BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023887
(276 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255547744|ref|XP_002514929.1| GTP binding protein, putative [Ricinus communis]
gi|223545980|gb|EEF47483.1| GTP binding protein, putative [Ricinus communis]
Length = 500
Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust.
Identities = 221/269 (82%), Positives = 241/269 (89%), Gaps = 6/269 (2%)
Query: 1 MRVIVQQSEPSRTS------DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVD 54
MRVI+Q PS + + + + GVELLCVVRA+LKKI+RRVLVGDKVVVGSIDWVD
Sbjct: 106 MRVIIQSLPPSSGTFLKSPEEEDSRIGVELLCVVRAVLKKIRRRVLVGDKVVVGSIDWVD 165
Query: 55 RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLAL 114
RRGMIENVFQRSTEILDPPVANVDHLL+LFSMDQPK+EPFALTRFLVEAESTGIPLTLAL
Sbjct: 166 RRGMIENVFQRSTEILDPPVANVDHLLVLFSMDQPKIEPFALTRFLVEAESTGIPLTLAL 225
Query: 115 NKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174
NK ELVDEE L WKSRL +WGYEPLFCSVESKLGLDSL LR+QTTVIVGPSGVGKSS
Sbjct: 226 NKSELVDEETLIAWKSRLRSWGYEPLFCSVESKLGLDSLAYILREQTTVIVGPSGVGKSS 285
Query: 175 LINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234
LINALR+ P A D A+ DNWF+P+LGSKWFE+QRVGEVST+SGRGKHTTR+VSLLPLS G
Sbjct: 286 LINALRNKPRACDVAENDNWFDPMLGSKWFEEQRVGEVSTRSGRGKHTTRNVSLLPLSAG 345
Query: 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
GYLADTPGFNQPSLLKVTKQSLA+TFPE+
Sbjct: 346 GYLADTPGFNQPSLLKVTKQSLAETFPEI 374
>gi|449452897|ref|XP_004144195.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Cucumis
sativus]
gi|449489232|ref|XP_004158254.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Cucumis
sativus]
Length = 504
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/243 (85%), Positives = 228/243 (93%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GVELLCVV+A+LKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRS+EILDPPVANVDHL
Sbjct: 138 GVELLCVVKAVLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSSEILDPPVANVDHL 197
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
L+LFSMDQP+LEPF LTRFLVEAESTGIPLTL LNK+ELVDEE L +WKSRL +WGY+PL
Sbjct: 198 LVLFSMDQPRLEPFTLTRFLVEAESTGIPLTLGLNKLELVDEETLVSWKSRLRSWGYDPL 257
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
FCSV++ GLDSL LRDQTTVIVGPSGVGKSSLINALR+S A+DA+D DNWF+PILG
Sbjct: 258 FCSVQTGAGLDSLAFILRDQTTVIVGPSGVGKSSLINALRNSNRATDASDTDNWFDPILG 317
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
SKWFE+QRV EVST+SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL+K+TKQSLAQ F
Sbjct: 318 SKWFEEQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLMKITKQSLAQAF 377
Query: 261 PEV 263
PE+
Sbjct: 378 PEI 380
>gi|357463041|ref|XP_003601802.1| hypothetical protein MTR_3g085550 [Medicago truncatula]
gi|355490850|gb|AES72053.1| hypothetical protein MTR_3g085550 [Medicago truncatula]
Length = 471
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 210/264 (79%), Positives = 237/264 (89%), Gaps = 2/264 (0%)
Query: 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIVQ S+PS T D + + G ELLCVVRALLKKIKRRV+VGDKV+VGS+DWVDRR MI
Sbjct: 86 MRVIVQ-SQPSGTFQDASSRGGAELLCVVRALLKKIKRRVMVGDKVLVGSVDWVDRRAMI 144
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVFQR++E+LDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAESTGIPLTLALNK EL
Sbjct: 145 ENVFQRNSEMLDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTGIPLTLALNKTEL 204
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
VD+E +++WK+R WGY+P+FCSVES +D L +LRDQTTV+VGPSGVGKSSLINAL
Sbjct: 205 VDKETMDSWKARFRGWGYQPIFCSVESGHNIDLLAFQLRDQTTVVVGPSGVGKSSLINAL 264
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
RS+P D AD +NWFEPILGSKW++DQRV EVST+SGRGKHTTRHVSLLPLSGGGYLAD
Sbjct: 265 RSNPRTCDTADGENWFEPILGSKWYDDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLAD 324
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEV 263
TPGFNQPSLLKVTKQSLAQTFPE+
Sbjct: 325 TPGFNQPSLLKVTKQSLAQTFPEI 348
>gi|224137508|ref|XP_002322575.1| predicted protein [Populus trichocarpa]
gi|222867205|gb|EEF04336.1| predicted protein [Populus trichocarpa]
Length = 385
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/268 (78%), Positives = 240/268 (89%), Gaps = 5/268 (1%)
Query: 1 MRVIVQQSEPSRTSDCND--KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGM 58
MRVIV PSR+ + D K G ELLCVVRA+LKKIKRRVLVGDKVVVGSIDWVDRRGM
Sbjct: 1 MRVIVTAG-PSRSREIEDSSKNGSELLCVVRAVLKKIKRRVLVGDKVVVGSIDWVDRRGM 59
Query: 59 IENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
IENVFQRS+EILDPPVANVDHLL+LFS++QP+L+ F LTRFL+EAESTGIP+TLALNKVE
Sbjct: 60 IENVFQRSSEILDPPVANVDHLLVLFSLEQPRLDSFVLTRFLIEAESTGIPITLALNKVE 119
Query: 119 LVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
LVD+EVL+ W SRL +WGYEPLFCSV+SK+GLD+L LRDQTTVI+GPSGVGKSSLINA
Sbjct: 120 LVDQEVLSDWNSRLRSWGYEPLFCSVDSKMGLDTLASVLRDQTTVILGPSGVGKSSLINA 179
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
LR+ P++ D A DNWF+PI+GSKWFEDQRVGEVST++GRGKHTTR+VSLLPL GGGY+A
Sbjct: 180 LRNKPNSHDEA--DNWFDPIMGSKWFEDQRVGEVSTRNGRGKHTTRNVSLLPLGGGGYVA 237
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
DTPGF+QPSLLKVTKQSLAQ FPE+ V
Sbjct: 238 DTPGFSQPSLLKVTKQSLAQYFPEIRTV 265
>gi|356540154|ref|XP_003538555.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Glycine
max]
Length = 475
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/264 (80%), Positives = 234/264 (88%), Gaps = 8/264 (3%)
Query: 1 MRVIV-QQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIV + EPS GVE+LCVVRALLKKIKRRV+VGDKV+VGSIDWVDRRGMI
Sbjct: 97 MRVIVPENDEPS-----GSFRGVEILCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMI 151
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVFQR++EILDPPVANVD LL+LFS++ PK EPF LTRFLVEAESTGIPL LALNK EL
Sbjct: 152 ENVFQRTSEILDPPVANVDQLLVLFSLEHPKPEPFTLTRFLVEAESTGIPLMLALNKTEL 211
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
VD E++++WK+RL +WGYEP+FCSVES GLD L +LRDQTTVIVGPSGVGKSSLINAL
Sbjct: 212 VDNEIISSWKARLRSWGYEPVFCSVESGHGLDLLGYKLRDQTTVIVGPSGVGKSSLINAL 271
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
RS+P SDAA+ DNWFEPILGSKW EDQRVGEVST+SGRGKHTTRHVSLLPLS GG+LAD
Sbjct: 272 RSNP--SDAAEGDNWFEPILGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLAD 329
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEV 263
TPGFNQPSLLKVTKQSLAQTFPE+
Sbjct: 330 TPGFNQPSLLKVTKQSLAQTFPEI 353
>gi|356566415|ref|XP_003551427.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Glycine
max]
Length = 473
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/264 (79%), Positives = 235/264 (89%), Gaps = 8/264 (3%)
Query: 1 MRVIV-QQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIV + EPS GVE+LCVVRALLKKIKRRV+VGDKV+VGSIDWVDRRGMI
Sbjct: 93 MRVIVPENDEPS-----GSFRGVEILCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMI 147
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVF R++EILDPPVANVD LL+LFS++QPK EPF LTRFLVEAESTGIPLTLALNK EL
Sbjct: 148 ENVFHRTSEILDPPVANVDQLLVLFSLEQPKPEPFTLTRFLVEAESTGIPLTLALNKTEL 207
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
VD E++++WK+RL +WGYEP+FCSVES GLD L +LRDQTTVIVGPSGVGKSSLINAL
Sbjct: 208 VDNEIISSWKARLRSWGYEPVFCSVESGHGLDLLGFKLRDQTTVIVGPSGVGKSSLINAL 267
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
RS+P S+AA+ +NWFEP+LGSKW EDQRVGEVST+SGRGKHTTRHVSLLPLS GG+LAD
Sbjct: 268 RSNP--SNAAEGENWFEPVLGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLAD 325
