Query 023886
Match_columns 276
No_of_seqs 237 out of 1800
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 14:26:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023886.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023886hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iqw_A Tail-anchored protein t 100.0 8.9E-43 3.1E-47 310.4 20.9 259 14-273 2-271 (334)
2 3io3_A DEHA2D07832P; chaperone 100.0 1.7E-41 5.8E-46 303.6 15.6 253 14-273 4-281 (348)
3 3ug7_A Arsenical pump-driving 100.0 9.1E-40 3.1E-44 293.4 22.9 262 7-268 4-281 (349)
4 2woo_A ATPase GET3; tail-ancho 100.0 4.6E-39 1.6E-43 286.7 18.6 254 11-266 2-263 (329)
5 3zq6_A Putative arsenical pump 100.0 3.6E-37 1.2E-41 274.0 24.5 248 19-268 3-266 (324)
6 2woj_A ATPase GET3; tail-ancho 100.0 1.2E-37 4.2E-42 279.8 20.5 246 15-267 5-279 (354)
7 3igf_A ALL4481 protein; two-do 100.0 1.4E-36 4.9E-41 273.5 17.1 230 28-262 2-252 (374)
8 1ihu_A Arsenical pump-driving 100.0 2.1E-28 7E-33 233.8 14.0 220 26-268 6-242 (589)
9 3la6_A Tyrosine-protein kinase 99.9 2.6E-27 8.7E-32 206.7 15.5 192 7-268 71-269 (286)
10 3bfv_A CAPA1, CAPB2, membrane 99.9 2.7E-26 9.4E-31 198.8 13.0 193 6-268 60-259 (271)
11 3cio_A ETK, tyrosine-protein k 99.9 4.1E-26 1.4E-30 200.5 11.0 191 7-267 83-280 (299)
12 3kjh_A CO dehydrogenase/acetyl 99.9 7.6E-26 2.6E-30 192.7 7.9 176 28-265 1-195 (254)
13 1ihu_A Arsenical pump-driving 99.9 7.3E-25 2.5E-29 209.3 12.8 207 18-267 314-533 (589)
14 3ea0_A ATPase, para family; al 99.9 9.8E-26 3.4E-30 191.7 5.6 171 26-267 3-186 (245)
15 2ph1_A Nucleotide-binding prot 99.9 7.6E-24 2.6E-28 182.5 16.0 176 26-265 17-194 (262)
16 3k9g_A PF-32 protein; ssgcid, 99.9 5.4E-24 1.8E-28 183.7 14.6 182 15-263 15-207 (267)
17 2oze_A ORF delta'; para, walke 99.9 4.2E-24 1.4E-28 187.2 13.3 186 19-266 26-225 (298)
18 1wcv_1 SOJ, segregation protei 99.9 1.4E-24 4.8E-29 186.5 10.1 171 25-266 4-182 (257)
19 3end_A Light-independent proto 99.9 1.2E-23 4E-28 185.2 14.8 189 13-265 26-225 (307)
20 4dzz_A Plasmid partitioning pr 99.9 1.2E-23 4.2E-28 174.0 13.9 137 28-266 2-143 (206)
21 3pg5_A Uncharacterized protein 99.9 1.6E-24 5.5E-29 195.1 8.4 180 28-267 2-256 (361)
22 1g3q_A MIND ATPase, cell divis 99.9 2.2E-23 7.5E-28 176.4 14.1 169 28-267 3-177 (237)
23 3q9l_A Septum site-determining 99.9 4.4E-23 1.5E-27 176.8 15.4 168 28-265 3-185 (260)
24 1hyq_A MIND, cell division inh 99.9 4.6E-23 1.6E-27 177.3 13.9 168 28-266 3-175 (263)
25 3fwy_A Light-independent proto 99.9 2.9E-23 1E-27 183.2 11.4 176 28-264 48-231 (314)
26 3ez2_A Plasmid partition prote 99.9 5.6E-23 1.9E-27 187.3 6.7 135 26-161 107-264 (398)
27 3cwq_A Para family chromosome 99.9 9.8E-22 3.4E-26 163.8 12.4 131 29-267 2-134 (209)
28 2afh_E Nitrogenase iron protei 99.9 2.6E-22 8.8E-27 175.2 8.4 48 28-76 3-50 (289)
29 1cp2_A CP2, nitrogenase iron p 99.9 2.8E-22 9.5E-27 172.9 8.4 173 29-265 3-186 (269)
30 2xj4_A MIPZ; replication, cell 99.9 5.2E-22 1.8E-26 173.2 7.0 111 28-156 5-118 (286)
31 3ez9_A Para; DNA binding, wing 99.9 2.9E-22 9.8E-27 182.9 5.6 53 26-78 110-168 (403)
32 3fkq_A NTRC-like two-domain pr 99.8 8.2E-22 2.8E-26 178.2 7.8 55 25-79 141-195 (373)
33 1byi_A Dethiobiotin synthase; 99.8 1.6E-18 5.6E-23 145.1 13.6 176 28-266 2-180 (224)
34 2xxa_A Signal recognition part 99.6 4.2E-15 1.4E-19 136.3 14.4 44 28-71 100-144 (433)
35 1j8m_F SRP54, signal recogniti 99.5 4.9E-14 1.7E-18 123.2 11.1 44 28-71 98-141 (297)
36 1zu4_A FTSY; GTPase, signal re 99.5 1.8E-12 6.2E-17 114.4 20.1 43 28-70 105-147 (320)
37 1yrb_A ATP(GTP)binding protein 99.5 1.1E-13 3.7E-18 118.3 9.4 43 28-71 14-56 (262)
38 1ls1_A Signal recognition part 99.5 3.6E-13 1.2E-17 117.6 11.7 44 28-71 98-141 (295)
39 3dm5_A SRP54, signal recogniti 99.4 6.6E-13 2.2E-17 121.4 11.9 43 28-70 100-142 (443)
40 2ffh_A Protein (FFH); SRP54, s 99.4 7.3E-13 2.5E-17 120.8 11.6 44 28-71 98-141 (425)
41 2j37_W Signal recognition part 99.3 1E-11 3.5E-16 115.6 13.2 44 28-71 101-144 (504)
42 3of5_A Dethiobiotin synthetase 99.3 1.5E-11 5E-16 103.4 12.7 169 27-266 4-182 (228)
43 2v3c_C SRP54, signal recogniti 99.3 2.4E-11 8.2E-16 111.3 12.8 42 29-70 100-141 (432)
44 3fgn_A Dethiobiotin synthetase 99.3 9E-11 3.1E-15 99.9 15.5 179 15-265 14-198 (251)
45 2r8r_A Sensor protein; KDPD, P 99.3 1.4E-11 4.7E-16 102.7 9.6 46 28-73 6-51 (228)
46 3kl4_A SRP54, signal recogniti 99.3 2.1E-11 7.1E-16 111.4 10.4 43 27-69 96-138 (433)
47 3qxc_A Dethiobiotin synthetase 99.2 3.8E-10 1.3E-14 95.5 14.8 172 28-267 22-203 (242)
48 1vma_A Cell division protein F 99.2 1.2E-09 4E-14 95.7 18.2 43 27-69 103-145 (306)
49 2px0_A Flagellar biosynthesis 99.1 8.6E-10 2.9E-14 96.2 14.6 42 28-69 105-147 (296)
50 3p32_A Probable GTPase RV1496/ 99.0 1.2E-09 4.2E-14 97.6 9.0 44 27-70 78-121 (355)
51 2p67_A LAO/AO transport system 98.4 9.5E-07 3.2E-11 78.4 10.0 44 27-70 55-98 (341)
52 2yhs_A FTSY, cell division pro 98.3 3.4E-05 1.2E-09 71.2 17.8 43 27-69 292-334 (503)
53 3pzx_A Formate--tetrahydrofola 98.2 2.2E-06 7.4E-11 78.0 7.6 69 9-79 33-110 (557)
54 1u94_A RECA protein, recombina 98.1 6E-06 2.1E-10 73.6 8.5 50 19-68 51-103 (356)
55 2wsm_A Hydrogenase expression/ 98.0 3.2E-06 1.1E-10 69.6 4.1 50 19-69 21-70 (221)
56 2cvh_A DNA repair and recombin 98.0 1.1E-05 3.7E-10 66.2 6.9 42 27-71 19-60 (220)
57 1xp8_A RECA protein, recombina 98.0 2.1E-05 7.3E-10 70.3 9.3 52 18-69 61-115 (366)
58 1g5t_A COB(I)alamin adenosyltr 98.0 1.7E-05 5.9E-10 64.4 7.7 39 28-67 29-67 (196)
59 3e70_C DPA, signal recognition 97.9 4.7E-05 1.6E-09 67.0 10.2 43 26-68 127-169 (328)
60 2zr9_A Protein RECA, recombina 97.8 7.3E-05 2.5E-09 66.4 8.6 51 18-68 48-101 (349)
61 2hf9_A Probable hydrogenase ni 97.7 4E-05 1.4E-09 63.1 5.8 50 19-69 29-78 (226)
62 1rj9_A FTSY, signal recognitio 97.7 0.00015 5.1E-09 63.1 9.3 41 28-68 102-142 (304)
63 2yvu_A Probable adenylyl-sulfa 97.6 6E-05 2E-09 60.3 5.4 40 27-66 12-51 (186)
64 3io5_A Recombination and repai 97.6 0.00025 8.6E-09 61.8 9.0 40 30-69 30-71 (333)
65 3hr8_A Protein RECA; alpha and 97.6 0.00029 1E-08 62.6 9.7 52 18-69 48-102 (356)
66 1xjc_A MOBB protein homolog; s 97.6 0.0001 3.5E-09 58.5 5.8 40 28-67 4-43 (169)
67 2b8t_A Thymidine kinase; deoxy 97.5 0.00034 1.2E-08 58.1 7.8 35 28-62 12-46 (223)
68 1v5w_A DMC1, meiotic recombina 97.4 0.00027 9.2E-09 62.5 7.3 49 19-67 111-167 (343)
69 2obn_A Hypothetical protein; s 97.4 0.0012 4E-08 58.3 10.9 37 27-63 152-188 (349)
70 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.00017 5.8E-09 61.2 5.3 39 28-66 4-42 (260)
71 4a0g_A Adenosylmethionine-8-am 97.4 0.0029 9.8E-08 62.4 14.5 38 227-264 234-271 (831)
72 2z43_A DNA repair and recombin 97.3 0.00025 8.7E-09 62.1 6.0 50 18-67 95-152 (324)
73 1n0w_A DNA repair protein RAD5 97.3 0.00047 1.6E-08 57.1 6.5 49 19-67 13-69 (243)
74 1nks_A Adenylate kinase; therm 97.2 0.00026 8.8E-09 56.5 4.5 37 29-65 2-38 (194)
75 2www_A Methylmalonic aciduria 97.2 0.0019 6.6E-08 57.1 10.0 42 28-69 74-115 (349)
76 2dr3_A UPF0273 protein PH0284; 97.1 0.00057 1.9E-08 56.7 5.4 40 28-67 23-62 (247)
77 3bh0_A DNAB-like replicative h 97.1 0.00056 1.9E-08 59.7 5.3 50 18-67 57-107 (315)
78 1s1m_A CTP synthase; CTP synth 97.1 0.026 8.7E-07 52.7 16.6 43 29-71 5-48 (545)
79 2i1q_A DNA repair and recombin 97.1 0.00034 1.2E-08 61.1 3.8 50 18-67 86-153 (322)
80 2qm8_A GTPase/ATPase; G protei 97.1 0.0022 7.7E-08 56.4 9.1 43 26-68 53-95 (337)
81 2rdo_7 EF-G, elongation factor 97.0 0.0017 5.8E-08 62.9 8.5 21 31-51 13-33 (704)
82 3bgw_A DNAB-like replicative h 97.0 0.00071 2.4E-08 61.9 5.1 50 19-68 187-237 (444)
83 1np6_A Molybdopterin-guanine d 96.9 0.0013 4.5E-08 52.3 5.9 41 28-68 6-46 (174)
84 1rz3_A Hypothetical protein rb 96.9 0.0011 3.9E-08 53.6 5.5 41 26-66 20-60 (201)
85 4a1f_A DNAB helicase, replicat 96.9 0.0009 3.1E-08 59.0 5.2 50 18-67 35-85 (338)
86 3cmw_A Protein RECA, recombina 96.9 0.0024 8.3E-08 66.9 9.0 52 18-69 370-424 (1706)
87 3bos_A Putative DNA replicatio 96.9 0.0013 4.6E-08 53.9 5.7 48 19-66 43-90 (242)
88 3cmu_A Protein RECA, recombina 96.8 0.002 7E-08 68.4 8.0 51 18-68 1414-1467(2050)
89 1uj2_A Uridine-cytidine kinase 96.8 0.00097 3.3E-08 56.0 4.4 41 26-66 20-65 (252)
90 3b9q_A Chloroplast SRP recepto 96.8 0.002 7E-08 55.8 6.5 42 27-68 99-140 (302)
91 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0016 5.4E-08 53.3 5.3 40 28-67 23-62 (235)
92 1kht_A Adenylate kinase; phosp 96.7 0.0011 3.7E-08 52.7 4.0 37 29-65 4-40 (192)
93 1m7g_A Adenylylsulfate kinase; 96.7 0.0015 5.1E-08 53.2 4.9 43 24-66 21-64 (211)
94 3lda_A DNA repair protein RAD5 96.7 0.0017 5.7E-08 58.6 5.6 50 18-67 166-223 (400)
95 1vco_A CTP synthetase; tetrame 96.7 0.053 1.8E-06 50.6 15.6 43 29-71 14-57 (550)
96 2og2_A Putative signal recogni 96.7 0.0027 9.3E-08 56.4 6.6 42 27-68 156-197 (359)
97 2w58_A DNAI, primosome compone 96.7 0.0018 6.2E-08 52.1 5.1 37 29-65 55-91 (202)
98 3cmu_A Protein RECA, recombina 96.7 0.0047 1.6E-07 65.7 9.2 52 18-69 370-424 (2050)
99 3uie_A Adenylyl-sulfate kinase 96.7 0.0021 7.3E-08 51.8 5.4 41 26-66 23-63 (200)
100 2zts_A Putative uncharacterize 96.7 0.0016 5.6E-08 53.9 4.7 50 18-67 18-70 (251)
101 1a7j_A Phosphoribulokinase; tr 96.6 0.001 3.5E-08 57.4 3.4 41 28-68 5-45 (290)
102 2pez_A Bifunctional 3'-phospho 96.6 0.0022 7.5E-08 50.7 5.1 39 28-66 5-43 (179)
103 3ec2_A DNA replication protein 96.6 0.0017 5.7E-08 51.4 4.1 36 28-63 38-74 (180)
104 2q6t_A DNAB replication FORK h 96.5 0.0024 8.4E-08 58.3 5.3 50 18-67 189-240 (444)
105 1q57_A DNA primase/helicase; d 96.5 0.0017 5.9E-08 60.2 4.3 50 18-67 231-282 (503)
106 2r6a_A DNAB helicase, replicat 96.5 0.0029 9.8E-08 58.0 5.7 41 27-67 202-243 (454)
107 1pzn_A RAD51, DNA repair and r 96.5 0.0051 1.7E-07 54.4 7.1 49 19-67 120-176 (349)
108 2orw_A Thymidine kinase; TMTK, 96.5 0.0028 9.5E-08 50.8 4.7 35 29-63 4-38 (184)
109 4a74_A DNA repair and recombin 96.4 0.0056 1.9E-07 50.0 6.5 40 28-67 25-70 (231)
110 2pbr_A DTMP kinase, thymidylat 96.4 0.004 1.4E-07 49.4 5.4 34 30-63 2-35 (195)
111 1qhx_A CPT, protein (chloramph 96.4 0.002 7E-08 50.6 3.5 34 29-65 4-37 (178)
112 2gks_A Bifunctional SAT/APS ki 96.4 0.0027 9.1E-08 59.7 4.8 39 28-66 372-410 (546)
113 1cr0_A DNA primase/helicase; R 96.4 0.0037 1.3E-07 53.6 5.3 41 26-66 33-74 (296)
114 2qby_B CDC6 homolog 3, cell di 96.4 0.0021 7E-08 57.0 3.7 56 10-65 27-90 (384)
115 1jbk_A CLPB protein; beta barr 96.4 0.0047 1.6E-07 48.4 5.4 38 27-64 42-86 (195)
116 2v1u_A Cell division control p 96.3 0.003 1E-07 55.7 4.6 59 11-69 27-91 (387)
117 3cmw_A Protein RECA, recombina 96.3 0.013 4.3E-07 61.6 9.7 61 18-78 1418-1483(1706)
118 1xx6_A Thymidine kinase; NESG, 96.3 0.0066 2.3E-07 48.9 6.0 36 28-63 8-43 (191)
119 2z0h_A DTMP kinase, thymidylat 96.3 0.0056 1.9E-07 48.8 5.6 35 30-64 2-36 (197)
120 2p65_A Hypothetical protein PF 96.3 0.0045 1.6E-07 48.4 4.8 29 26-54 41-69 (187)
121 2kjq_A DNAA-related protein; s 96.2 0.0046 1.6E-07 47.7 4.6 39 27-65 35-73 (149)
122 2qgz_A Helicase loader, putati 96.2 0.0051 1.8E-07 53.4 5.2 38 28-65 152-190 (308)
123 2c5m_A CTP synthase; cytidine 96.2 0.12 4.1E-06 43.2 12.8 44 28-71 24-68 (294)
124 1d2e_A Elongation factor TU (E 96.2 0.054 1.8E-06 48.5 11.9 27 31-57 6-32 (397)
125 1nn5_A Similar to deoxythymidy 96.2 0.0063 2.1E-07 49.2 5.3 35 29-63 10-44 (215)
126 2plr_A DTMP kinase, probable t 96.2 0.0058 2E-07 49.2 5.1 35 29-64 5-39 (213)
127 1ly1_A Polynucleotide kinase; 96.1 0.0049 1.7E-07 48.3 4.4 34 28-65 2-35 (181)
128 3te6_A Regulatory protein SIR3 96.1 0.0056 1.9E-07 53.4 5.0 59 9-67 26-91 (318)
129 2qby_A CDC6 homolog 1, cell di 96.1 0.0033 1.1E-07 55.4 3.5 55 12-66 29-86 (386)
130 1fnn_A CDC6P, cell division co 96.1 0.0059 2E-07 54.0 5.1 58 12-69 26-86 (389)
131 1w5s_A Origin recognition comp 96.1 0.0046 1.6E-07 55.2 4.4 56 14-69 33-99 (412)
132 3iev_A GTP-binding protein ERA 96.0 0.015 5.2E-07 50.3 7.5 19 31-49 13-31 (308)
133 1m8p_A Sulfate adenylyltransfe 96.0 0.0061 2.1E-07 57.5 4.9 39 28-66 396-435 (573)
134 2ze6_A Isopentenyl transferase 96.0 0.006 2.1E-07 51.3 4.4 33 29-66 2-34 (253)
135 3t61_A Gluconokinase; PSI-biol 96.0 0.0041 1.4E-07 50.1 3.2 35 28-67 18-52 (202)
136 2axn_A 6-phosphofructo-2-kinas 95.9 0.0074 2.5E-07 56.3 5.3 39 27-65 34-72 (520)
137 1x6v_B Bifunctional 3'-phospho 95.9 0.0071 2.4E-07 57.5 5.2 40 27-66 51-90 (630)
138 4eun_A Thermoresistant glucoki 95.9 0.0065 2.2E-07 48.9 4.3 40 23-67 24-63 (200)
139 2p5t_B PEZT; postsegregational 95.9 0.0054 1.9E-07 51.5 3.8 38 26-66 30-67 (253)
140 3trf_A Shikimate kinase, SK; a 95.9 0.0042 1.4E-07 49.1 3.0 33 28-65 5-37 (185)
141 1tf7_A KAIC; homohexamer, hexa 95.9 0.021 7.1E-07 53.2 8.1 39 28-66 281-319 (525)
142 2h5e_A Peptide chain release f 95.9 0.0091 3.1E-07 55.8 5.5 41 225-266 107-147 (529)
143 1gvn_B Zeta; postsegregational 95.8 0.0058 2E-07 52.5 3.8 37 26-65 31-67 (287)
144 2rhm_A Putative kinase; P-loop 95.8 0.0068 2.3E-07 48.1 3.9 33 28-65 5-37 (193)
145 2wwf_A Thymidilate kinase, put 95.8 0.011 3.6E-07 47.7 5.1 35 29-63 11-45 (212)
146 3nva_A CTP synthase; rossman f 95.8 0.13 4.6E-06 47.5 12.7 43 29-71 4-48 (535)
147 3kb2_A SPBC2 prophage-derived 95.8 0.0066 2.3E-07 47.1 3.5 33 29-66 2-34 (173)
148 2g0t_A Conserved hypothetical 95.7 0.13 4.6E-06 45.2 12.2 37 27-63 169-205 (350)
149 1e6c_A Shikimate kinase; phosp 95.7 0.0061 2.1E-07 47.5 3.1 32 29-65 3-34 (173)
150 3tqc_A Pantothenate kinase; bi 95.7 0.013 4.5E-07 51.1 5.4 41 27-67 91-133 (321)
151 3ld9_A DTMP kinase, thymidylat 95.7 0.013 4.4E-07 48.4 5.1 45 25-69 18-63 (223)
152 3c8u_A Fructokinase; YP_612366 95.6 0.016 5.6E-07 46.9 5.6 42 26-67 20-61 (208)
153 1gtv_A TMK, thymidylate kinase 95.6 0.0039 1.3E-07 50.4 1.9 35 30-64 2-36 (214)
154 1via_A Shikimate kinase; struc 95.6 0.0052 1.8E-07 48.3 2.5 31 30-65 6-36 (175)
155 1nlf_A Regulatory protein REPA 95.6 0.015 5E-07 49.4 5.3 40 28-67 30-79 (279)
156 3foz_A TRNA delta(2)-isopenten 95.5 0.017 5.9E-07 50.0 5.7 38 24-66 6-43 (316)
157 2j9r_A Thymidine kinase; TK1, 95.5 0.022 7.7E-07 46.6 6.0 37 27-63 27-63 (214)
158 3vaa_A Shikimate kinase, SK; s 95.5 0.007 2.4E-07 48.7 3.0 33 28-65 25-57 (199)
159 1knq_A Gluconate kinase; ALFA/ 95.5 0.015 5.2E-07 45.4 4.9 35 28-67 8-42 (175)
160 1g8f_A Sulfate adenylyltransfe 95.5 0.01 3.5E-07 55.1 4.4 39 28-66 395-435 (511)
161 3lw7_A Adenylate kinase relate 95.5 0.0078 2.7E-07 46.6 3.1 27 30-60 3-29 (179)
162 4edh_A DTMP kinase, thymidylat 95.5 0.02 6.8E-07 46.9 5.6 39 29-68 7-45 (213)
163 3n70_A Transport activator; si 95.5 0.0056 1.9E-07 46.7 2.1 54 10-66 8-61 (145)
164 1tev_A UMP-CMP kinase; ploop, 95.5 0.011 3.8E-07 46.8 3.9 33 28-65 3-35 (196)
165 2iyv_A Shikimate kinase, SK; t 95.5 0.0047 1.6E-07 48.8 1.7 31 30-65 4-34 (184)
166 1odf_A YGR205W, hypothetical 3 95.5 0.011 3.9E-07 50.8 4.2 41 26-66 29-72 (290)
167 2vhj_A Ntpase P4, P4; non- hyd 95.4 0.0058 2E-07 53.4 2.3 34 28-64 123-156 (331)
168 1qf9_A UMP/CMP kinase, protein 95.4 0.012 3.9E-07 46.6 4.0 34 27-65 5-38 (194)
169 1l8q_A Chromosomal replication 95.4 0.016 5.4E-07 50.2 5.2 38 28-65 37-74 (324)
170 2chg_A Replication factor C sm 95.4 0.0066 2.3E-07 48.8 2.5 37 30-66 40-78 (226)
171 3d3q_A TRNA delta(2)-isopenten 95.4 0.013 4.6E-07 51.5 4.6 34 29-67 8-41 (340)
172 2r2a_A Uncharacterized protein 95.4 0.011 3.9E-07 47.9 3.7 38 28-65 5-48 (199)
173 1y63_A LMAJ004144AAA protein; 95.4 0.012 4E-07 46.7 3.8 34 28-65 10-43 (184)
174 2v54_A DTMP kinase, thymidylat 95.4 0.01 3.5E-07 47.5 3.5 34 29-64 5-38 (204)
175 3t15_A Ribulose bisphosphate c 95.3 0.012 4.3E-07 50.4 4.1 36 26-64 34-69 (293)
176 1ukz_A Uridylate kinase; trans 95.3 0.011 3.8E-07 47.4 3.6 36 25-65 12-47 (203)
177 1sq5_A Pantothenate kinase; P- 95.3 0.018 6.3E-07 49.8 4.9 42 26-67 78-121 (308)
178 1zp6_A Hypothetical protein AT 95.3 0.014 4.7E-07 46.3 3.9 36 27-65 8-43 (191)
179 2c78_A Elongation factor TU-A; 95.2 0.067 2.3E-06 48.0 8.8 29 29-57 12-40 (405)
180 2bwj_A Adenylate kinase 5; pho 95.2 0.0086 2.9E-07 47.7 2.4 33 28-65 12-44 (199)
181 3e1s_A Exodeoxyribonuclease V, 95.2 0.021 7.3E-07 53.8 5.4 36 28-63 204-239 (574)
182 2cdn_A Adenylate kinase; phosp 95.2 0.016 5.4E-07 46.5 4.0 34 27-65 19-52 (201)
183 2f1r_A Molybdopterin-guanine d 95.1 0.02 6.9E-07 45.2 4.4 39 29-67 3-41 (171)
184 4b3f_X DNA-binding protein smu 95.1 0.022 7.6E-07 54.4 5.4 35 30-64 207-241 (646)
185 1dar_A EF-G, elongation factor 95.1 0.065 2.2E-06 51.7 8.7 40 225-265 102-141 (691)
186 3upu_A ATP-dependent DNA helic 95.1 0.026 9E-07 51.6 5.7 35 30-64 47-82 (459)
187 3crm_A TRNA delta(2)-isopenten 95.0 0.018 6E-07 50.3 4.1 34 28-66 5-38 (323)
188 4fcw_A Chaperone protein CLPB; 95.0 0.028 9.4E-07 48.1 5.2 49 28-76 47-98 (311)
189 1uf9_A TT1252 protein; P-loop, 95.0 0.011 3.9E-07 47.2 2.5 33 28-66 8-40 (203)
190 2if2_A Dephospho-COA kinase; a 94.9 0.011 3.9E-07 47.4 2.4 30 30-65 3-32 (204)
191 3hjn_A DTMP kinase, thymidylat 94.9 0.036 1.2E-06 44.7 5.4 33 31-63 3-35 (197)
192 1zuh_A Shikimate kinase; alpha 94.9 0.018 6.2E-07 44.7 3.5 34 27-65 6-39 (168)
193 4eaq_A DTMP kinase, thymidylat 94.9 0.038 1.3E-06 45.7 5.6 35 28-63 26-60 (229)
194 2ehv_A Hypothetical protein PH 94.9 0.034 1.2E-06 45.8 5.3 40 28-67 30-70 (251)
195 3iij_A Coilin-interacting nucl 94.8 0.017 5.8E-07 45.4 3.2 32 29-65 12-43 (180)
196 1wf3_A GTP-binding protein; GT 94.8 0.11 3.8E-06 44.7 8.6 19 31-49 10-28 (301)
197 1kag_A SKI, shikimate kinase I 94.8 0.011 3.8E-07 46.0 2.1 32 29-65 5-36 (173)
198 2qt1_A Nicotinamide riboside k 94.8 0.015 5.1E-07 46.9 2.9 37 27-67 20-56 (207)
199 3lv8_A DTMP kinase, thymidylat 94.8 0.033 1.1E-06 46.4 5.0 39 29-68 28-67 (236)
200 2c95_A Adenylate kinase 1; tra 94.7 0.019 6.6E-07 45.5 3.3 33 28-65 9-41 (196)
201 3do6_A Formate--tetrahydrofola 94.7 0.044 1.5E-06 49.9 5.8 40 36-77 55-94 (543)
202 2pt5_A Shikimate kinase, SK; a 94.7 0.016 5.5E-07 44.8 2.7 31 30-65 2-32 (168)
203 2xex_A Elongation factor G; GT 94.7 0.12 3.9E-06 49.9 9.1 23 29-51 11-33 (693)
204 3v9p_A DTMP kinase, thymidylat 94.6 0.03 1E-06 46.3 4.4 40 28-68 25-68 (227)
205 3asz_A Uridine kinase; cytidin 94.6 0.032 1.1E-06 45.0 4.4 37 28-67 6-42 (211)
206 3tlx_A Adenylate kinase 2; str 94.6 0.028 9.5E-07 46.8 4.1 34 27-65 28-61 (243)
207 3umf_A Adenylate kinase; rossm 94.6 0.029 1E-06 46.1 4.2 27 26-52 27-53 (217)
208 2vli_A Antibiotic resistance p 94.6 0.013 4.6E-07 45.9 2.0 30 28-60 5-34 (183)
209 3cm0_A Adenylate kinase; ATP-b 94.5 0.032 1.1E-06 43.9 4.2 33 28-65 4-36 (186)
210 2grj_A Dephospho-COA kinase; T 94.5 0.034 1.2E-06 44.7 4.4 36 26-66 10-45 (192)
211 1ltq_A Polynucleotide kinase; 94.5 0.026 8.9E-07 48.2 3.7 34 28-65 2-35 (301)
212 3be4_A Adenylate kinase; malar 94.5 0.021 7.1E-07 46.6 3.0 31 30-65 7-37 (217)
213 4tmk_A Protein (thymidylate ki 94.4 0.043 1.5E-06 44.9 4.8 40 29-69 4-44 (213)
214 3syl_A Protein CBBX; photosynt 94.4 0.045 1.5E-06 46.8 5.1 38 28-65 67-108 (309)
215 2z4s_A Chromosomal replication 94.4 0.036 1.2E-06 50.4 4.6 38 28-65 130-169 (440)
216 1aky_A Adenylate kinase; ATP:A 94.4 0.029 9.8E-07 45.7 3.6 32 29-65 5-36 (220)
217 3a8t_A Adenylate isopentenyltr 94.3 0.032 1.1E-06 49.0 3.9 35 28-67 40-74 (339)
218 2f6r_A COA synthase, bifunctio 94.3 0.03 1E-06 47.7 3.8 33 27-65 74-106 (281)
219 2orv_A Thymidine kinase; TP4A 94.0 0.079 2.7E-06 43.9 5.6 37 27-63 18-54 (234)
220 1zak_A Adenylate kinase; ATP:A 94.0 0.027 9.2E-07 45.9 2.8 32 29-65 6-37 (222)
221 3exa_A TRNA delta(2)-isopenten 94.0 0.048 1.6E-06 47.4 4.4 34 28-66 3-36 (322)
222 3ake_A Cytidylate kinase; CMP 94.0 0.025 8.7E-07 45.2 2.5 31 30-65 4-34 (208)
223 3fb4_A Adenylate kinase; psych 93.9 0.044 1.5E-06 44.3 3.8 30 31-65 3-32 (216)
224 2jeo_A Uridine-cytidine kinase 93.9 0.066 2.3E-06 44.4 5.0 40 27-66 24-68 (245)
225 1zd8_A GTP:AMP phosphotransfer 93.9 0.026 9E-07 46.2 2.4 33 28-65 7-39 (227)
226 1d2n_A N-ethylmaleimide-sensit 93.8 0.059 2E-06 45.3 4.5 37 25-64 61-97 (272)
227 2jaq_A Deoxyguanosine kinase; 93.7 0.044 1.5E-06 43.6 3.5 24 30-53 2-25 (205)
228 1e4v_A Adenylate kinase; trans 93.7 0.043 1.5E-06 44.4 3.5 30 31-65 3-32 (214)
229 2bjv_A PSP operon transcriptio 93.7 0.041 1.4E-06 46.1 3.5 38 30-67 31-68 (265)
230 1ak2_A Adenylate kinase isoenz 93.6 0.051 1.7E-06 44.7 3.8 32 29-65 17-48 (233)
231 4hlc_A DTMP kinase, thymidylat 93.6 0.078 2.7E-06 43.0 4.8 37 29-67 3-39 (205)
232 2xb4_A Adenylate kinase; ATP-b 93.6 0.049 1.7E-06 44.6 3.6 31 30-65 2-32 (223)
233 1w36_D RECD, exodeoxyribonucle 93.6 0.064 2.2E-06 50.9 4.9 35 28-62 164-202 (608)
234 1ofh_A ATP-dependent HSL prote 93.5 0.079 2.7E-06 45.0 5.0 35 29-66 51-85 (310)
235 3aez_A Pantothenate kinase; tr 93.5 0.11 3.7E-06 45.1 5.8 42 26-67 88-131 (312)
236 4ag6_A VIRB4 ATPase, type IV s 93.5 0.087 3E-06 46.9 5.4 35 31-65 38-72 (392)
237 2qz4_A Paraplegin; AAA+, SPG7, 93.4 0.1 3.5E-06 43.2 5.5 36 28-66 39-74 (262)
238 2qor_A Guanylate kinase; phosp 93.4 0.034 1.2E-06 44.7 2.3 25 28-52 12-36 (204)
239 1jjv_A Dephospho-COA kinase; P 93.3 0.07 2.4E-06 42.7 4.1 32 29-66 3-34 (206)
240 1bif_A 6-phosphofructo-2-kinas 93.3 0.085 2.9E-06 48.3 5.1 39 27-65 38-76 (469)
241 3dl0_A Adenylate kinase; phosp 93.3 0.048 1.6E-06 44.1 3.1 30 31-65 3-32 (216)
242 1tue_A Replication protein E1; 93.2 0.054 1.9E-06 44.1 3.1 35 18-52 47-82 (212)
243 1sxj_A Activator 1 95 kDa subu 93.1 0.074 2.5E-06 49.4 4.3 38 28-68 77-114 (516)
244 3eph_A TRNA isopentenyltransfe 93.1 0.1 3.6E-06 46.8 5.1 34 28-66 2-35 (409)
245 3cr8_A Sulfate adenylyltranfer 93.0 0.071 2.4E-06 50.0 4.2 39 28-66 369-408 (552)
246 3ch4_B Pmkase, phosphomevalona 93.0 0.069 2.3E-06 43.3 3.5 27 26-52 9-35 (202)
247 3zvl_A Bifunctional polynucleo 93.0 0.036 1.2E-06 50.1 2.0 39 25-68 255-293 (416)
248 2gk6_A Regulator of nonsense t 93.0 0.1 3.5E-06 49.7 5.3 36 29-64 196-232 (624)
249 1c9k_A COBU, adenosylcobinamid 92.9 0.052 1.8E-06 43.2 2.7 32 31-66 2-33 (180)
250 2a5y_B CED-4; apoptosis; HET: 92.9 0.064 2.2E-06 50.1 3.7 40 27-66 151-194 (549)
251 3pxg_A Negative regulator of g 92.8 0.076 2.6E-06 48.7 3.9 35 31-65 204-245 (468)
252 3tau_A Guanylate kinase, GMP k 92.7 0.07 2.4E-06 43.1 3.2 25 28-52 8-32 (208)
253 1vht_A Dephospho-COA kinase; s 92.7 0.12 4E-06 41.8 4.6 32 28-65 4-35 (218)
254 4dcu_A GTP-binding protein ENG 92.7 0.29 9.8E-06 44.6 7.7 20 30-49 25-44 (456)
255 2bdt_A BH3686; alpha-beta prot 92.7 0.087 3E-06 41.6 3.7 33 29-65 3-35 (189)
256 3h4m_A Proteasome-activating n 92.7 0.081 2.8E-06 44.6 3.7 35 28-65 51-85 (285)
257 1njg_A DNA polymerase III subu 92.6 0.1 3.4E-06 42.1 4.0 29 28-56 45-73 (250)
258 3sr0_A Adenylate kinase; phosp 92.6 0.092 3.1E-06 42.6 3.7 23 30-52 2-24 (206)
259 2r44_A Uncharacterized protein 92.4 0.17 5.8E-06 43.7 5.5 43 31-76 49-91 (331)
260 1vt4_I APAF-1 related killer D 92.3 0.18 6E-06 50.9 6.0 45 26-70 148-195 (1221)
261 2wjy_A Regulator of nonsense t 92.2 0.14 4.8E-06 50.2 5.2 35 29-63 372-407 (800)
262 1um8_A ATP-dependent CLP prote 92.2 0.13 4.3E-06 45.5 4.5 34 30-66 74-107 (376)
263 1z6t_A APAF-1, apoptotic prote 92.2 0.1 3.4E-06 49.0 4.1 42 26-67 145-190 (591)
264 1iqp_A RFCS; clamp loader, ext 92.1 0.057 1.9E-06 46.3 2.0 34 31-64 49-84 (327)
265 1kgd_A CASK, peripheral plasma 92.0 0.093 3.2E-06 41.3 3.1 25 28-52 5-29 (180)
266 3u61_B DNA polymerase accessor 92.0 0.12 4E-06 44.6 4.0 38 26-66 46-83 (324)
267 1lv7_A FTSH; alpha/beta domain 92.0 0.18 6.1E-06 41.9 5.0 33 30-65 47-79 (257)
268 2bbw_A Adenylate kinase 4, AK4 92.0 0.11 3.7E-06 43.0 3.6 25 28-52 27-51 (246)
269 3tr5_A RF-3, peptide chain rel 92.0 0.054 1.9E-06 50.5 1.9 40 225-265 107-146 (528)
270 1w4r_A Thymidine kinase; type 91.9 0.24 8.1E-06 39.9 5.4 37 27-63 19-55 (195)
271 1hqc_A RUVB; extended AAA-ATPa 91.9 0.16 5.6E-06 43.4 4.8 43 29-74 39-81 (324)
272 2elf_A Protein translation elo 91.9 0.33 1.1E-05 43.0 6.8 22 28-49 21-42 (370)
273 1sxj_B Activator 1 37 kDa subu 91.9 0.049 1.7E-06 46.6 1.4 35 31-65 45-81 (323)
274 3bs4_A Uncharacterized protein 91.8 0.24 8.2E-06 41.7 5.6 49 19-67 10-60 (260)
275 2eyu_A Twitching motility prot 91.8 0.24 8.3E-06 41.6 5.6 40 25-64 22-62 (261)
276 1nij_A Hypothetical protein YJ 91.8 0.11 3.9E-06 44.9 3.6 37 28-66 4-40 (318)
277 1cke_A CK, MSSA, protein (cyti 91.8 0.13 4.3E-06 41.7 3.7 31 30-65 7-37 (227)
278 1sxj_C Activator 1 40 kDa subu 91.8 0.073 2.5E-06 46.4 2.4 36 31-66 49-84 (340)
279 2vo1_A CTP synthase 1; pyrimid 91.8 0.36 1.2E-05 40.6 6.4 46 28-73 23-70 (295)
280 2j69_A Bacterial dynamin-like 91.7 0.28 9.5E-06 47.3 6.6 35 26-67 68-102 (695)
281 1xwi_A SKD1 protein; VPS4B, AA 91.7 0.17 5.6E-06 43.9 4.6 36 28-65 45-80 (322)
282 2j41_A Guanylate kinase; GMP, 91.6 0.12 4E-06 41.2 3.3 25 28-52 6-30 (207)
283 3jvv_A Twitching mobility prot 91.6 0.25 8.7E-06 43.6 5.7 44 19-63 115-159 (356)
284 1qvr_A CLPB protein; coiled co 91.6 0.13 4.3E-06 50.9 4.0 36 30-65 193-235 (854)
285 2ewv_A Twitching motility prot 91.4 0.24 8.3E-06 43.9 5.4 39 26-64 134-173 (372)
286 2fna_A Conserved hypothetical 91.2 0.21 7E-06 43.1 4.7 35 29-66 31-65 (357)
287 3e2i_A Thymidine kinase; Zn-bi 91.2 0.31 1E-05 39.9 5.4 40 28-67 28-69 (219)
288 3r20_A Cytidylate kinase; stru 91.2 0.15 5E-06 42.3 3.5 32 29-65 10-41 (233)
289 2xzl_A ATP-dependent helicase 91.1 0.21 7.1E-06 49.0 5.0 37 29-65 376-413 (802)
290 3cf0_A Transitional endoplasmi 91.1 0.18 6.1E-06 43.2 4.1 35 27-64 48-82 (301)
291 3b9p_A CG5977-PA, isoform A; A 91.1 0.21 7.2E-06 42.3 4.5 35 28-65 54-88 (297)
292 3hws_A ATP-dependent CLP prote 91.0 0.19 6.4E-06 44.2 4.2 34 29-65 52-85 (363)
293 1ex7_A Guanylate kinase; subst 90.9 0.1 3.5E-06 41.7 2.2 21 30-50 3-23 (186)
294 1sxj_D Activator 1 41 kDa subu 90.9 0.35 1.2E-05 41.8 5.9 34 31-64 61-97 (353)
295 2ga8_A Hypothetical 39.9 kDa p 90.7 0.18 6.1E-06 44.5 3.8 36 18-53 14-49 (359)
296 3tr0_A Guanylate kinase, GMP k 90.7 0.16 5.5E-06 40.3 3.2 24 29-52 8-31 (205)
297 3eie_A Vacuolar protein sortin 90.7 0.28 9.5E-06 42.4 5.0 34 28-64 51-84 (322)
298 3d8b_A Fidgetin-like protein 1 90.7 0.23 7.8E-06 43.7 4.5 35 28-65 117-151 (357)
299 1ojl_A Transcriptional regulat 90.6 0.13 4.3E-06 44.4 2.6 56 10-67 9-64 (304)
300 2qp9_X Vacuolar protein sortin 90.5 0.25 8.5E-06 43.4 4.6 32 30-64 86-117 (355)
301 1tf7_A KAIC; homohexamer, hexa 90.5 0.69 2.4E-05 42.8 7.8 40 27-66 38-78 (525)
302 2chq_A Replication factor C sm 90.4 0.086 2.9E-06 44.9 1.5 35 31-65 41-77 (319)
303 1p9r_A General secretion pathw 90.4 0.31 1.1E-05 44.0 5.2 46 19-65 159-204 (418)
304 3ney_A 55 kDa erythrocyte memb 90.4 0.19 6.6E-06 40.4 3.5 25 28-52 19-43 (197)
305 1in4_A RUVB, holliday junction 90.4 0.17 5.8E-06 44.0 3.3 24 29-52 52-75 (334)
306 2h92_A Cytidylate kinase; ross 90.2 0.11 3.9E-06 41.9 2.0 32 30-66 5-36 (219)
307 3a00_A Guanylate kinase, GMP k 90.2 0.14 4.8E-06 40.4 2.5 32 29-60 2-34 (186)
308 1e9r_A Conjugal transfer prote 90.1 0.29 9.9E-06 44.1 4.8 39 31-71 56-94 (437)
309 1q3t_A Cytidylate kinase; nucl 90.1 0.23 7.9E-06 40.7 3.8 33 28-65 16-48 (236)
310 3pxi_A Negative regulator of g 90.0 0.38 1.3E-05 46.7 5.9 36 30-65 523-558 (758)
311 2qmh_A HPR kinase/phosphorylas 90.0 0.2 6.8E-06 40.6 3.2 32 28-65 34-65 (205)
312 2ocp_A DGK, deoxyguanosine kin 90.0 0.17 5.8E-06 41.7 2.9 25 29-53 3-27 (241)
313 2dy1_A Elongation factor G; tr 89.9 0.87 3E-05 43.6 8.1 25 28-52 9-33 (665)
314 3tqf_A HPR(Ser) kinase; transf 89.8 0.25 8.7E-06 39.0 3.5 25 30-58 18-42 (181)
