RGL 159 (274)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCC--CCH
Confidence 467999999999987654 45566679999999999999999999999999999999999864 45667765432 222
Q ss_pred eccCCC---ceeee-cCCcccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhh
Q 023886 85 VNGFSN---LYAME-VDPSVEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLL 159 (276)
Q Consensus 85 ~~~~~~---l~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~ 159 (276)
.+.+.+ ..... ......+++ +.+...... ..+. ....+.++++.+++ .||||||||||........
T Consensus 160 ~~~l~~~~~~~~i~~~~~~~~l~~lp~g~~~~~~-~~~~-------~~~~~~~~l~~l~~-~yD~ViiD~pp~~~~~d~~ 230 (274)
T TIGR03029 160 SDILAGRSDLEVITHIPALENLSVLPAGAIPPNP-QELL-------ARPAFTDLLNKVMG-DYDVVIVDTPSAEHSSDAQ 230 (274)
T ss_pred HHHhCCCCCHHHeeecCCCCCEEEEeCcCCCCCH-HHHh-------CcHHHHHHHHHHHh-cCCEEEEeCCCcccccHHH
Confidence 111111 00000 000011111 222111111 1111 11357888999986 9999999999973321111
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHH
Q 023886 160 QFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLY 239 (276)
Q Consensus 160 ~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ 239 (276)
.+ -...+.+++|+.++.++..
T Consensus 231 ~~-----------------------------------------------------------~~~~d~vilV~~~~~t~~~ 251 (274)
T TIGR03029 231 IV-----------------------------------------------------------ATRARGTLIVSRVNETRLH 251 (274)
T ss_pred HH-----------------------------------------------------------HHhCCeEEEEEECCCCCHH
Confidence 11 0123679999999999999
Q ss_pred HHHHHHHHHhhCCCCcCeEEEcc
Q 023886 240 ETERLVQELTKFEIDTHNIIINQ 262 (276)
Q Consensus 240 ea~~~~~~l~~~~~~~~g~vvN~ 262 (276)
++.++.+.+++.|.++.|+|+|+
T Consensus 252 ~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 252 ELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHHHHhCCCCEEEEEeCC
Confidence 99999999999999999999996
No 9
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.93 E-value=2.9e-25 Score=200.61 Aligned_cols=173 Identities=20% Similarity=0.207 Sum_probs=109.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh-HHhccccCCCcceeccCCCceeeecCCcccccc
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS-DAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET 104 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~-~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 104 (276)
-.+.|+|+|+||||||||+|+|||.+||+.|+||+|||+|+|++.. .+||..... +... .+......... ...
T Consensus 106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~-~~~~---~~~~i~p~~~~-g~~- 179 (369)
T PRK11670 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQR-PTSP---DGTHMAPIMAH-GLA- 179 (369)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccC-Cccc---CCceeeeeecc-Ccc-
Confidence 3366779999999999999999999999999999999999997754 678764321 1100 11100000000 000
Q ss_pred cCccCcchHHHHHhccCCCchHHHHHHHHHH-HhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhH
Q 023886 105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLK-LVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI 183 (276)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~ 183 (276)
....++.. ...-...+.+......+.+++. .+.+ +||||||||||+.+...+...
T Consensus 180 ~~~~~~l~-~~~~~~i~~g~~~~~~l~~~l~~~~~~-~yDyvIID~PPg~gd~~l~~~---------------------- 235 (369)
T PRK11670 180 TNSIGYLV-TDDNAMVWRGPMASKALMQMLQETLWP-DLDYLVLDMPPGTGDIQLTLA---------------------- 235 (369)
T ss_pred cccHHHhc-CcCcceeecCcchHHHHHHHHHHHhhc-cCCEEEEeCCCCCchHHHHHh----------------------
Confidence 00000000 0000001112122335666664 4554 899999999998553211000
Q ss_pred hhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccc
Q 023886 184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (276)
Q Consensus 184 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~ 263 (276)
. -...+.+++|++|+..++.++.+.++.+++.++++.|+|+||+
T Consensus 236 ----~--------------------------------l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~ 279 (369)
T PRK11670 236 ----Q--------------------------------NIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMS 279 (369)
T ss_pred ----h--------------------------------hccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCC
Confidence 0 0013678999999999999999999999999999999999998
Q ss_pred c
Q 023886 264 L 264 (276)
Q Consensus 264 ~ 264 (276)
.
T Consensus 280 ~ 280 (369)
T PRK11670 280 M 280 (369)
T ss_pred c
Confidence 4
No 10
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.93 E-value=6.2e-25 Score=178.49 Aligned_cols=133 Identities=20% Similarity=0.253 Sum_probs=101.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCccC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEG 109 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 109 (276)
|+|+|+||||||||+|+|||.++|+.|+||+|||+|+|++....+. ..
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~-------------~~------------------- 49 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMW-------------RG------------------- 49 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHH-------------hC-------------------
Confidence 6799999999999999999999999999999999999986332220 00
Q ss_pred cchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhh
Q 023886 110 MDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRL 189 (276)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~ 189 (276)
+ .....++.+++.+...+||||||||||+.+.......
T Consensus 50 ------------~--~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~---------------------------- 87 (169)
T cd02037 50 ------------P--MKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLA---------------------------- 87 (169)
T ss_pred ------------c--chHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHH----------------------------
Confidence 0 0012345566655434899999999998442211100
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886 190 FGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD 266 (276)
Q Consensus 190 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~ 266 (276)
.....+.+++|++|+..++.++.++++.+++.+.++.|+|+||+.+.
T Consensus 88 ------------------------------~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 88 ------------------------------QSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred ------------------------------hccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 00134679999999999999999999999999999999999999753
No 11
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.92 E-value=1.5e-24 Score=198.60 Aligned_cols=133 Identities=22% Similarity=0.129 Sum_probs=86.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCC----CcceeccCC------Cceee-ec
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTK----TPTLVNGFS------NLYAM-EV 96 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~----~~~~~~~~~------~l~~~-~~ 96 (276)
..|+|+|.||||||||+|+|||..||..|+|||+||+|||++++.+||..... ..++.+.+. .+... ..
T Consensus 122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~~i~~ 201 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDVIRP 201 (405)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHcCCCccccccccccHHHHHhccccCCCHHHheec
Confidence 56679999999999999999999999999999999999999999999875432 112211110 00000 00
Q ss_pred CCcccccc-cCccCcchHHHHHh----cc-CCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh
Q 023886 97 DPSVEEET-GSTEGMDSLFSELA----NA-IPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF 161 (276)
Q Consensus 97 ~~~~~~~~-~~~~~~~~~~~~~~----~~-~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i 161 (276)
.....+++ |++..+..++..+. .. .........|++.++.+.+ +||||||||||+++.++.+++
T Consensus 202 t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~~-~yD~IiIDtpP~l~~~t~~al 271 (405)
T PRK13869 202 TYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVAD-DYDVVVIDCPPQLGFLTLSGL 271 (405)
T ss_pred cCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhhc-cCCEEEEECCCchhHHHHHHH
Confidence 00011222 44444433332221 00 1111122467888998886 899999999999998887775
No 12
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.92 E-value=8.7e-25 Score=182.91 Aligned_cols=192 Identities=16% Similarity=0.170 Sum_probs=122.7
Q ss_pred hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh-hHHhccccCCCcceeccC
Q 023886 10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL-SDAFQQRFTKTPTLVNGF 88 (276)
Q Consensus 10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l-~~~l~~~~~~~~~~~~~~ 88 (276)
|.|+.+|.++.....+ ++.|+|+|+|||+||||+|+|||.++|+.|+|||+||+|++.+. +..++.... ..+..+.+
T Consensus 1 ~~~~~l~~~l~~~~~~-~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~-~~~l~~~l 78 (204)
T TIGR01007 1 EYYNAIRTNIQFSGAE-IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNK-ITGLTNFL 78 (204)
T ss_pred ChHHHHHHHHhhhcCC-CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCC-CCCHHHHh
Confidence 5688899998855533 67777999999999999999999999999999999999998654 445554321 11111111
Q ss_pred CCceeeecCCcccccccCccCcchHHHHHhccCC-CchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHH
Q 023886 89 SNLYAMEVDPSVEEETGSTEGMDSLFSELANAIP-GIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEK 167 (276)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~ 167 (276)
.+ .......+......++..++.......+ .......+.++++.+++ +||||||||||.........
T Consensus 79 ~~----~~~l~~~i~~~~~~~l~~l~~g~~~~~~~~~l~~~~l~~~l~~l~~-~yD~ViiD~pp~~~~~~~~~------- 146 (204)
T TIGR01007 79 SG----TTDLSDAICDTNIENLFVITSGPVPPNPTELLQSSNFKTLIETLRK-YFDYIIIDTPPIGTVTDAAI------- 146 (204)
T ss_pred cC----CCCHHHhcccCCCCCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHHh-cCCEEEEeCCCccccchHHH-------
Confidence 00 0000000000000111111100000000 00112357888898986 99999999999421100000
Q ss_pred HHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHH
Q 023886 168 GLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQE 247 (276)
Q Consensus 168 ~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~ 247 (276)
+ -...+.+++|+.|+..+..++.+..+.
T Consensus 147 ---------------------------------------------------~-~~~~D~vilV~~~~~~~~~~~~~~~~~ 174 (204)
T TIGR01007 147 ---------------------------------------------------I-ARACDASILVTDAGEIKKRDVQKAKEQ 174 (204)
T ss_pred ---------------------------------------------------H-HHhCCeEEEEEECCCCCHHHHHHHHHH
Confidence 0 012367999999999999999999999
Q ss_pred HhhCCCCcCeEEEccccCCC
Q 023886 248 LTKFEIDTHNIIINQVLYDD 267 (276)
Q Consensus 248 l~~~~~~~~g~vvN~~~~~~ 267 (276)
+++.+.++.|+|+|++....
T Consensus 175 l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 175 LEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred HHhCCCCEEEEEEeCccccc
Confidence 99999999999999987654
No 13
>CHL00175 minD septum-site determining protein; Validated
Probab=99.92 E-value=1.1e-24 Score=191.14 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=113.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCC---ceeeecCCc--cc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSN---LYAMEVDPS--VE 101 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~---l~~~~~~~~--~~ 101 (276)
+.|+|+|+||||||||+|+|||.+|++.|+||++||+|+| ++++..||........+.+.+.+ +....+... ..
T Consensus 16 ~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~~~~~~ 95 (281)
T CHL00175 16 RIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRDKRWKN 95 (281)
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeecCCCCC
Confidence 5667999999999999999999999999999999999997 88998888763222121111111 100000000 01
Q ss_pred ccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 023886 102 EET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFG 180 (276)
Q Consensus 102 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~ 180 (276)
+++ +....... .. .....+.++++.+++.+||||||||||+++.....++
T Consensus 96 l~~l~~~~~~~~-------~~---~~~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~~~~~l------------------- 146 (281)
T CHL00175 96 LSLLAISKNRQR-------YN---VTRKNMNMLVDSLKNRGYDYILIDCPAGIDVGFINAI------------------- 146 (281)
T ss_pred eEEEeCCCchhh-------cc---CCHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHH-------------------
Confidence 111 11111000 00 0122477888888643799999999998654432222
Q ss_pred hhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEE
Q 023886 181 GMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIII 260 (276)
Q Consensus 181 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vv 260 (276)
. ..+.+++|++|+..+++.+.++.+.+++.+....++|+
T Consensus 147 ----------------------------------------~-~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvv 185 (281)
T CHL00175 147 ----------------------------------------A-PAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLV 185 (281)
T ss_pred ----------------------------------------H-hcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEE
Confidence 0 12568999999999999999999999998888789999
Q ss_pred ccccCC
Q 023886 261 NQVLYD 266 (276)
Q Consensus 261 N~~~~~ 266 (276)
|++.+.
T Consensus 186 N~~~~~ 191 (281)
T CHL00175 186 NRVRPD 191 (281)
T ss_pred eccChh
Confidence 999654
No 14
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.92 E-value=2.2e-24 Score=182.15 Aligned_cols=177 Identities=45% Similarity=0.653 Sum_probs=121.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC--------hhHHhccccCCCcceeccCCCceeeecCCccc
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN--------LSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVE 101 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~--------l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 101 (276)
+++++||||+||||+++++|..+|+.|+||++||+|++.+ ++..++....... .+....+......
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~------~~~~~~~~~~~~~ 74 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIA------PNLYREEVDATRR 74 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHH------HHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999884 3334332100000 0000000000000
Q ss_pred ccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 023886 102 EETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181 (276)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~ 181 (276)
. ..................|+..+...+.++++.+++.+||||||||||+.+.++.+.+
T Consensus 75 ~-~~~~~~~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~~-------------------- 133 (217)
T cd02035 75 V-ERAWGGEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVR-------------------- 133 (217)
T ss_pred h-hhcccchhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHHHH--------------------
Confidence 0 0000000111122334567888888899999999873499999999998655543321
Q ss_pred hHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEc
Q 023886 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN 261 (276)
Q Consensus 182 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN 261 (276)
+.+.++..+.+++|+.|+..+++++.++++.+++.++++.|+|+|
T Consensus 134 -----------------------------------~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN 178 (217)
T cd02035 134 -----------------------------------ELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVN 178 (217)
T ss_pred -----------------------------------HHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEe
Confidence 122355568899999999999999999999999999999999999
Q ss_pred cccCCCC
Q 023886 262 QVLYDDE 268 (276)
Q Consensus 262 ~~~~~~~ 268 (276)
++.++..
T Consensus 179 ~~~~~~~ 185 (217)
T cd02035 179 RVLPAEV 185 (217)
T ss_pred CCcCccc
Confidence 9987654
No 15
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.92 E-value=6.6e-25 Score=199.37 Aligned_cols=209 Identities=16% Similarity=0.125 Sum_probs=121.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec-CCCCChhHHhccccCCC----cceeccCCC---ceeeecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST-DPAHNLSDAFQQRFTKT----PTLVNGFSN---LYAMEVDP 98 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~-D~~~~l~~~l~~~~~~~----~~~~~~~~~---l~~~~~~~ 98 (276)
...|+|+|.||||||||+|+|||..||.+|+|||+||+ |||++++.+||..+... .+..+.+.+ .....+.+
T Consensus 106 ~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~i~~ 185 (387)
T PHA02519 106 PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASMYHGYVPDLHIHADDTLLPFYLGERDNAEYAIKP 185 (387)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcccccCcCccccccccccHHHHHhCCCcchHhheec
Confidence 35666999999999999999999999999999999996 99999999998754211 111110000 00000001
Q ss_pred --cccccc-cCccCcchHHHHHhccCC-C---chHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh--------HH
Q 023886 99 --SVEEET-GSTEGMDSLFSELANAIP-G---IDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF--------PS 163 (276)
Q Consensus 99 --~~~~~~-~~~~~~~~~~~~~~~~~~-~---~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i--------p~ 163 (276)
...+++ |++..+..++..+..... + ......|++.++.+.. +||||||||||+++.++.+++ |.
T Consensus 186 t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~~-~YD~IlID~pPslg~lt~nAL~AAd~vliPv 264 (387)
T PHA02519 186 TCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVWD-NYDIIVIDSAPNLGTGTINVVCAADVIVVAT 264 (387)
T ss_pred CCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhhc-cCCEEEEECCCCccHHHHHHHHHhCEEEEec
Confidence 111233 554444444433322110 0 1123567888898886 899999999999999998775 44
Q ss_pred HHH----HHHHHHHHHHHHHhhhH-----hhhhhhcCCCCCcchHHHH-HH-HHHHHHHHHHHHHhhcCCCCeEEEEEec
Q 023886 164 TLE----KGLDKMMSLKNKFGGMI-----NQMTRLFGIDDEFGEDALL-GR-LEGMKDVIERVNKQFKDPDLTTFVCVCI 232 (276)
Q Consensus 164 ~~~----~~l~~l~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~i~V~~ 232 (276)
..+ .++.++++....+...+ ++..+++ + +++ .+ ....+++.+.+++.|++..+.+. +
T Consensus 265 ~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il-----~---t~~~~~~~~~~~~i~~~l~~~~g~~vl~~~----I 332 (387)
T PHA02519 265 PAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLL-----L---TKYSLTVGNQSRWMEEQIRNTWGSMVLRQV----V 332 (387)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEE-----E---eeECCCCchHHHHHHHHHHHHhcccccccc----C
Confidence 443 23333333333322111 1111111 1 233 22 23445577889999998765544 3
Q ss_pred CCcccHHHHHHHHHHH
Q 023886 233 PEFLSLYETERLVQEL 248 (276)
Q Consensus 233 p~~~~~~ea~~~~~~l 248 (276)
+....+.+|....+.+
T Consensus 333 ~~s~~i~~a~~~~~ti 348 (387)
T PHA02519 333 RVTDEVGKGQIKMRTV 348 (387)
T ss_pred cCcchHhhchhcCCCh
Confidence 4445555554443333
No 16
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.92 E-value=8.2e-25 Score=178.07 Aligned_cols=174 Identities=20% Similarity=0.193 Sum_probs=116.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeeecCCcccc-ccc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ETG 105 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 105 (276)
..|+++||||||||||+++|++.+||+.|+||++||+|.. .|+...+|.+....+..++.++ .++..+... .-.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~----g~~~l~QALIkDK 78 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIE----GEATLNQALIKDK 78 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhc----CccchhhHhhccc
Confidence 4567999999999999999999999999999999999985 7899999987654333333222 122222221 001
Q ss_pred CccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhh
Q 023886 106 STEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQ 185 (276)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~ 185 (276)
....+..++..-.... ......-+.+++++++..+|||||+|||+++..-..+++
T Consensus 79 r~~nL~lLPAsQtrdK-dalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~~A~------------------------ 133 (272)
T COG2894 79 RLENLFLLPASQTRDK-DALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFKNAV------------------------ 133 (272)
T ss_pred cCCceEecccccccCc-ccCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHHHhhh------------------------
Confidence 1111211221111100 011223567888888855899999999998543322222
Q ss_pred hhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCC----CCc---CeE
Q 023886 186 MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE----IDT---HNI 258 (276)
Q Consensus 186 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~----~~~---~g~ 258 (276)
...+..++||+||..+++++.|.+.-|+..+ ..- ..+
T Consensus 134 ------------------------------------~~Ad~AiVVtnPEvSsVRDsDRiiGlLesk~~rae~~~~~~~~l 177 (272)
T COG2894 134 ------------------------------------YFADEAIVVTNPEVSSVRDSDRIIGLLESKSRRAEIGEEPKEHL 177 (272)
T ss_pred ------------------------------------hccceEEEEcCCCccccccchhheeehhcccchhhcCCcccceE
Confidence 0135689999999999999999999998765 322 589
Q ss_pred EEccccCC
Q 023886 259 IINQVLYD 266 (276)
Q Consensus 259 vvN~~~~~ 266 (276)
++||+.|+
T Consensus 178 lvnR~~p~ 185 (272)
T COG2894 178 LLNRYRPE 185 (272)
T ss_pred EEEccCHH
Confidence 99998764
No 17
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.92 E-value=2.3e-24 Score=180.78 Aligned_cols=188 Identities=14% Similarity=0.117 Sum_probs=120.9
Q ss_pred chhhhccccccchhhhh----cC-CceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCC-ChhHHhccccC
Q 023886 7 DQDQELEIPEGSVRNIL----EQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAH-NLSDAFQQRFT 79 (276)
Q Consensus 7 ~~~~~~~~~~~~l~~~~----~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~-~l~~~l~~~~~ 79 (276)
..+++|+.||..+.... .+ ..+.|+|+|+|||+||||+|+|||.+||+ .|+||||||+|++. +++..++.+..
T Consensus 10 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~ 89 (207)
T TIGR03018 10 RIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAE 89 (207)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCC
Confidence 46788999999887654 33 34556699999999999999999999997 69999999999985 67777776533
Q ss_pred CCcceeccCCCceeeecCCcccccccCccCcchHHHHHhccCCC-chHHHHHHHHHHHhccCCC--cEEEEcCCCchhHH
Q 023886 80 KTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPG-IDEAMSFAEMLKLVQTMDY--SCIVFDTAPTGHTL 156 (276)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~y--D~IiiD~pp~~~~l 156 (276)
. .+.+.+.+- ..+....+.-....++..++.......+. ......+.++++.+++ +| |||||||||..+..
T Consensus 90 ~--~l~~~l~~~---~~~l~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~l~~~l~~l~~-~y~~D~IiiD~pp~~~~~ 163 (207)
T TIGR03018 90 P--GLSDCLLDP---VLDLADVLVPTNIGRLSLLPAGRRHPNPTELLASQRMRSLLHELAR-RYPDRIIIIDTPPLLVFS 163 (207)
T ss_pred C--CHHHHHcCC---CCCHHHHhccCCCCCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHHh-hCCCCEEEEECCCCcchh
Confidence 1 111111000 00000000000001111111100000000 0112467889999986 78 99999999985422
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcc
Q 023886 157 RLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFL 236 (276)
Q Consensus 157 ~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~ 236 (276)
....+. ...+.+++|+.|+..
T Consensus 164 ~~~~l~-----------------------------------------------------------~~aD~viiV~~~~~~ 184 (207)
T TIGR03018 164 EARALA-----------------------------------------------------------RLVGQIVLVVEEGRT 184 (207)
T ss_pred HHHHHH-----------------------------------------------------------HhCCEEEEEEECCCC
Confidence 111110 013679999999999
Q ss_pred cHHHHHHHHHHHhhCCCCcCeEEEc
Q 023886 237 SLYETERLVQELTKFEIDTHNIIIN 261 (276)
Q Consensus 237 ~~~ea~~~~~~l~~~~~~~~g~vvN 261 (276)
+...+.+.++.++ +.++.|+|+|
T Consensus 185 ~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 185 TQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CHHHHHHHHHHhc--CCCeEEEEeC
Confidence 9999999999998 7889999998
No 18
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.91 E-value=1.5e-24 Score=186.79 Aligned_cols=167 Identities=19% Similarity=0.227 Sum_probs=111.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCC---ceeeecCCcccccc
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSN---LYAMEVDPSVEEET 104 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~ 104 (276)
.|+|+|+||||||||+|+|||.+|++.|+||++||+|+| ++++.++|.+... .+..+.+.+ +..........+++
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKP-VTLHDVLAGEADIKDAIYEGPFGVKV 80 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCC-CCHHHHhcCCCCHHHheEeCCCCEEE
Confidence 567999999999999999999999999999999999996 6888888765321 111111110 00000000001111
Q ss_pred -cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhH
Q 023886 105 -GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI 183 (276)
Q Consensus 105 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~ 183 (276)
+....+.... . .....+.+.++.+.+ +||||||||||+.+.....++
T Consensus 81 lp~~~~~~~~~----~-----~~~~~l~~~l~~l~~-~yD~VIiD~p~~~~~~~~~~l---------------------- 128 (251)
T TIGR01969 81 IPAGVSLEGLR----K-----ADPDKLEDVLKEIID-DTDFLLIDAPAGLERDAVTAL---------------------- 128 (251)
T ss_pred EeCCCCHHHHh----h-----cCHHHHHHHHHHHHh-hCCEEEEeCCCccCHHHHHHH----------------------
Confidence 2111111110 0 112357788888876 899999999998664433322
Q ss_pred hhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccc
Q 023886 184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (276)
Q Consensus 184 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~ 263 (276)
. ..+.+++|+.|+..++.++.+..+.++..+.++.++|+|++
T Consensus 129 ------------------------------------~--~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~ 170 (251)
T TIGR01969 129 ------------------------------------A--AADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRV 170 (251)
T ss_pred ------------------------------------H--hCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECC
Confidence 0 12558999999999999998888888888998899999998
Q ss_pred cCC
Q 023886 264 LYD 266 (276)
Q Consensus 264 ~~~ 266 (276)
.+.
T Consensus 171 ~~~ 173 (251)
T TIGR01969 171 TRD 173 (251)
T ss_pred Cch
Confidence 653
No 19
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.91 E-value=3.9e-24 Score=194.62 Aligned_cols=214 Identities=17% Similarity=0.099 Sum_probs=120.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec-CCCCChhHHhccccCC----CcceeccCC-C---ce-eee
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST-DPAHNLSDAFQQRFTK----TPTLVNGFS-N---LY-AME 95 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~-D~~~~l~~~l~~~~~~----~~~~~~~~~-~---l~-~~~ 95 (276)
+...|+|+|.||||||||+|+|||.+||..|+|||+||+ |||++++.+||..+.. ..++.+.+. + +. ...
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 184 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDATYAIK 184 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchhhhcCcCccccccccccHHHHHhcCCCchhhhee
Confidence 345667999999999999999999999999999999996 9999999998865321 111111000 0 00 000
Q ss_pred cCCcccccc-cCccCcchHHHHHhccCC----CchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh--------H
Q 023886 96 VDPSVEEET-GSTEGMDSLFSELANAIP----GIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF--------P 162 (276)
Q Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i--------p 162 (276)
......+++ |++..+..++..+..... .......|++.++.++. +||||||||||+++.++.+++ |
T Consensus 185 ~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~~-~YD~IiIDtpP~l~~~t~nal~AaD~viiP 263 (388)
T PRK13705 185 PTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVAH-DYDVIVIDSAPNLGIGTINVVCAADVLIVP 263 (388)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhhc-cCCEEEEECCCchhHHHHHHHHHcCEEEEe
Confidence 000112233 444444444333322110 01123467888888886 899999999999999988775 5
Q ss_pred HHHH----HHHHHHHHHHHHHhhhHhhhhhhcCCCCCcc-hHHHH-HHH-HHHHHHHHHHHHhhcCCCCeEEEEEecCCc
Q 023886 163 STLE----KGLDKMMSLKNKFGGMINQMTRLFGIDDEFG-EDALL-GRL-EGMKDVIERVNKQFKDPDLTTFVCVCIPEF 235 (276)
Q Consensus 163 ~~~~----~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~ 235 (276)
...+ .++.++++....+....+.. |....+. .-+.+ .+. ...+...+.+++.|++..+.+ .++..
T Consensus 264 ~~~~~~s~~g~~~~~~~i~~~~~~~~~~----~~~~~l~il~t~~~~~~~~~~~~~~~~l~~~~~~~vl~~----~I~~s 335 (388)
T PRK13705 264 TPAELFDYTSALQFFDMLRDLLKNVDLK----GFEPDVRILLTKYSNSNGSQSPWMEEQIRDAWGSMVLKN----VVRET 335 (388)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHhhc----cCCCCeEEEEEEecCCCchHHHHHHHHHHHHhccccccc----cCccc
Confidence 5444 23444444443333221110 0000000 01222 222 223446678888888765443 34555
Q ss_pred ccHHHHHHHHHHH
Q 023886 236 LSLYETERLVQEL 248 (276)
Q Consensus 236 ~~~~ea~~~~~~l 248 (276)
..+.++....+.+
T Consensus 336 ~~i~~a~~~~~ti 348 (388)
T PRK13705 336 DEVGKGQIRMRTV 348 (388)
T ss_pred chHhhhhhcCCCc
Confidence 5555554444433
No 20
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.91 E-value=8.6e-24 Score=183.21 Aligned_cols=204 Identities=24% Similarity=0.289 Sum_probs=117.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCcee----eecC-Ccc
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYA----MEVD-PSV 100 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~----~~~~-~~~ 100 (276)
++.|+|+|.||||||||+|.|||.+|| ..|+|||+||+|||++++.++|.+..........+..... .... ...
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTVVIE 81 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchhhHhcCCCcccchhHHHHHhcccccccchhcccCCC
Confidence 356679999999999999999999999 5679999999999999999999875511111111110000 0000 011
Q ss_pred cccc-cCccCcch-HHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh--------HHHHH----
Q 023886 101 EEET-GSTEGMDS-LFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF--------PSTLE---- 166 (276)
Q Consensus 101 ~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i--------p~~~~---- 166 (276)
.+++ |++..+.. ....+. .......++.+++.+.. +||||||||||+++.++.+++ |..++
T Consensus 82 ~ld~ips~~~l~~~~~~~~~----~~~~~~~l~~~~~~~~~-~yD~iiID~pp~l~~l~~nal~asd~vlIP~~~~~~~~ 156 (259)
T COG1192 82 GLDLIPSNIDLAEGAEIELN----AVAKELLLKRLLDPVKD-DYDYIIIDTPPSLGVLTLNALAAADHVLIPVQPEFLDL 156 (259)
T ss_pred CceEecCChHHHhHHHHHHh----hhhHHHHHHHHhhhhcc-CCCEEEECCCCchhHHHHHHHHHcCeeEEecCchHHHH
Confidence 1122 33333331 111111 11233456667766665 899999999999999988774 66665
Q ss_pred HHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHH-HHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHH
Q 023886 167 KGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALL-GRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL 244 (276)
Q Consensus 167 ~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~ 244 (276)
.++..+.+....+.+.........++ . .+++ .+.....+..+.+.+.+.++.+ ...+|....++++...
T Consensus 157 ~~~~~~~~~i~~~~~~~~~~~~~~~i--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~a~~~ 226 (259)
T COG1192 157 EGLEQLLNTLEDLLKLRRNKLIVVGI--L---ITRFDSRTKLADEVLQELKQLLGDPVL----KTKIPRRVAYREAAAE 226 (259)
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEEE--e---eceEcCCcchHHHHHHHHHHHhccccc----cccCcccccHHhHHHc
Confidence 34445444444444321111111111 0 1222 4455666677777777764433 3334566666665443
No 21
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.90 E-value=5.2e-24 Score=209.89 Aligned_cols=195 Identities=13% Similarity=0.094 Sum_probs=132.5
Q ss_pred hhhhccccccchhhhhcCCce-EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCccee
Q 023886 8 QDQELEIPEGSVRNILEQDSL-KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLV 85 (276)
Q Consensus 8 ~~~~~~~~~~~l~~~~~~~~~-~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~ 85 (276)
..|+|+.+++++..+..+.+. .|.|+|.|||+||||+|+|||.++|+.|+||||||+|++ ++++..|+..... .+.
T Consensus 526 ~~Ea~r~lr~~l~~~~~~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~--gl~ 603 (754)
T TIGR01005 526 AEEELRVKEEAVAEAKSVAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVS--GLL 603 (754)
T ss_pred chHHHHHHHHHHhhhccCCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccC--ChH
Confidence 378999999999888765554 555999999999999999999999999999999999998 6789998865321 111
Q ss_pred ccCCCceeeecCCcccccccCccCcchHHHHHhccCC-CchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHH
Q 023886 86 NGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIP-GIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPST 164 (276)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~ 164 (276)
+.+.+ .......+......++..++.......| .......+.++++.+++ +||||||||||..+..+...+
T Consensus 604 ~~l~~----~~~~~~~i~~~~~~~l~~l~~g~~~~~~~~ll~~~~~~~~l~~l~~-~yD~IiID~pp~~~~~d~~~l--- 675 (754)
T TIGR01005 604 DLLAG----LRSLLLDLTASGAASLPMLDSGLFPHGITELLASPAMFSLVIHARL-YSDCVVVDVGTADPVRDMRAA--- 675 (754)
T ss_pred HHHcC----CccHHHHhccCCCCCeeEecCCCCCCCHHHHhccHHHHHHHHHHHh-hCCEEEEcCCCcchhHHHHHh---
Confidence 11100 0000000000001111111111000000 00112356788888886 999999999998664443332
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHH
Q 023886 165 LEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL 244 (276)
Q Consensus 165 ~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~ 244 (276)
....+.+++|+.++.++.....+.
