RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 023886
(276 letters)
>gnl|CDD|217004 pfam02374, ArsA_ATPase, Anion-transporting ATPase. This Pfam
family represents a conserved domain, which is sometimes
repeated, in an anion-transporting ATPase. The ATPase is
involved in the removal of arsenate, antimonite, and
arsenate from the cell.
Length = 304
Score = 304 bits (781), Expect = e-104
Identities = 108/253 (42%), Positives = 152/253 (60%), Gaps = 14/253 (5%)
Query: 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNG 87
++W+F GGKGGVGKTT S ++ L+E VL++STDPAH+LSD+F Q+F PT + G
Sbjct: 1 MRWIFFGGKGGVGKTTVSCATAVRLSEQGKKVLLVSTDPAHSLSDSFNQKFGHEPTKIKG 60
Query: 88 FSNLYAMEVDPSVEEE------------TGSTEGMDSLFSELANAIPGIDEAMSFAEMLK 135
NL AME+DP +E E + ++ + +E +++PGIDE SF E K
Sbjct: 61 VENLSAMEIDPQMELEEYRGEVQDPINAVLGLDMLEGILAEELSSLPGIDEIASFDEFKK 120
Query: 136 LVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDE 195
+ +Y ++FDTAPTGHTLRLL P+ L L+K++ LKN+ G + +
Sbjct: 121 YMDEGEYDVVIFDTAPTGHTLRLLSLPTVLSWYLEKIVKLKNQIGPLAKPFKGMGMGGSC 180
Query: 196 FGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDT 255
E L LE K+ IE+ + DP+ T+F VCIPE +SLYETER +QEL K+ ID
Sbjct: 181 LPE--ALESLEETKEQIEKAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDV 238
Query: 256 HNIIINQVLYDDE 268
+I+NQVL + E
Sbjct: 239 DAVIVNQVLPETE 251
>gnl|CDD|223082 COG0003, ArsA, Predicted ATPase involved in chromosome partitioning
[Cell division and chromosome partitioning].
Length = 322
Score = 221 bits (566), Expect = 3e-71
Identities = 96/254 (37%), Positives = 140/254 (55%), Gaps = 17/254 (6%)
Query: 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVN 86
+ VF GKGGVGKTT ++ ++ LAE VL++STDPAH+L D F P V
Sbjct: 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVG 60
Query: 87 GFSNLYAMEVDPSVE-EETGS-----------TEGMDSLFSELANAIPGIDEAMSFAEML 134
NL A+E+DP EE T G+ ++++ +PGIDEA++ ++L
Sbjct: 61 P--NLDALELDPEKALEEYWDEVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKIL 118
Query: 135 KLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDD 194
+ + +Y IV DTAPTGHTLRLL P L L+K+ K + M+ + L
Sbjct: 119 EYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLGWYLEKLF--KPRRKRMVKALKSLSTAAG 176
Query: 195 -EFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEI 253
+DA+L LE +K+ I V + +PD T+F V IPE LSLYET+R V+ L+ + I
Sbjct: 177 SPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYGI 236
Query: 254 DTHNIIINQVLYDD 267
+I+N++L D+
Sbjct: 237 PVDAVIVNKILPDE 250
>gnl|CDD|232932 TIGR00345, GET3_arsA_TRC40, transport-energizing ATPase,
TRC40/GET3/ArsA family. Members of this family are
ATPases that energize transport, although with different
partner proteins for different functions. Recent
findings show that TRC40 (GET3 in yeast) in involved in
the insertion of tail-anchored membrane proteins in
eukaryotes. A similar function is expected for members
of this family in archaea. However, the earliest
discovery of a function for this protein family is ArsA,
an arsenic resistance protein that partners with ArsB
(see pfam02040) for As(III) efflux [Hypothetical
proteins, Conserved].
Length = 284
Score = 210 bits (535), Expect = 4e-67
Identities = 96/237 (40%), Positives = 132/237 (55%), Gaps = 20/237 (8%)
Query: 45 SSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVE--- 101
S+ +I LAE VL++STDPAH+LSD F+Q TPT V G NL A+E+DP
Sbjct: 2 SAATAIRLAEQGKKVLLVSTDPAHSLSDVFEQEIGHTPTKVTGVENLSAVEIDPQAALEE 61
Query: 102 ---------EETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLV--QTMDYSCIVFDTA 150
+ M E A PGIDE +F E LK + ++ ++FDTA
Sbjct: 62 YRAKLVEQIKGNLPDGDMLGDQLEGAALSPGIDEIAAFDEFLKHMTDAENEFDVVIFDTA 121
Query: 151 PTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKD 210
PTGHTLRLLQ P L L+K + +++K G M +LF E +D L +LE +K+
Sbjct: 122 PTGHTLRLLQLPEVLSSFLEKFIKIRSKLGPMA----KLFMGAGE--DDEALEKLEELKE 175
Query: 211 VIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDD 267
IE + DP+ T+FV V IPE +SLYE+ER +EL K+ I +I+NQVL ++
Sbjct: 176 QIEAAREILSDPERTSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLPEN 232
>gnl|CDD|238992 cd02035, ArsA, ArsA ATPase functionas as an efflux pump located on
the inner membrane of the cell. This ATP-driven oxyanion
pump catalyzes the extrusion of arsenite, antimonite and
arsenate. Maintenance of a low intracellular
concentration of oxyanion produces resistance to the
toxic agents. The pump is composed of two subunits, the
catalytic ArsA subunit and the membrane subunit ArsB,
which are encoded by arsA and arsB genes respectively.
Arsenic efflux in bacteria is catalyzed by either ArsB
alone or by ArsAB complex. The ATP-coupled pump,
however, is more efficient. ArsA is composed of two
homologous halves, A1 and A2, connected by a short
linker sequence.
Length = 217
Score = 207 bits (528), Expect = 6e-67
Identities = 81/246 (32%), Positives = 104/246 (42%), Gaps = 70/246 (28%)
Query: 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH--------NLSDAFQQRFTKT 81
+F GKGGVGKTT ++ ++ LAE VL++STDPAH NLSDAF
Sbjct: 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIV----- 55
Query: 82 PTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMD 141
NLY EVD + E G L ELA A+PGI+E S + +
Sbjct: 56 -EDPEIAPNLYREEVDATRRVERAW-GGEGGLMLELAAALPGIEELASLLAVFREFSEGL 113
Query: 142 YSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDAL 201
Y IVFDTAPTGH TL L
Sbjct: 114 YDVIVFDTAPTGH---------TL----------------------------------RL 130
Query: 202 LGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIIN 261
L V + DP+ T+F V +PE L LYETER + EL + I +++N
Sbjct: 131 L------------VRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVN 178
Query: 262 QVLYDD 267
+VL +
Sbjct: 179 RVLPAE 184
>gnl|CDD|213904 TIGR04291, arsen_driv_ArsA, arsenical pump-driving ATPase. The
broader family (TIGR00345) to which the current family
belongs consists of transport-energizing ATPases,
including to TRC40/GET3 family involved in
post-translational insertion of protein C-terminal
transmembrane anchors into membranes from the cyotosolic
face. This family, however, is restricted to ATPases
that energize pumps that export arsenite (or
antimonite).
