RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023886
(276 letters)
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 325 bits (834), Expect = e-112
Identities = 147/272 (54%), Positives = 193/272 (70%), Gaps = 10/272 (3%)
Query: 12 LEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
+ G++ N+LEQ SLKW+FVGGKGGVGKTT S L+I +++VR SVL+ISTDPAHNLS
Sbjct: 3 FDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLS 62
Query: 72 DAFQQRFTKTPTLVNGFSNLYAMEVDPSVE--------EETGSTEGMDSLFSELANAIPG 123
DAF +F K V GF NL AME+DP++ ++ + + +LA IPG
Sbjct: 63 DAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFTIPG 122
Query: 124 IDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMI 183
IDEA++FAE+LK +++M++ C++FDTAPTGHTLR L FP+ LEK L K+ L ++FG MI
Sbjct: 123 IDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMI 182
Query: 184 NQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETER 243
NQM + G++ E L G++E M+ I VNKQFK+PDLTTFVCVCI EFLSLYETER
Sbjct: 183 NQMGSIMGVNAN--EQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETER 240
Query: 244 LVQELTKFEIDTHNIIINQVLYDDEGMHCNCR 275
++QELT +EIDTHNI++NQ+L D C
Sbjct: 241 MIQELTSYEIDTHNIVVNQLLLDPNTTCPQCM 272
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 294 bits (755), Expect = e-100
Identities = 143/268 (53%), Positives = 185/268 (69%), Gaps = 10/268 (3%)
Query: 15 PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF 74
E ++++IL+Q SL+W+FVGGKGGVGKTT S L+I LA+VR SVL++STDPAHNLSDAF
Sbjct: 3 MEPTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAF 62
Query: 75 QQRFTKTPTLVNGFSNLYAMEVDP---------SVEEETGSTEGMDSLFSELANAIPGID 125
Q+F K LV GF NLYAME+DP + + G + +LA AIPGID
Sbjct: 63 SQKFGKEARLVEGFDNLYAMEIDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGID 122
Query: 126 EAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQ 185
EAMSFAE+LK V ++ Y IVFDTAPTGHTLR LQFP+ LEK L K+ L ++G ++N
Sbjct: 123 EAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKALAKVSQLSGQYGSLLNG 182
Query: 186 MTRLFG-IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERL 244
+ G + + ++ +L+ ++ I VN QFKD LTTFVCVCIPEFLSLYETER+
Sbjct: 183 ILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERM 242
Query: 245 VQELTKFEIDTHNIIINQVLYDDEGMHC 272
+QEL + IDTH I++NQ+L+ G C
Sbjct: 243 IQELANYGIDTHCIVVNQLLFPKPGSDC 270
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
{Debaryomyces hansenii}
Length = 348
Score = 290 bits (744), Expect = 4e-98
Identities = 123/279 (44%), Positives = 171/279 (61%), Gaps = 31/279 (11%)
Query: 15 PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP--SVLIISTDPAHNLSD 72
E ++ +I++ DSLKW+FVGGKGGVGKTT SS +++ LA +P L+ISTDPAHNLSD
Sbjct: 5 LEPTLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSD 64
Query: 73 AFQQRFTKTPTLVNGFSNLYAMEVDPSVEEE----------TGSTEGMDSLFSELANAIP 122
AF Q+F K V G NL ME+DP + + S+ S++ +IP
Sbjct: 65 AFCQKFGKDARKVEGLPNLSCMEIDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIP 124
Query: 123 GIDEAMSFAEMLKLVQ------------TMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLD 170
GIDEA+SF E+LK ++ + Y I+FDTAPTGHTLR LQ PSTLEK L
Sbjct: 125 GIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLS 184
Query: 171 KMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCV 230
K L K G M++ M + + +L ++ + VN+QF +P+LTTF+CV
Sbjct: 185 KFKDLSGKLGPMLSMMGGGQ-------QQDIFEKLNEVQKNVSEVNEQFTNPELTTFICV 237
Query: 231 CIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEG 269
CI EFLSLYETER++QEL + +D ++I++NQ+L+ +
Sbjct: 238 CISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGD 276
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 288 bits (739), Expect = 2e-97
Identities = 101/277 (36%), Positives = 148/277 (53%), Gaps = 16/277 (5%)
Query: 9 DQELEIPEGSVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPA 67
+ G LE+ D K++ GGKGGVGKTT S+ + LAE V+I+STDPA
Sbjct: 6 KDSINSLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65
Query: 68 HNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSLFS 115
H+L D F+Q F PT V G+ NLY +E+DP EE M
Sbjct: 66 HSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQL 125
Query: 116 ELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSL 175
E+A PG DE+ +F LK + + ++ ++FDTAPTGHTLR L P ++K + K++ L
Sbjct: 126 EMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKL 185
Query: 176 KNKFGGMINQMTRLFGI---DDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCI 232