315 4b4t_K 26S protease regulatory 89.8 0.38 1.3E-05 43.5 5.2 37 26-65 204-240 (428)
316 3co5_A Putative two-component 89.8 0.053 1.8E-06 41.1 -0.4 40 10-51 11-50 (143)
317 4e22_A Cytidylate kinase; P-lo 89.3 0.22 7.7E-06 41.4 3.2 25 28-52 27-51 (252)
318 2qen_A Walker-type ATPase; unk 89.3 0.26 8.8E-06 42.4 3.7 33 29-66 32-64 (350)
319 3uk6_A RUVB-like 2; hexameric 89.2 0.24 8.1E-06 43.3 3.4 26 29-54 71-96 (368)
320 3pvs_A Replication-associated 89.2 0.21 7.1E-06 45.5 3.1 34 19-52 41-74 (447)
321 2i3b_A HCR-ntpase, human cance 89.2 0.3 1E-05 38.9 3.7 26 31-56 4-29 (189)
322 2gno_A DNA polymerase III, gam 89.1 0.56 1.9E-05 40.3 5.7 48 18-65 8-58 (305)
323 3avx_A Elongation factor TS, e 89.1 3.1 0.0001 42.5 11.5 29 28-56 296-324 (1289)
324 1ye8_A Protein THEP1, hypothet 89.0 0.3 1E-05 38.5 3.5 23 31-53 3-25 (178)
325 3nwj_A ATSK2; P loop, shikimat 89.0 0.22 7.6E-06 41.6 2.9 32 29-65 49-80 (250)
326 3sjy_A Translation initiation 89.0 0.69 2.4E-05 41.3 6.4 19 31-49 11-29 (403)
327 1lvg_A Guanylate kinase, GMP k 89.0 0.24 8E-06 39.6 2.9 25 29-53 5-29 (198)
328 3hdt_A Putative kinase; struct 88.9 0.33 1.1E-05 39.8 3.8 34 28-66 14-47 (223)
329 1qvr_A CLPB protein; coiled co 88.8 0.4 1.4E-05 47.3 5.0 38 29-66 589-626 (854)
330 2npi_A Protein CLP1; CLP1-PCF1 88.6 0.16 5.5E-06 46.5 1.9 44 29-72 139-183 (460)
331 3pfi_A Holliday junction ATP-d 88.6 0.42 1.4E-05 41.2 4.5 35 29-66 56-90 (338)
332 3pxi_A Negative regulator of g 88.5 0.31 1.1E-05 47.4 3.9 24 31-54 204-227 (758)
333 2zan_A Vacuolar protein sortin 88.3 0.39 1.3E-05 43.6 4.3 36 28-65 167-202 (444)
334 2c9o_A RUVB-like 1; hexameric 88.3 0.29 1E-05 44.5 3.5 25 29-53 64-88 (456)
335 1s96_A Guanylate kinase, GMP k 88.3 0.29 9.9E-06 40.0 3.1 26 28-53 16-41 (219)
336 1jr3_A DNA polymerase III subu 88.2 0.37 1.3E-05 42.0 3.9 27 28-54 38-64 (373)
337 3sfz_A APAF-1, apoptotic pepti 88.1 0.37 1.3E-05 48.9 4.4 42 26-67 145-190 (1249)
338 1ixz_A ATP-dependent metallopr 87.9 0.29 1E-05 40.4 2.9 30 31-63 52-81 (254)
339 2r62_A Cell division protease 87.6 0.19 6.6E-06 41.8 1.6 22 31-52 47-68 (268)
340 2vp4_A Deoxynucleoside kinase; 87.6 0.36 1.2E-05 39.5 3.2 35 27-65 19-53 (230)
341 1sxj_E Activator 1 40 kDa subu 87.5 0.3 1E-05 42.4 2.9 23 31-53 39-61 (354)
342 2b6h_A ADP-ribosylation factor 87.4 0.53 1.8E-05 37.0 4.1 33 16-49 18-50 (192)
343 3fdi_A Uncharacterized protein 87.4 0.3 1E-05 39.2 2.6 32 29-65 7-38 (201)
344 3tmk_A Thymidylate kinase; pho 87.3 0.41 1.4E-05 39.1 3.4 33 28-63 5-37 (216)
345 1r6b_X CLPA protein; AAA+, N-t 87.3 0.6 2.1E-05 45.2 5.1 28 28-55 207-234 (758)
346 1p5z_B DCK, deoxycytidine kina 87.3 0.14 4.7E-06 42.9 0.5 26 27-52 23-48 (263)
347 1g41_A Heat shock protein HSLU 87.2 0.56 1.9E-05 42.6 4.5 31 31-64 53-83 (444)
348 1a5t_A Delta prime, HOLB; zinc 87.2 0.49 1.7E-05 41.0 4.1 30 25-54 21-50 (334)
349 1r6b_X CLPA protein; AAA+, N-t 87.1 0.73 2.5E-05 44.6 5.6 33 30-65 490-522 (758)
350 1htw_A HI0065; nucleotide-bind 87.0 0.48 1.6E-05 36.6 3.5 31 26-56 31-61 (158)
351 2ged_A SR-beta, signal recogni 86.9 0.41 1.4E-05 37.3 3.1 20 30-49 50-69 (193)
352 3vfd_A Spastin; ATPase, microt 86.8 0.64 2.2E-05 41.2 4.6 35 28-65 148-182 (389)
353 1dek_A Deoxynucleoside monopho 86.7 0.46 1.6E-05 39.5 3.4 28 29-59 2-29 (241)
354 2x8a_A Nuclear valosin-contain 86.6 0.38 1.3E-05 40.6 3.0 32 31-65 47-78 (274)
355 1fzq_A ADP-ribosylation factor 86.6 0.51 1.7E-05 36.6 3.5 23 26-49 15-37 (181)
356 1svi_A GTP-binding protein YSX 86.6 0.53 1.8E-05 36.7 3.6 30 19-49 15-44 (195)
357 3m6a_A ATP-dependent protease 86.5 0.75 2.6E-05 42.9 5.1 35 28-65 108-142 (543)
358 4b4t_M 26S protease regulatory 86.5 0.5 1.7E-05 42.8 3.8 37 26-65 213-249 (434)
359 1svm_A Large T antigen; AAA+ f 86.5 0.5 1.7E-05 42.0 3.8 28 25-52 166-193 (377)
360 4b4t_L 26S protease subunit RP 86.4 0.51 1.7E-05 42.8 3.8 36 27-65 214-249 (437)
361 1ksh_A ARF-like protein 2; sma 86.3 0.53 1.8E-05 36.4 3.5 30 19-49 9-39 (186)
362 4gp7_A Metallophosphoesterase; 86.1 0.37 1.3E-05 37.4 2.4 20 28-47 9-28 (171)
363 4fn5_A EF-G 1, elongation fact 86.1 4.8 0.00016 38.7 10.7 41 224-265 109-149 (709)
364 3uf0_A Short-chain dehydrogena 86.1 0.63 2.1E-05 39.1 4.0 45 14-63 18-62 (273)
365 1iy2_A ATP-dependent metallopr 86.0 0.43 1.5E-05 40.1 2.9 30 31-63 76-105 (278)
366 2atv_A RERG, RAS-like estrogen 86.0 0.59 2E-05 36.6 3.7 24 26-50 27-50 (196)
367 4ehx_A Tetraacyldisaccharide 4 86.0 0.89 3E-05 39.3 5.0 34 28-63 37-71 (315)
368 3rsc_A CALG2; TDP, enediyne, s 85.9 5.6 0.00019 34.8 10.5 39 25-64 18-56 (415)
369 1znw_A Guanylate kinase, GMP k 85.7 0.5 1.7E-05 37.8 3.1 25 28-52 20-44 (207)
370 3ak4_A NADH-dependent quinucli 85.5 0.76 2.6E-05 38.1 4.2 36 26-66 11-46 (263)
371 1nrj_B SR-beta, signal recogni 85.3 0.7 2.4E-05 36.8 3.8 20 31-50 15-34 (218)
372 3lnc_A Guanylate kinase, GMP k 85.3 0.35 1.2E-05 39.4 2.0 25 28-52 27-52 (231)
373 3b6e_A Interferon-induced heli 85.1 0.78 2.7E-05 36.3 4.0 32 31-62 51-88 (216)
374 4b4t_J 26S protease regulatory 85.1 0.54 1.8E-05 42.2 3.2 35 28-65 182-216 (405)
375 3c5c_A RAS-like protein 12; GD 85.0 0.44 1.5E-05 37.2 2.4 19 31-49 24-42 (187)
376 1z6g_A Guanylate kinase; struc 84.9 0.46 1.6E-05 38.5 2.5 31 28-61 23-53 (218)
377 3kta_A Chromosome segregation 84.9 0.53 1.8E-05 36.6 2.8 24 30-53 28-51 (182)
378 1moz_A ARL1, ADP-ribosylation 84.8 0.55 1.9E-05 36.1 2.9 28 21-49 11-39 (183)
379 3lfu_A DNA helicase II; SF1 he 84.7 0.78 2.7E-05 43.3 4.4 35 31-65 25-63 (647)
380 1of1_A Thymidine kinase; trans 84.6 0.84 2.9E-05 40.5 4.2 29 28-56 49-77 (376)
381 1m2o_B GTP-binding protein SAR 84.4 0.59 2E-05 36.6 2.9 23 26-49 22-44 (190)
382 4b4t_H 26S protease regulatory 84.4 0.65 2.2E-05 42.4 3.5 37 26-65 241-277 (467)
383 1zj6_A ADP-ribosylation factor 84.4 0.57 2E-05 36.3 2.8 27 22-49 11-37 (187)
384 3con_A GTPase NRAS; structural 84.1 0.48 1.6E-05 36.8 2.3 20 31-50 24-43 (190)
385 1e2k_A Thymidine kinase; trans 84.1 0.73 2.5E-05 40.2 3.6 28 29-56 5-32 (331)
386 2ce2_X GTPase HRAS; signaling 83.8 0.59 2E-05 34.9 2.6 20 29-49 5-24 (166)
387 3orf_A Dihydropteridine reduct 83.8 1.1 3.6E-05 37.0 4.4 36 27-67 22-57 (251)
388 2dyk_A GTP-binding protein; GT 83.7 0.83 2.9E-05 34.1 3.4 19 31-49 4-22 (161)
389 3un1_A Probable oxidoreductase 83.6 0.95 3.2E-05 37.6 4.0 43 20-67 21-63 (260)
390 1g8p_A Magnesium-chelatase 38 83.6 0.39 1.3E-05 41.5 1.6 23 31-53 48-70 (350)
391 1rif_A DAR protein, DNA helica 83.5 0.99 3.4E-05 37.9 4.1 32 32-63 132-164 (282)
392 2wji_A Ferrous iron transport 83.4 0.95 3.3E-05 34.4 3.7 19 31-49 6-24 (165)
393 1osn_A Thymidine kinase, VZV-T 83.4 0.38 1.3E-05 42.1 1.5 38 28-67 12-50 (341)
394 4gzl_A RAS-related C3 botulinu 83.4 0.73 2.5E-05 36.5 3.1 34 15-49 17-51 (204)
395 3pqc_A Probable GTP-binding pr 83.3 0.59 2E-05 36.2 2.5 21 28-49 24-44 (195)
396 1w78_A FOLC bifunctional prote 83.3 0.97 3.3E-05 40.5 4.2 28 37-64 56-83 (422)
397 3hu3_A Transitional endoplasmi 83.0 0.94 3.2E-05 41.7 4.0 35 28-65 238-272 (489)
398 3gem_A Short chain dehydrogena 83.0 0.8 2.7E-05 38.1 3.3 37 26-67 26-62 (260)
399 2ywe_A GTP-binding protein LEP 82.8 4.9 0.00017 37.9 8.9 21 31-51 9-29 (600)
400 1upt_A ARL1, ADP-ribosylation 82.8 1 3.5E-05 34.0 3.6 21 28-49 8-28 (171)
401 4b4t_I 26S protease regulatory 82.7 0.93 3.2E-05 41.0 3.7 36 27-65 215-250 (437)
402 4i1u_A Dephospho-COA kinase; s 82.6 1 3.5E-05 36.6 3.6 29 31-65 12-40 (210)
403 2fz4_A DNA repair protein RAD2 82.5 1 3.6E-05 36.9 3.8 30 31-63 111-140 (237)
404 2v9p_A Replication protein E1; 82.5 1 3.6E-05 38.7 3.9 31 26-59 124-154 (305)
405 3ice_A Transcription terminati 82.2 1.5 5E-05 39.3 4.8 42 25-67 172-215 (422)
406 1z2a_A RAS-related protein RAB 82.1 0.87 3E-05 34.2 3.0 21 28-49 6-26 (168)
407 3ged_A Short-chain dehydrogena 82.0 1.3 4.3E-05 36.9 4.1 34 28-66 3-36 (247)
408 1f2t_A RAD50 ABC-ATPase; DNA d 81.9 1.2 4.1E-05 33.7 3.7 25 29-53 24-48 (149)
409 2l8b_A Protein TRAI, DNA helic 81.8 1.6 5.5E-05 34.6 4.4 42 26-67 49-91 (189)
410 1knx_A Probable HPR(Ser) kinas 81.7 0.85 2.9E-05 39.4 3.0 26 29-58 148-173 (312)
411 4dhe_A Probable GTP-binding pr 81.6 0.83 2.8E-05 36.5 2.8 24 25-49 27-50 (223)
412 3v2g_A 3-oxoacyl-[acyl-carrier 81.2 1.5 5.1E-05 36.7 4.4 38 25-67 29-66 (271)
413 3op4_A 3-oxoacyl-[acyl-carrier 81.2 1.1 3.7E-05 36.9 3.4 36 26-66 8-43 (248)
414 2ce7_A Cell division protein F 81.1 1.7 5.9E-05 39.7 5.0 31 31-64 52-82 (476)
415 2wjg_A FEOB, ferrous iron tran 80.9 1.3 4.5E-05 34.1 3.7 19 31-49 10-28 (188)
416 2yv5_A YJEQ protein; hydrolase 80.9 0.93 3.2E-05 38.8 3.0 31 19-49 156-186 (302)
417 2zej_A Dardarin, leucine-rich 80.8 0.82 2.8E-05 35.4 2.5 20 31-50 5-24 (184)
418 3gmt_A Adenylate kinase; ssgci 80.8 0.98 3.4E-05 37.2 3.0 24 28-52 9-32 (230)
419 1u0j_A DNA replication protein 80.8 1.5 5E-05 37.0 4.1 34 19-52 93-128 (267)
420 1p6x_A Thymidine kinase; P-loo 80.7 1 3.5E-05 39.2 3.2 37 29-67 8-44 (334)
421 3oes_A GTPase rhebl1; small GT 80.7 1.1 3.7E-05 35.2 3.2 23 27-50 24-46 (201)
422 3bwd_D RAC-like GTP-binding pr 80.7 1.3 4.4E-05 33.8 3.5 21 28-49 9-29 (182)
423 2wsb_A Galactitol dehydrogenas 80.5 1.7 6E-05 35.4 4.5 35 27-66 11-45 (254)
424 3nrs_A Dihydrofolate:folylpoly 80.5 1.3 4.5E-05 39.9 4.0 29 36-64 58-86 (437)
425 3j25_A Tetracycline resistance 80.4 0.91 3.1E-05 43.2 3.0 41 223-264 90-130 (638)
426 3uxy_A Short-chain dehydrogena 80.3 1.1 3.7E-05 37.4 3.1 37 26-67 27-63 (266)
427 3ppi_A 3-hydroxyacyl-COA dehyd 80.2 1.6 5.5E-05 36.4 4.3 38 24-66 27-64 (281)
428 2p5s_A RAS and EF-hand domain 80.2 1.3 4.6E-05 34.6 3.6 24 25-49 26-49 (199)
429 4imr_A 3-oxoacyl-(acyl-carrier 80.1 1.7 5.9E-05 36.4 4.4 41 23-68 29-69 (275)
430 4egf_A L-xylulose reductase; s 80.0 1.3 4.4E-05 36.8 3.6 40 22-66 15-54 (266)
431 3k1j_A LON protease, ATP-depen 79.9 1 3.5E-05 42.5 3.2 39 29-67 61-99 (604)
432 3qks_A DNA double-strand break 79.7 1.5 5.1E-05 35.0 3.7 26 29-54 24-49 (203)
433 3l6e_A Oxidoreductase, short-c 79.6 1.7 5.8E-05 35.4 4.1 34 28-66 4-37 (235)
434 3r1i_A Short-chain type dehydr 79.6 2.3 7.9E-05 35.6 5.0 40 23-67 28-67 (276)
435 3reg_A RHO-like small GTPase; 79.5 1.5 5.1E-05 34.1 3.6 19 31-49 26-44 (194)
436 1u8z_A RAS-related protein RAL 79.4 1.2 4.2E-05 33.2 3.0 19 31-49 7-25 (168)
437 4g81_D Putative hexonate dehyd 79.4 0.97 3.3E-05 37.8 2.5 40 22-66 4-43 (255)
438 4ibo_A Gluconate dehydrogenase 79.2 1.1 3.6E-05 37.6 2.7 39 23-66 22-60 (271)
439 3vtz_A Glucose 1-dehydrogenase 79.1 1.5 5.2E-05 36.5 3.7 39 25-68 12-50 (269)
440 2dhr_A FTSH; AAA+ protein, hex 79.1 1.8 6.3E-05 39.8 4.5 31 31-64 67-97 (499)
441 2erx_A GTP-binding protein DI- 79.1 1.3 4.3E-05 33.4 2.9 19 31-49 6-24 (172)
442 2fv8_A H6, RHO-related GTP-bin 78.9 0.94 3.2E-05 35.8 2.3 20 31-50 28-47 (207)
443 3cf2_A TER ATPase, transitiona 78.7 1.2 4.1E-05 43.5 3.3 35 27-64 237-271 (806)
444 2atx_A Small GTP binding prote 78.6 0.9 3.1E-05 35.4 2.0 19 32-50 22-40 (194)
445 1dhr_A Dihydropteridine reduct 78.3 2.1 7.3E-05 34.8 4.4 37 27-68 7-43 (241)
446 2gj8_A MNME, tRNA modification 78.2 1.4 4.9E-05 33.7 3.1 19 31-49 7-25 (172)
447 3p19_A BFPVVD8, putative blue 78.1 2.2 7.6E-05 35.5 4.4 33 28-65 17-49 (266)
448 1ooe_A Dihydropteridine reduct 78.1 2 7E-05 34.7 4.1 36 28-68 4-39 (236)
449 3tpc_A Short chain alcohol deh 78.0 2.3 7.9E-05 35.0 4.5 36 27-67 7-42 (257)
450 2nzj_A GTP-binding protein REM 77.9 1.4 4.9E-05 33.3 2.9 19 31-49 7-25 (175)
451 2ae2_A Protein (tropinone redu 77.9 2.2 7.4E-05 35.2 4.3 35 27-66 9-43 (260)
452 2lkc_A Translation initiation 77.8 1.7 6E-05 32.9 3.4 21 28-49 9-29 (178)
453 3tzq_B Short-chain type dehydr 77.7 2.3 8E-05 35.3 4.5 36 27-67 11-46 (271)
454 1oix_A RAS-related protein RAB 77.6 1.7 5.7E-05 34.0 3.3 21 30-50 31-51 (191)
455 3sx2_A Putative 3-ketoacyl-(ac 77.5 2.2 7.4E-05 35.5 4.2 35 27-66 13-47 (278)
456 3h7a_A Short chain dehydrogena 77.5 2.3 7.8E-05 35.0 4.3 36 27-67 7-42 (252)
457 3rwb_A TPLDH, pyridoxal 4-dehy 77.3 2 7E-05 35.2 3.9 35 27-66 6-40 (247)
458 3guy_A Short-chain dehydrogena 77.3 1.9 6.6E-05 34.7 3.8 34 28-66 2-35 (230)
459 1jbw_A Folylpolyglutamate synt 77.3 2.1 7E-05 38.5 4.2 28 37-64 46-73 (428)
460 2dtx_A Glucose 1-dehydrogenase 77.2 2.6 9E-05 34.9 4.6 37 27-68 8-44 (264)
461 3i1j_A Oxidoreductase, short c 77.2 1.7 5.8E-05 35.4 3.4 35 27-66 14-48 (247)
462 3pxx_A Carveol dehydrogenase; 77.2 2.1 7.3E-05 35.6 4.1 35 27-66 10-44 (287)
463 1z08_A RAS-related protein RAB 77.2 1.5 5.2E-05 32.9 2.9 19 31-49 9-27 (170)
464 3v8b_A Putative dehydrogenase, 77.1 2.3 7.7E-05 35.8 4.2 39 23-66 24-62 (283)
465 2fh5_B SR-beta, signal recogni 77.1 1.5 5.2E-05 34.7 3.0 20 31-50 10-29 (214)
466 4e6p_A Probable sorbitol dehyd 77.1 2.3 7.8E-05 35.0 4.2 35 27-66 8-42 (259)
467 3o38_A Short chain dehydrogena 77.0 2.1 7.3E-05 35.3 4.0 36 27-67 22-58 (266)
468 2fwm_X 2,3-dihydro-2,3-dihydro 77.0 2.6 8.9E-05 34.5 4.5 35 28-67 8-42 (250)
469 3f1l_A Uncharacterized oxidore 77.0 2.3 8E-05 34.9 4.2 35 27-66 12-46 (252)
470 3qiv_A Short-chain dehydrogena 77.0 2.2 7.6E-05 34.8 4.1 35 27-66 9-43 (253)
471 2f9l_A RAB11B, member RAS onco 77.0 1.5 5.3E-05 34.3 3.0 20 31-50 8-27 (199)
472 3v2h_A D-beta-hydroxybutyrate 77.0 2 6.9E-05 36.0 3.9 35 27-66 25-59 (281)
473 3mc3_A DSRE/DSRF-like family p 76.9 5 0.00017 29.7 5.7 41 26-66 14-56 (134)
474 1ypw_A Transitional endoplasmi 76.9 1.6 5.6E-05 42.7 3.7 34 28-64 238-271 (806)
475 1kao_A RAP2A; GTP-binding prot 76.9 1.6 5.5E-05 32.5 2.9 20 31-50 6-25 (167)
476 2gza_A Type IV secretion syste 76.8 0.75 2.6E-05 40.5 1.1 34 29-63 176-209 (361)
477 4eso_A Putative oxidoreductase 76.7 2.3 7.9E-05 35.0 4.1 35 27-66 8-42 (255)
478 1lw7_A Transcriptional regulat 76.6 1.7 5.9E-05 38.0 3.5 25 29-53 171-195 (365)
479 3gvc_A Oxidoreductase, probabl 76.6 1.9 6.3E-05 36.2 3.5 35 27-66 29-63 (277)
480 3q85_A GTP-binding protein REM 76.6 1.7 5.7E-05 32.7 3.0 19 31-49 5-23 (169)
481 1z0j_A RAB-22, RAS-related pro 76.5 1.6 5.6E-05 32.6 2.9 19 31-49 9-27 (170)
482 3e8x_A Putative NAD-dependent 76.5 2.1 7.2E-05 34.5 3.7 36 27-67 21-56 (236)
483 2x77_A ADP-ribosylation factor 76.4 1.3 4.5E-05 34.2 2.4 23 25-48 20-42 (189)
484 1pui_A ENGB, probable GTP-bind 76.4 1.6 5.3E-05 34.4 2.9 23 27-49 25-47 (210)
485 2v6i_A RNA helicase; membrane, 76.4 1.8 6E-05 39.0 3.5 35 29-63 3-38 (431)
486 2onk_A Molybdate/tungstate ABC 76.4 1.7 5.7E-05 35.9 3.1 25 29-53 25-49 (240)
487 3ew7_A LMO0794 protein; Q8Y8U8 76.3 2.4 8.1E-05 33.5 4.0 34 28-66 1-34 (221)
488 2ekp_A 2-deoxy-D-gluconate 3-d 76.3 2.4 8.2E-05 34.4 4.1 36 28-68 3-38 (239)
489 3b85_A Phosphate starvation-in 76.3 1.4 4.8E-05 35.5 2.5 29 29-57 23-51 (208)
490 2oca_A DAR protein, ATP-depend 76.2 2.5 8.5E-05 38.5 4.6 33 31-63 131-164 (510)
491 1r2q_A RAS-related protein RAB 76.2 1.7 5.9E-05 32.5 3.0 20 31-50 9-28 (170)
492 1wms_A RAB-9, RAB9, RAS-relate 76.1 1.7 5.8E-05 32.9 2.9 19 31-49 10-28 (177)
493 2cxx_A Probable GTP-binding pr 76.1 1.4 4.8E-05 33.8 2.5 19 31-49 4-22 (190)
494 2d1y_A Hypothetical protein TT 76.1 2.7 9.3E-05 34.5 4.4 37 27-68 6-42 (256)
495 3nyw_A Putative oxidoreductase 76.1 2.2 7.6E-05 35.0 3.8 35 27-66 7-41 (250)
496 1f6b_A SAR1; gtpases, N-termin 76.0 1.8 6.1E-05 34.0 3.1 24 25-49 23-46 (198)
497 3q72_A GTP-binding protein RAD 76.0 1.4 4.8E-05 33.0 2.4 18 31-48 5-22 (166)
498 2ew8_A (S)-1-phenylethanol deh 76.0 2.6 8.8E-05 34.5 4.2 34 28-66 8-41 (249)
499 1r8s_A ADP-ribosylation factor 76.0 1.8 6E-05 32.4 3.0 20 31-50 3-22 (164)
500 3l77_A Short-chain alcohol deh 76.0 2.7 9.2E-05 33.9 4.3 34 28-66 3-36 (235)
No 1
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=100.00 E-value=8.9e-43 Score=310.40 Aligned_cols=259 Identities=55% Similarity=0.899 Sum_probs=186.4
Q ss_pred ccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCcee
Q 023886 14 IPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYA 93 (276)
Q Consensus 14 ~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~ 93 (276)
.++++++++++++.++|+|+||||||||||+|+|||.++|+.|+||+|||+||+++++.+|+.+....++.+.+.+++..
T Consensus 2 ~l~~~l~~~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~~l~~~l~~~~~~~~~~v~~~~~L~~ 81 (334)
T 3iqw_A 2 SMEPTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFGKEARLVEGFDNLYA 81 (334)
T ss_dssp CCCSSSHHHHHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCHHHHHHTSCCCSSCEECTTCSSEEE
T ss_pred CccccHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCCChhHHhccccCCCceeecCCCCcee
Confidence 57889999999999999999999999999999999999999999999999999999999999887766676666788888
Q ss_pred eecCCcccc-cccC---------ccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHH
Q 023886 94 MEVDPSVEE-ETGS---------TEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPS 163 (276)
Q Consensus 94 ~~~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~ 163 (276)
.++++.... ++.. ..++ .+..++....|+..+...+.++.+.+.+.+||||||||||++++++++.+|.
T Consensus 82 ~~id~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lp~ 160 (334)
T 3iqw_A 82 MEIDPNGSMQDLLAGQTGDGDAGMGGV-GVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPT 160 (334)
T ss_dssp EECCC---------------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHHHTHHH
T ss_pred eecCHHHHHHHHHHHhhcccccccccc-hhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHH
Confidence 888877655 2211 0223 3334444556899998888888888876689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhhhhhcCCCC-CcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHH
Q 023886 164 TLEKGLDKMMSLKNKFGGMINQMTRLFGIDD-EFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE 242 (276)
Q Consensus 164 ~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~ 242 (276)
.+.+|++++....+++.++.+++...+|..+ ..+.+.++++++..++.++++++.+.|+..+++++|++|+.+++.|++
T Consensus 161 ~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~ 240 (334)
T 3iqw_A 161 VLEKALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETE 240 (334)
T ss_dssp HC-----------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHH
Confidence 9999999999998888888888777665200 123345668889999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCcCeEEEccccCCCCCCCCC
Q 023886 243 RLVQELTKFEIDTHNIIINQVLYDDEGMHCN 273 (276)
Q Consensus 243 ~~~~~l~~~~~~~~g~vvN~~~~~~~~~~~~ 273 (276)
++++.|++.|+++.|+|+|+++.+++..+|+
T Consensus 241 r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~ 271 (334)
T 3iqw_A 241 RMIQELANYGIDTHCIVVNQLLFPKPGSDCE 271 (334)
T ss_dssp HHHHHHHHTTCCEEEEEEEEECCCCTTCCCH
T ss_pred HHHHHHHHCCCCccEEEECCCcCcccCCcCH
Confidence 9999999999999999999999655555553
No 2
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=100.00 E-value=1.7e-41 Score=303.56 Aligned_cols=253 Identities=49% Similarity=0.842 Sum_probs=151.7
Q ss_pred ccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHH--hCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCc
Q 023886 14 IPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNL 91 (276)
Q Consensus 14 ~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la--~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l 91 (276)
.++++|+++++++.++|+|++|||||||||+|+|||.++| +.|+||+|||+|++++++.+||.+....++.+.+.+++
T Consensus 4 ~l~~~L~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~~~~~~~~~~~~~v~~~~~L 83 (348)
T 3io3_A 4 ELEPTLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFCQKFGKDARKVEGLPNL 83 (348)
T ss_dssp SCCSSSHHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHHHHTSCCCSSCEEETTEEEE
T ss_pred ccchhHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHHHhccccCCCceeccCCCCc
Confidence 6889999999999999999999999999999999999999 89999999999999999999998877777777666788
Q ss_pred eeeecCCcccc-cccC---------ccCcchHHHHHhccCCCchHHHHHHHHHHHhccC------------CCcEEEEcC
Q 023886 92 YAMEVDPSVEE-ETGS---------TEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTM------------DYSCIVFDT 149 (276)
Q Consensus 92 ~~~~~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~------------~yD~IiiD~ 149 (276)
...++++.... ++.. ..++..+...+....|+..+...+.++++.+++. +||||||||
T Consensus 84 ~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDt 163 (348)
T 3io3_A 84 SCMEIDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDT 163 (348)
T ss_dssp EEEECCC-----------------------------------------------------------------CCEEEEEC
T ss_pred eEEeeCHHHHHHHHHHHHHhhcccccccHhHHhHHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcC
Confidence 88888877665 2211 1134444445555668888888888888888754 799999999
Q ss_pred CCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEE
Q 023886 150 APTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVC 229 (276)
Q Consensus 150 pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 229 (276)
||++++++++.+|..+++|++++....+++.+++ ++...+ +.+.++..+...++.++++++.+.|+..+++++
T Consensus 164 pPtg~tLrlL~lP~~~~~~l~~~~~~~~~~~p~~-~~~~~~------~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vl 236 (348)
T 3io3_A 164 APTGHTLRFLQLPSTLEKLLSKFKDLSGKLGPML-SMMGGG------QQQDIFEKLNEVQKNVSEVNEQFTNPELTTFIC 236 (348)
T ss_dssp SSHHHHHHHTC----------------------------------------------------CHHHHHHTCTTTEEEEE
T ss_pred CCchHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH-HhcccC------chHHHHHHHHHHHHHHHHHHHHHhCcCceEEEE
Confidence 9999999999999999999999988877776665 443332 245677888999999999999999999999999
Q ss_pred EecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCCC-CCCCCC
Q 023886 230 VCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDD-EGMHCN 273 (276)
Q Consensus 230 V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~~-~~~~~~ 273 (276)
|++|+.+++.++.++++.|+++|+++.|+|+||++++. +..+|+
T Consensus 237 Vt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~ 281 (348)
T 3io3_A 237 VCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCK 281 (348)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CH
T ss_pred EecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCH
Confidence 99999999999999999999999999999999999876 334453
No 3
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=100.00 E-value=9.1e-40 Score=293.40 Aligned_cols=262 Identities=39% Similarity=0.671 Sum_probs=208.6
Q ss_pred chhhhccccccchhhhhc-CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCccee
Q 023886 7 DQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLV 85 (276)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~ 85 (276)
+-.|+|+.+++++..+.. .++++|+|+|+||||||||+|+|||.++|+.|+||||||+|++++++..|+.+....++.+
T Consensus 4 ~~~E~~r~lrt~~~~~~~~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v 83 (349)
T 3ug7_A 4 KIKDSINSLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFGHEPTKV 83 (349)
T ss_dssp ------CTTHHHHHHHHHSSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTCHHHHHHCSCCCSSCEEC
T ss_pred HHHHHHHHHhhhHHHhhcccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCCCCCcCcccc
Confidence 456899999999998875 4567778999999999999999999999999999999999999999999999877666666
Q ss_pred ccCCCceeeecCCcccc-ccc----C-ccCc----chHHH--HHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCch
Q 023886 86 NGFSNLYAMEVDPSVEE-ETG----S-TEGM----DSLFS--ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTG 153 (276)
Q Consensus 86 ~~~~~l~~~~~~~~~~~-~~~----~-~~~~----~~~~~--~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~ 153 (276)
.+..++...++++...+ ++. . ...+ ..+.. +.....|+..+...+.++.+.+++.+||||||||||++
T Consensus 84 ~g~~~l~~~~id~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VIiDtpPt~ 163 (349)
T 3ug7_A 84 KGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTG 163 (349)
T ss_dssp TTCSSEEEEECCHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEEECSCCCT
T ss_pred ccccceeeeccCHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCCh
Confidence 66778887777766544 110 0 0000 11111 12335688888888888888887668999999999999
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhhc---CCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Q 023886 154 HTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLF---GIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCV 230 (276)
Q Consensus 154 ~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V 230 (276)
++++++.+|..+.+|++++++...++......+..+. |....++.+.+++.+...++.++++++.+.|+..+++++|
T Consensus 164 ~tlrlL~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV 243 (349)
T 3ug7_A 164 HTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLV 243 (349)
T ss_dssp TGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEE
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 9999999999999999999998887776666554432 2112344567778999999999999999999999999999
Q ss_pred ecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCCCC
Q 023886 231 CIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDE 268 (276)
Q Consensus 231 ~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~~~ 268 (276)
++|+..++.++.++++.+++.|+++.|+|+|++.+..+
T Consensus 244 ~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~ 281 (349)
T 3ug7_A 244 VIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDV 281 (349)
T ss_dssp ECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCC
T ss_pred ECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccC
Confidence 99999999999999999999999999999999988754
No 4
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-39 Score=286.72 Aligned_cols=254 Identities=58% Similarity=0.984 Sum_probs=198.8
Q ss_pred hccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCC
Q 023886 11 ELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSN 90 (276)
Q Consensus 11 ~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~ 90 (276)
+|+.++++|+.+.+++.++|+|+||||||||||+|+|||.++|+.|+||++||+|++++++..|+.+....+....+..+
T Consensus 2 ~~r~lr~~l~~~~~~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~~~l~~~l~~~~~~~~~~~~g~~~ 81 (329)
T 2woo_A 2 SFDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTKFGKDARKVPGFDN 81 (329)
T ss_dssp -----CCSTHHHHHCTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTTCHHHHHHSSCCCSSCEECTTCSS
T ss_pred CcchhhccHHHHhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCcCHHHHhCCcCCCCCeeccCCCC
Confidence 58899999999998888999999999999999999999999999999999999999999999999876544544456677
Q ss_pred ceeeecCCcccc-cc----cCc-c--CcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhH
Q 023886 91 LYAMEVDPSVEE-ET----GST-E--GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFP 162 (276)
Q Consensus 91 l~~~~~~~~~~~-~~----~~~-~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip 162 (276)
+...++++...+ ++ ... . -+......+....|+..+...+.++.+.+++.+||||||||||++++++++.+|
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPtg~~l~lL~~p 161 (329)
T 2woo_A 82 LSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFP 161 (329)
T ss_dssp EEEEECCHHHHHHHHHHTC--------CCHHHHHHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSSSCTTTGGGHH
T ss_pred eeEEecCHHHHHHHHHHHHhhhhHHHHhhHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCchHHHHHHHHH
Confidence 776666655433 11 110 0 011111233556688888888899998888558999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHH
Q 023886 163 STLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE 242 (276)
Q Consensus 163 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~ 242 (276)
..+++|++++.++.+++..+...+...+|. .++.+.+...++..++.++++++.+.|+..+++++|++|+..++.++.