Length = 566
Score = 133 bits (336), Expect = 2e-35
Identities = 79/262 (30%), Positives = 114/262 (43%), Gaps = 44/262 (16%)
Query: 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGF 88
++F GKGGVGKT+ + +I LA+ VL++STDPA N+ F Q T + G
Sbjct: 4 PYLFFTGKGGVGKTSIACATAINLADQGKRVLLVSTDPASNVGQVFGQTIGNKITAIAGV 63
Query: 89 SNLYAMEVDP----------SVE--EETGSTEGMDSLFSELANA----IPGIDEAMSFAE 132
L+A+E+DP V+ + + S+ +L+ A I DE
Sbjct: 64 PGLFALEIDPQAAAQAYRARIVDPVRGVLPDDVVSSIEEQLSGACTTEIAAFDEFTGLLT 123
Query: 133 MLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGI 192
+L Q D+ I+FDTAPTGHT+RLLQ P LD N G
Sbjct: 124 DAELTQDFDH--IIFDTAPTGHTIRLLQLPGAWSDFLDT-----NPNGA----------- 165
Query: 193 DDEFGEDALLGRLEGMKDVIERVNKQFK---DPDLTTFVCVCIPEFLSLYETERLVQELT 249
+ LG L G++ + K + DP+ T + V P+ +L E R QEL
Sbjct: 166 -------SCLGPLAGLEKQRAQYAKAVEALSDPERTRLILVARPQKSTLLEVARTHQELA 218
Query: 250 KFEIDTHNIIINQVLYDDEGMH 271
+ ++IN VL E
Sbjct: 219 AIGLKNQYLVINGVLPPTEASD 240
Score = 69.0 bits (169), Expect = 3e-13
Identities = 64/257 (24%), Positives = 102/257 (39%), Gaps = 62/257 (24%)
Query: 23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTP 82
+ + + GKGGVGKTT ++ +++ LA V + ++DPA +LS T T
Sbjct: 316 IAKSEKGLIMTMGKGGVGKTTVAAAIAVRLANKGLDVHLTTSDPAAHLS------VTLTG 369
Query: 83 TLVNGFSNLYAMEVDPSVEEE---------TGST---EGMDSLFSELANAIPGIDEAMSF 130
+L +NL +DP E E G +G L +L + P +E F
Sbjct: 370 SL----NNLQVSRIDPKQETERYRQEVLATKGKELDEDGKAYLEEDLRS--PCTEEIAVF 423
Query: 131 AEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLF 190
++++ +V DTAPTGHTL LL + +++ M
Sbjct: 424 QAFSRIIREAGDRFVVMDTAPTGHTLLLLDATGAYHREVERKMG---------------- 467
Query: 191 GIDDEFGEDALLGRLEGMKDVIERVNK---QFKDPDLTTFVCVCIPEFLSLYETERLVQE 247
D E V Q +DP+ T + V +PE + E RL ++
Sbjct: 468 -------------------DTPEHVTTPMMQLQDPERTKVLLVTLPETTPVLEAARLQED 508
Query: 248 LTKFEIDTHNIIINQVL 264
L + I+ +IN L
Sbjct: 509 LRRAGIEPWWWVINNSL 525
>gnl|CDD|224113 COG1192, Soj, ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning].
Length = 259
Score = 52.9 bits (127), Expect = 3e-08
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 11/129 (8%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRP-SVLIISTDPAHNLSDAFQQRFTKTPTLVNGFS 89
KGGVGKTT + L+ LA+ VL+I DP +L+ R L ++
Sbjct: 6 AVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPDLEGDL---YN 62
Query: 90 NLYAMEVDPSVEEETGSTEGMD------SLFSELANAIPGIDEAMSFAEMLKLVQTMDYS 143
L ++ P + + T EG+D L + + + + +L V+ DY
Sbjct: 63 LLSGLKERPDILDYTVVIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVK-DDYD 121
Query: 144 CIVFDTAPT 152
I+ DT P+
Sbjct: 122 YIIIDTPPS 130
>gnl|CDD|216631 pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain.
This family consists of various cobyrinic acid
a,c-diamide synthases. These include CbiA and CbiP from
S.typhimurium, and CobQ from R. capsulatus. These
amidases catalyze amidations to various side chains of
hydrogenobyrinic acid or cobyrinic acid a,c-diamide in
the biosynthesis of cobalamin (vitamin B12) from
uroporphyrinogen III. Vitamin B12 is an important
cofactor and an essential nutrient for many plants and
animals and is primarily produced by bacteria. The
family also contains dethiobiotin synthetases as well as
the plasmid partitioning proteins of the MinD/ParA
family.
Length = 217
Score = 47.8 bits (114), Expect = 1e-06
Identities = 31/133 (23%), Positives = 45/133 (33%), Gaps = 15/133 (11%)
Query: 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTP-TLVNGF 88
G KGGVGKTT ++ L+ LA+ VL+I DP N S + P L
Sbjct: 1 IAIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANNSSYLGKVEEVLPEGLEIVD 60
Query: 89 SNLYAMEVDPSVEEETGSTEGMDSL-----FSELANA----IPGIDEAMSFAEMLKLVQT 139
+ V + +D L L N I L+ +
Sbjct: 61 AQALQAIAAAIVP-----SRNLDPLLLIPSNLSLENFESELIVEGKRESRLRAALESLIK 115
Query: 140 MDYSCIVFDTAPT 152
+ Y ++ D P
Sbjct: 116 LAYDYVIIDGPPG 128
>gnl|CDD|238941 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety
of proteins which share a common ATP-binding domain.
Functionally, proteins in this superfamily use the
energy from hydrolysis of NTP to transfer electron or
ion.
Length = 99
Score = 43.2 bits (102), Expect = 9e-06
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLII 62
+ V GKGGVGKTT ++ L+ LA+ VL+I
Sbjct: 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLI 33
>gnl|CDD|238991 cd02034, CooC, The accessory protein CooC, which contains a
nucleotide-binding domain (P-loop) near the N-terminus,
participates in the maturation of the nickel center of
carbon monoxide dehydrogenase (CODH). CODH from
Rhodospirillum rubrum catalyzes the reversible
oxidation of CO to CO2. CODH contains a
nickel-iron-sulfur cluster (C-center) and an
iron-sulfur cluster (B-center). CO oxidation occurs at
the C-center. Three accessory proteins encoded by
cooCTJ genes are involved in nickel incorporation into
a nickel site. CooC functions as a nickel insertase
that mobilizes nickel to apoCODH using energy released
from ATP hydrolysis. CooC is a homodimer and has NTPase
activities. Mutation at the P-loop abolishs its
function.