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEV 263
TPGFNQPSLLKVTKQSLAQTFPE+
Sbjct: 326 TPGFNQPSLLKVTKQSLAQTFPEI 349
>gi|42563017|ref|NP_176911.2| Minichromosome maintenance (MCM2/3/5) protein [Arabidopsis
thaliana]
gi|66792692|gb|AAY56448.1| At1g67440 [Arabidopsis thaliana]
gi|332196525|gb|AEE34646.1| Minichromosome maintenance (MCM2/3/5) protein [Arabidopsis
thaliana]
Length = 433
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/266 (76%), Positives = 227/266 (85%), Gaps = 4/266 (1%)
Query: 1 MRVIVQQSEPSRTSDCND---KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG 57
MRVIVQ S TSD ++ KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRG
Sbjct: 44 MRVIVQDVANSVTSDDDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRG 103
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
MIENVF R +EILDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAEST IPLTLALNK
Sbjct: 104 MIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKT 163
Query: 118 ELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EL+ EE L TWK RL W YEPLFCSV +K GLD + LRDQT+VIVGPSGVGKSSLIN
Sbjct: 164 ELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLIN 223
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
LRS+ H + +NWFEP+LG+KWF+DQRVGEVS++SGRGKHTTR+VSLLP+S GGYL
Sbjct: 224 VLRSN-HGGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYL 282
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEV 263
ADTPGFNQPSLLKVTK SLA FPE+
Sbjct: 283 ADTPGFNQPSLLKVTKHSLAHCFPEI 308
>gi|225425472|ref|XP_002279434.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like isoform 3
[Vitis vinifera]
Length = 491
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/246 (79%), Positives = 221/246 (89%), Gaps = 1/246 (0%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ GVELLCVVRA+LKKIKRRVLVGDKV+VGSIDWVDRRG+IENVF R +EILDPPVANVD
Sbjct: 118 RVGVELLCVVRAVLKKIKRRVLVGDKVLVGSIDWVDRRGVIENVFSRKSEILDPPVANVD 177
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
HLL+LF+M+QPKLE ++LTRFLVEAESTGIP+TLALNK ELVDEE WKSRL +WGY
Sbjct: 178 HLLVLFAMEQPKLEVYSLTRFLVEAESTGIPITLALNKSELVDEETRVAWKSRLRSWGYG 237
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS-PHASDAADVDNWFEP 197
P+FCSVESK GLD+L LR+QTTVIVGPSGVGKSSLINALRS+ P + +++ +NWF+
Sbjct: 238 PVFCSVESKFGLDTLAFSLREQTTVIVGPSGVGKSSLINALRSNHPLINVSSEENNWFDS 297
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
ILGSK E+QRVGEVS +SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT QSLA
Sbjct: 298 ILGSKLLEEQRVGEVSVRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTTQSLA 357
Query: 258 QTFPEV 263
QTFPE+
Sbjct: 358 QTFPEI 363
>gi|297738426|emb|CBI27627.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/246 (79%), Positives = 221/246 (89%), Gaps = 1/246 (0%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ GVELLCVVRA+LKKIKRRVLVGDKV+VGSIDWVDRRG+IENVF R +EILDPPVANVD
Sbjct: 27 RVGVELLCVVRAVLKKIKRRVLVGDKVLVGSIDWVDRRGVIENVFSRKSEILDPPVANVD 86
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
HLL+LF+M+QPKLE ++LTRFLVEAESTGIP+TLALNK ELVDEE WKSRL +WGY
Sbjct: 87 HLLVLFAMEQPKLEVYSLTRFLVEAESTGIPITLALNKSELVDEETRVAWKSRLRSWGYG 146
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS-PHASDAADVDNWFEP 197
P+FCSVESK GLD+L LR+QTTVIVGPSGVGKSSLINALRS+ P + +++ +NWF+
Sbjct: 147 PVFCSVESKFGLDTLAFSLREQTTVIVGPSGVGKSSLINALRSNHPLINVSSEENNWFDS 206
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
ILGSK E+QRVGEVS +SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT QSLA
Sbjct: 207 ILGSKLLEEQRVGEVSVRSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTTQSLA 266
Query: 258 QTFPEV 263
QTFPE+
Sbjct: 267 QTFPEI 272
>gi|3176667|gb|AAC18791.1| Similar to hypothetical 41.9KD protein gb|1001369 from sequence of
Synechocystis sp. gb|D64006 [Arabidopsis thaliana]
Length = 450
Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/283 (72%), Positives = 227/283 (80%), Gaps = 21/283 (7%)
Query: 1 MRVIVQQSEPSRTSDCND---KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG 57
MRVIVQ S TSD ++ KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRG
Sbjct: 44 MRVIVQDVANSVTSDDDNDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRG 103
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
MIENVF R +EILDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAEST IPLTLALNK
Sbjct: 104 MIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKT 163
Query: 118 ELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EL+ EE L TWK RL W YEPLFCSV +K GLD + LRDQT+VIVGPSGVGKSSLIN
Sbjct: 164 ELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLIN 223
Query: 178 ALRSSPHASDAADVDNWFEPI-----------------LGSKWFEDQRVGEVSTKSGRGK 220
LRS+ H + +NWFEP+ LG+KWF+DQRVGEVS++SGRGK
Sbjct: 224 VLRSN-HGGGVVEDENWFEPLKFCLPDSYELSFCDIQMLGNKWFDDQRVGEVSSRSGRGK 282
Query: 221 HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
HTTR+VSLLP+S GGYLADTPGFNQPSLLKVTK SLA FPE+
Sbjct: 283 HTTRNVSLLPVSEGGYLADTPGFNQPSLLKVTKHSLAHCFPEI 325
>gi|297841431|ref|XP_002888597.1| EMB1688 [Arabidopsis lyrata subsp. lyrata]
gi|297334438|gb|EFH64856.1| EMB1688 [Arabidopsis lyrata subsp. lyrata]
Length = 430
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/265 (76%), Positives = 228/265 (86%), Gaps = 3/265 (1%)
Query: 1 MRVIVQQSEPSRTSDCND--KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGM 58
MRVIVQ S S +D KTGVELLCVVRA+LKKI+RRVLVGDKV+VGSIDWVDRRGM
Sbjct: 44 MRVIVQDVASSVKSGDDDSSKTGVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRGM 103
Query: 59 IENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
IENVF R +EILDPPVANVDHLL+LFS+DQPKLE F LTRFLVEAEST IPLTLALNK E
Sbjct: 104 IENVFHRRSEILDPPVANVDHLLVLFSLDQPKLELFTLTRFLVEAESTRIPLTLALNKTE 163
Query: 119 LVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
L+ EE L +WK RL W YEPLFCSV +K GLD++ LR+QT+VIVGPSGVGKSSLIN
Sbjct: 164 LISEEELESWKIRLRGWNYEPLFCSVGTKDGLDAIAFVLRNQTSVIVGPSGVGKSSLINI 223
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
LRS+ H S A + +NWFEP+LG+KWF+DQRVGEVST+SGRGKHTTR+VSLLP+S GGYLA
Sbjct: 224 LRSN-HGSGAVEDENWFEPMLGNKWFDDQRVGEVSTRSGRGKHTTRNVSLLPISEGGYLA 282
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEV 263
DTPGFNQPSLLKVTKQSLA FPE+
Sbjct: 283 DTPGFNQPSLLKVTKQSLAHCFPEI 307
>gi|224086679|ref|XP_002307929.1| predicted protein [Populus trichocarpa]
gi|222853905|gb|EEE91452.1| predicted protein [Populus trichocarpa]
Length = 394
Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 193/265 (72%), Positives = 220/265 (83%), Gaps = 24/265 (9%)
Query: 1 MRVIVQQSEPSRTSDCND--KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGM 58
MRVIV +EP + D + K G ELLCVVRA+LKKIKRRVLVGDKVVVGSIDWVDRRGM
Sbjct: 62 MRVIVT-AEPEKIEDSSSSSKVGTELLCVVRAVLKKIKRRVLVGDKVVVGSIDWVDRRGM 120
Query: 59 IENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
IENVFQRS++ILDPPVANVD LL+LFS++QP+LE F LTRFL+EAESTGIP+TLALNK E
Sbjct: 121 IENVFQRSSDILDPPVANVDRLLVLFSVEQPQLESFVLTRFLIEAESTGIPITLALNKAE 180
Query: 119 LVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
LVD++VL+ W +RL +WGYEPLFCSV+SK+GLDSL LRDQTTVIVGPSGVGKSSLINA
Sbjct: 181 LVDQQVLSDWDTRLRSWGYEPLFCSVDSKMGLDSLASVLRDQTTVIVGPSGVGKSSLINA 240
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
LR+ P++ QRVG+VST+SGRGKHTTR+VSLLPL GGGYLA
Sbjct: 241 LRNKPNS---------------------QRVGKVSTRSGRGKHTTRNVSLLPLGGGGYLA 279
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEV 263