T Consensus 162 ~~~~~~l~~l~~~~~~~~~~~~~l~~~~g~--~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~ 239 (329)
T 2woo_A 162 TVLEKALGKLGGLSSRFGPMINQMGSIMGV--NANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETE 239 (329)
T ss_dssp HHHHHHHHHHHTSCSSCHHHHHHHHHHHC-------CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHH
Confidence 999999999987766665555554444442 222233456788889999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCcCeEEEccccCC
Q 023886 243 RLVQELTKFEIDTHNIIINQVLYD 266 (276)
Q Consensus 243 ~~~~~l~~~~~~~~g~vvN~~~~~ 266 (276)
++++.|++.|+++.|+|+|++..+
T Consensus 240 ~~~~~L~~~gi~v~gvVvN~~~~p 263 (329)
T 2woo_A 240 RMIQELTSYEIDTHNIVVNQLLLD 263 (329)
T ss_dssp HHHHHHHHHTCEEEEEEEEEECCC
T ss_pred HHHHHHHHCCCCCCEEEEeCCcCc
Confidence 999999999999999999999833
No 5
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=3.6e-37 Score=273.99 Aligned_cols=248 Identities=40% Similarity=0.694 Sum_probs=191.2
Q ss_pred hhhhhcC-Cc-eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeec
Q 023886 19 VRNILEQ-DS-LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEV 96 (276)
Q Consensus 19 l~~~~~~-~~-~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~ 96 (276)
|+..+.. ++ ++|+|+|+||||||||+|+|||.++|+.|+|||+||+|++++++..|+.+....+..+ .+++....+
T Consensus 3 i~~~l~~~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~~~~~v--~~~l~~~~~ 80 (324)
T 3zq6_A 3 FKDLFKFNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTPTKI--TENLYAVEI 80 (324)
T ss_dssp GGGGCCCBTTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTSCCCSSCEEE--ETTEEEEEC
T ss_pred hhHhhcCCCCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCCcCHHHHhCCcCCCCCccC--CCCceeecc
Confidence 4444432 33 6888999999999999999999999999999999999999999999998765444332 356666666
Q ss_pred CCcccc-c----ccC------ccCcchHHHH--HhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHH
Q 023886 97 DPSVEE-E----TGS------TEGMDSLFSE--LANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPS 163 (276)
Q Consensus 97 ~~~~~~-~----~~~------~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~ 163 (276)
++...+ + +.. ..++..+... .....|+..+...+.++.+.+++.+||||||||||++++++++.+|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~ 160 (324)
T 3zq6_A 81 DPEVAMEEYQAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPE 160 (324)
T ss_dssp CHHHHHHHHHHHC---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHH
Confidence 665443 1 100 0111222211 23356788888888888887776689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhhhhhcCCC-CCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHH
Q 023886 164 TLEKGLDKMMSLKNKFGGMINQMTRLFGID-DEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETE 242 (276)
Q Consensus 164 ~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~ 242 (276)
.+.+|++++++...+.......+..++... ...+.+.+++.+...++.++++++.+.|+..+++++|++|+..++.++.
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~ 240 (324)
T 3zq6_A 161 IMDSWVGKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESE 240 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHH
Confidence 999999999998887776655554432210 0011146678889999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCcCeEEEccccCCCC
Q 023886 243 RLVQELTKFEIDTHNIIINQVLYDDE 268 (276)
Q Consensus 243 ~~~~~l~~~~~~~~g~vvN~~~~~~~ 268 (276)
++++.|++.|+++.|+|+|++.+...
T Consensus 241 ~~~~~l~~~gi~v~gvV~N~~~~~~~ 266 (324)
T 3zq6_A 241 RAMKALEKYSIHADGVIVNQVLPEES 266 (324)
T ss_dssp HHHHHHHHTTCCEEEEEEEEECCSCC
T ss_pred HHHHHHHHCCCCccEEEEcCCccccC
Confidence 99999999999999999999988753
No 6
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=100.00 E-value=1.2e-37 Score=279.85 Aligned_cols=246 Identities=48% Similarity=0.844 Sum_probs=190.5
Q ss_pred cccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHH--hCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCce
Q 023886 15 PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLY 92 (276)
Q Consensus 15 ~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la--~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~ 92 (276)
+.++|+++++++.++|+|+||||||||||+|+|||.+|| +.|+||+|||+|++++++..||.+....++.+.++.++.
T Consensus 5 ~~~~l~~l~~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~~~l~~~lg~~~~~~~~~v~gl~~l~ 84 (354)
T 2woj_A 5 VEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKFGKDARKVTGMNNLS 84 (354)
T ss_dssp CCSSCHHHHTCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCCHHHHHTSCCCSSCEECTTCSSEE
T ss_pred cCccHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHhCCCCCCCceeecCCCceE
Confidence 557788888888889999999999999999999999999 899999999999999999999998766666666777888
Q ss_pred eeecCCcccc-cc----cCc----------cCcc-----hHHHHHhccCCCchHHHHHHHHHHHhccC------CCcEEE
Q 023886 93 AMEVDPSVEE-ET----GST----------EGMD-----SLFSELANAIPGIDEAMSFAEMLKLVQTM------DYSCIV 146 (276)
Q Consensus 93 ~~~~~~~~~~-~~----~~~----------~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~~l~~~------~yD~Ii 146 (276)
..++++...+ ++ ... .++. ....++....|+..+...|.++++.+++. +|||||
T Consensus 85 ~~~id~~~~l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~II 164 (354)
T 2woj_A 85 CMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVI 164 (354)
T ss_dssp EEECCHHHHHHHHHTC--------------------CCSSHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEE
T ss_pred EEecCHHHHHHHHHHHHHhhcccccccchhhhhhhccchhHHHHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEE
Confidence 7777765443 21 110 0111 22244555678888888999999988752 699999
Q ss_pred EcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeE
Q 023886 147 FDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTT 226 (276)
Q Consensus 147 iD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (276)
|||||++++++++.+|..+++|++++.+..+.+.+++..+..+ + ...++..+...++.++++++.+.++..+.
T Consensus 165 iDtpPtG~tLrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~-~------~~~~~~~l~~~~~~~~~~~~~L~d~~~~~ 237 (354)
T 2woj_A 165 FDTAPTGHTLRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGA-G------NVDISGKLNELKANVETIRQQFTDPDLTT 237 (354)
T ss_dssp EECCCHHHHHHHHTHHHHHHHHHHCC----------------------------CHHHHHHHHHHHHHHHHHHTCTTTEE
T ss_pred ECCCCchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C------hHHHHHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 9999999999999999999999999887777665544332221 1 12356788889999999999999999999
Q ss_pred EEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc-CCC
Q 023886 227 FVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL-YDD 267 (276)
Q Consensus 227 ~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~-~~~ 267 (276)
+++|++|+.+++.++.++++.|++.|+++.|+|+|++. +..
T Consensus 238 ~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~~~~~ 279 (354)
T 2woj_A 238 FVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAEN 279 (354)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCC-
T ss_pred EEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCCCccc
Confidence 99999999999999999999999999999999999998 544
No 7
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=100.00 E-value=1.4e-36 Score=273.47 Aligned_cols=230 Identities=19% Similarity=0.268 Sum_probs=176.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccc-c---
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-E--- 103 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~--- 103 (276)
++|++++|||||||||+|+|||..+|+.|+|||+||+ |+++++..|+.+....++.+ .+++...++++.... +
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~~l~~~~~~~~~~~~~~v--~~~L~~~eid~~~~~~~~~~ 78 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEPVLPLLLEQTLTPDPQQI--APNLEVVQFQSSVLLERNWE 78 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCSHHHHHHTSCCCSSCEEE--ETTEEEEECCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCCChHHhhCCCCCCCcccc--cccccccccCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999 99999999998765554443 367888877765443 1
Q ss_pred --------ccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHH
Q 023886 104 --------TGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSL 175 (276)
Q Consensus 104 --------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~ 175 (276)
.....++..+..+.....|++++...+.++.+.+++.+||||||||||++++++++.+|..+.+|+++++++
T Consensus 79 ~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~l~~~l~~l~~~ 158 (374)
T 3igf_A 79 EVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSWYVRRFRQL 158 (374)
T ss_dssp HHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHHHHHHHHHHHHH
Confidence 111223333444455667899998888888888776789999999999999999999999999999998777
Q ss_pred HHHH--------hhhHhhhhh-hcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHH
Q 023886 176 KNKF--------GGMINQMTR-LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246 (276)
Q Consensus 176 ~~~~--------~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~ 246 (276)
.++. .+.+.++.. ..|. .++.+.+++.+...++.++++++.+.|+..+++++|++|+.+++.|+.++++
T Consensus 159 ~~~~~~g~~~~~~~~~~p~~~~~~~~--~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~sl~ea~r~~~ 236 (374)
T 3igf_A 159 FVNSDLGKTIAESPLIQPLISSFFNV--NWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVSVRYLWG 236 (374)
T ss_dssp C-------------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHHHHHHHHHHH
T ss_pred HhhhccccccccchhhhhhhhhhccC--CCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccHHHHHHHHHH
Confidence 6662 333444432 2332 3445667788889999999999999999999999999999999999999999
Q ss_pred HHhhCCCCcCeEEEcc
Q 023886 247 ELTKFEIDTHNIIINQ 262 (276)
Q Consensus 247 ~l~~~~~~~~g~vvN~ 262 (276)
.+++.|+++.|+|+||
T Consensus 237 ~L~~~gi~v~gvVvN~ 252 (374)
T 3igf_A 237 SAQQIGLTIGGVIQVS 252 (374)
T ss_dssp HHHHHTCCEEEEEECC
T ss_pred HHHHcCCCccEEEEcC
Confidence 9999999999999999
No 8
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.95 E-value=2.1e-28 Score=233.82 Aligned_cols=220 Identities=32% Similarity=0.465 Sum_probs=154.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccc-cc
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEE-ET 104 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~ 104 (276)
.+++++|++|||||||||+|+|||.++|+.|+|||+||+|++++++..|+.+....+..+.+..++...++++.... ++
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~~~l~~~l~~~~~~~~~~v~~~~~l~~~~~d~~~~~~~~ 85 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQY 85 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTTSCCCSSCEECTTSTTEEEEECCHHHHHHHH
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCCcCHHHHhCCcccCCCceeccchhhhhccCCHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999877655555555567777666654332 10
Q ss_pred -----cCccCcc------hHHHHHhccCCCchH---HHHHHHHHH--HhccCCCcEEEEcCCCchhHHHhhhhHHHHHHH
Q 023886 105 -----GSTEGMD------SLFSELANAIPGIDE---AMSFAEMLK--LVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKG 168 (276)
Q Consensus 105 -----~~~~~~~------~~~~~~~~~~~~~~~---~~~l~~~l~--~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~ 168 (276)
....++. .+...+.. ++..+ ...+.++++ .++. +||||||||||+++.++++.+|..+.++
T Consensus 86 ~~~~~~~~~~~lp~~~~~~~~~~l~~--~~~~e~~~~~~~~~ll~~~~l~~-~yD~VIiDt~P~~~~lrll~lP~~~~~~ 162 (589)
T 1ihu_A 86 RARIVDPIKGVLPDDVVSSINEQLSG--ACTTEIAAFDEFTGLLTDASLLT-RFDHIIFDTAPTGHTIRLLQLPGAWSSF 162 (589)
T ss_dssp HHHHHGGGTTTSCHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHCTTHHH-HCSEEEESSCCCHHHHHHHHCGGGGTCC
T ss_pred HHHHHHHHHHhcchhhHHHHHHHhcc--cchHHHHHHHHHHHHHhchhhcc-cCCEEEECCCCchhHHHHHHhHHHHHHH
Confidence 0001110 01111110 11112 234556666 4554 7999999999999999999999877655
Q ss_pred HHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHH
Q 023886 169 LDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248 (276)
Q Consensus 169 l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l 248 (276)
+.+...- ...+.+ ..|. ...++.+.++.+.+.|+..+.+++|++|+..++.++.++++.|
T Consensus 163 l~~~~~~----~~~l~~---~~~l-------------~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L 222 (589)
T 1ihu_A 163 IDSNPEG----ASCLGP---MAGL-------------EKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLEL 222 (589)
T ss_dssp C----------CCCCGG---GGGC-------------CSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHhhcc----ccccch---hhhh-------------hHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHH
Confidence 5443110 000111 1111 1123455677888889888899999999999999999999999
Q ss_pred hhCCCCcCeEEEccccCCCC
Q 023886 249 TKFEIDTHNIIINQVLYDDE 268 (276)
Q Consensus 249 ~~~~~~~~g~vvN~~~~~~~ 268 (276)
++.|+++.|+|+|++.+..+
T Consensus 223 ~~~g~~~~gvVlN~v~~~~~ 242 (589)
T 1ihu_A 223 AAIGLKNQYLVINGVLPKTE 242 (589)
T ss_dssp HHHTCCCEEEEEEEECCGGG
T ss_pred HhCCCCCCEEEEcCCcCccc
Confidence 99999999999999987654
No 9
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.95 E-value=2.6e-27 Score=206.75 Aligned_cols=192 Identities=15% Similarity=0.153 Sum_probs=134.1
Q ss_pred chhhhccccccchhhhh-cCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcce
Q 023886 7 DQDQELEIPEGSVRNIL-EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPTL 84 (276)
Q Consensus 7 ~~~~~~~~~~~~l~~~~-~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~~ 84 (276)
+..|+|+.+|++|.... +.+++.|+|+|+|||+||||+|+|||..||+.|+||||||+|++ ++++..|+.+... .+
T Consensus 71 ~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~--gl 148 (286)
T 3la6_A 71 LAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVN--GL 148 (286)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTT--CH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCC--CH
Confidence 35789999999998864 44556777999999999999999999999999999999999997 6799999876432 11
Q ss_pred eccCC---Ccee-eecCCcccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhh
Q 023886 85 VNGFS---NLYA-MEVDPSVEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLL 159 (276)
Q Consensus 85 ~~~~~---~l~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~ 159 (276)
.+.+. .+.. ........+++ +....... +.++.. ...|.++++.+++ +||||||||||.+...+..
T Consensus 149 ~~~l~~~~~~~~~i~~~~~~~l~vl~~g~~~~~-~~ell~-------~~~l~~ll~~l~~-~yD~VIIDtpp~~~~~da~ 219 (286)
T 3la6_A 149 SEILIGQGDITTAAKPTSIAKFDLIPRGQVPPN-PSELLM-------SERFAELVNWASK-NYDLVLIDTPPILAVTDAA 219 (286)
T ss_dssp HHHHHTSSCTTTTCEECSSTTEEEECCCSCCSC-HHHHHT-------SHHHHHHHHHHHH-HCSEEEEECCCTTTCTHHH
T ss_pred HHHccCCCCHHHheeccCCCCEEEEeCCCCCCC-HHHHhc-------hHHHHHHHHHHHh-CCCEEEEcCCCCcchHHHH
Confidence 11000 0000 00000011111 11111111 111111 2478889999987 8999999999974422111
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHH
Q 023886 160 QFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLY 239 (276)
Q Consensus 160 ~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ 239 (276)
.+ ....+.+++|+.++.++..
T Consensus 220 ~l-----------------------------------------------------------~~~aD~vllVv~~~~~~~~ 240 (286)
T 3la6_A 220 IV-----------------------------------------------------------GRHVGTTLMVARYAVNTLK 240 (286)
T ss_dssp HH-----------------------------------------------------------TTTCSEEEEEEETTTSBHH
T ss_pred HH-----------------------------------------------------------HHHCCeEEEEEeCCCCcHH
Confidence 11 1235779999999999999
Q ss_pred HHHHHHHHHhhCCCCcCeEEEccccCCCC
Q 023886 240 ETERLVQELTKFEIDTHNIIINQVLYDDE 268 (276)
Q Consensus 240 ea~~~~~~l~~~~~~~~g~vvN~~~~~~~ 268 (276)
++.++.+.+++.+.++.|+|+|++.+...
T Consensus 241 ~~~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 241 EVETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 99999999999999999999999976553
No 10
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.94 E-value=2.7e-26 Score=198.85 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=130.2
Q ss_pred cchhhhccccccchhhhhc-CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC-CChhHHhccccCCCcc
Q 023886 6 QDQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA-HNLSDAFQQRFTKTPT 83 (276)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~-~~l~~~l~~~~~~~~~ 83 (276)
.+..|+|+.+|++|..... ++++.|+|+|.|||+||||+|+|||..||+.|+||||||+|++ ++++..|+..... .
T Consensus 60 ~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~--g 137 (271)
T 3bfv_A 60 SPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNE--G 137 (271)
T ss_dssp SHHHHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSS--S
T ss_pred CHHHHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCC--C
Confidence 3457899999999988754 4445666999999999999999999999999999999999987 5788888875431 1
Q ss_pred eeccCC---Ccee-eecCCcccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHh
Q 023886 84 LVNGFS---NLYA-MEVDPSVEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRL 158 (276)
Q Consensus 84 ~~~~~~---~l~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~ 158 (276)
+.+.+. .+.. ........+++ +....... +.++.. ...+.++++.+++ +||||||||||.+.....
T Consensus 138 l~~~L~~~~~l~~~i~~~~~~~l~vl~~g~~~~~-~~ell~-------~~~l~~ll~~l~~-~yD~VIIDtpp~~~~~d~ 208 (271)
T 3bfv_A 138 LSSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPN-PSELIT-------SRAFANLYDTLLM-NYNFVIIDTPPVNTVTDA 208 (271)
T ss_dssp HHHHHTTSSCHHHHEEECSSTTEEEECCCSCCSC-HHHHHT-------SHHHHHHHHHHHH-HCSEEEEECCCTTTCSHH
T ss_pred HHHHhCCCCCHHHcEEeCCCCCEEEEECCCCCCC-HHHHhC-------hHHHHHHHHHHHh-CCCEEEEeCCCCchHHHH
Confidence 111110 0000 00000011111 11111111 111111 1367888999986 899999999997442211
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccH
Q 023886 159 LQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSL 238 (276)
Q Consensus 159 ~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~ 238 (276)
..+. ...+.+++|+.++..++
T Consensus 209 ~~l~-----------------------------------------------------------~~aD~vilVv~~~~~~~ 229 (271)
T 3bfv_A 209 QLFS-----------------------------------------------------------KFTGNVVYVVNSENNNK 229 (271)
T ss_dssp HHHH-----------------------------------------------------------HHHCEEEEEEETTSCCH
T ss_pred HHHH-----------------------------------------------------------HHCCEEEEEEeCCCCcH
Confidence 1110 01256899999999999
Q ss_pred HHHHHHHHHHhhCCCCcCeEEEccccCCCC
Q 023886 239 YETERLVQELTKFEIDTHNIIINQVLYDDE 268 (276)
Q Consensus 239 ~ea~~~~~~l~~~~~~~~g~vvN~~~~~~~ 268 (276)
.++.++.+.+++.++++.|+|+|++.+...
T Consensus 230 ~~~~~~~~~l~~~~~~~~GvVlN~~~~~~~ 259 (271)
T 3bfv_A 230 DEVKKGKELIEATGAKLLGVVLNRMPKDKS 259 (271)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEEEEECC---
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCcCCCC
Confidence 999999999999999999999999976543
No 11
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.93 E-value=4.1e-26 Score=200.48 Aligned_cols=191 Identities=17% Similarity=0.138 Sum_probs=131.2
Q ss_pred chhhhccccccchhhhhc-CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcce
Q 023886 7 DQDQELEIPEGSVRNILE-QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTL 84 (276)
Q Consensus 7 ~~~~~~~~~~~~l~~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~ 84 (276)
+..|+|+.++++|..... .+++.|+|+|.|||+||||+|+|||..||+.|+||||||+|+ +++++.+|+..... .+
T Consensus 83 ~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~--gl 160 (299)
T 3cio_A 83 SAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEH--GL 160 (299)
T ss_dssp HHHHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSS--SH
T ss_pred HHHHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCC--CH
Confidence 346899999999987754 444666699999999999999999999999999999999999 58899999875431 11
Q ss_pred eccCCC---cee-eecCCcccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhh
Q 023886 85 VNGFSN---LYA-MEVDPSVEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLL 159 (276)
Q Consensus 85 ~~~~~~---l~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~ 159 (276)
.+.+.+ +.. ........+++ +....... +.++.. ...+.++++.+++ +||||||||||.+...+..
T Consensus 161 ~~~L~~~~~l~~~i~~~~~~~l~vl~~g~~~~~-~~ell~-------~~~l~~ll~~l~~-~yD~VIIDtpp~~~~~d~~ 231 (299)
T 3cio_A 161 SEYLAGKDELNKVIQHFGKGGFDVITRGQVPPN-PSELLM-------RDRMRQLLEWAND-HYDLVIVDTPPMLAVSDAA 231 (299)
T ss_dssp HHHHTTSSCHHHHCEEETTTTEEEECCCSCCSC-HHHHHT-------SHHHHHHHHHHHH-HCSEEEEECCCTTTCTHHH
T ss_pred HHHCcCCCCHHHhhhccCCCCEEEEECCCCCCC-HHHHhC-------HHHHHHHHHHHHh-CCCEEEEcCCCCchhHHHH
Confidence 111100 000 00000011111 11111111 111111 2467888999986 8999999999974321111
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHH
Q 023886 160 QFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLY 239 (276)
Q Consensus 160 ~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ 239 (276)
.+ ....+.+++|+.++..++.
T Consensus 232 ~l-----------------------------------------------------------~~~ad~vilV~~~~~~~~~ 252 (299)
T 3cio_A 232 VV-----------------------------------------------------------GRSVGTSLLVARFGLNTAK 252 (299)
T ss_dssp HH-----------------------------------------------------------GGGCSEEEEEEETTTSCTT
T ss_pred HH-----------------------------------------------------------HHHCCEEEEEEcCCCChHH
Confidence 00 0123678999999999999
Q ss_pred HHHHHHHHHhhCCCCcCeEEEccccCCC
Q 023886 240 ETERLVQELTKFEIDTHNIIINQVLYDD 267 (276)
Q Consensus 240 ea~~~~~~l~~~~~~~~g~vvN~~~~~~ 267 (276)
++.+..+.+++.++++.|+|+|++.+..
T Consensus 253 ~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 253 EVSLSMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp HHHHHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCCccCC
Confidence 9999999999999999999999997653
No 12
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.92 E-value=7.6e-26 Score=192.71 Aligned_cols=176 Identities=15% Similarity=0.142 Sum_probs=114.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceec--cCCCceeeecC------Cc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVN--GFSNLYAMEVD------PS 99 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~--~~~~l~~~~~~------~~ 99 (276)
|+|+| |+||||||||+|+|||.+||++|+||++||+|+|++++.+||........... .+.++...... ..
T Consensus 1 mkI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (254)
T 3kjh_A 1 MKLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILN 79 (254)
T ss_dssp CEEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTTSCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSS
T ss_pred CEEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcChHHHhCCCcccccccccchhHHHHHHhhccCCcccccC
Confidence 46778 89999999999999999999999999999999999999999875432100000 00000000000 00
Q ss_pred ccc-cccCc-----cCcch-HHHHHh-ccCCCc--hHHHHHHHHHHHh-ccCCCcEEEEcCCCchhHHHhhhhHHHHHHH
Q 023886 100 VEE-ETGST-----EGMDS-LFSELA-NAIPGI--DEAMSFAEMLKLV-QTMDYSCIVFDTAPTGHTLRLLQFPSTLEKG 168 (276)
Q Consensus 100 ~~~-~~~~~-----~~~~~-~~~~~~-~~~~~~--~~~~~l~~~l~~l-~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~ 168 (276)
..+ .+++. .++.. ++.... ....+. .+...+.++++.+ ++ +||||||||||+++..+..++
T Consensus 80 ~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~yD~viiD~pp~~~~~~~~~l------- 151 (254)
T 3kjh_A 80 PKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLD-KKEAVVMDMGAGIEHLTRGTA------- 151 (254)
T ss_dssp CCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHT-CCSEEEEEECTTCTTCCHHHH-------
T ss_pred CchhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccC-CCCEEEEeCCCcccHHHHHHH-------
Confidence 000 01111 01111 100000 000011 1224688999998 75 999999999998654332222
Q ss_pred HHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHH
Q 023886 169 LDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248 (276)
Q Consensus 169 l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l 248 (276)
...+.+++|+.|+..++..+.++.+.+
T Consensus 152 -----------------------------------------------------~~aD~viiv~~~~~~s~~~~~~~~~~~ 178 (254)
T 3kjh_A 152 -----------------------------------------------------KAVDMMIAVIEPNLNSIKTGLNIEKLA 178 (254)
T ss_dssp -----------------------------------------------------TTCSEEEEEECSSHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------HHCCEEEEecCCCHHHHHHHHHHHHHH
Confidence 124679999999999999999999999
Q ss_pred hhCCCCcCeEEEccccC
Q 023886 249 TKFEIDTHNIIINQVLY 265 (276)
Q Consensus 249 ~~~~~~~~g~vvN~~~~ 265 (276)
++.+++..++|+|++.+
T Consensus 179 ~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 179 GDLGIKKVRYVINKVRN 195 (254)
T ss_dssp HHHTCSCEEEEEEEECC
T ss_pred HHcCCccEEEEEeCCCC
Confidence 99999888999999864
No 13
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.92 E-value=7.3e-25 Score=209.27 Aligned_cols=207 Identities=27% Similarity=0.403 Sum_probs=128.2
Q ss_pred chhhhhc---CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceee
Q 023886 18 SVRNILE---QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAM 94 (276)
Q Consensus 18 ~l~~~~~---~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~ 94 (276)
.++.+++ ....+++++++|||+||||+|+|||..+++.|+||++||+||+++++..|+... .++...
T Consensus 314 ~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~~l~~~l~~~~----------~~l~~~ 383 (589)
T 1ihu_A 314 SLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGSL----------NNLQVS 383 (589)
T ss_dssp CHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC---------------------CCEEEE
T ss_pred hhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcccHhHHhcccC----------CCceee
Confidence 3444443 345678899999999999999999999999999999999999999999987632 122222
Q ss_pred ecCCcccc-----cc-cC-ccCcch--HHH-HHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHH
Q 023886 95 EVDPSVEE-----ET-GS-TEGMDS--LFS-ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPST 164 (276)
Q Consensus 95 ~~~~~~~~-----~~-~~-~~~~~~--~~~-~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~ 164 (276)
.+++.... .+ .. ...+.. ... ......|+..+...+.++.+.+++.+||||||||||++++++++.+|..
T Consensus 384 ~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~ 463 (589)
T 1ihu_A 384 RIDPHEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGA 463 (589)
T ss_dssp ECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC--
T ss_pred ecchHHHHHHHHHHHHHhhhccCChhhHHHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHH
Confidence 22221111 00 00 011111 000 0011224444555666666666544799999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHH
Q 023886 165 LEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL 244 (276)
Q Consensus 165 ~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~ 244 (276)
+.+.+.+... ... .+.++...+.|+..+.+++|++|+..++.++.++
T Consensus 464 ~~~~~~~~~~----------~~~-----------------------~~~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~ 510 (589)
T 1ihu_A 464 YHREIAKKMG----------EKG-----------------------HFTTPMMLLQDPERTKVLLVTLPETTPVLEAANL 510 (589)
T ss_dssp -------------------------------------------------CCHHHHHCTTTEEEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHhcc----------cch-----------------------HHHHHHHHhcCCCCCEEEEEeCCCccHHHHHHHH
Confidence 5432221100 000 1122334556788899999999999999999999
Q ss_pred HHHHhhCCCCcCeEEEccccCCC
Q 023886 245 VQELTKFEIDTHNIIINQVLYDD 267 (276)
Q Consensus 245 ~~~l~~~~~~~~g~vvN~~~~~~ 267 (276)
++.|++.|+++.|+|+|++.+..
T Consensus 511 ~~~l~~~g~~~~gvVvN~~~~~~ 533 (589)
T 1ihu_A 511 QADLERAGIHPWGWIINNSLSIA 533 (589)
T ss_dssp HHHHHHTTCCCCEEEEEEESTTS
T ss_pred HHHHHHCCCCCCEEEEeCCcCCC
Confidence 99999999999999999998764
No 14
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.92 E-value=9.8e-26 Score=191.72 Aligned_cols=171 Identities=18% Similarity=0.246 Sum_probs=115.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCC-CChhHHhccccCCCcceeccCCCceeee--------
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA-HNLSDAFQQRFTKTPTLVNGFSNLYAME-------- 95 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~-------- 95 (276)
.++.|+|+|+||||||||+|+|||.+||+. |+||++||+|+| ++++.+|+.... ..++.+.+.+.....
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~ 81 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTH-SQDLADISNASDRLDKSLLDTMV 81 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCC-SCCHHHHHHTGGGCCHHHHHHHS
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCC-CCCHHHHHhhHhhhhHHHHHHHh
Confidence 345677999999999999999999999998 999999999999 999999853211 111111111000000
Q ss_pred cCCcccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHH
Q 023886 96 VDPSVEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMS 174 (276)
Q Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~ 174 (276)
......+++ +......... .. ....+.++++.+++ +||||||||||+.+......+
T Consensus 82 ~~~~~~l~~l~~~~~~~~~~----~~-----~~~~l~~~l~~l~~-~yD~viiD~p~~~~~~~~~~l------------- 138 (245)
T 3ea0_A 82 QHISPSLDLIPSPATFEKIV----NI-----EPERVSDLIHIAAS-FYDYIIVDFGASIDHVGVWVL------------- 138 (245)
T ss_dssp EEEETTEEEECCCSSHHHHH----HC-----CHHHHHHHHHHHHH-HCSEEEEEEESSCCTTHHHHG-------------
T ss_pred EecCCCeEEEcCCCChHhhh----cC-----CHHHHHHHHHHHHh-hCCEEEEeCCCCCchHHHHHH-------------
Confidence 000001111 2222211111 00 12367888888886 899999999998654322221
Q ss_pred HHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCC--
Q 023886 175 LKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE-- 252 (276)
Q Consensus 175 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~-- 252 (276)
...+.+++|+.|+..++..+.++.+.+++.+
T Consensus 139 -----------------------------------------------~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~ 171 (245)
T 3ea0_A 139 -----------------------------------------------EHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKP 171 (245)
T ss_dssp -----------------------------------------------GGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSC
T ss_pred -----------------------------------------------HHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCC
Confidence 1236789999999999999999999999887
Q ss_pred CCcCeEEEccccCCC
Q 023886 253 IDTHNIIINQVLYDD 267 (276)
Q Consensus 253 ~~~~g~vvN~~~~~~ 267 (276)
....|+|+|++.+..
T Consensus 172 ~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 172 ISRIEIILNRADTNS 186 (245)
T ss_dssp CSCEEEEEESTTSCT
T ss_pred ccceEEEEecCCCCC
Confidence 566899999997654
No 15
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.91 E-value=7.6e-24 Score=182.48 Aligned_cols=176 Identities=18% Similarity=0.160 Sum_probs=113.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC-ChhHHhccccCCCcceeccCCCceeeecCCcccccc
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEET 104 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 104 (276)
.++.|+|+|+||||||||+|+|||.+||+.|+||++||+|+|. +++.+|+..... . ......+.... .....+++
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~--~-~~~~~~~~~~~-~~~~~l~v 92 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNAR--I-AVSAEGLEPVL-TQKYGIKV 92 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCC--C-EEETTEEECEE-CTTTCCEE
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCcc--c-cccccCccccc-cCCCCeEE
Confidence 3467789999999999999999999999999999999999997 578888865431 0 00001110000 00011111
Q ss_pred -cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhH
Q 023886 105 -GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI 183 (276)
Q Consensus 105 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~ 183 (276)
+....+......+ ...+......+.++++.++..+||||||||||+.+.......
T Consensus 93 lp~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~---------------------- 148 (262)
T 2ph1_A 93 MSMQFLLPKENTPV--IWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVM---------------------- 148 (262)
T ss_dssp ECGGGGSTTCSSCC--CCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHH----------------------
T ss_pred EeccccCCCcccch--hhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHH----------------------
Confidence 1111110000000 001112345677888877623899999999998542110000
Q ss_pred hhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccc
Q 023886 184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQV 263 (276)
Q Consensus 184 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~ 263 (276)
.. ...+.+++|+.|+..++..+.+.++.+++.++++.|+|+|++
T Consensus 149 ---------------------------------~~---~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~ 192 (262)
T 2ph1_A 149 ---------------------------------QD---AKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMS 192 (262)
T ss_dssp ---------------------------------HH---HCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred ---------------------------------hh---ccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 00 013668999999999999999999999999999999999998
Q ss_pred cC
Q 023886 264 LY 265 (276)
Q Consensus 264 ~~ 265 (276)
.+
T Consensus 193 ~~ 194 (262)
T 2ph1_A 193 YF 194 (262)
T ss_dssp CE
T ss_pred cc
Confidence 53
No 16
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.91 E-value=5.4e-24 Score=183.68 Aligned_cols=182 Identities=16% Similarity=0.164 Sum_probs=111.7
Q ss_pred cccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCC------CcceeccC
Q 023886 15 PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTK------TPTLVNGF 88 (276)
Q Consensus 15 ~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~------~~~~~~~~ 88 (276)
.+.....+-.++++.|+|+|+||||||||+|+|||.+|| +|+||++||+|+|++++.+++..... ...+.+.+
T Consensus 15 ~~~~~~~~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 93 (267)
T 3k9g_A 15 QTQGPGSMDNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEIL 93 (267)
T ss_dssp -----------CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHH
T ss_pred hhcCcccCCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHh
Confidence 344455555566677779999999999999999999999 99999999999999988887543210 11111100
Q ss_pred CC---ceeeecCCcccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHH
Q 023886 89 SN---LYAMEVDPSVEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPST 164 (276)
Q Consensus 89 ~~---l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~ 164 (276)
.+ +...-......+++ +....+....... .+ .....+.++++.++. +||||||||||+.+.....++
T Consensus 94 ~~~~~~~~~i~~~~~~l~~lp~~~~~~~~~~~~---~~--~~~~~l~~~l~~l~~-~yD~viiD~pp~~~~~~~~~l--- 164 (267)
T 3k9g_A 94 KENVDIDSTIINVDNNLDLIPSYLTLHNFSEDK---IE--HKDFLLKTSLGTLYY-KYDYIVIDTNPSLDVTLKNAL--- 164 (267)
T ss_dssp TTSSCGGGGCEEEETTEEEECCCGGGGGTTTCC---CT--TGGGHHHHHHHTTCT-TCSEEEEEECSSCSHHHHHHH---
T ss_pred cCCCCHHHhhccCCCCEEEEeCChHHHHHHHhh---hh--hHHHHHHHHHHHhhc-CCCEEEEECcCCccHHHHHHH---
Confidence 00 00000000001111 2221111111000 00 123467888998886 899999999998665433332
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHH
Q 023886 165 LEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL 244 (276)
Q Consensus 165 ~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~ 244 (276)
. ..+.+++|+.|+..++..+.++
T Consensus 165 --------------------------------------------------------~-~aD~vivv~~~~~~s~~~~~~~ 187 (267)
T 3k9g_A 165 --------------------------------------------------------L-CSDYVIIPMTAEKWAVESLDLF 187 (267)
T ss_dssp --------------------------------------------------------T-TCSEEEEEEESCTTHHHHHHHH
T ss_pred --------------------------------------------------------H-HCCeEEEEeCCChHHHHHHHHH
Confidence 0 2467999999999999999999
Q ss_pred HHHHhhCCCCc-CeEEEccc
Q 023886 245 VQELTKFEIDT-HNIIINQV 263 (276)
Q Consensus 245 ~~~l~~~~~~~-~g~vvN~~ 263 (276)
.+.+++.+... .++|+|++
T Consensus 188 ~~~l~~~~~~~~~~vv~N~~ 207 (267)
T 3k9g_A 188 NFFVRKLNLFLPIFLIITRF 207 (267)
T ss_dssp HHHHHTTTCCCCEEEEEEEE
T ss_pred HHHHHHHhccCCEEEEEecc
Confidence 99999886532 37999999
No 17
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.91 E-value=4.2e-24 Score=187.23 Aligned_cols=186 Identities=22% Similarity=0.243 Sum_probs=118.9
Q ss_pred hhhhhcCCceEEEEEe--CCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCC---cceeccCC--Cc
Q 023886 19 VRNILEQDSLKWVFVG--GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKT---PTLVNGFS--NL 91 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s--~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~---~~~~~~~~--~l 91 (276)
+++++....+.|+|++ +||||||||+|+|||..||+.|+||++||+|+|++++.+++...... .++.+.+. .+
T Consensus 26 ~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~ 105 (298)
T 2oze_A 26 LRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNL 105 (298)
T ss_dssp HHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCC
T ss_pred HHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCCh
Confidence 3444444556778888 89999999999999999999999999999999999887775332211 11111100 00
Q ss_pred eeeecCCcccccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHH
Q 023886 92 YAMEVDPSVEEET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLD 170 (276)
Q Consensus 92 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~ 170 (276)
...-......+++ ++...+... ..+...+........+.++++.++. +||||||||||+++..+..++-
T Consensus 106 ~~~~~~~~~~l~vlp~~~~~~~~-~~l~~~~~~~~~~~~l~~~l~~l~~-~yD~IiiD~pp~~~~~~~~~l~-------- 175 (298)
T 2oze_A 106 ASSIVHLTDNLDLIPGTFDLMLL-PKLTRSWTFENESRLLATLLAPLKS-DYDLIIIDTVPTPSVYTNNAIV-------- 175 (298)
T ss_dssp GGGCEESSSSEEEECCCGGGGGH-HHHTTTSCHHHHHTHHHHHHGGGGG-GCSEEEEEECSSCSHHHHHHHH--------
T ss_pred hhhhcccCCCeEEEeCCchHHHH-HHHhhhhccccHHHHHHHHHHHHhc-CCCEEEEECCCCccHHHHHHHH--------
Confidence 0000000011122 332222211 1111111001123457888888886 8999999999987655433320
Q ss_pred HHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhh
Q 023886 171 KMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK 250 (276)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~ 250 (276)
..+.+++|+.|+..++..+.++++.+++
T Consensus 176 ----------------------------------------------------~aD~viiv~~~~~~s~~~~~~~~~~l~~ 203 (298)
T 2oze_A 176 ----------------------------------------------------ASDYVMIPLQAEEESTNNIQNYISYLID 203 (298)
T ss_dssp ----------------------------------------------------HCSEEEEEECGGGCCHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HCCeEEEEecCcHHHHHHHHHHHHHHHH
Confidence 1366899999999999999999888876
Q ss_pred ------CCCCcCeEEEccccCC
Q 023886 251 ------FEIDTHNIIINQVLYD 266 (276)
Q Consensus 251 ------~~~~~~g~vvN~~~~~ 266 (276)
.++++.|+|+|++.+.