T Consensus 676 --------------------------------------------------------~~~~D~vl~v~~~~~~~~~~~~~~ 699 (754)
T TIGR01005 676 --------------------------------------------------------ARLAIIMLLVTAYDRVVVECGRAD 699 (754)
T ss_pred --------------------------------------------------------hhhCCeEEEEEEeCceeHHHHHHH
Confidence 112366889999999999999999
Q ss_pred HHHHhhCCCCcCeEEEccccCCCC
Q 023886 245 VQELTKFEIDTHNIIINQVLYDDE 268 (276)
Q Consensus 245 ~~~l~~~~~~~~g~vvN~~~~~~~ 268 (276)
++.++..+.++.|+|+|++.+...
T Consensus 700 ~~~l~~~~~~~~GvvlN~~~~~~~ 723 (754)
T TIGR01005 700 AQGISRLNGEVTGVFLNMLDPNDE 723 (754)
T ss_pred HHHHHhcCCceEEEEecCCChhhh
Confidence 999999999999999999865543
No 22
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.90 E-value=2.5e-23 Score=180.06 Aligned_cols=173 Identities=18% Similarity=0.209 Sum_probs=112.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeeecCCcccc-ccc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ETG 105 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 105 (276)
+.|+|+|+||||||||+|+|||.+|++.|+||++||+|+| ++++..||.+.....+..+...+- ......+ ...
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~----~~~~~~i~~~~ 77 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGE----CRLQQALIKDK 77 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCc----CcHHHHhhcCC
Confidence 4677999999999999999999999999999999999997 788888876532211111111110 0000000 000
Q ss_pred CccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhh
Q 023886 106 STEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQ 185 (276)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~ 185 (276)
...++..++...... ........+.++++.+++ +||||||||||+.+.....++
T Consensus 78 ~~~~l~~l~~~~~~~-~~~~~~~~l~~~l~~l~~-~~D~viiD~p~~~~~~~~~~l------------------------ 131 (261)
T TIGR01968 78 RLKNLYLLPASQTRD-KDAVTPEQMKKLVNELKE-EFDYVIIDCPAGIESGFRNAV------------------------ 131 (261)
T ss_pred CCCCeEEEeCCCchh-hhhCCHHHHHHHHHHHHH-hCCEEEEeCCCCcCHHHHHHH------------------------
Confidence 001111111100000 000112357788888886 899999999998654322221
Q ss_pred hhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886 186 MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY 265 (276)
Q Consensus 186 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~ 265 (276)
...+.+++|+.|+..++..+.++++.+++.+....++|+|++.+
T Consensus 132 ------------------------------------~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 132 ------------------------------------APADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred ------------------------------------HhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 01256899999999999999999999998887778999999865
Q ss_pred C
Q 023886 266 D 266 (276)
Q Consensus 266 ~ 266 (276)
.
T Consensus 176 ~ 176 (261)
T TIGR01968 176 E 176 (261)
T ss_pred h
Confidence 3
No 23
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.90 E-value=1.6e-23 Score=182.89 Aligned_cols=171 Identities=18% Similarity=0.219 Sum_probs=102.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHh-ccccCCCcceeccCCC-----cee--eecCCc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF-QQRFTKTPTLVNGFSN-----LYA--MEVDPS 99 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l-~~~~~~~~~~~~~~~~-----l~~--~~~~~~ 99 (276)
++|+|+ |||||||||+|+|||.+||++|+||++||+|||++.+..+ |... ..++.+.+.+ ... ......
T Consensus 2 ~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~--~~~~~d~l~~~~~~~~~~~~~i~~~~ 78 (273)
T PRK13232 2 RQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLN--QKTVLDTLRSEGDEGVDLDVVMQPGF 78 (273)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCC--CCcHHHHHHhcCCCCCCHHHEEEeCC
Confidence 456688 9999999999999999999999999999999999988876 4321 1222211110 000 000000
Q ss_pred ccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHH
Q 023886 100 VEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNK 178 (276)
Q Consensus 100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~ 178 (276)
..+++ ++...... ......+......|.+.++.+.. +|||||||||+... ...+..|..
T Consensus 79 ~~i~~i~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~-~yD~vlID~~~~~~-~~~~~~~~a-------------- 138 (273)
T PRK13232 79 GDIKCVESGGPEPG----VGCAGRGIITSIGLLENLGAYTD-DLDYVFYDVLGDVV-CGGFAMPIR-------------- 138 (273)
T ss_pred CCeEEEeCCCCCCC----CCCCCCchhHHHHHHHHcccccc-cCCEEEEecCCCee-ECCEecccc--------------
Confidence 01111 11110000 00011111111246677777775 89999999987631 000000000
Q ss_pred HhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhh---CCCCc
Q 023886 179 FGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK---FEIDT 255 (276)
Q Consensus 179 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~---~~~~~ 255 (276)
-...+.+++|++|+..++..+.++.+.++. .++++
T Consensus 139 ------------------------------------------l~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~ 176 (273)
T PRK13232 139 ------------------------------------------EGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARL 176 (273)
T ss_pred ------------------------------------------ccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCce
Confidence 012367899999999999999888888875 36778
Q ss_pred CeEEEccc
Q 023886 256 HNIIINQV 263 (276)
Q Consensus 256 ~g~vvN~~ 263 (276)
.|+|+|+.
T Consensus 177 ~GiV~n~~ 184 (273)
T PRK13232 177 GGIICNSR 184 (273)
T ss_pred eEEEEeCC
Confidence 89999976
No 24
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.90 E-value=2.9e-23 Score=174.76 Aligned_cols=173 Identities=21% Similarity=0.258 Sum_probs=101.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHh-ccccCCCcceeccCC--------CceeeecCCc
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF-QQRFTKTPTLVNGFS--------NLYAMEVDPS 99 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l-~~~~~~~~~~~~~~~--------~l~~~~~~~~ 99 (276)
+|+++ |||||||||+|+|||.+||+.|+|||+||+|||++.+..+ +.+. ..+..+.+. .+........
T Consensus 2 ~iav~-gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T cd02117 2 QIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKA--PTTILELAAEDGHVEDLELEDVIFEGF 78 (212)
T ss_pred EEEEE-CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCC--CCCHHHHHhhhCCcCCcChhHeeEeCC
Confidence 35666 6999999999999999999999999999999999887666 3321 111111110 0000000000
Q ss_pred ccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHH
Q 023886 100 VEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNK 178 (276)
Q Consensus 100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~ 178 (276)
..+++ +++..+.... ...++......+.+.++.+.+ +||||||||++.+. ..++
T Consensus 79 ~~l~vlp~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~-~yD~ilID~~g~~~---~~~~----------------- 133 (212)
T cd02117 79 GGVKCVESGGPEPGVG----CAGRGVITAVNLLEKEGFAED-DLDVVLYDVLGDVV---CGGF----------------- 133 (212)
T ss_pred CCcEEEeCCCCCCCcc----cCCcchhhHHHHHHhcccccc-CCCEEEEecCCCce---eccc-----------------
Confidence 11111 2211111110 001111111122225566665 89999999976421 0000
Q ss_pred HhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhC----CCC
Q 023886 179 FGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF----EID 254 (276)
Q Consensus 179 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~----~~~ 254 (276)
.. .+ .....+.+++|+.|+..+++.+.++.+.++.. +.+
T Consensus 134 --------~~------~l-----------------------~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~ 176 (212)
T cd02117 134 --------AM------PI-----------------------REGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVR 176 (212)
T ss_pred --------cc------cc-----------------------ccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCc
Confidence 00 00 00124678999999999999998888888764 667
Q ss_pred cCeEEEccccCC
Q 023886 255 THNIIINQVLYD 266 (276)
Q Consensus 255 ~~g~vvN~~~~~ 266 (276)
+.|+|+||+.+.
T Consensus 177 ~~gvv~N~~~~~ 188 (212)
T cd02117 177 LGGLICNSRNTD 188 (212)
T ss_pred EEEEEEeCCCCc
Confidence 889999999653
No 25
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.90 E-value=5.7e-23 Score=176.52 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=76.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCC---CceeeecCCcccccc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFS---NLYAMEVDPSVEEET 104 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~ 104 (276)
+.|+|+|+||||||||+|+|||.+||++|+|||+||+|+|++++..+|.+........+.+. .+..........+++
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 81 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGVLF 81 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCeEE
Confidence 45679999999999999999999999999999999999999999999865432111111000 000000000011111
Q ss_pred -cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhh
Q 023886 105 -GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ 160 (276)
Q Consensus 105 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ 160 (276)
+... .......... + .....++++++.++...||||||||||+.+.+...+
T Consensus 82 ip~~~-~~~~~~~~~~--~--~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~~~~~ 133 (246)
T TIGR03371 82 LPFGD-LSADEREAYQ--A--HDAGWLARLLQQLDLAARDWVLIDVPRGPSPITRQA 133 (246)
T ss_pred ecCCC-CcHHHHHHHh--h--cCHHHHHHHHHhcccCCCCEEEEECCCCchHHHHHH
Confidence 1111 0000000000 0 012346778888875347999999999866554433
No 26
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.90 E-value=2e-23 Score=179.57 Aligned_cols=168 Identities=26% Similarity=0.296 Sum_probs=117.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeeecCCccc----
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVE---- 101 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~---- 101 (276)
+.|+|+||||||||||+|+||+..++ ..|++|++||+|+. +|++..||....... +.+.+.+ +....+.
T Consensus 3 ~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~-l~dvL~~----~~~~~Di~~~~ 77 (262)
T COG0455 3 KVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTT-LHDVLAG----EASIEDIIYET 77 (262)
T ss_pred EEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCccc-HHHHHhC----CCCHhHeeeec
Confidence 56789999999999999999955555 56778899999985 789999998764221 2221111 1111111
Q ss_pred ----ccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHH
Q 023886 102 ----EET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLK 176 (276)
Q Consensus 102 ----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~ 176 (276)
+++ ++..+...+ ... ....+..+++.+.. .|||||+||||+++.-++..+
T Consensus 78 ~~~gl~vipg~~~~~~~----~~~-----~~~~~~~~~~~l~~-~~D~iliD~~aGl~~~~~~~~--------------- 132 (262)
T COG0455 78 PQDGLYVLPGGSGLEDL----AKL-----DPEDLEDVIKELEE-LYDYILIDTGAGLSRDTLSFI--------------- 132 (262)
T ss_pred CcCCEEEeeCCCChHHH----hhc-----CHHHHHHHHHHHHh-cCCEEEEeCCCCccHHHHHHH---------------
Confidence 111 332232222 111 12356788888886 899999999999664433222
Q ss_pred HHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcC
Q 023886 177 NKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTH 256 (276)
Q Consensus 177 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~ 256 (276)
- ..+.+++|++|+..++.+|....+.+...++...
T Consensus 133 --------------------------------------------~-~sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~ 167 (262)
T COG0455 133 --------------------------------------------L-SSDELVIVTTPEPTSITDAYKTIKILSKLGLDLL 167 (262)
T ss_pred --------------------------------------------H-hcCcEEEEeCCCcchHHHHHHHHHHHHHcCCccc
Confidence 0 1267999999999999999999999999999998
Q ss_pred e--EEEccccCCCCCC
Q 023886 257 N--IIINQVLYDDEGM 270 (276)
Q Consensus 257 g--~vvN~~~~~~~~~ 270 (276)
+ +|+|++.+..+..
T Consensus 168 ~~~vV~N~v~~~~e~~ 183 (262)
T COG0455 168 GRRVVLNRVRSTKEGV 183 (262)
T ss_pred cceEEEEecccccchh
Confidence 8 9999997655543
No 27
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.90 E-value=2.1e-23 Score=190.59 Aligned_cols=134 Identities=24% Similarity=0.160 Sum_probs=83.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCC----CcceeccCC------Cceeeec
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTK----TPTLVNGFS------NLYAMEV 96 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~----~~~~~~~~~------~l~~~~~ 96 (276)
...|+|+|.||||||||+|+|||.+||+.|+|||+||+|||++++.+||..... ..++.+.+. .+...-.
T Consensus 104 ~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 183 (387)
T TIGR03453 104 LQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQASLSALFGYQPEFDVGENETLYGAIRYDDERRPLSEIIR 183 (387)
T ss_pred ceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHcCCCcccccccCccHHHHHhccccccCHHhhcc
Confidence 356679999999999999999999999999999999999999999999865431 111111100 0000000
Q ss_pred -CCcccccc-cCccCcchHHHHHh----ccCC-CchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh
Q 023886 97 -DPSVEEET-GSTEGMDSLFSELA----NAIP-GIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF 161 (276)
Q Consensus 97 -~~~~~~~~-~~~~~~~~~~~~~~----~~~~-~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i 161 (276)
.....+++ |++..+..+..... .... .......|.+.++.+.+ +||||||||||+++.++.+++
T Consensus 184 ~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~-~yD~IiiD~pp~~~~~~~~al 254 (387)
T TIGR03453 184 KTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVED-DYDVVVIDCPPQLGFLTLSAL 254 (387)
T ss_pred cCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHh-cCCEEEEeCCccHhHHHHHHH
Confidence 00011122 33333322222111 1000 01112457888888886 899999999999988877665
No 28
>PHA02518 ParA-like protein; Provisional
Probab=99.90 E-value=9.6e-23 Score=171.03 Aligned_cols=94 Identities=26% Similarity=0.270 Sum_probs=68.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCcc
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTE 108 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 108 (276)
.|+|+|.||||||||+|+|||.+|+++|+||++||+|||++++.+++...... . .+ +.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~~~~--------~----------~i--~~-- 59 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGE--------P----------LI--PV-- 59 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhcccCC--------C----------CC--ch--
Confidence 56799999999999999999999999999999999999999998876432100 0 00 00
Q ss_pred CcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhh
Q 023886 109 GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ 160 (276)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ 160 (276)
. .....+.+.+..+.. .||||||||||+.+.+...+
T Consensus 60 ----~-----------~~~~~~~~~l~~~~~-~~d~viiD~p~~~~~~~~~~ 95 (211)
T PHA02518 60 ----V-----------RMGKSIRADLPKVAS-GYDYVVVDGAPQDSELARAA 95 (211)
T ss_pred ----h-----------hccHHHHHHHHHHhc-cCCEEEEeCCCCccHHHHHH
Confidence 0 000134555666665 89999999999876554433
No 29
>PRK11519 tyrosine kinase; Provisional
Probab=99.90 E-value=2.1e-23 Score=203.91 Aligned_cols=193 Identities=16% Similarity=0.177 Sum_probs=131.7
Q ss_pred hhhhccccccchhhhhc-CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCccee
Q 023886 8 QDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLV 85 (276)
Q Consensus 8 ~~~~~~~~~~~l~~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~ 85 (276)
.+|+|+.+|++|..... .+...|+|+|.+||+||||+|.|||..+|..|+||||||+|++ ++++..|+.... ..+.
T Consensus 506 ~~Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~--~gl~ 583 (719)
T PRK11519 506 AIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNV--NGLS 583 (719)
T ss_pred HHHHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCC--CCHH
Confidence 46899999999988654 4445666999999999999999999999999999999999987 557888876532 1111
Q ss_pred ccCCCceeeecCCcccccccCccCcchHHHHHhccCC-CchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHH
Q 023886 86 NGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIP-GIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPST 164 (276)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~ 164 (276)
+.+.+ ..+....+.-....++..++.......| ......+|.++++.++. +||||||||||.+...+...+
T Consensus 584 ~~l~~----~~~l~~~i~~~~~~~l~~lp~g~~~~~~~ell~s~~~~~ll~~l~~-~yD~ViiDtpP~~~v~Da~~l--- 655 (719)
T PRK11519 584 DILIG----QGDITTAAKPTSIANFDLIPRGQVPPNPSELLMSERFAELVNWASK-NYDLVLIDTPPILAVTDAAIV--- 655 (719)
T ss_pred HHhCC----CCCHHHhecccCcCCEEEEeCCCCCCCHHHHhhHHHHHHHHHHHHh-cCCEEEEeCCCcccchHHHHH---
Confidence 11110 0010111100001122222211110011 11234578999999986 999999999997442221111
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHH
Q 023886 165 LEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL 244 (276)
Q Consensus 165 ~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~ 244 (276)
.+..+.+++|+.++.+...+....
T Consensus 656 --------------------------------------------------------~~~~d~~l~Vvr~~~t~~~~~~~~ 679 (719)
T PRK11519 656 --------------------------------------------------------GRHVGTTLMVARYAVNTLKEVETS 679 (719)
T ss_pred --------------------------------------------------------HHHCCeEEEEEeCCCCCHHHHHHH
Confidence 112467899999999999999999
Q ss_pred HHHHhhCCCCcCeEEEccccCC
Q 023886 245 VQELTKFEIDTHNIIINQVLYD 266 (276)
Q Consensus 245 ~~~l~~~~~~~~g~vvN~~~~~ 266 (276)
.+.+++.++++.|+|+|++...
T Consensus 680 ~~~l~~~~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 680 LSRFEQNGIPVKGVILNSIFRR 701 (719)
T ss_pred HHHHHhCCCCeEEEEEeCCccC
Confidence 9999999999999999999543
No 30
>PRK10037 cell division protein; Provisional
Probab=99.89 E-value=1e-22 Score=175.61 Aligned_cols=129 Identities=17% Similarity=0.173 Sum_probs=78.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccC-C--CceeeecCCcccccc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGF-S--NLYAMEVDPSVEEET 104 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~-~--~l~~~~~~~~~~~~~ 104 (276)
+.|+|.|.||||||||+|+|||..||++|+|||+||+|||++++..||..........+.+ . .+..........+++
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 81 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQLDL 81 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCCccccchHHHHHhcCCCchhhhccccCCeEE
Confidence 3567999999999999999999999999999999999999999998886532211111100 0 000000001111122
Q ss_pred -cCccCcchHHHHHhccCCCchHHHHHHHHHHHhc--cCCCcEEEEcCCCchhHHHhhh
Q 023886 105 -GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQ--TMDYSCIVFDTAPTGHTLRLLQ 160 (276)
Q Consensus 105 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~~yD~IiiD~pp~~~~l~~~~ 160 (276)
|++ .+.......... .......|.+.++.++ + +||||||||||+.+.+...+
T Consensus 82 ip~~-~~~~~~~~~~~~--~~~~~~~l~~~l~~l~~~~-~yD~iiIDtpp~~~~~~~~a 136 (250)
T PRK10037 82 LPFG-QLSIEEQENPQH--WQTRLGDICSALQQLKASG-RYQWILLDLPRGASPLTRQL 136 (250)
T ss_pred EcCC-CCCHHHHHHHHH--HHHhHHHHHHHHHHhcccC-CCCEEEEECCCCccHHHHHH
Confidence 222 121111111000 0011234677888887 5 89999999999987765544
No 31
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.89 E-value=1.6e-22 Score=171.82 Aligned_cols=101 Identities=20% Similarity=0.142 Sum_probs=71.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST 107 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 107 (276)
+.|+|.|.||||||||+|.|||.+++++|+||++||+|||++++.+++...... . ++.. . +.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~~~~~--~---~~~~---------~-~~--- 63 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSN--T---WDPA---------C-EV--- 63 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhhcccc--C---CCcc---------c-ee---
Confidence 466799999999999999999999999999999999999999998886432110 0 0000 0 00
Q ss_pred cCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhh
Q 023886 108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ 160 (276)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ 160 (276)
........+.+.++.+...+||||||||||+.+.+...+
T Consensus 64 --------------~~~~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~a 102 (231)
T PRK13849 64 --------------YAADELPLLEAAYEDAELQGFDYALADTHGGSSELNNTI 102 (231)
T ss_pred --------------cCCCHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHH
Confidence 000112345666666653379999999999887665544
No 32
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.89 E-value=3e-23 Score=202.97 Aligned_cols=194 Identities=16% Similarity=0.145 Sum_probs=129.8
Q ss_pred hhhhccccccchhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCccee
Q 023886 8 QDQELEIPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLV 85 (276)
Q Consensus 8 ~~~~~~~~~~~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~ 85 (276)
.+|+|+.+|++|...... +.+.|+|+|.+||+||||+|.|||.++|..|+||||||+|++ ++++..|+.... ..+.
T Consensus 511 ~~Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~--~gl~ 588 (726)
T PRK09841 511 AVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNE--HGLS 588 (726)
T ss_pred HHHHHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCC--CCHH
Confidence 468999999999886554 445666999999999999999999999999999999999997 567777775432 1111
Q ss_pred ccCCCceeeecCCcccccccCccCcchHHHHHhccCC-CchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHH
Q 023886 86 NGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIP-GIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPST 164 (276)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~ 164 (276)
+.+. ........+.-....++..++.......| .......|.++++.++. +||||||||||.+..-+...+
T Consensus 589 ~~l~----~~~~~~~~i~~~~~~~l~vl~~g~~~~~p~ell~~~~~~~ll~~l~~-~yD~IIIDtPP~~~~~Da~~l--- 660 (726)
T PRK09841 589 EYLA----GKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWAND-HYDLVIVDTPPMLAVSDAAVV--- 660 (726)
T ss_pred HHhC----CCCCHHHheeccCCCCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHHh-cCCEEEEeCCCccccchHHHH---
Confidence 1111 01111111100000111111111000000 01112368889999986 999999999997443211111
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHH
Q 023886 165 LEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL 244 (276)
Q Consensus 165 ~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~ 244 (276)
.+..+.+++|+.++.++..++.+.
T Consensus 661 --------------------------------------------------------a~~ad~~llVvr~~~t~~~~~~~~ 684 (726)
T PRK09841 661 --------------------------------------------------------GRSVGTSLLVARFGLNTAKEVSLS 684 (726)
T ss_pred --------------------------------------------------------HHhCCeEEEEEeCCCCCHHHHHHH
Confidence 112467899999999999999999
Q ss_pred HHHHhhCCCCcCeEEEccccCCC
Q 023886 245 VQELTKFEIDTHNIIINQVLYDD 267 (276)
Q Consensus 245 ~~~l~~~~~~~~g~vvN~~~~~~ 267 (276)
++.+.+.+.++.|+|+|++.+..
T Consensus 685 ~~~l~~~~~~~~G~VlN~~~~~~ 707 (726)
T PRK09841 685 MQRLEQAGVNIKGAILNGVIKRA 707 (726)
T ss_pred HHHHHhCCCceEEEEEeCcccCc
Confidence 99999999999999999996443
No 33
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.89 E-value=5.1e-23 Score=179.26 Aligned_cols=47 Identities=38% Similarity=0.547 Sum_probs=43.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~ 76 (276)
+|+|. |||||||||+|+|||.+||++|+|||+||+|||++++..|+.
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~~ 48 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLTG 48 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceecC
Confidence 45666 899999999999999999999999999999999999988863
No 34
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.89 E-value=4.1e-22 Score=173.72 Aligned_cols=174 Identities=21% Similarity=0.206 Sum_probs=107.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeeecCCcccc-ccc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ETG 105 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 105 (276)
+.|+|+|+||||||||+|+|||..|+++|+||++||+|+| ++++.+||.+........+...+ .......+ ..+
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 78 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQG----DATLNQALIKDK 78 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcC----CCcHHHhccccC
Confidence 4567999999999999999999999999999999999996 78888888754321111111010 00000000 000
Q ss_pred CccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhh
Q 023886 106 STEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQ 185 (276)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~ 185 (276)
...++..++...... ........+.++++.++..+||||||||||+++.....++
T Consensus 79 ~~~~~~~lp~~~~~~-~~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~~~~l------------------------ 133 (270)
T PRK10818 79 RTENLYILPASQTRD-KDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMAL------------------------ 133 (270)
T ss_pred CcCCEEEecCCCCcc-hhhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccHHHHHHH------------------------
Confidence 011111111110000 0001122456777777633799999999999765543332
Q ss_pred hhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhC-------CCCc-Ce
Q 023886 186 MTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF-------EIDT-HN 257 (276)
Q Consensus 186 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~-------~~~~-~g 257 (276)
...+.+++|+.|+..+++.+.++++.+... +.++ .+
T Consensus 134 ------------------------------------~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~ 177 (270)
T PRK10818 134 ------------------------------------YFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEH 177 (270)
T ss_pred ------------------------------------HhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceE
Confidence 013568889999999999999999887632 1122 47
Q ss_pred EEEccccCC
Q 023886 258 IIINQVLYD 266 (276)
Q Consensus 258 ~vvN~~~~~ 266 (276)
+|+|++.+.
T Consensus 178 vv~n~~~~~ 186 (270)
T PRK10818 178 LLLTRYNPG 186 (270)
T ss_pred EEEeccCHh
Confidence 899988654
No 35
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.88 E-value=1.1e-22 Score=177.67 Aligned_cols=47 Identities=30% Similarity=0.449 Sum_probs=43.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~ 75 (276)
++|+|+ +||||||||+|+|||++||++|+|||+||+|||++.+..++
T Consensus 2 ~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~ 48 (274)
T PRK13235 2 RKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLL 48 (274)
T ss_pred CEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCccccccccc
Confidence 356688 89999999999999999999999999999999999888773
No 36
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.88 E-value=1.2e-22 Score=176.83 Aligned_cols=48 Identities=33% Similarity=0.514 Sum_probs=43.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~ 76 (276)
++|+|+ +||||||||+|+|||.+||++|+||++||+|||++++..++.
T Consensus 2 ~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~ 49 (270)
T cd02040 2 RQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLG 49 (270)
T ss_pred cEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcC
Confidence 356677 799999999999999999999999999999999998877753
No 37
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.88 E-value=1.5e-22 Score=176.30 Aligned_cols=47 Identities=40% Similarity=0.539 Sum_probs=42.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~ 76 (276)
+|+|. |||||||||+|+|||++||++|+|||+||+|||++++..++.
T Consensus 2 ~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~ 48 (267)
T cd02032 2 VLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTG 48 (267)
T ss_pred EEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccC
Confidence 45666 799999999999999999999999999999999999888864
No 38
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.88 E-value=1.1e-22 Score=177.75 Aligned_cols=169 Identities=18% Similarity=0.218 Sum_probs=99.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCCChhHH-hccccCCCcceeccCCC-----ceeeecCC--
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAHNLSDA-FQQRFTKTPTLVNGFSN-----LYAMEVDP-- 98 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~~l~~~-l~~~~~~~~~~~~~~~~-----l~~~~~~~-- 98 (276)
+.|+|+ +||||||||+|+|||++||+ .|+|||+||+|||++++.. +|... ..++.+.+.+ .....+-.
T Consensus 3 ~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~--~~~l~~~l~~~~~~~~~~~~~~~~~ 79 (275)
T PRK13233 3 RKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKP--QTTMMDTLRELGEEKVTPDKVIKTG 79 (275)
T ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCC--CCcHHHHHHHhCCCCCCHHHHeeeC
Confidence 455688 89999999999999999997 5999999999999998876 55432 2222221110 00000000
Q ss_pred cccccc-cCccCcchHHHHHhccCCCchHH--HHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHH
Q 023886 99 SVEEET-GSTEGMDSLFSELANAIPGIDEA--MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSL 175 (276)
Q Consensus 99 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~ 175 (276)
...+++ |++..+.. . ..++.... ..+.+.++.+.+ +||||||||++. ++.+++-.
T Consensus 80 ~~~l~~ipa~~~~~~----~--~~~~~~~~~~~~l~~~l~~~~~-~yD~iliD~~~~---~~~~al~~------------ 137 (275)
T PRK13233 80 FKDIRCVESGGPEPG----V--GCAGRGVITAIDLMEENGAYTD-DLDFVFFDVLGD---VVCGGFAM------------ 137 (275)
T ss_pred CCCcEEEECCCCCCC----C--CCCCcchhHHHHHHHHcCCccC-CCCEEEEecCCc---eeeccccc------------
Confidence 011111 22222211 0 01111111 125566666765 899999999653 22222100
Q ss_pred HHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHH----hhC
Q 023886 176 KNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL----TKF 251 (276)
Q Consensus 176 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l----~~~ 251 (276)
. +.+...+.+++++.|+..++..+.++++.+ +..
T Consensus 138 -------------------~-----------------------~~~~aad~viIp~~p~~~sl~g~~~l~~~i~~~~~~~ 175 (275)
T PRK13233 138 -------------------P-----------------------IRDGKAQEVYIVASGEMMAIYAANNICKGLVKYAEQS 175 (275)
T ss_pred -------------------c-----------------------chhccCceEEEeccccHHHHHHHHHHHHHHHHHHhcC
Confidence 0 001124568888888988888888886665 245
Q ss_pred CCCcCeEEEccc
Q 023886 252 EIDTHNIIINQV 263 (276)
Q Consensus 252 ~~~~~g~vvN~~ 263 (276)
++++.|+|+|+.
T Consensus 176 ~l~~~Giv~n~~ 187 (275)
T PRK13233 176 GVRLGGIICNSR 187 (275)
T ss_pred CCceeEEEeeCC
Confidence 777888999864
No 39
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.88 E-value=4.4e-22 Score=174.84 Aligned_cols=46 Identities=41% Similarity=0.549 Sum_probs=41.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhc
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~ 75 (276)
+|+| +|||||||||+|+|||++||+.|+|||+||+|||++++..++
T Consensus 2 ~ia~-~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~ 47 (290)
T CHL00072 2 KLAV-YGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLT 47 (290)
T ss_pred eEEE-ECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCccccccc
Confidence 4444 459999999999999999999999999999999999988773
No 40
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.88 E-value=1e-21 Score=171.26 Aligned_cols=48 Identities=40% Similarity=0.541 Sum_probs=43.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~ 76 (276)
+.|+|. +||||||||+|+|||.+||++|+|||+||+|||++++.+++.
T Consensus 3 ~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~ 50 (270)
T PRK13185 3 LVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTG 50 (270)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcC
Confidence 344566 799999999999999999999999999999999999988874
No 41
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.88 E-value=3.2e-22 Score=175.28 Aligned_cols=48 Identities=33% Similarity=0.565 Sum_probs=43.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~ 76 (276)
.+|+|+ |||||||||+|+|||.+||++|+||||||+|||+|++..|+.
T Consensus 2 ~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~ 49 (279)
T PRK13230 2 RKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVG 49 (279)
T ss_pred cEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccC
Confidence 355666 899999999999999999999999999999999999998864
No 42
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.87 E-value=1.8e-21 Score=159.45 Aligned_cols=155 Identities=21% Similarity=0.274 Sum_probs=99.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeeecCCcccccccCc
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST 107 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 107 (276)
+|+|+|+|||+||||+|+|||.++ +||+|||+|++ ++++.+||.+......... .... ...+... .. .
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~---~~-~ 69 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIV-GGKK--AVIDPEL---CI-S 69 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCcccccccee-cCCc--eEEchhh---hc-c
Confidence 478999999999999999999999 89999999986 6788888876432211000 0000 0000000 00 0
Q ss_pred cCcchHHHHHhccCCCchHHHHHHHHHHHh-ccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhh
Q 023886 108 EGMDSLFSELANAIPGIDEAMSFAEMLKLV-QTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186 (276)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~ 186 (276)
.+.. ......+.+.+..+ ...+||||||||||+.+.....+
T Consensus 70 ~~~~------------~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~-------------------------- 111 (179)
T cd03110 70 CGLC------------GKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIAS-------------------------- 111 (179)
T ss_pred ccch------------HHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHH--------------------------
Confidence 0000 00011222222211 12389999999999854321111
Q ss_pred hhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886 187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD 266 (276)
Q Consensus 187 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~ 266 (276)
+ ...+.+++|+.|+..++.++.+.++.+++.+.++ ++|+|++.+.
T Consensus 112 --------------------------------l--~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~-~vV~N~~~~~ 156 (179)
T cd03110 112 --------------------------------L--TGADAALLVTEPTPSGLHDLERAVELVRHFGIPV-GVVINKYDLN 156 (179)
T ss_pred --------------------------------H--HcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCE-EEEEeCCCCC
Confidence 0 1236789999999999999999999999999876 8999998654
Q ss_pred C
Q 023886 267 D 267 (276)
Q Consensus 267 ~ 267 (276)
.