+ + G + M +L D++ D +L LE MK+ I R DP+ T F V I
Sbjct: 186 RKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVI 245
Query: 233 PEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEG 269
PE +S+ E+ER ++ L K+ I +I+NQ++ +D
Sbjct: 246 PEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQ 282
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 288 bits (739), Expect = 3e-97
Identities = 121/289 (41%), Positives = 172/289 (59%), Gaps = 35/289 (12%)
Query: 15 PEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRP--SVLIISTDPAHNLSD 72
E ++ +++ + KW+FVGGKGGVGKTT S ++I +A +P L+ISTDPAHNLSD
Sbjct: 5 VEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSD 64
Query: 73 AFQQRFTKTPTLVNGFSNLYAMEVDPSVE--------------------EETGSTEGMDS 112
AF ++F K V G +NL ME+DPS + +
Sbjct: 65 AFGEKFGKDARKVTGMNNLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGG 124
Query: 113 LFSELANAIPGIDEAMSFAEMLKLVQTMD------YSCIVFDTAPTGHTLRLLQFPSTLE 166
++L +IPGIDEA+SF E++K ++ + + ++FDTAPTGHTLR LQ P+TL
Sbjct: 125 ALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLS 184
Query: 167 KGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTT 226
K L+K + NK G M+N G + G+L +K +E + +QF DPDLTT
Sbjct: 185 KLLEKFGEITNKLGPMLNSFMGA-------GNVDISGKLNELKANVETIRQQFTDPDLTT 237
Query: 227 FVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCR 275
FVCVCI EFLSLYETERL+QEL +++D ++II+NQ+L+ + NC+
Sbjct: 238 FVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCK 286
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 281 bits (720), Expect = 9e-95
Identities = 98/261 (37%), Positives = 146/261 (55%), Gaps = 16/261 (6%)
Query: 23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTP 82
+ +VF+GGKGGVGKTT S+ ++ +A L+ISTDPAH+LSD+ ++ TP
Sbjct: 9 FNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREIGHTP 68
Query: 83 TLVNGFSNLYAMEVDPSVEEE-------------TGSTEGMDSLFSELANAIPGIDEAMS 129
T + NLYA+E+DP V E G M ++A+ PGIDEA +
Sbjct: 69 TKITE--NLYAVEIDPEVAMEEYQAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAA 126
Query: 130 FAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRL 189
F + L+ + T +Y ++FDTAPTGHTLRLL FP ++ + KM+ ++ + G M +
Sbjct: 127 FDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMIKIRRQIGSMAKAFKNI 186
Query: 190 FG-IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
+ DE ED L +E K I + DP+ T+F V IPE +S+YE+ER ++ L
Sbjct: 187 LPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKAL 246
Query: 249 TKFEIDTHNIIINQVLYDDEG 269
K+ I +I+NQVL ++
Sbjct: 247 EKYSIHADGVIVNQVLPEESD 267
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 253 bits (647), Expect = 1e-80
Identities = 74/266 (27%), Positives = 106/266 (39%), Gaps = 38/266 (14%)
Query: 23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTP 82
Q+ ++F GKGGVGKT+ S +I LAE VL++STDPA N+ F Q T
Sbjct: 3 FLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTI 62
Query: 83 TLVNGFSNLYAMEVDPSVE------------EETGSTEGMDSLFSELANA----IPGIDE 126
+ L A+E+DP + + + S+ +L+ A I DE
Sbjct: 63 QAIASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDE 122
Query: 127 AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQM 186
L+ D+ I+FDTAPTGHT+RLLQ P +D + G M
Sbjct: 123 FTGLLTDASLLTRFDH--IIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPM---- 176
Query: 187 TRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQ 246
LE ++ + DP T V V + +L E R
Sbjct: 177 ----------------AGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHL 220
Query: 247 ELTKFEIDTHNIIINQVLYDDEGMHC 272
EL + ++IN VL E +
Sbjct: 221 ELAAIGLKNQYLVINGVLPKTEAAND 246
Score = 211 bits (539), Expect = 1e-64
Identities = 59/285 (20%), Positives = 101/285 (35%), Gaps = 53/285 (18%)
Query: 1 MTEEDQDQDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVL 60
+ ++ Q + ++ + + ++ + + GKGGVGKTT ++ +++ LA++ V
Sbjct: 300 PSSDEYLQQRPDIPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVH 359
Query: 61 IISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEE----------TGSTEGM 110
+ ++DPA +LS +NL +DP E E +
Sbjct: 360 LTTSDPAAHLSMTLNGSL----------NNLQVSRIDPHEETERYRQHVLETKGKELDEA 409
Query: 111 DSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLD 170
E P +E F ++++ +V DTAPTGHTL LL + +
Sbjct: 410 GKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIA 469
Query: 171 KMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCV 230