T Consensus 204 ~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 204 LQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp HHHHHCTTCEEEEEEEEESCTT
T ss_pred HHHHhCCCCeEEEEEEEEECCC
Confidence 3788889999998654
No 18
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.91 E-value=1.4e-24 Score=186.52 Aligned_cols=171 Identities=21% Similarity=0.227 Sum_probs=108.7
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecC-Cccccc
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVD-PSVEEE 103 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 103 (276)
.+++.|+|+|+||||||||+|+|||.+||+.|+||++||+|+|++++.+|+.... .++.+.+.+-...+.- ....++
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~l~~~~~--~~l~~~l~~~~~~~~i~~~~~l~ 81 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAE--RGVYHLLQGEPLEGLVHPVDGFH 81 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHTTCCCS--CCHHHHHTTCCGGGTCEEETTEE
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHHHHhCCCCC--CCHHHHHcCCCHHHHccccCCEE
Confidence 3456677999999999999999999999999999999999999999999886542 1211111100000000 001111
Q ss_pred c-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 023886 104 T-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGM 182 (276)
Q Consensus 104 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~ 182 (276)
+ +....+...+..+.... ..+.++++. . +||||||||||+++..+..++
T Consensus 82 vlp~~~~~~~~~~~l~~~~------~~l~~~l~~--~-~yD~iiiD~pp~~~~~~~~~l--------------------- 131 (257)
T 1wcv_1 82 LLPATPDLVGATVELAGAP------TALREALRD--E-GYDLVLLDAPPSLSPLTLNAL--------------------- 131 (257)
T ss_dssp EECCCTTHHHHHHHHTTCT------THHHHHCCC--T-TCSEEEEECCSSCCHHHHHHH---------------------
T ss_pred EEeCChhHHHHHHHHhhHH------HHHHHHhcc--c-CCCEEEEeCCCCCCHHHHHHH---------------------
Confidence 1 22222222211221110 244555544 3 799999999998654432221
Q ss_pred HhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhh------CCCCcC
Q 023886 183 INQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK------FEIDTH 256 (276)
Q Consensus 183 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~------~~~~~~ 256 (276)
. ..+.+++|+.|+..++..+.++++.+++ .++++.
T Consensus 132 -------------------------------------~--~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~ 172 (257)
T 1wcv_1 132 -------------------------------------A--AAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLL 172 (257)
T ss_dssp -------------------------------------H--HCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred -------------------------------------H--HCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 0 1256899999999999998888887764 267778
Q ss_pred eEEEccccCC
Q 023886 257 NIIINQVLYD 266 (276)
Q Consensus 257 g~vvN~~~~~ 266 (276)
|+|+|++.+.
T Consensus 173 gvv~N~~~~~ 182 (257)
T 1wcv_1 173 GILVTMYDGR 182 (257)
T ss_dssp EEEEESBCTT
T ss_pred EEEEEeECCC
Confidence 9999998543
No 19
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.91 E-value=1.2e-23 Score=185.24 Aligned_cols=189 Identities=19% Similarity=0.213 Sum_probs=105.9
Q ss_pred cccccchhhhhcCCce-EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCc
Q 023886 13 EIPEGSVRNILEQDSL-KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNL 91 (276)
Q Consensus 13 ~~~~~~l~~~~~~~~~-~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l 91 (276)
..++..+......+.+ .|+|+ +||||||||+|+|||.+||++|+||++||+|+|++++.+|+.... .++.+.+.+.
T Consensus 26 ~~l~~~l~~~~~~~~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~--~~l~d~l~~~ 102 (307)
T 3end_A 26 GSVQVHLDEADKITGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLV--PTVIDVLKDV 102 (307)
T ss_dssp --------------CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCC--CCHHHHHHHT
T ss_pred chhhhhhccccccCCceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCC--CCHHHHHhhc
Confidence 4455555555444444 44577 999999999999999999999999999999999999998875432 2221111000
Q ss_pred --eeeecCCcccccccCccCcchHHHHHhccCC--CchHHHHHHHHHHH--hccCCCcEEEEcCCCchhHHHhhhhHHHH
Q 023886 92 --YAMEVDPSVEEETGSTEGMDSLFSELANAIP--GIDEAMSFAEMLKL--VQTMDYSCIVFDTAPTGHTLRLLQFPSTL 165 (276)
Q Consensus 92 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~--l~~~~yD~IiiD~pp~~~~l~~~~ip~~~ 165 (276)
..........+ .+...++..++........ .........++++. +.+ +||||||||||.........+
T Consensus 103 ~~~~~~~~~~~~i-~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~yD~ViiD~p~~~~~~~~~~~---- 176 (307)
T 3end_A 103 DFHPEELRPEDFV-FEGFNGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLD-DTDVVIFDVLGDVVCGGFAAP---- 176 (307)
T ss_dssp TSCGGGCCHHHHC-EECGGGCEEEECCCCCSSSSCTTHHHHHHHHHHHHTTTTS-SCSEEEEEECCSSCCGGGGGG----
T ss_pred cccccCCCHHHhh-ccCCCCceEEECCCcccccccchhhhHHHHHHHHhhhccc-cCCEEEEeCCCccchHHHHHH----
Confidence 00000000000 0001111111100000000 00111223445555 554 899999999997542211110
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHH
Q 023886 166 EKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLV 245 (276)
Q Consensus 166 ~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~ 245 (276)
-...+.+++|+.|+..++..+.++.
T Consensus 177 -------------------------------------------------------l~~aD~viiv~~~~~~s~~~~~~~~ 201 (307)
T 3end_A 177 -------------------------------------------------------LQHADQAVVVTANDFDSIYAMNRII 201 (307)
T ss_dssp -------------------------------------------------------GGTCSEEEEEECSSHHHHHHHHHHH
T ss_pred -------------------------------------------------------HHHCCEEEEEecCcHHHHHHHHHHH
Confidence 0124679999999999999999999
Q ss_pred HHHhh----CCCCcCeEEEccccC
Q 023886 246 QELTK----FEIDTHNIIINQVLY 265 (276)
Q Consensus 246 ~~l~~----~~~~~~g~vvN~~~~ 265 (276)
+.+++ .++++.|+|+||+..
T Consensus 202 ~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 202 AAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp HHHHTTTTTCCCEEEEEEEESCSC
T ss_pred HHHHHhhhcCCCceEEEEEecCCc
Confidence 99986 467778999999964
No 20
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.91 E-value=1.2e-23 Score=174.01 Aligned_cols=137 Identities=15% Similarity=0.176 Sum_probs=105.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST 107 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 107 (276)
+.|+|+|+|||+||||+|+|||..|+++|+||++||+|||++++.+++.... ++.....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~----------~~~~~~~----------- 60 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKA----------AFDVFTA----------- 60 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCC----------SSEEEEC-----------
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCC----------CCcEEec-----------
Confidence 4567999999999999999999999999999999999999999998874321 1111110
Q ss_pred cCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhh
Q 023886 108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMT 187 (276)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~ 187 (276)
+. ..+.+.++.+++ +||||||||||+.+.....++
T Consensus 61 --------------~~----~~l~~~l~~l~~-~yD~viiD~~~~~~~~~~~~l-------------------------- 95 (206)
T 4dzz_A 61 --------------AS----EKDVYGIRKDLA-DYDFAIVDGAGSLSVITSAAV-------------------------- 95 (206)
T ss_dssp --------------CS----HHHHHTHHHHTT-TSSEEEEECCSSSSHHHHHHH--------------------------
T ss_pred --------------Cc----HHHHHHHHHhcC-CCCEEEEECCCCCCHHHHHHH--------------------------
Confidence 00 356778888886 899999999998643322221
Q ss_pred hhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCC-----CCcCeEEEcc
Q 023886 188 RLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFE-----IDTHNIIINQ 262 (276)
Q Consensus 188 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~-----~~~~g~vvN~ 262 (276)
...+.+++|+.|+..+ ..+.++.+.+++.+ +++ ++|+|+
T Consensus 96 ----------------------------------~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~-~vv~N~ 139 (206)
T 4dzz_A 96 ----------------------------------MVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEA-RFLITR 139 (206)
T ss_dssp ----------------------------------HHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEE-EEEECS
T ss_pred ----------------------------------HHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcE-EEEEec
Confidence 0125689999999999 99999999998764 566 999999
Q ss_pred ccCC
Q 023886 263 VLYD 266 (276)
Q Consensus 263 ~~~~ 266 (276)
+.+.
T Consensus 140 ~~~~ 143 (206)
T 4dzz_A 140 KIEM 143 (206)
T ss_dssp BCTT
T ss_pred cCCC
Confidence 9654
No 21
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.90 E-value=1.6e-24 Score=195.12 Aligned_cols=180 Identities=16% Similarity=0.178 Sum_probs=113.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCC--------C----------cceeccCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTK--------T----------PTLVNGFS 89 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~--------~----------~~~~~~~~ 89 (276)
+.|+|+|+||||||||+|+|||.+||+.|+|||+||+|+|++++..+...... . .++.+.+.
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~l~ 81 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAIFV 81 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGGGH
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHHHH
Confidence 46679999999999999999999999999999999999999998877532110 0 12221110
Q ss_pred -------Ccee--eecC-Ccccccc-cCccCcchHHHHHhccC----CCc----hHHHHHHHHHHHhcc-CCCcEEEEcC
Q 023886 90 -------NLYA--MEVD-PSVEEET-GSTEGMDSLFSELANAI----PGI----DEAMSFAEMLKLVQT-MDYSCIVFDT 149 (276)
Q Consensus 90 -------~l~~--~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~----~~~----~~~~~l~~~l~~l~~-~~yD~IiiD~ 149 (276)
++.. .... ....+++ ++...+......+...+ .+. .....+.++++.+++ .+||||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~yD~VIID~ 161 (361)
T 3pg5_A 82 PLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAMERDDRYDVIFFDV 161 (361)
T ss_dssp HHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHhhccCCCEEEEEC
Confidence 0100 0000 0011222 44444443333222110 000 001247788888862 3799999999
Q ss_pred CCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEE
Q 023886 150 APTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVC 229 (276)
Q Consensus 150 pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 229 (276)
||+++.++..++ ...+.+++
T Consensus 162 pP~l~~~~~~aL------------------------------------------------------------~~aD~vii 181 (361)
T 3pg5_A 162 GPSLGPFNRTVL------------------------------------------------------------LGCDAFVT 181 (361)
T ss_dssp CSCCSHHHHHHH------------------------------------------------------------TTCSEEEE
T ss_pred CCCcCHHHHHHH------------------------------------------------------------HHCCEEEE
Confidence 999776554443 12477899
Q ss_pred EecCCcccHHHHHHHHHHHhhCC-------------------------------------CCcCeEEEccccCCC
Q 023886 230 VCIPEFLSLYETERLVQELTKFE-------------------------------------IDTHNIIINQVLYDD 267 (276)
Q Consensus 230 V~~p~~~~~~ea~~~~~~l~~~~-------------------------------------~~~~g~vvN~~~~~~ 267 (276)
|+.|+..++..+.++.+.+++.+ +++.|+|+|++....
T Consensus 182 p~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~lG~v~n~~~~r~ 256 (361)
T 3pg5_A 182 PTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLRLGGFDGEGLRYLGYTTLEYVKRR 256 (361)
T ss_dssp EECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSCTTSSSSSCCEEEEEEECC-----
T ss_pred EecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccccccccccccccccccceeeEEEEcchhhc
Confidence 99999999999888888877541 778899999987654
No 22
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.90 E-value=2.2e-23 Score=176.41 Aligned_cols=169 Identities=21% Similarity=0.187 Sum_probs=114.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcceeccCC---Cceee-ecCCcccc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFS---NLYAM-EVDPSVEE 102 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~~~~~~---~l~~~-~~~~~~~~ 102 (276)
+.|+|+|+|||+||||+|+|||.+|+++|+||++||+|+ +++++..||.+... .++.+.+. .+... ...+...+
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~-~~l~~~l~~~~~~~~~i~~~~~~~l 81 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPD-VTLHDVLAGEANVEDAIYMTQFDNV 81 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCS-SCHHHHHTTSSCGGGGCEECSSTTE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCC-CCHHHHhcCCCCHHHHhhcCCCCCE
Confidence 466799999999999999999999999999999999999 58899999876431 11111111 00000 00000111
Q ss_pred cc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 023886 103 ET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181 (276)
Q Consensus 103 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~ 181 (276)
++ ++..... ...+. ....+.++++.++. +||||||||||+.+......+
T Consensus 82 ~~lp~~~~~~--~~~~~-------~~~~l~~~l~~l~~-~yD~viiD~~~~~~~~~~~~~-------------------- 131 (237)
T 1g3q_A 82 YVLPGAVDWE--HVLKA-------DPRKLPEVIKSLKD-KFDFILIDCPAGLQLDAMSAM-------------------- 131 (237)
T ss_dssp EEECCCCSHH--HHHHC-------CGGGHHHHHHTTGG-GCSEEEEECCSSSSHHHHHHH--------------------
T ss_pred EEEeCCCccc--hhhhc-------CHHHHHHHHHHHHh-cCCEEEEECCCCcCHHHHHHH--------------------
Confidence 11 2110000 00110 02356788888886 899999999998553221111
Q ss_pred hHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEc
Q 023886 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN 261 (276)
Q Consensus 182 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN 261 (276)
...+.+++|+.|+..++.++.++++.+++.+.++.|+|+|
T Consensus 132 ----------------------------------------~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N 171 (237)
T 1g3q_A 132 ----------------------------------------LSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLN 171 (237)
T ss_dssp ----------------------------------------TTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred ----------------------------------------HHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEe
Confidence 1236799999999999999999999999999999999999
Q ss_pred cccCCC
Q 023886 262 QVLYDD 267 (276)
Q Consensus 262 ~~~~~~ 267 (276)
++.+..
T Consensus 172 ~~~~~~ 177 (237)
T 1g3q_A 172 RYGRSD 177 (237)
T ss_dssp EETSCT
T ss_pred cCCccc
Confidence 997654
No 23
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.90 E-value=4.4e-23 Score=176.80 Aligned_cols=168 Identities=20% Similarity=0.182 Sum_probs=113.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcceeccCC---Cceee--ecCCccc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFS---NLYAM--EVDPSVE 101 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~~~~~~---~l~~~--~~~~~~~ 101 (276)
+.|+|+|+||||||||+|+|||.+||++|+||++||+|+ +++++.+||........+.+.+. .+... .......
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 82 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSSTT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCCC
Confidence 456799999999999999999999999999999999999 79999999876542222111110 00000 0000011
Q ss_pred ccc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHh
Q 023886 102 EET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFG 180 (276)
Q Consensus 102 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~ 180 (276)
+++ ++..... ........+.++++.+++.+||||||||||+.+.....++
T Consensus 83 l~~lp~~~~~~----------~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~~~~~~l------------------- 133 (260)
T 3q9l_A 83 LYILPASQTRD----------KDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMAL------------------- 133 (260)
T ss_dssp EEEECCCSCCC----------TTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSHHHHHHH-------------------
T ss_pred EEEecCCCccc----------hhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCHHHHHHH-------------------
Confidence 111 1111110 0111234578888888743799999999998654322221
Q ss_pred hhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCC-------
Q 023886 181 GMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEI------- 253 (276)
Q Consensus 181 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~------- 253 (276)
...+.+++|+.|+..++..+.++.+.++..+.
T Consensus 134 -----------------------------------------~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~ 172 (260)
T 3q9l_A 134 -----------------------------------------YFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEE 172 (260)
T ss_dssp -----------------------------------------HTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCS
T ss_pred -----------------------------------------HhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccC
Confidence 02367899999999999999999999987753
Q ss_pred -CcCeEEEccccC
Q 023886 254 -DTHNIIINQVLY 265 (276)
Q Consensus 254 -~~~g~vvN~~~~ 265 (276)
...++|+|++.+
T Consensus 173 ~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 173 PIKEHLLLTRYNP 185 (260)
T ss_dssp CCEEEEEEEEECH
T ss_pred CcceEEEEecCCc
Confidence 467999999864
No 24
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.89 E-value=4.6e-23 Score=177.29 Aligned_cols=168 Identities=15% Similarity=0.163 Sum_probs=113.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcceeccCCC---ceeeecCCccccc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTLVNGFSN---LYAMEVDPSVEEE 103 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~ 103 (276)
+.|+|+|+||||||||+|+|||.+|+++|+||++||+|+ +++++..||..... .++.+.+.+ +...-......++
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~-~~l~~~l~~~~~~~~~i~~~~~~l~ 81 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLP-VTLQNVLAGEARIDEAIYVGPGGVK 81 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCC-CCHHHHHTTSSCGGGGCEECGGGCE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCC-CCHHHHHcCCCcHHHhheeCCCCeE
Confidence 466799999999999999999999999999999999999 68999999876431 111111110 0000000001111
Q ss_pred c-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhhh
Q 023886 104 T-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGM 182 (276)
Q Consensus 104 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~ 182 (276)
+ ++..... ...+ .....+.++++.++. +||||||||||+.+......+
T Consensus 82 ~lp~~~~~~--~~~~-------~~~~~l~~~l~~l~~-~yD~viiD~~~~~~~~~~~~~--------------------- 130 (263)
T 1hyq_A 82 VVPAGVSLE--GLRK-------ANPEKLEDVLTQIME-STDILLLDAPAGLERSAVIAI--------------------- 130 (263)
T ss_dssp EEECCSCHH--HHHH-------HCHHHHHHHHHHHHH-TCSEEEEECCSSSSHHHHHHH---------------------
T ss_pred EEcCCCCcC--hhhc-------cChHHHHHHHHHHHh-hCCEEEEeCCCCCChHHHHHH---------------------
Confidence 1 2111000 0001 003467788888886 899999999998553322111
Q ss_pred HhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcc
Q 023886 183 INQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQ 262 (276)
Q Consensus 183 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~ 262 (276)
...+.+++|+.|+..++..+.++++.+++.+.++.|+|+|+
T Consensus 131 ---------------------------------------~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~ 171 (263)
T 1hyq_A 131 ---------------------------------------AAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNR 171 (263)
T ss_dssp ---------------------------------------HHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred ---------------------------------------HHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEcc
Confidence 01256899999999999999999999999899999999999
Q ss_pred ccCC
Q 023886 263 VLYD 266 (276)
Q Consensus 263 ~~~~ 266 (276)
+.+.
T Consensus 172 ~~~~ 175 (263)
T 1hyq_A 172 ITTL 175 (263)
T ss_dssp ECTT
T ss_pred CCcc
Confidence 9654
No 25
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.89 E-value=2.9e-23 Score=183.17 Aligned_cols=176 Identities=20% Similarity=0.202 Sum_probs=100.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST 107 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 107 (276)
.||+-++|||||||||+|+|||.+||+.|+||++||+|||++.+..++..........................+ ....
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i-~~~~ 126 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFV-FEGF 126 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHC-EECG
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHhe-eecC
Confidence 455544599999999999999999999999999999999999877665432211000000000000000000000 0000
Q ss_pred cCcchHHHH--Hhc-cCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHh-hhhHHHHHHHHHHHHHHHHHHhhhH
Q 023886 108 EGMDSLFSE--LAN-AIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRL-LQFPSTLEKGLDKMMSLKNKFGGMI 183 (276)
Q Consensus 108 ~~~~~~~~~--~~~-~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~-~~ip~~~~~~l~~l~~~~~~~~~~~ 183 (276)
.++..++.. ... ..........+..+.+......||||++||||+...+.+ +++
T Consensus 127 ~~i~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~~al---------------------- 184 (314)
T 3fwy_A 127 NGVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFAAPL---------------------- 184 (314)
T ss_dssp GGCEEEECCCCCTTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGGGGG----------------------
T ss_pred CCeEEEeCCCCcccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhHhHH----------------------
Confidence 011000000 000 001111112233333322223799999999998554433 221
Q ss_pred hhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhh----CCCCcCeEE
Q 023886 184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK----FEIDTHNII 259 (276)
Q Consensus 184 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~----~~~~~~g~v 259 (276)
...+.+++|++|+..+++.+.++.+.++. .+.++.|+|
T Consensus 185 --------------------------------------~aAd~viIvt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI 226 (314)
T 3fwy_A 185 --------------------------------------QHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCV 226 (314)
T ss_dssp --------------------------------------GTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEE
T ss_pred --------------------------------------hhCCeEEEEeCCcHHHHHHHHHHHHHHHHHhccCCCceEEEE
Confidence 02367999999999999999999888875 356778999
Q ss_pred Ecccc
Q 023886 260 INQVL 264 (276)
Q Consensus 260 vN~~~ 264 (276)
+|+..
T Consensus 227 ~n~~~ 231 (314)
T 3fwy_A 227 ANRSR 231 (314)
T ss_dssp EESCS
T ss_pred EcCCC
Confidence 99764
No 26
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.87 E-value=5.6e-23 Score=187.33 Aligned_cols=135 Identities=17% Similarity=0.215 Sum_probs=79.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHH------hCCCcEEEEecCCCCChhHHhccccCC---CcceeccC-CCce---
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLA------EVRPSVLIISTDPAHNLSDAFQQRFTK---TPTLVNGF-SNLY--- 92 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la------~~G~kVlliD~D~~~~l~~~l~~~~~~---~~~~~~~~-~~l~--- 92 (276)
.++.|+|+|+||||||||+|+|||.+|| +.|+|||+||+|+|++++.+|+..... ..+..+.+ ..+.
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKHSIGIVNATSAQAMLQNVSREE 186 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCHHHHHHSCHHHHSSCCSCHHHHHHHCCCHHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhHHhCCccccccccccHHHHHHhhccccc
Confidence 3466779999999999999999999999 479999999999999999999875421 11111100 0000
Q ss_pred ----eeecCCcccccc-cCccCcchHHH---H-HhccCCCc-hHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhh
Q 023886 93 ----AMEVDPSVEEET-GSTEGMDSLFS---E-LANAIPGI-DEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQF 161 (276)
Q Consensus 93 ----~~~~~~~~~~~~-~~~~~~~~~~~---~-~~~~~~~~-~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~i 161 (276)
.........+++ ++...+..... . .....++. .....+.++++.+++ +||||||||||+++..+..++
T Consensus 187 ~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~-~yD~ViiD~pp~~~~~~~~~l 264 (398)
T 3ez2_A 187 LLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLKS-DYDFILVDSGPHLDAFLKNAL 264 (398)
T ss_dssp HHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHTT-TCSEEEEEECSCCSHHHHHHH
T ss_pred cHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhhc-cCCEEEEeCCCCccHHHHHHH
Confidence 000000011122 33322211100 0 00001111 112345678888886 899999999999776654443
No 27
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.87 E-value=9.8e-22 Score=163.83 Aligned_cols=131 Identities=21% Similarity=0.150 Sum_probs=98.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcccccccCcc
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTE 108 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 108 (276)
.|+|+|+||||||||+|+|||..|+++| ||++||+|+|++++.+++. . + ++ . ..+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~-~--~------l~--------~-~vi------ 56 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKR-G--S------LP--------F-KVV------ 56 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHH-S--C------CS--------S-EEE------
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcC-C--C------CC--------c-cee------
Confidence 5779999999999999999999999999 9999999999999988875 1 0 00 0 000
Q ss_pred CcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCc-hhHHHhhhhHHHHHHHHHHHHHHHHHHhhhHhhhh
Q 023886 109 GMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPT-GHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMT 187 (276)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~-~~~l~~~~ip~~~~~~l~~l~~~~~~~~~~~~~~~ 187 (276)
+. . .++.+.. +||||||||||+ .+.....++
T Consensus 57 -------------~~-~-------~l~~l~~-~yD~viiD~p~~~~~~~~~~~l-------------------------- 88 (209)
T 3cwq_A 57 -------------DE-R-------QAAKYAP-KYQNIVIDTQARPEDEDLEALA-------------------------- 88 (209)
T ss_dssp -------------EG-G-------GHHHHGG-GCSEEEEEEECCCSSSHHHHHH--------------------------
T ss_pred -------------CH-H-------HHHHhhh-cCCEEEEeCCCCcCcHHHHHHH--------------------------
Confidence 00 0 3445555 899999999998 543322211
Q ss_pred hhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhC-CCCcCeEEEccccCC
Q 023886 188 RLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF-EIDTHNIIINQVLYD 266 (276)
Q Consensus 188 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~-~~~~~g~vvN~~~~~ 266 (276)
...+.+++++.|+..++..+.++++.+++. +.+ .++|+|++.+.
T Consensus 89 ----------------------------------~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~ 133 (209)
T 3cwq_A 89 ----------------------------------DGCDLLVIPSTPDALALDALMLTIETLQKLGNNR-FRILLTIIPPY 133 (209)
T ss_dssp ----------------------------------HTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSS-EEEEECSBCCT
T ss_pred ----------------------------------HHCCEEEEEecCCchhHHHHHHHHHHHHhccCCC-EEEEEEecCCc
Confidence 023568899999999999999999999884 555 68999998654
Q ss_pred C
Q 023886 267 D 267 (276)
Q Consensus 267 ~ 267 (276)
.
T Consensus 134 ~ 134 (209)
T 3cwq_A 134 P 134 (209)
T ss_dssp T
T ss_pred c
Confidence 3
No 28
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.86 E-value=2.6e-22 Score=175.20 Aligned_cols=48 Identities=31% Similarity=0.486 Sum_probs=42.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~ 76 (276)
+.|+| ++||||||||+|+|||.+||++|+||++||+|||++++.++..
T Consensus 3 kvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~ 50 (289)
T 2afh_E 3 RQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILH 50 (289)
T ss_dssp EEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHC
T ss_pred eEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcC
Confidence 34456 7999999999999999999999999999999999988777653
No 29
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.86 E-value=2.8e-22 Score=172.93 Aligned_cols=173 Identities=17% Similarity=0.232 Sum_probs=98.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCC------ceeeecCCcccc
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSN------LYAMEVDPSVEE 102 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~------l~~~~~~~~~~~ 102 (276)
.|+| ++||||||||+|+|||.+||++|+||++||+|+|++.+..+..... .+++.+.+.+ +..........+
T Consensus 3 vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~i~~~~~~l 80 (269)
T 1cp2_A 3 QVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLA-QKSVLDTLREEGEDVELDSILKEGYGGI 80 (269)
T ss_dssp EEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCC-CCCHHHHHHHHGGGCCHHHHCEECGGGC
T ss_pred EEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCC-cccHHHHHhccCcCCCHHHhhccCCCCe
Confidence 4456 7999999999999999999999999999999999987766643221 1111110000 000000000011
Q ss_pred cc-cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHHHHhh
Q 023886 103 ET-GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG 181 (276)
Q Consensus 103 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~~~~~ 181 (276)
++ +......... .. .++......+.+.++.+++ +||||||||||....- .+..|.
T Consensus 81 ~vl~~~~~~~~~~--~~--~~~~~~~~~~~~~l~~l~~-~yD~iiiD~~~~~~~~-~~~~~~------------------ 136 (269)
T 1cp2_A 81 RCVESGGPEPGVG--CA--GRGIITSINMLEQLGAYTD-DLDYVFYDVLGDVVCG-GFAMPI------------------ 136 (269)
T ss_dssp EEEECCCCCTTSS--CH--HHHHHHHHHHHHHTTCCCT-TCSEEEEEEECSSCST-TTTHHH------------------
T ss_pred eEEeCCCchhhcc--cc--CcchhhHHHHHHHHHhhcc-CCCEEEEeCCchhhhh-hhhhhh------------------
Confidence 11 1111110000 00 0000001112233333444 7999999999863210 000000
Q ss_pred hHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhC----CCCcCe
Q 023886 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKF----EIDTHN 257 (276)
Q Consensus 182 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~----~~~~~g 257 (276)
.....+.+++|+.|+..++..+.++.+.++.. ++++.|
T Consensus 137 --------------------------------------~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~g 178 (269)
T 1cp2_A 137 --------------------------------------REGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGG 178 (269)
T ss_dssp --------------------------------------HTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEE
T ss_pred --------------------------------------hHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 01234779999999999999999888888753 677789
Q ss_pred EEEccccC
Q 023886 258 IIINQVLY 265 (276)
Q Consensus 258 ~vvN~~~~ 265 (276)
+|+|++..
T Consensus 179 vv~N~~~~ 186 (269)
T 1cp2_A 179 IICNSRKV 186 (269)
T ss_dssp EEEECCSS
T ss_pred EEeecCCc
Confidence 99999853
No 30
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.85 E-value=5.2e-22 Score=173.19 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=72.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC-CCChhHHhccccCCCcce-eccCCCc-eeeecCCcccccc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP-AHNLSDAFQQRFTKTPTL-VNGFSNL-YAMEVDPSVEEET 104 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~-~~~l~~~l~~~~~~~~~~-~~~~~~l-~~~~~~~~~~~~~ 104 (276)
+.|+|+|+||||||||+|+|||.+|++.|+||++||+|+ |++++.+|+.+....... .....++ ...
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~~~~~~~~l~~vl---------- 74 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIELPEPLALNL---------- 74 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHHTCCCCCCEEECS----------
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhccccCCCchheEe----------
Confidence 356799999999999999999999999999999999999 999999998653100000 0000111 000
Q ss_pred cCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHH
Q 023886 105 GSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTL 156 (276)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l 156 (276)
+... ...+. .........+.++++.++. +||||||||||+.+..
T Consensus 75 ~~~~-----~~~~~--~~~~~~~~~l~~~l~~l~~-~yD~viiD~p~~~~~~ 118 (286)
T 2xj4_A 75 SDND-----VALAE--RPEEEQVAGFEAAFARAMA-ECDFILIDTPGGDSAI 118 (286)
T ss_dssp SSCH-----HHHTT--SCHHHHHHHHHHHHHHHHH-HCSEEEEECCSSCCHH
T ss_pred eCCC-----CCCcC--hhhhhhHHHHHHHHHHHHh-cCCEEEEcCCCCccHH
Confidence 1000 00000 0011223467888888886 8999999999986433
No 31
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.85 E-value=2.9e-22 Score=182.95 Aligned_cols=53 Identities=25% Similarity=0.298 Sum_probs=37.2
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHH------hCCCcEEEEecCCCCChhHHhcccc
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLA------EVRPSVLIISTDPAHNLSDAFQQRF 78 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la------~~G~kVlliD~D~~~~l~~~l~~~~ 78 (276)
+++.|+|+|+||||||||+|+|||.+|| +.|+|||+||+|+|++++.+|+...
T Consensus 110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~~l~~~l~~~~ 168 (403)
T 3ez9_A 110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTH 168 (403)
T ss_dssp SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGGGSCC----
T ss_pred CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhhhhCCCc
Confidence 4466779999999999999999999999 6899999999999999998888654
No 32
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.85 E-value=8.2e-22 Score=178.20 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=49.3
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFT 79 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~ 79 (276)
++++.|+|+|+||||||||+|+|||.+||++|+||++||+|++++++.+||....
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~~ 195 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGN 195 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSCS
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCCC
Confidence 3446677999999999999999999999999999999999999999999987654
No 33
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.78 E-value=1.6e-18 Score=145.15 Aligned_cols=176 Identities=13% Similarity=0.035 Sum_probs=99.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccCCCcceeccCCCceeeecCCcc--ccccc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSV--EEETG 105 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~ 105 (276)
+.|+|+|+||||||||+|+|||.+|+++|+||+++| ||.+..... +..........+............ ...+.
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d--p~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 77 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK--PVASGSEKT--PEGLRNSDALALQRNSSLQLDYATVNPYTFA 77 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESCBCC--TTSCBCHHHHHHHHTCSSCCCHHHHCSEEES
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc--ceecCCccC--CCCcChHHHHHHHHHhCCCCChhhcccEEeC
Confidence 457799999999999999999999999999999974 543211000 000000000000000000000000 00000
Q ss_pred CccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhH-HHhhhhHHHHHHHHHHHHHHHHHHhhhHh
Q 023886 106 STEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHT-LRLLQFPSTLEKGLDKMMSLKNKFGGMIN 184 (276)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~-l~~~~ip~~~~~~l~~l~~~~~~~~~~~~ 184 (276)
. .....+...... .+ .....+.+.++.+++ +||||||||||+++. +.....
T Consensus 78 ~-~~~~~~~~~~~~-~~--~~~~~l~~~l~~l~~-~yD~viID~p~~l~~p~~~~~~----------------------- 129 (224)
T 1byi_A 78 E-PTSPHIISAQEG-RP--IESLVMSAGLRALEQ-QADWVLVEGAGGWFTPLSDTFT----------------------- 129 (224)
T ss_dssp S-CSCHHHHHHHHT-CC--CCHHHHHHHHHHHHT-TCSEEEEECSSSTTCEEETTEE-----------------------
T ss_pred C-CCCHHHHHHHcC-CC--CCHHHHHHHHHHHHH-hCCEEEEEcCCccccCCCcchh-----------------------
Confidence 0 000001111111 11 123567888888886 899999999998542 100000
Q ss_pred hhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc
Q 023886 185 QMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL 264 (276)
Q Consensus 185 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~ 264 (276)
...+...+. ..+++|+.+...++.++...++.++..++++.|+|+|++.
T Consensus 130 ---------------------------~~~l~~~~~----~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~ 178 (224)
T 1byi_A 130 ---------------------------FADWVTQEQ----LPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVT 178 (224)
T ss_dssp ---------------------------HHHHHHHHT----CCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCS
T ss_pred ---------------------------HHHHHHHhC----CCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCC
Confidence 000001111 2378888899999999999999999999999999999996
Q ss_pred CC
Q 023886 265 YD 266 (276)
Q Consensus 265 ~~ 266 (276)
+.
T Consensus 179 ~~ 180 (224)
T 1byi_A 179 PP 180 (224)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 34
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.62 E-value=4.2e-15 Score=136.32 Aligned_cols=44 Identities=32% Similarity=0.403 Sum_probs=38.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCCCChh
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHNLS 71 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~~~l~ 71 (276)
++++.+.|+||+||||++++||.+++++ |+||++||+|++.+..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a 144 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAA 144 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccH
Confidence 4556555899999999999999999998 9999999999987644
No 35
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.52 E-value=4.9e-14 Score=123.24 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=39.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~ 71 (276)
.+++.+.|++|+||||++.+||..++..|+||+++|+|++.+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a 141 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAA 141 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHH
Confidence 45666669999999999999999999999999999999987754
No 36
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.51 E-value=1.8e-12 Score=114.39 Aligned_cols=43 Identities=30% Similarity=0.331 Sum_probs=36.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l 70 (276)
.+++.+.|.+|+||||++.+||..++..|+||+++|+|++...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~ 147 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAG 147 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh
Confidence 4555444679999999999999999999999999999997653
No 37
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.47 E-value=1.1e-13 Score=118.28 Aligned_cols=43 Identities=23% Similarity=0.173 Sum_probs=39.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~ 71 (276)
..+++++|||||||||++.+||..++ .|+||++||+|||.+..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~ 56 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKEL 56 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCcccc
Confidence 46679999999999999999999999 99999999999997753
No 38
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.46 E-value=3.6e-13 Score=117.63 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=38.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~ 71 (276)
.+++.+.|++|+||||++.+||..++..|.+|+++|+|++.+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~ 141 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA 141 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhH
Confidence 44554449999999999999999999999999999999987654
No 39
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.43 E-value=6.6e-13 Score=121.39 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=38.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l 70 (276)
+.++++.|.+|+||||++.+||.++++.|+||+++|+|++...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~a 142 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG 142 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh
Confidence 5777777889999999999999999999999999999997653
No 40
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.42 E-value=7.3e-13 Score=120.81 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=38.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~ 71 (276)
.+++.+.|++|+||||++.+||..++..|++|+++|+|++.+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa 141 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA 141 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchh
Confidence 45555559999999999999999999999999999999987654
No 41
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.33 E-value=1e-11 Score=115.59 Aligned_cols=44 Identities=23% Similarity=0.185 Sum_probs=37.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~ 71 (276)
.+++.+.|.+|+||||++.+||.++++.|+||++||+|++.+..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa 144 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGA 144 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhH
Confidence 44555558899999999999999999999999999999987754
No 42
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.33 E-value=1.5e-11 Score=103.45 Aligned_cols=169 Identities=14% Similarity=0.063 Sum_probs=97.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe-----cCCC-CCh--hHHhccccCCCcceeccCCCceeeecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS-----TDPA-HNL--SDAFQQRFTKTPTLVNGFSNLYAMEVDP 98 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD-----~D~~-~~l--~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 98 (276)
++.+.|++...|+|||+++++|+.+|+++|+||..+= .|.. ..+ ++.+- ... +.+ .......+
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~~~~~~~~D~~~-~~~-------~~~-~~~~~~~~ 74 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQFSELCEDVESIL-NAY-------KHK-FTAAEINL 74 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSSSSSBHHHHHHH-HHT-------TTS-SCHHHHCS
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccCCCCCChHHHHH-Hhc-------CCC-CChhhEEE
Confidence 3556688889999999999999999999999999863 1110 011 01100 000 000 00000000
Q ss_pred cccccccCccCcchHHH-HHhccCCCchHHHHHHHHHHH-hccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHH
Q 023886 99 SVEEETGSTEGMDSLFS-ELANAIPGIDEAMSFAEMLKL-VQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLK 176 (276)
Q Consensus 99 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~-l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~ 176 (276)
..+. ...+.... .+.+. + .....+.+.++. +.+ +||+||||+|+++..-....