Length = 116
Score = 43.0 bits (102), Expect = 2e-05
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF 74
+ GKGGVGKTT +++L+ LAE VL I DP +L +
Sbjct: 4 ITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPD-DLPERL 44
>gnl|CDD|222264 pfam13614, AAA_31, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 145
Score = 43.4 bits (103), Expect = 2e-05
Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 14/125 (11%)
Query: 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFS 89
GG GKTT + L+ LAE P VL + + F G S
Sbjct: 3 IGVYSPVGGEGKTTFALNLAQSLAEEGPKVLYLDLEEYS----GDLALFLGLEP--KGLS 56
Query: 90 N-LYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTM--DYSCIV 146
+ LY ++ ++ G + N +S E +L++ + Y IV
Sbjct: 57 DLLYYLK---RLDSMLIQAMGGLDYLAPPRNPED--LREVSPEEWEQLLERLRERYDVIV 111
Query: 147 FDTAP 151
D P
Sbjct: 112 LDLGP 116
>gnl|CDD|238997 cd02042, ParA, ParA and ParB of Caulobacter crescentus belong to
a conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the initiation of
DNA replication. ParB regulates the ParA ATPase
activity by promoting nucleotide exchange in a fashion
reminiscent of the exchange factors of eukaryotic G
proteins. ADP-bound ParA binds single-stranded DNA,
whereas the ATP-bound form dissociates ParB from its
DNA binding sites. Increasing the fraction of ParA-ADP
in the cell inhibits cell division, suggesting that
this simple nucleotide switch may regulate cytokinesis.
ParA shares sequence similarity to a conserved and
widespread family of ATPases which includes the repA
protein of the repABC operon in R. etli Sym plasmid.
This operon is involved in the plasmid replication and
partition.
Length = 104
Score = 40.7 bits (96), Expect = 8e-05
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
KGGVGKTT + L+ LA VL+I DP
Sbjct: 3 AVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDP 38
>gnl|CDD|238993 cd02036, MinD, Bacterial cell division requires the formation of
a septum at mid-cell. The site is determined by the min
operon products MinC, MinD and MinE. MinC is a
nonspecific inhibitor of the septum protein FtsZ. MinE
is the supressor of MinC. MinD plays a pivotal role,
selecting the mid-cell over other sites through the
activation and regulation of MinC and MinE. MinD is a
membrane-associated ATPase, related to nitrogenase iron
protein. More distantly related proteins include
flagellar biosynthesis proteins and ParA chromosome
partitioning proteins. MinD is a monomer.
Length = 179
Score = 41.8 bits (99), Expect = 9e-05
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67
V GKGGVGKTT ++ L LA++ V++I D
Sbjct: 3 VVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLG 39
>gnl|CDD|238995 cd02038, FleN-like, FleN is a member of the Fer4_NifH
superfamily. It shares the common function as an
ATPase, with the ATP-binding domain at the N-terminus.
In Pseudomonas aeruginosa, FleN gene is involved in
regulating the number of flagella and chemotactic
motility by influencing FleQ activity.
Length = 139
Score = 40.6 bits (96), Expect = 1e-04
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
GKGGVGKT S+ L++ LA++ VL++ D
Sbjct: 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDAD 37
>gnl|CDD|237293 PRK13185, chlL, protochlorophyllide reductase iron-sulfur
ATP-binding protein; Provisional.
Length = 270
Score = 41.1 bits (97), Expect = 3e-04
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLV 85
V GKGG+GK+T SS LS A++ VL I DP H+ + FT T LV
Sbjct: 7 VYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDST------FTLTGKLV 53
>gnl|CDD|238989 cd02032, Bchl_like, This family of proteins contains bchL and
chlL. Protochlorophyllide reductase catalyzes the
reductive formation of chlorophyllide from
protochlorophyllide during biosynthesis of chlorophylls
and bacteriochlorophylls. Three genes, bchL, bchN and
bchB, are involved in light-independent
protochlorophyllide reduction in bacteriochlorophyll
biosynthesis. In cyanobacteria, algae, and gymnosperms,
three similar genes, chlL, chlN and chlB are involved
in protochlorophyllide reduction during chlorophylls
biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB
exhibit significant sequence similarity to the nifH,
nifD and nifK subunits of nitrogenase, respectively.
Nitrogenase catalyzes the reductive formation of
ammonia from dinitrogen.
Length = 267
Score = 40.8 bits (96), Expect = 3e-04
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
V GKGG+GK+T SS LS+ LA+ VL I DP H+
Sbjct: 5 VYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHD 41
>gnl|CDD|239034 cd02117, NifH_like, This family contains the NifH (iron protein)
of nitrogenase, L subunit (BchL/ChlL) of the
protochlorophyllide reductase and the BchX subunit of
the Chlorophyllide reductase. Members of this family
use energey from ATP hydrolysis and transfer electrons
through a Fe4-S4 cluster to other subunit for reduction
of substrate.
Length = 212
Score = 40.3 bits (95), Expect = 4e-04
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
GKGG+GK+T S LS LAE+ VL + DP
Sbjct: 7 GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKA 40
>gnl|CDD|223531 COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an
ATPase [Cell motility].
Length = 262
Score = 40.3 bits (95), Expect = 5e-04
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 32 FVGGKGGVGKTTCSSILSILLAEVRPS-VLIISTDPA-HNLSDAF 74
V GKGGVGKTT ++ L LA + VL+I D NLS
Sbjct: 7 VVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLL 51
>gnl|CDD|226166 COG3640, CooC, CO dehydrogenase maturation factor [Cell division
and chromosome partitioning].
Length = 255
Score = 39.9 bits (94), Expect = 6e-04
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRP-SVLIISTDPAHNLSDAF 74
+ GKGGVGKTT +++L L +VL++ DP NL +A
Sbjct: 5 ITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEAL 47
>gnl|CDD|130348 TIGR01281, DPOR_bchL, light-independent protochlorophyllide
reductase, iron-sulfur ATP-binding protein. The BchL
peptide (ChlL in chloroplast and cyanobacteria) is an
ATP-binding iron-sulfur protein of the dark form
protochlorophyllide reductase, an enzyme similar to
nitrogenase. This subunit resembles the nitrogenase
NifH subunit [Biosynthesis of cofactors, prosthetic
groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 268
Score = 38.6 bits (90), Expect = 0.002
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
V GKGG+GK+T SS LS+ A++ VL I DP H+
Sbjct: 5 VYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHD 41
>gnl|CDD|224267 COG1348, NifH, Nitrogenase subunit NifH (ATPase) [Inorganic ion
transport and metabolism].