T Consensus 157 ~ 157 (179)
T cd03110 157 D 157 (179)
T ss_pred c
Confidence 3
No 43
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.87 E-value=1.1e-21 Score=160.23 Aligned_cols=126 Identities=26% Similarity=0.321 Sum_probs=95.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeeecCCcccccccCcc
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTE 108 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 108 (276)
|+|+|+|||+||||+|+|||.+++++|+||++||+|+| ++++..++.+.... .+
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~-------~~------------------ 56 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVV-------YT------------------ 56 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCC-------cc------------------
Confidence 67999999999999999999999999999999999996 67766665432100 00
Q ss_pred CcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhh
Q 023886 109 GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188 (276)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~ 188 (276)
+.+.+ . . |||||||||+.+.....++
T Consensus 57 ---------------------~~~~~----~-~-d~viiD~p~~~~~~~~~~l--------------------------- 82 (179)
T cd02036 57 ---------------------LHDVL----A-G-DYILIDSPAGIERGFITAI--------------------------- 82 (179)
T ss_pred ---------------------hhhcc----c-C-CEEEEECCCCCcHHHHHHH---------------------------
Confidence 00000 0 1 9999999998553321111
Q ss_pred hcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCCC
Q 023886 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDD 267 (276)
Q Consensus 189 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~~ 267 (276)
...+.+++|+.|+..++..+.++.+.+++.+.+..++|+|++.+..
T Consensus 83 ---------------------------------~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 83 ---------------------------------APADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred ---------------------------------HhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 0135589999999999999999999999988888999999986654
No 44
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.87 E-value=1.1e-21 Score=162.25 Aligned_cols=158 Identities=24% Similarity=0.225 Sum_probs=107.8
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc-cCCCcceeccCCCceeeecCCcccccccCcc
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR-FTKTPTLVNGFSNLYAMEVDPSVEEETGSTE 108 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 108 (276)
|+|+|+|||+||||+|++||.+|+++|+||++||+|++.+....+... ....... ...... . .
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~----~~~~~~---~-~-------- 64 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGL----ENANAI---L-K-------- 64 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSS----HGHHCH---H-E--------
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccc----eehhhh---h-h--------
Confidence 689999999999999999999999999999999999999888777632 0000000 000000 0 0
Q ss_pred CcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhh
Q 023886 109 GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188 (276)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~ 188 (276)
.+....... . ..+ .....++++++.+.+..||||||||||+.+......+
T Consensus 65 ~~~~~~~~~-~-~~~-~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~~l--------------------------- 114 (195)
T PF01656_consen 65 NFESQDIYQ-G-EEY-LDPELLREILESLIKSDYDYIIIDTPPGLSDPVRNAL--------------------------- 114 (195)
T ss_dssp SCCHHHHHH-H-CHC-HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHHHH---------------------------
T ss_pred ccchhhhhh-h-hhh-hHHHHHHHHHHHhhhccccceeecccccccHHHHHHH---------------------------
Confidence 000000000 0 001 2345688888887653599999999998654421111
Q ss_pred hcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCC--CCcCeEEEccccCC
Q 023886 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE--IDTHNIIINQVLYD 266 (276)
Q Consensus 189 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~--~~~~g~vvN~~~~~ 266 (276)
. ..+.+++++.|+..++..+.++.+.++..+ ++..++|+|++.+.
T Consensus 115 -------------------------------~--~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 115 -------------------------------A--AADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp -------------------------------H--TSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred -------------------------------H--hCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence 1 236689999999999999999999999888 55789999999554
No 45
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.86 E-value=1.1e-21 Score=171.47 Aligned_cols=45 Identities=31% Similarity=0.522 Sum_probs=40.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhc
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~ 75 (276)
|+| +|||||||||+|.|||.+||++|+|||+||+|||++++..++
T Consensus 3 ia~-~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~ 47 (275)
T TIGR01287 3 IAI-YGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLL 47 (275)
T ss_pred eEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCcccccc
Confidence 445 589999999999999999999999999999999999887764
No 46
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.86 E-value=1.2e-21 Score=172.76 Aligned_cols=47 Identities=32% Similarity=0.497 Sum_probs=42.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~ 75 (276)
++|+|. +||||||||+|+|||.+|++.|+|||+||+|||++.+..++
T Consensus 5 ~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~ 51 (295)
T PRK13234 5 RQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLIL 51 (295)
T ss_pred eEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccc
Confidence 455575 99999999999999999999999999999999999887664
No 47
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.86 E-value=2.2e-21 Score=171.16 Aligned_cols=49 Identities=29% Similarity=0.467 Sum_probs=43.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhc
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~ 75 (276)
+++++.++|||||||||+|+|||+.||++|+|||+||+|||++.+..+.
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~ 53 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLML 53 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhc
Confidence 3456655999999999999999999999999999999999998777664
No 48
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.86 E-value=1.5e-21 Score=174.45 Aligned_cols=172 Identities=13% Similarity=0.121 Sum_probs=106.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC-hhHHhccccCCCcceeccCCCceeeecCCccccc-
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN-LSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEE- 103 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~-l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 103 (276)
..+.|+|+|+||||||||+|+|||.++++.|+||+|||+|+|++ +..+||.+........+.... ....+.....+
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~--~~~~~~~~l~~~ 169 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQA--RGRLPAGALRDA 169 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhc--CCCcCHHHHHHh
Confidence 44677799999999999999999999999999999999999876 556777653211110000000 00000000000
Q ss_pred ccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhH
Q 023886 104 TGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI 183 (276)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~ 183 (276)
++...++..++..... ... .....++++++.+++ +||||||||||..+......+
T Consensus 170 ~~~~~~l~vl~~~~~~-~~~-~~~~~l~~~l~~l~~-~~D~VIID~p~~~~~~~~~~L---------------------- 224 (322)
T TIGR03815 170 LPRRGGLSVLSWGRAV-GAA-LPPAAVRAVLDAARR-GGDLVVVDLPRRLTPAAETAL---------------------- 224 (322)
T ss_pred CCCcCCeEEEecCCCC-cCC-CCHHHHHHHHHHHHh-cCCEEEEeCCCCCCHHHHHHH----------------------
Confidence 1111122222111100 001 123467889999986 899999999998654422221
Q ss_pred hhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccc
Q 023886 184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (276)
Q Consensus 184 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~ 263 (276)
...+.+++|+.|+..++..+.++++.+...+.++ ++|+|+.
T Consensus 225 --------------------------------------~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~-~lVv~~~ 265 (322)
T TIGR03815 225 --------------------------------------ESADLVLVVVPADVRAVAAAARVCPELGRRNPDL-RLVVRGP 265 (322)
T ss_pred --------------------------------------HHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCe-EEEEeCC
Confidence 0135688888888888888888888888765433 6777764
No 49
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.86 E-value=1.8e-21 Score=169.21 Aligned_cols=46 Identities=30% Similarity=0.481 Sum_probs=41.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~ 75 (276)
++|+|+ +||||||||+|+|||.+||+.| |||+||+|||++++..++
T Consensus 3 ~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~ 48 (264)
T PRK13231 3 KKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLC 48 (264)
T ss_pred eEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhh
Confidence 456677 7999999999999999999999 999999999999887654
No 50
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.85 E-value=8e-21 Score=167.29 Aligned_cols=45 Identities=33% Similarity=0.529 Sum_probs=41.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHh
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF 74 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l 74 (276)
+|+|+ |||||||||+|+|||.+||++|+|||+||+|||.+.+..+
T Consensus 2 vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l 46 (296)
T TIGR02016 2 IIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLL 46 (296)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchh
Confidence 45677 9999999999999999999999999999999999877766
No 51
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.81 E-value=1.9e-19 Score=152.23 Aligned_cols=53 Identities=38% Similarity=0.423 Sum_probs=49.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTK 80 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~ 80 (276)
++|+++|.||||||||+|+|||.+|++.|++|++||+|||..+...||.+...
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~~ 54 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLDD 54 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCcc
Confidence 56779999999999999999999999999999999999999999999987653
No 52
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.81 E-value=3.6e-19 Score=133.38 Aligned_cols=101 Identities=24% Similarity=0.379 Sum_probs=85.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCcc
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTE 108 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 108 (276)
|+++|+|||+||||++.|||.++++. |++|+++|+|+|.+.
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~-------------------------------------- 43 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------------------------------------- 43 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC--------------------------------------
Confidence 57899999999999999999999998 999999999999752
Q ss_pred CcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhh
Q 023886 109 GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188 (276)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~ 188 (276)
|||||||||+.+..+...+
T Consensus 44 ----------------------------------D~IIiDtpp~~~~~~~~~l--------------------------- 62 (106)
T cd03111 44 ----------------------------------DYVVVDLGRSLDEVSLAAL--------------------------- 62 (106)
T ss_pred ----------------------------------CEEEEeCCCCcCHHHHHHH---------------------------
Confidence 8999999998664432221
Q ss_pred hcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCC---cCeEEEcc
Q 023886 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEID---THNIIINQ 262 (276)
Q Consensus 189 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~---~~g~vvN~ 262 (276)
...+.+++|+.|+..++..+.++.+.+++.+.+ ...+|+||
T Consensus 63 ---------------------------------~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 63 ---------------------------------DQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred ---------------------------------HHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 012568999999999999999999999988765 56789996
No 53
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.79 E-value=7.9e-19 Score=155.67 Aligned_cols=51 Identities=31% Similarity=0.464 Sum_probs=43.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC-ChhHHhccc
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQR 77 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~-~l~~~l~~~ 77 (276)
..+++.+.||||+||||+++|||.+||++|+||++||+|+++ ++..+||..
T Consensus 30 ~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~ 81 (329)
T cd02033 30 KTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGK 81 (329)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhcccc
Confidence 345554458999999999999999999999999999999976 566777754
No 54
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.78 E-value=3.7e-18 Score=141.12 Aligned_cols=172 Identities=23% Similarity=0.298 Sum_probs=112.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCC-CcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecC------Cccccc
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVR-PSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVD------PSVEEE 103 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G-~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ 103 (276)
+.++||||+||||+|+.|+..+.++| ++||+||+||..|++..||.+.+..+ ..+...+...... +....
T Consensus 3 IaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~~~~--lg~~~e~~~k~~~a~~~~~~~~~f- 79 (255)
T COG3640 3 IAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEPMKY--LGGKRELLKKRTGAEPGGPPGEMF- 79 (255)
T ss_pred EEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCCCCCcc--cccHHHHHHHHhccCCCCCccccc-
Confidence 45679999999999999888888775 99999999999999999998864211 0000111000000 00000
Q ss_pred ccCccCcchHHHHHhcc-----------C--CCc----hHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHH
Q 023886 104 TGSTEGMDSLFSELANA-----------I--PGI----DEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLE 166 (276)
Q Consensus 104 ~~~~~~~~~~~~~~~~~-----------~--~~~----~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~ 166 (276)
..+...+.++.++... . .|. .-...++++++.+...+||+||+||-+++..+
T Consensus 80 -k~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHf---------- 148 (255)
T COG3640 80 -KENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHF---------- 148 (255)
T ss_pred -ccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhh----------
Confidence 0000011111110000 0 000 01236789999988656999999999984322
Q ss_pred HHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHH
Q 023886 167 KGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246 (276)
Q Consensus 167 ~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~ 246 (276)
.+ |+ -...+.++.|+-|..-+++.|+++.+
T Consensus 149 --------------------gR--g~----------------------------~~~vD~vivVvDpS~~sl~taeri~~ 178 (255)
T COG3640 149 --------------------GR--GT----------------------------IEGVDLVIVVVDPSYKSLRTAERIKE 178 (255)
T ss_pred --------------------cc--cc----------------------------ccCCCEEEEEeCCcHHHHHHHHHHHH
Confidence 11 10 12357899999999999999999999
Q ss_pred HHhhCCCCcCeEEEccccCC
Q 023886 247 ELTKFEIDTHNIIINQVLYD 266 (276)
Q Consensus 247 ~l~~~~~~~~g~vvN~~~~~ 266 (276)
-..+.|+.-.++|+|++...
T Consensus 179 L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 179 LAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred HHHHhCCceEEEEEeeccch
Confidence 99999988889999999765
No 55
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.75 E-value=8e-18 Score=132.30 Aligned_cols=110 Identities=28% Similarity=0.374 Sum_probs=86.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCccC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEG 109 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 109 (276)
|.|+++|||+||||++.++|..++++|++|+++|+|+|.+..
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~-------------------------------------- 43 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL-------------------------------------- 43 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC--------------------------------------
Confidence 579999999999999999999999999999999999865410
Q ss_pred cchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhh
Q 023886 110 MDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRL 189 (276)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~ 189 (276)
.||||||||||+.+......+
T Consensus 44 -------------------------------~yd~VIiD~p~~~~~~~~~~l---------------------------- 64 (139)
T cd02038 44 -------------------------------DYDYIIIDTGAGISDNVLDFF---------------------------- 64 (139)
T ss_pred -------------------------------CCCEEEEECCCCCCHHHHHHH----------------------------
Confidence 099999999997543321111
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhC-CCCcCeEEEccccCCCC
Q 023886 190 FGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF-EIDTHNIIINQVLYDDE 268 (276)
Q Consensus 190 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~-~~~~~g~vvN~~~~~~~ 268 (276)
...+.+++|+.|+..+++.+.+.++.+.+. +....++|+|++.++.+
T Consensus 65 --------------------------------~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~~~ 112 (139)
T cd02038 65 --------------------------------LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKE 112 (139)
T ss_pred --------------------------------HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCHHH
Confidence 012568999999999999999998888653 44566899999965543
No 56
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.75 E-value=9.8e-19 Score=146.50 Aligned_cols=115 Identities=23% Similarity=0.192 Sum_probs=67.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcceeccCCCceeeecCCcccccccCc
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST 107 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 107 (276)
.|+|.|+||||||||+|+|+|.+|+++|+||.++|+|. |+++..+++.+.... ... ++ .+.. +..
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~--~~~---gi---~Lp~------p~~ 67 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWA--QRD---GI---ELPV------PSH 67 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHH--HHH---T---------------EE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhH--Hhc---Cc---ccCC------ccc
Confidence 46799999999999999999999999999999999997 788899987543210 000 00 0000 000
Q ss_pred cCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhh
Q 023886 108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ 160 (276)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ 160 (276)
..+.. .... ....+......|.+++..+.. ++||||||||++.+.+.-++
T Consensus 68 ~~L~~-~~~~-v~~~~~~~~~~L~q~l~~l~~-~~DfLVID~PGtd~~lsr~A 117 (261)
T PF09140_consen 68 FFLPP-DQAS-VWEGENVEDKRLEQALADLEG-DLDFLVIDTPGTDDRLSRVA 117 (261)
T ss_dssp E-SSS-HHHH-TTS-HHHHHHHHHHHHHHHHH-H-SEEEEEE-SSS-HHHHHH
T ss_pred eeecc-cccc-cccCcchhHHHHHHHHHHHhc-CCCEEEEeCCCCCcHHHHHH
Confidence 01111 1111 111122234578888988886 89999999998877665544
No 57
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.74 E-value=1.9e-17 Score=123.51 Aligned_cols=38 Identities=42% Similarity=0.535 Sum_probs=36.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
|.|.|.|||+||||+|.+||..++++|++|+++|+|++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 57999999999999999999999999999999999999
No 58
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.74 E-value=1.3e-16 Score=133.14 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=72.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST 107 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 107 (276)
+.|.|+|.|||+||||.+..||..|+++|.+|.|||+||+.++..|-....... ... ..+.+..
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~--~~~--~~~~V~~------------ 65 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPG--AWP--DRIEVYE------------ 65 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccC--CCC--CCeeEEe------------
Confidence 457799999999999999999999999999999999999999998854321110 000 1111100
Q ss_pred cCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh
Q 023886 108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF 161 (276)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i 161 (276)
..+...+.+.++......|||||||+.++.+.+...++
T Consensus 66 ----------------~~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~ai 103 (231)
T PF07015_consen 66 ----------------ADELTILEDAYEAAEASGFDFVLVDLEGGASELNDYAI 103 (231)
T ss_pred ----------------ccchhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHHH
Confidence 01223456666665543699999999998887765553
No 59
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.69 E-value=8.4e-17 Score=135.78 Aligned_cols=51 Identities=29% Similarity=0.427 Sum_probs=44.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhcccc
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRF 78 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~ 78 (276)
+++|+++|||||+||||+|+|||..|+.. +|++|+|+|- .+|+..+|+.+.
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e~ 52 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVEV 52 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhccc-cceEEEecCCCCCCcceEeccch
Confidence 47899999999999999999999998876 8999999996 677877777653
No 60
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.59 E-value=9.2e-15 Score=123.84 Aligned_cols=171 Identities=24% Similarity=0.340 Sum_probs=94.0
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHH-hccccCCCcceeccCCCcee-eecCCcccccccCcc
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA-FQQRFTKTPTLVNGFSNLYA-MEVDPSVEEETGSTE 108 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~-l~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~ 108 (276)
+.+.||||.||||+|+||+.+||+.|+||++|-+||.+..+.. ++... .+++.+.+..-.. .+...+..+ ..+..
T Consensus 3 IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~--~~Tvld~~~~~~~~e~~~ledvv-~~G~~ 79 (273)
T PF00142_consen 3 IAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKA--IPTVLDLLREKGSVEDLELEDVV-KEGFK 79 (273)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS---SBHHHHHHHHCTGGGS-HHHHS-EEEGG
T ss_pred EEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCcc--chhHHHHHhhccccccCCCCcEE-EeccC
Confidence 4556899999999999999999999999999999999888744 44432 2222221100000 000000000 00000
Q ss_pred CcchHHHHHhccCCCchHH----HHHHHHHHHhc--cCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 023886 109 GMDSLFSELANAIPGIDEA----MSFAEMLKLVQ--TMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGM 182 (276)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~----~~l~~~l~~l~--~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~ 182 (276)
+..-+ +..+..||.--. ..-.++++.+. ..+||||++|.-...- =--++.|..
T Consensus 80 gi~Cv--EsGGPePGvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVV-CGGFamPir------------------ 138 (273)
T PF00142_consen 80 GILCV--ESGGPEPGVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDVV-CGGFAMPIR------------------ 138 (273)
T ss_dssp GEEEE--E---SCTTSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSS-CTTTTHHHH------------------
T ss_pred Cceee--ccCCCcccccccccchhhhhhhHHhhhhhhcCCceEEEEEEeeeE-Eeeeehhhh------------------
Confidence 00000 001112221111 12233444332 1369999999776300 000112211
Q ss_pred HhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhC----CCCcCeE
Q 023886 183 INQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF----EIDTHNI 258 (276)
Q Consensus 183 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~----~~~~~g~ 258 (276)
+...+.+++||.-|.+++..|.++.+.++.+ +.++.|+
T Consensus 139 --------------------------------------~g~a~evyIVtSge~mslyAANNI~~~i~~~~~~g~~~l~Gi 180 (273)
T PF00142_consen 139 --------------------------------------EGYAQEVYIVTSGEFMSLYAANNICKAIKNFADRGGARLGGI 180 (273)
T ss_dssp --------------------------------------TTS-SEEEEEEBSSHHHHHHHHHHHHHHHHHCTTSS-EEEEE
T ss_pred --------------------------------------hccCCEEEEEecCcHHHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 2234679999999999999999999999865 4689999
Q ss_pred EEccc
Q 023886 259 IINQV 263 (276)
Q Consensus 259 vvN~~ 263 (276)
|.|+-
T Consensus 181 I~N~r 185 (273)
T PF00142_consen 181 ICNSR 185 (273)
T ss_dssp EEE-S
T ss_pred EecCC
Confidence 99954
No 61
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.58 E-value=2.5e-14 Score=118.04 Aligned_cols=157 Identities=23% Similarity=0.382 Sum_probs=99.4
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc-cc-C----------------CCcceeccCCCce
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ-RF-T----------------KTPTLVNGFSNLY 92 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~-~~-~----------------~~~~~~~~~~~l~ 92 (276)
+-+-||||.||||++.|+|.+||+.|+||++|-+||.+..+..+-. .. + .+..++.++.++.
T Consensus 4 iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~Gv~ 83 (278)
T COG1348 4 IAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFGGVK 83 (278)
T ss_pred EEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccCCceE
Confidence 4556999999999999999999999999999999999887766532 21 1 0112222333333
Q ss_pred eeecC-CcccccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhcc--CCCcEEEEcCCCchhHHHhhhhHHHHHHHH
Q 023886 93 AMEVD-PSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQT--MDYSCIVFDTAPTGHTLRLLQFPSTLEKGL 169 (276)
Q Consensus 93 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~--~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l 169 (276)
+.+.. |.+. .+.. ..+.... -++|+.+.. ...||||+|....
T Consensus 84 CVEsGGPepG------vGCA---------GRGVita---i~~Le~lgaf~~~~DvviyDVLGD----------------- 128 (278)
T COG1348 84 CVESGGPEPG------VGCA---------GRGVITA---INLLEELGAFEEDLDVVIYDVLGD----------------- 128 (278)
T ss_pred EeecCCCCCC------CCcc---------cchHHHH---HHHHHHhCCccccCCEEEEeccCc-----------------
Confidence 33211 1111 1111 1222232 234444431 1459999999874
Q ss_pred HHHHHHHHHHhhhHhhhhhhcC-CCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHH
Q 023886 170 DKMMSLKNKFGGMINQMTRLFG-IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248 (276)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l 248 (276)
-+.| +..++ .....+.+++||.-+.+++..|.++.+.+
T Consensus 129 ------------------VVCGGFAmPi-----------------------Reg~AdeiyIVtSge~MalYAANNI~kgi 167 (278)
T COG1348 129 ------------------VVCGGFAMPI-----------------------REGYADEIYIVTSGEMMALYAANNIAKGI 167 (278)
T ss_pred ------------------eeecceeeeh-----------------------hcccCcEEEEEecCchHHHHHHHHHHHHH
Confidence 0111 10111 12345779999999999999999998888
Q ss_pred hhC----CCCcCeEEEccc
Q 023886 249 TKF----EIDTHNIIINQV 263 (276)
Q Consensus 249 ~~~----~~~~~g~vvN~~ 263 (276)
+++ ++++.|+|-|+-
T Consensus 168 ~k~a~~~~~rLgGiIcNsr 186 (278)
T COG1348 168 RKYAKTGGVRLGGIICNSR 186 (278)
T ss_pred HHHhhcCCcceeeEEecCC
Confidence 764 588999999965
No 62
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.56 E-value=1.4e-14 Score=115.75 Aligned_cols=50 Identities=34% Similarity=0.264 Sum_probs=39.6
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC-hhHHhcccc
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN-LSDAFQQRF 78 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~-l~~~l~~~~ 78 (276)
.|.|+|.+||+||||+|.|||..+|+.|++|++||+|...+ +..+++.+.
T Consensus 2 ~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~ 52 (157)
T PF13614_consen 2 VIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEP 52 (157)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccccccccc
Confidence 46799999999999999999999999999999999998544 666666544
No 63
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.53 E-value=5.2e-13 Score=116.23 Aligned_cols=42 Identities=31% Similarity=0.326 Sum_probs=36.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
++++.+.|++|+||||++++||..+++.|+||++||+|++..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 455544499999999999999999999999999999998644
No 64
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.47 E-value=6e-12 Score=102.38 Aligned_cols=40 Identities=30% Similarity=0.465 Sum_probs=36.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
++++.|++|+||||++.++|..+++.|++|++||+|++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 4567799999999999999999999999999999998754
No 65
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.47 E-value=1.5e-12 Score=103.23 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=35.6
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
+.+.||||+||||++.+++..+.+.|.||+++|+|++..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~ 40 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSP 40 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Confidence 456799999999999999999999999999999998754
No 66
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.46 E-value=4.3e-13 Score=101.88 Aligned_cols=100 Identities=27% Similarity=0.347 Sum_probs=63.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCccCc
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGM 110 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 110 (276)
++++||||+||||++.++|..++++|++|++||+|| .++...++...... .......+.... ..+.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~-~~~~~~~~~~~~~~---------~~~i~~g~~~~~----~~g~ 67 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP-DDLPERLSVEVGEI---------KLLLVMGMGRPG----GEGC 67 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc-hhhHHHHhhccCCc---------eEEEEecccccC----CCCC
Confidence 567899999999999999999999999999999999 44444444332210 000111111000 0000
Q ss_pred chHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHH
Q 023886 111 DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTL 156 (276)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l 156 (276)
. . .....+++++..+....|||+|+||++++..+
T Consensus 68 ~-----------~-~~n~~~~~~l~~~~~~~~~~vivDt~ag~e~~ 101 (116)
T cd02034 68 Y-----------C-PENALLNALLRHLVLTRDEQVVVDTEAGLEHL 101 (116)
T ss_pred E-----------e-hhhHHHHHHHHHeEccCCCEEEEecHHHHHHH
Confidence 0 0 01125688888863348999999999986654
No 67
>PRK10867 signal recognition particle protein; Provisional
Probab=99.43 E-value=4.3e-12 Score=116.63 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=39.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCCCCh
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHNL 70 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~~~l 70 (276)
++.++++.|.+|+||||++++||.++++. |+||++||+|++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 36778888999999999999999999998 999999999997664
No 68
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.43 E-value=1.9e-12 Score=104.65 Aligned_cols=156 Identities=16% Similarity=0.164 Sum_probs=90.5
Q ss_pred EEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC---------hhHHhccccCCCcceeccCCCceeeecCCcccc
Q 023886 32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN---------LSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE 102 (276)
Q Consensus 32 v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~---------l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (276)
+++..+|+||||+|++||.+|+++|+||.++.-..... +...++..... ... .+ .
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~~~d~d~~~i~~~~~~~~~~--------~~~-----~~---~ 65 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIEKTNSDALLLQNISGTALDW--------DEV-----NP---Y 65 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCCCCchHHHHHHHHcCCCCch--------hcc-----CC---e
Confidence 45668999999999999999999999999974222110 11111111000 000 00 0
Q ss_pred cccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 023886 103 ETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGM 182 (276)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~ 182 (276)
.+ ...............+ .....+.+.++.+++ +|||||||+|+++..-.....
T Consensus 66 ~~--~~~~~p~~~~~~~~~~--~~~~~i~~~~~~l~~-~~D~viid~~g~~~~~~~~~~--------------------- 119 (166)
T TIGR00347 66 AF--ALPLSPHIAADQEGRP--IDLEELSKHLRTLEQ-KYDFVLVEGAGGLCVPITEEY--------------------- 119 (166)
T ss_pred ee--CCCCChHHHHHHhCCC--CCHHHHHHHHHHHHh-cCCEEEEEcCCccccCCCCCC---------------------
Confidence 00 0000000011111101 112245666777776 899999999986321100000
Q ss_pred HhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEc
Q 023886 183 INQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN 261 (276)
Q Consensus 183 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN 261 (276)
....+.+.+.++ +++|+.+....+.++....+.+++.++++.|+|+|
T Consensus 120 ----------------------------~~~dl~~~~~~~----vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 120 ----------------------------TTADLIKLLQLP----VILVVRVKLGTINHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred ----------------------------cHHHHHHHhCCC----EEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 000122223333 79999999999999999999999999999999998
No 69
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.42 E-value=1.1e-11 Score=105.12 Aligned_cols=42 Identities=31% Similarity=0.434 Sum_probs=38.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
+.+++.++||||||||+|++||.++++.|++|++||+||+.+
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~ 44 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNA 44 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence 345688899999999999999999999999999999999875
No 70
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.40 E-value=7.9e-12 Score=114.81 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=39.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCCCCh
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPAHNL 70 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~~~l 70 (276)
++.+++++|.+|+||||++++||.+++ +.|++|++||+|++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 367889999999999999999999987 58999999999987653
No 71
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.39 E-value=9.5e-12 Score=113.76 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=38.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
+.++.+.|.+|+||||++++||..+++.|+||++|++|++..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 577888899999999999999999999999999999999764
No 72
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.39 E-value=3.1e-12 Score=113.33 Aligned_cols=178 Identities=20% Similarity=0.193 Sum_probs=111.3
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCC-ChhHHhccccCCCcceec-cCCCceeeecCCccc
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAH-NLSDAFQQRFTKTPTLVN-GFSNLYAMEVDPSVE 101 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~-~l~~~l~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 101 (276)
++.+.+.|++.|||+|-||+|.|+|+.++. .++.|+|+|+|.|. +...+|+..+...-+..- ....+.....+.. .
T Consensus 102 ~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~-~ 180 (366)
T COG4963 102 QQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSL-L 180 (366)
T ss_pred hhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHH-H
Confidence 344677899999999999999999999996 59999999999764 455666655432111000 0000000000000 0
Q ss_pred ccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 023886 102 EETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181 (276)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~ 181 (276)
.+++.+..+...+.++..... .....+..+++.++. .||+||+|.|..+..++.-.
T Consensus 181 ~~~~~~l~ll~a~~~~~~~~d--~~~~~~~~Ll~~~~~-~~~~vV~Dlp~~~~~~t~~v--------------------- 236 (366)
T COG4963 181 TRLASGLKLLAAPTELAKNYD--LKTGAVERLLDLLRG-SFDFVVVDLPNIWTDWTRQV--------------------- 236 (366)
T ss_pred hccCCCceeecCCcchhhhcc--cccchHHHHHHHhhc-cCCeEEEcCCCccchHHHHH---------------------
Confidence 022222223222222222111 122356788888886 99999999995433221100
Q ss_pred hHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCC--CcCeEE
Q 023886 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEI--DTHNII 259 (276)
Q Consensus 182 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~--~~~g~v 259 (276)
+. ..+.+++|..|+..+++.++++++.+++.+. +...+|
T Consensus 237 -------------------------------------L~--~Sd~iviv~e~sl~slR~ak~lld~l~~~r~~~~~p~lv 277 (366)
T COG4963 237 -------------------------------------LS--GSDEIVIVAEPSLASLRNAKELLDELKRLRPNDPKPILV 277 (366)
T ss_pred -------------------------------------Hh--cCCeEEEEecccHHHHHHHHHHHHHHHHhCCCCCCceEE
Confidence 01 2367999999999999999999999998755 455899
Q ss_pred EccccCC
Q 023886 260 INQVLYD 266 (276)
Q Consensus 260 vN~~~~~ 266 (276)
+|++-.+
T Consensus 278 ~n~~~~~ 284 (366)
T COG4963 278 LNRVGVP 284 (366)
T ss_pred eeecCCC
Confidence 9998554
No 73
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.38 E-value=3.6e-11 Score=106.81 Aligned_cols=42 Identities=29% Similarity=0.261 Sum_probs=37.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
..++.+.|.+|+||||++++||..++..|++|+++|+|++..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~ 155 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA 155 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch
Confidence 466666689999999999999999999999999999999654
No 74
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.33 E-value=4.3e-11 Score=110.23 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=38.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
.+.++++.|.+|+||||++++||..+.+.|++|++||+|+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 3567777799999999999999999999999999999998654
No 75
>PRK13768 GTPase; Provisional
Probab=99.32 E-value=3.1e-11 Score=104.18 Aligned_cols=42 Identities=40% Similarity=0.466 Sum_probs=38.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
+.++++.|+||+||||++.+++.+++..|++|++||+||+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~ 43 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVE 43 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccc
Confidence 467888899999999999999999999999999999999754
No 76
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.30 E-value=3.1e-11 Score=87.80 Aligned_cols=33 Identities=48% Similarity=0.669 Sum_probs=31.1
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
++++|++|+||||++.++|..+++.|++|+++|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 567788899999999999999999999999999
No 77
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.27 E-value=1.2e-10 Score=104.74 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=37.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
.+++.+.|.+|+||||+++.||..+..+|++|++|++|++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 35666778899999999999999999999999999999986
No 78
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.23 E-value=3.8e-10 Score=101.15 Aligned_cols=42 Identities=31% Similarity=0.312 Sum_probs=37.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
.+++.+.|..|+||||++++||..+..+|++|.+|++|++..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 566766677899999999999999989999999999999865
No 79
>PRK14974 cell division protein FtsY; Provisional
Probab=99.14 E-value=9.8e-10 Score=98.08 Aligned_cols=42 Identities=29% Similarity=0.259 Sum_probs=38.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
+.++++.|.+|+||||++++||..+...|++|+++++|+...