T Consensus 75 ---~~~~--~p~sp~~aa~~~~~-~--i~~~~i~~~~~~~l~~-~~D~vlIEgaggl~~p~~~~---------------- 129 (228)
T 3of5_A 75 ---ISFN--QAVAPHIIAAKTKV-D--ISIENLKQFIEDKYNQ-DLDILFIEGAGGLLTPYSDH---------------- 129 (228)
T ss_dssp ---EEES--SSSCHHHHHHHTTC-C--CCHHHHHHHHHGGGGS-SCSEEEEEEEEETTCBSSSS----------------
T ss_pred ---EEEC--CCCCHHHHHHHcCC-C--CCHHHHHHHHHHHHHc-cCCEEEEECCCccccccccc----------------
Confidence 0000 00111111 11111 1 122356777777 776 89999999998733100000
Q ss_pred HHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcC
Q 023886 177 NKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTH 256 (276)
Q Consensus 177 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~ 256 (276)
. ...++...+..+ +++|+.+...++.++....+.++..++++.
T Consensus 130 -------------------~--------------~~adla~~l~~p----viLV~~~~~~~i~~~~~~~~~l~~~~~~i~ 172 (228)
T 3of5_A 130 -------------------T--------------TQLDLIKALQIP----VLLVSAIKVGCINHTLLTINELNRHNIKLA 172 (228)
T ss_dssp -------------------C--------------BHHHHHHHHTCC----EEEEEECSTTHHHHHHHHHHHHHHTTCCEE
T ss_pred -------------------h--------------hHHHHHHHcCCC----EEEEEcCCcchHHHHHHHHHHHHhCCCcEE
Confidence 0 001112222333 899999999999999999999999999999
Q ss_pred eEEEccccCC
Q 023886 257 NIIINQVLYD 266 (276)
Q Consensus 257 g~vvN~~~~~ 266 (276)
|+|+|++.++
T Consensus 173 GvIlN~~~~~ 182 (228)
T 3of5_A 173 GWIANCNDSN 182 (228)
T ss_dssp EEEEEECCTT
T ss_pred EEEEECcCCc
Confidence 9999999654
No 43
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.29 E-value=2.4e-11 Score=111.33 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=37.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l 70 (276)
+++.+.|.+|+||||++.+||..++++|+||+++|+|++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~ 141 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA 141 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCch
Confidence 455556689999999999999999999999999999998653
No 44
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.29 E-value=9e-11 Score=99.88 Aligned_cols=179 Identities=12% Similarity=0.074 Sum_probs=101.0
Q ss_pred cccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe-----cCCCCChhHHhccccCCCcceeccCC
Q 023886 15 PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS-----TDPAHNLSDAFQQRFTKTPTLVNGFS 89 (276)
Q Consensus 15 ~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD-----~D~~~~l~~~l~~~~~~~~~~~~~~~ 89 (276)
+...++.+...+++.+.+++...|+|||++++.|+.+|+++|+||..+= ..+...-..++......... .
T Consensus 14 ~~~~~~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~~~-----~ 88 (251)
T 3fgn_A 14 LQGTENLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGVTQL-----A 88 (251)
T ss_dssp --------CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHHHCCCEE-----E
T ss_pred hhHHHHHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHHcCCCCC-----C
Confidence 3345566666565666677779999999999999999999999999874 11111111111100000000 0
Q ss_pred CceeeecCCcccccccCccCcchHHHHHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhH-HHhhhhHHHHHHH
Q 023886 90 NLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHT-LRLLQFPSTLEKG 168 (276)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~-l~~~~ip~~~~~~ 168 (276)
+... + ....+..........+. .....+.+.++.+.+ +||+||||+++++.. ++....
T Consensus 89 ~~~~----------~--~~p~sP~~aa~~~~~~~-~~~~~i~~~~~~l~~-~~D~vlIEGagGl~~pl~~~~~------- 147 (251)
T 3fgn_A 89 GLAR----------Y--PQPMAPAAAAEHAGMAL-PARDQIVRLIADLDR-PGRLTLVEGAGGLLVELAEPGV------- 147 (251)
T ss_dssp EEEE----------C--SSSSCHHHHHHHTTCCC-CCHHHHHHHHHTTCC-TTCEEEEECSSSTTCEEETTTE-------
T ss_pred CCee----------E--CCCCChHHHHHHcCCCC-CCHHHHHHHHHHHHh-cCCEEEEECCCCCcCCcCcccc-------
Confidence 0000 0 00011111111111101 123356777787876 899999999997421 000000
Q ss_pred HHHHHHHHHHHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHH
Q 023886 169 LDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248 (276)
Q Consensus 169 l~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l 248 (276)
...++.+.+. ..+++|+.++..++..+....+.+
T Consensus 148 ------------------------------------------~~adla~~l~----~pVILV~~~~~g~i~~~~lt~~~l 181 (251)
T 3fgn_A 148 ------------------------------------------TLRDVAVDVA----AAALVVVTADLGTLNHTKLTLEAL 181 (251)
T ss_dssp ------------------------------------------EHHHHHHHTT----CEEEEEECSSTTHHHHHHHHHHHH
T ss_pred ------------------------------------------hHHHHHHHcC----CCEEEEEcCCCccHHHHHHHHHHH
Confidence 0001112222 348999999999999999999999
Q ss_pred hhCCCCcCeEEEccccC
Q 023886 249 TKFEIDTHNIIINQVLY 265 (276)
Q Consensus 249 ~~~~~~~~g~vvN~~~~ 265 (276)
++.++++.|+|+|++..
T Consensus 182 ~~~g~~i~GvIlN~v~~ 198 (251)
T 3fgn_A 182 AAQQVSCAGLVIGSWPD 198 (251)
T ss_dssp HHTTCCEEEEEEEEECS
T ss_pred HhCCCCEEEEEEECCCC
Confidence 99999999999999953
No 45
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=99.27 E-value=1.4e-11 Score=102.68 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=41.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA 73 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~ 73 (276)
+..+|+++||||||||++.++|..++++|++|+++|.|+|++...+
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~ 51 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETE 51 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHH
Confidence 4457999999999999999999999999999999999999987643
No 46
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.25 E-value=2.1e-11 Score=111.43 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=39.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
..+++++.|++|+||||++.+||..++..|+||+++|+|++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP 138 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence 3678888899999999999999999999999999999998654
No 47
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.20 E-value=3.8e-10 Score=95.52 Aligned_cols=172 Identities=13% Similarity=0.106 Sum_probs=98.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe-----cCCC--CChh-HHhccccCCCcceeccCC-CceeeecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS-----TDPA--HNLS-DAFQQRFTKTPTLVNGFS-NLYAMEVDP 98 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD-----~D~~--~~l~-~~l~~~~~~~~~~~~~~~-~l~~~~~~~ 98 (276)
+.+.|++...|+|||++++.|+.+|+++|+||..+- .++. .... ..+-... .... ++....+.+
T Consensus 22 k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~-------~~~~~g~~~~~~~p 94 (242)
T 3qxc_A 22 HMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDN-------RLLDRSLTLKDISF 94 (242)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTTCCCSHHHHHHHHH-------HTTCTTCCHHHHCC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccCCCCchHHHHHHHH-------HHHhCCCChHHeee
Confidence 566678889999999999999999999999999984 2110 0000 0000000 0000 000000000
Q ss_pred cccccccCccCcchHHH-HHhccCCCchHHHHHHHHHHHhccCCCcEEEEcCCCchhHHHhhhhHHHHHHHHHHHHHHHH
Q 023886 99 SVEEETGSTEGMDSLFS-ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKN 177 (276)
Q Consensus 99 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~~~yD~IiiD~pp~~~~l~~~~ip~~~~~~l~~l~~~~~ 177 (276)
.-+ ....+.... .+...... .....+.+.++.+.+ +||+||||.++++..- ..
T Consensus 95 ---~~~--~~p~sp~~aa~~~g~~~~-i~~~~I~~~~~~l~~-~~D~vlIEGagGl~~p------l~------------- 148 (242)
T 3qxc_A 95 ---YRY--HKVSAPLIAQQEEDPNAP-IDTDNLTQRLHNFTK-TYDLVIVEGAGGLCVP------IT------------- 148 (242)
T ss_dssp ---EEC--SSSSCHHHHHHHHCTTCC-CCHHHHHHHHHHGGG-TCSEEEEECCSCTTCB------SS-------------
T ss_pred ---EEE--CCCCChHHHHHHcCCCCc-CCHHHHHHHHHHHHh-cCCEEEEECCCCcccc------cc-------------
Confidence 000 001111111 11111001 123356777788876 8999999999873310 00
Q ss_pred HHhhhHhhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCe
Q 023886 178 KFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHN 257 (276)
Q Consensus 178 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g 257 (276)
. .. ...++.+.+. ..+++|+.++..++..+...++.+++.|++ .|
T Consensus 149 ----------~------~~--------------~~adlA~~l~----~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~G 193 (242)
T 3qxc_A 149 ----------L------EE--------------NMLDFALKLK----AKMLLISHDNLGLINDCLLNDFLLKSHQLD-YK 193 (242)
T ss_dssp ----------S------SC--------------BHHHHHHHHT----CEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EE
T ss_pred ----------c------cc--------------hHHHHHHHcC----CCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EE
Confidence 0 00 0001112222 348999999999999999999999999999 99
Q ss_pred EEEccccCCC
Q 023886 258 IIINQVLYDD 267 (276)
Q Consensus 258 ~vvN~~~~~~ 267 (276)
+|+|++.++.
T Consensus 194 vIlN~v~~~~ 203 (242)
T 3qxc_A 194 IAINLKGNNT 203 (242)
T ss_dssp EEECCCTTCC
T ss_pred EEEeCCCCcc
Confidence 9999997654
No 48
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.20 E-value=1.2e-09 Score=95.72 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=36.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
+.+++.+.|.+|+||||++.+||..++..|++|+++|+|.+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~ 145 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA 145 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH
Confidence 3456655567999999999999999999999999999998754
No 49
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.14 E-value=8.6e-10 Score=96.18 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=35.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAHN 69 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~~ 69 (276)
.+++.+.|.+|+||||++.+||..++. .|++|+++|+|++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~ 147 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI 147 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc
Confidence 345555577999999999999999995 899999999999754
No 50
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.98 E-value=1.2e-09 Score=97.60 Aligned_cols=44 Identities=30% Similarity=0.397 Sum_probs=35.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l 70 (276)
...++.++|++|+||||++.+|+..++..|+||+++|.||+.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~ 121 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR 121 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc
Confidence 44566778899999999999999999999999999999998764
No 51
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.42 E-value=9.5e-07 Score=78.36 Aligned_cols=44 Identities=27% Similarity=0.371 Sum_probs=36.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCCh
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l 70 (276)
...++.+.|++|+||||+..+|+..++..|.+|.++|.|++...
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~ 98 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV 98 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC
Confidence 34555667899999999999999999999999999999998654
No 52
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.31 E-value=3.4e-05 Score=71.23 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=37.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
...++.+.|.+|+||||+...||..+...|.+|++.+.|....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA 334 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccch
Confidence 3467777789999999999999999998889999999998653
No 53
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=98.23 E-value=2.2e-06 Score=78.02 Aligned_cols=69 Identities=19% Similarity=0.116 Sum_probs=52.7
Q ss_pred hhhccccccchhh-----hhcC-CceEEEEEeCCC---CchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccccC
Q 023886 9 DQELEIPEGSVRN-----ILEQ-DSLKWVFVGGKG---GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFT 79 (276)
Q Consensus 9 ~~~~~~~~~~l~~-----~~~~-~~~~i~v~s~kG---GvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~~~ 79 (276)
.|.|..++.++.. +-++ ..+.|+|+|..+ |+||||+++|||.+||+.|+||+++ =.+++++..||.+..
T Consensus 33 lE~YG~~kAKv~~~~l~~~~~~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi--LR~Psl~~~FGikgg 110 (557)
T 3pzx_A 33 VELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC--LREPSLGPSFGIKGG 110 (557)
T ss_dssp EEEBSSSCEEECHHHHHHTTTSCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE--ECCCCSHHHHHTCCC
T ss_pred HHHhhCeeEEecHHHhhhhhccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE--eCCCCccccCCCCCC
Confidence 4556666666432 2223 345666999999 9999999999999999999999999 346788899987654
No 54
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.14 E-value=6e-06 Score=73.59 Aligned_cols=50 Identities=18% Similarity=0.072 Sum_probs=40.7
Q ss_pred hhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 19 VRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 19 l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
|..++. + +..+++++.|++|+||||+|.++|..+++.|.+|++||++...
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~ 103 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 103 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 555554 1 2356788889999999999999999999999999999997543
No 55
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.02 E-value=3.2e-06 Score=69.60 Aligned_cols=50 Identities=18% Similarity=0.063 Sum_probs=38.2
Q ss_pred hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
++..+......++++.|.+|+||||+..+|+..+... ++|.+|+.|++.+
T Consensus 21 ~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~ 70 (221)
T 2wsm_A 21 NREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSK 70 (221)
T ss_dssp HHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCH
T ss_pred HHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCc
Confidence 3444433345566667899999999999999988655 8999999999754
No 56
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.00 E-value=1.1e-05 Score=66.21 Aligned_cols=42 Identities=19% Similarity=0.056 Sum_probs=35.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~ 71 (276)
...++.+.|++|+||||++.++|. ..|.+|+++|.+.+.+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~ 60 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSPE 60 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHH
Confidence 356788899999999999999998 668899999999855443
No 57
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.00 E-value=2.1e-05 Score=70.26 Aligned_cols=52 Identities=17% Similarity=0.093 Sum_probs=41.1
Q ss_pred chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
.|+.++. + +...++.+.|.+|+||||+|.++|..+++.|.+|++||++....
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~ 115 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD 115 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh
Confidence 3455554 1 22456777899999999999999999999999999999996543
No 58
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.99 E-value=1.7e-05 Score=64.39 Aligned_cols=39 Identities=18% Similarity=0.060 Sum_probs=34.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
..|++..|+| .||||.|..+|...+..|+||+++-....
T Consensus 29 g~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~Kg 67 (196)
T 1g5t_A 29 GIIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIKG 67 (196)
T ss_dssp CCEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred ceEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 4666777777 99999999999999999999999987764
No 59
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.94 E-value=4.7e-05 Score=67.03 Aligned_cols=43 Identities=28% Similarity=0.263 Sum_probs=38.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
.+..++.+.|..|+||||+...||..+...|.+|++++.|...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR 169 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence 4467787888999999999999999999999999999999754
No 60
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.77 E-value=7.3e-05 Score=66.36 Aligned_cols=51 Identities=18% Similarity=0.052 Sum_probs=41.0
Q ss_pred chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
.|..++. + +...++.+.|.+|+||||++.+++..+++.|.+|++||++...
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~ 101 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL 101 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 3555554 1 2346777889999999999999999999999999999998643
No 61
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.72 E-value=4e-05 Score=63.09 Aligned_cols=50 Identities=22% Similarity=0.129 Sum_probs=36.1
Q ss_pred hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
++..........+++.|.+||||||+..+|+..+... +++..|+.|++.+
T Consensus 29 ~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~ 78 (226)
T 2hf9_A 29 NRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAK 78 (226)
T ss_dssp HHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTH
T ss_pred HHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCCC
Confidence 4444333333444444889999999999999887655 7899999998744
No 62
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.70 E-value=0.00015 Score=63.12 Aligned_cols=41 Identities=29% Similarity=0.328 Sum_probs=35.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
..++.+.|.+|+||||+...||..+...|.+|++.+.|...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence 44565558999999999999999999888999999999754
No 63
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.63 E-value=6e-05 Score=60.35 Aligned_cols=40 Identities=30% Similarity=0.258 Sum_probs=35.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+..++++.|..|+||||++..||..+...|.+|.++|.|.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 3566788899999999999999999999999999999873
No 64
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.59 E-value=0.00025 Score=61.83 Aligned_cols=40 Identities=8% Similarity=0.042 Sum_probs=34.8
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecCCCCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTDPAHN 69 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D~~~~ 69 (276)
++.+.|.+|+||||++..++..+++. |.+|+.||......
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhh
Confidence 57888999999999999999999886 88999999875443
No 65
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.58 E-value=0.00029 Score=62.56 Aligned_cols=52 Identities=15% Similarity=0.051 Sum_probs=42.1
Q ss_pred chhhhhc-C--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 18 SVRNILE-Q--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 18 ~l~~~~~-~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
.|+.++. + +...++.+.|.+|+||||++.++|..++..|.+|++||......
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD 102 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence 4566665 2 23467888889999999999999999999999999999986544
No 66
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.57 E-value=0.0001 Score=58.54 Aligned_cols=40 Identities=18% Similarity=-0.050 Sum_probs=35.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
++++.++|..|+||||++..|+..|..+|++|.+|..|+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4556677788999999999999999999999999999986
No 67
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.45 E-value=0.00034 Score=58.06 Aligned_cols=35 Identities=20% Similarity=-0.034 Sum_probs=32.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII 62 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli 62 (276)
..+.++.|..|.||||.+..++..++..|++|+++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 46788899999999999999999999999999999
No 68
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.43 E-value=0.00027 Score=62.52 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=39.2
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA 67 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~ 67 (276)
|..++.+ +...++.+.|.+|+||||++.++|...+. .|.+|++||++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4555532 34578889999999999999999987654 5789999999875
No 69
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=97.39 E-value=0.0012 Score=58.29 Aligned_cols=37 Identities=16% Similarity=0.045 Sum_probs=31.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
..++.++..--+|||||++..|..++.++|.++..+-
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~ 188 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLA 188 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEe
Confidence 4566677778899999999999999999999999843
No 70
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.38 E-value=0.00017 Score=61.17 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=34.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+.++++.|-+|+||||+|..|+..|...|..++++|.|.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 456888899999999999999999999999999888873
No 71
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=97.37 E-value=0.0029 Score=62.42 Aligned_cols=38 Identities=11% Similarity=-0.062 Sum_probs=34.5
Q ss_pred EEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc
Q 023886 227 FVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL 264 (276)
Q Consensus 227 ~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~ 264 (276)
+|+|.....-.+..+.-..+.++..++++.|+|+|++.
T Consensus 234 VILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~ 271 (831)
T 4a0g_A 234 GILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHG 271 (831)
T ss_dssp EEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCS
T ss_pred EEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCc
Confidence 78898888888999999999999999999999999874
No 72
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.34 E-value=0.00025 Score=62.10 Aligned_cols=50 Identities=20% Similarity=0.198 Sum_probs=38.8
Q ss_pred chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC------CCcEEEEecCCC
Q 023886 18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~------G~kVlliD~D~~ 67 (276)
.+..++.+ +...++.+.|.+|+||||++.++|...+.. |.+|++||++..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 34445532 234678888999999999999999887655 789999999965
No 73
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.26 E-value=0.00047 Score=57.13 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=36.8
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA 67 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~ 67 (276)
|+.++.+ +...++.+.|.+|+||||++..+|...+. .+.+|+++|.+..
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~ 69 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT 69 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC
Confidence 4555532 23467788899999999999999986443 3678999999874
No 74
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.24 E-value=0.00026 Score=56.46 Aligned_cols=37 Identities=30% Similarity=0.274 Sum_probs=33.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++++.|-.|+||||++..|+..+...|+++..++.|
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 5678899999999999999999999899999988643
No 75
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.18 E-value=0.0019 Score=57.11 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=35.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
..++.+.|.+|+||||+.-.|+..+...|.+|.++..||+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 456677799999999999999999988899999999999754
No 76
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.10 E-value=0.00057 Score=56.69 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=36.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
..++.+.|.+|+||||++.++|..++..|.+|++++.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 4577888999999999999999999999999999999864
No 77
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.07 E-value=0.00056 Score=59.69 Aligned_cols=50 Identities=12% Similarity=0.156 Sum_probs=40.5
Q ss_pred chhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.|..++.+ .+..++++.|.+|+||||++.++|..++..|.+|+++++...
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s 107 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 107 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 34444421 335678889999999999999999999999999999999843
No 78
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=97.06 E-value=0.026 Score=52.72 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=37.0
Q ss_pred EEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886 29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (276)
Q Consensus 29 ~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~ 71 (276)
-|.|+.| -.|+|||++++.|+..|.++|+||..+=.||.-|..
T Consensus 5 ~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~d 48 (545)
T 1s1m_A 5 YIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVD 48 (545)
T ss_dssp EEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSC
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccCC
Confidence 4456635 889999999999999999999999999999876654
No 79
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.06 E-value=0.00034 Score=61.13 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=38.0
Q ss_pred chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHH------------hCC----CcEEEEecCCC
Q 023886 18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLA------------EVR----PSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la------------~~G----~kVlliD~D~~ 67 (276)
.+..++.+ +...++.+.|.+|+||||++.++|...+ ..| .+|++||++..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 34555532 3357888899999999999999998743 245 79999999975
No 80
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.05 E-value=0.0022 Score=56.43 Aligned_cols=43 Identities=30% Similarity=0.400 Sum_probs=37.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
....++.+.|.+|+||||+...|+..+...|.+|.++..|++.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 4456777889999999999999999988888899999999853
No 81
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.00 E-value=0.0017 Score=62.87 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=17.2
Q ss_pred EEEeCCCCchHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSIL 51 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~ 51 (276)
+.+.|++|+||||++-+|...
T Consensus 13 I~IiG~~~~GKTTL~~~Ll~~ 33 (704)
T 2rdo_7 13 IGISAHIDAGKTTTTERILFY 33 (704)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 455579999999999999653
No 82
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.95 E-value=0.00071 Score=61.95 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=40.8
Q ss_pred hhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 19 VRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 19 l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
|..++.+ .+..++++.|.+|+||||++.++|...+..|.+|+++++....
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK 237 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 4444432 3356788899999999999999999999999999999999643
No 83
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.93 E-value=0.0013 Score=52.28 Aligned_cols=41 Identities=20% Similarity=0.090 Sum_probs=35.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
+.++.++|..|+||||+...|...+...|++|..+..|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 45677888999999999999999999999999999988753
No 84
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.91 E-value=0.0011 Score=53.63 Aligned_cols=41 Identities=29% Similarity=0.210 Sum_probs=36.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
....++.+.|..|+||||++..|+..+...|.+|.+++.|.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 34577888899999999999999999988888999998885
No 85
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.91 E-value=0.0009 Score=59.00 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=40.9
Q ss_pred chhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.|..++.+ .+..++++.|.+|+||||++.++|..++..|.+|++++++..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms 85 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS 85 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 44555432 334678889999999999999999999999999999999854
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.90 E-value=0.0024 Score=66.93 Aligned_cols=52 Identities=19% Similarity=0.094 Sum_probs=43.1
Q ss_pred chhhhhc---CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 18 SVRNILE---QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 18 ~l~~~~~---~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
.|..++. =+..+++.+.|.+|+||||+|.++|...++.|.+|++||++....
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~ 424 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 424 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchH
Confidence 3555554 134678888999999999999999999999999999999997554
No 87
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.87 E-value=0.0013 Score=53.92 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=38.7
Q ss_pred hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++.....+....+++.|.+|+||||++..+|..+...|.++..++++.
T Consensus 43 l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 43 LKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp HHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 334443434566788899999999999999999999999999998753
No 88
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.85 E-value=0.002 Score=68.37 Aligned_cols=51 Identities=20% Similarity=0.081 Sum_probs=42.7
Q ss_pred chhhhhc---CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 18 SVRNILE---QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 18 ~l~~~~~---~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
.++.++. =+..+++.+.|.+|+|||++|.++|....++|.+|+.||++-..
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 4566665 23467888899999999999999999999999999999998543
No 89
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.80 E-value=0.00097 Score=56.03 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=33.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHh-----CCCcEEEEecCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAE-----VRPSVLIISTDP 66 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~-----~G~kVlliD~D~ 66 (276)
..+.++.+.|..|+||||+|..||..+.. .|++|+++|+|.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~ 65 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS 65 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc
Confidence 34567788899999999999999987764 367899999994
No 90
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.80 E-value=0.002 Score=55.82 Aligned_cols=42 Identities=26% Similarity=0.269 Sum_probs=36.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
...++.+-|..|+||||+...||..+...|.+|++.+.|...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 356777778999999999999999999888999999999764
No 91
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.77 E-value=0.0016 Score=53.32 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=35.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
..++.+.|.+|+||||++..++..++..|.+|++++.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 3567778999999999999999998888889999998864
No 92
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.74 E-value=0.0011 Score=52.68 Aligned_cols=37 Identities=32% Similarity=0.277 Sum_probs=31.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++++.|..|+||||++..||..+...|.+.-.+|.|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 4678899999999999999999999888666667654
No 93
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.74 E-value=0.0015 Score=53.23 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=36.1
Q ss_pred cCCceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCC
Q 023886 24 EQDSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDP 66 (276)
Q Consensus 24 ~~~~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~ 66 (276)
......++++.|..|+||||++..|+..+. ..|.++..+|.|.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 334456777889999999999999999998 7899999998663
No 94
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.73 E-value=0.0017 Score=58.64 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=36.8
Q ss_pred chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCC
Q 023886 18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~ 67 (276)
.+..++.+ ....++.+.|..|+||||++.+++..... .+.+|++||....
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 34455532 22467788899999999999999876653 4578999998864
No 95
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=96.70 E-value=0.053 Score=50.63 Aligned_cols=43 Identities=30% Similarity=0.332 Sum_probs=36.9
Q ss_pred EEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886 29 KWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (276)
Q Consensus 29 ~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~ 71 (276)
.|.|+.| -.|+|||++|+.|+..|.++|+||..+=.||.-|..
T Consensus 14 ~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~d 57 (550)
T 1vco_A 14 YVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNVD 57 (550)
T ss_dssp EEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCSS
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccccccC
Confidence 3456635 889999999999999999999999999999876654
No 96
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.69 E-value=0.0027 Score=56.39 Aligned_cols=42 Identities=26% Similarity=0.269 Sum_probs=36.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
...++.+-|..|+||||+...||..+...|.+|++.+.|...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 356777778999999999999999999888999999999764
No 97
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.69 E-value=0.0018 Score=52.14 Aligned_cols=37 Identities=32% Similarity=0.336 Sum_probs=32.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
..+++.|.+|+||||++..++..+...|.+|+.+++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 5677889999999999999999999999999988763
No 98
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.68 E-value=0.0047 Score=65.72 Aligned_cols=52 Identities=19% Similarity=0.094 Sum_probs=43.0
Q ss_pred chhhhhc---CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q 023886 18 SVRNILE---QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69 (276)
Q Consensus 18 ~l~~~~~---~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~ 69 (276)
.|..++. =++..++.+.|.+|+||||++.++|..+++.|.+|++||+.....
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~ 424 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 424 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH
Confidence 3555554 234578888999999999999999999999999999999997554
No 99
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.67 E-value=0.0021 Score=51.85 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=35.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
....++++.|..|+||||++..||..+...|..+..+|.|.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 34567788899999999999999999987788778889773
No 100
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.66 E-value=0.0016 Score=53.92 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=39.3
Q ss_pred chhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC
Q 023886 18 SVRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~ 67 (276)
.|+.++.+ +...++++.|.+|+|||++|.++|...+ +.|++|++++++..
T Consensus 18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred HHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 45666642 3356788899999999999999998765 55889999999853
No 101
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.65 E-value=0.001 Score=57.40 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=33.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
..++.++|-.|+||||+|..|+..+...|.++.+||+|.-.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 34677889999999999999999998888999999999644
No 102
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.64 E-value=0.0022 Score=50.69 Aligned_cols=39 Identities=28% Similarity=0.226 Sum_probs=33.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
..++++.|..|+||||++..|+..+...|..+..+|.|.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 345677799999999999999999888899998888764
No 103
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.59 E-value=0.0017 Score=51.44 Aligned_cols=36 Identities=19% Similarity=0.048 Sum_probs=31.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEe
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIIS 63 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD 63 (276)
...+++.|.+|+||||++..++..+. ..|.+|+.++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 46678889999999999999999998 7788888765
No 104
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.53 E-value=0.0024 Score=58.29 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=39.5
Q ss_pred chhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 023886 18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~ 67 (276)
.|..++.+ .+..++++.|.+|+||||++.++|...+. .|.+|+++++...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~ 240 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP 240 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 34444422 23467888899999999999999999997 5899999999843
No 105
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.52 E-value=0.0017 Score=60.24 Aligned_cols=50 Identities=8% Similarity=0.029 Sum_probs=40.5
Q ss_pred chhhhhcC-CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCC
Q 023886 18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPA 67 (276)
Q Consensus 18 ~l~~~~~~-~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~ 67 (276)
.|..++.+ ....++++.|.+|+||||++.++|..++.. |.+|++++++..
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 34455432 235678889999999999999999999987 999999999864
No 106
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.51 E-value=0.0029 Score=57.99 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=36.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~ 67 (276)
+..++++.|.+|+||||++.++|..++. .|.+|++++++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 3467888899999999999999999996 6899999999854
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.50 E-value=0.0051 Score=54.38 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=36.4
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhC------CCcEEEEecCCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPA 67 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~------G~kVlliD~D~~ 67 (276)
++.++.. +...++.+.|..|+||||++..++...+.. |.+|+.||....
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 4455432 335778888999999999999999877432 358899998754
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.47 E-value=0.0028 Score=50.77 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=31.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
++.++.|..|+||||.+..++..+...|++|+++-
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46788899999999999999999999999999974
No 109
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.43 E-value=0.0056 Score=49.99 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=32.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHh------CCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAE------VRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~------~G~kVlliD~D~~ 67 (276)
..++.+.|..|+||||++..++..+.. .+.+++.++.+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 467788899999999999999986654 3557888988753
No 110
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.42 E-value=0.004 Score=49.44 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=29.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
++++.|-.|+||||++..|+..+...|..|+-.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4677899999999999999999988898877555
No 111
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.41 E-value=0.002 Score=50.62 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=27.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++++|-.|+||||++..||..+ |.....+|.|
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence 568899999999999999988765 4456666776
No 112
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.40 E-value=0.0027 Score=59.66 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=35.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
..++++.|..|+||||++..|+..+...|+++.++|.|.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 466778899999999999999999999999999999883
No 113
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.38 E-value=0.0037 Score=53.60 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=35.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDP 66 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~ 66 (276)
....++++.|.+|+||||++.++|..++.. |.+|++++.+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 335677888999999999999999999876 88999999875
No 114
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.37 E-value=0.0021 Score=56.98 Aligned_cols=56 Identities=18% Similarity=0.115 Sum_probs=42.1
Q ss_pred hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC--------CCcEEEEecC
Q 023886 10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV--------RPSVLIISTD 65 (276)
Q Consensus 10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~--------G~kVlliD~D 65 (276)
++++.+...+...........+++.|.+|+||||++..++..+... +..++.+++.
T Consensus 27 ~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 27 DILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 3444444455555555556678899999999999999999998765 7888888864
No 115
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.35 E-value=0.0047 Score=48.40 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=28.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHh-------CCCcEEEEec
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAE-------VRPSVLIIST 64 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~-------~G~kVlliD~ 64 (276)
....+++.|.+|+|||+++..++..+.. .|.++..+++
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 3445677899999999999999999876 3455555544
No 116
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.33 E-value=0.003 Score=55.71 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=42.1
Q ss_pred hccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC------CCcEEEEecCCCCC
Q 023886 11 ELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHN 69 (276)
Q Consensus 11 ~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~------G~kVlliD~D~~~~ 69 (276)
+++.+...+...+.......+++.|.+|+||||++..++..+... +..++.+++....+
T Consensus 27 ~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 91 (387)
T 2v1u_A 27 ELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET 91 (387)
T ss_dssp HHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC
Confidence 334444444444444556678889999999999999999998765 66788888765443
No 117
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.33 E-value=0.013 Score=61.64 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=45.8
Q ss_pred chhhhhcC---CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC--hhHHhcccc
Q 023886 18 SVRNILEQ---DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN--LSDAFQQRF 78 (276)
Q Consensus 18 ~l~~~~~~---~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~--l~~~l~~~~ 78 (276)
.|+.++.. +.-+|+-+.|..|+||||+|..++....++|.++++||+....+ ....+|.+.
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~ 1483 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDI 1483 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCG
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCH
Confidence 45555543 22478888889999999999999999889999999999985433 345555543
No 118
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.30 E-value=0.0066 Score=48.95 Aligned_cols=36 Identities=8% Similarity=-0.160 Sum_probs=33.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
.++.++.|.-|.||||.+..+|..+..+|+||+++-
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 467899999999999999999999999999999995
No 119
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.28 E-value=0.0056 Score=48.76 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=29.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
++++.|-.|+||||++..|+..+...|.+|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 46778999999999999999999999999976654
No 120
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.25 E-value=0.0045 Score=48.42 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=24.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAE 54 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~ 54 (276)
....-+++.|..|+|||+++..++..+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 33445688899999999999999999876
No 121
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.24 E-value=0.0046 Score=47.67 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=33.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
....+++.|..|+||||++..++..+...|+++..++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 345677789999999999999999998889888888765
No 122
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.20 E-value=0.0051 Score=53.36 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=33.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D 65 (276)
..-+++.|..|+|||+++..+|..+. ..|++|+.+.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 35577789999999999999999999 999999998764
No 123
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=96.16 E-value=0.12 Score=43.20 Aligned_cols=44 Identities=27% Similarity=0.373 Sum_probs=37.4
Q ss_pred eEEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886 28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (276)
Q Consensus 28 ~~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~ 71 (276)
+-|.++.| -.|.||-.+|+.+|..|..+|+||-.+=.||.-|..
T Consensus 24 KyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlNvD 68 (294)
T 2c5m_A 24 KYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINID 68 (294)
T ss_dssp EEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBCCCC
T ss_pred EEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCceeec
Confidence 33446666 699999999999999999999999999999987654
No 124
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.16 E-value=0.054 Score=48.53 Aligned_cols=27 Identities=33% Similarity=0.247 Sum_probs=22.2
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRP 57 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~ 57 (276)
+.+-|..|+||||+.-.|.....+.|+
T Consensus 6 I~iiG~~~~GKSTLi~~L~~~~~~~g~ 32 (397)
T 1d2e_A 6 VGTIGHVDHGKTTLTAAITKILAEGGG 32 (397)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS
T ss_pred EEEEeCCCCCHHHHHHHHhChhhhcCc
Confidence 456689999999999999887766654
No 125
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.16 E-value=0.0063 Score=49.19 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=30.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
+++++.|-.|+||||++..|+..+...|..|..+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 46778899999999999999999999999986554
No 126
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.16 E-value=0.0058 Score=49.19 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=29.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
+++++.|-.|+||||++..||..+...| +|...+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~ 39 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEW 39 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEET
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecC
Confidence 5678889999999999999999998777 7755443
No 127
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.13 E-value=0.0049 Score=48.29 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=26.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++++.|.+|+||||+|..|+.. ......||.|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d 35 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRD 35 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHH
Confidence 457889999999999999998862 2346677775
No 128
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0056 Score=53.41 Aligned_cols=59 Identities=8% Similarity=-0.084 Sum_probs=45.6
Q ss_pred hhhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC-------CCcEEEEecCCC
Q 023886 9 DQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV-------RPSVLIISTDPA 67 (276)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-------G~kVlliD~D~~ 67 (276)
.++++.++..+...+......-++++|++|+|||+++..++..+.+. +.+++-|++-..
T Consensus 26 e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 26 VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 45677777778888777777778999999999999999999999753 235666665443
No 129
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.08 E-value=0.0033 Score=55.37 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=40.2
Q ss_pred ccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC---CCcEEEEecCC
Q 023886 12 LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV---RPSVLIISTDP 66 (276)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~---G~kVlliD~D~ 66 (276)
++.+...+...+.......+++.|.+|+||||++..++..+... +..++.+++..
T Consensus 29 ~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 29 IRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp HHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred HHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 33333444444334556678889999999999999999988765 77888888653
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.07 E-value=0.0059 Score=53.95 Aligned_cols=58 Identities=21% Similarity=0.128 Sum_probs=41.6
Q ss_pred ccccccchhhhhcCCceE--EEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCCCCC
Q 023886 12 LEIPEGSVRNILEQDSLK--WVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDPAHN 69 (276)
Q Consensus 12 ~~~~~~~l~~~~~~~~~~--i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~~~~ 69 (276)
++.+...+.....+.... .+++.|..|+||||++..++..+... +..++.+++....+
T Consensus 26 ~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 26 LQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp HHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred HHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 333444444443333334 78889999999999999999988777 68899999766554
No 131
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.05 E-value=0.0046 Score=55.16 Aligned_cols=56 Identities=20% Similarity=0.096 Sum_probs=39.6
Q ss_pred ccccch-hhhhcC--CceEEEEE--eCCCCchHHHHHHHHHHHHHhC------CCcEEEEecCCCCC
Q 023886 14 IPEGSV-RNILEQ--DSLKWVFV--GGKGGVGKTTCSSILSILLAEV------RPSVLIISTDPAHN 69 (276)
Q Consensus 14 ~~~~~l-~~~~~~--~~~~i~v~--s~kGGvGKTT~a~~lA~~la~~------G~kVlliD~D~~~~ 69 (276)
.+...+ .....+ .....+++ .|.+|+||||++..++..+... +..++.+++.+..+
T Consensus 33 ~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 33 ALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp HHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred HHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 333344 444334 34567777 9999999999999999988764 67888888755444
No 132
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.04 E-value=0.015 Score=50.27 Aligned_cols=19 Identities=42% Similarity=0.406 Sum_probs=15.5
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+.+.|.+||||||+.-.|.