Length = 278
Score = 38.5 bits (90), Expect = 0.002
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
GKGG+GK+T S L+ LAE+ VLI+ DP
Sbjct: 8 GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKA 41
>gnl|CDD|177011 CHL00072, chlL, photochlorophyllide reductase subunit L.
Length = 290
Score = 38.6 bits (90), Expect = 0.002
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
V GKGG+GK+T S +SI LA VL I DP H+
Sbjct: 5 VYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHD 41
>gnl|CDD|131024 TIGR01969, minD_arch, cell division ATPase MinD, archaeal. This
model represents the archaeal branch of the MinD
family. MinD, a weak ATPase, works in bacteria with
MinC as a generalized cell division inhibitor and,
through interaction with MinE, prevents septum
placement inappropriate sites. Often several members of
this family are found in archaeal genomes, and the
function is uncharacterized. More distantly related
proteins include flagellar biosynthesis proteins and
ParA chromosome partitioning proteins. The exact roles
of the various archaeal MinD homologs are unknown.
Length = 251
Score = 38.2 bits (89), Expect = 0.003
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH-NLS 71
GKGG GKTT ++ L + LA++ VL + D NL
Sbjct: 4 TIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLE 45
>gnl|CDD|234188 TIGR03371, cellulose_yhjQ, cellulose synthase operon protein
YhjQ. Members of this family are the YhjQ protein,
found immediately upsteam of bacterial cellulose
synthase (bcs) genes in a broad range of bacteria,
including both copies of the bcs locus in Klebsiella
pneumoniae. In several species it is seen clearly as
part of the bcs operon. It is identified as a probable
component of the bacterial cellulose metabolic process
not only by gene location, but also by partial
phylogenetic profiling, or Haft-Selengut algorithm
(PMID:16930487), based on a bacterial cellulose
biosynthesis genome property profile. Cellulose plays
an important role in biofilm formation and structural
integrity in some bacteria. Mutants in yhjQ in
Escherichia coli, show altered morphology an growth,
but the function of YhjQ has not yet been determined
[Cell envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 246
Score = 37.7 bits (88), Expect = 0.003
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSN 90
V +GGVGKTT ++ L+ L + VL I DP + L F ++ N
Sbjct: 7 VSVRGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLN 64
>gnl|CDD|201032 pfam00142, Fer4_NifH, 4Fe-4S iron sulfur cluster binding
proteins, NifH/frxC family.
Length = 272
Score = 37.7 bits (88), Expect = 0.003
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
GKGG+GK+T + S LAE+ VLI+ DP +
Sbjct: 7 GKGGIGKSTTTQNTSAALAEMGKKVLIVGCDPKAD 41
>gnl|CDD|183903 PRK13230, PRK13230, nitrogenase reductase-like protein; Reviewed.
Length = 279
Score = 36.3 bits (84), Expect = 0.010
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGF 88
GKGG+GK+T ++ LAE VL++ DP + + K PT+++
Sbjct: 8 GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGE--KIPTVLDVL 59
>gnl|CDD|238994 cd02037, MRP-like, MRP (Multiple Resistance and pH adaptation) is
a homologue of the Fer4_NifH superfamily. Like the
other members of the superfamily, MRP contains a
ATP-binding domain at the N-termini. It is found in
bacteria as a membrane-spanning protein and functions
as a Na+/H+ antiporter.
Length = 169
Score = 35.5 bits (83), Expect = 0.011
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
GKGGVGK+T + L++ LA++ V ++ D
Sbjct: 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37
>gnl|CDD|238996 cd02040, NifH, NifH gene encodes component II (iron protein) of
nitrogenase. Nitrogenase is responsible for the
biological nitrogen fixation, i.e. reduction of
molecular nitrogen to ammonia. NifH consists of two
oxygen-sensitive metallosulfur proteins: the
mollybdenum-iron (alternatively, vanadium-iron or
iron-iron) protein (commonly referred to as component
1), and the iron protein (commonly referred to as
component 2). The iron protein is a homodimer, with an
Fe4S4 cluster bound between the subunits and two
ATP-binding domains. It supplies energy by ATP
hydrolysis, and transfers electrons from reduced
ferredoxin or flavodoxin to component 1 for the
reduction of molecular nitrogen to ammonia.
Length = 270
Score = 36.1 bits (84), Expect = 0.012
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
GKGG+GK+T + LS LAE+ V+I+ DP
Sbjct: 8 GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKA 41
>gnl|CDD|222854 PHA02518, PHA02518, ParA-like protein; Provisional.
Length = 211
Score = 35.6 bits (82), Expect = 0.016
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77
KGG GKTT ++ L+ L VL++ DP + +D + R
Sbjct: 9 KGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAR 50
>gnl|CDD|225447 COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell
division and chromosome partitioning].
Length = 272
Score = 35.7 bits (83), Expect = 0.017
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
V GKGGVGKTT ++ + LA++ V++I D
Sbjct: 6 VVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40
>gnl|CDD|131023 TIGR01968, minD_bact, septum site-determining protein MinD. This
model describes the bacterial and chloroplast form of
MinD, a multifunctional cell division protein that
guides correct placement of the septum. The homologous
archaeal MinD proteins, with many archaeal genomes
having two or more forms, are described by a separate
model [Cellular processes, Cell division].
Length = 261
Score = 35.4 bits (82), Expect = 0.019
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
V GKGGVGKTT ++ L LA + V++I D
Sbjct: 5 VITSGKGGVGKTTTTANLGTALARLGKKVVLIDAD 39
>gnl|CDD|223563 COG0489, Mrp, ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning].
Length = 265
Score = 35.1 bits (81), Expect = 0.026
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLY 92
GKGGVGK+T + L+ LA++ VL++ D L R L G + L
Sbjct: 63 TSGKGGVGKSTVAVNLAAALAQLGKRVLLLDAD----LRGPSIPRMLGLENL-PGLTELL 117
Query: 93 AMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMS---FAEMLKLVQTMDYSCIVFDT 149
A E V + G + + L IP + ++L+ V +Y ++ DT
Sbjct: 118 AGEALEPVIQHDGI-KVLSILPLGPVPVIP--RGLLGSKAMLQLLEDVLWGEYDYVIIDT 174
Query: 150 AP 151
P
Sbjct: 175 PP 176
>gnl|CDD|239384 cd03110, Fer4_NifH_child, This protein family's function is
unkown. It contains nucleotide binding site. It uses
NTP as energy source to transfer electron or ion.