DTPGF+QPSLLKVTKQSLAQ FPE+
Sbjct: 280 DTPGFSQPSLLKVTKQSLAQYFPEI 304
>gi|357163023|ref|XP_003579600.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like isoform 2
[Brachypodium distachyon]
Length = 445
Score = 345 bits (886), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 169/266 (63%), Positives = 208/266 (78%), Gaps = 7/266 (2%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRG+IE
Sbjct: 62 MRVIVGSTPPG----LEHHQGTDLLCVVRALLKKIRRRVLVGDRVLVGAVDWADRRGVIE 117
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VFQR +E++DPPVANVD L++LFS+DQP+ EP LTRFLVEAESTGIP L NKVELV
Sbjct: 118 DVFQRRSEVVDPPVANVDRLVVLFSLDQPQPEPATLTRFLVEAESTGIPFVLVFNKVELV 177
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
DE+ + W+ RL +WGY+PLF SV+ + GL +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 178 DEQTKSYWRDRLKSWGYDPLFLSVDQRSGLAALEEMLEAQTTVVVGPSGVGKSSLINALR 237
Query: 181 SS---PHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
+ P + +W+ P+ SKWF +QRVG VS KSG+GKHTTRHVSLLP+ GG+L
Sbjct: 238 CNQNIPEEDPIHQLVDWYGPLGNSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIVDGGFL 297
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEV 263
ADTPGFNQPSL+KVTK+ LA+TFPE+
Sbjct: 298 ADTPGFNQPSLMKVTKKGLAETFPEI 323
>gi|242075464|ref|XP_002447668.1| hypothetical protein SORBIDRAFT_06g012040 [Sorghum bicolor]
gi|241938851|gb|EES11996.1| hypothetical protein SORBIDRAFT_06g012040 [Sorghum bicolor]
Length = 453
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 170/263 (64%), Positives = 206/263 (78%), Gaps = 6/263 (2%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P + G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRGMIE
Sbjct: 75 MRVIVDAAAPG----LDHHRGSDLLCVVRALLKKIRRRVLVGDRVLVGAVDWTDRRGMIE 130
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VF+R +E+ DPPVANVD L++LFS+DQPK EP LTRFLVEAESTGIP L NKVELV
Sbjct: 131 DVFERRSEVADPPVANVDRLVVLFSLDQPKPEPATLTRFLVEAESTGIPFVLVFNKVELV 190
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
E+ + W+ RL +WGY+PLF SV+ K G +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 191 GEQTIAYWRDRLKSWGYDPLFLSVDKKSGFTALEEMLEGQTTVVVGPSGVGKSSLINALR 250
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+ S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP++GGG+LADT
Sbjct: 251 GNQDISEEDPIHKLVE--QNSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIAGGGFLADT 308
Query: 241 PGFNQPSLLKVTKQSLAQTFPEV 263
PGFNQPSL+KVTK+SLA+TFPE+
Sbjct: 309 PGFNQPSLMKVTKKSLAETFPEI 331
>gi|326514214|dbj|BAJ92257.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 476
Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 167/263 (63%), Positives = 208/263 (79%), Gaps = 6/263 (2%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRGMIE
Sbjct: 98 MRVIVSSTAPG----LEQHQGTDLLCVVRALLKKIRRRVLVGDRVLVGAVDWTDRRGMIE 153
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VF+R +E+ DPPVANVD L++LFS+DQP+ EP LTRFLVEAESTGIP LA NKVELV
Sbjct: 154 DVFERRSEMADPPVANVDRLVVLFSLDQPEPEPATLTRFLVEAESTGIPFVLAFNKVELV 213
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D+++++ W+ R+ +WGY+PLF SV+ + GL +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 214 DDQIISYWRDRMKSWGYDPLFLSVDQRSGLSALEEILEGQTTVVVGPSGVGKSSLINALR 273
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+ + S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP+ GG+LADT
Sbjct: 274 CNQNISEEDPIHQLLEQ--NSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIVDGGFLADT 331
Query: 241 PGFNQPSLLKVTKQSLAQTFPEV 263
PGFNQPSL+KVTK+ LA+TFPE+
Sbjct: 332 PGFNQPSLMKVTKRGLAETFPEI 354
>gi|326509569|dbj|BAJ87000.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 449
Score = 344 bits (882), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 167/263 (63%), Positives = 208/263 (79%), Gaps = 6/263 (2%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRGMIE
Sbjct: 71 MRVIVSSTAPG----LEQHQGTDLLCVVRALLKKIRRRVLVGDRVLVGAVDWTDRRGMIE 126
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VF+R +E+ DPPVANVD L++LFS+DQP+ EP LTRFLVEAESTGIP LA NKVELV
Sbjct: 127 DVFERRSEMADPPVANVDRLVVLFSLDQPEPEPATLTRFLVEAESTGIPFVLAFNKVELV 186
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D+++++ W+ R+ +WGY+PLF SV+ + GL +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 187 DDQIISYWRDRMKSWGYDPLFLSVDQRSGLSALEEILEGQTTVVVGPSGVGKSSLINALR 246
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+ + S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP+ GG+LADT
Sbjct: 247 CNQNISEEDPIHQLLEQ--NSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIVDGGFLADT 304
Query: 241 PGFNQPSLLKVTKQSLAQTFPEV 263
PGFNQPSL+KVTK+ LA+TFPE+
Sbjct: 305 PGFNQPSLMKVTKRGLAETFPEI 327
>gi|326494450|dbj|BAJ90494.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326495076|dbj|BAJ85634.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 449
Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 167/263 (63%), Positives = 208/263 (79%), Gaps = 6/263 (2%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRGMIE
Sbjct: 71 MRVIVSSTAPG----LEQHQGTDLLCVVRALLKKIRRRVLVGDRVLVGAVDWTDRRGMIE 126
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VF+R +E+ DPPVANVD L++LFS+DQP+ EP LTRFLVEAESTGIP LA NKVELV
Sbjct: 127 DVFERRSEMADPPVANVDRLVVLFSLDQPEPEPATLTRFLVEAESTGIPFVLAFNKVELV 186
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D+++++ W+ R+ +WGY+PLF SV+ + GL +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 187 DDQIISYWRDRMKSWGYDPLFLSVDQRSGLSALEEILEGQTTVVVGPSGVGKSSLINALR 246
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+ + S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP+ GG+LADT
Sbjct: 247 CNQNISEEDPIHQLLEQ--NSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIVDGGFLADT 304
Query: 241 PGFNQPSLLKVTKQSLAQTFPEV 263
PGFNQPSL+KVTK+ LA+TFPE+
Sbjct: 305 PGFNQPSLMKVTKRGLAETFPEI 327
>gi|194707848|gb|ACF88008.1| unknown [Zea mays]
gi|413918101|gb|AFW58033.1| EMB1688 [Zea mays]
Length = 453
Score = 342 bits (877), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 168/263 (63%), Positives = 207/263 (78%), Gaps = 6/263 (2%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P + G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRGMIE
Sbjct: 76 MRVIVDATAPG----LDHHRGSDLLCVVRALLKKIRRRVLVGDRVLVGAVDWTDRRGMIE 131
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VF+R +E++DPPVANVD L++LFS+DQPK EP LTRFLVEAES+GIP L NKVELV
Sbjct: 132 DVFERRSEVVDPPVANVDRLVVLFSLDQPKPEPATLTRFLVEAESSGIPFVLVFNKVELV 191
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
DE+ + W+ RL +WGY+PLF SV+ + G +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 192 DEQTIAYWEDRLRSWGYDPLFLSVDKQSGFTALEEMLEGQTTVVVGPSGVGKSSLINALR 251
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+ S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP++ GG+LADT
Sbjct: 252 CNQDISEEDPIHKLVE--QNSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIASGGFLADT 309
Query: 241 PGFNQPSLLKVTKQSLAQTFPEV 263
PGFNQPSL+KVTK+SLA+TFPE+
Sbjct: 310 PGFNQPSLMKVTKKSLAETFPEI 332
>gi|226500088|ref|NP_001152253.1| EMB1688 [Zea mays]
gi|195654305|gb|ACG46620.1| EMB1688 [Zea mays]
Length = 453
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 168/263 (63%), Positives = 207/263 (78%), Gaps = 6/263 (2%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P + G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRGMIE
Sbjct: 76 MRVIVDATAPG----LDHHRGSDLLCVVRALLKKIRRRVLVGDRVLVGAVDWTDRRGMIE 131
