RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023886
(276 letters)
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 137 bits (346), Expect = 1e-39
Identities = 71/262 (27%), Positives = 103/262 (39%), Gaps = 34/262 (12%)
Query: 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTL 84
Q+ ++F GKGGVGKT+ S +I LAE VL++STDPA N+ F Q T
Sbjct: 5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQA 64
Query: 85 VNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANA-IPGIDEAMSFAEM---------- 133
+ L A+E+DP + +D + L + + I+E +S A
Sbjct: 65 IASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFT 124
Query: 134 ---LKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLF 190
+ I+FDTAPTGHT+RLLQ P +D + G M
Sbjct: 125 GLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGL----- 179
Query: 191 GIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQELTK 250
E ++ + DP T V V + +L E R EL
Sbjct: 180 ---------------EKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAA 224
Query: 251 FEIDTHNIIINQVLYDDEGMHC 272
+ ++IN VL E +
Sbjct: 225 IGLKNQYLVINGVLPKTEAAND 246
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 119 bits (299), Expect = 6e-33
Identities = 56/267 (20%), Positives = 95/267 (35%), Gaps = 34/267 (12%)
Query: 10 QELEIPE-GSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAH 68
Q +IP ++ + + ++ + + GKGGVGKTT ++ +++ LA++ V + ++DPA
Sbjct: 1 QRPDIPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA 60
Query: 69 NLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAM 128
+LS +E + + E P +E
Sbjct: 61 HLSMTLNGSLNNLQVSRIDPHEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIA 120
Query: 129 SFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTR 188
F ++++ +V DTAPTGHTL LL + + K M
Sbjct: 121 VFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKM--------------- 165
Query: 189 LFGIDDEFGEDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFLSLYETERLVQEL 248
G K +DP+ T + V +PE + E L +L
Sbjct: 166 ------------------GEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADL 207
Query: 249 TKFEIDTHNIIINQVLYDDEGMHCNCR 275
+ I IIN L + R
Sbjct: 208 ERAGIHPWGWIINNSLSIADTRSPLLR 234
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 51.5 bits (122), Expect = 3e-08
Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 3/129 (2%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLY 92
+ GKGG+GK+T + L+ L + +++++ DP + + + L
Sbjct: 6 IYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGE 65
Query: 93 AMEVDPSVEEETGSTEGMDSLFSE--LANAIPGIDEAMSFAEMLKLVQTMDYSCIVFDTA 150
+E+D ++E G ++S E + A GI +++ E L + +D
Sbjct: 66 DVELDSILKEGYGGIRCVESGGPEPGVGCAGRGIITSINMLEQLGAYTDD-LDYVFYDVL 124
Query: 151 PTGHTLRLL 159
Sbjct: 125 GDVVCGGFA 133
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 51.0 bits (121), Expect = 4e-08
Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 5/129 (3%)
Query: 27 SLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVN 86
+++ + GKGG+GK+T + L LAE+ V+I+ DP + + + +
Sbjct: 1 AMRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEM 60
Query: 87 GFSNLYAMEVDPSVEEETG----STEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDY 142
+++ + G + A G+ A++F E + D
Sbjct: 61 AAEAGTVEDLELEDVLKAGYGGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYED-DL 119
Query: 143 SCIVFDTAP 151
+ +D
Sbjct: 120 DFVFYDVLG 128
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 45.1 bits (105), Expect = 2e-06
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
GKGG GKTT ++ L + LA++ V I+ D
Sbjct: 5 TVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 40
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 44.7 bits (104), Expect = 4e-06
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDP 66
V GKGG GKTT ++ LS+ L + VL + D
Sbjct: 6 SIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 36.5 bits (83), Expect = 0.002
Identities = 27/195 (13%), Positives = 50/195 (25%), Gaps = 22/195 (11%)
Query: 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGF 88
+ VF+ G GVGKTT S +L V T+ +R ++G
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQ----GGRRIGFDVVTLSGT 57
Query: 89 SNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFD 148
+ + G + + A+ V D
Sbjct: 58 RGPLSRVGLEPPPGKRECRVGQYVV-----DLTSFEQLALPVLRNADCSSGPGQRVCVID 112
Query: 149 TAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMTRLFGIDDEFGEDALLGRLEGM 208