Length = 179
Score = 34.1 bits (79), Expect = 0.031
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEV 55
+ GKGG GKTT ++ L+ LL V
Sbjct: 3 AVISGKGGTGKTTVTAALAALLKNV 27
>gnl|CDD|224071 COG1149, COG1149, MinD superfamily P-loop ATPase containing an
inserted ferredoxin domain [Energy production and
conversion].
Length = 284
Score = 35.0 bits (81), Expect = 0.032
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 29 KWVFV-GGKGGVGKTTCSSILSILLAEVRPSVLI 61
V V GKGG GKTT ++ L++LL + VL
Sbjct: 2 MQVAVASGKGGTGKTTVAANLAVLLGDKYKLVLA 35
>gnl|CDD|238990 cd02033, BchX, Chlorophyllide reductase converts chlorophylls
into bacteriochlorophylls by reducing the chlorin
B-ring. This family contains the X subunit of this
three-subunit enzyme. Sequence and structure similarity
between bchX, protochlorophyllide reductase L subunit
(bchL and chlL) and nitrogenase Fe protein (nifH gene)
suggest their functional similarity. Members of the
BchX family serve as the unique electron donors to
their respective catalytic subunits (bchN-bchB,
bchY-bchZ and nitrogenase component 1).
Mechanistically, they hydrolyze ATP and transfer
electrons through a Fe4-S4 cluster.
Length = 329
Score = 34.9 bits (80), Expect = 0.033
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 4 EDQDQDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63
+ ++ LEIP + + + GKGG+GK+ + LS ++A+ VL+I
Sbjct: 12 NEAAEEPTLEIPTAPPTK-----KTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIG 66
Query: 64 TDPAHNLSDAFQQRF--TKTPTLV 85
DP SD F PT++
Sbjct: 67 CDPK---SDTTSLLFGGKACPTII 87
>gnl|CDD|233343 TIGR01287, nifH, nitrogenase iron protein. This model describes
nitrogenase (EC 1.18.6.1) iron protein, also called
nitrogenase reductase or nitrogenase component II. This
model includes molybdenum-iron nitrogenase reductase
(nifH), vanadium-iron nitrogenase reductase (vnfH), and
iron-iron nitrogenase reductase (anfH). The model
excludes the homologous protein from the
light-independent protochlorophyllide reductase
[Central intermediary metabolism, Nitrogen fixation].
Length = 275
Score = 34.7 bits (80), Expect = 0.037
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
GKGG+GK+T + ++ LAE+ V+I+ DP +
Sbjct: 7 GKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKAD 41
>gnl|CDD|214385 CHL00175, minD, septum-site determining protein; Validated.
Length = 281
Score = 33.6 bits (77), Expect = 0.084
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 21 NILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
S V GKGGVGKTT ++ L + +A + V +I D
Sbjct: 9 EKSATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 53
>gnl|CDD|233686 TIGR02016, BchX, chlorophyllide reductase iron protein subunit X.
This model represents the X subunit of the
three-subunit enzyme, (bacterio)chlorophyllide
reductase. This enzyme is responsible for the reduction
of the chlorin B-ring and is closely related to the
protochlorophyllide reductase complex which reduces the
D-ring. Both of these complexes in turn are homologous
to nitrogenase. This subunit is homologous to the
nitrogenase component II, or "iron" protein [Energy
metabolism, Photosynthesis].
Length = 296
Score = 33.3 bits (76), Expect = 0.12
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA 73
GKGG GK+ ++ LS ++AE+ VL + DP H+ +
Sbjct: 7 GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSL 45
>gnl|CDD|238983 cd02025, PanK, Pantothenate kinase (PanK) catalyzes the
phosphorylation of pantothenic acid to form
4'-phosphopantothenic, which is the first of five steps
in coenzyme A (CoA) biosynthetic pathway. The reaction
carried out by this enzyme is a key regulatory point in
CoA biosynthesis.
Length = 220
Score = 31.9 bits (73), Expect = 0.23
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 33 VGGKGGVGKTTCSSILSILLAEV--RPSVLIISTD 65
+ G VGK+T + +L LL+ P+V +I+TD
Sbjct: 4 IAGSVAVGKSTTARVLQALLSRWPDHPNVELITTD 38
>gnl|CDD|235466 PRK05439, PRK05439, pantothenate kinase; Provisional.
Length = 311
Score = 31.7 bits (73), Expect = 0.38
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 39 VGKTTCSSILSILLA--EVRPSVLIISTD 65
VGK+T + +L LL+ P V +++TD
Sbjct: 97 VGKSTTARLLQALLSRWPEHPKVELVTTD 125
>gnl|CDD|183906 PRK13234, nifH, nitrogenase reductase; Reviewed.
Length = 295
Score = 31.3 bits (71), Expect = 0.44
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
GKGG+GK+T S L E+ +LI+ DP
Sbjct: 11 GKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42
>gnl|CDD|219580 pfam07793, DUF1631, Protein of unknown function (DUF1631). The
members of this family are sequences derived from a
group of hypothetical proteins expressed by certain
bacterial species. The region concerned is approximately
440 amino acid residues in length.
Length = 729
Score = 31.5 bits (72), Expect = 0.57
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 193 DDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELT 249
DD+ D+L + ++++++R+ +F D D + F + + EF + E ER EL
Sbjct: 417 DDDGLRDSLYAK---IEEIVQRILNEFDD-DPSLFAEL-LEEFQAFLEQERRRSELV 468
>gnl|CDD|183270 PRK11670, PRK11670, antiporter inner membrane protein; Provisional.
Length = 369
Score = 31.2 bits (71), Expect = 0.58
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
V+NI+ S GKGGVGK++ + L++ LA V I+ D
Sbjct: 106 VKNIIAVSS-------GKGGVGKSSTAVNLALALAAEGAKVGILDAD 145
>gnl|CDD|237312 PRK13236, PRK13236, nitrogenase reductase; Reviewed.
Length = 296
Score = 31.1 bits (70), Expect = 0.60
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
GKGG+GK+T S +AE+ +LI+ DP
Sbjct: 13 GKGGIGKSTTSQNTLAAMAEMGQRILIVGCDP 44
>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of
Chloroplasts 34-like (Toc34-like). The Toc34-like
(Translocon at the Outer-envelope membrane of
Chloroplasts) family contains several Toc proteins,
including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125,
and Toc90. The Toc complex at the outer envelope
membrane of chloroplasts is a molecular machine of ~500
kDa that contains a single Toc159 protein, four Toc75
molecules, and four or five copies of Toc34. Toc64 and
Toc12 are associated with the translocon, but do not
appear to be part of the core complex. The Toc
translocon initiates the import of nuclear-encoded
preproteins from the cytosol into the organelle. Toc34
and Toc159 are both GTPases, while Toc75 is a
beta-barrel integral membrane protein. Toc159 is
equally distributed between a soluble cytoplasmic form
and a membrane-inserted form, suggesting that assembly
of the Toc complex is dynamic. Toc34 and Toc75 act
sequentially to mediate docking and insertion of Toc159
resulting in assembly of the functional translocon.