T Consensus 13 v~ivG~~nvGKSTLin~l~ 31 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLL 31 (308)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 4556899999999988764
No 133
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.97 E-value=0.0061 Score=57.54 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=34.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCC-CcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVR-PSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G-~kVlliD~D~ 66 (276)
..++++.|-.|+||||+|..|+..|..+| +++.++|.|.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 46778889999999999999999999888 8999999874
No 134
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.96 E-value=0.006 Score=51.30 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=26.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++++.|..|+||||+|..||..+ | ..+++.|.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~---~--~~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET---G--WPVVALDR 34 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---C--CCEEECCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC---C--CeEEeccH
Confidence 568899999999999999998765 3 34678875
No 135
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.95 E-value=0.0041 Score=50.11 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=28.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
++++++.|-.|+||||++..|+..+ | ..++|.|.-
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcC
Confidence 4567888999999999999998877 4 446788753
No 136
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.95 E-value=0.0074 Score=56.30 Aligned_cols=39 Identities=21% Similarity=0.139 Sum_probs=35.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+.++++.|-+|+||||+|..||..|...+.++.+++.|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D 72 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVG 72 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence 356788999999999999999999999889999999988
No 137
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.94 E-value=0.0071 Score=57.52 Aligned_cols=40 Identities=28% Similarity=0.219 Sum_probs=35.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
...++++.|-.|+||||++..|+..|.+.|..+..+|.|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 4567888899999999999999999999999999998763
No 138
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.92 E-value=0.0065 Score=48.92 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=29.1
Q ss_pred hcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 23 ~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+......++++.|..|+||||++..|+..+ | ...+|.|.-
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~ 63 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAF 63 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGG
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEccccc
Confidence 334445678888999999999999999877 5 456787753
No 139
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.89 E-value=0.0054 Score=51.47 Aligned_cols=38 Identities=29% Similarity=0.458 Sum_probs=30.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
..+.++++.|.+|+||||++..|+..+ |..+.++|.|.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~ 67 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDS 67 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence 446788999999999999999998765 34567889884
No 140
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.89 E-value=0.0042 Score=49.15 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=25.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++++.|-.|+||||++..||..+ |. -.+|.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l---~~--~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT---KR--ILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CC--CEEECh
Confidence 4567788999999999999999776 43 356766
No 141
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.88 E-value=0.021 Score=53.23 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=33.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
..++.+.|..|+||||++..++..+...|.+++.++...
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee 319 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE 319 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 467788899999999999999999888899998887653
No 142
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=95.86 E-value=0.0091 Score=55.81 Aligned_cols=41 Identities=12% Similarity=-0.035 Sum_probs=27.6
Q ss_pred eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccCC
Q 023886 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYD 266 (276)
Q Consensus 225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~~ 266 (276)
+.+++|.-+......++...+..+...++++ -+|+|++-..
T Consensus 107 D~~IlVvDa~~g~~~~t~~~~~~~~~~~ipi-ivviNK~Dl~ 147 (529)
T 2h5e_A 107 DCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI-LTFMNKLDRD 147 (529)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTTTTCCE-EEEEECTTSC
T ss_pred CEEEEEEeCCccchHHHHHHHHHHHHcCCCE-EEEEcCcCCc
Confidence 5566666655444556677777777778874 7788887543
No 143
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.84 E-value=0.0058 Score=52.48 Aligned_cols=37 Identities=30% Similarity=0.435 Sum_probs=29.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
....+++++|.+|+||||++..|+..+ +.....||.|
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D 67 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDND 67 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Confidence 346788999999999999999998654 2346778887
No 144
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.81 E-value=0.0068 Score=48.09 Aligned_cols=33 Identities=36% Similarity=0.440 Sum_probs=26.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+++++.|-.|+||||++..|+..+ |.. ++|.|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l---~~~--~i~~D 37 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL---RLP--LLSKD 37 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc---CCe--EecHH
Confidence 4678889999999999999999876 544 45655
No 145
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.80 E-value=0.011 Score=47.75 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=30.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
+++++.|-.|+||||++..|+..+...+..|.++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 46788899999999999999999998898886554
No 146
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=95.76 E-value=0.13 Score=47.46 Aligned_cols=43 Identities=30% Similarity=0.468 Sum_probs=37.1
Q ss_pred EEE-EEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886 29 KWV-FVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (276)
Q Consensus 29 ~i~-v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~ 71 (276)
|.+ |+.| -.|.||-.+|+.++..|..+|+||-.+=.||.-|..
T Consensus 4 k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnvd 48 (535)
T 3nva_A 4 KYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINVD 48 (535)
T ss_dssp EEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSSS
T ss_pred eEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceeec
Confidence 445 5555 689999999999999999999999999999987754
No 147
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.75 E-value=0.0066 Score=47.14 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=26.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++++.|-.|+||||++..||..+ |.. .+|.|.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l---~~~--~i~~d~ 34 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL---KYP--IIKGSS 34 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH---CCC--EEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCe--eecCcc
Confidence 467889999999999999988765 443 578884
No 148
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=95.75 E-value=0.13 Score=45.18 Aligned_cols=37 Identities=19% Similarity=-0.042 Sum_probs=31.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
.+++.++..--++||||++..|...+.++|.+|..+-
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~ 205 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLA 205 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEc
Confidence 4566667667789999999999999999999998854
No 149
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.67 E-value=0.0061 Score=47.50 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=25.6
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++++.|-.|+||||++..||..+ |. -++|.|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL---GY--EFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CC--cEEccc
Confidence 457888999999999999998876 43 367776
No 150
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.66 E-value=0.013 Score=51.11 Aligned_cols=41 Identities=34% Similarity=0.420 Sum_probs=34.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHh--CCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~--~G~kVlliD~D~~ 67 (276)
.+.++.+.|..|+||||++..|+..+.. .+.+|.++..|..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 4567888899999999999999988874 3568999999953
No 151
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.66 E-value=0.013 Score=48.42 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=37.1
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecCCCCC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTDPAHN 69 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D~~~~ 69 (276)
....+++++.|-.|+||||.+..|+..|.. .|++|.++.-.|.++
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t 63 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGT 63 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCC
Confidence 344567788899999999999999999999 999999866667644
No 152
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.64 E-value=0.016 Score=46.85 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=35.4
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+...++.+.|..|+||||++..|+..+...|.++..|..|..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 446777888999999999999999999877878888888753
No 153
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.63 E-value=0.0039 Score=50.43 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=31.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
++++.|..|+||||++..|+..+...|.+|.++.-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 56788999999999999999999988989888764
No 154
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.62 E-value=0.0052 Score=48.25 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=25.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++.|..|+||||++..||..+ | ..++|.|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL---D--LVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---C--CCEEccc
Confidence 47778999999999999998766 3 4567776
No 155
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.56 E-value=0.015 Score=49.42 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=31.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhC----------CCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEV----------RPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~----------G~kVlliD~D~~ 67 (276)
..++.+.|.+|+||||++..++..++.- +.+|++++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 4567788999999999999999977642 357888887653
No 156
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.54 E-value=0.017 Score=50.05 Aligned_cols=38 Identities=32% Similarity=0.362 Sum_probs=30.1
Q ss_pred cCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 24 EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 24 ~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
..+..++++++|..|+||||+|..||..+ ..-+|.+|.
T Consensus 6 ~~~~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 43 (316)
T 3foz_A 6 KASLPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDS 43 (316)
T ss_dssp -CCCCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred cCCCCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence 34456788999999999999999998764 356788885
No 157
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.54 E-value=0.022 Score=46.61 Aligned_cols=37 Identities=8% Similarity=-0.126 Sum_probs=33.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
..+|.|..|.-|.||||.+..++..+..+|+||+++-
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3567899999999999999999999999999999985
No 158
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.53 E-value=0.007 Score=48.69 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=26.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++++.|..|+||||++..||..+ |.. .+|.|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l---~~~--~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL---NVP--FIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc---CCC--EEcch
Confidence 4567888999999999999999877 444 45666
No 159
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.52 E-value=0.015 Score=45.40 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=28.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
..++++.|..|+||||++..|+..+ | ..++|.|.-
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCccc
Confidence 4678888999999999999998766 4 456788753
No 160
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.51 E-value=0.01 Score=55.12 Aligned_cols=39 Identities=13% Similarity=-0.021 Sum_probs=34.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHh-C-CCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAE-V-RPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~-~-G~kVlliD~D~ 66 (276)
..++++.|-.|+||||++..||..|.. + |+.+-++|.|.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 356788999999999999999999997 6 47888999997
No 161
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.50 E-value=0.0078 Score=46.58 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=22.1
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVL 60 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVl 60 (276)
++++.|..|+||||++..| .+.|..++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 5788899999999999988 55677654
No 162
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.49 E-value=0.02 Score=46.88 Aligned_cols=39 Identities=28% Similarity=0.362 Sum_probs=32.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
+++++.|-.|+||||.+..|+..|...|++|.+.. .|.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~-~p~~ 45 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR-EPGG 45 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE-SSCS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc-CCCC
Confidence 45788899999999999999999999999997654 4543
No 163
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.47 E-value=0.0056 Score=46.73 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=36.1
Q ss_pred hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.++..++..++...... .-+++.|..|+|||++|..++......+..+. +++..
T Consensus 8 ~~~~~~~~~~~~~a~~~--~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~ 61 (145)
T 3n70_A 8 EWINQYRRRLQQLSETD--IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELT 61 (145)
T ss_dssp HHHHHHHHHHHHHTTCC--SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred HHHHHHHHHHHHHhCCC--CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence 34444444444433222 22577899999999999999887777677777 87764
No 164
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.47 E-value=0.011 Score=46.78 Aligned_cols=33 Identities=27% Similarity=0.161 Sum_probs=25.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
..++++.|..|+||||+|..||..+ |. ..||.|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 3567888999999999999998765 43 457766
No 165
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.46 E-value=0.0047 Score=48.84 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=25.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++.|-.|+||||+|..||..+ |.. ++|.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g~~--~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL---GVG--LLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCC--EEeCc
Confidence 46778999999999999998766 443 57877
No 166
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.45 E-value=0.011 Score=50.76 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=32.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCC--CcEEEE-ecCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVR--PSVLII-STDP 66 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G--~kVlli-D~D~ 66 (276)
+...++.+.|..|+||||++..|+..+...| .++..+ ..|.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~ 72 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD 72 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccc
Confidence 4467778889999999999999999998765 445444 9985
No 167
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.44 E-value=0.0058 Score=53.38 Aligned_cols=34 Identities=26% Similarity=0.218 Sum_probs=29.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
.+++++.|.+|+||||+|.++|.. .|.+|+.+++
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 356688999999999999999986 6789999998
No 168
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.44 E-value=0.012 Score=46.58 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=27.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++++++.|..|+||||++..|+..+ | ...+|.|
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 35678888999999999999998765 3 4567776
No 169
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.44 E-value=0.016 Score=50.23 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=33.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
..-+++.|.+|+||||++..++..+...|.++..++++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 34577889999999999999999998889999999875
No 170
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.41 E-value=0.0066 Score=48.75 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=28.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCc--EEEEecCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPS--VLIISTDP 66 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~k--VlliD~D~ 66 (276)
.+++.|.+|+|||+++..++..+...+.+ ++-++...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 37888999999999999999998776654 44444433
No 171
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.41 E-value=0.013 Score=51.45 Aligned_cols=34 Identities=26% Similarity=0.194 Sum_probs=29.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
++++++|..|+||||+|..||..+. +.+|++|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 5788999999999999999988653 788999953
No 172
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.38 E-value=0.011 Score=47.87 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=29.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH-----hCC-CcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLA-----EVR-PSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la-----~~G-~kVlliD~D 65 (276)
+.|.++.|.+|+|||+.|..++..++ +.| ++|.+..+|
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 34678889999999999999877765 678 666666555
No 173
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.36 E-value=0.012 Score=46.73 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=26.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
..++++.|..|+||||++..||..+ .| .-.+|+|
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l--~g--~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAEL--DG--FQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence 4567888999999999999888752 24 5567887
No 174
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.36 E-value=0.01 Score=47.49 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=27.5
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
+++++.|-.|+||||++..||..+ .|.++..++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 457778999999999999998877 4677877664
No 175
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.34 E-value=0.012 Score=50.44 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=30.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
+.++.+++.|.+|+|||++|..+|..+ |.+++.+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 345677788999999999999999887 778888875
No 176
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.34 E-value=0.011 Score=47.41 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=27.9
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+.++++++.|..|+||||++..|+..+ | ...+|+|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~---g--~~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY---S--FVHLSAG 47 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS---S--CEEEEHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc---C--ceEEeHH
Confidence 3446678889999999999999998654 4 3567776
No 177
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.26 E-value=0.018 Score=49.76 Aligned_cols=42 Identities=29% Similarity=0.335 Sum_probs=33.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHH--hCCCcEEEEecCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLA--EVRPSVLIISTDPA 67 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la--~~G~kVlliD~D~~ 67 (276)
....++.+.|..|+||||++..|+..+. -.+.+|.+|++|-.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 4456777889999999999999998876 34557999999853
No 178
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.26 E-value=0.014 Score=46.26 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=27.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
...++++.|..|+||||++..||.. .+...+.+|.|
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 3467888899999999999988764 34445667766
No 179
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=95.24 E-value=0.067 Score=47.98 Aligned_cols=29 Identities=31% Similarity=0.224 Sum_probs=23.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRP 57 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~ 57 (276)
.-+.+.|..|+||||+...|...+.+.|+
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~ 40 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENP 40 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCT
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCc
Confidence 34567799999999999999988777764
No 180
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.16 E-value=0.0086 Score=47.72 Aligned_cols=33 Identities=30% Similarity=0.269 Sum_probs=26.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
..++++.|..|+||||++..||..+ | ...+|.|
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence 3567888999999999999998876 3 4567776
No 181
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.16 E-value=0.021 Score=53.84 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=32.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
..++++.|-+|+||||++..++..+...|++|+++-
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 357788999999999999999999999999999874
No 182
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.16 E-value=0.016 Score=46.50 Aligned_cols=34 Identities=35% Similarity=0.257 Sum_probs=26.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
...++++.|..|+||||+|..||..+ |.. ++|.|
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 34567888999999999999998876 444 46665
No 183
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.12 E-value=0.02 Score=45.18 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=29.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+++.+.|..|+||||++..|+..+...|.++--|-.|..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 345555699999999999999999998888777766643
No 184
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.10 E-value=0.022 Score=54.45 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=32.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
+.++.|.+|+|||++.+.+...+.+.|.+||++-.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 67899999999999999999999999999998764
No 185
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=95.10 E-value=0.065 Score=51.66 Aligned_cols=40 Identities=10% Similarity=0.019 Sum_probs=25.5
Q ss_pred eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY 265 (276)
Q Consensus 225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~ 265 (276)
+.+++|.-+......++...+..+.+.++++ -+|+|++-.
T Consensus 102 D~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~ 141 (691)
T 1dar_A 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPR-IAFANKMDK 141 (691)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHHTTCCE-EEEEECTTS
T ss_pred CEEEEEEECCCCcchhhHHHHHHHHHcCCCE-EEEEECCCc
Confidence 4566666555444455666677777777776 477888744
No 186
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.09 E-value=0.026 Score=51.56 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=30.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCC-cEEEEec
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRP-SVLIIST 64 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~-kVlliD~ 64 (276)
.+++.|.+|+||||++..++..|...|+ +|+++-.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 6788999999999999999999999987 7777743
No 187
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.03 E-value=0.018 Score=50.32 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=28.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.+++++.|..|+||||++..||..+ ...+||+|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccc
Confidence 4578899999999999999998754 367889884
No 188
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.97 E-value=0.028 Score=48.13 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=37.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCC---hhHHhcc
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN---LSDAFQQ 76 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~---l~~~l~~ 76 (276)
...+++.|..|+||||+|..+|..+...+..+..+|+..... ....+|.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 98 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGA 98 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCC
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCC
Confidence 356788899999999999999999988777899999874322 3455543
No 189
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.95 E-value=0.011 Score=47.17 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=26.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+.++++.|..|+||||++..||.. |. .++|+|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~----g~--~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW----GY--PVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT----TC--CEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC----CC--EEEcccH
Confidence 466788899999999999888864 54 4678883
No 190
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.92 E-value=0.011 Score=47.42 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=24.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++.+.|..|+||||++..||. + | +-++|+|
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L---G--AYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T---T--CEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C---C--CEEEEcc
Confidence 567789999999999998887 4 5 5567776
No 191
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.91 E-value=0.036 Score=44.66 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=29.8
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
+++-|--|+||||.+..|+..|.+.|++|.+..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 567789999999999999999999999998764
No 192
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.91 E-value=0.018 Score=44.69 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=26.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+.++++.|-.|+||||++..||..| |.. ++|+|
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l---g~~--~id~D 39 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL---KLE--VLDTD 39 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh---CCC--EEECh
Confidence 36678889999999999999988765 444 46776
No 193
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.90 E-value=0.038 Score=45.65 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=29.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
..++++.|-.|+||||++..|+..+.. |.+|+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 456788899999999999999999988 88886543
No 194
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.86 E-value=0.034 Score=45.78 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=33.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH-hCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLA-EVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la-~~G~kVlliD~D~~ 67 (276)
..++.+.|..|+||||+...++.... ..+.++++++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 46677789999999999999997666 67788999987743
No 195
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.83 E-value=0.017 Score=45.41 Aligned_cols=32 Identities=28% Similarity=0.270 Sum_probs=24.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++++.|-.|+||||++..||..+ |. -.+|.|
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~---~~--~~~~~d 43 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS---GL--KYINVG 43 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh---CC--eEEEHH
Confidence 457788999999999999998776 43 445655
No 196
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.81 E-value=0.11 Score=44.70 Aligned_cols=19 Identities=42% Similarity=0.406 Sum_probs=16.3
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+.+-|.+||||||+.-.|.
T Consensus 10 V~ivG~~nvGKSTLln~l~ 28 (301)
T 1wf3_A 10 VAIVGKPNVGKSTLLNNLL 28 (301)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5666999999999998875
No 197
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.81 E-value=0.011 Score=46.02 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=24.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.++++.|..|+||||++..||..+ | ...+|.|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l---~--~~~id~d 36 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSD 36 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT---T--CEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh---C--CCEEecc
Confidence 457788999999999999888765 3 3567776
No 198
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.79 E-value=0.015 Score=46.89 Aligned_cols=37 Identities=27% Similarity=0.221 Sum_probs=28.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+..++.+.|..|+||||++..|+..+. .+.+++.|..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 356677889999999999888775331 5889999953
No 199
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.78 E-value=0.033 Score=46.37 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=32.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCc-EEEEecCCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPS-VLIISTDPAH 68 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~k-VlliD~D~~~ 68 (276)
+++++.|-.|+||||.+..|+..|...|.+ |.+. -.|.+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~-rep~~ 67 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT-REPGG 67 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE-ESSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee-cCCCC
Confidence 567888999999999999999999999999 5444 45543
No 200
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.72 E-value=0.019 Score=45.50 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=26.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+.++++.|-.|+||||++..||..+ |. -.+|.|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l---~~--~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY---GY--THLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CC--eEEcHH
Confidence 3467788999999999999998766 44 356776
No 201
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=94.69 E-value=0.044 Score=49.87 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=32.9
Q ss_pred CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhccc
Q 023886 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77 (276)
Q Consensus 36 kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~~ 77 (276)
+-|+||||++..|+.+|.+.|+++.+.= .|+++.-.||.+
T Consensus 55 PaGEGKtTttiGL~~aL~~lgk~~~~~l--RePSlGP~FGiK 94 (543)
T 3do6_A 55 PAGEGKTTTSIGLSMSLNRIGKKSIVTL--REPSLGPTLGLK 94 (543)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTCCEEEEE--CCCCHHHHHHSC
T ss_pred CCCCCccchHHHHHHHHHhcCCeeEEEE--ecCCCCCcCCcc
Confidence 7799999999999999999999986543 566666677665
No 202
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.67 E-value=0.016 Score=44.82 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=24.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++.|..|+||||++..|+..+ |.. ++|+|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~~~--~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---NIP--FYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCC--EEECc
Confidence 36778999999999999998866 443 46776
No 203
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=94.66 E-value=0.12 Score=49.95 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=18.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSIL 51 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~ 51 (276)
+.+.+.|.+|+||||+.-.|...
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~ 33 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYY 33 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 34555679999999999998754
No 204
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.62 E-value=0.03 Score=46.29 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=30.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhC----CCcEEEEecCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEV----RPSVLIISTDPAH 68 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~----G~kVlliD~D~~~ 68 (276)
.+++++.|-.|+||||.+..|+..|... |.+|.+.- .|.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r-ep~~ 68 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR-EPGG 68 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE-SSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec-CCCC
Confidence 3567888999999999999999999988 99997543 4543
No 205
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.61 E-value=0.032 Score=44.96 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=29.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
..++.+.|..|+||||++..|+..+.. ++.+++.|+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 456677789999999999999887643 6889999863
No 206
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.60 E-value=0.028 Score=46.80 Aligned_cols=34 Identities=26% Similarity=0.044 Sum_probs=26.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+.++++.|..|+||||+|..|+..+ | ...+++|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~---g--~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH---C--YCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEEecH
Confidence 35567888999999999999998766 4 4556665
No 207
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.59 E-value=0.029 Score=46.07 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+..+|+|+-|.+|+||+|.|..||..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346788888999999999999998765
No 208
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.55 E-value=0.013 Score=45.93 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEE
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVL 60 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVl 60 (276)
+.++++.|-.|+||||++..||..+ |..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence 3567888999999999999887654 55554
No 209
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.53 E-value=0.032 Score=43.89 Aligned_cols=33 Identities=33% Similarity=0.178 Sum_probs=25.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
..++++.|..|+||||++..||..+ |. ..+|.|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l---~~--~~i~~d 36 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL---GF--KKLSTG 36 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence 3457888999999999999998765 43 456766
No 210
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.52 E-value=0.034 Score=44.67 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=28.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+...++.+.|..|+||||++..|+..+ | .-+||+|.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~ 45 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDR 45 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcH
Confidence 335667778999999999999988754 5 56789883
No 211
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.46 E-value=0.026 Score=48.23 Aligned_cols=34 Identities=24% Similarity=0.181 Sum_probs=26.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++++.|-+|+||||++..|+..+ . ....||.|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~--~--~~~~i~~D 35 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN--P--GFYNINRD 35 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS--T--TEEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC--C--CcEEeccc
Confidence 3568899999999999999988632 2 35677776
No 212
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.45 E-value=0.021 Score=46.56 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=24.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+++.|..|+||||++..||..+ |. -.+|.|
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 37 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY---GL--AHLSTG 37 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---Cc--eEEehh
Confidence 46667999999999999999877 44 345664
No 213
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.43 E-value=0.043 Score=44.86 Aligned_cols=40 Identities=23% Similarity=0.493 Sum_probs=32.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCC-cEEEEecCCCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRP-SVLIISTDPAHN 69 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~-kVlliD~D~~~~ 69 (276)
+++++-|-.|+||||.+..|+..|...|. .|.+ --.|.++
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~-~rep~~t 44 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF-TREPGGT 44 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE-EESSCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCccee-eeCCCCC
Confidence 45778899999999999999999999998 6644 4455543
No 214
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.38 E-value=0.045 Score=46.78 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=30.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCC----cEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRP----SVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~----kVlliD~D 65 (276)
..-+++.|.+|+|||++|..+|..+...+. .++.++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 345678899999999999999999987665 66666643
No 215
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.36 E-value=0.036 Score=50.45 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=33.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhC--CCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~--G~kVlliD~D 65 (276)
..-+++.|.+|+||||++..+|..+... |.+++.+++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4557888999999999999999999876 8899998875
No 216
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.36 E-value=0.029 Score=45.68 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=25.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
..+++.|..|+||||++..||..+ |. -.+|.|
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 36 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF---HA--AHLATG 36 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence 457788999999999999998876 33 456765
No 217
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.30 E-value=0.032 Score=48.98 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=28.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.+++++.|..|+||||++..||..+ ..-+||+|..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence 3588999999999999999998643 4678999963
No 218
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.29 E-value=0.03 Score=47.72 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=26.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+.++++.|..|+||||+|..|+ . .|. -+||+|
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~---lg~--~~id~D 106 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-N---LGA--YIIDSD 106 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-H---HTC--EEEEHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-H---CCC--cEEehh
Confidence 36778888999999999999998 3 365 457887
No 219
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.04 E-value=0.079 Score=43.89 Aligned_cols=37 Identities=16% Similarity=-0.045 Sum_probs=33.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
+.+|.|..|.-|.||||-+..++.....+|+||+++-
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3567899999999999999999999999999999997
No 220
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.03 E-value=0.027 Score=45.93 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=24.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.++++.|..|+||||++..||..+. . ..+|.|
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~---~--~~i~~d 37 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ---L--AHISAG 37 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC---C--EECCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---C--ceecHH
Confidence 4577889999999999999998763 2 445654
No 221
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.01 E-value=0.048 Score=47.37 Aligned_cols=34 Identities=38% Similarity=0.373 Sum_probs=27.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.++++++|..|+||||+|..||..+ ..-+|++|.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCc
Confidence 4578899999999999999998654 357888884
No 222
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.96 E-value=0.025 Score=45.25 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=25.8
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++.+.|..|+||||++..||..+ | +-++|.|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l---g--~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL---G--VPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--Cceeccc
Confidence 67888999999999999998766 3 5567887
No 223
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.89 E-value=0.044 Score=44.26 Aligned_cols=30 Identities=27% Similarity=0.197 Sum_probs=23.4
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.|..|+||||+|..||..+ |. ..+|.|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY---EI--PHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CC--cEeeHH
Confidence 5668999999999999998765 43 446665
No 224
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.89 E-value=0.066 Score=44.41 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=30.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhC-----CCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEV-----RPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~-----G~kVlliD~D~ 66 (276)
...++.+.|..|+||||++..|+..+... .+++.+++.|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 34667777999999999999999877321 34677888874
No 225
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.87 E-value=0.026 Score=46.20 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=25.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+.++++.|..|+||||++..||..+ |. ..+|.|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 39 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF---EL--KHLSSG 39 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence 3457788999999999999988754 43 456665
No 226
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.75 E-value=0.059 Score=45.29 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=28.5
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
.....-+++.|.+|+|||++|..+|.. .|..+..+++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~---~~~~~~~i~~ 97 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE---SNFPFIKICS 97 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH---HTCSEEEEEC
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH---hCCCEEEEeC
Confidence 444566788899999999999999886 3566666654
No 227
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.72 E-value=0.044 Score=43.58 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHH
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
++++.|-.|+||||++..||..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 467789999999999999998773
No 228
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.72 E-value=0.043 Score=44.43 Aligned_cols=30 Identities=23% Similarity=0.165 Sum_probs=23.5
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.|..|+||||++..||..+ |..+ +|+|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---g~~~--i~~d 32 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY---GIPQ--ISTG 32 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH---CCCE--EEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCeE--EeHH
Confidence 5677899999999999999876 5544 5554
No 229
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.71 E-value=0.041 Score=46.06 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=31.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
-+++.|..|+|||++|..++..+...+..+..+++...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 36678999999999999999887777778888887643
No 230
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.61 E-value=0.051 Score=44.71 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=25.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
..+++.|..|+||||++..||..+ | ...+|+|
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 48 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF---C--VCHLATG 48 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence 456778999999999999999876 3 3456765
No 231
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.61 E-value=0.078 Score=42.98 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=29.6
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+.+++=|--|+||||.+..|+..|. +|++|.+.- .|.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~-eP~ 39 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTR-EPG 39 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEE-SST
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEee-CCC
Confidence 4567778999999999999999996 588887653 343
No 232
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.60 E-value=0.049 Score=44.57 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=24.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++.|..|+||||++..||..+ |. -.+++|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l---g~--~~i~~d 32 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY---SL--AHIESG 32 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--eEEchH
Confidence 36788999999999999999877 44 346664
No 233
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.59 E-value=0.064 Score=50.91 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=29.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHh----CCCcEEEE
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLII 62 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~----~G~kVlli 62 (276)
.+++++.|.+|+||||++..+...+.+ .|.+|+++
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 467889999999999999999988874 46688875
No 234
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.55 E-value=0.079 Score=45.02 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=28.5
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.-+++.|.+|+|||++|..+|..+ +.++..+++..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~ 85 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATK 85 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence 345677999999999999999877 66788888753
No 235
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.51 E-value=0.11 Score=45.07 Aligned_cols=42 Identities=33% Similarity=0.374 Sum_probs=34.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhC-C-CcEEEEecCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV-R-PSVLIISTDPA 67 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G-~kVlliD~D~~ 67 (276)
+...++.+.|..|+||||++..|+..+... | .+|.+|..|+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 446778888999999999999999988754 5 57888888854
No 236
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.48 E-value=0.087 Score=46.92 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=31.1
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.|..|+||||+...++..+...|.+|+++|-+
T Consensus 38 ~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56679999999999999999998889999998765
No 237
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.44 E-value=0.1 Score=43.19 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=28.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.+-+++.|.+|+|||++|..+|..+ |..+..+++..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~ 74 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAE 74 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHH
Confidence 3446788999999999999998865 56777777753
No 238
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.36 E-value=0.034 Score=44.73 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
.+++++.|..|+||||++..|+..+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3457888999999999999998766
No 239
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.35 E-value=0.07 Score=42.74 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=24.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.++.+.|..|+||||++..||. .|.. ++|+|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~----lg~~--~id~d~ 34 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD----LGVP--LVDADV 34 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence 4677889999999999988875 4654 468873
No 240
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.34 E-value=0.085 Score=48.33 Aligned_cols=39 Identities=18% Similarity=0.090 Sum_probs=32.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
...++++.|-.|+||||++..||..+...+..+..++.|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d 76 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence 345678889999999999999999998888888777755
No 241
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.31 E-value=0.048 Score=44.10 Aligned_cols=30 Identities=27% Similarity=0.226 Sum_probs=22.9
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++.|..|+||||+|..||..+ | ...+|.|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~d 32 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY---G--IPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS---S--CCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---C--CcEEeHH
Confidence 5667999999999999987654 4 3456665
No 242
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.15 E-value=0.054 Score=44.11 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=26.2
Q ss_pred chhhhhcCCc-eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 18 SVRNILEQDS-LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 18 ~l~~~~~~~~-~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
.++.++.+-+ ..-+++.|.+|+||||+|..+|..+
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445544432 3457888999999999999999887
No 243
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.07 E-value=0.074 Score=49.38 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=31.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
.+.+++.|.+|+||||+|..+|..+ |..++-+++....
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~ 114 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVR 114 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcc
Confidence 4678889999999999999998876 7888888765433
No 244
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.06 E-value=0.1 Score=46.80 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=27.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.++++++|..|+||||+|..||..+. .-+|++|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 45788999999999999999998774 34688774
No 245
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.04 E-value=0.071 Score=49.99 Aligned_cols=39 Identities=31% Similarity=0.345 Sum_probs=32.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~D~ 66 (276)
..++++.|..|+||||++..||..+... |.++.++|.|.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 4667778999999999999999999865 45788899874
No 246
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.01 E-value=0.069 Score=43.30 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
.+++|+.++||.|+||+|+|--+...+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 356788889999999999998876544
No 247
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.00 E-value=0.036 Score=50.09 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=29.8
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
...++++++.|-+|+||||+|..|+..+ ....||.|.-.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~ 293 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLG 293 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGSC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchHH
Confidence 3446788999999999999999887543 35677887643
No 248
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.99 E-value=0.1 Score=49.66 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=30.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEec
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIIST 64 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~ 64 (276)
.+.++.|.+|+||||+.+.+...+.+ .+.+|+++-.
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 46788899999999999999999887 6788887643
No 249
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.93 E-value=0.052 Score=43.21 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=27.0
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++.|-.|+||||.|..||.. |.+|+.|+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence 567789999999999998854 77899999864
No 250
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.92 E-value=0.064 Score=50.13 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=28.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHH----HHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSI----LLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~----~la~~G~kVlliD~D~ 66 (276)
..+++.+.|-||+||||+|..++. .....-.-++-|+...
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~ 194 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSG 194 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECC
Confidence 468888899999999999998885 2222222456666544
No 251
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.79 E-value=0.076 Score=48.67 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=26.0
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHh-------CCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAE-------VRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~-------~G~kVlliD~D 65 (276)
+++.|.+|+|||+++..+|..+.. .|.++.-+|+.
T Consensus 204 ~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 467799999999999999999865 35666666554
No 252
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.73 E-value=0.07 Score=43.11 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
.+++++.|..|+||||++..|+..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4678889999999999999887654
No 253
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.70 E-value=0.12 Score=41.84 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=25.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
..++++.|..|+||||++..|+. .|. -++|+|
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~----lg~--~~id~D 35 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD----LGI--NVIDAD 35 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH----TTC--EEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH----cCC--EEEEcc
Confidence 35678889999999999988875 454 567886
No 254
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.69 E-value=0.29 Score=44.56 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=16.4
Q ss_pred EEEEeCCCCchHHHHHHHHH
Q 023886 30 WVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA 49 (276)
.+++-|.+||||||+.-.|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~ 44 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIA 44 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHE
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 45666999999999988774
No 255
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.68 E-value=0.087 Score=41.56 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=24.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.++++.|..|+||||++..|+. ..+. ...+|.|
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~---~~~g-~~~i~~d 35 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA---QLDN-SAYIEGD 35 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH---HSSS-EEEEEHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc---ccCC-eEEEccc
Confidence 5678889999999999999975 2222 2456655
No 256
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.67 E-value=0.081 Score=44.62 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=26.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+-+++.|.+|+|||++|..+|..+ +..+..+++.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~ 85 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGS 85 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehH
Confidence 4456778999999999999887654 6667766654
No 257
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.56 E-value=0.1 Score=42.07 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=24.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVR 56 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G 56 (276)
...+++.|.+|+||||++..++..+...+
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~ 73 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCET 73 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 35778899999999999999998887543
No 258
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.55 E-value=0.092 Score=42.62 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=19.4
Q ss_pred EEEEeCCCCchHHHHHHHHHHHH
Q 023886 30 WVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
++++-|.+|+||+|.|..||..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 35667999999999999999765
No 259
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.39 E-value=0.17 Score=43.69 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=33.1
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHhcc
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ 76 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l~~ 76 (276)
+++.|.+|+|||++|..+|..+ |..+..+.+.+.....+.+|.
T Consensus 49 vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCTTCCHHHHHEE
T ss_pred EEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCCCCChhhcCCc
Confidence 6778999999999999998765 566777777766555666654
No 260
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=92.29 E-value=0.18 Score=50.90 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=34.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHH--HH-hCCCcEEEEecCCCCCh
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSIL--LA-EVRPSVLIISTDPAHNL 70 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~--la-~~G~kVlliD~D~~~~l 70 (276)
...+++.+.|-||+||||+|..++.. .. .....++.++.+...+.
T Consensus 148 d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~ 195 (1221)
T 1vt4_I 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195 (1221)
T ss_dssp CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSH
T ss_pred CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCH
Confidence 34678889999999999999999853 33 33557999998866554
No 261
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.23 E-value=0.14 Score=50.20 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=30.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEe
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIIS 63 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD 63 (276)
.+.++.|.+|+||||+.+.++..+.+ .|.+|+++-
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a 407 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 407 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEc
Confidence 46788999999999999999999987 578888764
No 262
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.22 E-value=0.13 Score=45.54 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=27.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
-+++.|..|+|||++|..+|..+ |..+..+|+..
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~~ 107 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHL---DIPIAISDATS 107 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CCCEEEecchh
Confidence 46778999999999999999876 67777777653
No 263
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=92.22 E-value=0.1 Score=48.99 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=30.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHH---Hh-CCCcEEEEecCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILL---AE-VRPSVLIISTDPA 67 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~l---a~-~G~kVlliD~D~~ 67 (276)
...+++.+.|-||+||||+|..++... .. ....|..++.+..
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 346788999999999999999988643 22 2235787777644
No 264
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.07 E-value=0.057 Score=46.27 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=26.1
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCC--cEEEEec
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRP--SVLIIST 64 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~--kVlliD~ 64 (276)
+++.|.+|+||||++..+|..+...+. .++-+++
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 778899999999999999998865443 3444443
No 265
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.04 E-value=0.093 Score=41.26 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
.+++++.|..|+||||++..|+..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3567888999999999999988765
No 266
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.03 E-value=0.12 Score=44.57 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=30.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
....+++++|..|+|||+++..+|..+ |.+++-+++..
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~ 83 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSD 83 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTT
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccc
Confidence 345678999999999999999998765 67788777643
No 267
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.02 E-value=0.18 Score=41.86 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=25.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
-+++.|..|+||||++..+|..+ +..+..++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~ 79 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGS 79 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSC
T ss_pred eEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHH
Confidence 36778999999999999998765 4556666543
No 268
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.00 E-value=0.11 Score=43.02 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+.++++.|..|+||||++..||..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567788999999999999999776
No 269
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=91.99 E-value=0.054 Score=50.51 Aligned_cols=40 Identities=13% Similarity=-0.102 Sum_probs=29.8
Q ss_pred eEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886 225 TTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY 265 (276)
Q Consensus 225 ~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~ 265 (276)
+.+++|.-+......++...+..+...++++ -+|+|++-.
T Consensus 107 D~allVvDa~~g~~~~t~~~~~~~~~~~iPi-ivviNK~Dl 146 (528)
T 3tr5_A 107 DSALMVIDAAKGVEPRTIKLMEVCRLRHTPI-MTFINKMDR 146 (528)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHTTTCCE-EEEEECTTS
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEeCCCC
Confidence 6677777666656667778888888888876 678898754
No 270
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.94 E-value=0.24 Score=39.85 Aligned_cols=37 Identities=16% Similarity=-0.045 Sum_probs=33.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
+.++.|+.|.-|.||||--...+.....+|+||+++.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 3568899999999999999999988889999999996
No 271
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.93 E-value=0.16 Score=43.44 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=32.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHHh
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF 74 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~l 74 (276)
..+++.|..|+|||++|..++..+ |.++..+++.........+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~~~l~ 81 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKPGDLA 81 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCChHHHH
Confidence 456788999999999999998866 5677777776554444433
No 272
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=91.90 E-value=0.33 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=17.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA 49 (276)
++.+.+-|..++||||+.-.|.
T Consensus 21 m~~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 21 MANVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEEEESTTSSHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3356777899999999988775
No 273
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.89 E-value=0.049 Score=46.61 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=27.2
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCC--cEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRP--SVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~--kVlliD~D 65 (276)
+++.|.+|+||||++..+|..+...+. .++-+++.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 788899999999999999999865433 45555544
No 274
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=91.82 E-value=0.24 Score=41.72 Aligned_cols=49 Identities=4% Similarity=-0.134 Sum_probs=38.1
Q ss_pred hhhhhcC--CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 19 VRNILEQ--DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 19 l~~~~~~--~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
|+.++.+ +..+++.++|-+|.||||++..++...+++|.+++++..+-.
T Consensus 10 LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~ 60 (260)
T 3bs4_A 10 LDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYP 60 (260)
T ss_dssp HHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred HHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 4555543 335666677777777779999999999999999999999943
No 275
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.81 E-value=0.24 Score=41.60 Aligned_cols=40 Identities=18% Similarity=0.319 Sum_probs=30.3
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEec
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIST 64 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~ 64 (276)
-.+..++.+.|..|+||||+...++..+... ..+|.+.+-
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 3445677888999999999999999888654 446665543
No 276
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.79 E-value=0.11 Score=44.92 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=30.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
..+++++|..|+||||+...|... ..|+|+.+|.-|.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~--~~~~~~aVi~~d~ 40 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEF 40 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh--cCCCcEEEEEecC
Confidence 567888999999999998887754 2689999998775
No 277
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.77 E-value=0.13 Score=41.74 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=23.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++.+.|..|+||||++..|+..+ | +-.+|.|
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~---g--~~~~d~g 37 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL---Q--WHLLDSG 37 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCcccCc
Confidence 46677999999999999988755 3 3456765
No 278
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.76 E-value=0.073 Score=46.36 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=27.8
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++.|..|+||||++..+|..+...+.++.++..+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 677899999999999999999875544444555543
No 279
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=91.76 E-value=0.36 Score=40.61 Aligned_cols=46 Identities=28% Similarity=0.484 Sum_probs=38.0
Q ss_pred eEEE-EEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChhHH
Q 023886 28 LKWV-FVGG-KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA 73 (276)
Q Consensus 28 ~~i~-v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~~~ 73 (276)
+|.+ ++.| -.|.||-.+|+.+|..|..+|+||-++=+||.-|..-.