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VF+R +E++DPPVANVD L++LFS+DQPK EP LTRFLVEAES+GIP L NKVELV
Sbjct: 132 DVFERRSEVVDPPVANVDRLVVLFSLDQPKPEPATLTRFLVEAESSGIPFVLVFNKVELV 191
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
DE+ + W+ RL +WGY+PLF SV+ + G +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 192 DEQTIAYWEDRLRSWGYDPLFLSVDKQSGFTALEEMLEGQTTVVVGPSGVGKSSLINALR 251
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+ S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP++ GG+LADT
Sbjct: 252 CNQDISEEDPIHKLVE--QNSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIASGGFLADT 309
Query: 241 PGFNQPSLLKVTKQSLAQTFPEV 263
PGFNQPSL+KVTK+SLA+TFPE+
Sbjct: 310 PGFNQPSLMKVTKKSLAETFPEI 332
>gi|357163020|ref|XP_003579599.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like isoform 1
[Brachypodium distachyon]
Length = 453
Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 167/263 (63%), Positives = 205/263 (77%), Gaps = 6/263 (2%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P G +LLCVVRALLKKI+RRVLVGD+V+VG++DW DRRG+IE
Sbjct: 75 MRVIVGSTPPG----LEHHQGTDLLCVVRALLKKIRRRVLVGDRVLVGAVDWADRRGVIE 130
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+VFQR +E++DPPVANVD L++LFS+DQP+ EP LTRFLVEAESTGIP L NKVELV
Sbjct: 131 DVFQRRSEVVDPPVANVDRLVVLFSLDQPQPEPATLTRFLVEAESTGIPFVLVFNKVELV 190
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
DE+ + W+ RL +WGY+PLF SV+ + GL +L + L QTTV+VGPSGVGKSSLINALR
Sbjct: 191 DEQTKSYWRDRLKSWGYDPLFLSVDQRSGLAALEEMLEAQTTVVVGPSGVGKSSLINALR 250
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
+ + + + E SKWF +QRVG VS KSG+GKHTTRHVSLLP+ GG+LADT
Sbjct: 251 CNQNIPEEDPIHQLVEQ--NSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIVDGGFLADT 308
Query: 241 PGFNQPSLLKVTKQSLAQTFPEV 263
PGFNQPSL+KVTK+ LA+TFPE+
Sbjct: 309 PGFNQPSLMKVTKKGLAETFPEI 331
>gi|116309286|emb|CAH66376.1| OSIGBa0092E09.3 [Oryza sativa Indica Group]
gi|125548024|gb|EAY93846.1| hypothetical protein OsI_15622 [Oryza sativa Indica Group]
Length = 377
Score = 333 bits (853), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 165/263 (62%), Positives = 206/263 (78%), Gaps = 5/263 (1%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P + G +LLCVVRALLKKI+RRVLVGD+V++G++DW RG+IE
Sbjct: 1 MRVIVGAA-PRGVEGA--RPGGDLLCVVRALLKKIRRRVLVGDRVLIGAVDWAGGRGVIE 57
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
VF+R E+ DPPVANVD L+LLF++DQP+ EP LTRFLV+AESTGIP L NKVELV
Sbjct: 58 GVFERRAEVADPPVANVDRLVLLFALDQPQPEPATLTRFLVDAESTGIPFVLVFNKVELV 117
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D++ ++ W+ R+ +WGY+PLF SV+ K GL +L + L QTTVIVGPSGVGKSSLINALR
Sbjct: 118 DDKTISYWRDRMKSWGYDPLFLSVDQKSGLSALEETLEGQTTVIVGPSGVGKSSLINALR 177
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
S+ + S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP++GGG+LADT
Sbjct: 178 SNQNISEEDPIHKLVEQ--NSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIAGGGFLADT 235
Query: 241 PGFNQPSLLKVTKQSLAQTFPEV 263
PGFNQPSL+KVTK+ LA+TFPE+
Sbjct: 236 PGFNQPSLMKVTKKGLAETFPEI 258
>gi|297602588|ref|NP_001052604.2| Os04g0381600 [Oryza sativa Japonica Group]
gi|38346636|emb|CAD40742.2| OSJNBa0072D21.6 [Oryza sativa Japonica Group]
gi|255675392|dbj|BAF14518.2| Os04g0381600 [Oryza sativa Japonica Group]
Length = 366
Score = 332 bits (852), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 165/263 (62%), Positives = 206/263 (78%), Gaps = 5/263 (1%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIV + P + G +LLCVVRALLKKI+RRVLVGD+V++G++DW RG+IE
Sbjct: 1 MRVIVGAA-PRGVEGA--RPGGDLLCVVRALLKKIRRRVLVGDRVLIGAVDWAGGRGVIE 57
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
VF+R E+ DPPVANVD L+LLF++DQP+ EP LTRFLV+AESTGIP L NKVELV
Sbjct: 58 GVFERRAEVADPPVANVDRLVLLFALDQPQPEPATLTRFLVDAESTGIPFVLVFNKVELV 117
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
D++ ++ W+ R+ +WGY+PLF SV+ K GL +L + L QTTVIVGPSGVGKSSLINALR
Sbjct: 118 DDKTISYWRDRMKSWGYDPLFLSVDQKSGLSALEETLEGQTTVIVGPSGVGKSSLINALR 177
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
S+ + S+ + E SKWF +QRVG VS KSG+GKHTTRHVSLLP++GGG+LADT
Sbjct: 178 SNQNISEEDPIHKLVEQ--NSKWFGEQRVGTVSKKSGKGKHTTRHVSLLPIAGGGFLADT 235
Query: 241 PGFNQPSLLKVTKQSLAQTFPEV 263
PGFNQPSL+KVTK+ LA+TFPE+
Sbjct: 236 PGFNQPSLMKVTKKGLAETFPEI 258
>gi|12324680|gb|AAG52303.1|AC011020_10 hypothetical protein [Arabidopsis thaliana]
gi|3176670|gb|AAC18794.1| Contains similarity to 41.9 KD protein SLL0898 gb|1001369 from
sequence of Synechocystis sp. gb|D64006 [Arabidopsis
thaliana]
Length = 474
Score = 332 bits (850), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 174/283 (61%), Positives = 207/283 (73%), Gaps = 23/283 (8%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIVQ P + +DK GVELLCVVR LLKKI R VLVGDKV+V +DWVDRR I
Sbjct: 91 MRVIVQDV-PESDNGEDDKIGVELLCVVRKLLKKIGRTVLVGDKVLVDKVDWVDRRAKII 149
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
NVF R +E+LDPPVANVDHL++LFS+DQPK++PF LTRFLVEAES GI +T+ALNK ELV
Sbjct: 150 NVFDRVSEVLDPPVANVDHLVILFSLDQPKIDPFTLTRFLVEAESIGIRITVALNKCELV 209
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
+E + +WK RL +W YEPLFCSV +K+G+D + LR+QT+VIVGPSGVGKSSLIN LR
Sbjct: 210 TQEEVESWKIRLRSWNYEPLFCSVGTKVGIDEIAFNLRNQTSVIVGPSGVGKSSLINILR 269
Query: 181 SSPHASDAADVDNWFEPI--------------------LGSKWFEDQRVGEVSTKSGRGK 220
SS + D + F+P+ KWFEDQ VGEVS ++GRGK
Sbjct: 270 SS-YGGDIKH-EEVFKPVTKPFVFYHILMTMYKGQNKKNKKKWFEDQSVGEVSHRNGRGK 327
Query: 221 HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
HTTR+V+LLPL GGGYLADTPGFN+ LLKVTKQ L FPE+
Sbjct: 328 HTTRNVTLLPLCGGGYLADTPGFNKHKLLKVTKQKLPLCFPEI 370
>gi|297841433|ref|XP_002888598.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297334439|gb|EFH64857.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 466
Score = 330 bits (845), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 176/278 (63%), Positives = 207/278 (74%), Gaps = 18/278 (6%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIVQ S D +DK GVELLCVVR LLKKI R VLVGDKV+V +DW+DRR I
Sbjct: 93 MRVIVQDVPESDYGD-DDKIGVELLCVVRKLLKKIGRTVLVGDKVLVDKVDWIDRRAKII 151
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
NVF R +EIL+PPVANVDHLL+LFS+DQPK++PF LTRFLVEAES GI +T+ALNK ELV
Sbjct: 152 NVFDRVSEILEPPVANVDHLLILFSLDQPKIDPFTLTRFLVEAESIGIRVTIALNKCELV 211
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
+E + +WK RL +W YEPLFCSV +K+GLD + L++QT+VIVGPSGVGKSSLIN LR
Sbjct: 212 TQEEVESWKIRLRSWNYEPLFCSVGTKVGLDEIAFTLQNQTSVIVGPSGVGKSSLINILR 271
Query: 181 SSPHASDAADVDNWFEP----ILG-----------SKWFEDQRVGEVSTKSGRGKHTTRH 225
SS A + F+P ILG KWFEDQ VG+VS ++G GKHTTR+
Sbjct: 272 SS--YGGAIKHEEVFKPVSFFILGLMYDGQKKKNKKKWFEDQSVGQVSHRNGLGKHTTRN 329
Query: 226 VSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
V+LLPL GGGYLADTPGFN+ LLKVTKQ L FPE+
Sbjct: 330 VTLLPLCGGGYLADTPGFNKHKLLKVTKQKLPLCFPEI 367
>gi|168012358|ref|XP_001758869.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690006|gb|EDQ76375.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 151/259 (58%), Positives = 189/259 (72%), Gaps = 16/259 (6%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
+C K G ELLCVVRA+LKKIKRRVLVGDKV+V +IDW+DRRGM+E+V R +EI +PP+
Sbjct: 16 NCGAKAGTELLCVVRAVLKKIKRRVLVGDKVLVSAIDWMDRRGMVEDVLDRRSEIAEPPI 75
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