Length = 248
Score = 30.7 bits (70), Expect = 0.64
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 31 VFVGGKGGVGK-TTCSSILSILLAEVRPSVLIISTDPAHNLS---DAFQQRFTKTPTLVN 86
+ V GK GVGK +T +SI V S T +S D F+ TP L+
Sbjct: 34 ILVLGKTGVGKSSTINSIFGERKVSV--SAFQSETLRPREVSRTVDGFKLNIIDTPGLLE 91
Query: 87 G 87
Sbjct: 92 S 92
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 31.0 bits (70), Expect = 0.72
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 23 LEQDSLK--WVFVGGKGGVGKTTCSSILS 49
LEQ L ++F G +G VGKTT S IL+
Sbjct: 32 LEQQRLHHAYLFTGTRG-VGKTTLSRILA 59
>gnl|CDD|234757 PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase;
Provisional.
Length = 461
Score = 30.9 bits (71), Expect = 0.73
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 40 GKTTCSSILSILLAEVR--PSVLI 61
GKTT +S+L+ +LAE P+ LI
Sbjct: 117 GKTTTTSLLAHVLAEAGLDPTFLI 140
>gnl|CDD|130080 TIGR01007, eps_fam, capsular exopolysaccharide family. This model
describes the capsular exopolysaccharide proteins in
bacteria. The exopolysaccharide gene cluster consists of
several genes which encode a number of proteins which
regulate the exoploysaccharide biosynthesis(EPS).
Atleast 13 genes espA to espM in streptococcus species
seem to direct the EPS proteins and all of which share
high homology. Functional roles were characterized by
gene disruption experiments which resulted in
exopolysaccharide-deficient phenotypes [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 204
Score = 30.5 bits (69), Expect = 0.75
Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAME 95
K G GK+T S+ +++ A+ L+I D + ++ K+ + G +N +
Sbjct: 26 KPGEGKSTTSANIAVAFAQAGYKTLLIDGD----MRNSVMSGTFKSQNKITGLTNFLSGT 81
Query: 96 VDPSVEEETGSTEGMDSLFSELANAIPGIDEAM----SFAEMLKLVQTMDYSCIVFDTAP 151
D + + T +++LF + +P + +F +++ ++ + I+ DT P
Sbjct: 82 TD--LSDAICDTN-IENLFVITSGPVPPNPTELLQSSNFKTLIETLRKY-FDYIIIDTPP 137
Query: 152 TG 153
G
Sbjct: 138 IG 139
>gnl|CDD|168652 PRK06714, PRK06714, S-adenosylhomocysteine nucleosidase;
Validated.
Length = 236
Score = 30.7 bits (69), Expect = 0.77
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 38 GVGKTTCSSILSILLAEVRPSVLIIS 63
GVGK +C+S + +L++E +P L ++
Sbjct: 50 GVGKVSCASCVQLLISEFQPDELFMT 75
>gnl|CDD|182756 PRK10818, PRK10818, cell division inhibitor MinD; Provisional.
Length = 270
Score = 30.3 bits (68), Expect = 1.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
V GKGGVGKTT S+ ++ LA+ ++I D
Sbjct: 6 VVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40
>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like)
is a family of proteins highly similar to the uridine
monophosphate kinase (UMPK, EC 2.7.1.48), also known as
uridine kinase or uridine-cytidine kinase (UCK).
Length = 179
Score = 29.6 bits (67), Expect = 1.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
V + G G GKTT + LS L ++IS D
Sbjct: 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLD 36
>gnl|CDD|106194 PRK13232, nifH, nitrogenase reductase; Reviewed.
Length = 273
Score = 30.0 bits (67), Expect = 1.3
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
++ + + GKGG+GK+T + L+ L+ + +L++ DP
Sbjct: 1 MRQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDP 39
>gnl|CDD|220125 pfam09140, MipZ, ATPase MipZ. MipZ is an ATPase that forms a
complex with the chromosome partitioning protein ParB
near the chromosomal origin of replication. It is
responsible for the temporal and spatial regulation of
FtsZ ring formation.
Length = 262
Score = 29.6 bits (67), Expect = 1.4
Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 30/132 (22%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS-------DAFQQRFTKTPT 83
V KGG GK+T + +++ L + V I D A+ +R T
Sbjct: 4 VVGNEKGGSGKSTTAVHVAVALLYLGARVATIDLDLRQRTLTRYFENRAAWAER-TGLDL 62
Query: 84 LVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYS 143
V L EV + E+ +++ ++L +
Sbjct: 63 PVPKHLCLPDGEVSEVFDGESADDARLEAAVADLE---------------------QEAD 101
Query: 144 CIVFDTAPTGHT 155
IV DT P +
Sbjct: 102 FIVIDT-PGSDS 112
>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism].
Length = 283
Score = 29.5 bits (67), Expect = 1.5
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAE--VRPSVLIISTD 65
+ + G VGK+T + IL LL+ P V +++ D
Sbjct: 85 IGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMD 121
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of
the transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides,
while the LolCDE system is not a transporter at all. An
FtsE null mutants showed filamentous growth and
appeared viable on high salt medium only, indicating a
role for FtsE in cell division and/or salt transport.
The LolCDE complex catalyzes the release of
lipoproteins from the cytoplasmic membrane prior to
their targeting to the outer membrane.
Length = 218
Score = 29.4 bits (67), Expect = 1.6
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF 78
+V + G G GK+T +IL L V + TD LS+ F
Sbjct: 32 FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTD-ISKLSEKELAAF 79
>gnl|CDD|139929 PRK13869, PRK13869, plasmid-partitioning protein RepA; Provisional.
Length = 405
Score = 29.6 bits (66), Expect = 1.8
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
KGG GKTT S+ L+ LA VL + DP +LS
Sbjct: 130 KGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLS 165
>gnl|CDD|217645 pfam03629, DUF303, Domain of unknown function (DUF303).
Distribution of this domain seems limited to prokaryotes
and viruses.
Length = 257
Score = 29.2 bits (66), Expect = 1.8
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 208 MKDVIERVNKQFKDPDLTTFVCVCIPEFLS 237
+K +IE K + PDL F V + FL
Sbjct: 169 LKALIEDWRKDWGQPDL-PFYFVQLAPFLK 197
>gnl|CDD|226126 COG3598, RepA, RecA-family ATPase [DNA replication, recombination,
and repair].