T Consensus 23 ~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD~G 70 (295)
T 2vo1_A 23 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAG 70 (295)
T ss_dssp CEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC--
T ss_pred ceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceecCCC
Confidence 4445 5555 88999999999999999999999999999998775433
No 280
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=91.73 E-value=0.28 Score=47.31 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=24.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
...+|++ -|..|+||||+.-.|. |.+++.++.+|.
T Consensus 68 ~~~~V~V-vG~~naGKSSLlNaLl------g~~~~~v~~~p~ 102 (695)
T 2j69_A 68 GVFRLLV-LGDMKRGKSTFLNALI------GENLLPSDVNPC 102 (695)
T ss_dssp CCEEEEE-ECCTTSCHHHHHHHHH------TSSCSCCCCCTT
T ss_pred CCCEEEE-ECCCCCCHHHHHHHHh------CCCCCCCCCCCC
Confidence 3455554 4899999999988776 667666655554
No 281
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.72 E-value=0.17 Score=43.95 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=27.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+-+++.|.+|+|||++|..+|..+ .+..+..+++.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~ 80 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSS 80 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECC
T ss_pred CceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhH
Confidence 3556777999999999999999876 35567767664
No 282
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.57 E-value=0.12 Score=41.19 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
..++++.|..|+||||++..|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3467788999999999999888765
No 283
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.56 E-value=0.25 Score=43.55 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=31.9
Q ss_pred hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEe
Q 023886 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIS 63 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD 63 (276)
++.+...+ .-++.+.|..|+||||+...++..+... |.+++.++
T Consensus 115 l~~l~~~~-~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 115 FKRVSDVP-RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp HHHHHHCS-SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHhCC-CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 44444333 3477888999999999999999888765 66665544
No 284
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.56 E-value=0.13 Score=50.89 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=29.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHh-------CCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAE-------VRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~-------~G~kVlliD~D 65 (276)
-+++.|.+|+||||++..+|..+.. .|.++..+|+.
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 235 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG 235 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH
Confidence 3567799999999999999999876 47788888765
No 285
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.41 E-value=0.24 Score=43.91 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=30.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhC-CCcEEEEec
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEV-RPSVLIIST 64 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~-G~kVlliD~ 64 (276)
.+..++.+.|..|+||||+...|+..+... ..+|+.++-
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 345677788999999999999999988765 456777763
No 286
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.24 E-value=0.21 Score=43.10 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=28.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.++++.|..|+||||++..++..+ +.+++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchh
Confidence 478899999999999999988765 34688898764
No 287
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.23 E-value=0.31 Score=39.89 Aligned_cols=40 Identities=13% Similarity=-0.100 Sum_probs=32.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEE--ecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLII--STDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlli--D~D~~ 67 (276)
-.|.++.|--|.||||.....+..+..+|++|+++ ..|..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R 69 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDR 69 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCc
Confidence 46778888999999999999999999999999999 44543
No 288
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.19 E-value=0.15 Score=42.31 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=25.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.++.+.|..|+||||++..||..+ | ...+|.|
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g 41 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTG 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---C--CCcccCC
Confidence 457788999999999999998776 3 4567776
No 289
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.10 E-value=0.21 Score=49.01 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=31.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVlliD~D 65 (276)
.+.++.|.+|+|||++.+.+...+.+ .+.+||++-.-
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 46788899999999999999988876 68899988543
No 290
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.07 E-value=0.18 Score=43.20 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=26.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
..+.+++.|.+|+||||+|..+|..+ +...+.+++
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~ 82 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKG 82 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEh
Confidence 34567778999999999999998764 455555553
No 291
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.06 E-value=0.21 Score=42.31 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=26.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+-+++.|.+|+||||+|..+|..+ +....-+++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~ 88 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAA 88 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEEST
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHH
Confidence 4556788999999999999988755 5566666654
No 292
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.96 E-value=0.19 Score=44.19 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=26.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.-+++.|.+|+|||++|..+|..+ |....-+++-
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~~ 85 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLL---DVPFTMADAT 85 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCCEEEechH
Confidence 346678999999999999999876 6667666653
No 293
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.95 E-value=0.1 Score=41.70 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=17.7
Q ss_pred EEEEeCCCCchHHHHHHHHHH
Q 023886 30 WVFVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~ 50 (276)
.++++|..|+||||+...|..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999877644
No 294
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.92 E-value=0.35 Score=41.82 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=25.9
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHh---CCCcEEEEec
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAE---VRPSVLIIST 64 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~---~G~kVlliD~ 64 (276)
+++.|.+|+||||++..+|..+.. ...++.-++.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 778899999999999999999863 2334544443
No 295
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.73 E-value=0.18 Score=44.50 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=26.5
Q ss_pred chhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHH
Q 023886 18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 18 ~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
.+...+.......+++.|..|+||||++..||..+.
T Consensus 14 ~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 14 LLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344444444445567789999999999999998775
No 296
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.68 E-value=0.16 Score=40.35 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
.++.+.|..|+||||++..|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 467788999999999999988764
No 297
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.67 E-value=0.28 Score=42.35 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=26.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
.+-+++.|.+|+|||++|..+|..+ +..+..+++
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 3456778999999999999998764 566777765
No 298
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.65 E-value=0.23 Score=43.66 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=27.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+-+++.|..|+|||++|..+|..+ |..+..+++.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~ 151 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS---GATFFSISAS 151 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehH
Confidence 4456777999999999999998654 6777777764
No 299
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.57 E-value=0.13 Score=44.36 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=38.5
Q ss_pred hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.++..+...+..+.... .-+++.|..|+|||++|..++......+..++.+++..-
T Consensus 9 ~~~~~~~~~~~~~a~~~--~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 9 PAMQHLLNEIAMVAPSD--ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp HHHHHHHHHHHHHCSTT--SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred HHHHHHHHHHHHHhCCC--CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 34444444444443222 235678999999999999999877777788888887643
No 300
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.49 E-value=0.25 Score=43.42 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=25.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
-+++.|.+|+|||++|..+|..+ |..+..+++
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~ 117 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 117 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeH
Confidence 35666999999999999999876 566666654
No 301
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.46 E-value=0.69 Score=42.85 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=29.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHH-HHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILS-ILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA-~~la~~G~kVlliD~D~ 66 (276)
...++.+.|..|+||||++..++ ..+...|..++.|+...
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 34667777999999999999964 23333366688888765
No 302
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=90.43 E-value=0.086 Score=44.93 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=27.1
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCC--cEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRP--SVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~--kVlliD~D 65 (276)
+++.|..|+|||+++..+|..+...+. .++-+++.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 778899999999999999998865433 45555554
No 303
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.43 E-value=0.31 Score=43.99 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=33.7
Q ss_pred hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++.++. .+..++.+.|..|+||||+...++..+.....+|..++-+
T Consensus 159 L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 159 FRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp HHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred HHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 344443 4456788889999999999999988876555567766533
No 304
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.39 E-value=0.19 Score=40.44 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
.++++++|..|+||||+...|+..+
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 5678889999999999999887543
No 305
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.36 E-value=0.17 Score=44.05 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
..+++.|.+|+||||++..+|..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 557788999999999999999877
No 306
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.21 E-value=0.11 Score=41.86 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=25.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++++.|..|+||||++..||..+ | .-++|.|.
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~---g--~~~~~~d~ 36 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL---S--MIYVDTGA 36 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT---T--CEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--CceecCCh
Confidence 47788999999999998887654 4 45678773
No 307
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.19 E-value=0.14 Score=40.38 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=24.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHh-CCCcEE
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAE-VRPSVL 60 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~-~G~kVl 60 (276)
+++.+.|..|+||||+...|+..+.. .|..+-
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~ 34 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVS 34 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEee
Confidence 45778899999999999999887753 344443
No 308
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.13 E-value=0.29 Score=44.10 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=31.6
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCCChh
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~~l~ 71 (276)
+++-|..|+|||+....+...+.+.|.+|+++| |.+...
T Consensus 56 ~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~D--pkge~~ 94 (437)
T 1e9r_A 56 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD--PNGDML 94 (437)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE--ETTHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe--CCCchh
Confidence 556689999999998888888888999999987 445443
No 309
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.08 E-value=0.23 Score=40.75 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=25.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
..++.+.|..|+||||++..||..+ | ...+|.|
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l---g--~~~~d~d 48 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF---G--FTYLDTG 48 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---C--CceecCC
Confidence 4567778999999999999888755 4 4567877
No 310
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.02 E-value=0.38 Score=46.68 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=32.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+++.|.+|+|||++|..+|..+...+..+.-||+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s 558 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS 558 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEech
Confidence 467789999999999999999998888889999886
No 311
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.02 E-value=0.2 Score=40.55 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=24.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+.+++.|..|+||||+|..|+ ++|. -+|..|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La----~~g~--~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELV----QRGH--RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHH----TTTC--EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHH----HhCC--eEEecc
Confidence 3557788999999999887665 5566 566777
No 312
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.00 E-value=0.17 Score=41.67 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
+++++.|-.|+||||++..|+..+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4577789999999999999998773
No 313
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=89.88 E-value=0.87 Score=43.56 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
.+.+.+-|.+|+||||+.-.|....
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCChHHHHHHHHHHhc
Confidence 3445555779999999999988543
No 314
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.78 E-value=0.25 Score=39.03 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=19.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCc
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPS 58 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~k 58 (276)
-+++.|..|+||||+|..|.. +|++
T Consensus 18 gvli~G~SGaGKStlal~L~~----rG~~ 42 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID----RGHQ 42 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH----TTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHH----cCCe
Confidence 367779999999999887764 6764
No 315
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.77 E-value=0.38 Score=43.51 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=28.6
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++=+...|.+|+|||++|.++|..+ |..++.|++.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~ 240 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGS 240 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecc
Confidence 345557778999999999999998765 5677777654
No 316
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.76 E-value=0.053 Score=41.05 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=25.3
Q ss_pred hhccccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHH
Q 023886 10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSIL 51 (276)
Q Consensus 10 ~~~~~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~ 51 (276)
+.+..++..+....... . -+++.|..|+|||++|..++..
T Consensus 11 ~~~~~l~~~~~~~~~~~-~-~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 11 AAIQEMNREVEAAAKRT-S-PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp HHHHHHHHHHHHHHTCS-S-CEEEEEETTCCHHHHHGGGCCT
T ss_pred HHHHHHHHHHHHHhCCC-C-cEEEECCCCccHHHHHHHHHHh
Confidence 34444455554443322 2 2566899999999998887754
No 317
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.33 E-value=0.22 Score=41.41 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
..++.+.|..|+||||++..||..|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3466777999999999999998554
No 318
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.33 E-value=0.26 Score=42.39 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=27.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.++++.|..|+||||++..++..+ | ++.++++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeec
Confidence 578889999999999999987653 3 88888764
No 319
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.25 E-value=0.24 Score=43.31 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAE 54 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~ 54 (276)
+.+++.|.+|+|||++|..+|..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 56788899999999999999998853
No 320
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.24 E-value=0.21 Score=45.51 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=24.9
Q ss_pred hhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+...+......-+++.|.+|+||||+|..+|..+
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 3444444444457888999999999999998764
No 321
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.21 E-value=0.3 Score=38.91 Aligned_cols=26 Identities=42% Similarity=0.470 Sum_probs=22.8
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVR 56 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G 56 (276)
+.+.|..|+||||+...++..+...|
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCChHHHHHHHHHhhcccCC
Confidence 56679999999999999999888667
No 322
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.15 E-value=0.56 Score=40.32 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=34.0
Q ss_pred chhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhC---CCcEEEEecC
Q 023886 18 SVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV---RPSVLIISTD 65 (276)
Q Consensus 18 ~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~---G~kVlliD~D 65 (276)
.+++.+........++.|..|+||||+|..+|..+... ...++.++.+
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~ 58 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 58 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence 35555554445677889999999999999999864322 3467777764
No 323
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=89.12 E-value=3.1 Score=42.53 Aligned_cols=29 Identities=28% Similarity=0.173 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVR 56 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G 56 (276)
..-+++-|..++||||+.-.|.....+.|
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G 324 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTY 324 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHS
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhcccc
Confidence 34456778999999999999987665554
No 324
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=89.02 E-value=0.3 Score=38.49 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=19.8
Q ss_pred EEEeCCCCchHHHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la 53 (276)
+.+.|..|+||||+...++..+.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45679999999999999998873
No 325
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.01 E-value=0.22 Score=41.63 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=25.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.++++.|..|+||||++..||..+ |. -.+|.|
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l---g~--~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL---GY--TFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc---CC--cEEeCc
Confidence 457778999999999999999876 33 466766
No 326
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=89.00 E-value=0.69 Score=41.26 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=15.3
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+.+-|..|+||||+...|.
T Consensus 11 I~vvG~~~~GKSTLi~~L~ 29 (403)
T 3sjy_A 11 IGVVGHVDHGKTTLVQAIT 29 (403)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4556899999999977764
No 327
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.96 E-value=0.24 Score=39.62 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=20.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
+++++.|..|+||||+...|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4567889999999999999987653
No 328
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=88.92 E-value=0.33 Score=39.84 Aligned_cols=34 Identities=15% Similarity=0.041 Sum_probs=27.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
..|+.++|..|+||||++..||..| |.. ++|.|.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l---g~~--~~d~~~ 47 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL---GIH--FYDDDI 47 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH---TCE--EECHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc---CCc--EEcHHH
Confidence 4578889999999999999999776 444 578663
No 329
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.78 E-value=0.4 Score=47.26 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=33.5
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
..+++.|..|+|||++|..+|..+...+..++.||+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 626 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 45678899999999999999999988888899998874
No 330
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.59 E-value=0.16 Score=46.48 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=32.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCC-cEEEEecCCCCChhH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRP-SVLIISTDPAHNLSD 72 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~-kVlliD~D~~~~l~~ 72 (276)
.++.+-|..|+||||+...|+..+...+- +++++|.|+..++..
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~ 183 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFT 183 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeee
Confidence 34445589999999999999988765544 667788887554433
No 331
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.57 E-value=0.42 Score=41.19 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=26.7
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.-+++.|..|+|||++|..+|.. .|..+..+++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~---~~~~~~~~~~~~ 90 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE---MSANIKTTAAPM 90 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH---TTCCEEEEEGGG
T ss_pred CeEEEECcCCCCHHHHHHHHHHH---hCCCeEEecchh
Confidence 34678899999999999998765 356666666643
No 332
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.53 E-value=0.31 Score=47.36 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.2
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHh
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAE 54 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~ 54 (276)
+++.|.+|+|||++|..+|..+..
T Consensus 204 vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHS
T ss_pred eEEECCCCCCHHHHHHHHHHHHhc
Confidence 567799999999999999999854
No 333
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.33 E-value=0.39 Score=43.57 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=27.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+-+++.|.+|+|||++|..+|..+ .+..++.+++.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~ 202 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSS 202 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHH
Confidence 3556777999999999999999875 35566666654
No 334
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=88.33 E-value=0.29 Score=44.50 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
+-+++.|.+|+|||++|..+|..+.
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4466789999999999999998874
No 335
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.29 E-value=0.29 Score=39.97 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
..++++.|..|+||||+...|+..+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45788899999999999998887653
No 336
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.17 E-value=0.37 Score=42.01 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAE 54 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~ 54 (276)
...+++.|..|+||||++..+|..+..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456788999999999999999988753
No 337
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.14 E-value=0.37 Score=48.90 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=32.1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHh----CCCcEEEEecCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAE----VRPSVLIISTDPA 67 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~----~G~kVlliD~D~~ 67 (276)
...+++.+.|-||+||||+|..++..... ....|..++....
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 45678888899999999999998876532 2346888887653
No 338
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.92 E-value=0.29 Score=40.43 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=22.8
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
+++.|..|+||||++..+|..+. ...+.++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~ 81 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR---VPFITAS 81 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhC---CCEEEee
Confidence 67789999999999999987652 3344454
No 339
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.62 E-value=0.19 Score=41.85 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.6
Q ss_pred EEEeCCCCchHHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+++.|.+|+|||++|..+|..+
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6678999999999999998865
No 340
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.60 E-value=0.36 Score=39.47 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=27.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
...++.+-|..|+||||++..|+.. |.+|.+..-+
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 3567788899999999998888765 5678777554
No 341
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.49 E-value=0.3 Score=42.37 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.6
Q ss_pred EEEeCCCCchHHHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la 53 (276)
+++.|..|+||||++..+|..+-
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 77789999999999999999764
No 342
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.44 E-value=0.53 Score=36.97 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=22.9
Q ss_pred ccchhhhhcCCceEEEEEeCCCCchHHHHHHHHH
Q 023886 16 EGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 16 ~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA 49 (276)
..-++.++..+..+|+++ |.+||||||+...+.
T Consensus 18 ~~~~~~~~~~~~~ki~v~-G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 18 GSLFSRIFGKKQMRILMV-GLDAAGKTTILYKLK 50 (192)
T ss_dssp CCGGGGTTTTSCEEEEEE-ESTTSSHHHHHHHHC
T ss_pred HHHHHHhccCCccEEEEE-CCCCCCHHHHHHHHH
Confidence 334455555566666665 689999999988763
No 343
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.37 E-value=0.3 Score=39.22 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=25.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.|+.++|--|+||||++..||..| |.. ++|.|
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l---g~~--~~D~~ 38 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY---NIP--LYSKE 38 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT---TCC--EECHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh---CcC--EECHH
Confidence 467888999999999999988766 555 44643
No 344
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.32 E-value=0.41 Score=39.07 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=26.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
.+++++.|-.|+||||.+..|+..|.. ++.++-
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ 37 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLK 37 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEE
Confidence 356788899999999999999998865 454443
No 345
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.29 E-value=0.6 Score=45.24 Aligned_cols=28 Identities=25% Similarity=0.276 Sum_probs=23.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEV 55 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~ 55 (276)
..-+++.|.+|+|||+++..+|..+...
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 3445778999999999999999988753
No 346
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.28 E-value=0.14 Score=42.90 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
.++++++-|-.|+||||++..|+..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35677888999999999999998776
No 347
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=87.18 E-value=0.56 Score=42.64 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=25.4
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
+++.|.+|+||||+|..||..+ |...+.+|+
T Consensus 53 iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~ 83 (444)
T 1g41_A 53 ILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (444)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred EEEEcCCCCCHHHHHHHHHHHc---CCCceeecc
Confidence 6667899999999999988765 667777776
No 348
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=87.16 E-value=0.49 Score=41.03 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=24.8
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAE 54 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~ 54 (276)
++.....++.|..|+|||++|..+|..+-.
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 344556788899999999999999998864
No 349
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.06 E-value=0.73 Score=44.62 Aligned_cols=33 Identities=30% Similarity=0.339 Sum_probs=28.4
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
-+++.|.+|+|||++|..+|..+ |....-+|+.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s 522 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMS 522 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHh---cCCEEEEech
Confidence 46778999999999999999988 6778888875
No 350
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=86.99 E-value=0.48 Score=36.57 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=24.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVR 56 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G 56 (276)
++..++.+.|..|+||||+...++..+...|
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G 61 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQG 61 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTTCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhCCCCC
Confidence 4456777889999999999999998883334
No 351
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.95 E-value=0.41 Score=37.34 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=15.8
Q ss_pred EEEEeCCCCchHHHHHHHHH
Q 023886 30 WVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA 49 (276)
-+++-|.+|+||||+...|.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 34555899999999988775
No 352
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=86.75 E-value=0.64 Score=41.18 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=27.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+-+++.|..|+|||++|..+|.. .|..+..+++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~~ 182 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISAA 182 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeHH
Confidence 345678899999999999988654 46777777764
No 353
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=86.67 E-value=0.46 Score=39.46 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=21.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcE
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSV 59 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kV 59 (276)
.++.++|+.|+||||+|.-|+.. .|..+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---SCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHh---cCCeE
Confidence 46778899999999999877543 46554
No 354
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=86.63 E-value=0.38 Score=40.60 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=24.5
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+.+.|.+|+||||++..+|..+ +...+.++..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~ 78 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES---GLNFISVKGP 78 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT---TCEEEEEETT
T ss_pred EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcH
Confidence 6777999999999999988753 4456666654
No 355
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.61 E-value=0.51 Score=36.61 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=16.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHH
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA 49 (276)
...+|+ +-|.+||||||+...+.
T Consensus 15 ~~~ki~-ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 15 QEVRIL-LLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp SCEEEE-EEESTTSSHHHHHHHHC
T ss_pred CceEEE-EECCCCCCHHHHHHHHh
Confidence 334554 45799999999987764
No 356
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.56 E-value=0.53 Score=36.68 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=20.1
Q ss_pred hhhhhcCCceEEEEEeCCCCchHHHHHHHHH
Q 023886 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA 49 (276)
+..+-.....+|+++ |..|+||||+...|.
T Consensus 15 ~~~~~~~~~~~i~v~-G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 15 PEQYPEGGLPEIALA-GRSNVGKSSFINSLI 44 (195)
T ss_dssp GGGSCCSCCCEEEEE-EBTTSSHHHHHHHHH
T ss_pred hhhCCCCCCCEEEEE-CCCCCCHHHHHHHHh
Confidence 333333344555554 799999999988775
No 357
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.54 E-value=0.75 Score=42.89 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=27.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
..++++.|.+|+||||++..+|..+ +....-|+++
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~~ 142 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISLG 142 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH---TCEEEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEec
Confidence 4567888999999999999999887 3445555554
No 358
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.53 E-value=0.5 Score=42.84 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=27.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++=+...|.+|+|||++|.++|..+ |...+.+++.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s 249 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAP 249 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehh
Confidence 334556677999999999998888654 5677777654
No 359
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.51 E-value=0.5 Score=42.01 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=23.2
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
-+..+++.+.|..|+||||++..|+..+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3455678889999999999999999754
No 360
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.36 E-value=0.51 Score=42.80 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=27.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++=++..|.+|+|||++|.++|..+ |...+.|++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s 249 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPAS 249 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehh
Confidence 34556677999999999999988754 5677777764
No 361
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=86.33 E-value=0.53 Score=36.39 Aligned_cols=30 Identities=20% Similarity=0.353 Sum_probs=17.0
Q ss_pred hhhhhc-CCceEEEEEeCCCCchHHHHHHHHH
Q 023886 19 VRNILE-QDSLKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 19 l~~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA 49 (276)
++.++. .+..+|++ -|.+|+||||+...+.
T Consensus 9 ~~~~~~~~~~~~i~v-~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 9 LKKMKQKERELRLLM-LGLDNAGKTTILKKFN 39 (186)
T ss_dssp --------CCEEEEE-ECSTTSSHHHHHHHHT
T ss_pred HHhhcccCCeeEEEE-ECCCCCCHHHHHHHHh
Confidence 344444 34445544 4899999999987765
No 362
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=86.08 E-value=0.37 Score=37.41 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.3
Q ss_pred eEEEEEeCCCCchHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSI 47 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~ 47 (276)
..++.+.|..|+||||++..
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 45677889999999999986
No 363
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=86.06 E-value=4.8 Score=38.72 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=32.4
Q ss_pred CeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEccccC
Q 023886 224 LTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLY 265 (276)
Q Consensus 224 ~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~~ 265 (276)
.+++++|.-.-.-.-.+++.+++.+.++++++ -+++|++-.
T Consensus 109 ~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~-i~~iNKiDr 149 (709)
T 4fn5_A 109 LDGAVVVFCGTSGVEPQSETVWRQANKYGVPR-IVYVNKMDR 149 (709)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHHHHTCCE-EEEEECSSS
T ss_pred hCeEEEEEECCCCCchhHHHHHHHHHHcCCCe-EEEEccccc
Confidence 36677777776666778899999999999987 778998843
No 364
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=86.05 E-value=0.63 Score=39.08 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=30.6
Q ss_pred ccccchhhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 14 IPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 14 ~~~~~l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
.+...|...++-.+++++|+.+-+|.|+ .+|..|++.|.+|+++|
T Consensus 18 ~~~~~m~~~~~l~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~ 62 (273)
T 3uf0_A 18 LYFQSMTGPFSLAGRTAVVTGAGSGIGR-----AIAHGYARAGAHVLAWG 62 (273)
T ss_dssp -------CTTCCTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred cchhhcccccCCCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEc
Confidence 3444454444445577888888999997 57788899999999998
No 365
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.01 E-value=0.43 Score=40.12 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=23.0
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
+++.|..|+||||++..+|..+. ...+.++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~ 105 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR---VPFITAS 105 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT---CCEEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcC---CCEEEec
Confidence 67789999999999999987653 3445554
No 366
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.99 E-value=0.59 Score=36.61 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=17.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHH
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~ 50 (276)
+..+|++ -|.+||||||+...|..
T Consensus 27 ~~~ki~v-~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 27 AEVKLAI-FGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CCEEEEE-ECCTTSSHHHHHHHHHH
T ss_pred CceEEEE-ECCCCCCHHHHHHHHHh
Confidence 3455554 47899999999877664
No 367
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=85.97 E-value=0.89 Score=39.32 Aligned_cols=34 Identities=32% Similarity=0.248 Sum_probs=25.6
Q ss_pred eEEEEEeC-CCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 28 LKWVFVGG-KGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 28 ~~i~v~s~-kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
+.|.|-|- -||+|||-++..|+..|. ++++.+|.
T Consensus 37 PVI~VGNitvGGTGKTP~vi~L~~~L~--~~~~~ils 71 (315)
T 4ehx_A 37 PVISVGNLSVGGSGKTSFVMYLADLLK--DKRVCILS 71 (315)
T ss_dssp CEEEEEESBSSCCSHHHHHHHHHHHTT--TSCEEEEE
T ss_pred CEEEECCEEeCCCChHHHHHHHHHHHh--hcCceEEe
Confidence 34455555 999999999999999884 45566654
No 368
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=85.88 E-value=5.6 Score=34.77 Aligned_cols=39 Identities=10% Similarity=0.029 Sum_probs=32.5
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
..+++|+|++. ||-|=-+-...||.+|.++|++|.++-.
T Consensus 18 ~~m~rIl~~~~-~~~GHv~p~l~La~~L~~~Gh~V~v~~~ 56 (415)
T 3rsc_A 18 RHMAHLLIVNV-ASHGLILPTLTVVTELVRRGHRVSYVTA 56 (415)
T ss_dssp -CCCEEEEECC-SCHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred ccCCEEEEEeC-CCccccccHHHHHHHHHHCCCEEEEEeC
Confidence 34578887765 7889889999999999999999999984
No 369
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=85.73 E-value=0.5 Score=37.80 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
..++.+.|..|+||||+...++..+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4567788999999999999998766
No 370
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=85.47 E-value=0.76 Score=38.06 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=29.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
..++++|+.+-||.|+ .+|..|++.|.+|.++|-++
T Consensus 11 ~~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 46 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGA-----AIARALDKAGATVAIADLDV 46 (263)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3467788888999998 46777888999999998774
No 371
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.34 E-value=0.7 Score=36.83 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=16.0
Q ss_pred EEEeCCCCchHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~ 50 (276)
+++-|.+|+||||+...|..
T Consensus 15 i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 15 IIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 44558999999999887764
No 372
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=85.27 E-value=0.35 Score=39.40 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=15.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHH-HHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILS-ILL 52 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA-~~l 52 (276)
..++.+.|..|+||||++..|+ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3567788999999999999988 654
No 373
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=85.13 E-value=0.78 Score=36.32 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=25.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhC------CCcEEEE
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEV------RPSVLII 62 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~------G~kVlli 62 (276)
+++.+..|.|||.++...+..+... +.+++++
T Consensus 51 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil 88 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVL 88 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEE
Confidence 6677899999999999888766532 5678776
No 374
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.05 E-value=0.54 Score=42.16 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=26.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++=+...|.+|+|||++|.++|..+ |...+.|++.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s 216 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGA 216 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhH
Confidence 4446777999999999999888754 5667777664
No 375
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=84.96 E-value=0.44 Score=37.22 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=15.5
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+++-|.+||||||+...+.
T Consensus 24 i~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 4556899999999987765
No 376
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=84.90 E-value=0.46 Score=38.52 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=24.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEE
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLI 61 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVll 61 (276)
..++.+.|..|+||||+.-.|+..+ . |. +.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~-p-G~-i~~ 53 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF-P-NY-FYF 53 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS-T-TT-EEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC-C-Cc-EEE
Confidence 4567777999999999999998866 3 53 544
No 377
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=84.90 E-value=0.53 Score=36.57 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHHHH
Q 023886 30 WVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
+.++.|..|+||||+.-.+...+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 667889999999999999988775
No 378
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.78 E-value=0.55 Score=36.10 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=18.7
Q ss_pred hhhc-CCceEEEEEeCCCCchHHHHHHHHH
Q 023886 21 NILE-QDSLKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 21 ~~~~-~~~~~i~v~s~kGGvGKTT~a~~lA 49 (276)
.++. .+..+|+++ |..|+||||+...+.
T Consensus 11 ~~~~~~~~~~i~v~-G~~~~GKssli~~l~ 39 (183)
T 1moz_A 11 KLWGSNKELRILIL-GLDGAGKTTILYRLQ 39 (183)
T ss_dssp GGTTCSSCEEEEEE-EETTSSHHHHHHHTC
T ss_pred HhcCCCCccEEEEE-CCCCCCHHHHHHHHh
Confidence 3444 444555555 789999999986553
No 379
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=84.66 E-value=0.78 Score=43.31 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=28.0
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCC----CcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVR----PSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G----~kVlliD~D 65 (276)
+++.|-+|+|||++...-+..+.+.+ .++|++-.-
T Consensus 25 ~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft 63 (647)
T 3lfu_A 25 LLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFT 63 (647)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESS
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEecc
Confidence 45667799999999999888887653 689998765
No 380
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=84.55 E-value=0.84 Score=40.49 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVR 56 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G 56 (276)
.+.+++-|-=|+||||.+..|+..|...|
T Consensus 49 ~~fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 49 LLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 34467778889999999999999998877
No 381
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=84.44 E-value=0.59 Score=36.62 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=16.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHH
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA 49 (276)
+..+|+ +-|.+||||||+...+.
T Consensus 22 ~~~ki~-~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 22 KHGKLL-FLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp --CEEE-EEESTTSSHHHHHHHHH
T ss_pred CccEEE-EECCCCCCHHHHHHHHh
Confidence 334554 55799999999988776
No 382
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.36 E-value=0.65 Score=42.36 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=27.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++=++..|.+|+|||++|.++|..+ |...+.+++.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s 277 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGS 277 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhH
Confidence 445557778999999999999888654 5667766654
No 383
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.35 E-value=0.57 Score=36.34 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=19.6
Q ss_pred hhcCCceEEEEEeCCCCchHHHHHHHHH
Q 023886 22 ILEQDSLKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 22 ~~~~~~~~i~v~s~kGGvGKTT~a~~lA 49 (276)
++..+..+|+++ |..|+||||+...|.
T Consensus 11 ~~~~~~~~i~v~-G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 11 LFNHQEHKVIIV-GLDNAGKTTILYQFS 37 (187)
T ss_dssp HHTTSCEEEEEE-ESTTSSHHHHHHHHH
T ss_pred hcCCCccEEEEE-CCCCCCHHHHHHHHh
Confidence 444555565555 789999999988776
No 384
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.14 E-value=0.48 Score=36.81 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=15.9
Q ss_pred EEEeCCCCchHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~ 50 (276)
+++-|.+|+||||+...|..
T Consensus 24 i~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 34557899999999988864
No 385
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=84.07 E-value=0.73 Score=40.18 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=20.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVR 56 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G 56 (276)
..+++-|-=|+||||.+..|+..|...|
T Consensus 5 ~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 5 LRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 4467788889999999999999998877
No 386
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.80 E-value=0.59 Score=34.90 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=15.3
Q ss_pred EEEEEeCCCCchHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA 49 (276)
+|++ -|.+|+||||+...+.
T Consensus 5 ~i~v-~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 5 KLVV-VGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEE-EESTTSSHHHHHHHHH
T ss_pred EEEE-ECCCCCCHHHHHHHHH
Confidence 4444 4679999999987775
No 387
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=83.77 E-value=1.1 Score=36.98 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=29.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+++++|+.+-||.|+ .+|..|++.|.+|.++|-++.
T Consensus 22 ~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 22 SKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence 356778888999887 677888999999999998764
No 388
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=83.73 E-value=0.83 Score=34.08 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.2
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+++-|.+|+||||+...+.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3445789999999988876
No 389
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=83.56 E-value=0.95 Score=37.61 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=32.7
Q ss_pred hhhhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 20 RNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 20 ~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+.|.+-.+++++|+.+-||.|+ .+|..|++.|.+|.++|-+..
T Consensus 21 ~~m~~~~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 63 (260)
T 3un1_A 21 QSMMRNQQKVVVITGASQGIGA-----GLVRAYRDRNYRVVATSRSIK 63 (260)
T ss_dssp HHHHHTTCCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred hhhhCcCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChh
Confidence 3344445567778888999996 567788899999999998754
No 390
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=83.55 E-value=0.39 Score=41.48 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.2
Q ss_pred EEEeCCCCchHHHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la 53 (276)
+++.|.+|+|||++|..+|..+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 67789999999999999998664
No 391
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=83.48 E-value=0.99 Score=37.86 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=25.5
Q ss_pred EEeCCCCchHHHHHHHHHHHHHhCCC-cEEEEe
Q 023886 32 FVGGKGGVGKTTCSSILSILLAEVRP-SVLIIS 63 (276)
Q Consensus 32 v~s~kGGvGKTT~a~~lA~~la~~G~-kVlliD 63 (276)
++.+.-|.|||.++..++..+...|. +|+++-
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~ 164 (282)
T 1rif_A 132 ILNLPTSAGRSLIQALLARYYLENYEGKILIIV 164 (282)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHCSSEEEEEC
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEE
Confidence 45789999999999988887766554 888873
No 392
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=83.44 E-value=0.95 Score=34.36 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.1
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+++-|.+||||||+...|.
T Consensus 6 v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5666899999999998875
No 393
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=83.39 E-value=0.38 Score=42.13 Aligned_cols=38 Identities=21% Similarity=0.452 Sum_probs=29.9
Q ss_pred eEEEEEeCCCCchHHHHH-HHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCS-SILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a-~~lA~~la~~G~kVlliD~D~~ 67 (276)
...+++.|-=|+||||++ ..|+..+...|. .++.-.|.
T Consensus 12 ~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g~--vv~trEPg 50 (341)
T 1osn_A 12 VLRIYLDGAYGIGKTTAAEEFLHHFAITPNR--ILLIGEPL 50 (341)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHTTTTSGGG--EEEECCCH
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCC
Confidence 456789999999999999 999988887773 45566663
No 394
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=83.37 E-value=0.73 Score=36.52 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=16.3
Q ss_pred cccchhhhhcCC-ceEEEEEeCCCCchHHHHHHHHH
Q 023886 15 PEGSVRNILEQD-SLKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 15 ~~~~l~~~~~~~-~~~i~v~s~kGGvGKTT~a~~lA 49 (276)
+..+|.++.... ..+| ++-|..||||||+...+.
T Consensus 17 ~~~~m~~~~~~~~~~ki-~vvG~~~~GKSsLi~~l~ 51 (204)
T 4gzl_A 17 RGSHMENLYFQGQAIKC-VVVGDGAVGKTCLLISYT 51 (204)
T ss_dssp -------------CEEE-EEEESTTSSHHHHHHHHH
T ss_pred chhHHHhHhhcCCeEEE-EEECcCCCCHHHHHHHHH
Confidence 334454444333 3444 555899999999987665
No 395
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=83.31 E-value=0.59 Score=36.22 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=16.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA 49 (276)
.+|++ -|..|+||||+...|.
T Consensus 24 ~~i~v-~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 24 GEVAF-VGRSNVGKSSLLNALF 44 (195)
T ss_dssp CEEEE-EEBTTSSHHHHHHHHH
T ss_pred eEEEE-ECCCCCCHHHHHHHHH
Confidence 45554 4899999999987763
No 396
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=83.27 E-value=0.97 Score=40.55 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=24.1
Q ss_pred CCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 37 GGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 37 GGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
|=-||||++.-++..|.+.|++|.++-.
T Consensus 56 GTnGKtTT~~~l~~iL~~~G~~~g~~~s 83 (422)
T 1w78_A 56 GTNGKGTTCRTLESILMAAGYKVGVYSS 83 (422)
T ss_dssp CSSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCcChHHHHHHHHHHHHHCCCCEEEECC
Confidence 4468999999999999999999987643
No 397
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=83.03 E-value=0.94 Score=41.66 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=27.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
.+-+++.|.+|+|||++|..+|..+ |..++.+++.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~ 272 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP 272 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEch
Confidence 3446777999999999999887654 6777777753
No 398
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=83.00 E-value=0.8 Score=38.11 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=29.8
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
.+++++|+.+-||.|+ .+|..|++.|.+|.++|-+..
T Consensus 26 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 62 (260)
T 3gem_A 26 SSAPILITGASQRVGL-----HCALRLLEHGHRVIISYRTEH 62 (260)
T ss_dssp -CCCEEESSTTSHHHH-----HHHHHHHHTTCCEEEEESSCC
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCChH
Confidence 4456778888899887 577888899999999998864
No 399
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=82.79 E-value=4.9 Score=37.88 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=15.2
Q ss_pred EEEeCCCCchHHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSIL 51 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~ 51 (276)
+.+-|..|+||||++-.|...
T Consensus 9 I~IiGh~d~GKTTLi~rLl~~ 29 (600)
T 2ywe_A 9 FCIIAHVDHGKSTLADRLLEY 29 (600)
T ss_dssp EEEECC--CCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 455689999999999988653
No 400
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=82.75 E-value=1 Score=33.98 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=16.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA 49 (276)
.+| ++-|.+|+||||+...+.
T Consensus 8 ~~i-~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 8 MRI-LILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEE-EEECSTTSSHHHHHHHHH
T ss_pred cEE-EEECCCCCCHHHHHHHHh
Confidence 344 455799999999988774
No 401
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.68 E-value=0.93 Score=40.98 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=26.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+++=+...|.+|+|||++|.++|..+ |...+.++..