K M K F +DP+ T + V
Sbjct: 470 KKMGEKGHF---------------------------------TTPMMLLQDPERTKVLLV 496
Query: 231 CIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGMHCNCR 275
+PE + E L +L + I IIN L + R
Sbjct: 497 TLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLR 541
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 239 bits (611), Expect = 1e-77
Identities = 41/258 (15%), Positives = 83/258 (32%), Gaps = 24/258 (9%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS-TDPAHNLSDAFQQRFTKTPTLVNGFS 89
+ GK GV +T + + LLA VL+ +P +Q T P +
Sbjct: 5 LTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGLAEPVL--PLLLEQTLTPDPQQIAP-- 60
Query: 90 NLYAMEVDPSVE------------EETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLV 137
NL ++ SV + T + ++ + +PG+D A++ + +
Sbjct: 61 NLEVVQFQSSVLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYD 120
Query: 138 QTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG------ 191
+ Y IV+D TLR+L P +L + + L
Sbjct: 121 ASGKYDTIVYDGTGDAFTLRMLGLPESLSWYVRRFRQLFVNSDLGKTIAESPLIQPLISS 180
Query: 192 -IDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK 250
+ + D + + +++ + DP V + L + L +
Sbjct: 181 FFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVSVRYLWGSAQQ 240
Query: 251 FEIDTHNIIINQVLYDDE 268
+ +I + +
Sbjct: 241 IGLTIGGVIQVSSQTEGD 258
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.6 bits (177), Expect = 2e-14
Identities = 43/290 (14%), Positives = 82/290 (28%), Gaps = 79/290 (27%)
Query: 18 SVRNILEQ-DSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSD-AFQ 75
+R L + K V + G G GKT + +V Q
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTW-------VALDV--------------CLSYKVQ 177
Query: 76 QRF------------TKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPG 123
+ T++ L ++DP+ + + + + +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 124 IDEAMSFAEML---------KLVQTMDYSC---------IVFDTAPTGHT--LRLLQFPS 163
+ ++ + L K + SC V D T + L
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 164 TLEKGLDKMMSLKNKFGGMINQM-------TRLFGIDDEFGEDALLGRLEGMKDVIERVN 216
TL D++ SL K+ Q T + +++ ++D + +
Sbjct: 297 TLTP--DEVKSLLLKYLDCRPQDLPREVLTTNPRRL-------SIIAES--IRDGLATWD 345
Query: 217 --KQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVL 264
K LTT + + L E ++ L+ F H I +L
Sbjct: 346 NWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAH--IPTILL 392
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 53.8 bits (130), Expect = 9e-09
Identities = 31/226 (13%), Positives = 70/226 (30%), Gaps = 52/226 (23%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEV-RPSVLIISTD--------------PAHNLSDAFQ 75
FV KGG G + ++ + L++ VL + + +L+D
Sbjct: 8 GFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISN 67
Query: 76 QRFTKTPTLVNGF-----SNLYAMEVDPSVEEETG-STEGMDSLFSELANAIP------- 122
+L++ +L + + E+ E + L A+
Sbjct: 68 ASDRLDKSLLDTMVQHISPSLDLIPSPATFEKIVNIEPERVSDLIHIAASFYDYIIVDFG 127
Query: 123 -GIDE----AMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKN 177
ID + + L +V T + +LL+ EK + ++ + N
Sbjct: 128 ASIDHVGVWVLEHLDELCIVTTPSLQSLR-------RAGQLLKLCKEFEKPISRIEIILN 180
Query: 178 KF--GGMIN--QMTRLFGIDDEFGEDALLGRL-EGMKDVIERVNKQ 218
+ I ++ ++ G + R+ + + E +
Sbjct: 181 RADTNSRITSDEIEKVIGRP-------ISKRIPQDEDAMQESLLSG 219
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 51.7 bits (124), Expect = 5e-08
Identities = 39/240 (16%), Positives = 70/240 (29%), Gaps = 50/240 (20%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAM 94
GKGGVGKTT ++ L ++A + + DP L G S A
Sbjct: 7 GKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTL------------GLSIEEAY 54
Query: 95 EVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGH 154
+ P +E + I E +L L +D +
Sbjct: 55 AITPLIEMK------------------DEIREKTGDGGLLILNPKVDGD-LDKYGRYIDD 95
Query: 155 TLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFG----IDDEFGEDALLGRLEGMKD 210
+ L++ + G + G +++ + +D G + L D
Sbjct: 96 KIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLTRGTAKAVD 155
Query: 211 VIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTKFEIDTHNIIINQVLYDDEGM 270
++ + V P S+ + + I +IN+V E
Sbjct: 156 MM---------------IAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNIKEEK 200
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 52.2 bits (125), Expect = 5e-08
Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 6/125 (4%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSN 90
+F GGVG +T ++ +I A + V ++ + FQ T+ + +
Sbjct: 147 IFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNA--TMSDVIYS 204
Query: 91 LYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTM----DYSCIV 146
L + + + ++ E+ + + + + + +S+A++ L+ + +Y I+
Sbjct: 205 LKSRKANLLLKLESCIKQSQEGVSYFSSTKVALDILEISYADIDTLIGNIQGMDNYDEII 264
Query: 147 FDTAP 151
D
Sbjct: 265 VDLPF 269
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA
segregation, unknown function; HET: ADP; 1.80A
{Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Length = 206
Score = 50.5 bits (121), Expect = 9e-08
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLV 85
F+ KGG GKTT ++ L+ ++ ++ TDP +L++ +
Sbjct: 5 SFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFT 59
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 44.7 bits (106), Expect = 7e-06
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQR 77
KGGVGKTT + LS LA L+I DP + + ++
Sbjct: 4 TVASFKGGVGKTTTAVHLSAYLALQGE-TLLIDGDPNRSATGWGKRG 49
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 41.8 bits (99), Expect = 1e-04
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 15/100 (15%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTD--------------PAHNLSDAFQQRFTK 80
GKGG GKTT ++ L + LA++ V I+ D L +
Sbjct: 10 GKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARI 69
Query: 81 TPTLVNGFSNLYAMEVDPSVEEETG-STEGMDSLFSELAN 119
+ G + + S+E + E ++ + +++
Sbjct: 70 DEAIYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIME 109
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell
division inhibitor, MINC, MINE, cell hydrolase; HET:
ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Length = 260
Score = 40.7 bits (96), Expect = 2e-04
Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 30/141 (21%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTD---------------PAHNLSDAFQQRFT 79
GKGGVGKTT S+ ++ LA+ ++I ++ + Q T
Sbjct: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDAT 69
Query: 80 KTPTLVNG--FSNLYAMEVDPSVEEETGSTEGMDSLFSELANAI---------PGIDE-- 126
L+ NLY + + +++ + EG+ + +L GI+
Sbjct: 70 LNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGA 129
Query: 127 --AMSFAEMLKLVQTMDYSCI 145
A+ FA+ + + S +
Sbjct: 130 LMALYFADEAIITTNPEVSSV 150
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered,
protein-ADP complex, cell cycle, hydrolase; HET: ADP;
2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB:
1g3r_A* 1ion_A*
Length = 237
Score = 40.2 bits (95), Expect = 3e-04
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTD-PAHNLS 71
GKGG GKTT ++ LS+ L + VL + D NLS
Sbjct: 10 GKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLS 47
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 40.7 bits (96), Expect = 3e-04
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
KGGVGK+ S++ + L ++ VL+I D L+
Sbjct: 45 KGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLT 80
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH,
niaid, borellia burgdorferi, plasmid partition protein,
iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Length = 267
Score = 39.9 bits (94), Expect = 4e-04
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
KGGVGK+T + IL+ LL++ VL+I D
Sbjct: 36 KGGVGKSTSAIILATLLSKNN-KVLLIDMDT 65
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A
{Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Length = 286
Score = 39.4 bits (92), Expect = 6e-04
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
KGG GK+T + L L V +I D
Sbjct: 13 KGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome
segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A*
2bek_A*
Length = 257
Score = 39.1 bits (92), Expect = 7e-04
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 36 KGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLS 71
KGGVGKTT + L+ LA + VL++ DP N +
Sbjct: 15 KGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNAT 50
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 3.30A {Corynebacterium
diphtheriae}
Length = 361
Score = 38.7 bits (90), Expect = 0.002
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 36 KGGVGKTTCSSI-LSILLAEVRPSVLIISTDPAHNLS 71
KGGVGKTT S ++ A VL + DP N +
Sbjct: 10 KGGVGKTT-LSTNVAHYFALQGKRVLYVDCDPQCNAT 45