ANV+HLL+LF+ D+PKLEP AL+RFLVEAESTGIP TL LNK +LV ++ L WK ++
Sbjct: 76 ANVEHLLVLFAFDRPKLEPIALSRFLVEAESTGIPFTLILNKADLVPQQELLDWKEKIAG 135
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
WGY+P+ CSV S+ G+ +++ LR +T V+VGPSGVGKSSLINALR D + ++ W
Sbjct: 136 WGYKPVICSVRSRSGVAPVMEILRQKTAVVVGPSGVGKSSLINALR------DVSGIEMW 189
Query: 195 FEPILGSKW---------FEDQRVGEVSTKSGRGKHTTRHVSLLPLSG-GGYLADTPGFN 244
E + FE +V EVS +SG+G+HTTRHVSLL L G GG LADTPGF+
Sbjct: 190 REKEAMQRLETVRDEHETFEKLQVSEVSLRSGKGRHTTRHVSLLRLPGDGGLLADTPGFS 249
Query: 245 QPSLLKVTKQSLAQTFPEV 263
QPSL VT L FPEV
Sbjct: 250 QPSLNLVTSGELGDLFPEV 268
>gi|302800916|ref|XP_002982215.1| hypothetical protein SELMODRAFT_54463 [Selaginella moellendorffii]
gi|300150231|gb|EFJ16883.1| hypothetical protein SELMODRAFT_54463 [Selaginella moellendorffii]
Length = 384
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 143/250 (57%), Positives = 179/250 (71%), Gaps = 11/250 (4%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ G++LLCVVRALLKKI+RRV+VGD V+V IDW D+RGMIE+V QR +E DPPVANVD
Sbjct: 36 RAGIKLLCVVRALLKKIRRRVMVGDSVLVSGIDWTDKRGMIEDVLQRRSETSDPPVANVD 95
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
LL+LFS+D+P+L+P L RFLVEAESTGIPL + LNK +LV +E+ ++W+ RL WGY+
Sbjct: 96 LLLVLFSLDRPRLDPVILNRFLVEAESTGIPLAVVLNKADLVTQEMKDSWEKRLTEWGYK 155
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR--SSPHASDAADVDNWFE 196
P CSVE+ +GL + L D+T+V+ GPSGVGKSSLIN LR S D +D +
Sbjct: 156 PYICSVETGMGLHDMAPLLEDKTSVVFGPSGVGKSSLINFLRGKSCLPPDDIQALDEVDD 215
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS-GGGYLADTPGFNQPSLLKVTKQS 255
++ RV EVS ++G G+HTTRHVSLL L G LADTPGF+ PSL VT S
Sbjct: 216 EVI--------RVNEVSYRTGSGRHTTRHVSLLHLPFRGAMLADTPGFSYPSLSMVTINS 267
Query: 256 LAQTFPEVCA 265
LA FPEV A
Sbjct: 268 LASLFPEVRA 277
>gi|302821157|ref|XP_002992243.1| hypothetical protein SELMODRAFT_134979 [Selaginella moellendorffii]
gi|300140010|gb|EFJ06740.1| hypothetical protein SELMODRAFT_134979 [Selaginella moellendorffii]
Length = 379
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/250 (56%), Positives = 179/250 (71%), Gaps = 11/250 (4%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ G++LLCVVRALLKKI+RRV+VGD V+V IDW D+RGMIE+V QR +E DPPVANVD
Sbjct: 21 RAGIKLLCVVRALLKKIRRRVMVGDSVLVSGIDWTDKRGMIEDVLQRRSETSDPPVANVD 80
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
LL+LFS+D+P+L+P L RFLVEAESTGIPL + LNK +LV +E+ ++W+ RL WGY+
Sbjct: 81 LLLVLFSLDRPRLDPVILNRFLVEAESTGIPLAVVLNKADLVTQEMKDSWEKRLTEWGYK 140
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL--RSSPHASDAADVDNWFE 196
P CSVE+ +GL + L D+T+V+ GPSGVGKSSLIN L RS D +D +
Sbjct: 141 PYICSVETGMGLHDMAPLLEDKTSVVFGPSGVGKSSLINFLRGRSCLPPDDIQALDEVDD 200
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS-GGGYLADTPGFNQPSLLKVTKQS 255
++ RV EVS ++G G+HTTRHVSLL L G LADTPGF+ P+L VT S
Sbjct: 201 EVI--------RVNEVSYRTGSGRHTTRHVSLLHLPFRGAMLADTPGFSYPNLSMVTSNS 252
Query: 256 LAQTFPEVCA 265
LA FPEV A
Sbjct: 253 LASLFPEVRA 262
>gi|334183717|ref|NP_176913.3| Minichromosome maintenance (MCM2/3/5) family protein [Arabidopsis
thaliana]
gi|332196528|gb|AEE34649.1| Minichromosome maintenance (MCM2/3/5) family protein [Arabidopsis
thaliana]
Length = 299
Score = 249 bits (636), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 124/182 (68%), Positives = 147/182 (80%), Gaps = 1/182 (0%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIVQ P + +DK GVELLCVVR LLKKI R VLVGDKV+V +DWVDRR I
Sbjct: 91 MRVIVQDV-PESDNGEDDKIGVELLCVVRKLLKKIGRTVLVGDKVLVDKVDWVDRRAKII 149
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
NVF R +E+LDPPVANVDHL++LFS+DQPK++PF LTRFLVEAES GI +T+ALNK ELV
Sbjct: 150 NVFDRVSEVLDPPVANVDHLVILFSLDQPKIDPFTLTRFLVEAESIGIRITVALNKCELV 209
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
+E + +WK RL +W YEPLFCSV +K+G+D + LR+QT+VIVGPSGVGKSSLIN LR
Sbjct: 210 TQEEVESWKIRLRSWNYEPLFCSVGTKVGIDEIAFNLRNQTSVIVGPSGVGKSSLINILR 269
Query: 181 SS 182
SS
Sbjct: 270 SS 271
>gi|55978769|gb|AAV68846.1| hypothetical protein AT1G67460 [Arabidopsis thaliana]
Length = 294
Score = 249 bits (636), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 124/182 (68%), Positives = 147/182 (80%), Gaps = 1/182 (0%)
Query: 1 MRVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60
MRVIVQ P + +DK GVELLCVVR LLKKI R VLVGDKV+V +DWVDRR I
Sbjct: 91 MRVIVQDV-PESDNGEDDKIGVELLCVVRKLLKKIGRTVLVGDKVLVDKVDWVDRRAKII 149
Query: 61 NVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
NVF R +E+LDPPVANVDHL++LFS+DQPK++PF LTRFLVEAES GI +T+ALNK ELV
Sbjct: 150 NVFDRVSEVLDPPVANVDHLVILFSLDQPKIDPFTLTRFLVEAESIGIRITVALNKCELV 209
Query: 121 DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
+E + +WK RL +W YEPLFCSV +K+G+D + LR+QT+VIVGPSGVGKSSLIN LR
Sbjct: 210 TQEEVESWKIRLRSWNYEPLFCSVGTKVGIDEIAFNLRNQTSVIVGPSGVGKSSLINILR 269
Query: 181 SS 182
SS
Sbjct: 270 SS 271
>gi|145351413|ref|XP_001420074.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580307|gb|ABO98367.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 352
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/247 (52%), Positives = 163/247 (65%), Gaps = 19/247 (7%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
D+T ELLCV RALLKKIK+RVLVGD+VV+ +DWV RGMI++V R +E+++PP+AN
Sbjct: 5 EDRT-TELLCVARALLKKIKKRVLVGDEVVLSGVDWVQSRGMIDDVVGRRSELVEPPIAN 63
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
VD LL+F+++QP LE LTRFLV E+T +P TL LNK EL+ E + W++RL +WG
Sbjct: 64 VDQALLVFALEQPPLEVKQLTRFLVSMEATKVPFTLVLNKCELLSEVEVADWRARLESWG 123
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+ SV + G++ L + LR +TTV+ GPSGVGKSSLIN R
Sbjct: 124 YDAKVISVATGQGVEELEEALRGKTTVLAGPSGVGKSSLINRFR---------------- 167
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
GS + Q V V T+SGRGKHTTRHVSLL L GG+LADTPGF PSL L
Sbjct: 168 --FGSALADLQSVKGVGTRSGRGKHTTRHVSLLRLDVGGFLADTPGFGYPSLEGFDTDKL 225
Query: 257 AQTFPEV 263
A FPE+
Sbjct: 226 AMCFPEI 232
>gi|217073450|gb|ACJ85084.1| unknown [Medicago truncatula]
Length = 262
Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 109/139 (78%), Positives = 124/139 (89%)
Query: 125 LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPH 184
+++WK+R WGY+P+FCSVES +D L +LRDQTTV+VGPSGVGKSSLINALRS+P
Sbjct: 1 MDSWKARFRGWGYQPIFCSVESGHNIDLLAFQLRDQTTVVVGPSGVGKSSLINALRSNPR 60
Query: 185 ASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244
D AD +NWFEPILGSKW++DQRV EVST+SGRGKHTTRHVSLLPLSGGGYLADTPGFN
Sbjct: 61 TCDTADGENWFEPILGSKWYDDQRVAEVSTRSGRGKHTTRHVSLLPLSGGGYLADTPGFN 120
Query: 245 QPSLLKVTKQSLAQTFPEV 263
QPSLLKVTKQSLAQTFPE+
Sbjct: 121 QPSLLKVTKQSLAQTFPEI 139
>gi|308808352|ref|XP_003081486.1| unnamed protein product [Ostreococcus tauri]
gi|116059949|emb|CAL56008.1| unnamed protein product [Ostreococcus tauri]
Length = 534
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 170/282 (60%), Gaps = 41/282 (14%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
ELLCV RALLKKIK+RVLVGD+V + IDWV+ R +I++V R +E+++PP+ANVD LL
Sbjct: 126 ELLCVARALLKKIKKRVLVGDEVELSGIDWVENRAVIDDVVGRRSELVEPPIANVDQALL 185
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+FS++QP LE LTRFLV E+T +P TL LNK EL+ +E + W++RL WGY+
Sbjct: 186 VFSLEQPPLEAKQLTRFLVSMEATKVPFTLVLNKCELLSDEEVADWRARLEGWGYDAKIV 245
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR---------------------S 181
SV + G+D L + LR +TTV+ GPSGVGKSSLIN R S