Length = 402
Score = 29.5 bits (66), Expect = 1.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAE 54
+ G GVGKTT L I LA
Sbjct: 92 SILYGDSGVGKTTLLLYLCIALAA 115
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 30.0 bits (67), Expect = 2.0
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTP 82
G G GKTT SIL+ LL +VL+ D NL DA +Q P
Sbjct: 963 GHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNL-DAVRQSLGMCP 1009
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 29.0 bits (65), Expect = 2.4
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 26 DSLKWVFVGGKGGVGKTTCS--SILSILLAEVRPSVLIISTDP----AHNLSDAFQQRFT 79
L+ V + G GKT + L L VL++ P A ++ ++
Sbjct: 22 SGLRDVILAAPTGSGKTLAALLPALEALKRGKGGRVLVLV--PTRELAEQWAEELKKLGP 79
Query: 80 KTPTLVNGF 88
V G
Sbjct: 80 SLGLKVVGL 88
>gnl|CDD|226648 COG4185, COG4185, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 187
Score = 28.6 bits (64), Expect = 2.6
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
V G G GK+T + + LA + P ++ ++ D
Sbjct: 7 VAGPNGSGKST---VYASTLAPLLPGIVFVNAD 36
>gnl|CDD|183907 PRK13235, nifH, nitrogenase reductase; Reviewed.
Length = 274
Score = 28.6 bits (64), Expect = 2.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
GKGG+GK+T + LAE+ V+++ DP
Sbjct: 8 GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDP 39
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1,
2, 3, 4 family. These eukaryotic proteins recognize the
poly-A of mRNA and consists of four tandem RNA
recognition domains at the N-terminus (rrm: pfam00076)
followed by a PABP-specific domain (pfam00658) at the
C-terminus. The protein is involved in the transport of
mRNA's from the nucleus to the cytoplasm. There are four
paralogs in Homo sapiens which are expressed in testis
(GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ),
broadly expressed (SP:P11940_PABP1) and of unknown
tissue range (SP:Q15097_PABP2).
Length = 562
Score = 29.0 bits (65), Expect = 3.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 74 FQQRFTKTPTLVNGFSNLYAMEVDPSVEEE 103
F ++ + + F+NLY +DPSV E+
Sbjct: 164 FIKKHEREAAPLKKFTNLYVKNLDPSVNED 193
>gnl|CDD|184370 PRK13886, PRK13886, conjugal transfer protein TraL; Provisional.
Length = 241
Score = 28.5 bits (64), Expect = 3.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
GKGGVGK+ ++ ++ A L I TDP
Sbjct: 10 GKGGVGKSFIAATIAQYKASKGQKPLCIDTDP 41
>gnl|CDD|183904 PRK13231, PRK13231, nitrogenase reductase-like protein; Reviewed.
Length = 264
Score = 28.6 bits (64), Expect = 3.3
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
+K + + GKGG+GK+T S ++ + VL+I DP
Sbjct: 2 MKKIAIYGKGGIGKSTTVSNMAAAYSN-DHRVLVIGCDP 39
>gnl|CDD|239385 cd03111, CpaE_like, This protein family consists of proteins
similar to the cpaE protein of the Caulobacter pilus
assembly and the orf4 protein of Actinobacillus pilus
formation gene cluster. The function of these proteins
are unkown. The Caulobacter pilus assembly contains 7
genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF.
These genes are clustered together on chromosome.
Length = 106
Score = 27.3 bits (61), Expect = 3.3
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRP-SVLIISTD 65
F+G KGGVG TT ++ L++ LA+ VL++ D
Sbjct: 3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD 38
>gnl|CDD|224428 COG1511, COG1511, Predicted membrane protein [Function unknown].
Length = 780
Score = 28.6 bits (64), Expect = 3.7
Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 32/155 (20%)
Query: 8 QDQELEIPEGSVRNILEQDSLKWVFV-------GGKGG-------VGKTTCSSILSILLA 53
+++ I + V+ + + SL W FV G K G + K + LS+
Sbjct: 63 NGKKVNIGDDLVKTLKKNKSLDWHFVSREEAEKGLKDGKYYAVIYIPKDFSKNALSLTNK 122
Query: 54 EVRPSVLIISTDPAHN-------------LSDAFQQRFTKTPTLVNGFSNLYAMEVDPSV 100
+ + + + N L + + T+T T V F +Y +
Sbjct: 123 TPKKATIDYKVNEKLNAVAPKITEKAADKLLNEISKELTETYTKVVAFPTIYDLG----- 177
Query: 101 EEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLK 135
G+ +G + L A G + L
Sbjct: 178 GGVKGAADGAEKLKDGTDEASNGNKKLSDLLNTLN 212
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 28.7 bits (64), Expect = 3.8
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 105 GSTEGMDSLFSELANA----IPGIDEAMSFAEMLKLVQTM----DYSCIVFDTAPTGHTL 156
G+TE M+SL+ PG + + + +V A T
Sbjct: 302 GTTEAMNSLYMRDPRTGTEMRPGFFSEVRIVRIGGSPDEALPNGEEGELVVAAADATFTG 361
Query: 157 RLLQFPSTLEKGLD 170
L Q +T EK D
Sbjct: 362 YLNQPQATAEKLQD 375
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain.
Length = 285
Score = 28.4 bits (64), Expect = 4.1
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 16 EGSVRNILEQ-----DSLKWVFVGGKGGVGKTT 43
E + ++E+ D+L V + G GGVGKTT
Sbjct: 2 EDMIEALIEKLLEMSDNLGVVGIVGMGGVGKTT 34
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 28.4 bits (64), Expect = 4.1
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 10 QELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILS 49
+ L +R +E L + + G G GKTT + +++
Sbjct: 30 EHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIA 69
>gnl|CDD|234363 TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood
CpaE-like protein. Members of this protein family
belong to the MinD/ParA family of P-loop NTPases, and in
particular show homology to the CpaE family of pilus
assembly proteins (see PMID:12370432). Nearly all
members are found, not only in a gene context consistent
with pilus biogenesis or a pilus-like secretion
apparatus, but also near a DEAD/DEAH-box helicase,
suggesting an involvement in DNA transfer activity. The
model describes a clade restricted to the
Actinobacteria.
Length = 322
Score = 28.5 bits (64), Expect = 4.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
+GG+GG G +T ++ L++ A L++ DP
Sbjct: 99 IGGRGGAGASTLAAALALAAARHGLRTLLVDADP 132
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of
several bacterial zeta toxin proteins. Zeta toxin is
thought to be part of a postregulational killing system
in bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 28.0 bits (63), Expect = 4.3
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 20 RNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP-SVLIISTD 65
+ Q+ V +GG+ G GKT + LL E+ +V+ I D
Sbjct: 4 SDKPPQERPVAVLLGGQPGAGKT---ELARALLEELGGGNVVRIDPD 47
>gnl|CDD|239388 cd03114, ArgK-like, The function of this protein family is
unkown. The protein sequences are similar to the ArgK
protein in E. coli. ArgK protein is a membrane ATPase
which is required for transporting arginine, ornithine
and lysine into the cells by the arginine and ornithine
(AO system) and lysine, arginine and ornithine (LAO)
transport systems.