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 578888899999999999999999999999999999997643
No 80
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.13 E-value=2e-09 Score=91.09 Aligned_cols=41 Identities=7% Similarity=0.015 Sum_probs=35.9
Q ss_pred EEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD 266 (276)
Q Consensus 226 ~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~ 266 (276)
.+++|+.++..++..+...++.++..++++.|+|+|++.+.
T Consensus 135 pvilV~~~~~~~i~~~~~~i~~l~~~~~~i~gvIlN~~~~~ 175 (222)
T PRK00090 135 PVILVVGVKLGCINHTLLTLEAIRARGLPLAGWVANGIPPE 175 (222)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEEccCCCc
Confidence 37888888888899899999999999999999999998655
No 81
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.11 E-value=1.8e-09 Score=98.26 Aligned_cols=44 Identities=32% Similarity=0.293 Sum_probs=38.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHH-HhCCCcEEEEecCCCCChh
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILL-AEVRPSVLIISTDPAHNLS 71 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~l-a~~G~kVlliD~D~~~~l~ 71 (276)
.+++++.|.+|+||||++++||..+ ...|++|+++|+|++...+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA 267 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA 267 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH
Confidence 4677788999999999999999876 5779999999999987644
No 82
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.10 E-value=1.4e-09 Score=100.43 Aligned_cols=41 Identities=32% Similarity=0.264 Sum_probs=35.5
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHH--hCCCcEEEEecCCCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPAHN 69 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la--~~G~kVlliD~D~~~~ 69 (276)
+++++.|.+||||||++++||..++ +.|++|++||+|++..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI 264 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence 4666668899999999999999998 4589999999999864
No 83
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.07 E-value=2.2e-09 Score=89.13 Aligned_cols=42 Identities=33% Similarity=0.286 Sum_probs=35.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
++++++-|..||||||+++-||+.+..+|+||.+|.+|....
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 356777899999999999999999998899999999998653
No 84
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=99.04 E-value=2.5e-10 Score=79.84 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=33.6
Q ss_pred CeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc
Q 023886 224 LTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL 264 (276)
Q Consensus 224 ~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~ 264 (276)
.+++++||+|...+..++++....+++.++++.|+|.||.+
T Consensus 25 ~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~ 65 (81)
T PF10609_consen 25 IDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSY 65 (81)
T ss_dssp -SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-E
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 36799999999999999999999999999999999999983
No 85
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.04 E-value=5.4e-09 Score=94.27 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=65.0
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh-HHhccccCCCcceeccCCCceeeecCCccccc
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS-DAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEE 103 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~-~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 103 (276)
.+++.++...|--|.||||+|.-||.+|.++|+||+||-+|.+.... +-|..-... -++.+...+
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q--------~~v~~f~~~------ 162 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ--------VGVPFFGSG------ 162 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHH--------cCCceecCC------
Confidence 34567788889999999999999999999999999999999876532 222111000 001011000
Q ss_pred ccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchh
Q 023886 104 TGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGH 154 (276)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~ 154 (276)
.+......-++.++..+...||+|||||++-.+
T Consensus 163 ------------------~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ 195 (451)
T COG0541 163 ------------------TEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLH 195 (451)
T ss_pred ------------------CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence 011112244777888877689999999999633
No 86
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.03 E-value=6.7e-09 Score=96.85 Aligned_cols=41 Identities=27% Similarity=0.298 Sum_probs=34.6
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecCCCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPAHN 69 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D~~~~ 69 (276)
.++.+.|.+|+||||++.+||..++.. |++|.+|++|++..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi 393 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV 393 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 455555899999999999999998875 58999999998764
No 87
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.02 E-value=1.4e-08 Score=89.86 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=39.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~ 71 (276)
...++.+.|++|+||||++..++..+.+.|++|.+|+.||+.+.+
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~ 77 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFT 77 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 456666669999999999999999999999999999999987653
No 88
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.92 E-value=2.2e-08 Score=91.05 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=36.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHh----CCCcEEEEecCCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLIISTDPAHN 69 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~----~G~kVlliD~D~~~~ 69 (276)
..++++.|+.||||||+++.||..+.. .|++|++|++|++..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 567888899999999999999998873 589999999999754
No 89
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.89 E-value=7.4e-09 Score=90.82 Aligned_cols=42 Identities=29% Similarity=0.230 Sum_probs=36.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhC-C-CcEEEEecCCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEV-R-PSVLIISTDPAHN 69 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~-G-~kVlliD~D~~~~ 69 (276)
.+++.+.|.+|+||||+++.||..++.. | ++|.+|++|++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 4566666899999999999999999976 5 8999999999763
No 90
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.82 E-value=8.7e-08 Score=83.16 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=35.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
..+.+.|++|+||||+...+|..+...|++|.+|++|++.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 4555668899999999999999999889999999999875
No 91
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.80 E-value=9.4e-08 Score=83.81 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=64.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC-ChhHHhccccCCCcceeccCCCceeeecCCcccccc
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET 104 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 104 (276)
+.+-++.+-|-.|+||||+.+-||+.+.++|+||+|.-+|.-. ..-.-|..-... -+.....
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er--------~gv~vI~--------- 199 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGER--------LGVPVIS--------- 199 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHH--------hCCeEEc---------
Confidence 3466777779999999999999999999999999999999632 222222211000 0100000
Q ss_pred cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHH
Q 023886 105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTL 156 (276)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l 156 (276)
..+|.+.+....+.++..+..+||+||+||++-+++-
T Consensus 200 ---------------~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk 236 (340)
T COG0552 200 ---------------GKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNK 236 (340)
T ss_pred ---------------cCCCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCc
Confidence 0023334445566667666568999999999976643
No 92
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.76 E-value=1.8e-07 Score=87.45 Aligned_cols=40 Identities=25% Similarity=0.171 Sum_probs=36.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
++++|++.++|+||||++++|+.+|+++|++|..+..+|.
T Consensus 4 ~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd 43 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPD 43 (451)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCC
Confidence 4577888899999999999999999999999999988654
No 93
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=98.76 E-value=2e-07 Score=72.68 Aligned_cols=41 Identities=10% Similarity=0.015 Sum_probs=35.9
Q ss_pred EEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCCC
Q 023886 227 FVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDD 267 (276)
Q Consensus 227 ~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~~ 267 (276)
+++|+.|+..++..+....+.++..|+.+.|+|.|+..+.+
T Consensus 71 vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~ 111 (134)
T cd03109 71 AILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKE 111 (134)
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCcc
Confidence 78889898889998999999999999999999999887654
No 94
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=1.9e-07 Score=82.96 Aligned_cols=95 Identities=19% Similarity=0.209 Sum_probs=63.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcceeccCCCceeeecCCcccccc
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET 104 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 104 (276)
..+.|+.+-|--|+||||++.-||+++.++|+||+||=+|. .+...+-|..........+- .
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y--g--------------- 161 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFY--G--------------- 161 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeE--e---------------
Confidence 34677777789999999999999999999999999999996 45555555432211111000 0
Q ss_pred cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCc
Q 023886 105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPT 152 (276)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~ 152 (276)
+....+......+-++..++.+||+||+||..-
T Consensus 162 ---------------syte~dpv~ia~egv~~fKke~fdvIIvDTSGR 194 (483)
T KOG0780|consen 162 ---------------SYTEADPVKIASEGVDRFKKENFDVIIVDTSGR 194 (483)
T ss_pred ---------------cccccchHHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 001112223345566666667999999999985
No 95
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.74 E-value=3.7e-07 Score=76.64 Aligned_cols=43 Identities=12% Similarity=0.014 Sum_probs=39.5
Q ss_pred EEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCCCCC
Q 023886 227 FVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEG 269 (276)
Q Consensus 227 ~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~~~~ 269 (276)
+|+|+...--.+..+.-.++.+++.|+++.|+|+|+..+..+.
T Consensus 139 vILV~~~~LGtINHtlLt~eal~~~gl~l~G~I~n~~~~~~~~ 181 (223)
T COG0132 139 VILVVGIKLGTINHTLLTVEALRARGLPLAGWVANGINPELDH 181 (223)
T ss_pred EEEEecCCccHHHHHHHHHHHHHHCCCCEEEEEEccCCCchhH
Confidence 8999999999999999999999999999999999999876643
No 96
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.65 E-value=1.8e-07 Score=76.71 Aligned_cols=112 Identities=20% Similarity=0.242 Sum_probs=65.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCccCc
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGM 110 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 110 (276)
.++-|..|+||||.+.++-.+.-..|+++-+|.+||..-. |..+... + +.++...+ +.....++..+.++
T Consensus 6 ~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~---f~y~~~i-----D-iRdlIsvd-DVmEdl~~GPNGgL 75 (273)
T KOG1534|consen 6 QLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEH---FNYPVTI-----D-IRDLISVD-DVMEDLDLGPNGGL 75 (273)
T ss_pred EEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHh---hCCcccc-----c-HHHhccHH-HHHHHhccCCCccc
Confidence 3888999999999999999999999999999999996432 2211110 0 00000000 00000011111111
Q ss_pred chHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh
Q 023886 111 DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF 161 (276)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i 161 (276)
---... -...+.++.+.+...+-||+|||||+.+..++.+.+
T Consensus 76 v~cmEy---------l~~NldwL~~~~Gd~eddylifDcPGQIELytH~pV 117 (273)
T KOG1534|consen 76 VYCMEY---------LLENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPV 117 (273)
T ss_pred hhHHHH---------HHHHHHHHHhhccCccCCEEEEeCCCeeEEeecChh
Confidence 110000 112455665555443569999999999998887665
No 97
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.62 E-value=1.1e-06 Score=85.83 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=35.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH-hCC-CcEEEEecCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLA-EVR-PSVLIISTDPAH 68 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~G-~kVlliD~D~~~ 68 (276)
.+|+.+-|..|+||||+.+.||..+. ..| ++|.+|+.|.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 46777889999999999999999885 566 699999999864
No 98
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.61 E-value=3.5e-07 Score=81.61 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=39.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l 70 (276)
+...++-+.|.+|+||||++..|+..+...|++|.+|..||+...
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~ 98 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTR 98 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccc
Confidence 345677788999999999999999999999999999999998664
No 99
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.59 E-value=5.9e-07 Score=77.63 Aligned_cols=113 Identities=19% Similarity=0.302 Sum_probs=71.1
Q ss_pred hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh--hHHhccccCCCcceeccCCCceeee
Q 023886 19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL--SDAFQQRFTKTPTLVNGFSNLYAME 95 (276)
Q Consensus 19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l--~~~l~~~~~~~~~~~~~~~~l~~~~ 95 (276)
|..+... .+..++=+.|-||+||||+.-.|...|.+.|+||.+|-.||.... ..+||.+..-..... .++++.-.
T Consensus 41 l~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~--~~~vFiRs 118 (323)
T COG1703 41 LRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAV--DPGVFIRS 118 (323)
T ss_pred HHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhcc--CCCeEEee
Confidence 4444443 334567677999999999999999999999999999999997554 356665543211111 13333222
Q ss_pred cCCcccccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchh
Q 023886 96 VDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGH 154 (276)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~ 154 (276)
..... .+..+ .....+.+..++...||+|||-|-+.+.
T Consensus 119 ~~srG--------~lGGl-------------S~at~~~i~~ldAaG~DvIIVETVGvGQ 156 (323)
T COG1703 119 SPSRG--------TLGGL-------------SRATREAIKLLDAAGYDVIIVETVGVGQ 156 (323)
T ss_pred cCCCc--------cchhh-------------hHHHHHHHHHHHhcCCCEEEEEecCCCc
Confidence 11111 11111 1234566666665689999999998543
No 100
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.58 E-value=3.4e-07 Score=79.76 Aligned_cols=39 Identities=23% Similarity=0.089 Sum_probs=33.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
+++-+.|.+|+||||++.+|+..|+++| +|.+|+.|+.+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~ 40 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTE 40 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCC
Confidence 3454445569999999999999999999 89999999854
No 101
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.51 E-value=2.4e-06 Score=83.73 Aligned_cols=37 Identities=22% Similarity=0.047 Sum_probs=32.5
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+.+++...|+|||+++..|+.+|.++|+||..+=-+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi 40 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPI 40 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCc
Confidence 4567777999999999999999999999999998633
No 102
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.50 E-value=4.7e-06 Score=75.45 Aligned_cols=41 Identities=27% Similarity=0.256 Sum_probs=35.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHh-CC-CcEEEEecCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAE-VR-PSVLIISTDPAH 68 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~-~G-~kVlliD~D~~~ 68 (276)
..++.+.|..|+||||+++.||..+.. .| ++|.+|++|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 457778899999999999999998764 47 699999999863
No 103
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.46 E-value=6.3e-06 Score=70.22 Aligned_cols=41 Identities=7% Similarity=-0.074 Sum_probs=34.7
Q ss_pred EEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD 266 (276)
Q Consensus 226 ~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~ 266 (276)
.+++|+....-.+..+.-..+.++..++++.|+|+|++.+.
T Consensus 137 pvilV~~~~lg~in~~lLt~~~l~~~~~~~~gvV~N~~~~~ 177 (231)
T PRK12374 137 PVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRINPG 177 (231)
T ss_pred CEEEEECCCcChHHHHHHHHHHHHhCCCcEEEEEEeCccCc
Confidence 37788866777788999999999999999999999999654
No 104
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.44 E-value=5.6e-07 Score=75.02 Aligned_cols=106 Identities=17% Similarity=0.247 Sum_probs=63.6
Q ss_pred EEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC-hhHHhccccCCCcceeccCCCceeeecCCcccccccCccCc
Q 023886 32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN-LSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGM 110 (276)
Q Consensus 32 v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~-l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 110 (276)
++-|.+|.||||-+..+...++..|++|.+|.+||... +..-.+.+...-.++-+. .....+.|+.. +
T Consensus 6 vVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edv---m~~~~LGPNg~--------l 74 (290)
T KOG1533|consen 6 VVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDV---MEELGLGPNGA--------L 74 (290)
T ss_pred EEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHH---HHHhCCCCchh--------H
Confidence 56699999999999999999999999999999999643 222221111100000000 00001111111 1
Q ss_pred chHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHH
Q 023886 111 DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLR 157 (276)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~ 157 (276)
.-.... -...+.++++.++..++-|+|||||+....++
T Consensus 75 ~yc~E~---------l~~~idwl~~~l~~~~~~Y~lFDcPGQVELft 112 (290)
T KOG1533|consen 75 KYCMEY---------LEANIDWLLEKLKPLTDHYVLFDCPGQVELFT 112 (290)
T ss_pred HHHHHH---------HHhhhHHHHHHhhhccCcEEEEeCCCcEEEEe
Confidence 111011 11245778888887688999999999877664
No 105
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=98.43 E-value=3.1e-06 Score=70.30 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=36.1
Q ss_pred EEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886 226 TFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD 266 (276)
Q Consensus 226 ~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~ 266 (276)
.+++|+....-.+.++...++.++..|+++.|+|+|++.++
T Consensus 131 ~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~~~~~ 171 (199)
T PF13500_consen 131 PVILVASGRLGTINHTLLTIEALKQRGIRVLGVILNRVPEP 171 (199)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEEEECTCC
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEEECCCCH
Confidence 48899999999999999999999999999999999997544
No 106
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.43 E-value=1e-06 Score=74.99 Aligned_cols=113 Identities=15% Similarity=0.289 Sum_probs=61.0
Q ss_pred hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh--HHhccccCCCcceeccCCCceeee
Q 023886 19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS--DAFQQRFTKTPTLVNGFSNLYAME 95 (276)
Q Consensus 19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~--~~l~~~~~~~~~~~~~~~~l~~~~ 95 (276)
|+.+... .+..++=+.|.||+||||+.-.|+..+.+.|+||.++-.||....+ .+||.+..-.... .-++++.-.
T Consensus 19 l~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~--~d~~vfIRS 96 (266)
T PF03308_consen 19 LKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELS--RDPGVFIRS 96 (266)
T ss_dssp HHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHH--TSTTEEEEE
T ss_pred HHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcC--CCCCEEEee
Confidence 4444432 2345666779999999999999999999999999999999975443 4556543311100 012332221
Q ss_pred cCCcccccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchh
Q 023886 96 VDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGH 154 (276)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~ 154 (276)
.. +...+..+ .....+.+..++...||+|||-|-..+.
T Consensus 97 ~a--------tRG~lGGl-------------s~~t~~~v~ll~aaG~D~IiiETVGvGQ 134 (266)
T PF03308_consen 97 MA--------TRGSLGGL-------------SRATRDAVRLLDAAGFDVIIIETVGVGQ 134 (266)
T ss_dssp E-----------SSHHHH-------------HHHHHHHHHHHHHTT-SEEEEEEESSST
T ss_pred cC--------cCCCCCCc-------------cHhHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence 11 11111111 1233455555554589999999998533
No 107
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.42 E-value=3.7e-07 Score=78.05 Aligned_cols=36 Identities=39% Similarity=0.412 Sum_probs=29.1
Q ss_pred eCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 34 GGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 34 s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
-|..|+||||.+.++...+...|++|.+|.+||...
T Consensus 2 iGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~ 37 (238)
T PF03029_consen 2 IGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVE 37 (238)
T ss_dssp EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S
T ss_pred CCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhc
Confidence 478999999999999999999999999999999765
No 108
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.37 E-value=1.1e-05 Score=75.47 Aligned_cols=41 Identities=27% Similarity=0.259 Sum_probs=35.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH-hCC-CcEEEEecCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLA-EVR-PSVLIISTDPAH 68 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~G-~kVlliD~D~~~ 68 (276)
..|+.+-|..||||||+++.||..+. +.| ++|.+|++|++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 36777889999999999999999886 456 599999999863
No 109
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.37 E-value=5.1e-06 Score=75.05 Aligned_cols=41 Identities=32% Similarity=0.361 Sum_probs=35.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHH--hCCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la--~~G~kVlliD~D~~ 67 (276)
+.+++..-|.-||||||+-+-||+.+. ...+||.+|.+|..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY 244 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY 244 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc
Confidence 367777779999999999999999999 45679999999975
No 110
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=8e-06 Score=74.54 Aligned_cols=106 Identities=22% Similarity=0.226 Sum_probs=69.5
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeeecCCccccc
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEE 103 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 103 (276)
++.+-++.+.|-.||||||-=+-+|+.|-+.+.|||+.-+|+- .+.-.-|+.... ++..+. + ..
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~----------rl~~l~--~-~~-- 439 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVE----------RLSALH--G-TM-- 439 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHH----------HHHHhc--c-ch--
Confidence 4445556666899999999999999999999999999999984 334344433211 111000 0 00
Q ss_pred ccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHH
Q 023886 104 TGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTL 156 (276)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l 156 (276)
. ++-....|.+....-++.+++.++..||+|+|||++.++.-
T Consensus 440 ------v-----~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~ 481 (587)
T KOG0781|consen 440 ------V-----ELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNN 481 (587)
T ss_pred ------h-----HHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCC
Confidence 0 11111233344456688888888779999999999976543
No 111
>PRK00784 cobyric acid synthase; Provisional
Probab=98.20 E-value=3e-05 Score=73.27 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=31.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
+.+.+++...|||||++++.|+.+|+++|++|..+=
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~K 38 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFK 38 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEeccc
Confidence 345677778999999999999999999999988663
No 112
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.18 E-value=9.8e-06 Score=72.94 Aligned_cols=38 Identities=32% Similarity=0.289 Sum_probs=33.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
++++-|--++||||+|.-||..+-++|+||.+||+|+.
T Consensus 75 ~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvG 112 (398)
T COG1341 75 VVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVG 112 (398)
T ss_pred EEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCC
Confidence 34455667899999999999999999999999999973
No 113
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.15 E-value=9.8e-06 Score=66.27 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=34.4
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+++.|.+|+|||+++..++...++.|.+|+++.++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 5788999999999999999999999999999999854
No 114
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.13 E-value=1.7e-05 Score=67.20 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=41.1
Q ss_pred chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.|+.++.+ +...++.++|.+|+|||+++.++|...++.|.+|++||++
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 35566642 3367889999999999999999999999999999999999
No 115
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.11 E-value=1.8e-05 Score=66.67 Aligned_cols=50 Identities=24% Similarity=0.207 Sum_probs=41.9
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
|+.++.+ ....++.+.|.+|+||||++.++|..++..|.+|+++|++...
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLS 59 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 5555542 3467888999999999999999999999999999999998543
No 116
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.08 E-value=7.8e-05 Score=69.70 Aligned_cols=35 Identities=31% Similarity=0.315 Sum_probs=31.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
+++++...|+|||++++.|+.+|+++|+||..+=.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 56777799999999999999999999999998853
No 117
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.07 E-value=0.00012 Score=68.96 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=29.7
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
.|++.-.+||||++++.|+..|.++|++|..+-.
T Consensus 2 ~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 2 MVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 4566688999999999999999999999997644
No 118
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.04 E-value=3.4e-05 Score=64.48 Aligned_cols=40 Identities=28% Similarity=0.260 Sum_probs=36.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
...++.+.|.+|+|||+++..++...++.|.+|+.||++-
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3577888899999999999999999999999999999985
No 119
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.98 E-value=4.9e-05 Score=64.69 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=36.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
..++.+.|..|+||||+|.+++..+++.|.++++++.+..
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~ 63 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT 63 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 4578888999999999999999999999999999998753
No 120
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.97 E-value=0.00013 Score=66.30 Aligned_cols=34 Identities=29% Similarity=0.204 Sum_probs=29.6
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII 62 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli 62 (276)
+|++.....|+||||+|..|..+|+++|.+|-=+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 4677777999999999999999999999888543
No 121
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.95 E-value=5.7e-05 Score=64.37 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=40.5
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
++.++.+ +...++.+.|.+|+|||+++.++++..+++|.+|++++++-.
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 5555543 346777888999999999999999998889999999999843
No 122
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=97.95 E-value=1.1e-05 Score=75.33 Aligned_cols=69 Identities=14% Similarity=0.063 Sum_probs=52.0
Q ss_pred hhhhccccccchhhhh-c----C-CceEEEEEeCCC---CchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcccc
Q 023886 8 QDQELEIPEGSVRNIL-E----Q-DSLKWVFVGGKG---GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF 78 (276)
Q Consensus 8 ~~~~~~~~~~~l~~~~-~----~-~~~~i~v~s~kG---GvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~ 78 (276)
..|.|..++.++.... + + +.+.|.++|..+ |+||||+|+|||..|++.|+||+++ =.+++++..|+.+.
T Consensus 30 ~~e~Yg~~kaki~~~~~~~~~~~~~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli--LR~Psl~~~fg~kg 107 (557)
T PRK13505 30 DLEPYGKYKAKISLDKIKALKDKKDGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA--LREPSLGPVFGIKG 107 (557)
T ss_pred HHHhccCcceeeCHHHHhhhccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE--EecCCcccccCCCC
Confidence 4567777787775432 1 2 235566899888 9999999999999999999999999 33566677776553
No 123
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.91 E-value=8.6e-05 Score=58.69 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=35.4
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
+++.|++|+||||++..++..++..|.+|++++.+...+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 567899999999999999999999999999999997654
No 124
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.91 E-value=7.3e-06 Score=70.02 Aligned_cols=40 Identities=33% Similarity=0.390 Sum_probs=36.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+.++++-|-.|.||||....|-.++.+.+.+--+|.+||.
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPA 58 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPA 58 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHH
Confidence 4566788999999999999999999999888999999986
No 125
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.89 E-value=3.4e-05 Score=68.54 Aligned_cols=50 Identities=18% Similarity=0.082 Sum_probs=41.5
Q ss_pred chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.|+.++. + +..+++.+.|.+|+||||+|.+++...++.|.+|++||+...
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~ 94 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA 94 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccch
Confidence 4566664 2 345788888999999999999999999999999999998743
No 126
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.85 E-value=0.0002 Score=67.10 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=26.5
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEV 55 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~ 55 (276)
++++++.++....|+||||+|+.|+.+|.++
T Consensus 236 ~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 236 NKPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 4556677777799999999999999999975
No 127
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.82 E-value=4.8e-05 Score=67.67 Aligned_cols=50 Identities=20% Similarity=0.118 Sum_probs=41.6
Q ss_pred chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.|+.++. + +..+|+.+.|.+|+||||+|.+++...++.|.+|++||+.-.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~ 94 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHA 94 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcccc
Confidence 4566665 2 346788888999999999999999999999999999998744
No 128
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.82 E-value=0.00012 Score=63.45 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=36.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
...++++.|.+|+|||++|.++|...+++|.+|++|+++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 3577899999999999999999999999999999999994
No 129
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.76 E-value=0.00015 Score=61.22 Aligned_cols=51 Identities=22% Similarity=0.171 Sum_probs=40.4
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCC------CcEEEEecCCCCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVR------PSVLIISTDPAHN 69 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G------~kVlliD~D~~~~ 69 (276)
|+.++.+ +...++.+.|.+|+|||+++.++|...+..| .+|+.||.+...+
T Consensus 8 lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~ 66 (226)
T cd01393 8 LDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFR 66 (226)
T ss_pred HHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCC
Confidence 4455432 3356788889999999999999999988777 8999999986543
No 130
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=97.73 E-value=4.7e-05 Score=70.51 Aligned_cols=50 Identities=18% Similarity=0.052 Sum_probs=40.1
Q ss_pred eEEEEEeCCC---CchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccC
Q 023886 28 LKWVFVGGKG---GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFT 79 (276)
Q Consensus 28 ~~i~v~s~kG---GvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~ 79 (276)
+.|.++|..+ |+||||+|+|||..|++.|+||+++ =.+++++..||.+..
T Consensus 39 k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~--LR~PSlg~~fg~kgg 91 (524)
T cd00477 39 KLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC--LREPSLGPTFGIKGG 91 (524)
T ss_pred eEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE--EecCCcCcccCCCCC
Confidence 4455888888 9999999999999999999999988 335666666665543
No 131
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.72 E-value=0.00027 Score=56.42 Aligned_cols=36 Identities=28% Similarity=0.174 Sum_probs=32.1
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+.+.|..|+||||++..|...+..+|+||.+|..|.
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~ 37 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDH 37 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456688899999999999999999999999998773
No 132
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.71 E-value=6.9e-05 Score=60.84 Aligned_cols=40 Identities=30% Similarity=0.306 Sum_probs=36.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
..++++.|-+|+||||+|..|+..+...|.+|.++|.|..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 4577888999999999999999999989999999999964
No 133
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.71 E-value=0.00014 Score=61.81 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=39.3
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC------CCcEEEEecCCCCCh
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHNL 70 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~------G~kVlliD~D~~~~l 70 (276)
++.++.+ +...++.+.|.+|+|||+++.+++...+.. +.+|++||++...+.
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~ 67 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRP 67 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCH
Confidence 4444442 335778899999999999999999776543 379999999875443
No 134
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.70 E-value=5.6e-05 Score=60.72 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=43.3
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhcc
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQ 76 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~ 76 (276)
.....++-+.|-.|+||||+|..|...|-++|++|-++|.|. .++|..-||.
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgF 72 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGF 72 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCC
Confidence 334567777899999999999999999999999999999995 5666655554
No 135
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.68 E-value=6.9e-05 Score=59.64 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=34.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.++.+.|..|+||||+|..|...|.+.|++|.++|.|.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~ 40 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDN 40 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcc
Confidence 56788899999999999999999999999999999995
No 136
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.67 E-value=0.00022 Score=67.40 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=42.3
Q ss_pred chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.++.++.+ ....+++++|.+|+||||++..++...+++|.+|+++..+-.
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs 302 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEES 302 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 35555653 346788999999999999999999999999999999999954
No 137
>PRK09354 recA recombinase A; Provisional
Probab=97.66 E-value=0.00014 Score=65.37 Aligned_cols=52 Identities=17% Similarity=0.077 Sum_probs=42.9
Q ss_pred chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
.|+.++. + +..+|+.+.|..|+||||+|..++...++.|.+++.||+.-...
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~ 101 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALD 101 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchH
Confidence 4666665 2 34678888899999999999999999999999999999985433
No 138
>PRK07667 uridine kinase; Provisional
Probab=97.66 E-value=0.0001 Score=61.05 Aligned_cols=39 Identities=21% Similarity=0.092 Sum_probs=36.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+.++.++|.+|+||||+|..|+..+.+.|.+|.+++.|.
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 467788999999999999999999999999999999995
No 139
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.0023 Score=59.11 Aligned_cols=40 Identities=28% Similarity=0.238 Sum_probs=31.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH-hC-CCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLA-EV-RPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~-G~kVlliD~D~~ 67 (276)
..++.+-|..|+||||+..-||..+. .. +.+|.++-.|..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ 232 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSY 232 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 35666779999999999999998654 33 478999988874
No 140
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.62 E-value=0.00021 Score=60.26 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=27.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
..+++.|++|+||||+|.+|+ .++++++.|-.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~ 44 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMS 44 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC-------CCCEEEecccc
Confidence 447888999999999998884 57999999974
No 141
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.61 E-value=0.0018 Score=60.08 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=32.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++.++....|+||||+++.|+.+|.++|.+|--+=..|
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gp 40 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGP 40 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCC
Confidence 46677779999999999999999999999997665433
No 142
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.59 E-value=0.00051 Score=55.70 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=33.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+.++.+.|..|+||||+...+...|...|.||..|=.+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~ 43 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 355677789999999999999999999999999999543
No 143
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.58 E-value=0.00029 Score=59.60 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=38.1
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAH 68 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~~ 68 (276)
++.++.+ +...++.+.|.+|+|||+++..++...+++ |.+|++|.++...
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP 60 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH
Confidence 4445532 335678889999999999999999999988 9999999998543
No 144
>PRK04296 thymidine kinase; Provisional
Probab=97.58 E-value=0.00041 Score=57.23 Aligned_cols=34 Identities=26% Similarity=0.183 Sum_probs=31.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII 62 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli 62 (276)
.+.++.|..|.||||.+..++..++..|++|+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 5678899999999999999999999999999999
No 145
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=97.55 E-value=0.00011 Score=68.75 Aligned_cols=51 Identities=16% Similarity=0.046 Sum_probs=42.3
Q ss_pred ceEEEEEeCCC---CchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccC
Q 023886 27 SLKWVFVGGKG---GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFT 79 (276)
Q Consensus 27 ~~~i~v~s~kG---GvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~ 79 (276)
.+.|.++|--+ |+||||+|++||..|++.|+|| ||+=.+++++..||.+..
T Consensus 54 ~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~LR~Pslg~~fg~kgg 107 (578)
T PRK13506 54 GKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CACIRQPSMGPVFGVKGG 107 (578)
T ss_pred CeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEEeccCCcCCccCCCCC
Confidence 34555888788 9999999999999999999999 777557888888877654
No 146
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.55 E-value=0.00038 Score=52.95 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=34.6
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
..+++.|.+|+||||++..+|..+...++.++.++.+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 34677789999999999999999998877899999886543
No 147
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00053 Score=62.07 Aligned_cols=110 Identities=18% Similarity=0.275 Sum_probs=71.5
Q ss_pred chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeee
Q 023886 18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAME 95 (276)
Q Consensus 18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ 95 (276)
.+.+++.+ -+..++.++|-+|+||||+-..+|..+|+++ |||+|...-...--.+-..+..... +++...