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur,
metal-binding, molybdenum, oxidoreductase; HET: HCA CFN
CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii}
SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E*
1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A
1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A*
1rw4_A
Length = 289
Score = 37.7 bits (88), Expect = 0.002
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
GKGG+GK+T + L LAE+ V+I+ DP
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA 42
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.003
Identities = 46/252 (18%), Positives = 76/252 (30%), Gaps = 91/252 (36%)
Query: 9 DQELEIPEG-SVRNILEQD--SLKWVFVGGKGG----------VGKTTC--SSILSILLA 53
D + G S+ +I+ + +L F GG+ G + +T +
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHF-GGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 54 EVRPSVL-IISTDPAHNLSD-AFQQRFTKTP--TLVNGFSNLYAM-EVDPSVEEETGSTE 108
E+ LS F Q P TL+ A E ++ + G
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQ-----PALTLME-----KAAFED---LKSK-GLIP 1754
Query: 109 GMD-----SL--FSELANAIPGIDEAMSFAEMLKLV----QTMDYSCIVFDTAPTGHTLR 157
SL ++ LA ++ MS ++++V TM P
Sbjct: 1755 ADATFAGHSLGEYAALA-SLAD---VMSIESLVEVVFYRGMTMQ------VAVPRD---- 1800
Query: 158 LLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGMKDVIERVNK 217
E G GMI I+ G A E ++ V+ERV K
Sbjct: 1801 --------ELGRSN--------YGMI-------AINP--GRVAASFSQEALQYVVERVGK 1835
Query: 218 QFKDPDLTTFVC 229
+ T ++
Sbjct: 1836 R------TGWLV 1841
Score = 33.5 bits (76), Expect = 0.079
Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 28/128 (21%)
Query: 153 GHTLRLLQFPSTLEKG-LDKMMS-----------LKNKFGGMINQMTRLFGIDDEFGEDA 200
++ R P TL G L+ ++ L+ +F ++ + T F DDE A
Sbjct: 3 AYSTR----PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 201 -LLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLS--LYETE------RLVQELTKF 251
L+G+ G V V K + +C+ EF + L + +L+QE
Sbjct: 59 ELVGKFLGY--VSSLVEPS-KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 252 EIDTHNII 259
+ T +I
Sbjct: 116 LVKTKELI 123
Score = 32.7 bits (74), Expect = 0.15
Identities = 44/274 (16%), Positives = 82/274 (29%), Gaps = 94/274 (34%)
Query: 40 GKTTCSSILSILLAEVRPSVLIIST----DPAHNLSD-----AF------QQRFTKTPTL 84
G T S ++ A + I+ + F + + P
Sbjct: 269 GATGHSQ--GLVTA------VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY---PN- 316
Query: 85 VNGFSNLYAMEVDPSVEEETG------STEGM--DSLFSELA--NA-IPGIDEAMSFAEM 133
++L ++ S+E G S + + + + N+ +P + + +
Sbjct: 317 ----TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA-GKQVEIS-- 369
Query: 134 LKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEK-----GLD----KMMSLKNKFGGMIN 184
LV + +V +G L TL K GLD K KF
Sbjct: 370 --LVNGAK-NLVV-----SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS---- 417
Query: 185 QMTRLFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEF--------- 235
R + F L+ + + + + N F D+ IP +
Sbjct: 418 --NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ------IPVYDTFDGSDLR 469
Query: 236 -LSLYETERLVQELTKFEID---------THNII 259
LS +ER+V + + + TH I+
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFKATH-IL 502
Score = 29.6 bits (66), Expect = 1.4
Identities = 31/188 (16%), Positives = 53/188 (28%), Gaps = 73/188 (38%)
Query: 105 GSTE---GMDSLF--SELANAIPGIDEA-------MSFAEMLKLVQ-------------- 138
GS E GMD L+ S+ A + + A F+ +L +V
Sbjct: 1625 GSQEQGMGMD-LYKTSKAAQDV--WNRADNHFKDTYGFS-ILDIVINNPVNLTIHFGGEK 1680
Query: 139 ----TMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG---MINQMTRLFG 191
+YS ++F+T G F E F +++ T
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT------FRSEKGLLSA-T---- 1729
Query: 192 IDDEFGEDALL----GRLEGMKDVIERVNKQFKDPDLTTFVC----------VCIPEFLS 237
+F + AL E +K K D + + +S
Sbjct: 1730 ---QFTQPALTLMEKAAFEDLKS------KGLIPAD--ATFAGHSLGEYAALASLADVMS 1778
Query: 238 LYETERLV 245
+ +V
Sbjct: 1779 IESLVEVV 1786
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 37.0 bits (86), Expect = 0.003
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
V + G G GK+T S+ L+ L+ ++ D
Sbjct: 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59
>3end_A Light-independent protochlorophyllide reductase iron-sulfur
ATP-binding protein; BCHL, electron donor, DPOR, Fe
protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter
sphaeroides 2} PDB: 3fwy_A*
Length = 307