+E + + + + AL+ +
Sbjct: 113 EI------------GKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNR 160
Query: 209 KDV-IERVNKQFKDP 222
KDV + V K+ ++
Sbjct: 161 KDVKVFNVTKENRNH 175
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 32.4 bits (72), Expect = 0.040
Identities = 18/85 (21%), Positives = 23/85 (27%), Gaps = 2/85 (2%)
Query: 29 KWVFVGGKG-GVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNG 87
K FV G VGKT S L + + R + L
Sbjct: 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRN 61
Query: 88 FS-NLYAMEVDPSVEEETGSTEGMD 111
S L V+P E S +
Sbjct: 62 SSLQLDYATVNPYTFAEPTSPHIIS 86
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 31.8 bits (72), Expect = 0.075
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDA 73
+ V G G G +T + + I D H + A
Sbjct: 7 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRA 49
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide
synthetase MurE {Escherichia coli [TaxId: 562]}
Length = 234
Score = 30.5 bits (67), Expect = 0.17
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 2/120 (1%)
Query: 25 QDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTL 84
D+L+ V V G GKTT + +L+ + ++ T L T +
Sbjct: 2 SDNLRLVGVTGT--NGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAV 59
Query: 85 VNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSC 144
++ + S+ G+ + +S + Y
Sbjct: 60 DVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEA 119
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 29.9 bits (66), Expect = 0.28
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAE-----VRPSVLIISTDPAHN 69
+ V G GK++ + + LL + + V+I+S D +
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 48
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 29.7 bits (66), Expect = 0.33
Identities = 43/216 (19%), Positives = 72/216 (33%), Gaps = 28/216 (12%)
Query: 11 ELEIPEGSVRNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70
E +P RN+ W VG G GKTT ++ L++ L+++ D
Sbjct: 1 EARLPVLKDRNL-------WFLVG-LQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 52
Query: 71 S-DAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMS 129
+ + + K V + + E EE E D + + A + + M
Sbjct: 53 AREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 112
Query: 130 FAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQ-FPSTLEKGLDKMMSLKNK---FGGMINQ 185
LK V D +V D L + + F + G+ ++ K GG
Sbjct: 113 ELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV--GVTGLVLTKLDGDARGGAALS 170
Query: 186 MTRLFG-----------IDD--EFGEDALLGRLEGM 208
+ G + F + L GR+ GM
Sbjct: 171 ARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGM 206
>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 28.7 bits (64), Expect = 0.48
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 128 MSFAEMLKLVQTMDYSCIVFDTAPTGHTLRLLQFPSTLEK 167
S A+ + L+ ++ C P G L+ + ++
Sbjct: 140 WSMAQAITLLADVERLCPQLVKTPPGGLLQSVDLHPAIKA 179
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 477
Score = 28.9 bits (64), Expect = 0.71
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 198 EDALLGRLEGMKDVIERVNKQFKDPDLTTFVCVCIPE 234
+D + G + + +I+ V F + C
Sbjct: 118 KDIVFGGDKKLAKLIDEVETLFPLNKGISVQSECPIG 154
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 28.2 bits (62), Expect = 0.80
Identities = 29/196 (14%), Positives = 59/196 (30%), Gaps = 19/196 (9%)
Query: 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFS 89
+ VG +G GK T + L+ + V ++ D + Q+ + +
Sbjct: 15 IMLVGVQG-TGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGE 73
Query: 90 NLYAMEVDPSVE-EETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFD 148
V + E +E M+ + + A +EA EM + + + +
Sbjct: 74 PGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLV 133
Query: 149 TAPTGHTLRLLQF-PSTLEKGLDKMMSLK----NKFGGMINQMTRL-----F-----GID 193
+ + ++ K K GG ++ + F ID
Sbjct: 134 IDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKID 193
Query: 194 D--EFGEDALLGRLEG 207
+ F + RL
Sbjct: 194 ELEVFNPRRFVARLHH 209
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 28.2 bits (61), Expect = 0.94
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 19 VRNILEQDSLKWVFVG--GKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
+ IL + + +G G GKTT ++ LS L E SV + D
Sbjct: 11 CKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 28.0 bits (61), Expect = 1.1
Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 1/123 (0%)
Query: 29 KWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGF 88
K V V G GVG TT S + L + + ++S A ++ +
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMF-EVAKEENLVSDRDQMRKM 60
Query: 89 SNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDYSCIVFD 148
+ + + + + + + L + IV +
Sbjct: 61 DPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVE 120
Query: 149 TAP 151
T
Sbjct: 121 TTG 123
>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 443
Score = 28.2 bits (63), Expect = 1.3
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 204 RLEGMKDVIERVNKQFKDPDLTTFVCVCIPEFL 236
+ ++ I+ + + + L C P L
Sbjct: 14 VSQEVERQIDHIKQLLTNAKLAWMFENCFPNTL 46
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 27.9 bits (61), Expect = 1.3
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAF 74
V G G GK+T +LL V +I+ DP+ ++
Sbjct: 59 VTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGS 100
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide
D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli
[TaxId: 562]}
Length = 214
Score = 27.4 bits (59), Expect = 1.6
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 37 GGVGKTTCSSILSILLAEVRPSVLIIST 64
G GKT+ + + +L++ ++
Sbjct: 9 GSSGKTSVKEMTAAILSQCGNTLYTAGN 36
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase
MurC {Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 27.4 bits (59), Expect = 1.7
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 20 RNILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEV--RPSVLI 61
R+ L+++ + V G GKTT +++++ +L + P+V +
Sbjct: 6 RDTLKREKKEEFAVTGT--DGKTTTTAMVAHVLKHLRKSPTVFL 47
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 27.4 bits (60), Expect = 1.7
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTL 84
+ VG G VGKTT + L + V+ + D + K ++
Sbjct: 9 VLVVGVNG-VGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSI 62
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.5 bits (60), Expect = 1.9
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 31 VFVGGKGGVGKTT-CSSILSILLAE--VRPSVLIISTD 65
+F G G GK+ I + L+ + S+ S D
Sbjct: 30 IFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASID 67
>d2pofa1 d.13.1.4 (A:31-250) CDP-diacylglycerol pyrophosphatase CDH
{Escherichia coli [TaxId: 562]}
Length = 220
Score = 27.1 bits (60), Expect = 2.0
Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 12/82 (14%)
Query: 48 LSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGST 107
I ++ +RP V + N R+ P + G A V T S
Sbjct: 109 FHIHISCIRPDVR----EQLDNNLANISSRWLPLPGGLRG-HEYLARRV-------TESE 156
Query: 108 EGMDSLFSELANAIPGIDEAMS 129
S F LA +P E M
Sbjct: 157 LVQRSPFMMLAEEVPEAREHMG 178
>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 273
Score = 27.1 bits (60), Expect = 2.1
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 28 LKWVFVGGK--GGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70
+K++ V G G+GK +S + +L V I DP N+
Sbjct: 1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINI 45
>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 272
Score = 27.1 bits (60), Expect = 2.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 29 KWVFVGGK--GGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70
K+VF+ G +GK +S L LL V I DP N+
Sbjct: 3 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNV 46
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 26.5 bits (57), Expect = 2.8
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFT 79
+ + G+ GVGKTT ++ ++ + + T+ + + F
Sbjct: 3 IIITGEPGVGKTT---LVKKIVERLGKRAIGFWTEEVRDPETKKRTGFR 48
>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 266
Score = 26.7 bits (59), Expect = 2.8
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 29 KWVFVGGK--GGVGKTTCSSILSILLAEVRPSVLIISTDPAHNL 70
++FV G +GK ++ L+ +L +V I+ DP N+
Sbjct: 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINV 47
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 26.5 bits (57), Expect = 3.5
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 31 VFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
+ + G GKT S L+ L + +
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 39
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 26.4 bits (57), Expect = 3.7
Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 8/138 (5%)