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~------~~l~l~- 152 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPT------NNLYLL- 152 (456)
T ss_pred HHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCc------cceEEe-
Confidence 34445544 3457788999999999999999999999998 9999998865432222222211000 111111
Q ss_pred cCCcccccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHH
Q 023886 96 VDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTL 165 (276)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~ 165 (276)
....+.++++.+.+.++|++|||+=-++..-.+-+.|-+.
T Consensus 153 ------------------------------aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsV 192 (456)
T COG1066 153 ------------------------------AETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSV 192 (456)
T ss_pred ------------------------------hhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcH
Confidence 1124566777776668999999998876666655555443
No 148
>PRK05973 replicative DNA helicase; Provisional
Probab=97.52 E-value=0.00014 Score=61.97 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=37.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+..++++.|.+|+|||+++.++|...++.|++|++++++..
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 35678999999999999999999999999999999999965
No 149
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.50 E-value=0.00056 Score=60.91 Aligned_cols=52 Identities=25% Similarity=0.200 Sum_probs=39.4
Q ss_pred chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCCCC
Q 023886 18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHN 69 (276)
Q Consensus 18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~~~ 69 (276)
.++.++.+ +...|.-+.|.+|+|||+++..+|...+. .|.+|+.||+.-..+
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~ 143 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFR 143 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCC
Confidence 35555553 44688889999999999999999976542 356999999986544
No 150
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.49 E-value=0.00052 Score=58.66 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=32.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHh------------CCCcEEEEecCCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAE------------VRPSVLIISTDPA 67 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~------------~G~kVlliD~D~~ 67 (276)
+.++.|.||+||||++..+|.++|. .+.+|++++++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~ 52 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDP 52 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCC
Confidence 4578899999999999999999873 4568999999853
No 151
>PRK08233 hypothetical protein; Provisional
Probab=97.47 E-value=0.00034 Score=56.83 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=30.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
.++++.|.+|+||||+|..||..+. +.+++..|.+.+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~~ 41 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYDFD 41 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEEcc
Confidence 5677788889999999999998874 2478888887543
No 152
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.46 E-value=0.00044 Score=62.96 Aligned_cols=48 Identities=25% Similarity=0.349 Sum_probs=39.5
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++.++.+ .+..++++.|.+|+||||++..+|..+++.|.+|++|+...
T Consensus 71 LD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 71 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred HHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 4444432 23578899999999999999999999999999999999874
No 153
>PRK06696 uridine kinase; Validated
Probab=97.45 E-value=0.00024 Score=60.10 Aligned_cols=43 Identities=23% Similarity=0.144 Sum_probs=37.8
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.+.+.++.++|.+|+||||+|..|+..|...|.+|+.+.+|--
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 3456788999999999999999999999988999999888843
No 154
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.45 E-value=0.00018 Score=61.77 Aligned_cols=36 Identities=31% Similarity=0.329 Sum_probs=33.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
.-+++.|++|+|||+++.++|.++.+.|++|+++++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 457899999999999999999999999999999954
No 155
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.43 E-value=0.00075 Score=60.28 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=40.8
Q ss_pred cchhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC------CCcEEEEecCCCCCh
Q 023886 17 GSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHNL 70 (276)
Q Consensus 17 ~~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~------G~kVlliD~D~~~~l 70 (276)
..+..++.+ +...++.+.|.+|+|||+++.++|...+.. +.+|++||++-..+.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~ 150 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRP 150 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCH
Confidence 345556543 346788889999999999999999887642 359999999965443
No 156
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.43 E-value=0.00027 Score=58.64 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=36.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
...++++.|..|+||||++..|+..+...|..++++|.|...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 356777779999999999999999999889999999999743
No 157
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.38 E-value=0.00051 Score=64.27 Aligned_cols=41 Identities=27% Similarity=0.380 Sum_probs=37.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.+..++++.|.+|+||||++..+|..+++.|.+|++|+.+.
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 34678899999999999999999999999999999999874
No 158
>PRK04328 hypothetical protein; Provisional
Probab=97.38 E-value=0.0011 Score=57.00 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=41.3
Q ss_pred chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.|+.++.+ +...++.+.|.+|+|||+++.+++...++.|.++++|+++-.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 35555543 346778889999999999999999998889999999999854
No 159
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.37 E-value=0.00084 Score=62.74 Aligned_cols=48 Identities=27% Similarity=0.357 Sum_probs=40.2
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++.++.+ ....++++.|.+|+||||++..+|..+++.|.+|++++...
T Consensus 69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred HHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 4555543 33578899999999999999999999998899999999874
No 160
>PHA02542 41 41 helicase; Provisional
Probab=97.37 E-value=0.00027 Score=66.32 Aligned_cols=51 Identities=20% Similarity=0.085 Sum_probs=41.5
Q ss_pred chhhhh-cC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 18 SVRNIL-EQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 18 ~l~~~~-~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
.|..++ .+ .+..++++++.+|+||||++.|+|...++.|++|++++++...
T Consensus 178 ~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~ 230 (473)
T PHA02542 178 ILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAE 230 (473)
T ss_pred HHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCH
Confidence 455555 22 3346788999999999999999999999999999999999643
No 161
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.37 E-value=0.00024 Score=53.73 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=23.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVL 60 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVl 60 (276)
++++.|.+|+||||+|..||..+ |..++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~i 28 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPVI 28 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeEE
Confidence 47889999999999999999877 55554
No 162
>PF13479 AAA_24: AAA domain
Probab=97.36 E-value=0.00075 Score=56.72 Aligned_cols=31 Identities=35% Similarity=0.521 Sum_probs=26.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
.+++.|.+|+||||++..+ .++++||+|...
T Consensus 5 ~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~ 35 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL--------PKPLFIDTENGS 35 (213)
T ss_pred EEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCc
Confidence 3577799999999998887 689999999864
No 163
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.35 E-value=0.00023 Score=61.24 Aligned_cols=36 Identities=39% Similarity=0.507 Sum_probs=33.5
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++.|.+|+||||+|..||..+...|.+|.++|.|.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~ 37 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL 37 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence 688899999999999999999999999999998884
No 164
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.33 E-value=0.00031 Score=57.46 Aligned_cols=37 Identities=35% Similarity=0.310 Sum_probs=34.1
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
|+.++|..|+||||+|..|+..+...|.++.+|..|-
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Dd 37 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDD 37 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhh
Confidence 3678899999999999999999999999999999994
No 165
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.31 E-value=0.0021 Score=51.99 Aligned_cols=35 Identities=20% Similarity=0.106 Sum_probs=29.5
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.+.. ..|.||||.|..+|...+..|+||+++=.--
T Consensus 9 ~v~~-g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlK 43 (173)
T TIGR00708 9 IVHT-GNGKGKTTAAFGMALRALGHGKKVGVIQFIK 43 (173)
T ss_pred EEEC-CCCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 3443 4999999999999999999999999985543
No 166
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.30 E-value=0.00032 Score=55.51 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=34.1
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
+++.|.+|+||||+|..|+..+...|.++.++|.|...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 57789999999999999999999999999999988643
No 167
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.30 E-value=0.0011 Score=58.85 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=40.3
Q ss_pred cchhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCCCC
Q 023886 17 GSVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHN 69 (276)
Q Consensus 17 ~~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~~~ 69 (276)
..++.++.+ +...++.+.|.+|+||||++..+|...+. .+.+|+.||+.-..+
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~ 142 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFR 142 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCC
Confidence 346666653 34688889999999999999999988763 234999999986433
No 168
>PF13245 AAA_19: Part of AAA domain
Probab=97.30 E-value=0.00046 Score=48.12 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=32.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhC----CCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEV----RPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~----G~kVlliD~D 65 (276)
..+.++.|-+|.|||+++++++..+... |++|+++-..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 3456779999999999999999999866 8899999655
No 169
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.30 E-value=0.0016 Score=62.00 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=41.4
Q ss_pred chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 023886 18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~ 67 (276)
.|+.++.+ +...++++.|-+|+|||+++.+++...+++ |.+|++|.++-.
T Consensus 19 ~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~ 71 (509)
T PRK09302 19 GFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES 71 (509)
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 45566542 446888899999999999999999988887 999999999954
No 170
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.28 E-value=0.002 Score=51.43 Aligned_cols=30 Identities=23% Similarity=0.139 Sum_probs=26.3
Q ss_pred CCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 35 GKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 35 ~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
.-.|.||||.|..+|...+.+|+||++|=.
T Consensus 9 ~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQF 38 (159)
T cd00561 9 TGNGKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 344999999999999999999999999543
No 171
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=97.26 E-value=0.01 Score=50.33 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=36.2
Q ss_pred EEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhH
Q 023886 31 VFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72 (276)
Q Consensus 31 ~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~ 72 (276)
.++.| -.|.||-.+|+.++..|..+|++|-.+=+||.-|..-
T Consensus 4 ~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~ 46 (255)
T cd03113 4 FVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDP 46 (255)
T ss_pred EEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCC
Confidence 34545 7899999999999999999999999999999877543
No 172
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.25 E-value=0.0013 Score=64.77 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=43.2
Q ss_pred chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
.|+.++. + +..+++.+.|..|+||||++..++...++.|.+|+.||......
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~ 101 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD 101 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchh
Confidence 4666665 2 34688889999999999999999998889999999999986544
No 173
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.24 E-value=0.002 Score=58.04 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=38.5
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh---C---CCcEEEEecCCCCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE---V---RPSVLIISTDPAHN 69 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~---~---G~kVlliD~D~~~~ 69 (276)
|+.++.+ +...|.-+.|.+|+|||+++.++|...+. . +.+|+.||..-..+
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~ 173 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFR 173 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCC
Confidence 5555553 34688889999999999999999976652 1 36999999985433
No 174
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.21 E-value=0.0042 Score=51.89 Aligned_cols=48 Identities=23% Similarity=0.156 Sum_probs=39.3
Q ss_pred hhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 21 NILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 21 ~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
.+++.+..+++.+.|-.|+||||+...+...+. .+.+|.++..|+..+
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~ 62 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITK 62 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCc
Confidence 345566788888999999999999999988765 457999999998543
No 175
>PTZ00035 Rad51 protein; Provisional
Probab=97.21 E-value=0.0019 Score=58.17 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=38.1
Q ss_pred chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCC
Q 023886 18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~ 67 (276)
.++.++.+ +...++.+.|..|+||||++..++..... .+.+|+.||....
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~ 163 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT 163 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC
Confidence 35555543 34678888999999999999999876652 4569999999854
No 176
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.19 E-value=0.0018 Score=61.72 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=40.4
Q ss_pred chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.++.++.+ +...++.+.|.+|+|||+++.+++...++.|.+|++|+++-.
T Consensus 261 ~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~ 312 (509)
T PRK09302 261 DLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEES 312 (509)
T ss_pred HHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 45555542 235667778999999999999999999999999999999853
No 177
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.17 E-value=0.00056 Score=56.19 Aligned_cols=40 Identities=33% Similarity=0.387 Sum_probs=31.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHh----------CCCcEEEEecCCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAE----------VRPSVLIISTDPAH 68 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~----------~G~kVlliD~D~~~ 68 (276)
.+.++.|.+|+||||++.++|.+++. .+.+|++|++|...
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 46788899999999999999999997 57899999999764
No 178
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.17 E-value=0.0007 Score=57.76 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=37.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~ 67 (276)
...+++++|.+|+|||+++.+++..++.. |.+|+.++++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 34678999999999999999999999987 999999999964
No 179
>PHA00729 NTP-binding motif containing protein
Probab=97.17 E-value=0.00075 Score=56.94 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=31.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH-------------hCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLA-------------EVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la-------------~~G~kVlliD~D~ 66 (276)
..-+++.|.+|+||||+|..+|..+. ..|++++.+|.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~ 68 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPD 68 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHH
Confidence 34467889999999999999999875 4567788888763
No 180
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.17 E-value=0.00081 Score=52.69 Aligned_cols=36 Identities=33% Similarity=0.161 Sum_probs=28.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEE-EEecCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVL-IISTDP 66 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVl-liD~D~ 66 (276)
|.|+ |.-|+||||++..|...|.++|+||. +.|.|.
T Consensus 3 v~Vv-G~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 3 VQVV-GPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 3444 55699999999999999999999999 889998
No 181
>PRK06762 hypothetical protein; Provisional
Probab=97.17 E-value=0.00055 Score=54.92 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=30.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++++++.|..|+||||+|..|+..+ |..+.+++.|.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~ 37 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDV 37 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHH
Confidence 4677888999999999999999887 45688888774
No 182
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.15 E-value=0.00064 Score=59.09 Aligned_cols=41 Identities=24% Similarity=0.186 Sum_probs=36.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~ 67 (276)
...++++.|.+|+||||++.++|..++.. |.+|++++++..
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~ 70 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP 70 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence 34678899999999999999999999887 999999999853
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.14 E-value=0.0012 Score=59.89 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=32.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHH--HhCCCcEEEEecCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILL--AEVRPSVLIISTDP 66 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~l--a~~G~kVlliD~D~ 66 (276)
+++++.|-+|+|||.++.+++..+ ...+.+++++-...
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~ 41 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNH 41 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecc
Confidence 578999999999999999999999 77788887776553
No 184
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.11 E-value=0.0029 Score=50.65 Aligned_cols=40 Identities=23% Similarity=0.095 Sum_probs=33.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
++|+=+.|.-|+||||+...+...|.++|+||.+|=-...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 4566566788999999999999999999999999965543
No 185
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.10 E-value=0.0014 Score=55.57 Aligned_cols=36 Identities=25% Similarity=0.038 Sum_probs=31.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
+++.+.|..|+||||++..|+..|.++|+||.+|..
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 456566667999999999999999999999999954
No 186
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.09 E-value=0.0033 Score=56.65 Aligned_cols=52 Identities=19% Similarity=0.170 Sum_probs=38.3
Q ss_pred chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCCCC
Q 023886 18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHN 69 (276)
Q Consensus 18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~~~ 69 (276)
.++.++.+ ....++.+.|.+|+|||+++.++|...+. .+.+|+.||++-..+
T Consensus 111 ~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~ 170 (342)
T PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFR 170 (342)
T ss_pred HHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCcc
Confidence 35555543 34678889999999999999999976542 224899999996544
No 187
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.09 E-value=0.0011 Score=57.35 Aligned_cols=49 Identities=27% Similarity=0.252 Sum_probs=42.5
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
|+.++.+ +...++++.|.+|+|||+++.+++...++.|.+|++|.+|-.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 4555553 557888999999999999999999999999999999999964
No 188
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.08 E-value=0.0008 Score=58.13 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=31.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
+++.|++|+|||.+|+++|..+.+.|.+|+++..
T Consensus 108 l~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 6788999999999999999999988999999854
No 189
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.06 E-value=0.0052 Score=50.49 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=32.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.+.+.+-.|.||||.|..+|...+..|+||++|=.=-.
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg 61 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKG 61 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC
Confidence 45566788999999999999999999999999976543
No 190
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.05 E-value=0.0084 Score=53.38 Aligned_cols=50 Identities=16% Similarity=0.056 Sum_probs=35.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh--hHHhccc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL--SDAFQQR 77 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l--~~~l~~~ 77 (276)
-+|+-+.|..|+||||++..+...+.+.|..++.||.....+. ...+|.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvd 104 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGVD 104 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT--
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCcc
Confidence 4666555778999999999999999889999999999866543 3334443
No 191
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.01 E-value=0.0012 Score=53.56 Aligned_cols=39 Identities=26% Similarity=0.275 Sum_probs=34.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
..++++.|-.|+||||++..|+..|...+..+.++|.|.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 457788999999999999999999998888899998764
No 192
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.00 E-value=0.0015 Score=53.38 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=36.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.+..++++.|..|+||||++..|+..+...|..++++|.|.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~ 56 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN 56 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH
Confidence 34567889999999999999999999988888899999885
No 193
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.00066 Score=56.06 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=35.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.+++++|-+|+||||.|-+||..|.+.+.+|.-+..|-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~ 40 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL 40 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh
Confidence 457888999999999999999999999999998888743
No 194
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=96.99 E-value=0.0033 Score=57.87 Aligned_cols=36 Identities=22% Similarity=0.061 Sum_probs=30.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
+|+-+.|+-|+||||+...|...|.++|+||.+|=-
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH 37 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKH 37 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 455455656999999999999999999999999643
No 195
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.98 E-value=0.0011 Score=54.24 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=29.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
=+++.|..|+|||.+|..+|..+.+.|++|+.++.
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 36677889999999999999999999999999975
No 196
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.95 E-value=0.0046 Score=55.15 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=38.1
Q ss_pred chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh---CC---CcEEEEecCCCCC
Q 023886 18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE---VR---PSVLIISTDPAHN 69 (276)
Q Consensus 18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~---~G---~kVlliD~D~~~~ 69 (276)
.++.++.+ +...|+.+.|.+|+||||++..++...+. .| .+|+.||.....+
T Consensus 84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~ 143 (316)
T TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFR 143 (316)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCC
Confidence 35554443 44788889999999999999999874432 33 4899999986533
No 197
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.95 E-value=0.00099 Score=59.80 Aligned_cols=36 Identities=31% Similarity=0.297 Sum_probs=33.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDP 66 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~ 66 (276)
.++.|-+|+||||++..|+..|. ..|.+|.++|.|-
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd 38 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDD 38 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccc
Confidence 57889999999999999999998 5899999999994
No 198
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.0018 Score=50.77 Aligned_cols=57 Identities=25% Similarity=0.390 Sum_probs=43.9
Q ss_pred hhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccc
Q 023886 20 RNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQR 77 (276)
Q Consensus 20 ~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~ 77 (276)
++++.+++.. +-+.|-.|.||||+|++|..+|-++|+-.-.+|.|. .+++..-||.+
T Consensus 24 q~l~~qkGcv-iWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~ 81 (207)
T KOG0635|consen 24 QKLLKQKGCV-IWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFK 81 (207)
T ss_pred HHHhcCCCcE-EEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcc
Confidence 3455566554 455589999999999999999999999999999996 56665555443
No 199
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.93 E-value=0.0022 Score=51.37 Aligned_cols=39 Identities=31% Similarity=0.216 Sum_probs=33.6
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+++.+.|..|+||||++..|...|...|++|..|-.|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 466677778999999999999999999999999876643
No 200
>PRK06526 transposase; Provisional
Probab=96.92 E-value=0.00065 Score=58.68 Aligned_cols=35 Identities=29% Similarity=0.255 Sum_probs=30.8
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
-+++.|++|+|||++|.++|..+.+.|++|+.+.+
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 46788999999999999999999999999987533
No 201
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.91 E-value=0.1 Score=43.58 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=36.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+-..++.+=|-.|.|||-++..+++-+-..|++|.++....
T Consensus 26 P~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~ 66 (235)
T COG2874 26 PVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTEL 66 (235)
T ss_pred ccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEech
Confidence 33577888899999999999999999999999999998863
No 202
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.90 E-value=0.0048 Score=54.07 Aligned_cols=49 Identities=18% Similarity=0.115 Sum_probs=39.9
Q ss_pred hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
.+..++.++..++-+.|.+|+||||+...+...+... +++.+|+.|...
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t 143 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQT 143 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCc
Confidence 4555566777788888999999999999999988765 589999999753
No 203
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.89 E-value=0.0015 Score=56.42 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=35.2
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
+.++|-.|+||||++..++..|.+.|.+|.+|+.|.-+.
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 556889999999999999999999999999999997654
No 204
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.88 E-value=0.0019 Score=44.00 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=28.1
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
+++.|..|+||||++..|+..+ .|.++.++|.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 5667999999999999999999 6788888876
No 205
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.027 Score=49.22 Aligned_cols=46 Identities=22% Similarity=0.094 Sum_probs=38.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA 73 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~ 73 (276)
.+|+=+-|-.|+||||+|..++....+.|.+|..||+.-.-.....
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~ 105 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERA 105 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHH
Confidence 5677677899999999999999999999999999999866554433
No 206
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.85 E-value=0.0022 Score=53.59 Aligned_cols=39 Identities=28% Similarity=0.294 Sum_probs=33.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
...++.++|.+|+||||++..|+..+ .+.++.+++.|..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCcc
Confidence 35677888999999999999999988 4568999999964
No 207
>PRK05439 pantothenate kinase; Provisional
Probab=96.85 E-value=0.0023 Score=56.78 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=35.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPA 67 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D~~ 67 (276)
+.+.|+.++|-+|+||||+|..|+..+.+. |.+|.+|..|--
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 345677899999999999999999988764 789999999943
No 208
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.85 E-value=0.0018 Score=56.06 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=38.9
Q ss_pred hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q 023886 19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAH 68 (276)
Q Consensus 19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~~ 68 (276)
|..++.+ .+..+.++.+.+|+|||+++.++|..++.. |.+|+++.++...
T Consensus 9 LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~ 60 (259)
T PF03796_consen 9 LDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSE 60 (259)
T ss_dssp HHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-H
T ss_pred HHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCH
Confidence 4444432 334678999999999999999999999987 6999999999653
No 209
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.84 E-value=0.0016 Score=49.91 Aligned_cols=47 Identities=23% Similarity=0.221 Sum_probs=37.6
Q ss_pred hhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 22 ~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
.+.......+++.|.+|+|||+++..++..+...+.+|..++.....
T Consensus 13 ~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 13 ALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred HHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 33343456678899999999999999999998888889988876543
No 210
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.83 E-value=0.0019 Score=54.38 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=39.4
Q ss_pred chhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 18 ~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.++.+........+++.|+.|+|||+++..++..+.+.|.+++.++++.
T Consensus 28 ~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 28 ALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred HHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 3444443445667788899999999999999999888899999999874
No 211
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.83 E-value=0.0016 Score=55.33 Aligned_cols=58 Identities=19% Similarity=0.160 Sum_probs=43.2
Q ss_pred hhccccccchhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEE-EecCCC
Q 023886 10 QELEIPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLI-ISTDPA 67 (276)
Q Consensus 10 ~~~~~~~~~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVll-iD~D~~ 67 (276)
+.+..+...|...... ....++.+.|..|+||||++..|+..+...+..+.+ |..|..
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 3344444555555444 556777889999999999999999999988777766 888753
No 212
>PRK15453 phosphoribulokinase; Provisional
Probab=96.83 E-value=0.0022 Score=55.81 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=36.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
..|+.+.|-.|+||||+|..|+..|...|.++.+|+.|..+.
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 345677899999999999999999988888999999997553
No 213
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.80 E-value=0.0025 Score=53.94 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=39.5
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
++.++.+ +...++++.|.+|+||||++.+++...++.|.+|++++++..
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 4454432 345778888999999999999999888889999999999743
No 214
>PRK00089 era GTPase Era; Reviewed
Probab=96.80 E-value=0.016 Score=50.90 Aligned_cols=32 Identities=31% Similarity=0.485 Sum_probs=22.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.+.+-|.+|+||||+.-.|. |.++..+.-.++
T Consensus 7 ~V~iiG~pn~GKSTLin~L~------g~~~~~vs~~~~ 38 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQ 38 (292)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCceeecCCCCC
Confidence 35667999999999987764 566665554443
No 215
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.80 E-value=0.0027 Score=53.64 Aligned_cols=49 Identities=22% Similarity=0.160 Sum_probs=39.6
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
++.++.+ +...++.+.|.+|+|||+++.+++...+++|.+|++++++-.
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER 55 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 4455432 235677778899999999999999998889999999999864
No 216
>PRK12377 putative replication protein; Provisional
Probab=96.80 E-value=0.002 Score=55.41 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=33.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.-+++.|..|+|||.+|.++|..+.+.|++|+.+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 3468889999999999999999999999999988764
No 217
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=96.79 E-value=0.012 Score=51.14 Aligned_cols=41 Identities=20% Similarity=0.074 Sum_probs=25.6
Q ss_pred eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD 266 (276)
Q Consensus 225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~ 266 (276)
+.+++|..+.......+..+++.+...+++. -+++|++-..
T Consensus 89 D~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~-iivvNK~D~~ 129 (268)
T cd04170 89 DAALVVVSAQSGVEVGTEKLWEFADEAGIPR-IIFINKMDRE 129 (268)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECCccC
Confidence 4466666665555556666677777777665 4577877544
No 218
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.78 E-value=0.0026 Score=54.31 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=40.5
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
|+.++.+ ++..++.+.|.+|+|||++|.++++..++.|.+|++|.++-.
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 4454432 346778899999999999999999998899999999999853
No 219
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.78 E-value=0.0065 Score=50.88 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=20.8
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRP 57 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~ 57 (276)
+++.|..|+||||++-+|.......++
T Consensus 3 v~iiG~~~~GKTtL~~~l~~~~~~~~~ 29 (213)
T cd04167 3 VAIAGHLHHGKTSLLDMLIEQTHDLTP 29 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCcc
Confidence 456699999999999999876554443
No 220
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0022 Score=50.95 Aligned_cols=32 Identities=34% Similarity=0.353 Sum_probs=28.9
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLII 62 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli 62 (276)
++++|.+||||||++.-+|-.|.+.|++|.=+
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf 39 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGF 39 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeE
Confidence 57779999999999999999999999998744
No 221
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.77 E-value=0.0022 Score=59.62 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=40.1
Q ss_pred chhhhhc-CCceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC
Q 023886 18 SVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~ 67 (276)
.|..++. -.+..++++.|.+|+|||+++.++|..+| +.|++|++++++..
T Consensus 183 ~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~ 234 (421)
T TIGR03600 183 KLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS 234 (421)
T ss_pred hHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 3444443 23356789999999999999999999998 67999999999953
No 222
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.74 E-value=0.002 Score=56.13 Aligned_cols=37 Identities=35% Similarity=0.364 Sum_probs=29.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
-+++++|-+|+||||.|..|+..+.+.|++|.+|+-|
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~ 38 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD 38 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 4578999999999999999999999999999999965
No 223
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.73 E-value=0.0017 Score=55.39 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=39.1
Q ss_pred hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++.+........+++.|..|+|||+++..+|..+.+.|++|..+.+|.
T Consensus 36 l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 36 LQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 344433444456789999999999999999999998999999999985
No 224
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.72 E-value=0.0021 Score=53.11 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=32.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCc----EEEEecCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPS----VLIISTDP 66 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~k----VlliD~D~ 66 (276)
|+.++|-+|+||||+|..|+..|.+.|.. +.++..|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~ 41 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDD 41 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecc
Confidence 56788999999999999999999998877 77777774
No 225
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.70 E-value=0.038 Score=43.15 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
.+.+.|..|+||||+...+. |.++..+.
T Consensus 5 ~i~~~G~~g~GKttl~~~l~------~~~~~~~~ 32 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALV------GQKISIVS 32 (168)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCceEecc
Confidence 35667999999999988875 45555443
No 226
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.68 E-value=0.007 Score=52.38 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=40.5
Q ss_pred chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCCCChhHHhc
Q 023886 18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPAHNLSDAFQ 75 (276)
Q Consensus 18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~~~l~~~l~ 75 (276)
.|+.++.+ ....|.=+.|.+|+|||.++..||....- .+.+|+.||.+-..+...+..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~ 91 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ 91 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH
Confidence 34555543 22456656789999999999999976541 356899999998766555543
No 227
>PRK05595 replicative DNA helicase; Provisional
Probab=96.65 E-value=0.0029 Score=59.19 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=35.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~ 67 (276)
..++++.|.+|+|||+++.|+|..+| +.|++|+++.+...
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms 241 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS 241 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 56788999999999999999999887 57999999999854
No 228
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.63 E-value=0.014 Score=53.22 Aligned_cols=39 Identities=26% Similarity=0.107 Sum_probs=34.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++++-+.|..|+||||+...|...|.++|+||.+|=-|.
T Consensus 205 ~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 205 PPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 567777789999999999999999999999999997654
No 229
>PRK08506 replicative DNA helicase; Provisional
Probab=96.61 E-value=0.0033 Score=59.24 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=37.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+..++++.+.+|+|||+++.|+|...++.|++|+++.++..
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs 231 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMP 231 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCC
Confidence 35688999999999999999999999999999999999954
No 230
>COG4240 Predicted kinase [General function prediction only]
Probab=96.60 E-value=0.0037 Score=52.48 Aligned_cols=41 Identities=29% Similarity=0.318 Sum_probs=37.5
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCC-CcEEEEecC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVR-PSVLIISTD 65 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G-~kVlliD~D 65 (276)
...+-|+.+||.-|+||||+|+.+-..|+++| .+|+-+.+|
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLD 88 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLD 88 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehh
Confidence 34577889999999999999999999999998 799999999
No 231
>PRK09183 transposase/IS protein; Provisional
Probab=96.60 E-value=0.0031 Score=54.68 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=31.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
..+++.|..|+|||+++..+|..+...|++|+.+++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 345677999999999999999998889999998863
No 232
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.58 E-value=0.011 Score=55.93 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=39.4
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDP 66 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~ 66 (276)
++.++.+ +..+++.+.|-+|+||||+|.+++..-+++ |.++++|.++-
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 4555543 346788999999999999999999887766 99999999983
No 233
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.57 E-value=0.0034 Score=53.05 Aligned_cols=37 Identities=35% Similarity=0.518 Sum_probs=31.9
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHh--CCCcEEEEecCCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTDPA 67 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~--~G~kVlliD~D~~ 67 (276)
+-++|..|+||||+|..|+..+.. .+.+|.+|..|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 556799999999999999999986 5678999999954
No 234
>PF13173 AAA_14: AAA domain
Probab=96.52 E-value=0.0036 Score=48.01 Aligned_cols=40 Identities=33% Similarity=0.350 Sum_probs=34.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
.+++++.|.-||||||++.+++..+. ...+++.+|+|-..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPR 41 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHH
Confidence 56788999999999999999998877 66789999999543
No 235
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.50 E-value=0.0032 Score=52.71 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=27.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHH--------HhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILL--------AEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~l--------a~~G~kVlliD~D 65 (276)
+.+++|.+|+||||+.+.+...+ ...+++||++.--
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~s 62 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPS 62 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESS
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCC
Confidence 67999999999999999999988 4567888877543
No 236
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.49 E-value=0.0038 Score=51.62 Aligned_cols=35 Identities=37% Similarity=0.482 Sum_probs=30.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
|+.++|..|+||||++..|+..+ .+.++.++..|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~ 35 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDS 35 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence 35778999999999999999888 566899999994
No 237
>PRK06749 replicative DNA helicase; Provisional
Probab=96.49 E-value=0.0038 Score=58.03 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=37.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+..++++.+.+|+|||+++.|+|...|+.|++|+++.++..
T Consensus 185 ~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs 225 (428)
T PRK06749 185 EGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMS 225 (428)
T ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCC
Confidence 35678899999999999999999999999999999999964
No 238
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.48 E-value=0.0034 Score=56.28 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=33.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.-+++.|..|+|||.++..+|..+...|++|+.++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 5578889999999999999999999999999999874
No 239
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.48 E-value=0.0042 Score=55.17 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=33.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
.+=+++.|..|+|||.++.++|..+++.|++|.++..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~ 192 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF 192 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH
Confidence 3457888999999999999999999999999999876
No 240
>PRK08760 replicative DNA helicase; Provisional
Probab=96.46 E-value=0.004 Score=58.68 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=36.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAH 68 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~ 68 (276)
+..++++.+.+|+|||+++.|+|...|. .|++|+++.++...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA 270 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence 3578899999999999999999999885 59999999998643
No 241
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.46 E-value=0.0087 Score=49.20 Aligned_cols=36 Identities=33% Similarity=0.476 Sum_probs=32.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
+++++-|-.|+||||.+..|+.++...|++|..+-.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 568888999999999999999999999999987644
No 242
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.46 E-value=0.0049 Score=57.45 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=36.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~ 67 (276)
+..+++++|.+|+|||+++.++|..++. .|++|+++.++..