Sbjct: 246 SVATGRGVDELEEALRGKTTVLAGPSGVGKSSLINRFRYGSALAGALESVESSTSTSEGS 305
Query: 182 SPHASDAA------DVDNWFEPIL--GSKWFED------------QRVGEVSTKSGRGKH 221
+AA D++ + GS+ ED Q V V ++SGRG+H
Sbjct: 306 DSEGEEAARYITDLDIEGGGGGGVKRGSRSIEDEKWRVDLASLDLQSVKGVGSRSGRGRH 365
Query: 222 TTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
TTRHVSLL L GG+LADTPGF PSL + LA FPE+
Sbjct: 366 TTRHVSLLTLDIGGFLADTPGFGYPSLEGFDTEKLAMCFPEI 407
>gi|255082748|ref|XP_002504360.1| predicted protein [Micromonas sp. RCC299]
gi|226519628|gb|ACO65618.1| predicted protein [Micromonas sp. RCC299]
Length = 347
Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 132/252 (52%), Positives = 159/252 (63%), Gaps = 12/252 (4%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
D+ ELLCVVRALLKKIK+RVLVGD V V IDWVD+R M+E V R +E++DPPVAN
Sbjct: 30 GDEGPYELLCVVRALLKKIKQRVLVGDAVDVLGIDWVDQRAMVETVHARRSELVDPPVAN 89
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
VDH LL+F++++P LE LTRFLV E+TG+P TL LNK +L EE W +RL WG
Sbjct: 90 VDHALLVFALERPPLEAKQLTRFLVSMEATGVPFTLVLNKSDLCSEEQKADWAARLEQWG 149
Query: 137 YEPLFCSVESKLGLDSLLQRLR-----DQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
Y P F SV + G D TV+ GPSGVGKSSLIN LR+ A
Sbjct: 150 YVPRFVSVATGEGEDGFGSLSGPDPGPRSVTVLAGPSGVGKSSLINRLRAGGGGGGARGS 209
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251
+ E Q V VS+K GRG+HTTRHV+LLPL GG LADTPGF PSL +
Sbjct: 210 -------ISLDGLELQSVKAVSSKLGRGRHTTRHVTLLPLRSGGLLADTPGFGYPSLNTL 262
Query: 252 TKQSLAQTFPEV 263
T +L + FPE+
Sbjct: 263 TTATLPECFPEI 274
>gi|388519447|gb|AFK47785.1| unknown [Medicago truncatula]
Length = 262
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 108/139 (77%), Positives = 123/139 (88%)
Query: 125 LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPH 184
+++WK+R WGY+P+FCSVES +D L +LRDQTTV+VGPSGVGKSSLINALRS+P
Sbjct: 1 MDSWKARFRGWGYQPIFCSVESGHNIDLLAFQLRDQTTVVVGPSGVGKSSLINALRSNPR 60
Query: 185 ASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244
D AD +NWFEPILGSKW++DQRV EVST+SGRGKHTTRHVSLLPLSG GYLADTPGFN
Sbjct: 61 TCDTADGENWFEPILGSKWYDDQRVAEVSTRSGRGKHTTRHVSLLPLSGWGYLADTPGFN 120
Query: 245 QPSLLKVTKQSLAQTFPEV 263
QPSLLKVTKQSLAQTFPE+
Sbjct: 121 QPSLLKVTKQSLAQTFPEI 139
>gi|428778282|ref|YP_007170069.1| ribosome small subunit-dependent GTPase A [Halothece sp. PCC 7418]
gi|428692561|gb|AFZ45855.1| ribosome small subunit-dependent GTPase A [Halothece sp. PCC 7418]
Length = 350
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 125/248 (50%), Positives = 154/248 (62%), Gaps = 23/248 (9%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D LLC R+ LKKI ++V+VGD+ VV DW D+RG+I VF R TE+ PPVAN
Sbjct: 24 DTDETRLLCTRRSRLKKIGQKVMVGDRAVVAEPDWSDQRGVITEVFPRETELDRPPVANA 83
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
+ ++L+F++ QP L+P L+RFLV+AESTGI L L LNK +LV E W++RL WGY
Sbjct: 84 NQVVLVFALAQPPLDPLQLSRFLVKAESTGIDLCLCLNKQDLVSAEQRQHWETRLQDWGY 143
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
P F SVE++ GLD+L Q+LR++ T++ GPSGVGKSSLIN L P A
Sbjct: 144 APFFISVETEDGLDALQQQLRNKITILAGPSGVGKSSLINLL--IPQAQ----------- 190
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
RVG VS K RG+HTTRHV L L GG LADTPGFNQP L LA
Sbjct: 191 ---------LRVGAVSGKLQRGRHTTRHVELFQLPEGGLLADTPGFNQPD-LTCAPLELA 240
Query: 258 QTFPEVCA 265
FPE A
Sbjct: 241 YYFPEARA 248
>gi|443328253|ref|ZP_21056853.1| ribosome small subunit-dependent GTPase A [Xenococcus sp. PCC 7305]
gi|442792099|gb|ELS01586.1| ribosome small subunit-dependent GTPase A [Xenococcus sp. PCC 7305]
Length = 369
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/249 (48%), Positives = 157/249 (63%), Gaps = 24/249 (9%)
Query: 16 CNDKTGVE-LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
C+ + +E LLC R LKKI ++V+VGDKV + DW D RG I ++ R+TE+ PPV
Sbjct: 32 CDREGDLEYLLCTRRTRLKKIGQKVMVGDKVAIEEPDWQDGRGAIADILSRTTELQRPPV 91
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN D +LL+F++++PKL+P+ L+RFLV+ ESTG+ L L LNK +L+ E W++RL +
Sbjct: 92 ANADLMLLVFAVEEPKLDPWQLSRFLVQTESTGLELCLCLNKCDLIPESEQQQWQARLAS 151
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
WGY + S G+DSLL RL+D+ TV+VGPSGVGKSSLIN L DV
Sbjct: 152 WGYNAVLISTIQNYGIDSLLSRLKDKITVVVGPSGVGKSSLINQL--------IPDV--- 200
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
+ RVG VS K RG+HTTRHV L L GGG LAD+PGFNQPS +
Sbjct: 201 -----------EVRVGRVSGKLQRGRHTTRHVELFELPGGGLLADSPGFNQPS-MNYNPT 248
Query: 255 SLAQTFPEV 263
LA FPE
Sbjct: 249 DLALYFPEA 257
>gi|428210666|ref|YP_007083810.1| ribosome small subunit-dependent GTPase A [Oscillatoria acuminata
PCC 6304]
gi|427999047|gb|AFY79890.1| ribosome small subunit-dependent GTPase A [Oscillatoria acuminata
PCC 6304]
Length = 409
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/244 (47%), Positives = 156/244 (63%), Gaps = 23/244 (9%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79
T LLC R+ LKKI ++V+VGD+VV+ DW RG + VF R TE+ P +AN +
Sbjct: 83 TASTLLCTRRSRLKKIGQQVMVGDRVVIEEPDWEGGRGAVAEVFPRQTELDRPAIANANQ 142
Query: 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEP 139
+LL+F++++P L+P LTRFLV+AES G+ + L LNK++LV E+ W+ RL WGY+P
Sbjct: 143 VLLVFAIEEPTLDPHQLTRFLVKAESAGLSVLLCLNKIDLVPEQERIEWQERLENWGYQP 202
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
LF SVE+ +G+D++ RL+D+ T+I GPSGVGKSSLIN L
Sbjct: 203 LFISVETGVGIDAVRDRLKDKITLISGPSGVGKSSLINQLIP------------------ 244
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
F RVG+VS K GRG+HTTRHV L L GG LAD+PGFNQP+ L + LA+
Sbjct: 245 ----FATLRVGDVSGKLGRGRHTTRHVELFDLPSGGLLADSPGFNQPN-LDFPPRELAEY 299
Query: 260 FPEV 263
FPE
Sbjct: 300 FPEA 303
>gi|434396732|ref|YP_007130736.1| ribosome biogenesis GTPase RsgA [Stanieria cyanosphaera PCC 7437]
gi|428267829|gb|AFZ33770.1| ribosome biogenesis GTPase RsgA [Stanieria cyanosphaera PCC 7437]
Length = 368
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/240 (50%), Positives = 149/240 (62%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD VVV DW+DRRG I V R TE+ PPVANVD +LL+
Sbjct: 41 LLCTRRTRLKKIGQKVMVGDLVVVEEPDWLDRRGAIAEVLPRKTELQRPPVANVDQILLV 100
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++P L+P+ L+RFLV+AESTG+ L L LNK +L+ + W+ L WGY PLF S
Sbjct: 101 FALEEPGLDPWQLSRFLVKAESTGLDLCLCLNKSDLISHQEQQKWQIGLQKWGYAPLFIS 160
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V + G++ L L+++ TV+ GPSGVGKSSLIN L S
Sbjct: 161 VVKQQGIELLYHHLQNKITVVAGPSGVGKSSLINYLIPSI-------------------- 200
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
D RVGEVS K RG+HTTRHV L L GGG LAD+PGFNQPS L L FPE
Sbjct: 201 --DLRVGEVSGKLQRGRHTTRHVELFELPGGGLLADSPGFNQPS-LNCQPSDLISYFPEA 257
>gi|428778567|ref|YP_007170353.1| ribosome small subunit-dependent GTPase A [Dactylococcopsis salina
PCC 8305]
gi|428692846|gb|AFZ48996.1| ribosome small subunit-dependent GTPase A [Dactylococcopsis salina
PCC 8305]
Length = 352
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/246 (49%), Positives = 150/246 (60%), Gaps = 23/246 (9%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D V LLC R+ L+KI ++V+VGD+V V DW D+RG+I VF R TE+ PPVAN
Sbjct: 24 DDRAVRLLCTRRSRLQKIGQKVMVGDRVRVVEPDWTDQRGVINEVFPRETELDRPPVANA 83
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
+ L+L+F++ QP LEP L+RFLV+AESTGI L + LNK +LV W++RL WGY
Sbjct: 84 NQLVLVFALAQPPLEPMQLSRFLVKAESTGIDLCVCLNKKDLVSATERQEWEARLQGWGY 143
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
P SVE + GL++L ++L D+TT+ GPSGVGKSSLIN L P A