Query: 33 VGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLY 92
+ G GVGK+T L LL V +++ DP+ S T + +
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS---STRTGGSILGDKTRMARLAIDR 112
Query: 93 AMEVDPSVEEETGSTEGMDSLFSELANAIPGID----EAMSFAEMLKLVQTMDYSCIVFD 148
+ PS T + + L G D E + + V + +V
Sbjct: 113 NAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLM 172
Query: 149 TAPTGHTLRLLQFPSTLE 166
G L+ + E
Sbjct: 173 LPGAGDELQGI-KKGIFE 189
>d1sctb_ a.1.1.2 (B:) Hemoglobin I {Ark clam (Scapharca
inaequivalvis) [TaxId: 6561]}
Length = 150
Score = 25.4 bits (55), Expect = 5.0
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 3/89 (3%)
Query: 55 VRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEVDPSVEEETGSTEGMDSLF 114
+R S ++S D F +P+ F+ L + + G +L
Sbjct: 19 LRMSWGVLSVDMEGTGLMLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGH---SITLM 75
Query: 115 SELANAIPGIDEAMSFAEMLKLVQTMDYS 143
L N + +D+ +++ +
Sbjct: 76 YALQNFVDALDDVERLKCVVEKFAVNHIN 104
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 23.9 bits (52), Expect = 5.3
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 108 EGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDY 142
++ EL + + G D M + +L+ + +DY
Sbjct: 2 SSINDKIIELKDLVMGTDAKMHKSGVLR--KAIDY 34
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 25.9 bits (55), Expect = 5.4
Identities = 35/246 (14%), Positives = 70/246 (28%), Gaps = 20/246 (8%)
Query: 23 LEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTP 82
L+ V G GK+ SI+ I + E+ + + + + F
Sbjct: 24 LKGLRAPITLVLGLRRTGKS---SIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLEL 80
Query: 83 TLVNGFSNLYAMEVDPSVEEETGSTEGMDSLFSELANAIPGIDEAMSFAEMLKLVQTMDY 142
+ +++ G + + + + + D
Sbjct: 81 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRL---SFANLLESFEQASKDN 137
Query: 143 SCIVFDTAPTGHTLRLLQFPSTLEKGLDKMMSLKNKFGGMINQMT-----RLFGIDDEFG 197
IV D A LR + L D + +K G + FG
Sbjct: 138 VIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFG 197
Query: 198 EDALLGRLEGM--KDVIERVNKQFKDPDLTTFVCV-------CIPEFLSLYETERLVQEL 248
L+ ++ IE + + F++ D+ IP +L+ + L +
Sbjct: 198 RAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPGWLTYFGFIYLDNKN 257
Query: 249 TKFEID 254
F I+
Sbjct: 258 LDFAIN 263
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 25.7 bits (55), Expect = 5.4
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTD 65
+ G G VGK+T + + +L + II+
Sbjct: 4 GIVTGIPG-VGKSTVLAKVKEILDNQGINNKIINYG 38
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 25.5 bits (55), Expect = 6.8
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 21 NILEQDSLKWVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
N+ + + VG G GKTT L+ + + SV++ + D
Sbjct: 5 NVPPEPPFVIMVVGVNG-TGKTTSCGKLAKMFVDEGKSVVLAAADTFRA 52
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 25.3 bits (54), Expect = 6.9
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 26 DSLKWVFVGGKGGVGKTTCSSILS 49
+S++ V +G G GK T + L
Sbjct: 1 ESIRMVLIGPPG-AGKGTQAPNLQ 23
>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase
MurC {Haemophilus influenzae [TaxId: 727]}
Length = 215
Score = 25.2 bits (54), Expect = 7.8
Identities = 9/64 (14%), Positives = 25/64 (39%)
Query: 37 GGVGKTTCSSILSILLAEVRPSVLIISTDPAHNLSDAFQQRFTKTPTLVNGFSNLYAMEV 96
G GKTT ++++S++ + + ++ + ++ S+ + +
Sbjct: 19 GTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADESDASFLHL 78
Query: 97 DPSV 100
P V
Sbjct: 79 QPMV 82
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 24.9 bits (53), Expect = 8.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 108 EGMDSLFSELANAIPGI 124
+ LF +A A+PG+
Sbjct: 148 YNVKQLFRRVAAALPGM 164
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 25.0 bits (54), Expect = 8.9
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 30 WVFVGGKGGVGKTTCSSILSILLAEVRPSVLIISTDPAHN 69
+ VG G VGKTT L+ + SV++ + D
Sbjct: 12 ILMVGVNG-VGKTTTIGKLARQFEQQGKSVMLAAGDTFRA 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.394
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,016,829
Number of extensions: 46361
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 50
Length of query: 276
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,254,276
Effective search space: 240820992
Effective search space used: 240820992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)