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~ 235 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMS 235 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCC
Confidence 3568899999999999999999999986 6999999999964
No 243
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=96.44 E-value=0.036 Score=44.99 Aligned_cols=48 Identities=19% Similarity=0.081 Sum_probs=34.3
Q ss_pred chhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
++-.....+++..+++ -.|=||||.|..+|...+-.|+||++|=.=-.
T Consensus 13 ~~~~~~~~~Gli~VYt--GdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg 60 (178)
T PRK07414 13 SLPLPYTIEGLVQVFT--SSQRNFFTSVMAQALRIAGQGTPVLIVQFLKG 60 (178)
T ss_pred ccccCCCCCCEEEEEe--CCCCCchHHHHHHHHHHhcCCCEEEEEEEecC
Confidence 3433444444444443 35679999999999999999999999976543
No 244
>PRK08727 hypothetical protein; Validated
Probab=96.44 E-value=0.0051 Score=52.44 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=35.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
....+++.|+.|+|||.++..++..+.+.|++|..+.++.
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 3455899999999999999999999999999999998753
No 245
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.44 E-value=0.0031 Score=51.06 Aligned_cols=58 Identities=26% Similarity=0.272 Sum_probs=39.2
Q ss_pred hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
++++.+...+. .......+++++.|..|+|||++...+...+.+.+.-++-+++++..
T Consensus 7 ~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~~ 64 (185)
T PF13191_consen 7 EEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDSE 64 (185)
T ss_dssp HHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETTT
T ss_pred HHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeccc
Confidence 45555666666 45556678899999999999999999999999875458888888873
No 246
>COG1159 Era GTPase [General function prediction only]
Probab=96.43 E-value=0.041 Score=48.00 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=28.5
Q ss_pred EEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHh
Q 023886 32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF 74 (276)
Q Consensus 32 v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l 74 (276)
-+-|++.|||||+--+| .|.|+.++.-=||.+-....
T Consensus 10 aIiGrPNvGKSTLlN~l------~G~KisIvS~k~QTTR~~I~ 46 (298)
T COG1159 10 AIIGRPNVGKSTLLNAL------VGQKISIVSPKPQTTRNRIR 46 (298)
T ss_pred EEEcCCCCcHHHHHHHH------hcCceEeecCCcchhhhhee
Confidence 34589999999987665 48999999888887644443
No 247
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.43 E-value=0.026 Score=49.19 Aligned_cols=41 Identities=12% Similarity=0.051 Sum_probs=28.6
Q ss_pred eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD 266 (276)
Q Consensus 225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~ 266 (276)
+.+++|.-.....-.++.+.++.+++.++++. +++|++-..
T Consensus 89 D~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~ 129 (270)
T cd01886 89 DGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRT 129 (270)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 45666655544445566788888888898874 789988543
No 248
>PRK08006 replicative DNA helicase; Provisional
Probab=96.42 E-value=0.005 Score=57.97 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=36.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~ 67 (276)
+..++++.+.+|+|||++|.|+|..+|. .|++|+++.+...
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~ 264 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP 264 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 3577889999999999999999999984 6999999999954
No 249
>PF05729 NACHT: NACHT domain
Probab=96.40 E-value=0.0036 Score=49.57 Aligned_cols=29 Identities=34% Similarity=0.534 Sum_probs=25.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRP 57 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~ 57 (276)
|++++.|.+|+||||++..++..++..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCc
Confidence 46889999999999999999999998753
No 250
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.39 E-value=0.0036 Score=50.22 Aligned_cols=33 Identities=30% Similarity=0.259 Sum_probs=26.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+.+++.|.+|+||||+|..||..+ | .-++|.|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l---~--~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL---G--YDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh---C--CCEEECh
Confidence 4567888999999999999999887 4 3455776
No 251
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.37 E-value=0.0056 Score=50.12 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=31.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++-|..|+||||++..|+..+...|++|..+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~ 37 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP 37 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 467789999999999999999999999999776543
No 252
>PRK06893 DNA replication initiation factor; Validated
Probab=96.37 E-value=0.0048 Score=52.41 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=34.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
..++..|+.|+|||+++..+|..+.++|++|..++++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 4568889999999999999999999999999999986
No 253
>PRK05642 DNA replication initiation factor; Validated
Probab=96.36 E-value=0.0048 Score=52.64 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=34.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
..+++.|+.|+|||.++..++..+.+.|++|+.++++-
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 45788999999999999999999998899999999873
No 254
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=96.35 E-value=0.092 Score=52.73 Aligned_cols=37 Identities=14% Similarity=0.017 Sum_probs=34.7
Q ss_pred EEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccc
Q 023886 227 FVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (276)
Q Consensus 227 ~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~ 263 (276)
+|+|+.+.--.+..+.-.++.|+..|+++.|+|+|..
T Consensus 217 vILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~ 253 (817)
T PLN02974 217 AILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDH 253 (817)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCC
Confidence 8999999999999999999999999999999999963
No 255
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.35 E-value=0.0027 Score=49.34 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=26.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++++.|.+|+||||++..|+..+. ..+||.|.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~ 32 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE 32 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence 478899999999999988875544 66788875
No 256
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0035 Score=49.84 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=20.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHH
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
++.+||++|+||||+|.-||..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 467899999999999999887654
No 257
>PRK08181 transposase; Validated
Probab=96.29 E-value=0.0052 Score=53.52 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=32.1
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
-+++.|..|+|||.++..+|..+.+.|++|+.+.+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 37788999999999999999999999999999875
No 258
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.28 E-value=0.0071 Score=51.11 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=35.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
...+++.|..|+|||+++..++..+...|.++..+++..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 456789999999999999999999988999999999865
No 259
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.27 E-value=0.0042 Score=48.83 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=27.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
|++++|.+|+||||+|..|+..+ | ..++|.|.-.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~---~--~~~i~~D~~~ 34 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL---G--APFIDGDDLH 34 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc---C--CEEEeCcccc
Confidence 36788999999999999998764 3 4567888644
No 260
>PRK08840 replicative DNA helicase; Provisional
Probab=96.25 E-value=0.0067 Score=56.98 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=39.6
Q ss_pred hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 023886 19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA 67 (276)
Q Consensus 19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~ 67 (276)
|..++.+ .+..++++.+.+|+|||+++.|+|...|. .|++|+++.+...
T Consensus 207 LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs 257 (464)
T PRK08840 207 LNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP 257 (464)
T ss_pred HHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 4444432 33577889999999999999999999984 6999999999954
No 261
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.25 E-value=0.1 Score=43.17 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=20.6
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVR 56 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G 56 (276)
+.+-|..++||||++-.|-......|
T Consensus 5 i~iiGh~~~GKTTL~~~Ll~~~~~~g 30 (195)
T cd01884 5 VGTIGHVDHGKTTLTAAITKVLAKKG 30 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 45668999999999999987654444
No 262
>PRK06547 hypothetical protein; Provisional
Probab=96.25 E-value=0.0054 Score=49.77 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=28.1
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
...+.++.+.|..|+||||+|..||..+ | +.++++|
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~---~--~~~~~~d 47 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART---G--FQLVHLD 47 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh---C--CCeeccc
Confidence 4556777888999999999999998763 3 4566777
No 263
>PRK05748 replicative DNA helicase; Provisional
Probab=96.25 E-value=0.0063 Score=57.00 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=36.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAH 68 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~ 68 (276)
+..+++++|.+|+|||+++.++|...|. .|++|+++.++...
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~ 244 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGA 244 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCH
Confidence 3567899999999999999999999885 59999999999643
No 264
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.25 E-value=0.0041 Score=51.60 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=29.7
Q ss_pred cCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 24 EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 24 ~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.+..++++++.|.+|+||||++..+...+. +.....||.|-
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~ 51 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADE 51 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHH
Confidence 455688899999999999999998877766 66788999994
No 265
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.23 E-value=0.11 Score=43.88 Aligned_cols=39 Identities=8% Similarity=-0.008 Sum_probs=25.3
Q ss_pred eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc
Q 023886 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL 264 (276)
Q Consensus 225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~ 264 (276)
+.+++|.-.+.....+..+.+..+...++++ -+|+|++-
T Consensus 111 D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D 149 (224)
T cd04165 111 DYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKID 149 (224)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECcc
Confidence 4455555555545566677777777777775 57777764
No 266
>PRK06904 replicative DNA helicase; Validated
Probab=96.22 E-value=0.0067 Score=57.13 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=36.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~ 67 (276)
+..++++.+.+|+|||+++.|+|...|. .|++|+++.+...
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs 261 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP 261 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 3567889999999999999999999885 5999999999954
No 267
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.20 E-value=0.012 Score=45.59 Aligned_cols=45 Identities=29% Similarity=0.305 Sum_probs=38.2
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcccc
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF 78 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~ 78 (276)
++..|..|+|||+++..+|..+ +.++..+.+.......+++|.-.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~dl~g~~~ 46 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEEDLIGSYD 46 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHHHHCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccccccceeeee
Confidence 4567899999999999999998 88999999999888888887543
No 268
>PF12846 AAA_10: AAA-like domain
Probab=96.20 E-value=0.01 Score=51.81 Aligned_cols=41 Identities=37% Similarity=0.426 Sum_probs=34.5
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHH
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA 73 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~ 73 (276)
+++.|+.|+||||++.++...+...|.+++++ |+.+....+
T Consensus 4 ~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~--D~~g~~~~~ 44 (304)
T PF12846_consen 4 TLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF--DPKGDYSPL 44 (304)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE--cCCchHHHH
Confidence 46779999999999999999999999999999 555554443
No 269
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.20 E-value=0.0068 Score=53.32 Aligned_cols=43 Identities=30% Similarity=0.329 Sum_probs=35.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecCCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPAH 68 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D~~~ 68 (276)
+.+.|+-+.|..|+||||+|..|...+.+. +.+|.++..|...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 446778899999999999999998888753 4589999999643
No 270
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.16 E-value=0.0036 Score=47.77 Aligned_cols=46 Identities=24% Similarity=0.337 Sum_probs=34.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhC-----CCcEEEEecCCCCChhHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEV-----RPSVLIISTDPAHNLSDA 73 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~-----G~kVlliD~D~~~~l~~~ 73 (276)
.+++++.|..|+|||+++.+++..+... ..+|+.+++....+...+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDF 54 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHH
Confidence 4668999999999999999999999864 678888888876654433
No 271
>PRK06321 replicative DNA helicase; Provisional
Probab=96.16 E-value=0.0079 Score=56.62 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=39.5
Q ss_pred hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC
Q 023886 19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (276)
Q Consensus 19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~ 67 (276)
|..++.+ .+..++++.+.+|+|||+++.++|..+| +.|++|+++.+...
T Consensus 216 LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs 266 (472)
T PRK06321 216 LDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMT 266 (472)
T ss_pred HHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 4455432 2346788999999999999999999998 46999999999964
No 272
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.15 E-value=0.063 Score=42.79 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=28.4
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+.+++|--|+||||+...+.... .|.++.++-.|.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~ 36 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEF 36 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCC
Confidence 46788999999999999887653 488998887664
No 273
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.14 E-value=0.061 Score=41.82 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.7
Q ss_pred EeCCCCchHHHHHHHHH
Q 023886 33 VGGKGGVGKTTCSSILS 49 (276)
Q Consensus 33 ~s~kGGvGKTT~a~~lA 49 (276)
+.|.+|+||||+...|.
T Consensus 2 l~G~~~~GKssl~~~l~ 18 (157)
T cd01894 2 IVGRPNVGKSTLFNRLT 18 (157)
T ss_pred ccCCCCCCHHHHHHHHh
Confidence 45899999999998886
No 274
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.13 E-value=0.0089 Score=49.54 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=31.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.++.++.|.+|+||||+...++..+...|++|+++-.-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 46678889999999999999999999999999988544
No 275
>PRK09165 replicative DNA helicase; Provisional
Probab=96.12 E-value=0.0082 Score=56.95 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=38.9
Q ss_pred hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhC---------------CCcEEEEecCCC
Q 023886 19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV---------------RPSVLIISTDPA 67 (276)
Q Consensus 19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~---------------G~kVlliD~D~~ 67 (276)
|..++.+ .+..++++.+.+|+||||++.|+|...|.. |++|+++.+...
T Consensus 207 LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs 271 (497)
T PRK09165 207 LDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS 271 (497)
T ss_pred HhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC
Confidence 4444432 334678899999999999999999999853 789999999964
No 276
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=96.11 E-value=0.036 Score=53.77 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=34.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++++-+.|..|+||||+...|...|.++|+||..|--|.
T Consensus 10 ~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 10 IPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 567777788999999999999999999999999998753
No 277
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=96.10 E-value=0.044 Score=46.82 Aligned_cols=22 Identities=23% Similarity=0.087 Sum_probs=17.9
Q ss_pred EEEeCCCCchHHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+.+.|.+|+||||++-.|....
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~ 23 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTS 23 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 3456899999999999887753
No 278
>PRK06921 hypothetical protein; Provisional
Probab=96.09 E-value=0.0086 Score=52.13 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=32.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEec
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIST 64 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~ 64 (276)
..-+++.|..|+|||.++.++|..+.++ |++|+.+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3446778999999999999999999988 999999885
No 279
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.06 E-value=0.053 Score=47.18 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=18.9
Q ss_pred EEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 32 v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
.+-|.+||||||+.-.|. |.++..+.
T Consensus 4 ~liG~pnvGKSTLln~L~------~~~~~~vs 29 (270)
T TIGR00436 4 AILGRPNVGKSTLLNQLH------GQKISITS 29 (270)
T ss_pred EEECCCCCCHHHHHHHHh------CCcEeecC
Confidence 344899999999988876 45655443
No 280
>PRK08116 hypothetical protein; Validated
Probab=96.05 E-value=0.0098 Score=51.83 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=32.5
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
.-+++.|..|+|||.+|..+|..+.++|++|++++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 347888999999999999999999999999999974
No 281
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.075 Score=47.11 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=37.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhC----CCcEEEEecCCCCChhHHhc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEV----RPSVLIISTDPAHNLSDAFQ 75 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~----G~kVlliD~D~~~~l~~~l~ 75 (276)
.|++...|.+|.|||+++-+||..|+-+ -++..+|+.....=.+.+|+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFs 228 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFS 228 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHh
Confidence 5888899999999999999999999832 34677777766655666664
No 282
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.023 Score=50.11 Aligned_cols=40 Identities=35% Similarity=0.330 Sum_probs=31.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHh----CC------CcEEEEecCCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAE----VR------PSVLIISTDPAH 68 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~----~G------~kVlliD~D~~~ 68 (276)
..+|+.|-||+||||++..|..+|+. .| .+|++|.+....
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~r 139 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYR 139 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccCh
Confidence 34577799999999999999998883 25 379999888654
No 283
>PRK06217 hypothetical protein; Validated
Probab=96.03 E-value=0.0077 Score=49.21 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=25.8
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.+++.|-+|+||||+|..||..+ |.. .+|+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l---~~~--~~~~D~ 34 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL---DIP--HLDTDD 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCc--EEEcCc
Confidence 36778999999999999999766 443 688884
No 284
>PRK06851 hypothetical protein; Provisional
Probab=96.02 E-value=0.013 Score=53.10 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=36.2
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+...++.++.|.+|+||||+...++..+.++|.+|.+.=+-
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 44578899999999999999999999999999999988543
No 285
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.02 E-value=0.011 Score=49.43 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=32.1
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.+...++.+.|..|+||||++..|+..+.. ..+.++..|..
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 344677889999999999999999987754 45777777753
No 286
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=96.01 E-value=0.014 Score=50.42 Aligned_cols=42 Identities=31% Similarity=0.346 Sum_probs=36.9
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCc--EEEEecCC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPS--VLIISTDP 66 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~k--VlliD~D~ 66 (276)
...+-|+.+.|..||||||+|..|+..+++.+.+ |-+|-+|-
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDG 122 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDG 122 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccc
Confidence 4557788899999999999999999999998765 99999993
No 287
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.99 E-value=0.012 Score=54.03 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=35.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.+.|+.++|..|+||||++..|...+...|.+|..|..|-
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD 250 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD 250 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence 4677789999999999999999988887889999998884
No 288
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.98 E-value=0.011 Score=57.83 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=38.2
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.....++++.|.+|+||||+|..|+..|...|..+.++|.|.-
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~ 499 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNV 499 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhh
Confidence 3447888999999999999999999999988999999999963
No 289
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.98 E-value=0.0065 Score=45.94 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEeCCCCchHHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~l 52 (276)
++++|..|+||||+|..|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4788999999999999999988
No 290
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.95 E-value=0.013 Score=53.75 Aligned_cols=61 Identities=21% Similarity=0.193 Sum_probs=45.0
Q ss_pred hhhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCC--CcEEEEecCCCCC
Q 023886 9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVR--PSVLIISTDPAHN 69 (276)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G--~kVlliD~D~~~~ 69 (276)
.++++.+...+...+.+.....++++|.+|+|||+++..++..+.+.+ ..+..|++....+
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 455566666666655544455578999999999999999999998764 6778888765433
No 291
>PRK07004 replicative DNA helicase; Provisional
Probab=95.94 E-value=0.01 Score=55.69 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=36.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAH 68 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~ 68 (276)
+..++++.+.+|+|||+++.++|...|. .|++|+++.+....
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~ 254 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPG 254 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 3567889999999999999999999884 69999999999653
No 292
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.93 E-value=0.0085 Score=49.74 Aligned_cols=35 Identities=31% Similarity=0.428 Sum_probs=28.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.+++++.|.+|+||||+|..||..+ |..+ ++..|.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~~~D~ 37 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR---AIDI-VLSGDY 37 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCeE-EehhHH
Confidence 4578999999999999999998874 5544 677773
No 293
>PRK12740 elongation factor G; Reviewed
Probab=95.91 E-value=0.04 Score=54.34 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=15.0
Q ss_pred CCCCchHHHHHHHHHHH
Q 023886 35 GKGGVGKTTCSSILSIL 51 (276)
Q Consensus 35 ~kGGvGKTT~a~~lA~~ 51 (276)
|.+|+||||++-.|...
T Consensus 2 g~~~~GKTTL~~~Ll~~ 18 (668)
T PRK12740 2 GHSGAGKTTLTEAILFY 18 (668)
T ss_pred CCCCCcHHHHHHHHHHh
Confidence 67899999999998766
No 294
>PRK05636 replicative DNA helicase; Provisional
Probab=95.90 E-value=0.012 Score=55.83 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=39.2
Q ss_pred hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC
Q 023886 19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (276)
Q Consensus 19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~ 67 (276)
|..+..+ .+..++++.+.+|+|||+++.++|...| +.|++|+++.+...
T Consensus 255 LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs 305 (505)
T PRK05636 255 LDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS 305 (505)
T ss_pred HhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCC
Confidence 4444432 3457788999999999999999999888 46899999999864
No 295
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.90 E-value=0.013 Score=44.51 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=26.0
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.|..|+||||++..+|..+ |..++-+|+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhc---cccccccccc
Confidence 3577999999999999999887 5666666665
No 296
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.90 E-value=0.016 Score=51.08 Aligned_cols=41 Identities=29% Similarity=0.405 Sum_probs=31.3
Q ss_pred hhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 22 ~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+...+.+.++++.|..|+||||+|..||..| |..+ +|..|.
T Consensus 86 i~~~~~p~iIlI~G~sgsGKStlA~~La~~l---~~~~-vi~~D~ 126 (301)
T PRK04220 86 IRKSKEPIIILIGGASGVGTSTIAFELASRL---GIRS-VIGTDS 126 (301)
T ss_pred HhcCCCCEEEEEECCCCCCHHHHHHHHHHHh---CCCE-EEechH
Confidence 3333455678899999999999999999887 5553 577884
No 297
>PLN02796 D-glycerate 3-kinase
Probab=95.88 E-value=0.013 Score=52.53 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=34.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.+.++.++|..|+||||++..|+..+...|.++..|..|-
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 4566788899999999999999999988888898888883
No 298
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.84 E-value=0.018 Score=49.95 Aligned_cols=44 Identities=27% Similarity=0.319 Sum_probs=36.1
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~ 77 (276)
++..|..|+|||++|..+|.. .|.++..+.+++....++++|..
T Consensus 24 vLL~G~~GtGKT~lA~~la~~---lg~~~~~i~~~~~~~~~dllg~~ 67 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVARK---RDRPVMLINGDAELTTSDLVGSY 67 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHHH---hCCCEEEEeCCccCCHHHHhhhh
Confidence 456799999999999999873 48999999999877767777643
No 299
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.81 E-value=0.011 Score=51.56 Aligned_cols=46 Identities=26% Similarity=0.316 Sum_probs=35.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCC-C-cEEEEecCCCCChh
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVR-P-SVLIISTDPAHNLS 71 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G-~-kVlliD~D~~~~l~ 71 (276)
.+.+++.+.|-||+||||+|..++......+ + .|.-+++....+..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~ 64 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLE 64 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccc
Confidence 6788999999999999999999998755332 2 57778887665543
No 300
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.80 E-value=0.012 Score=47.61 Aligned_cols=30 Identities=33% Similarity=0.328 Sum_probs=25.5
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVL 60 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVl 60 (276)
+|+.|++|+||||+...+...+.+.|.+|.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~ 31 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVG 31 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccc
Confidence 577899999999999999999988877764
No 301
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.78 E-value=0.0096 Score=48.98 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=27.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
|+.++|..|+||||+|..|+..+. .+.+|..|-
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Dd 33 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDD 33 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----CCeEEcccc
Confidence 356789999999999999998762 477888883
No 302
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.77 E-value=0.0096 Score=52.51 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=28.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++++++.|.+|+||||+|..|+..+. ....+|.|.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~ 36 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDD 36 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccH
Confidence 46788999999999999999988762 467788874
No 303
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.68 E-value=0.018 Score=55.53 Aligned_cols=39 Identities=31% Similarity=0.343 Sum_probs=34.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~ 66 (276)
..++++.|-.|+||||+|..||..|.. .|.++.++|.|.
T Consensus 392 g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~ 431 (568)
T PRK05537 392 GFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDV 431 (568)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcH
Confidence 456777899999999999999999987 788899999994
No 304
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=95.66 E-value=0.11 Score=41.82 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=23.7
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
+.+.|..|+||||+.-.|.......++.....|
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~ 34 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEE 34 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceec
Confidence 345589999999999999876554455444444
No 305
>PRK05380 pyrG CTP synthetase; Validated
Probab=95.61 E-value=0.29 Score=46.46 Aligned_cols=44 Identities=32% Similarity=0.457 Sum_probs=37.3
Q ss_pred EEEE-EeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhH
Q 023886 29 KWVF-VGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72 (276)
Q Consensus 29 ~i~v-~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~ 72 (276)
+.+| +.| -.|.||=.+|+.++..|-.+|+||-.+=+||.-|..-
T Consensus 3 k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~ 48 (533)
T PRK05380 3 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDP 48 (533)
T ss_pred eEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCC
Confidence 4454 444 8899999999999999999999999999999877543
No 306
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=95.58 E-value=0.018 Score=51.46 Aligned_cols=38 Identities=24% Similarity=0.101 Sum_probs=31.5
Q ss_pred EEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 29 ~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.|.|-|- .||+|||+++..|+..|.++|+||.+|.=.-
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGY 89 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGY 89 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 3444333 8999999999999999999999999997554
No 307
>PRK06761 hypothetical protein; Provisional
Probab=95.57 E-value=0.014 Score=51.08 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=33.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEE-EecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLI-ISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVll-iD~D~ 66 (276)
.+++++.|.+|+||||++..|+..+...|.+|-. .+.|+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~ 42 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL 42 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence 3568899999999999999999999888988875 56665
No 308
>PRK00093 GTP-binding protein Der; Reviewed
Probab=95.54 E-value=0.15 Score=47.40 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=16.0
Q ss_pred EEEEEeCCCCchHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA 49 (276)
+|+++ |++||||||+...|.
T Consensus 3 ~I~iv-G~~~vGKStL~n~l~ 22 (435)
T PRK00093 3 VVAIV-GRPNVGKSTLFNRLT 22 (435)
T ss_pred EEEEE-CCCCCCHHHHHHHHh
Confidence 44444 999999999998874
No 309
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.54 E-value=0.019 Score=51.20 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=35.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
+++++++ |.--+||||++.-|-.+..++|+|.+.+|+|++.+
T Consensus 103 GPrv~vV-Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~ 144 (415)
T KOG2749|consen 103 GPRVMVV-GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQG 144 (415)
T ss_pred CCEEEEE-CCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCC
Confidence 4566555 56789999999999999999999999999999544
No 310
>PRK08118 topology modulation protein; Reviewed
Probab=95.52 E-value=0.013 Score=47.20 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=18.5
Q ss_pred EEEeCCCCchHHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+++.|.+|+||||+|..|+..+
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5666899999999999988664
No 311
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=95.48 E-value=0.028 Score=47.52 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=35.5
Q ss_pred chhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCC
Q 023886 18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDP 66 (276)
Q Consensus 18 ~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~ 66 (276)
++..++.++ +.+-|.-|.|||+++..|...+. +.|.+|+++|..-
T Consensus 17 ~~~~l~~~H----~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 17 DLNKLFNRH----IAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred eHHHhccce----EEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 344455433 44558999999999999999999 8899999998763
No 312
>PRK07933 thymidylate kinase; Validated
Probab=95.48 E-value=0.024 Score=47.65 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=32.4
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++-|--|+||||.+..|+..|...|++|.++..-
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 467888999999999999999999999999988653
No 313
>PRK04040 adenylate kinase; Provisional
Probab=95.47 E-value=0.02 Score=47.13 Aligned_cols=31 Identities=35% Similarity=0.296 Sum_probs=25.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcE
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSV 59 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kV 59 (276)
++++++.|.+|+||||++..|+..+. .|.++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeE
Confidence 46788899999999999999998885 24444
No 314
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=95.42 E-value=0.16 Score=47.20 Aligned_cols=41 Identities=29% Similarity=0.359 Sum_probs=35.5
Q ss_pred EEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886 31 VFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (276)
Q Consensus 31 ~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~ 71 (276)
.++.| -.|.||-.+|+.||..|..+|++|-++=+||.-|..
T Consensus 5 fVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvD 46 (533)
T COG0504 5 FVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVD 46 (533)
T ss_pred EEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceecC
Confidence 34444 789999999999999999999999999999987654
No 315
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.41 E-value=0.017 Score=53.15 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=26.8
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVL 60 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVl 60 (276)
++++|.+|.||||+|++||..++.+|+=|=
T Consensus 266 ILIAG~PGaGKsTFaqAlAefy~~~GkiVK 295 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAEFYASQGKIVK 295 (604)
T ss_pred eEEecCCCCChhHHHHHHHHHHHhcCcEEe
Confidence 677899999999999999999999998433
No 316
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=95.40 E-value=0.12 Score=42.12 Aligned_cols=30 Identities=23% Similarity=0.118 Sum_probs=26.3
Q ss_pred CCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 36 KGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 36 kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
-.|=||||-|..+|....-.|+||++|=.=
T Consensus 36 G~GKGKTTAAlG~alRa~GhG~rv~vvQFi 65 (198)
T COG2109 36 GNGKGKTTAALGLALRALGHGLRVGVVQFI 65 (198)
T ss_pred cCCCChhHHHHHHHHHHhcCCCEEEEEEEe
Confidence 457899999999999999999999998654
No 317
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=95.38 E-value=0.097 Score=42.54 Aligned_cols=37 Identities=24% Similarity=0.190 Sum_probs=31.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+.+++|=-|+||||+-.++.. ....|.|+.+|-.|..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g 38 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFG 38 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTT
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccc
Confidence 568889999999999999998 6678999999999876
No 318
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.37 E-value=0.015 Score=46.30 Aligned_cols=32 Identities=34% Similarity=0.410 Sum_probs=25.6
Q ss_pred EEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 32 v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
++.|..|+||||+|..|+..+ | ..++|.|.-.
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l---~--~~~v~~D~~~ 33 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL---G--AKFIEGDDLH 33 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc---C--CeEEeCcccc
Confidence 567999999999999999876 3 4567888643
No 319
>COG2403 Predicted GTPase [General function prediction only]
Probab=95.36 E-value=0.03 Score=50.25 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=41.5
Q ss_pred hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
..|..+.++ ..++.-..+.|.++...-|+|||+++.-+|..|.++|+||++|-.
T Consensus 110 A~f~~~gP~-et~~~~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 110 ADFKELGPK-ETMLKLEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred ceeEEeCcc-HHhhhhcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 344444443 333334456778888888999999999999999999999999977
No 320
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=95.36 E-value=0.16 Score=43.70 Aligned_cols=42 Identities=29% Similarity=0.420 Sum_probs=33.2
Q ss_pred EEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhH
Q 023886 31 VFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD 72 (276)
Q Consensus 31 ~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~ 72 (276)
.++.| -.|.||=.+|+.+|..|..+|+||.++=+||.-|..-
T Consensus 5 fVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~ 47 (276)
T PF06418_consen 5 FVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDP 47 (276)
T ss_dssp EEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSC
T ss_pred EEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCC
Confidence 35555 8899999999999999999999999999999877543
No 321
>PTZ00301 uridine kinase; Provisional
Probab=95.36 E-value=0.036 Score=46.49 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=31.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHh-CCC-cEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAE-VRP-SVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~-kVlliD~D~ 66 (276)
..|+-++|-+|+||||+|..|+..+.+ .|- .|.++-.|-
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~ 43 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDF 43 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence 356788999999999999999988854 353 566888884
No 322
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.32 E-value=0.045 Score=44.32 Aligned_cols=31 Identities=32% Similarity=0.256 Sum_probs=23.0
Q ss_pred CCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 37 GGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 37 GGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.|=||||-|..+|...+-.|+||+++=.=-.
T Consensus 12 ~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg 42 (172)
T PF02572_consen 12 DGKGKTTAALGLALRAAGHGMRVLIVQFLKG 42 (172)
T ss_dssp SSS-HHHHHHHHHHHHHCTT--EEEEESS--
T ss_pred CCCCchHHHHHHHHHHHhCCCEEEEEEEecC
Confidence 4668999999999999999999999976544
No 323
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.32 E-value=0.02 Score=46.01 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=20.6
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVL 60 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVl 60 (276)
+.+.|.+||||||+|-.|+ +.|+++.
T Consensus 3 I~ITGTPGvGKTT~~~~L~----~lg~~~i 28 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR----ELGYKVI 28 (180)
T ss_pred EEEeCCCCCchHHHHHHHH----HhCCcee
Confidence 5667999999999998887 4566554
No 324
>PRK15494 era GTPase Era; Provisional
Probab=95.29 E-value=0.17 Score=45.63 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.3
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+++-|.+||||||+.-.|.
T Consensus 55 V~ivG~~nvGKSTLin~l~ 73 (339)
T PRK15494 55 VCIIGRPNSGKSTLLNRII 73 (339)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 3555899999999987774
No 325
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.27 E-value=0.03 Score=50.74 Aligned_cols=59 Identities=25% Similarity=0.326 Sum_probs=42.5
Q ss_pred hhhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC----C--CcEEEEecCCC
Q 023886 9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV----R--PSVLIISTDPA 67 (276)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~----G--~kVlliD~D~~ 67 (276)
.++++.+...+...+.+.....++++|.+|+|||+++..++..+.+. | .+++.|++...
T Consensus 21 e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 21 DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 45566666666665555445568899999999999999999988643 1 35777777543
No 326
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.25 E-value=0.028 Score=47.06 Aligned_cols=38 Identities=34% Similarity=0.369 Sum_probs=32.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
..|+-++|-+|+||||+|..|...|... +|.+|-.|..