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s 250 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGS 250 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESG
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHH
Confidence 34556777999999999998888754 5566666654
No 402
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=82.62 E-value=1 Score=36.56 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=22.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
+-..|--|+||||++..|+. .|. -+||+|
T Consensus 12 iglTGgigsGKStv~~~l~~----~g~--~vidaD 40 (210)
T 4i1u_A 12 IGLTGGIGSGKTTVADLFAA----RGA--SLVDTD 40 (210)
T ss_dssp EEEECCTTSCHHHHHHHHHH----TTC--EEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHH----CCC--cEEECc
Confidence 45668889999999987764 565 457998
No 403
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=82.51 E-value=1 Score=36.91 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=22.5
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
.++.+..|.|||.++..++..+ +.+++++-
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~ 140 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL---STPTLIVV 140 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS---CSCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 4555688999999988776554 67777774
No 404
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=82.50 E-value=1 Score=38.71 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=24.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcE
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSV 59 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kV 59 (276)
++..++.+-|..|+||||+...|+..+ .| +|
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G-~I 154 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL--GG-SV 154 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH--TC-EE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc--Cc-eE
Confidence 344566667999999999999999888 55 45
No 405
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=82.22 E-value=1.5 Score=39.31 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=28.8
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCc--EEEEecCCC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPS--VLIISTDPA 67 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~k--VlliD~D~~ 67 (276)
.++.++.++ |..|+||||++..+|..+++.+.. +.++=.|..
T Consensus 172 ~rGQr~~Iv-G~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER 215 (422)
T 3ice_A 172 GRGQRGLIV-APPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER 215 (422)
T ss_dssp BTTCEEEEE-CCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSC
T ss_pred cCCcEEEEe-cCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCC
Confidence 344566666 567999999999999998875433 334444433
No 406
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=82.11 E-value=0.87 Score=34.19 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=16.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA 49 (276)
.+|+ +-|.+|+||||+...|.
T Consensus 6 ~~i~-v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 6 IKMV-VVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEE-EECSTTSSHHHHHHHHH
T ss_pred EEEE-EECcCCCCHHHHHHHHH
Confidence 3444 44789999999998876
No 407
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=81.97 E-value=1.3 Score=36.88 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=28.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++++|+.+-+|.|+ .+|..|++.|.+|.++|.|.
T Consensus 3 K~vlVTGas~GIG~-----aia~~la~~Ga~V~~~~~~~ 36 (247)
T 3ged_A 3 RGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp CEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEecCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 56678888999998 46788999999999999874
No 408
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=81.93 E-value=1.2 Score=33.73 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.4
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
.+.++.|..|+||||+--++...|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4678889999999999998888774
No 409
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=81.84 E-value=1.6 Score=34.64 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=34.4
Q ss_pred CceEEEEEeCCCCchHHHH-HHHHHHHHHhCCCcEEEEecCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTC-SSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~-a~~lA~~la~~G~kVlliD~D~~ 67 (276)
....+.++|+-||++|++. .+.|+....+.|++|.++--|..
T Consensus 49 s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~ 91 (189)
T 2l8b_A 49 DRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRR 91 (189)
T ss_dssp HSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTH
T ss_pred cCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchH
Confidence 3467889999999999988 66677777789999999988743
No 410
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=81.72 E-value=0.85 Score=39.38 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCc
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPS 58 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~k 58 (276)
+-+++.|..|+||||+|..| .++|++
T Consensus 148 ~gvli~G~sG~GKStlal~l----~~~G~~ 173 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDL----INKNHL 173 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHH----HTTTCE
T ss_pred EEEEEEcCCCCCHHHHHHHH----HHcCCE
Confidence 33567899999999998664 457875
No 411
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=81.55 E-value=0.83 Score=36.48 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=17.2
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHH
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA 49 (276)
....+|++ -|..|+||||+.-.|.
T Consensus 27 ~~~~~i~v-~G~~~~GKSslin~l~ 50 (223)
T 4dhe_A 27 TVQPEIAF-AGRSNAGKSTAINVLC 50 (223)
T ss_dssp CCSCEEEE-EESCHHHHHHHHHHHT
T ss_pred CCCCEEEE-EcCCCCCHHHHHHHHh
Confidence 33455555 4899999999987663
No 412
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=81.20 E-value=1.5 Score=36.65 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=30.3
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
-.+++++|+.+-+|.|+ .+|..|++.|.+|.+++.+..
T Consensus 29 l~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~~~~~ 66 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGA-----AIAKRLALEGAAVALTYVNAA 66 (271)
T ss_dssp CTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCH
T ss_pred CCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCCH
Confidence 34567778888999887 578889999999999987653
No 413
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=81.19 E-value=1.1 Score=36.93 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=28.7
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.+++++++.+-+|.|+ .+|..|++.|.+|.++|-+.
T Consensus 8 ~gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~ 43 (248)
T 3op4_A 8 EGKVALVTGASRGIGK-----AIAELLAERGAKVIGTATSE 43 (248)
T ss_dssp TTCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3456778887888886 57788899999999998764
No 414
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=81.07 E-value=1.7 Score=39.74 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=24.1
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
+++.|.+|+||||++..+|..+ |..+.-+++
T Consensus 52 vLL~GppGtGKT~Laraia~~~---~~~f~~is~ 82 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA---NVPFFHISG 82 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCCeeeCCH
Confidence 6778999999999999998754 555655554
No 415
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=80.92 E-value=1.3 Score=34.08 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=16.1
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+++-|.+||||||+...|.
T Consensus 10 i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4666899999999998875
No 416
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=80.87 E-value=0.93 Score=38.79 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=22.8
Q ss_pred hhhhhcCCceEEEEEeCCCCchHHHHHHHHH
Q 023886 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 19 l~~~~~~~~~~i~v~s~kGGvGKTT~a~~lA 49 (276)
+..+++.....+..+.|..|+||||+.-.|+
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 3344433344677788999999999999988
No 417
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=80.83 E-value=0.82 Score=35.45 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=16.1
Q ss_pred EEEeCCCCchHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~ 50 (276)
+++-|.+||||||+...++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 45558999999999887763
No 418
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=80.80 E-value=0.98 Score=37.20 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+++.+ .|.+|+||||.|..||..+
T Consensus 9 ~~~~~-~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLIL-LGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEE-ECCTTSCHHHHHHHHHHHH
T ss_pred cceee-ECCCCCCHHHHHHHHHHHh
Confidence 34444 4899999999999998766
No 419
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=80.77 E-value=1.5 Score=37.02 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=25.0
Q ss_pred hhhhhcCC-c-eEEEEEeCCCCchHHHHHHHHHHHH
Q 023886 19 VRNILEQD-S-LKWVFVGGKGGVGKTTCSSILSILL 52 (276)
Q Consensus 19 l~~~~~~~-~-~~i~v~s~kGGvGKTT~a~~lA~~l 52 (276)
+...+.+. + ..-+++.|.+|+|||++|..+|..+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 44444443 3 4457888999999999999999853
No 420
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=80.74 E-value=1 Score=39.25 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=27.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+.+++-|-=|+||||.+..|+..|...+ +|+ +--.|.
T Consensus 8 ~fI~~EG~dGaGKTT~~~~La~~L~~~~-~v~-~trEPg 44 (334)
T 1p6x_A 8 VRIYLDGVYGIGKSTTGRVMASAASGGS-PTL-YFPEPM 44 (334)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGGGCSS-CEE-EECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccCC-cEE-EEeCCC
Confidence 4567888999999999999999987644 444 444443
No 421
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=80.70 E-value=1.1 Score=35.24 Aligned_cols=23 Identities=30% Similarity=0.161 Sum_probs=17.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHH
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~ 50 (276)
..+|++ -|.+||||||+.-.|..
T Consensus 24 ~~ki~v-vG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 24 YRKVVI-LGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEE-EESTTSSHHHHHHHHHH
T ss_pred cEEEEE-ECCCCcCHHHHHHHHHh
Confidence 345544 57999999999877763
No 422
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=80.66 E-value=1.3 Score=33.81 Aligned_cols=21 Identities=38% Similarity=0.423 Sum_probs=15.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA 49 (276)
.+|++ -|.+|+||||+...+.
T Consensus 9 ~ki~v-~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 9 IKCVT-VGDGAVGKTCLLISYT 29 (182)
T ss_dssp CEEEE-ECSTTSSHHHHHHHHH
T ss_pred EEEEE-ECCCCCCHHHHHHHHh
Confidence 45554 4899999999986665
No 423
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=80.54 E-value=1.7 Score=35.37 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=28.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++++++.+-||.|+ .+|..|++.|.+|.++|-++
T Consensus 11 ~k~vlITGasggiG~-----~la~~l~~~G~~V~~~~r~~ 45 (254)
T 2wsb_A 11 GACAAVTGAGSGIGL-----EICRAFAASGARLILIDREA 45 (254)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 457778888999887 56778888999999998764
No 424
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=80.48 E-value=1.3 Score=39.95 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=25.0
Q ss_pred CCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 36 KGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 36 kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
-|=-||||++.-++..|.+.|+||.++-.
T Consensus 58 tGTNGKgSt~~~l~~iL~~~G~~vg~~tS 86 (437)
T 3nrs_A 58 AGTNGKGTTCCTLEAILLAAGLRVGVYSS 86 (437)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred ECCcChHHHHHHHHHHHHHCCCcEEEECC
Confidence 34568999999999999999999988654
No 425
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=80.42 E-value=0.91 Score=43.23 Aligned_cols=41 Identities=22% Similarity=0.122 Sum_probs=32.9
Q ss_pred CCeEEEEEecCCcccHHHHHHHHHHHhhCCCCcCeEEEcccc
Q 023886 223 DLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL 264 (276)
Q Consensus 223 ~~~~~i~V~~p~~~~~~ea~~~~~~l~~~~~~~~g~vvN~~~ 264 (276)
..+++++|.-...-.-.+++..++.+.+++++. -+++|++-
T Consensus 90 ~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~-i~~INKmD 130 (638)
T 3j25_A 90 VLDGAILLISAKDGVQAQTRILFHALRKMGIPT-IFFINKID 130 (638)
T ss_dssp TCSEEECCEESSCTTCSHHHHHHHHHHHHTCSC-EECCEECC
T ss_pred HhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCe-EEEEeccc
Confidence 347788777776666678899999999999997 57899984
No 426
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=80.28 E-value=1.1 Score=37.45 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=29.5
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 26 DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 26 ~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
..++++|+.+-||.|+ .+|..|++.|.+|.++|-+..
T Consensus 27 ~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~~~ 63 (266)
T 3uxy_A 27 EGKVALVTGAAGGIGG-----AVVTALRAAGARVAVADRAVA 63 (266)
T ss_dssp TTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEECSSCCT
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 4466778888899887 577888999999999987653
No 427
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=80.24 E-value=1.6 Score=36.40 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=30.2
Q ss_pred cCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 24 EQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 24 ~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+-.+++++|+.+-+|.|+ .+|..|++.|.+|.++|-+.
T Consensus 27 ~l~~k~vlVTGas~GIG~-----aia~~l~~~G~~Vi~~~r~~ 64 (281)
T 3ppi_A 27 QFEGASAIVSGGAGGLGE-----ATVRRLHADGLGVVIADLAA 64 (281)
T ss_dssp GGTTEEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred ccCCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 334567778888999887 46778889999999998774
No 428
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=80.19 E-value=1.3 Score=34.63 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=16.7
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHH
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA 49 (276)
....+|+++ |..|+||||+...|.
T Consensus 26 ~~~~ki~v~-G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 26 QKAYKIVLA-GDAAVGKSSFLMRLC 49 (199)
T ss_dssp --CEEEEEE-SSTTSSHHHHHHHHH
T ss_pred CCCeEEEEE-CcCCCCHHHHHHHHH
Confidence 333455554 899999999988775
No 429
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=80.07 E-value=1.7 Score=36.35 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=31.7
Q ss_pred hcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 23 ~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
++-.+++++|+.+-+|.|+ .+|..|++.|.+|.++|-++..
T Consensus 29 ~~l~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~~~ 69 (275)
T 4imr_A 29 FGLRGRTALVTGSSRGIGA-----AIAEGLAGAGAHVILHGVKPGS 69 (275)
T ss_dssp HCCTTCEEEETTCSSHHHH-----HHHHHHHHTTCEEEEEESSTTT
T ss_pred CCCCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEcCCHHH
Confidence 3344567778888899887 4677888999999999987654
No 430
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=80.05 E-value=1.3 Score=36.82 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=30.7
Q ss_pred hhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 22 ~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++-.+++++|+.+-+|.|+ .+|..|++.|.+|.++|-++
T Consensus 15 ~~~l~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 54 (266)
T 4egf_A 15 VLRLDGKRALITGATKGIGA-----DIARAFAAAGARLVLSGRDV 54 (266)
T ss_dssp GGCCTTCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred ccCCCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 33444567778888899887 46778889999999998874
No 431
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=79.92 E-value=1 Score=42.47 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=29.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
..+++.|..|+||||++..+|..+.........++.++.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 356778999999999999999877655445666766653
No 432
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=79.68 E-value=1.5 Score=35.04 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=22.5
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHh
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAE 54 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~ 54 (276)
.+.++.|..|+||||+--++.++|..
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 56788899999999999999888774
No 433
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=79.64 E-value=1.7 Score=35.38 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=28.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++++++.+-||.|+ .+|..|++.|.+|.++|-+.
T Consensus 4 k~vlVTGas~GIG~-----a~a~~l~~~G~~V~~~~r~~ 37 (235)
T 3l6e_A 4 GHIIVTGAGSGLGR-----ALTIGLVERGHQVSMMGRRY 37 (235)
T ss_dssp CEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 46678888999997 57788889999999998774
No 434
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=79.62 E-value=2.3 Score=35.57 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=31.4
Q ss_pred hcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 23 ~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
++-.+++++|+.+-||.|+ .+|..|++.|.+|.++|-+..
T Consensus 28 ~~l~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~~ 67 (276)
T 3r1i_A 28 FDLSGKRALITGASTGIGK-----KVALAYAEAGAQVAVAARHSD 67 (276)
T ss_dssp GCCTTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESSGG
T ss_pred cCCCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 3334567788888999997 567888899999999988653
No 435
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=79.55 E-value=1.5 Score=34.10 Aligned_cols=19 Identities=42% Similarity=0.534 Sum_probs=15.3
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+++-|..||||||+...+.
T Consensus 26 i~~vG~~~~GKSsl~~~l~ 44 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFS 44 (194)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 4556899999999987765
No 436
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=79.43 E-value=1.2 Score=33.22 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=15.2
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+++-|.+|+||||+...|.
T Consensus 7 i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3455889999999987776
No 437
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=79.36 E-value=0.97 Score=37.79 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=31.2
Q ss_pred hhcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 22 ILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 22 ~~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++=+++.++|+.+-+|.|+. +|..|++.|.+|.+.|.+.
T Consensus 4 ~f~L~gKvalVTGas~GIG~a-----ia~~la~~Ga~Vvi~~~~~ 43 (255)
T 4g81_D 4 LFDLTGKTALVTGSARGLGFA-----YAEGLAAAGARVILNDIRA 43 (255)
T ss_dssp TTCCTTCEEEETTCSSHHHHH-----HHHHHHHTTCEEEECCSCH
T ss_pred CcCCCCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence 444455667788778898875 5888999999999998764
No 438
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=79.20 E-value=1.1 Score=37.60 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=30.4
Q ss_pred hcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 23 ~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++-.+++++|+.+-||.|+ .+|..|++.|.+|.++|-++
T Consensus 22 ~~l~gk~~lVTGas~gIG~-----aia~~la~~G~~V~~~~r~~ 60 (271)
T 4ibo_A 22 FDLGGRTALVTGSSRGLGR-----AMAEGLAVAGARILINGTDP 60 (271)
T ss_dssp GCCTTCEEEETTCSSHHHH-----HHHHHHHHTTCEEEECCSCH
T ss_pred cCCCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3344567778888999987 57788899999999988764
No 439
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=79.10 E-value=1.5 Score=36.55 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=30.3
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
.++++++|+.+-+|.|+ .+|..|++.|.+|.++|.+...
T Consensus 12 ~~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~~~ 50 (269)
T 3vtz_A 12 FTDKVAIVTGGSSGIGL-----AVVDALVRYGAKVVSVSLDEKS 50 (269)
T ss_dssp TTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCC--
T ss_pred CCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCchh
Confidence 34567778888999997 5778899999999999987643
No 440
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=79.09 E-value=1.8 Score=39.82 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=24.3
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
+++.|.+|+||||++..+|..+ +...+.++.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~---~~~~i~i~g 97 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEA---RVPFITASG 97 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEEeh
Confidence 6778999999999999998764 345666664
No 441
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=79.05 E-value=1.3 Score=33.35 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=15.3
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+++-|.+|+||||+...|.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3455899999999988775
No 442
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=78.91 E-value=0.94 Score=35.84 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=15.5
Q ss_pred EEEeCCCCchHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~ 50 (276)
+++-|..|+||||+...|..
T Consensus 28 i~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 28 LVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 45558999999999877653
No 443
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=78.73 E-value=1.2 Score=43.54 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=25.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
+++=++..|.+|+|||++|..+|.. .|..+..|++
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~e---lg~~~~~v~~ 271 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANE---TGAFFFLING 271 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTT---TTCEEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH---hCCeEEEEEh
Confidence 3455677799999999999988743 3555666654
No 444
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=78.60 E-value=0.9 Score=35.37 Aligned_cols=19 Identities=37% Similarity=0.372 Sum_probs=15.3
Q ss_pred EEeCCCCchHHHHHHHHHH
Q 023886 32 FVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 32 v~s~kGGvGKTT~a~~lA~ 50 (276)
++-|..||||||+...|..
T Consensus 22 ~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 22 VVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEECTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4557999999999887763
No 445
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=78.33 E-value=2.1 Score=34.76 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
+++++++.+-||.|+ .+|..|+++|.+|.++|-++..
T Consensus 7 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~~~ 43 (241)
T 1dhr_A 7 ARRVLVYGGRGALGS-----RCVQAFRARNWWVASIDVVENE 43 (241)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHTTTCEEEEEESSCCT
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHhCCCEEEEEeCChhh
Confidence 356778888999887 4677888999999999887643
No 446
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=78.23 E-value=1.4 Score=33.72 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=15.2
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+++-|.+|+||||+...|.
T Consensus 7 i~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4455899999999987775
No 447
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=78.15 E-value=2.2 Score=35.46 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=27.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D 65 (276)
++++|+.+-||.|+ .+|..|++.|.+|.++|-+
T Consensus 17 k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~ 49 (266)
T 3p19_A 17 KLVVITGASSGIGE-----AIARRFSEEGHPLLLLARR 49 (266)
T ss_dssp CEEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECC
Confidence 56678888999997 5678889999999999876
No 448
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=78.08 E-value=2 Score=34.72 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=29.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
++++++.+-||.|+ .+|..|++.|.+|.++|-++..
T Consensus 4 k~vlITGas~gIG~-----~~a~~l~~~G~~V~~~~r~~~~ 39 (236)
T 1ooe_A 4 GKVIVYGGKGALGS-----AILEFFKKNGYTVLNIDLSAND 39 (236)
T ss_dssp EEEEEETTTSHHHH-----HHHHHHHHTTEEEEEEESSCCT
T ss_pred CEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEecCccc
Confidence 56678888888887 5677888999999999987643
No 449
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=77.98 E-value=2.3 Score=34.95 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=29.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+++++|+.+-+|.|+ .+|..|++.|.+|.++|-++.
T Consensus 7 ~k~~lVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 42 (257)
T 3tpc_A 7 SRVFIVTGASSGLGA-----AVTRMLAQEGATVLGLDLKPP 42 (257)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChH
Confidence 456778888999997 467888899999999998764
No 450
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=77.85 E-value=1.4 Score=33.26 Aligned_cols=19 Identities=42% Similarity=0.665 Sum_probs=15.1
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+++-|.+||||||+...|.
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 4555899999999987765
No 451
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=77.85 E-value=2.2 Score=35.20 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=28.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++++++.+-||.|+ .+|..|++.|.+|.++|-++
T Consensus 9 ~k~vlVTGas~giG~-----~ia~~l~~~G~~V~~~~r~~ 43 (260)
T 2ae2_A 9 GCTALVTGGSRGIGY-----GIVEELASLGASVYTCSRNQ 43 (260)
T ss_dssp TCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 356778888999997 46777888999999998764
No 452
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=77.75 E-value=1.7 Score=32.91 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=16.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHH
Q 023886 28 LKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA 49 (276)
.+| ++-|.+|+||||+...|.
T Consensus 9 ~~i-~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 9 PVV-TIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CEE-EEESCTTTTHHHHHHHHH
T ss_pred CEE-EEECCCCCCHHHHHHHHh
Confidence 444 455899999999988774
No 453
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=77.68 E-value=2.3 Score=35.34 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=29.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+++++|+.+-||.|+ .+|..|++.|.+|.++|-+..
T Consensus 11 ~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 46 (271)
T 3tzq_B 11 NKVAIITGACGGIGL-----ETSRVLARAGARVVLADLPET 46 (271)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECTTS
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEcCCHH
Confidence 356778888999887 567788899999999998764
No 454
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=77.60 E-value=1.7 Score=34.01 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=16.7
Q ss_pred EEEEeCCCCchHHHHHHHHHH
Q 023886 30 WVFVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 30 i~v~s~kGGvGKTT~a~~lA~ 50 (276)
.+++-|..|+||||+...++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 346668999999999887764
No 455
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=77.53 E-value=2.2 Score=35.53 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=29.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++++|+.+-+|.|+ .+|..|++.|.+|.++|.+.
T Consensus 13 gk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 47 (278)
T 3sx2_A 13 GKVAFITGAARGQGR-----AHAVRLAADGADIIAVDLCD 47 (278)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEECCS
T ss_pred CCEEEEECCCChHHH-----HHHHHHHHCCCeEEEEeccc
Confidence 356778888999997 46778889999999999874
No 456
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=77.51 E-value=2.3 Score=35.02 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=29.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+++++|+.+-+|.|+ .+|..|++.|.+|.++|-++.
T Consensus 7 ~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~~ 42 (252)
T 3h7a_A 7 NATVAVIGAGDYIGA-----EIAKKFAAEGFTVFAGRRNGE 42 (252)
T ss_dssp SCEEEEECCSSHHHH-----HHHHHHHHTTCEEEEEESSGG
T ss_pred CCEEEEECCCchHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence 456778888999886 577888899999999988754
No 457
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=77.33 E-value=2 Score=35.16 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=28.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.++++++.+-+|.|+ .+|..|++.|.+|.++|-++
T Consensus 6 gk~vlVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~ 40 (247)
T 3rwb_A 6 GKTALVTGAAQGIGK-----AIAARLAADGATVIVSDINA 40 (247)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 356778888999887 57788899999999998764
No 458
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=77.28 E-value=1.9 Score=34.71 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=26.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++++++.+-||.|+ .+|..|++.|.+|.++|-++
T Consensus 2 k~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 35 (230)
T 3guy_A 2 SLIVITGASSGLGA-----ELAKLYDAEGKATYLTGRSE 35 (230)
T ss_dssp -CEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CEEEEecCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 34678888899887 56678889999999998764
No 459
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=77.27 E-value=2.1 Score=38.47 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=24.6
Q ss_pred CCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 37 GGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 37 GGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
|=-||||++.-++..|...|++|.++-.
T Consensus 46 GTnGKtTT~~~l~~iL~~~G~~vg~~~s 73 (428)
T 1jbw_A 46 GTNGKGSAANAIAHVLEASGLTVGLYTS 73 (428)
T ss_dssp CSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCCChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 4468999999999999999999998754
No 460
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=77.24 E-value=2.6 Score=34.89 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=29.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
+++++|+.+-||.|+. +|..|++.|.+|.++|-++..
T Consensus 8 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~~~ 44 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRA-----IAERFVDEGSKVIDLSIHDPG 44 (264)
T ss_dssp TCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESSCCC
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEecCccc
Confidence 3567788889999974 677888999999999887643
No 461
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=77.21 E-value=1.7 Score=35.37 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=28.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++++++.+-||.|+ .+|..|++.|.+|.++|-++
T Consensus 14 ~k~vlITGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 48 (247)
T 3i1j_A 14 GRVILVTGAARGIGA-----AAARAYAAHGASVVLLGRTE 48 (247)
T ss_dssp TCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEecCH
Confidence 356678877899997 46788889999999998774
No 462
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=77.19 E-value=2.1 Score=35.64 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=29.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++++|+.+-+|.|+ .+|..|++.|.+|.++|.+.
T Consensus 10 gk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~~~~ 44 (287)
T 3pxx_A 10 DKVVLVTGGARGQGR-----SHAVKLAEEGADIILFDICH 44 (287)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECCS
T ss_pred CCEEEEeCCCChHHH-----HHHHHHHHCCCeEEEEcccc
Confidence 456778888999887 57888899999999999773
No 463
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=77.16 E-value=1.5 Score=32.89 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=15.2
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+++-|.+|+||||+...+.
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 3555899999999987765
No 464
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=77.11 E-value=2.3 Score=35.77 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=29.0
Q ss_pred hcCCceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 23 ~~~~~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++-.+++++|+.+-+|.|+ .+|..|++.|.+|.++|-+.
T Consensus 24 ~~~~~k~~lVTGas~GIG~-----aia~~la~~G~~V~~~~r~~ 62 (283)
T 3v8b_A 24 MNQPSPVALITGAGSGIGR-----ATALALAADGVTVGALGRTR 62 (283)
T ss_dssp ---CCCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred cCCCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3334466778888999886 46788889999999998764
No 465
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=77.09 E-value=1.5 Score=34.65 Aligned_cols=20 Identities=30% Similarity=0.142 Sum_probs=16.0
Q ss_pred EEEeCCCCchHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~ 50 (276)
+++-|.+|+||||+...|..
T Consensus 10 i~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 10 VLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 45558999999999887763
No 466
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=77.08 E-value=2.3 Score=35.05 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=28.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++++|+.+-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 8 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 42 (259)
T 4e6p_A 8 GKSALITGSARGIGR-----AFAEAYVREGATVAIADIDI 42 (259)
T ss_dssp TCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 356778888999997 46788889999999998764
No 467
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=77.05 E-value=2.1 Score=35.26 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=27.3
Q ss_pred ceEEEEEeCCC-CchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKG-GVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kG-GvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+++++|+.+-| |.|+ .+|..|++.|.+|.++|-+..
T Consensus 22 ~k~vlITGasg~GIG~-----~~a~~l~~~G~~V~~~~r~~~ 58 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGS-----TTARRALLEGADVVISDYHER 58 (266)
T ss_dssp TCEEEESSCSSSSHHH-----HHHHHHHHTTCEEEEEESCHH
T ss_pred CCEEEEECCCCCchHH-----HHHHHHHHCCCEEEEecCCHH
Confidence 34566666666 8887 677888899999999987753
No 468
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=77.02 E-value=2.6 Score=34.49 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=28.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
++++++.+-||.|+. +|..|++.|.+|.++|-++.
T Consensus 8 k~vlVTGas~giG~~-----ia~~l~~~G~~V~~~~r~~~ 42 (250)
T 2fwm_X 8 KNVWVTGAGKGIGYA-----TALAFVEAGAKVTGFDQAFT 42 (250)
T ss_dssp CEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCCC
T ss_pred CEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCchh
Confidence 567788889999984 67788899999999988754
No 469
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=77.00 E-value=2.3 Score=34.87 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=28.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++++++.+-+|.|+ .+|..|++.|.+|.++|-+.
T Consensus 12 ~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 46 (252)
T 3f1l_A 12 DRIILVTGASDGIGR-----EAAMTYARYGATVILLGRNE 46 (252)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 356778888999987 56778889999999998774
No 470
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=77.00 E-value=2.2 Score=34.82 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=28.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++++++.+-||.|+ .+|..|++.|.+|.++|-+.
T Consensus 9 ~k~vlITGas~giG~-----~~a~~l~~~G~~V~~~~r~~ 43 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQ-----AYAEALAREGAAVVVADINA 43 (253)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEcCCH
Confidence 356778888999887 67888999999999998764
No 471
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=76.97 E-value=1.5 Score=34.30 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=16.3
Q ss_pred EEEeCCCCchHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~ 50 (276)
+++-|..|+||||+...++.
T Consensus 8 v~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 45668999999999887764
No 472
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=76.96 E-value=2 Score=36.01 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=28.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
.++++|+.+-||.|+ .+|..|++.|.+|.++|-+.
T Consensus 25 ~k~~lVTGas~GIG~-----~ia~~la~~G~~V~~~~r~~ 59 (281)
T 3v2h_A 25 TKTAVITGSTSGIGL-----AIARTLAKAGANIVLNGFGA 59 (281)
T ss_dssp TCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEECCCC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCC
Confidence 356778888999887 57788889999999998743
No 473
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=76.95 E-value=5 Score=29.69 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=33.4
Q ss_pred CceEEEEEeCCC--CchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 26 DSLKWVFVGGKG--GVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 26 ~~~~i~v~s~kG--GvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
..++++|+...| +..|...+..+|...+..|+.|-++=.+.
T Consensus 14 ~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~~d 56 (134)
T 3mc3_A 14 QXXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIX 56 (134)
T ss_dssp CCCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred ccceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEeC
Confidence 345666666667 99999999999999999999998775554
No 474
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=76.91 E-value=1.6 Score=42.65 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=25.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEec
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIST 64 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~ 64 (276)
..-+++.|.+|+||||++..+|..+ +...+.+++
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l---~~~~i~v~~ 271 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANET---GAFFFLING 271 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTT---TCEEEEEEH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc---CCcEEEEEc
Confidence 3456777999999999999887643 555666654
No 475
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=76.89 E-value=1.6 Score=32.50 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=15.3
Q ss_pred EEEeCCCCchHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~ 50 (276)
+++-|..|+||||+...+..
T Consensus 6 i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 34557999999999876653
No 476
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=76.79 E-value=0.75 Score=40.50 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=24.5
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEe
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD 63 (276)
.++.+.|..|+||||+...|+..+... ...+.++
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie 209 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIE 209 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEC
Confidence 456667899999999999988765543 3445555
No 477
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=76.71 E-value=2.3 Score=35.05 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=29.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++++++.+-+|.|+ .+|..|++.|.+|.++|-++
T Consensus 8 gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~ 42 (255)
T 4eso_A 8 GKKAIVIGGTHGMGL-----ATVRRLVEGGAEVLLTGRNE 42 (255)
T ss_dssp TCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 456778888999997 57888899999999998764
No 478
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=76.62 E-value=1.7 Score=38.01 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=20.3
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
..+.+.|..|+||||++..|+..+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456668999999999999998754
No 479
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=76.56 E-value=1.9 Score=36.22 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=28.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++++|+.+-||.|+ .+|..|++.|.+|.++|-+.
T Consensus 29 gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~~ 63 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGL-----AVARRLADEGCHVLCADIDG 63 (277)
T ss_dssp TCEEEETTTTSTHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 356678888999997 57788889999999998764
No 480
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=76.56 E-value=1.7 Score=32.71 Aligned_cols=19 Identities=37% Similarity=0.655 Sum_probs=15.3
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+++-|.+||||||+...+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4556899999999987764
No 481
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=76.51 E-value=1.6 Score=32.65 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=15.4
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+++-|..|+||||+...|.
T Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 3555899999999988874
No 482
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=76.46 E-value=2.1 Score=34.53 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=29.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~ 67 (276)
+++|+++.+-||.|+ .++..|+++|.+|.+++-++.
T Consensus 21 ~~~ilVtGatG~iG~-----~l~~~L~~~G~~V~~~~R~~~ 56 (236)
T 3e8x_A 21 GMRVLVVGANGKVAR-----YLLSELKNKGHEPVAMVRNEE 56 (236)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSGG
T ss_pred CCeEEEECCCChHHH-----HHHHHHHhCCCeEEEEECChH
Confidence 467889988999997 456677789999999987754
No 483
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=76.44 E-value=1.3 Score=34.23 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=17.1
Q ss_pred CCceEEEEEeCCCCchHHHHHHHH
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSIL 48 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~l 48 (276)
++..+|+++ |..|+||||+...+
T Consensus 20 ~~~~~i~v~-G~~~~GKssli~~l 42 (189)
T 2x77_A 20 DRKIRVLML-GLDNAGKTSILYRL 42 (189)
T ss_dssp TSCEEEEEE-EETTSSHHHHHHHT
T ss_pred CCceEEEEE-CCCCCCHHHHHHHH
Confidence 444555554 79999999998776
No 484
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=76.43 E-value=1.6 Score=34.43 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=17.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHH
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA 49 (276)
....+.+-|..|+||||+...|+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34455666899999999987664
No 485
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=76.41 E-value=1.8 Score=38.96 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=26.7
Q ss_pred EEEEEeCCCCchHHHHHHH-HHHHHHhCCCcEEEEe
Q 023886 29 KWVFVGGKGGVGKTTCSSI-LSILLAEVRPSVLIIS 63 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~-lA~~la~~G~kVlliD 63 (276)
+.+++.+.-|.|||.++.- +...+...|.+++++-
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~ 38 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILA 38 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 3467888999999999843 4435667888998886
No 486
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=76.37 E-value=1.7 Score=35.91 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=20.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHH
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLA 53 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la 53 (276)
.++.+-|..|+||||+...++..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5677779999999999998886654
No 487
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=76.34 E-value=2.4 Score=33.54 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=27.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
|+|+++.+.|++|+ .++..|+++|++|.+++-++
T Consensus 1 MkvlVtGatG~iG~-----~l~~~L~~~g~~V~~~~R~~ 34 (221)
T 3ew7_A 1 MKIGIIGATGRAGS-----RILEEAKNRGHEVTAIVRNA 34 (221)
T ss_dssp CEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCS
T ss_pred CeEEEEcCCchhHH-----HHHHHHHhCCCEEEEEEcCc
Confidence 46788888999997 45667778899999998875
No 488
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=76.32 E-value=2.4 Score=34.41 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=29.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
++++++.+-||.|+ .+|..|++.|.+|.+++-++..
T Consensus 3 k~vlVTGas~giG~-----~~a~~l~~~G~~V~~~~r~~~~ 38 (239)
T 2ekp_A 3 RKALVTGGSRGIGR-----AIAEALVARGYRVAIASRNPEE 38 (239)
T ss_dssp CEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCHH
T ss_pred CEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCHHH
Confidence 46778888999997 5677888899999999887643
No 489
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=76.29 E-value=1.4 Score=35.53 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=22.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHHHHHhCCC
Q 023886 29 KWVFVGGKGGVGKTTCSSILSILLAEVRP 57 (276)
Q Consensus 29 ~i~v~s~kGGvGKTT~a~~lA~~la~~G~ 57 (276)
.++.+-|..|+||||+...++..-...|.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl~p~~G~ 51 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQALQSKQ 51 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcCCe
Confidence 45666799999999999999877224553
No 490
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=76.20 E-value=2.5 Score=38.53 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=26.2
Q ss_pred EEEeCCCCchHHHHHHHHHHHHHhCCC-cEEEEe
Q 023886 31 VFVGGKGGVGKTTCSSILSILLAEVRP-SVLIIS 63 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~~la~~G~-kVlliD 63 (276)
.++.+.-|.|||.++..++..+...++ +|+++-
T Consensus 131 ~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~ 164 (510)
T 2oca_A 131 RILNLPTSAGRSLIQALLARYYLENYEGKILIIV 164 (510)
T ss_dssp EEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 566788999999999888887776665 777764
No 491
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=76.18 E-value=1.7 Score=32.48 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=15.7
Q ss_pred EEEeCCCCchHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~ 50 (276)
+++-|..|+||||+...|..
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 35558999999999877753
No 492
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=76.13 E-value=1.7 Score=32.94 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=15.4
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+++-|.+|+||||+...+.
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3556899999999988774
No 493
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=76.07 E-value=1.4 Score=33.85 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=15.2
Q ss_pred EEEeCCCCchHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA 49 (276)
+++-|.+||||||+...+.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 3445799999999988775
No 494
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=76.06 E-value=2.7 Score=34.52 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=29.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCCCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~~~ 68 (276)
+++++++.+-||.|+ .+|..|++.|.+|.++|-++..
T Consensus 6 ~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~~~ 42 (256)
T 2d1y_A 6 GKGVLVTGGARGIGR-----AIAQAFAREGALVALCDLRPEG 42 (256)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSTTH
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChhH
Confidence 356778888999998 4677888999999999887643
No 495
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=76.05 E-value=2.2 Score=35.05 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=28.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 27 ~~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
+++++++.+-+|.|+ .+|..|++.|.+|.++|-+.
T Consensus 7 ~k~~lVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~ 41 (250)
T 3nyw_A 7 KGLAIITGASQGIGA-----VIAAGLATDGYRVVLIARSK 41 (250)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHHTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 456778888999997 56778888999999998764
No 496
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=76.02 E-value=1.8 Score=34.05 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=17.8
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHH
Q 023886 25 QDSLKWVFVGGKGGVGKTTCSSILS 49 (276)
Q Consensus 25 ~~~~~i~v~s~kGGvGKTT~a~~lA 49 (276)
.+..+|+ +-|.+||||||+...+.
T Consensus 23 ~~~~ki~-lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 23 KKTGKLV-FLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp TCCEEEE-EEEETTSSHHHHHHHHS
T ss_pred CCCcEEE-EECCCCCCHHHHHHHHh
Confidence 3445554 55899999999988774
No 497
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=75.99 E-value=1.4 Score=33.00 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=14.1
Q ss_pred EEEeCCCCchHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSIL 48 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~l 48 (276)
+++-|.+||||||+...+
T Consensus 5 i~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 344579999999998766
No 498
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=75.97 E-value=2.6 Score=34.51 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=28.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++++++.+-||.|+ .+|..|++.|.+|.++|-++
T Consensus 8 k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 41 (249)
T 2ew8_A 8 KLAVITGGANGIGR-----AIAERFAVEGADIAIADLVP 41 (249)
T ss_dssp CEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEcCCc
Confidence 56778888999997 46777888999999999876
No 499
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=75.97 E-value=1.8 Score=32.36 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=15.9
Q ss_pred EEEeCCCCchHHHHHHHHHH
Q 023886 31 VFVGGKGGVGKTTCSSILSI 50 (276)
Q Consensus 31 ~v~s~kGGvGKTT~a~~lA~ 50 (276)
+++-|.+||||||+...+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 34558999999999988753
No 500
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=75.96 E-value=2.7 Score=33.88 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=27.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEEecCC
Q 023886 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66 (276)
Q Consensus 28 ~~i~v~s~kGGvGKTT~a~~lA~~la~~G~kVlliD~D~ 66 (276)
++++++.+-||.|+ .+|..|++.|.+|.+++-+.
T Consensus 3 k~vlITGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (235)
T 3l77_A 3 KVAVITGASRGIGE-----AIARALARDGYALALGARSV 36 (235)
T ss_dssp CEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 46678888888887 56778889999999998764
Done!