Score = 37.1 bits (86), Expect = 0.004
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
GKGG+GK+T SS LS + + VL I DP H
Sbjct: 48 GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium
pasteurianum} SCOP: c.37.1.10
Length = 269
Score = 36.5 bits (85), Expect = 0.006
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 35 GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
GKGG+GK+T + L+ L + +++++ DP
Sbjct: 8 GKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA 41
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
3ez6_A* 3ez7_A
Length = 398
Score = 36.3 bits (84), Expect = 0.008
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 36 KGGVGKTTCSSI-LSILLAEVRPS------VLIISTDPAHNLSDAF 74
KGGV KT S++ L+ + +L+I DP + +
Sbjct: 117 KGGVSKTV-STVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFL 161
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 35.9 bits (83), Expect = 0.011
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 36 KGGVGKTTCSSI-LSILLAEVRPS------VLIISTDPAHNLS 71
KGGV KT S++ L+ L + +L+I DP + +
Sbjct: 120 KGGVSKTV-STVTLAHALRVHQDLLRHDLRILVIDLDPQASST 161
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Length = 262
Score = 34.9 bits (81), Expect = 0.019
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 1 MTEEDQDQDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLA 53
M + D++ + + +++ + S GKGGVGK+T +++L++ A
Sbjct: 1 MQKRVTDEEIKERLG--KIKSRIAVMS-------GKGGVGKSTVTALLAVHYA 44
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 33.0 bits (76), Expect = 0.067
Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 31/129 (24%)
Query: 38 GVGKTTCSSILSILLAEVRPSVLIISTD---PAHNLSDAFQQRFTKTPTLVNGFSNLYAM 94
G GK+T ++ L++ A+ LI+ D P F + G S+L
Sbjct: 93 GAGKSTIAANLAVAYAQAGYKTLIVDGDMRKP--TQHYIFNLPNNE------GLSSLLLN 144
Query: 95 EVDPSVEEETGSTEGMDSLF--------SELANAIPGIDEAMS--FAEMLKLVQTMDYSC 144
+ E +D L SEL S FA + + +Y+
Sbjct: 145 WSTYQDSIISTEIEDLDVLTSGPIPPNPSEL---------ITSRAFANLYDTLLM-NYNF 194
Query: 145 IVFDTAPTG 153
++ DT P
Sbjct: 195 VIIDTPPVN 203
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 33.1 bits (76), Expect = 0.074
Identities = 26/129 (20%), Positives = 41/129 (31%), Gaps = 31/129 (24%)
Query: 38 GVGKTTCSSILSILLAEVRPSVLIISTD---PAHNLSDAFQQRFTKTPTLVNGFSNLYAM 94
GKT SS L+ ++A+ VL I D + F G S A
Sbjct: 115 DSGKTFVSSTLAAVIAQSDQKVLFIDADLRRG--YSHNLFTVSNEH------GLSEYLAG 166
Query: 95 EVDPSVEEETGSTEGMDSLF--------SELANAIPGIDEAMS--FAEMLKLVQTMDYSC 144
+ + + + G D + SEL M ++L+ Y
Sbjct: 167 KDELNKVIQHFGKGGFDVITRGQVPPNPSEL---------LMRDRMRQLLEWAND-HYDL 216
Query: 145 IVFDTAPTG 153
++ DT P
Sbjct: 217 VIVDTPPML 225
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 33.0 bits (76), Expect = 0.079
Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 31/129 (24%)
Query: 38 GVGKTTCSSILSILLAEVRPSVLIISTD---PAHNLSDAFQQRFTKTPTLVNGFSNLYAM 94
+G T + L+ ++++ VL+I D + NG S +
Sbjct: 103 SIGMTFVCANLAAVISQTNKRVLLIDCDMRKG--YTHELLGTNNV------NGLSEILIG 154
Query: 95 EVDPSVEEETGSTEGMDSLF--------SELANAIPGIDEAMS--FAEMLKLVQTMDYSC 144
+ D + + S D + SEL MS FAE++ +Y
Sbjct: 155 QGDITTAAKPTSIAKFDLIPRGQVPPNPSEL---------LMSERFAELVNWASK-NYDL 204
Query: 145 IVFDTAPTG 153
++ DT P
Sbjct: 205 VLIDTPPIL 213
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 32.7 bits (74), Expect = 0.096
Identities = 26/208 (12%), Positives = 63/208 (30%), Gaps = 27/208 (12%)
Query: 31 VFVGGKGGVGKTT-CSSILSILLAEVRPSVLIISTDPA-----HNLSDAFQQRFTKTPTL 84
V G G GKTT L E V ++ D + S ++ T +
Sbjct: 17 VVFVGTAGSGKTTLTGEFGRYL--EDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIM 74
Query: 85 VNGFSN----LYAME-----VDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLK 135
G+ + + + + + + + D + + ++ + ++
Sbjct: 75 REGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTP---GQMETFLFHEFGVR 131
Query: 136 LVQTMDYSCIVF--DTA----PTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRL 189
L++ + Y +V+ D P + + + NK ++++ +
Sbjct: 132 LMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKV-DLLSEEEKE 190
Query: 190 FGIDDEFGEDALLGRLEGMKDVIERVNK 217
D L RL+ + +
Sbjct: 191 RHRKYFEDIDYLTARLKLDPSMQGLMAY 218
>3sd7_A Putative phosphatase; structural genomics, haloacid
dehalogenase-like hydrolase, H center for structural
genomics of infectious diseases; HET: PGE; 1.70A
{Clostridium difficile}
Length = 240
Score = 30.7 bits (70), Expect = 0.46
Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 20/76 (26%)
Query: 139 TMDYSCIVFD-------TAP-----TGHTLRLLQFPSTLEKGLDKMMSLKNKFG-GMINQ 185
+Y ++FD ++L LE L G + +
Sbjct: 26 KKNYEIVLFDLDGTLTDPKEGITKSIQYSLNSFGIKEDLEN-------LDQFIGPPLHDT 78
Query: 186 MTRLFGIDDEFGEDAL 201
+ +D+ ++A+
Sbjct: 79 FKEYYKFEDKKAKEAV 94
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 30.6 bits (68), Expect = 0.46
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF 78
R + +GG+ G GKTT I I E + +++II D + + +
Sbjct: 23 TRGKKSSKQPIAILLGGQSGAGKTT---IHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQ 79
Query: 79 TKTPTLVNGFSNLYAMEVDPSVEEE 103
+ ++ +A ++ S+ +
Sbjct: 80 QEYGKDSVEYTKDFAGKMVESLVTK 104
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 30.0 bits (66), Expect = 0.75
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 19 VRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRF 78
++ +S +GG+ G GKT+ + S + E + +V++I D F +
Sbjct: 24 IQGKKAVESPTAFLLGGQPGSGKTS---LRSAIFEETQGNVIVIDNDTFKQQHPNFDELV 80
Query: 79 TKTP 82
Sbjct: 81 KLYE 84
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 29.6 bits (67), Expect = 0.81
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
+ G GKTT ++ LS L E SV + D
Sbjct: 27 IDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 29.3 bits (65), Expect = 1.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63
K V V G GVG TT S + L + + ++S
Sbjct: 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 29.6 bits (66), Expect = 1.1
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA 73
V G G G +T + + I D H + A
Sbjct: 10 VTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRA 50
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 28.9 bits (64), Expect = 1.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 28 LKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIIS 63
+K V G GVGK+T + + +L + II+
Sbjct: 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 29.8 bits (67), Expect = 1.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 51 LLAEVRPSVLIISTDPAHNLSDAFQQRFTKTP--TL-VNGFSNLYAM 94
++AE RP ++I++ D +D FQ F P TL V FS +
Sbjct: 273 IVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGA 319
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: LLP; 2.15A {Lactobacillus acidophilus
ncfm}
Length = 533
Score = 29.4 bits (66), Expect = 1.6
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 52 LAEV---RPSVLIISTDPAHNLSDAFQQRFTKTP--TL-VNGFSNLYAM 94
+ + P ++IIS + F+ ++ P T+ V +S L+
Sbjct: 269 IKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGC 317
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 29.1 bits (65), Expect = 1.7
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 15/111 (13%)
Query: 14 IPEGSVRNILEQDSLKWVFVGGKGGVGKTT-CSSILSILLAEVRPSVLIISTD--PAHNL 70
+P G V G G GKT L + E + ++ + P +
Sbjct: 36 LPIGRS-----------TLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDII 84
Query: 71 SDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAI 121
+A + + G + DP +E G + + +L + AI
Sbjct: 85 KNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFD-LSALIERINYAI 134
>1yyv_A Putative transcriptional regulator; reductive methylation, D
lysine, structural genomics, PSI; HET: MLY; 2.35A
{Salmonella typhimurium} SCOP: a.4.5.69
Length = 131
Score = 27.6 bits (61), Expect = 2.1
Identities = 10/59 (16%), Positives = 20/59 (33%)
Query: 114 FSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKM 172
FS+L + G+ E M + L Q + + + P L + + +
Sbjct: 51 FSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVAAL 109
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 28.4 bits (63), Expect = 2.7
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 23 LEQDSLKWVFVGGKGGVGKTT 43
+ ++F+ G+ G GK+
Sbjct: 147 MCDLDSFFLFLHGRAGSGKSV 167
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 27.9 bits (62), Expect = 3.5
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 33 VGGKGGVGKTT-CSSILSILLAEVR----PSVLIISTD 65
V G GK++ C+ I+ +L V+I+S D
Sbjct: 27 VSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD 64
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 27.5 bits (61), Expect = 3.8
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 29 KWVFVG--GKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
K +G G GKTT + L L P+ +IS D
Sbjct: 20 KTFIIGISGVTNSGKTTLAKNLQKHL----PNCSVISQD 54