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~Y 45 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDY 45 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeecccc
Confidence 3566788999999999999999888755 8999999954
No 327
>PRK13947 shikimate kinase; Provisional
Probab=95.24 E-value=0.028 Score=45.12 Aligned_cols=31 Identities=32% Similarity=0.359 Sum_probs=25.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++.|-+|+||||++..||..| |.+ ++|.|.
T Consensus 4 I~l~G~~GsGKst~a~~La~~l---g~~--~id~d~ 34 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTL---SFG--FIDTDK 34 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCC--EEECch
Confidence 6778999999999999998776 554 477774
No 328
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.24 E-value=0.027 Score=55.05 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=32.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
.++++.|.+|+||||+.+.+...+.+.|++||+..
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a 208 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTA 208 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 46789999999999999999999999999999986
No 329
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.24 E-value=0.017 Score=44.91 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=24.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
|++++|..|+||||+|..||..+ |. -++|.|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~---~~--~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL---GL--PYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CC--ceeccc
Confidence 46889999999999999999765 43 356666
No 330
>PRK13946 shikimate kinase; Provisional
Probab=95.19 E-value=0.025 Score=46.31 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=27.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+.+++.|-.|+||||++..||..| |.. .+|.|.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L---g~~--~id~D~ 43 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML---GLP--FLDADT 43 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCC--eECcCH
Confidence 457888999999999999999887 555 578883
No 331
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.16 E-value=0.17 Score=41.99 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=30.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
+.+.|..|+||||+...+...+... .++.++..|....
T Consensus 4 i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~~~ 41 (199)
T TIGR00101 4 IGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDIYTQ 41 (199)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcCCh
Confidence 4566999999999999999877654 5688888887543
No 332
>PLN02924 thymidylate kinase
Probab=95.15 E-value=0.041 Score=46.51 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=32.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
+..++++=|-.|+||||.+..|+..|...|++|.++.
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ 51 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWR 51 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeee
Confidence 3566788899999999999999999999999987664
No 333
>PRK03839 putative kinase; Provisional
Probab=95.14 E-value=0.026 Score=45.85 Aligned_cols=30 Identities=33% Similarity=0.410 Sum_probs=23.6
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.|-+|+||||++..||..+ |. -.+|+|
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~---~~--~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL---GY--EYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CC--cEEehh
Confidence 6777999999999999888776 33 446766
No 334
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.12 E-value=0.043 Score=45.26 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=29.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII 62 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli 62 (276)
+++++-|--|+||||++..|+..+...|+.|...
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 5678889999999999999999999889776654
No 335
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.10 E-value=0.022 Score=42.26 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.5
Q ss_pred EEeCCCCchHHHHHHHHHHHHHhC
Q 023886 32 FVGGKGGVGKTTCSSILSILLAEV 55 (276)
Q Consensus 32 v~s~kGGvGKTT~a~~lA~~la~~ 55 (276)
++.|.+|+|||++|..||..+.+.
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 577999999999999999999865
No 336
>PLN02327 CTP synthase
Probab=95.10 E-value=0.61 Score=44.49 Aligned_cols=43 Identities=30% Similarity=0.447 Sum_probs=36.7
Q ss_pred EEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHH
Q 023886 31 VFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA 73 (276)
Q Consensus 31 ~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~ 73 (276)
.++.| -.|.||=.+|+.++..|..+|++|-.+=.||.-|..-.
T Consensus 5 fvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~G 48 (557)
T PLN02327 5 LVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAG 48 (557)
T ss_pred EEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCCC
Confidence 34444 78999999999999999999999999999998775433
No 337
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.08 E-value=0.023 Score=46.03 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
++++++|-+|+||||+|..|+..+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 578999999999999999998765
No 338
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=95.08 E-value=0.2 Score=43.60 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=19.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
|-+.+.|.+|+||||++-.|....
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~ 26 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFG 26 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhc
Confidence 346677999999999999887653
No 339
>PRK00049 elongation factor Tu; Reviewed
Probab=95.07 E-value=0.31 Score=44.91 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=20.9
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVR 56 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G 56 (276)
+.+.|..+.||||++-.|.....+.|
T Consensus 15 i~iiGhvd~GKSTL~~~L~~~~~~~g 40 (396)
T PRK00049 15 VGTIGHVDHGKTTLTAAITKVLAKKG 40 (396)
T ss_pred EEEEeECCCCHHHHHHHHHHhhhhcc
Confidence 46668999999999999987665544
No 340
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.05 E-value=0.025 Score=48.24 Aligned_cols=36 Identities=36% Similarity=0.497 Sum_probs=27.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
..+.|+++.|..||||||+|.-+|..|. -+ -+|..|
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLg---I~-~visTD 122 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLG---IR-SVISTD 122 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcC---Cc-eeecch
Confidence 3478889999999999999999987654 32 246666
No 341
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=94.97 E-value=0.67 Score=44.05 Aligned_cols=43 Identities=28% Similarity=0.388 Sum_probs=36.7
Q ss_pred EEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHH
Q 023886 31 VFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA 73 (276)
Q Consensus 31 ~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~ 73 (276)
.++.| -.|.||=.+|+.++..|..+|+||-.+=.||.-|..-.
T Consensus 5 ~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~G 48 (525)
T TIGR00337 5 FVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPG 48 (525)
T ss_pred EEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCC
Confidence 34444 78999999999999999999999999999998775433
No 342
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=94.97 E-value=0.042 Score=48.89 Aligned_cols=38 Identities=26% Similarity=0.209 Sum_probs=32.2
Q ss_pred eEEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+.|+|-|- -||.|||.++.-||..|.++|++|.+|.=.
T Consensus 29 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 67 (311)
T TIGR00682 29 PVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRG 67 (311)
T ss_pred CEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCC
Confidence 44555555 699999999999999999999999999754
No 343
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=94.96 E-value=0.074 Score=43.88 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhccCCCcEEEEcCCCchhH
Q 023886 126 EAMSFAEMLKLVQTMDYSCIVFDTAPTGHT 155 (276)
Q Consensus 126 ~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~ 155 (276)
....+.+++..+-. .|.|||+|.|=-+.+
T Consensus 92 r~em~ke~~~~~l~-G~r~ivlDiPLLFE~ 120 (225)
T KOG3220|consen 92 RKEMFKEILKLLLR-GYRVIVLDIPLLFEA 120 (225)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEechHHHHH
Confidence 44577888888886 899999999975554
No 344
>PRK07261 topology modulation protein; Provisional
Probab=94.91 E-value=0.033 Score=45.02 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=18.2
Q ss_pred EEEeCCCCchHHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+++.|.+|+||||+|..|+..+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 4566899999999999987654
No 345
>PRK06851 hypothetical protein; Provisional
Probab=94.90 E-value=0.061 Score=48.87 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=35.6
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE--ecCC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII--STDP 66 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli--D~D~ 66 (276)
....++.+++|.+|+||||+...++..+.+.|++|-.+ ..||
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN 70 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 34578899999999999999999999999999987766 4553
No 346
>PLN02200 adenylate kinase family protein
Probab=94.90 E-value=0.031 Score=47.72 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
.+.++++.|.+|+||||+|..||..+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998755
No 347
>PRK07773 replicative DNA helicase; Validated
Probab=94.88 E-value=0.037 Score=56.28 Aligned_cols=40 Identities=25% Similarity=0.197 Sum_probs=35.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~ 67 (276)
..++++.|.+|+|||++|.|+|...|.. |++|+++.++..
T Consensus 217 G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms 257 (886)
T PRK07773 217 GQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMS 257 (886)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4678899999999999999999999864 899999999964
No 348
>PLN02348 phosphoribulokinase
Probab=94.86 E-value=0.057 Score=49.32 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=34.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCC---------------CcEEEEecCCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVR---------------PSVLIISTDPAH 68 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G---------------~kVlliD~D~~~ 68 (276)
+.+.|+-+.|-.|+||||+|..|+..|...+ ..|.+|-+|-.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 3456678999999999999999999997542 478899998554
No 349
>PLN03127 Elongation factor Tu; Provisional
Probab=94.78 E-value=0.54 Score=44.07 Aligned_cols=33 Identities=27% Similarity=0.154 Sum_probs=23.7
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP 57 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~ 57 (276)
.++..-+.+.|.-+.||||++-.|....++.|+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~ 90 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGK 90 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhc
Confidence 344444677799999999999999765554443
No 350
>PRK13948 shikimate kinase; Provisional
Probab=94.76 E-value=0.048 Score=44.68 Aligned_cols=33 Identities=36% Similarity=0.460 Sum_probs=26.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
...++..|-.|+||||++..||..| |.. +||+|
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~l---g~~--~iD~D 42 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRAL---MLH--FIDTD 42 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc---CCC--EEECC
Confidence 4557788999999999999998776 554 45999
No 351
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=94.75 E-value=0.046 Score=49.19 Aligned_cols=39 Identities=23% Similarity=0.092 Sum_probs=32.0
Q ss_pred EEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 29 ~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.|+|-|- -||+|||-++..||..|.++|++|.+|.=.-.
T Consensus 58 VIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg 97 (338)
T PRK01906 58 VVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYG 97 (338)
T ss_pred EEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 3334443 99999999999999999999999999975543
No 352
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.74 E-value=0.038 Score=44.36 Aligned_cols=32 Identities=34% Similarity=0.401 Sum_probs=25.4
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.+++.|-.|+||||++..||..+ |. .++|.|.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l---g~--~~~d~D~ 35 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL---GY--RFVDTDQ 35 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CC--CEEEccH
Confidence 35667999999999999999776 44 4578883
No 353
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.71 E-value=0.039 Score=51.61 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=33.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.-+++.|..|+|||+++..+|..+.+.|.+|+.++++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4467789999999999999999999899999999876
No 354
>PRK13973 thymidylate kinase; Provisional
Probab=94.70 E-value=0.063 Score=45.00 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=30.5
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII 62 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli 62 (276)
+++++=|--|+||||.+..|+..|...|++|...
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4567789999999999999999999999999766
No 355
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=94.65 E-value=0.062 Score=50.83 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=31.4
Q ss_pred cCCceEEE-EEeC---CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886 24 EQDSLKWV-FVGG---KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (276)
Q Consensus 24 ~~~~~~i~-v~s~---kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~ 77 (276)
+++.-+.+ |++- +-|+||||++..|+.+|++.|+++.+.= .|+++.-.||.+
T Consensus 50 ~~~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~~l--RePSlGP~fG~K 105 (557)
T PF01268_consen 50 DKPDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIAAL--REPSLGPVFGIK 105 (557)
T ss_dssp TS---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEEEE------CHHHHCST
T ss_pred ccCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEEEE--ecCCCCCccCcc
Confidence 34344444 4433 7799999999999999999999987643 455666667665
No 356
>PRK12338 hypothetical protein; Provisional
Probab=94.63 E-value=0.034 Score=49.49 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=27.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+.+++++|.+|+||||+|..||..+ |.+ .+++.|.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l---~~~-~~~~tD~ 38 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL---NIK-HLIETDF 38 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC---CCe-EEccChH
Confidence 4678999999999999999999876 443 3567773
No 357
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=94.60 E-value=0.042 Score=54.60 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=28.3
Q ss_pred eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY 265 (276)
Q Consensus 225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~ 265 (276)
+.+++|.-.......++..++..+.+.++++. +++|++-.
T Consensus 111 D~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 150 (720)
T TIGR00490 111 DGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDR 150 (720)
T ss_pred CEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 55666665544445567778888878888875 99998854
No 358
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.60 E-value=0.057 Score=40.65 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=27.7
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEe
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEV--RPSVLIIS 63 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD 63 (276)
+++.+..|+|||+++..++..+... +++++++-
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred EEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 5778999999999999999999874 46777774
No 359
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.56 E-value=0.029 Score=45.52 Aligned_cols=31 Identities=29% Similarity=0.255 Sum_probs=24.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++.|.+|+||||+|..||..+ | +..|+.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~---~--~~~is~~ 31 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF---G--FTHLSAG 31 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc---C--CeEEECC
Confidence 36788999999999999998765 3 4556654
No 360
>PRK13808 adenylate kinase; Provisional
Probab=94.51 E-value=1.1 Score=40.30 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=18.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+++.|.+|+||||++..||..+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4557889999999999998654
No 361
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.47 E-value=0.057 Score=43.65 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=28.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+++.|..|+|||++|..++.. .|.++++++....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~ 35 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEA 35 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCc
Confidence 678899999999999999865 6789999966543
No 362
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.46 E-value=0.043 Score=44.59 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
..++++.|.+|+||||++..||..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567788999999999999999765
No 363
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.46 E-value=0.038 Score=50.35 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=31.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
.....+|++|.||+|||++...+-..+...|++|++.-
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a 57 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTA 57 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEec
Confidence 33456799999999999999999999988888887653
No 364
>PRK14528 adenylate kinase; Provisional
Probab=94.43 E-value=0.055 Score=44.37 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=19.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHH
Q 023886 30 WVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
.+++.|.+|+||||+|..||..+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46778999999999999988665
No 365
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.42 E-value=0.058 Score=44.97 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=26.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCC--cEEEE
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRP--SVLII 62 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~--kVlli 62 (276)
..++++.|+.|+|||++|...|..+...|. |+.++
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 447899999999999999999998887664 55554
No 366
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.41 E-value=0.036 Score=43.56 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=17.1
Q ss_pred EEEeCCCCchHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~ 50 (276)
+++.|.+|+||||++..+|.
T Consensus 10 ILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred EEEeCCCCCCchhHHHHHHH
Confidence 45668999999999999984
No 367
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=94.39 E-value=0.17 Score=45.15 Aligned_cols=41 Identities=22% Similarity=0.080 Sum_probs=34.3
Q ss_pred eEEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 28 ~~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
+.|+|-|- -||.|||-++..||..|.++|.|+.++.=.-.+
T Consensus 48 PVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 48 PVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred CEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 34445444 899999999999999999999999999877555
No 368
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=94.36 E-value=0.06 Score=48.24 Aligned_cols=39 Identities=26% Similarity=0.095 Sum_probs=32.3
Q ss_pred eEEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+.|.|-|- -||+|||-++..|+..|.++|++|.+|.=.-
T Consensus 36 pVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 36 PVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred cEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 34445444 8999999999999999999999999997653
No 369
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.36 E-value=0.052 Score=50.11 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=32.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D 65 (276)
..+++.|..|+|||+++..+|..+.+. |.+|+.++++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 457889999999999999999999876 7899999875
No 370
>PLN03025 replication factor C subunit; Provisional
Probab=94.32 E-value=0.05 Score=48.60 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=32.8
Q ss_pred hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++.+.......-+++.|.+|+||||+|..+|..+-..+++..+++.++
T Consensus 25 L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 25 LQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 444444433333567999999999999999999876555444455543
No 371
>PRK01184 hypothetical protein; Provisional
Probab=94.30 E-value=0.056 Score=43.97 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=22.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++++.|.+|+||||++. + +.+.|..+ +|+|
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~---~~~~g~~~--i~~~ 32 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-I---AREMGIPV--VVMG 32 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-H---HHHcCCcE--EEhh
Confidence 3568889999999999864 3 34567655 5553
No 372
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.28 E-value=0.095 Score=43.42 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=27.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEec
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIST 64 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~ 64 (276)
+++++|..|+||||+...++..+... +.+++.++-
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~ 38 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED 38 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC
Confidence 46788999999999999998888754 445555543
No 373
>PLN03126 Elongation factor Tu; Provisional
Probab=94.24 E-value=0.62 Score=44.08 Aligned_cols=29 Identities=28% Similarity=0.219 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHH
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
.++..-+.+.|..++||||++-.|...+.
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~ 106 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALA 106 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 44455567889999999999999986654
No 374
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.22 E-value=0.094 Score=42.47 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=33.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~ 67 (276)
...+++.|..|||||.+|..||..+- ....+.+.+|+-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence 44567889999999999999999998 67778888898753
No 375
>CHL00071 tufA elongation factor Tu
Probab=94.22 E-value=0.95 Score=41.91 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=19.6
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
.-+.+.|..++||||+.-.|...+.
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~ 37 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLA 37 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3356779999999999998876543
No 376
>PRK10536 hypothetical protein; Provisional
Probab=94.21 E-value=0.11 Score=44.71 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=34.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCCCChhHHhcccc
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPAHNLSDAFQQRF 78 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~~~l~~~l~~~~ 78 (276)
.++++.|..|+|||++|..+|...- ...++.++| ..|.-.....+|.-+
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI-~RP~v~~ge~LGfLP 124 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV-TRPVLQADEDLGFLP 124 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE-eCCCCCchhhhCcCC
Confidence 4789999999999999999999644 434555555 355555555555443
No 377
>PRK14527 adenylate kinase; Provisional
Probab=94.20 E-value=0.054 Score=44.51 Aligned_cols=26 Identities=35% Similarity=0.271 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
...++++.|.+|+||||+|..||..+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678888999999999999998766
No 378
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=94.18 E-value=0.056 Score=48.01 Aligned_cols=34 Identities=32% Similarity=0.288 Sum_probs=28.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.++++++|..|+|||++|..||..+ .+.+|.+|.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~-----~~~iis~Ds 37 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRL-----NGEIISADS 37 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhC-----CCcEEeccc
Confidence 4678999999999999999999765 355788884
No 379
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.10 E-value=0.046 Score=49.39 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=26.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAE 54 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~ 54 (276)
..++++...|.+|+||||+|..||..|..
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34688899999999999999999999976
No 380
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=94.01 E-value=0.08 Score=43.81 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=24.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.+.|..|+||||++..|+..+ |..| +|+|
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~--i~~D 33 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GIPI--LDAD 33 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeE--eeCc
Confidence 357788999999999998877532 6554 5888
No 381
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.00 E-value=0.064 Score=42.01 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=24.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.|.+|+||||+|..||..+ |.. .+|.|
T Consensus 2 i~l~G~~GsGKstla~~la~~l---~~~--~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL---GLP--FVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCC--EEEch
Confidence 5677999999999999999877 544 45777
No 382
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.97 E-value=0.074 Score=46.75 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=28.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCC----cEEEEec
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRP----SVLIIST 64 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~----kVlliD~ 64 (276)
-+++.|.+|+||||+|..+|..+.+.|. .+..++.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 3677799999999999999999988765 3555554
No 383
>CHL00181 cbbX CbbX; Provisional
Probab=93.97 E-value=0.075 Score=46.80 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=27.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCC----cEEEEec
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRP----SVLIIST 64 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~----kVlliD~ 64 (276)
+++.|.+|+||||+|..+|..+...|. .++-++.
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~ 99 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR 99 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH
Confidence 567799999999999999999887665 3555553
No 384
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=93.94 E-value=0.44 Score=45.64 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSIL 51 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~ 51 (276)
.+-+.+-|.+|+||||++-.|...
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~ 34 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLY 34 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHh
Confidence 344566689999999999988653
No 385
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.93 E-value=0.033 Score=47.15 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=34.9
Q ss_pred hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++-+..+.++-=++++|.+|+||||....||..|--..+|=.+++++
T Consensus 39 l~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 39 LSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 34444455555678899999999999999999987655665555555
No 386
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.93 E-value=0.098 Score=46.71 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=37.0
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~ 77 (276)
+++.|.+|+||||++..+|..+ |.+..-|.+++.-...+++|..
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~~DliG~~ 110 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSRIDLVGKD 110 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCChhhcCCCc
Confidence 6678999999999999999877 5778888999887777788754
No 387
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.90 E-value=0.061 Score=48.89 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=23.6
Q ss_pred hhhhhcCCceEEEEEeCCCCchHHHHHHHHHH
Q 023886 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~ 50 (276)
|+++++.....=+++.|.+|+||||+|.-+|.
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHH
Confidence 34444444445567889999999999999984
No 388
>PRK12735 elongation factor Tu; Reviewed
Probab=93.90 E-value=1.4 Score=40.71 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=19.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHh
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAE 54 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~ 54 (276)
+.+-|..++||||++-.|-.....
T Consensus 15 i~iiGhvd~GKSTL~~~L~~~~~~ 38 (396)
T PRK12735 15 VGTIGHVDHGKTTLTAAITKVLAK 38 (396)
T ss_pred EEEECcCCCCHHHHHHHHHHhhhh
Confidence 567799999999999998765443
No 389
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.86 E-value=0.13 Score=52.19 Aligned_cols=51 Identities=27% Similarity=0.285 Sum_probs=37.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC---CCChhHHhcccc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP---AHNLSDAFQQRF 78 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~---~~~l~~~l~~~~ 78 (276)
.-++++.|..|||||.+|..||..|-..+..+.-+|+.. .++.+.++|..+
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~ 649 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPP 649 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCC
Confidence 345678899999999999999999876666788888653 344555555443
No 390
>PRK00625 shikimate kinase; Provisional
Probab=93.83 E-value=0.065 Score=43.49 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=24.4
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.|-+|+||||++..||..+ |.+ .+|+|
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l---~~~--~id~D 32 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFL---SLP--FFDTD 32 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCC--EEEhh
Confidence 6778999999999999998776 433 47877
No 391
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.82 E-value=0.066 Score=47.81 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=33.0
Q ss_pred hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCC--CcEEEEecC
Q 023886 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVR--PSVLIISTD 65 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G--~kVlliD~D 65 (276)
+.+.+..+....+++.|..|+||||+|..+|..+...+ .++..+++.
T Consensus 27 L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 27 LSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred HHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 44444444333467899999999999999999887543 356666653
No 392
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.82 E-value=0.075 Score=49.84 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=33.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D 65 (276)
.-+++.|..|+|||+++..+|..+.+. |.+|+.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 457889999999999999999999887 7899999886
No 393
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.81 E-value=0.072 Score=42.45 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=16.5
Q ss_pred EEEeCCCCchHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSIL 51 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~ 51 (276)
+++.|-.|+||||++..|+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 456789999999999999976
No 394
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=93.79 E-value=0.085 Score=49.89 Aligned_cols=40 Identities=18% Similarity=0.013 Sum_probs=30.6
Q ss_pred CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (276)
Q Consensus 36 kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~ 77 (276)
.-|+||||++..|+.+|.+.|+|+.+.==. +++.-.||.+
T Consensus 75 P~GEGKtTttIGL~~aL~~lgk~~~~~lRe--PSlGP~FGiK 114 (587)
T PRK13507 75 PLGEGKSTTTMGLVQGLGKRGKKVSGAIRQ--PSGGPTMNIK 114 (587)
T ss_pred CCCCCccchhhhHHHHHHhhcCceEEEEec--CCcCCcCCcc
Confidence 679999999999999999999998865433 3344444443
No 395
>PRK12739 elongation factor G; Reviewed
Probab=93.77 E-value=0.44 Score=47.24 Aligned_cols=41 Identities=12% Similarity=0.030 Sum_probs=28.3
Q ss_pred eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD 266 (276)
Q Consensus 225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~ 266 (276)
+.+++|.-.....-.+++.++..+.+.+++.. +++|++-..
T Consensus 98 D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~ 138 (691)
T PRK12739 98 DGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRI 138 (691)
T ss_pred CeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 44566555544445566788888888888875 889988544
No 396
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.75 E-value=0.07 Score=46.16 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=22.8
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVR 56 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G 56 (276)
+++.|.+|+||||+|..+|..+.+.|
T Consensus 45 vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 56789999999999999999987655
No 397
>PRK09866 hypothetical protein; Provisional
Probab=93.72 E-value=0.44 Score=46.35 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=24.6
Q ss_pred eEEEEEecCCcccHHHHHHHHHHHhhCCC-CcCeEEEccccC
Q 023886 225 TTFVCVCIPEFLSLYETERLVQELTKFEI-DTHNIIINQVLY 265 (276)
Q Consensus 225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~-~~~g~vvN~~~~ 265 (276)
+.+++|.-.....-.+-..+.+.+++.+- ...-+|+|++-.
T Consensus 260 DvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 260 SAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred CEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 55666666654333333567777777664 234678888854
No 398
>PRK08356 hypothetical protein; Provisional
Probab=93.71 E-value=0.11 Score=42.90 Aligned_cols=26 Identities=35% Similarity=0.225 Sum_probs=21.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCc
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPS 58 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~k 58 (276)
.+++++|++|+||||+|-.|+ +.|..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~----~~g~~ 31 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE----EKGFC 31 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH----HCCCc
Confidence 467889999999999998884 35766
No 399
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.70 E-value=0.17 Score=51.22 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=35.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC---CChhHHhcc
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA---HNLSDAFQQ 76 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~---~~l~~~l~~ 76 (276)
..++.|..|||||++|..||..+-..+..+.-+|+... ++.+.++|.
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~ 590 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGS 590 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCC
Confidence 34678999999999999999988766667777887632 445555554
No 400
>PRK12736 elongation factor Tu; Reviewed
Probab=93.69 E-value=0.86 Score=41.97 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=18.1
Q ss_pred EEEeCCCCchHHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+.+.|..+.||||++-.|....
T Consensus 15 i~i~Ghvd~GKSTL~~~L~~~~ 36 (394)
T PRK12736 15 IGTIGHVDHGKTTLTAAITKVL 36 (394)
T ss_pred EEEEccCCCcHHHHHHHHHhhh
Confidence 5667999999999999887443
No 401
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.69 E-value=0.054 Score=41.95 Aligned_cols=42 Identities=26% Similarity=0.165 Sum_probs=29.8
Q ss_pred hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHH
Q 023886 10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
++...+-..+.+.+ ++..+++..|.-|+||||++..++..+.
T Consensus 6 ~~t~~l~~~l~~~l--~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPL--DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhC--CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34444444455444 2345788999999999999999998874
No 402
>PRK13764 ATPase; Provisional
Probab=93.66 E-value=0.098 Score=50.60 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=30.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
.-++++|..|+||||++.+|+..+...|+.|.-++
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiE 292 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTME 292 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEEC
Confidence 44788999999999999999999998888776665
No 403
>PRK14531 adenylate kinase; Provisional
Probab=93.62 E-value=0.08 Score=43.20 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=19.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHHH
Q 023886 30 WVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
.+++.|.+|+||||++..||..+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36778999999999999998875
No 404
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.61 E-value=0.085 Score=49.35 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=31.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D 65 (276)
-+++.|..|+|||.++..+|..+.+. +.+|+.++++
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 47889999999999999999999875 6799999875
No 405
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=93.59 E-value=0.086 Score=42.86 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=24.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++.+.|..|+||||++.-|+. .|.. +||+|
T Consensus 1 ii~itG~~gsGKst~~~~l~~----~g~~--~i~~D 30 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----LGIP--VIDAD 30 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----CCCC--EEecC
Confidence 367789999999999988876 5654 57888
No 406
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.56 E-value=0.28 Score=48.90 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=34.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC---CChhHHhccc
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA---HNLSDAFQQR 77 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~---~~l~~~l~~~ 77 (276)
..++.|..|||||++|..||..+ +.++.-+|+... +..+.++|..
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l---~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEAL---GVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHh---cCCeEEEeCchhhhcccHHHHhcCC
Confidence 45788999999999999999987 677888887642 4456666554
No 407
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=93.56 E-value=0.12 Score=47.90 Aligned_cols=49 Identities=22% Similarity=0.282 Sum_probs=38.1
Q ss_pred hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 023886 19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA 67 (276)
Q Consensus 19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~ 67 (276)
|.++..+ .+..++++.+.+|.|||++|.|+|..+|.. ++.|+++.+...
T Consensus 186 LD~~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~ 236 (435)
T COG0305 186 LDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMS 236 (435)
T ss_pred hHHHhcCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCC
Confidence 4444332 334677888999999999999999999974 667999998854
No 408
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.54 E-value=0.3 Score=46.22 Aligned_cols=36 Identities=36% Similarity=0.593 Sum_probs=26.4
Q ss_pred chhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHH
Q 023886 18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 18 ~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
.+++.+.. +-..-.+++|..|+||||+|..+|.++-
T Consensus 24 ~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 24 ILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred HHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHc
Confidence 34444433 3344568899999999999999998774
No 409
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.53 E-value=0.085 Score=43.09 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=23.4
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.|.+|+||||+|..||..+ | +..++.|
T Consensus 2 I~i~G~pGsGKst~a~~La~~~---~--~~~i~~~ 31 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY---G--LPHISTG 31 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---C--CeEEECc
Confidence 5677899999999999998764 4 4456665
No 410
>PLN02759 Formate--tetrahydrofolate ligase
Probab=93.53 E-value=0.1 Score=49.73 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=30.8
Q ss_pred CCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCCChhHHhccc
Q 023886 36 KGGVGKTTCSSILSILLAE-VRPSVLIISTDPAHNLSDAFQQR 77 (276)
Q Consensus 36 kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~~l~~~l~~~ 77 (276)
.-|+||||++..|+.+|.+ .|+++++.== ++++.-.||.+
T Consensus 81 P~GEGKTTttIGL~~aL~~~lgk~~~~~lR--ePSlGP~FGiK 121 (637)
T PLN02759 81 PLGEGKSTTTIGLCQALGAYLDKKVVTCLR--QPSQGPTFGIK 121 (637)
T ss_pred CCCCCchhHHHHHHHHHHHHhCCeeEEEee--cCCcCCcCCcc
Confidence 7799999999999999997 8999887543 34444445544
No 411
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.52 E-value=0.11 Score=46.12 Aligned_cols=35 Identities=37% Similarity=0.421 Sum_probs=29.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEe
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIIS 63 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD 63 (276)
+-++++|..|+||||+...|...+.+. +.|++.|+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE 169 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE 169 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC
Confidence 456789999999999999999888764 67888886
No 412
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.50 E-value=0.099 Score=45.35 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=32.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
...++++|..|+||||+..++...+-..+.+++.|+-.+.
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 5677888999999999999998888877789998884333
No 413
>PRK00007 elongation factor G; Reviewed
Probab=93.50 E-value=0.51 Score=46.84 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=30.8
Q ss_pred eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD 266 (276)
Q Consensus 225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~ 266 (276)
+.+++|.-...-.-.++...+..+.+.+++.. +++|++-..
T Consensus 100 D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~ 140 (693)
T PRK00007 100 DGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRT 140 (693)
T ss_pred CEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 45666666655556777888999999999885 899988644
No 414
>PRK04195 replication factor C large subunit; Provisional
Probab=93.50 E-value=0.11 Score=49.29 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=30.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
...+.++++|.+|+||||+|..+|..+ |..++-+++...
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~ 75 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQ 75 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEccccc
Confidence 336778999999999999999998765 677777766543
No 415
>PRK13695 putative NTPase; Provisional
Probab=93.48 E-value=0.14 Score=41.21 Aligned_cols=30 Identities=37% Similarity=0.311 Sum_probs=25.2
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVL 60 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVl 60 (276)
+++.|.+|+||||+...++..+...|.++.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 455689999999999999988887788764
No 416
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=93.46 E-value=0.54 Score=45.05 Aligned_cols=39 Identities=13% Similarity=-0.038 Sum_probs=24.6
Q ss_pred eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc
Q 023886 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL 264 (276)
Q Consensus 225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~ 264 (276)
+.+++|.-+..-.-..+..+++.++..++|+ -+++|++-
T Consensus 104 D~aIlVvDa~~gv~~~t~~l~~~~~~~~iPi-iv~iNK~D 142 (526)
T PRK00741 104 DSALMVIDAAKGVEPQTRKLMEVCRLRDTPI-FTFINKLD 142 (526)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHhcCCCE-EEEEECCc
Confidence 5566665554333345667777777778875 57888774
No 417
>PLN02165 adenylate isopentenyltransferase
Probab=93.45 E-value=0.068 Score=47.83 Aligned_cols=38 Identities=29% Similarity=0.282 Sum_probs=29.1
Q ss_pred cCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 24 EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 24 ~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.+....++++.|..|+||||+|..||..+. .-+|++|.