Length = 148
Score = 27.7 bits (62), Expect = 5.0
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
+ G G GK+T L L V +++ DP
Sbjct: 4 ITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37
>gnl|CDD|182774 PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/
dihydrofolate synthase; Provisional.
Length = 416
Score = 28.1 bits (63), Expect = 5.5
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 30 WVF-VGGKGGVGKTTCSSILSILLA 53
+VF V G G G TTC ++ SIL+A
Sbjct: 50 FVFTVAGTNGKG-TTCRTLESILMA 73
>gnl|CDD|227298 COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE
[Intracellular trafficking and secretion].
Length = 366
Score = 27.8 bits (62), Expect = 6.2
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 14/59 (23%)
Query: 32 FVGGKGGVGKTT----CSSILSILL-AEVRPSVL---------IISTDPAHNLSDAFQQ 76
F+G KGGVG +T + L+IL A V L + DPA +++A +Q
Sbjct: 109 FLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQ 167
>gnl|CDD|237870 PRK14964, PRK14964, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 491
Score = 27.8 bits (62), Expect = 6.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 35 GKGGVGKTTCSSILSILL 52
G GVGKTTC+ I+S+ L
Sbjct: 42 GASGVGKTTCARIISLCL 59
>gnl|CDD|237315 PRK13247, PRK13247, dihydrobiliverdin:ferredoxin oxidoreductase;
Provisional.
Length = 238
Score = 27.7 bits (62), Expect = 6.5
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 29/120 (24%)
Query: 121 IPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFG 180
+ GID + F + KLV +D+ P L+Q L++ + + SLK +F
Sbjct: 80 LMGID-LLWFGKKQKLVAVLDFQ-------P------LVQDKDYLDRYFEGLKSLKERFP 125
Query: 181 GMINQMT-RLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLY 239
+ ++ T R + + F L + G + + K F FL Y
Sbjct: 126 DLNSEETMRFYDPNQYFSPWLLFCK-GGAETATNSLPKAFSA-------------FLKAY 171
>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine
aminocarboxypropyltransferase; Validated.
Length = 427
Score = 27.8 bits (62), Expect = 6.8
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 152 TGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLF 190
+GH + L F + L+ G D+ ++ + +GG INQ F
Sbjct: 86 SGHAAQFLVFHTLLQPG-DEFIAARKLYGGSINQFGHAF 123
>gnl|CDD|237478 PRK13709, PRK13709, conjugal transfer nickase/helicase TraI;
Provisional.
Length = 1747
Score = 28.2 bits (63), Expect = 6.9
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 17 GSVRNILEQDSLKWVFVGGKGGVGKTT----CSSILSILLAEVRPSVLIISTDPAH 68
+ R ILE ++ V G GVGKTT S ++ L RP ++ P H
Sbjct: 974 AATRMILESTD-RFTVVQGYAGVGKTTQFRAVMSAVNTLPESERP--RVVGLGPTH 1026
>gnl|CDD|201897 pfam01638, HxlR, HxlR-like helix-turn-helix. HxlR, a member of
this family, is a DNA-binding protein that acts as a
positive regulator of the formaldehyde-inducible hxlAB
operon in Bacillus subtilis.
Length = 91
Score = 26.1 bits (58), Expect = 7.6
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 114 FSELANAIPGIDEAMSFAEMLK-LVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKM 172
FSEL A+PGI + M + L+ L Q + +V+ P L + +LE LD +
Sbjct: 21 FSELKRALPGISQKM-LTQRLRELEQDGIINRVVYPEVPPKVEYSLTELGRSLEPILDAL 79
Query: 173 M 173
Sbjct: 80 C 80
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the
ATP-binding cassette component of cobalt transport
system. Domain II of the ABC component of a cobalt
transport family found in bacteria, archaea, and
eukaryota. The transition metal cobalt is an essential
component of many enzymes and must be transported into
cells in appropriate amounts when needed. The CbiMNQO
family ABC transport system is involved in cobalt
transport in association with the cobalamin (vitamin
B12) biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are
encoded by the conserved gene cluster cbiMNQO. Both the
CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems.
Length = 205
Score = 27.2 bits (61), Expect = 7.8
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 20 RNILEQDSLK-----WVFVGGKGGVGKTTCSSILSILLAEVRPSVLI 61
IL+ SL + + GK G GKTT + IL+ L+ E S+L+
Sbjct: 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
>gnl|CDD|234215 TIGR03453, partition_RepA, plasmid partitioning protein RepA.
Members of this family are the RepA (or ParA) protein
involved in replicon partitioning. All known examples
occur in bacterial species with two or more replicons,
on a plasmid or the smaller chromosome. Note that an
apparent exception may be seen as a pseudomolecule from
assembly of an incompletely sequenced genome. Members of
this family belong to a larger family that also includes
the enzyme cobyrinic acid a,c-diamide synthase, but
assignment of that name to members of this family would
be in error [Mobile and extrachromosomal element
functions, Plasmid functions].
Length = 387
Score = 27.6 bits (62), Expect = 7.9
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
KGG GKTT ++ L+ LA VL I DP +LS
Sbjct: 113 KGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQASLS 148
>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and
related GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 27.3 bits (61), Expect = 8.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
G G GK+T L L E V +++ DP
Sbjct: 58 GVPGAGKSTLIEALGRELRERGHRVAVLAVDP 89
>gnl|CDD|235449 PRK05415, PRK05415, hypothetical protein; Provisional.
Length = 341
Score = 27.5 bits (62), Expect = 8.9
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 182 MINQMTRLFGIDDEFGEDALLGRLEGMKDVI 212
+I ++ L+GI E G L R+ + V+
Sbjct: 237 LIRRIAELYGI--ELG---YLSRIRLFRLVL 262
>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase.
Length = 261
Score = 27.1 bits (60), Expect = 9.2
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 27 SLKWVFVGGKGGVGKTTCSSILSILL 52
++ WVF+G G VGK T +S LS LL
Sbjct: 29 NVNWVFLGCPG-VGKGTYASRLSKLL 53
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 26.5 bits (58), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
+ + G G GK+T L+ LAE + + +IS D
Sbjct: 2 ILITGPPGSGKST----LAKKLAE-KLGIPVISLD 31
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.394
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,154,409
Number of extensions: 1361765
Number of successful extensions: 1624
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1608
Number of HSP's successfully gapped: 109
Length of query: 276
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 180
Effective length of database: 6,679,618
Effective search space: 1202331240
Effective search space used: 1202331240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)