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 27.9 bits (62), Expect = 4.3
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 24 EQDSLKWVFVGGKGGVGKTT 43
+ WV + G G GK+
Sbjct: 143 LKGEPGWVTIHGMAGCGKSV 162
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND
ligase, magnesium, nucleotide-binding; 1.85A
{Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A*
3fpa_A*
Length = 251
Score = 27.4 bits (61), Expect = 4.7
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 15 PEGSVRNILEQDSLKWVFVGGKG-GVGKTTCSSIL 48
N+ Q + + V G G GVGKT + L
Sbjct: 13 GLQGTENLYFQSHMTILVVTGTGTGVGKTVVCAAL 47
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 27.5 bits (61), Expect = 4.8
Identities = 28/205 (13%), Positives = 64/205 (31%), Gaps = 35/205 (17%)
Query: 14 IPEGSVRNILEQDSLKWVFVGGKGGVGKTT-CSSILSILLAEVRPSVLIISTD--PAHNL 70
PEG+ V + G G GKTT + + E + ++ +
Sbjct: 27 FPEGTT-----------VLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLR 75
Query: 71 SDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSF 130
+ + G + VD +E L +
Sbjct: 76 REMASFGWDFEKYEKEGKIAI----VDGVSSVVGLPSEEKFVLEDRF-------NVDNFL 124
Query: 131 AEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGG---MINQMT 187
+ ++V+ ++ +V D+ P+ L+ + + L K+ ++ + G + +
Sbjct: 125 RYIYRVVKAINAKRLVIDSIPS--IALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182
Query: 188 RLFGIDDEFGEDALLGRLEGMKDVI 212
D + G+ + G E + +
Sbjct: 183 -----DPQHGKLSRYGIEEFIARGV 202
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown
function, PSI-2, protein structure initiative; HET: MSE
ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Length = 257
Score = 27.2 bits (61), Expect = 4.9
Identities = 7/54 (12%), Positives = 14/54 (25%), Gaps = 1/54 (1%)
Query: 119 NAIPGIDEAMSFAEMLKLVQTMDYSCIVF-DTAPTGHTLRLLQFPSTLEKGLDK 171
+ P I + ++ I + D A + +PS
Sbjct: 139 ASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQD 192
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3
domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo
sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A
1wlp_B
Length = 193
Score = 26.9 bits (59), Expect = 5.8
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 8 QDQELEIPEGSVRNILEQDSLKWVFVGGKGGVG 40
E+ + G V ++E+ W F K G
Sbjct: 24 SGSEMALSTGDVVEVVEKSESGWWFCQMKAKRG 56
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 26.9 bits (58), Expect = 7.6
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAE---VRPSVLIISTDPAH 68
+F G G GK+ S + L E S+ S D +
Sbjct: 34 IFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74
>3of5_A Dethiobiotin synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, ligase;
1.52A {Francisella tularensis subsp}
Length = 228
Score = 26.6 bits (59), Expect = 8.1
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 26 DSLKWVFVGGKG-GVGKTTCSSIL 48
+++K F+ G VGKT S+ L
Sbjct: 2 NAMKKFFIIGTDTEVGKTYISTKL 25
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 26.8 bits (58), Expect = 8.5
Identities = 4/37 (10%), Positives = 10/37 (27%)
Query: 8 QDQELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTC 44
Q ++ + + L K ++ K
Sbjct: 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQL 61
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 26.5 bits (58), Expect = 9.9
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 11/151 (7%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQ------RFTKTPTL 84
+ K G GK+ + +L + V+II DP + ++ T
Sbjct: 38 WTILAKPGAGKSFTAKMLLLREYMQGSRVIII--DPEREYKEMCRKLGGVWINCTGGEGK 95
Query: 85 VNGFS---NLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMD 141
+N E + + ++ + +L + + + + + A LV+
Sbjct: 96 INPLQVRLRPVEEEDEENAVFQSPLALHIQTLRTFFSLYLRDLTDTEKAALEDALVEVYK 155
Query: 142 YSCIVFDTAPTGHTLRLLQFPSTLEKGLDKM 172
+ I +DT P G L + K
Sbjct: 156 EAGITWDTDPRGVPNDKWPTVKELYEYCVKK 186
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.394
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,238,612
Number of extensions: 255383
Number of successful extensions: 910
Number of sequences better than 10.0: 1
Number of HSP's gapped: 876
Number of HSP's successfully gapped: 80
Length of query: 276
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 184
Effective length of database: 4,133,061
Effective search space: 760483224
Effective search space used: 760483224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)