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~-----~eIIsaDs 76 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP-----SEIINSDK 76 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC-----CceecCCh
Confidence 344456788889999999999999987753 24778873
No 418
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=93.40 E-value=0.092 Score=49.00 Aligned_cols=37 Identities=38% Similarity=0.499 Sum_probs=29.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+.+.++++.|-+|+||||+|..||..+. . +.+|..|.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg---~-~~ii~tD~ 289 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLG---I-TRIVSTDA 289 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC---C-cEEeehhH
Confidence 4478889999999999999999987653 3 33677774
No 419
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.37 E-value=0.69 Score=51.05 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=38.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhc
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQ 75 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~ 75 (276)
..++.+++|-+|+||||+...+...+.+.|++|.++- |.+.....|.
T Consensus 445 ~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lA--PTgrAA~~L~ 491 (1960)
T TIGR02760 445 TKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIIT--AGSLSAQELR 491 (1960)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEe--CCHHHHHHHH
Confidence 3578889999999999999999999989999999885 5444555554
No 420
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.34 E-value=0.082 Score=42.74 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=23.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVR 56 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G 56 (276)
+++++.|..|+||||++-.|+..+...|
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~ 29 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDP 29 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCC
Confidence 3578889999999999999988875443
No 421
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.32 E-value=0.085 Score=46.95 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=26.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
...+++.|..|+||||++..||..| |..++ |+|
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~L---g~~~i--d~D 165 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARL---GVPFV--ELN 165 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc---CCCEE--eHH
Confidence 4567777999999999999998766 66655 777
No 422
>PLN02422 dephospho-CoA kinase
Probab=93.27 E-value=0.12 Score=44.06 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=25.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.+.|.-|+||||++..|+ +.|.. ++|+|
T Consensus 2 ~~igltG~igsGKstv~~~l~----~~g~~--~idaD 32 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK----SSGIP--VVDAD 32 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH----HCCCe--EEehh
Confidence 467888999999999998887 35665 58999
No 423
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.26 E-value=0.07 Score=45.03 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=22.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
-=+++.|.+|+||||+|.-+|..+. .+.-.+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~---~~~~~~sg 83 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELG---VNFKITSG 83 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT-----EEEEEC
T ss_pred ceEEEECCCccchhHHHHHHHhccC---CCeEeccc
Confidence 3467889999999999988887654 44444444
No 424
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.23 E-value=0.11 Score=42.11 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=25.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.+++.|..|+||||++..||..+ | .-++|.|.
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l---~--~~~vd~D~ 37 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSDQ 37 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc---C--CcEEECCc
Confidence 36777999999999999999875 3 33678874
No 425
>PRK14532 adenylate kinase; Provisional
Probab=93.22 E-value=0.077 Score=43.33 Aligned_cols=30 Identities=23% Similarity=0.173 Sum_probs=23.0
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.|.+|+||||+|..||..+ | ...|+.|
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~---g--~~~is~~ 32 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER---G--MVQLSTG 32 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---C--CeEEeCc
Confidence 5668999999999999998544 4 3446665
No 426
>PRK02496 adk adenylate kinase; Provisional
Probab=93.20 E-value=0.1 Score=42.43 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.9
Q ss_pred EEEeCCCCchHHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+++.|.+|+||||+|..||..+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5567899999999999998765
No 427
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=93.18 E-value=0.88 Score=42.20 Aligned_cols=40 Identities=15% Similarity=-0.026 Sum_probs=24.7
Q ss_pred eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY 265 (276)
Q Consensus 225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~ 265 (276)
+.+++|..+......+...+.+.+++.+.++ -+|+|++-.
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~~~~pi-ilVvNK~D~ 119 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRKSGKPV-ILVANKIDG 119 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHhCCCE-EEEEECccC
Confidence 4566666554433444456677777777665 568888753
No 428
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=93.17 E-value=0.15 Score=42.59 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=26.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+.++.+.|.-|+||||++..|+.. .|.. ++|+|.
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~---lg~~--vidaD~ 39 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEK---LNLN--VVCADT 39 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH---cCCe--EEeccH
Confidence 455778899999999999887743 3665 589983
No 429
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.17 E-value=0.12 Score=45.00 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=30.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
.-+++++|..|+||||+...+...+...+.+++.|+
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiE 115 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVE 115 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC
Confidence 457888999999999999988888876677888776
No 430
>PRK13975 thymidylate kinase; Provisional
Probab=93.16 E-value=0.11 Score=42.63 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
+++++-|-.|+||||++..||..+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678889999999999999999885
No 431
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=93.13 E-value=0.23 Score=40.91 Aligned_cols=40 Identities=25% Similarity=0.236 Sum_probs=35.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
+..+-+.|..|+|||++-..+-..|.+. +++.+|-.|...
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t 52 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYT 52 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeec
Confidence 3556788999999999999999999988 999999999765
No 432
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=93.13 E-value=0.12 Score=42.57 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=25.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+.++.+.|.-|+||||++..|+. .|. -+||+|
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~----~g~--~~i~~D 33 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE----LGA--PVIDAD 33 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH----cCC--EEEEec
Confidence 35678889999999999988775 464 578999
No 433
>PRK13949 shikimate kinase; Provisional
Probab=93.10 E-value=0.081 Score=42.69 Aligned_cols=30 Identities=37% Similarity=0.471 Sum_probs=24.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.|-+|+||||++..||..+. .-.+|+|
T Consensus 4 I~liG~~GsGKstl~~~La~~l~-----~~~id~D 33 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELG-----LSFIDLD 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC-----CCeeccc
Confidence 56668999999999999998773 3467877
No 434
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.04 E-value=0.11 Score=43.88 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=31.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHh--CCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~--~G~kVlliD~D 65 (276)
..+++.|..|+|||.+..+++..+.+ .+.+|+.++++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence 34788999999999999999999886 47899999987
No 435
>PRK04182 cytidylate kinase; Provisional
Probab=93.04 E-value=0.094 Score=42.17 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=23.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
+++++|..|+||||++..||..+ |.. ++|+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l---g~~--~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL---GLK--HVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCc--EecH
Confidence 47888999999999999998765 443 4564
No 436
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=92.97 E-value=0.14 Score=42.46 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=25.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHh----CCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAE----VRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~----~G~kVlliD~D 65 (276)
+++.|..|.|||++..+++..++. .+.++.++|.-
T Consensus 41 ~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 41 LLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred EEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 567799999999999999999998 34455565554
No 437
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.92 E-value=0.58 Score=44.62 Aligned_cols=37 Identities=38% Similarity=0.420 Sum_probs=27.2
Q ss_pred chhhhhcCC-ceEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886 18 SVRNILEQD-SLKWVFVGGKGGVGKTTCSSILSILLAE 54 (276)
Q Consensus 18 ~l~~~~~~~-~~~i~v~s~kGGvGKTT~a~~lA~~la~ 54 (276)
.|++.+... -....+++|..|+||||+|..+|..+--
T Consensus 27 ~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 27 ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344554433 3445688899999999999999998853
No 438
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.89 E-value=0.12 Score=41.82 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=25.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++.|..|+||||+|..++..+ |.+++.|+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCC
Confidence 47888999999999999998653 5567666554
No 439
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.86 E-value=0.16 Score=42.26 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=24.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+.++-+.|+.|+||||+|--++ +.| +-+||+|
T Consensus 2 ~~iIglTG~igsGKStva~~~~----~~G--~~vidaD 33 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILA----ELG--FPVIDAD 33 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHH----HcC--CeEEEcc
Confidence 4567777999999999876554 455 4568999
No 440
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=92.81 E-value=0.1 Score=44.30 Aligned_cols=29 Identities=28% Similarity=0.223 Sum_probs=25.4
Q ss_pred CCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 36 KGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 36 kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
-|+.||||+...||..+..+|+||++-..
T Consensus 5 vG~gGKTtl~~~l~~~~~~~g~~v~~TTT 33 (232)
T TIGR03172 5 VGAGGKTSTMFWLAAEYRKEGYRVLVTTT 33 (232)
T ss_pred EcCCcHHHHHHHHHHHHHHCCCeEEEECC
Confidence 45689999999999999999999997544
No 441
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.79 E-value=0.09 Score=45.94 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=26.1
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+.+.|..|+||||++..|+..+...| +.+|.+|.
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd 35 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDD 35 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECcc
Confidence 55679999999999999998886554 44556663
No 442
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.78 E-value=0.17 Score=44.70 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=33.2
Q ss_pred hhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 20 RNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 20 ~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+..+.......+++.|..|+||||++..++..+...+.+...++.+.
T Consensus 30 ~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 30 KSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred HHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 33333333333588999999999999999999887666555566543
No 443
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=92.78 E-value=0.13 Score=41.94 Aligned_cols=33 Identities=36% Similarity=0.429 Sum_probs=26.6
Q ss_pred CCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 35 ~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
|--|+||||.+..|+.+|...|++ .++..-|..
T Consensus 3 GiDGsGKtT~~~~L~~~l~~~~~~-~~~~~~~~~ 35 (186)
T PF02223_consen 3 GIDGSGKTTQIRLLAEALKEKGYK-VIITFPPGS 35 (186)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTEE-EEEEESSTS
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCC
Confidence 456999999999999999999999 445554443
No 444
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=92.69 E-value=0.18 Score=41.86 Aligned_cols=31 Identities=32% Similarity=0.370 Sum_probs=25.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.+.|..|+||||++..|+. .|. -+||+|
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~--~vid~D 32 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGF--LIVDAD 32 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCC--eEEeCc
Confidence 4577889999999999998873 565 468998
No 445
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=92.68 E-value=0.24 Score=45.15 Aligned_cols=36 Identities=31% Similarity=0.141 Sum_probs=31.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
-++-+.|..|+||||++..|...|..+ ++|.+|..+
T Consensus 6 ~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~ 41 (369)
T PRK14490 6 FEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHG 41 (369)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeC
Confidence 456667899999999999999999999 999999754
No 446
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=92.63 E-value=0.16 Score=50.72 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=31.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
++.++.|.+|+||||+...+...+...|++|.++-
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~A 403 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAA 403 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 57889999999999999999988888899999873
No 447
>PRK07429 phosphoribulokinase; Provisional
Probab=92.62 E-value=0.17 Score=45.41 Aligned_cols=38 Identities=39% Similarity=0.352 Sum_probs=28.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+.++-+.|..|+||||++..|+..+...+ +.++..|-.
T Consensus 8 ~~IIgI~G~SGSGKSTla~~L~~ll~~~~--~~vi~~Dd~ 45 (327)
T PRK07429 8 PVLLGVAGDSGCGKTTFLRGLADLLGEEL--VTVICTDDY 45 (327)
T ss_pred CEEEEEECCCCCCHHHHHHHHHhHhccCc--eEEEEeccc
Confidence 45667789999999999999998776543 445556643
No 448
>PRK14530 adenylate kinase; Provisional
Probab=92.60 E-value=0.13 Score=43.14 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=19.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+++.|.+|+||||++..||..+
T Consensus 6 I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5667999999999999998776
No 449
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=92.60 E-value=0.17 Score=51.01 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=36.6
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHh
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAF 74 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l 74 (276)
.++.|+.|+||||+...+...+.+.|.+|.++|.+.. ..+...+
T Consensus 441 ~~I~G~sGsGKS~l~~~l~~~~~~~g~~vviiD~g~sy~~l~~~l 485 (829)
T TIGR03783 441 KFILGPSGSGKSFFTNHLVRQYYEQGTHILLVDTGNSYQGLCELI 485 (829)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhcCCEEEEECCCccHHHHHHHh
Confidence 4777999999999999999999999999999998753 3345555
No 450
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.59 E-value=0.19 Score=50.93 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=38.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC---CChhHHhccc
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA---HNLSDAFQQR 77 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~---~~l~~~l~~~ 77 (276)
..+++.|..|+|||++|..||..+-..+.++..+|+... +..+.++|..
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~ 647 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAP 647 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCC
Confidence 445677999999999999999999888889999998742 3345555543
No 451
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=92.54 E-value=0.088 Score=48.41 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=30.7
Q ss_pred CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (276)
Q Consensus 36 kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~ 77 (276)
.-|+||||++..|+.+|.+.|+++.+-=- ++++.-.||.+
T Consensus 64 PaGEGKsTttiGL~~al~~lgK~~i~alR--ePSlGP~fGiK 103 (554)
T COG2759 64 PAGEGKTTTTIGLVDALNKLGKKAIIALR--EPSLGPVFGIK 103 (554)
T ss_pred CCCCCcceeeehHHHHHHhcCchheEEec--cCCcCCccccc
Confidence 66999999999999999999999876433 34444455544
No 452
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=92.52 E-value=0.54 Score=40.24 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=46.2
Q ss_pred ccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886 16 EGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76 (276)
Q Consensus 16 ~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~ 76 (276)
..+....+.+.+..=+..-|--|+|||++.-++...++..|.|++=|+-+.-..+...+..
T Consensus 40 ~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~ 100 (249)
T PF05673_consen 40 IENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDL 100 (249)
T ss_pred HHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHH
Confidence 3344455555554445668999999999999999999999999888887766777666643
No 453
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=92.51 E-value=0.11 Score=43.28 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=18.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+++.|.+|+||||+|..||..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4667899999999999988644
No 454
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=92.50 E-value=0.13 Score=42.40 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=21.7
Q ss_pred EEEEeCCCCchHHHHHHHH-HHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSIL-SILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~l-A~~la~~G~kVlliD~D 65 (276)
|.++.|++|.|||+.|+.. ....-+.|++|.. ..+
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~ 37 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIP 37 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---T
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccC
Confidence 4688899999999999998 6665577877765 544
No 455
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.49 E-value=0.17 Score=40.64 Aligned_cols=25 Identities=44% Similarity=0.399 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
++++++.|-+||||||+.-.+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5778888999999999998877666
No 456
>PRK13976 thymidylate kinase; Provisional
Probab=92.48 E-value=0.22 Score=41.73 Aligned_cols=37 Identities=30% Similarity=0.555 Sum_probs=29.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhC-C-CcEEEEecCCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEV-R-PSVLIISTDPA 67 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~-G-~kVlliD~D~~ 67 (276)
++++-|--|+||||.+..|+..|... | ++|.+. -.|.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~-~eP~ 40 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT-REPG 40 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe-eCCC
Confidence 46778899999999999999999986 6 577644 3443
No 457
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=92.48 E-value=0.074 Score=41.77 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=25.5
Q ss_pred CCCCchHHHHHHHHHHHHHhCCCcEEEEecCC---CCChhHH
Q 023886 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDP---AHNLSDA 73 (276)
Q Consensus 35 ~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~---~~~l~~~ 73 (276)
|-.|+||||++..||..|. --.||.|- +.|+..+
T Consensus 2 GVsG~GKStvg~~lA~~lg-----~~fidGDdlHp~aNi~KM 38 (161)
T COG3265 2 GVSGSGKSTVGSALAERLG-----AKFIDGDDLHPPANIEKM 38 (161)
T ss_pred CCCccCHHHHHHHHHHHcC-----CceecccccCCHHHHHHH
Confidence 5679999999999998876 34689994 4454433
No 458
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.42 E-value=0.13 Score=41.92 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.0
Q ss_pred EEEeCCCCchHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSIL 51 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~ 51 (276)
+++-|.+|+||||.|..||..
T Consensus 3 iiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 455689999999999999976
No 459
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.41 E-value=0.12 Score=41.75 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+++++.|..|+||||++..|+..+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 467888999999999988888754
No 460
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=92.41 E-value=0.23 Score=41.46 Aligned_cols=32 Identities=28% Similarity=0.261 Sum_probs=24.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
..++.+.|..|+||||++.-|+. .|.. ++|+|
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~----~g~~--v~d~D 36 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAE----MGCE--LFEAD 36 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----CCCe--EEecc
Confidence 34567789999999999887764 5654 57888
No 461
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.40 E-value=0.21 Score=33.21 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHh
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAE 54 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~ 54 (276)
+.++.|+.|+||||+--++-..|-.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5788999999999998888776653
No 462
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.39 E-value=0.13 Score=43.08 Aligned_cols=43 Identities=16% Similarity=-0.004 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHH
Q 023886 200 ALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246 (276)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~ 246 (276)
.+..|++.+++....+.+.|.... .++.+-...+..++...+.
T Consensus 167 ~i~~Rl~~y~~~~~~i~~~y~~~~----~~~~id~~~~~~~v~~~i~ 209 (215)
T PRK00279 167 TVRKRLEVYHKQTAPLIDYYKKKG----KLKKIDGTGSIDEVFADIL 209 (215)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhCC----CEEEEECCCCHHHHHHHHH
Confidence 344888888888899999887642 2333444566666554443
No 463
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.39 E-value=0.13 Score=41.98 Aligned_cols=25 Identities=28% Similarity=0.221 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
.+++++||..||||||+...|=...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999998875444
No 464
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=92.38 E-value=0.21 Score=42.10 Aligned_cols=35 Identities=31% Similarity=0.257 Sum_probs=29.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCc--EEEEec
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPS--VLIIST 64 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~k--VlliD~ 64 (276)
+++++|-+-.||||-|..|..+|.++|.| |.++|-
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d 39 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD 39 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech
Confidence 57888999999999999999999999854 565553
No 465
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=92.38 E-value=0.14 Score=48.68 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=30.4
Q ss_pred CCCchHHHHHHHHHHHHH-hCCCcEEEEecCCCCChhHHhccc
Q 023886 36 KGGVGKTTCSSILSILLA-EVRPSVLIISTDPAHNLSDAFQQR 77 (276)
Q Consensus 36 kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~~~l~~~l~~~ 77 (276)
.-|+||||++..|+.+|. +.|+|+.+.== |+++.-.||.+
T Consensus 80 P~GEGKtTttIGL~~aL~~~lgk~~~~~lR--ePSlGP~FGiK 120 (625)
T PTZ00386 80 PLGEGKSTTTIGLAQSLGAHLHRKTFACIR--QPSQGPTFGIK 120 (625)
T ss_pred CCCCCccchhhhhHHHHHHHhCcceEEEEe--cCCcCCcCCcc
Confidence 679999999999999999 78999886543 34444445544
No 466
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=92.36 E-value=0.29 Score=40.91 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=30.6
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
+.+++=|--|+||||.+..|+..|.+.|.+|.+.=
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45777789999999999999999999999888653
No 467
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.34 E-value=0.34 Score=48.40 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=26.1
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhC-------CCcEEEEec
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEV-------RPSVLIIST 64 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~-------G~kVlliD~ 64 (276)
++..|.+|+|||+++..+|..+++. |+++.-+|+
T Consensus 206 ~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 206 PLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 3566999999999999999999764 455555553
No 468
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=92.30 E-value=0.81 Score=45.38 Aligned_cols=40 Identities=13% Similarity=0.048 Sum_probs=24.7
Q ss_pred eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY 265 (276)
Q Consensus 225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~ 265 (276)
+.+++|.......-.+....+..+++.++++. +++|++-.
T Consensus 100 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~ 139 (689)
T TIGR00484 100 DGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDK 139 (689)
T ss_pred CEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCC
Confidence 34555554444334455677777777787764 78888753
No 469
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.26 E-value=0.16 Score=47.12 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=25.3
Q ss_pred hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+.+++.+....-+++.|.+|+||||+|..+|..+
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5555555544456678999999999999998643
No 470
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.25 E-value=0.13 Score=44.38 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=22.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAE 54 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~ 54 (276)
..++++.|.+|+||||++..++..+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 446788899999999999999877663
No 471
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=0.1 Score=50.78 Aligned_cols=35 Identities=23% Similarity=0.139 Sum_probs=28.7
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcE
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSV 59 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kV 59 (276)
....+|+.++|.+|||||+++..+|.+|-+.=.|.
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRf 469 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRF 469 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEE
Confidence 34468899999999999999999999987654444
No 472
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=92.23 E-value=1.3 Score=43.18 Aligned_cols=40 Identities=8% Similarity=0.090 Sum_probs=28.8
Q ss_pred eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY 265 (276)
Q Consensus 225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~ 265 (276)
+.+++|.-...-...++...+..+.+.++++ -+++|++-.
T Consensus 89 D~alLVVDa~~G~~~qT~~~l~~a~~~~ip~-IVviNKiD~ 128 (594)
T TIGR01394 89 DGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDR 128 (594)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHCCCCE-EEEEECCCC
Confidence 5566666665555677778888888888886 578888854
No 473
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.21 E-value=0.16 Score=42.34 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.5
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHH
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA 49 (276)
....+++++.|..|+||||++..|.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHH
Confidence 3456778889999999999887765
No 474
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.20 E-value=0.96 Score=44.23 Aligned_cols=37 Identities=38% Similarity=0.385 Sum_probs=27.6
Q ss_pred chhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886 18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE 54 (276)
Q Consensus 18 ~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~ 54 (276)
.|++.+.. +.....+++|..|+||||+|..||..|--
T Consensus 27 ~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 27 ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34444443 33456688999999999999999998864
No 475
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=92.17 E-value=0.2 Score=43.01 Aligned_cols=32 Identities=28% Similarity=0.257 Sum_probs=24.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.++.+.|.-|+||||++.-|+.. .|.. +||+|
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~---~G~~--viDaD 33 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREE---HHIE--VIDAD 33 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH---cCCe--EEehH
Confidence 45777899999999998776642 2654 49999
No 476
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.14 E-value=0.15 Score=40.66 Aligned_cols=31 Identities=35% Similarity=0.476 Sum_probs=24.4
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++++|-.|+||||+|..||..+ |.. ++|.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l---g~~--~~~~~ 32 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL---SLK--LISAG 32 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCc--eecHH
Confidence 57889999999999999998754 544 56654
No 477
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=92.10 E-value=1.8 Score=39.85 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=21.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVR 56 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G 56 (276)
..+.+.|.-+.||||++-.|...+...|
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~~~~g 40 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVLAKEG 40 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhHHHhh
Confidence 3356778999999999999976655444
No 478
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=92.07 E-value=0.16 Score=42.36 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
.+++++|-=|+||||+|..||.++.
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHhC
Confidence 4578899999999999999998876
No 479
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=92.02 E-value=0.17 Score=41.84 Aligned_cols=38 Identities=29% Similarity=0.214 Sum_probs=34.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhC--C-CcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEV--R-PSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~--G-~kVlliD~D 65 (276)
+-++++||.-|+||||++.+|-..+.++ + +++.-+..|
T Consensus 31 Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvD 71 (282)
T KOG2878|consen 31 PLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVD 71 (282)
T ss_pred cEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEec
Confidence 6788999999999999999999999875 3 589999998
No 480
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=92.00 E-value=0.17 Score=41.42 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=23.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.|..|+||||++..|+... |.. ++|+|
T Consensus 2 i~itG~~gsGKst~~~~l~~~~---~~~--~i~~D 31 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKY---HFP--VIDAD 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhc---CCe--EEeCC
Confidence 6788999999999998777532 344 58998
No 481
>PLN02840 tRNA dimethylallyltransferase
Probab=91.97 E-value=0.17 Score=46.79 Aligned_cols=34 Identities=32% Similarity=0.400 Sum_probs=26.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
...++++.|..|+||||+|..||..+. .. +|.+|
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~---~~--iis~D 53 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLN---GE--IISAD 53 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCC---CC--eEecc
Confidence 356789999999999999999998763 22 46666
No 482
>PRK13351 elongation factor G; Reviewed
Probab=91.96 E-value=0.84 Score=45.26 Aligned_cols=39 Identities=21% Similarity=0.120 Sum_probs=25.0
Q ss_pred eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc
Q 023886 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL 264 (276)
Q Consensus 225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~ 264 (276)
+.+++|.........++...+..++..++++. +|+|++-
T Consensus 98 D~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D 136 (687)
T PRK13351 98 DGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMD 136 (687)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCC
Confidence 44566555544444556677777777777764 7888874
No 483
>PRK03003 GTP-binding protein Der; Reviewed
Probab=91.91 E-value=1.7 Score=41.03 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=17.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHH
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA 49 (276)
++..+.+-|.+||||||+.-.|.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~ 59 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRIL 59 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHh
Confidence 34445666999999999988775
No 484
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=91.80 E-value=0.26 Score=49.66 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=35.4
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhc
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQ 75 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~ 75 (276)
.++.|..|.|||+++..++..+...|.+|.+||-+.. ..+...+|
T Consensus 433 ~~I~G~tGsGKS~~~~~l~~~~~~~g~~v~iiD~~~sy~~l~~~~g 478 (797)
T TIGR02746 433 IAVVGGSGAGKSFFMQELIVDNLSRGGKVWVIDVGRSYKKLCEMLG 478 (797)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHcC
Confidence 5677999999999999999988889999999887642 22344444
No 485
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.78 E-value=0.22 Score=50.50 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=31.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHh-------CCCcEEEEecCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAE-------VRPSVLIISTDP 66 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~-------~G~kVlliD~D~ 66 (276)
-.+.-|.+|||||+++..||..+.. .|+++..+|+..
T Consensus 201 n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~ 244 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 244 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence 3456699999999999999999864 478999888874
No 486
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=91.74 E-value=0.3 Score=49.18 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=41.8
Q ss_pred hhhccccccchhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhC----C---CcEEEEecC
Q 023886 9 DQELEIPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV----R---PSVLIISTD 65 (276)
Q Consensus 9 ~~~~~~~~~~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~----G---~kVlliD~D 65 (276)
.++++.+..-|...+.+ .+..+++++|++|+|||+++..+...|.+. + .+|+.|++-
T Consensus 761 EeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 761 EKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 45667777777776653 344678899999999999999998888531 2 456777774
No 487
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=91.73 E-value=2.7 Score=33.70 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
.|++.+.|.-.+||||++-.||..+
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~f 32 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIF 32 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHh
Confidence 3556666778899999999999433
No 488
>PTZ00088 adenylate kinase 1; Provisional
Probab=91.61 E-value=0.18 Score=42.82 Aligned_cols=30 Identities=33% Similarity=0.351 Sum_probs=23.1
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.|.+|+||||+|..||..+ | +-.|++|
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~---g--~~~is~g 38 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE---N--LKHINMG 38 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---C--CcEEECC
Confidence 5567899999999999988754 3 4556666
No 489
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=91.59 E-value=0.29 Score=51.35 Aligned_cols=39 Identities=28% Similarity=0.350 Sum_probs=29.3
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
....+++.+.|.||+||||+|..++..+...-.-.+.+|
T Consensus 204 ~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~ 242 (1153)
T PLN03210 204 SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFID 242 (1153)
T ss_pred cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEee
Confidence 345678888899999999999999988876533233444
No 490
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=91.54 E-value=0.13 Score=41.16 Aligned_cols=26 Identities=35% Similarity=0.236 Sum_probs=19.8
Q ss_pred EEeCCCCchHHHHHHHHHHHHHhCCC
Q 023886 32 FVGGKGGVGKTTCSSILSILLAEVRP 57 (276)
Q Consensus 32 v~s~kGGvGKTT~a~~lA~~la~~G~ 57 (276)
+--+--|+||||++..|+..+.+-|+
T Consensus 3 vPIAtiGCGKTTva~aL~~LFg~wgH 28 (168)
T PF08303_consen 3 VPIATIGCGKTTVALALSNLFGEWGH 28 (168)
T ss_pred eeecCCCcCHHHHHHHHHHHcCCCCc
Confidence 34457899999999999987754443
No 491
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=91.54 E-value=0.096 Score=40.23 Aligned_cols=43 Identities=30% Similarity=0.257 Sum_probs=24.1
Q ss_pred EEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886 32 FVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (276)
Q Consensus 32 v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~ 77 (276)
+.-|-+|+||||++..||..+...=+| |-+-|.---++.+|..
T Consensus 3 Lleg~PG~GKT~la~~lA~~~~~~f~R---Iq~tpdllPsDi~G~~ 45 (131)
T PF07726_consen 3 LLEGVPGVGKTTLAKALARSLGLSFKR---IQFTPDLLPSDILGFP 45 (131)
T ss_dssp EEES---HHHHHHHHHHHHHTT--EEE---EE--TT--HHHHHEEE
T ss_pred eeECCCccHHHHHHHHHHHHcCCceeE---EEecCCCCcccceeee
Confidence 456889999999999999876543233 3333444457777764
No 492
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=91.51 E-value=0.32 Score=47.41 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=34.1
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
.++-|.-|+|||++..+|+....+.|..|+++|-+-...
T Consensus 183 tlV~GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkgD~e 221 (643)
T TIGR03754 183 TLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDAD 221 (643)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHH
Confidence 467799999999999999999999999999998886543
No 493
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.50 E-value=0.15 Score=45.04 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=25.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
..-+++.|.+|+|||++|..+|..+. .++..++..
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~---~~~~~~~~~ 64 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMG---VNLKITSGP 64 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC---CCEEEeccc
Confidence 34467889999999999999988663 344444443
No 494
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=91.48 E-value=0.2 Score=50.25 Aligned_cols=35 Identities=34% Similarity=0.436 Sum_probs=31.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++-|-+|.||||+-+.|-..|...|+||||...=
T Consensus 688 ~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyT 722 (1100)
T KOG1805|consen 688 ALILGMPGTGKTTTISLLIKILVALGKKVLLTSYT 722 (1100)
T ss_pred heeecCCCCCchhhHHHHHHHHHHcCCeEEEEehh
Confidence 45678999999999999999999999999998643
No 495
>PLN02459 probable adenylate kinase
Probab=91.42 E-value=0.27 Score=42.52 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHH
Q 023886 200 ALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246 (276)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~ 246 (276)
.+.+|++.+.+....+.+.|.+... ++.+-...++.++.+-+.
T Consensus 204 ~i~kRL~~Y~~~t~pv~~~Y~~~g~----l~~id~~~~~~eV~~~i~ 246 (261)
T PLN02459 204 VVKARLRVYKEESQPVEDFYRKRGK----LLEFELPGGIPETWPRLL 246 (261)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhcCC----eEEEeCCCCHHHHHHHHH
Confidence 4458889999999999999987532 233334445666544333
No 496
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=91.38 E-value=0.26 Score=49.95 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=36.8
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhcc
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQ 76 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~ 76 (276)
.++.|+.|.||||++..++..+...|.+|.++|-+.. ..+...+|.
T Consensus 452 ~~I~G~sGsGKS~l~k~l~~~~~~~g~~viiiD~~~sy~~l~~~lGG 498 (844)
T PRK13721 452 MAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKSLCENMGG 498 (844)
T ss_pred EEEEcCCCCCHHHHHHHHHHhhhccCCEEEEEeCCCCHHHHHHHcCC
Confidence 5677999999999999999888888999999988853 234555543
No 497
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.37 E-value=0.18 Score=41.67 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=22.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+.+++++.|..|+||||++..|+..+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34667888999999999999998865
No 498
>PLN02748 tRNA dimethylallyltransferase
Probab=91.36 E-value=0.26 Score=46.28 Aligned_cols=33 Identities=36% Similarity=0.386 Sum_probs=27.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+++++.|..|+|||++|..||..+ ..-+|++|
T Consensus 22 ~~~i~i~GptgsGKs~la~~la~~~-----~~eii~~D 54 (468)
T PLN02748 22 AKVVVVMGPTGSGKSKLAVDLASHF-----PVEIINAD 54 (468)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc-----CeeEEcCc
Confidence 4577888999999999999998765 36688999
No 499
>PLN02318 phosphoribulokinase/uridine kinase
Probab=91.32 E-value=0.31 Score=47.04 Aligned_cols=39 Identities=33% Similarity=0.482 Sum_probs=30.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
+...|+.+.|..|+||||++..|+..+ ..+.+|..|-..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL----p~vgvIsmDdy~ 101 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVISMDNYN 101 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC----CCcEEEEEccee
Confidence 345777899999999999999998765 246778777543
No 500
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.30 E-value=0.26 Score=47.73 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=32.4
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHh--CCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~--~G~kVlliD~D 65 (276)
-+|+.|..|+|||.++.++|..+.+ .|++|+.+.++
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae 353 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE 353 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4789999999999999999999876 48999999986
Done!