Sbjct: 144 SPFLISVEQQAGLEALQKQLNDRTTIFAGPSGVGKSSLINLL--IPQAQ----------- 190
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
RV VS K RG+HTTRHV L L GG LADTPGFNQP L +LA
Sbjct: 191 ---------LRVSTVSGKLQRGRHTTRHVELFSLPNGGLLADTPGFNQPD-LNCDPLTLA 240
Query: 258 QTFPEV 263
FPE
Sbjct: 241 TYFPEA 246
>gi|428309201|ref|YP_007120178.1| ribosome small subunit-dependent GTPase A [Microcoleus sp. PCC
7113]
gi|428250813|gb|AFZ16772.1| ribosome small subunit-dependent GTPase A [Microcoleus sp. PCC
7113]
Length = 383
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/254 (48%), Positives = 152/254 (59%), Gaps = 23/254 (9%)
Query: 10 PSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEI 69
PS S + V LLC R LKK+ +RV+VGD+VVV DW RG I V R T++
Sbjct: 52 PSEHSQPSIIQSVTLLCTRRTRLKKMGQRVMVGDRVVVEEPDWEGERGAIAEVLPRKTQL 111
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
PPVAN D +LL+F++ P L+P+ LTRFLV+AESTG+ + L LNK +LV +E L W
Sbjct: 112 DRPPVANADEILLVFALADPPLDPYQLTRFLVKAESTGLGICLCLNKKDLVSDEQLQEWT 171
Query: 130 SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
SRL WGYEP+ SV + GL+ L Q+L + T++ GPSGVGKSSLIN L
Sbjct: 172 SRLRNWGYEPVLISVHTHEGLEKLSQQLNHKITILAGPSGVGKSSLINEL--------IP 223
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
DV+ RV VS K RG+HTTRHV L L GG LADTPGFNQP +
Sbjct: 224 DVNV--------------RVAAVSGKLSRGRHTTRHVELFDLPAGGLLADTPGFNQPD-I 268
Query: 250 KVTKQSLAQTFPEV 263
+ LAQ FPE
Sbjct: 269 DCPPEELAQYFPEA 282
>gi|170077314|ref|YP_001733952.1| ribosome-associated GTPase [Synechococcus sp. PCC 7002]
gi|169884983|gb|ACA98696.1| probable ribosome-associated GTPase A [Synechococcus sp. PCC 7002]
Length = 365
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/242 (49%), Positives = 152/242 (62%), Gaps = 23/242 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC RA LKKI +RV+VGD+V+V +D+ DRRG I V R T + PPVAN D LLL+
Sbjct: 40 LLCTRRARLKKIGQRVMVGDQVIVEEVDFQDRRGAIAQVLSRRTVLDRPPVANADQLLLV 99
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P+ L+RFL++AESTG+PL L LNK +L+ ++ +TW RL WGY +F S
Sbjct: 100 FALAEPSLDPWQLSRFLIKAESTGLPLLLGLNKQDLLSKKEQHTWAERLQEWGYRAVFFS 159
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V G+ +L L+D+ TV+ GPSGVGKSSLIN L P
Sbjct: 160 VLQDAGIAALEASLKDKITVVAGPSGVGKSSLINRL--IPQV------------------ 199
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ RVGEVS K RG+HTTRHV L PL GG LAD+PGFNQP V Q L FPE+
Sbjct: 200 --ELRVGEVSGKLQRGRHTTRHVELFPLPQGGLLADSPGFNQPD-WSVLPQDLGGYFPEI 256
Query: 264 CA 265
A
Sbjct: 257 RA 258
>gi|428202600|ref|YP_007081189.1| ribosome small subunit-dependent GTPase A [Pleurocapsa sp. PCC
7327]
gi|427980032|gb|AFY77632.1| ribosome small subunit-dependent GTPase A [Pleurocapsa sp. PCC
7327]
Length = 369
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/240 (47%), Positives = 150/240 (62%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V + D+ D RG I VF R TE+ PPVAN D +LL+
Sbjct: 43 LLCTRRTRLKKIGQQVMVGDRVAIEEPDYADERGAIAEVFPRKTELNRPPVANADQILLV 102
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++P L+ + L+RFLV+AESTG+ L L LNK +LV + +W+ RL WGY P+F S
Sbjct: 103 FALEEPSLDAWQLSRFLVKAESTGLDLCLCLNKTDLVTKTQQQSWEERLGEWGYRPVFIS 162
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ + GL+ LL RL+++ T++ GPSGVGKSSLIN L +
Sbjct: 163 IAANRGLEQLLDRLKNKITILAGPSGVGKSSLINKLIPAV-------------------- 202
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+QRV +VS K +G+HTTRHV L L GG LADTPGFNQP L LAQ FPE
Sbjct: 203 --EQRVSQVSGKLQKGRHTTRHVELFELPDGGLLADTPGFNQPD-LDCDPAQLAQYFPEA 259
>gi|428223838|ref|YP_007107935.1| ribosome small subunit-dependent GTPase A [Geitlerinema sp. PCC
7407]
gi|427983739|gb|AFY64883.1| ribosome small subunit-dependent GTPase A [Geitlerinema sp. PCC
7407]
Length = 368
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 149/241 (61%), Gaps = 23/241 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+LLC R+ LKK +RV+VGD+V+V DW RG I V R TE+ PPVAN D +LL
Sbjct: 42 DLLCTRRSRLKKTGQRVMVGDRVLVEEPDWAGGRGAIAEVLPRQTELNRPPVANADQILL 101
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+F++ P +EP L+RFLV+AESTG+ + + NK +LV E W +RL WGYEP+
Sbjct: 102 VFALSAPPVEPLQLSRFLVKAESTGMRVQMCFNKRDLVSAEEQCQWHARLTDWGYEPIMI 161
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SV GL +L++L QTT+I GPSGVGKSSLIN L P L
Sbjct: 162 SVAQGAGLQDILRQLEGQTTIISGPSGVGKSSLINLLI----------------PEL--- 202
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ RVG+VS K RG+HTTRHV L L GGG LADTPGFNQP L T ++L Q FPE
Sbjct: 203 ---ELRVGDVSGKLQRGRHTTRHVELFHLPGGGLLADTPGFNQPE-LDCTPEALTQCFPE 258
Query: 263 V 263
+
Sbjct: 259 I 259
>gi|172036212|ref|YP_001802713.1| ribosome-associated GTPase [Cyanothece sp. ATCC 51142]
gi|171697666|gb|ACB50647.1| hypothetical protein cce_1297 [Cyanothece sp. ATCC 51142]
Length = 377
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/249 (47%), Positives = 147/249 (59%), Gaps = 23/249 (9%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D N+ LLC R LKKI + V+VGD++++ D+ D RG I V R TE+ PPV
Sbjct: 40 DHNNAPIYHLLCTRRTRLKKIGQMVMVGDRIIIEEPDYQDARGAIAQVLPRKTELSRPPV 99
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN + +LL+F++D+P LEP+ L+RFLV+AEST IP L LNK +L+ TW+ RL
Sbjct: 100 ANAEQMLLVFALDEPPLEPWQLSRFLVKAESTDIPCLLCLNKADLLTSTQQKTWQERLEK 159
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
WGY PLF SV + GL L RL+D+ T++ GPSGVGKSSLIN L DV
Sbjct: 160 WGYNPLFISVMTSQGLTDLKDRLKDKITILAGPSGVGKSSLINTL--------IPDV--- 208
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
QRV VS K +G+HTTRHV L L GG LADTPGFNQP L +
Sbjct: 209 -----------KQRVNSVSGKLQKGRHTTRHVELFELPDGGLLADTPGFNQPH-LDCSPS 256
Query: 255 SLAQTFPEV 263
L FPE
Sbjct: 257 QLIHYFPEA 265
>gi|354553008|ref|ZP_08972315.1| ribosome biogenesis GTPase RsgA [Cyanothece sp. ATCC 51472]
gi|353554838|gb|EHC24227.1| ribosome biogenesis GTPase RsgA [Cyanothece sp. ATCC 51472]
Length = 359
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/249 (47%), Positives = 147/249 (59%), Gaps = 23/249 (9%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D N+ LLC R LKKI + V+VGD++++ D+ D RG I V R TE+ PPV
Sbjct: 22 DHNNAPIYHLLCTRRTRLKKIGQMVMVGDRIIIEEPDYQDARGAIAQVLPRKTELSRPPV 81
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN + +LL+F++D+P LEP+ L+RFLV+AEST IP L LNK +L+ TW+ RL
Sbjct: 82 ANAEQMLLVFALDEPPLEPWQLSRFLVKAESTDIPCLLCLNKADLLTSTQQKTWQERLEK 141
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
WGY PLF SV + GL L RL+D+ T++ GPSGVGKSSLIN L DV
Sbjct: 142 WGYNPLFISVMTSQGLTDLKDRLKDKITILAGPSGVGKSSLINTL--------IPDV--- 190
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
QRV VS K +G+HTTRHV L L GG LADTPGFNQP L +
Sbjct: 191 -----------KQRVNSVSGKLQKGRHTTRHVELFELPDGGLLADTPGFNQPH-LDCSPS 238
Query: 255 SLAQTFPEV 263
L FPE
Sbjct: 239 QLIHYFPEA 247
>gi|218247953|ref|YP_002373324.1| ribosome-associated GTPase [Cyanothece sp. PCC 8801]
gi|218168431|gb|ACK67168.1| ribosome small subunit-dependent GTPase A [Cyanothece sp. PCC 8801]
Length = 376
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 151/242 (62%), Gaps = 23/242 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V++ D+ D RG I VF R TE+ PPVAN + +LL+
Sbjct: 49 LLCTRRTRLKKIGQKVMVGDRVIIEEPDYQDGRGAIAQVFPRKTELSRPPVANAEQILLV 108
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F+++ P L+P+ L+RFLV+AEST + L L NK++L+ + W+ RL WGY+PLF S
Sbjct: 109 FALENPPLDPWQLSRFLVKAESTSLSLCLCFNKLDLITDTQRQQWQERLEKWGYKPLFIS 168
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ + GL++L LR + T++ GPSGVGKSSLIN L P
Sbjct: 169 IMTDQGLEALTDCLRGKITILAGPSGVGKSSLINTL--IPEV------------------ 208
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+QRVG+VS K +G+HTTRHV L L GGG LADTPGFNQP L Q LA FPE
Sbjct: 209 --EQRVGKVSGKLNKGRHTTRHVELFELPGGGLLADTPGFNQPD-LDCDPQELALYFPEA 265
Query: 264 CA 265
A
Sbjct: 266 KA 267
>gi|257060725|ref|YP_003138613.1| ribosome-associated GTPase [Cyanothece sp. PCC 8802]
gi|256590891|gb|ACV01778.1| ribosome small subunit-dependent GTPase A [Cyanothece sp. PCC 8802]
Length = 405
Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 151/242 (62%), Gaps = 23/242 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V++ D+ D RG I VF R TE+ PPVAN + +LL+
Sbjct: 78 LLCTRRTRLKKIGQKVMVGDRVIIEEPDYQDGRGAIAQVFPRKTELSRPPVANAEQILLV 137
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F+++ P L+P+ L+RFLV+AEST + L L NK++L+ + W+ RL WGY+PLF S
Sbjct: 138 FALENPPLDPWQLSRFLVKAESTSLSLCLCFNKLDLITDTQRQQWQERLEKWGYKPLFIS 197
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ + GL++L LR + T++ GPSGVGKSSLIN L P
Sbjct: 198 IMTDQGLEALTDCLRGKITILAGPSGVGKSSLINTL--IPEV------------------ 237
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+QRVG+VS K +G+HTTRHV L L GGG LADTPGFNQP L Q LA FPE
Sbjct: 238 --EQRVGKVSGKLNKGRHTTRHVELFELPGGGLLADTPGFNQPD-LDCDPQELALYFPEA 294
Query: 264 CA 265
A
Sbjct: 295 KA 296
>gi|158333624|ref|YP_001514796.1| ribosome-associated GTPase [Acaryochloris marina MBIC11017]
gi|158303865|gb|ABW25482.1| ribosome small subunit-dependent GTPase A [Acaryochloris marina
MBIC11017]
Length = 361
Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 153/241 (63%), Gaps = 22/241 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+LLC R+ LKK++++V+VGD+VVV DW+ +RG I ++ R +++ PP+ANV+ +LL
Sbjct: 39 QLLCTRRSRLKKLRQQVMVGDQVVVEEPDWLGQRGAIASILPRQSQLARPPIANVNQILL 98
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+F++ +PKL+P LTRFLV AE T +P+ L NK +L W+ R+ WGY+P+
Sbjct: 99 MFALAEPKLDPQQLTRFLVTAEQTHLPIILCFNKRDLTTYATQKAWRDRMKRWGYDPILI 158
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+++ +GL +L + LR+ TV G SGVGKSSLIN F P +
Sbjct: 159 SLQTGVGLKALERPLREHITVASGLSGVGKSSLINH----------------FIPDI--- 199
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D RVG VS + G+G+HTTRHV L LS GG+LADTPGFNQPSL + L Q FPE
Sbjct: 200 ---DLRVGRVSERWGQGRHTTRHVELFELSKGGFLADTPGFNQPSLSNILPAQLGQCFPE 256
Query: 263 V 263
+
Sbjct: 257 I 257
>gi|411118347|ref|ZP_11390728.1| ribosome small subunit-dependent GTPase A [Oscillatoriales
cyanobacterium JSC-12]
gi|410712071|gb|EKQ69577.1| ribosome small subunit-dependent GTPase A [Oscillatoriales
cyanobacterium JSC-12]
Length = 400
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/240 (46%), Positives = 153/240 (63%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ LKK+ +RV+VGD+V + DW RG I + R++E+ PPVAN + +LL+
Sbjct: 80 LLCTRRSRLKKLGQRVMVGDRVEIEEPDWQGGRGAIARILPRTSELDRPPVANANQVLLV 139
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P LTRFL++AEST + + L L+K +LV + + W+ RLH WGYEP+F S
Sbjct: 140 FALAEPTLDPNQLTRFLIKAESTRLNVCLCLSKRDLVSQAEQDRWQQRLHQWGYEPIFIS 199
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ G++ LL++LRD+ T++ GPSGVGKSSLIN L P A
Sbjct: 200 THKQQGIERLLEQLRDRITIVSGPSGVGKSSLINYL--VPQA------------------ 239
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ RV +VS K RG+HTTRHV L L GG LADTPGFNQP L + ++LA FPEV
Sbjct: 240 --NLRVAKVSGKLARGRHTTRHVELFELPAGGLLADTPGFNQPE-LNCSPEALASYFPEV 296
>gi|428307329|ref|YP_007144154.1| ribosome biogenesis GTPase RsgA [Crinalium epipsammum PCC 9333]
gi|428248864|gb|AFZ14644.1| ribosome biogenesis GTPase RsgA [Crinalium epipsammum PCC 9333]
Length = 368
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/247 (46%), Positives = 147/247 (59%), Gaps = 23/247 (9%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
N G LLC RA LKKI ++V+VGD+V + DW RG I V R T++ PP+AN
Sbjct: 46 NSAFGYFLLCTRRARLKKIGQQVIVGDRVEIEEPDWAGGRGAIAQVLPRQTQLDRPPIAN 105
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
D +LL+F++ P +EP+ L+RFLV+AE TGI + L LNK +LV + W+ RLH WG
Sbjct: 106 TDQILLVFALADPPIEPYQLSRFLVKAELTGIDVCLCLNKSDLVTQLEQQQWRDRLHEWG 165
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+ L S + GL+ L +L ++ TV GPSGVGKSSLIN L D++
Sbjct: 166 YQSLLISAYAHTGLEQLYNQLANKITVFAGPSGVGKSSLINYL--------IPDINT--- 214
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
RVGEVS K RG+HTTRHV L L GGG LADTPGFNQP + T + L
Sbjct: 215 -----------RVGEVSGKLSRGRHTTRHVELFELPGGGLLADTPGFNQPD-IDCTPEEL 262
Query: 257 AQTFPEV 263
A FPE
Sbjct: 263 ADYFPEA 269
>gi|427724802|ref|YP_007072079.1| ribosome biogenesis GTPase RsgA [Leptolyngbya sp. PCC 7376]
gi|427356522|gb|AFY39245.1| ribosome biogenesis GTPase RsgA [Leptolyngbya sp. PCC 7376]
Length = 354
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/242 (47%), Positives = 154/242 (63%), Gaps = 23/242 (9%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+LLC R LKKI ++V+VGD+VVV ID D+RG I V R TE+ PPVAN + LL
Sbjct: 30 ADLLCTRRTRLKKIGQQVMVGDQVVVEEIDRQDKRGAIAAVLPRKTELDRPPVANANQLL 89
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
L+F++ +P L+P+ L+RFLV+AESTG+ L LALNK +L++ + W RL WGY+ +
Sbjct: 90 LVFALAEPALDPWQLSRFLVKAESTGLSLLLALNKQDLLESHECHAWHKRLSEWGYDAVL 149
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S+E ++GL+ L Q+L + +++ GPSGVGKSSLIN L P A+
Sbjct: 150 LSIEQRIGLEKLQQKLAGKISIVAGPSGVGKSSLINCL--IPEAT--------------- 192
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
RVG+VS K RG+HTTRHV L L GG LAD+PGFNQP ++ Q+L FP
Sbjct: 193 -----LRVGQVSGKLQRGRHTTRHVELFELPCGGLLADSPGFNQPD-WQILPQALGNYFP 246
Query: 262 EV 263
E+
Sbjct: 247 EI 248
>gi|428206760|ref|YP_007091113.1| ribosome small subunit-dependent GTPase A [Chroococcidiopsis
thermalis PCC 7203]
gi|428008681|gb|AFY87244.1| ribosome small subunit-dependent GTPase A [Chroococcidiopsis
thermalis PCC 7203]
Length = 368
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/240 (47%), Positives = 151/240 (62%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC RA LKK+ ++V+VGD+VV+ DW RG I V R +++ P +AN +LL+
Sbjct: 53 LLCTRRARLKKLGQQVMVGDRVVIEEPDWAGGRGAIGEVLPRQSQLDRPAIANAQQILLV 112
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P+ L++FLV+AESTG+ + L LNK +L+ + ++ W+ RL+ WGY+PLF S
Sbjct: 113 FALAEPDLDPYQLSKFLVKAESTGLEICLCLNKSDLLSVQQIDNWRDRLNRWGYQPLFIS 172
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V G+D + QRL+++ TVI GPSGVGKSSLIN L P A
Sbjct: 173 VHQGFGVDRVSQRLQEKITVIAGPSGVGKSSLINML--IPEAG----------------- 213
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
RVGEVS K RG+HTTRHV L L GG LADTPGFNQP L T + LA FPE
Sbjct: 214 ---LRVGEVSGKLLRGRHTTRHVELFELPTGGLLADTPGFNQPD-LDCTPEELASYFPEA 269
>gi|359459825|ref|ZP_09248388.1| GTPase RsgA [Acaryochloris sp. CCMEE 5410]
Length = 361
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 152/241 (63%), Gaps = 22/241 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+LLC R+ LKK+ ++V+VGD+VVV DW+ +RG I ++ R +++ PP+ANV+ +LL
Sbjct: 39 QLLCTRRSRLKKLGQQVMVGDQVVVEEPDWLGQRGAIASILPRQSQLARPPIANVNQILL 98
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+F++ +PKL+P LTRFLV AE T +P+ L NK +L W+ R+ WGY+P+
Sbjct: 99 MFALAEPKLDPQQLTRFLVTAEQTHLPIILCFNKRDLTSYATQKAWRDRMKRWGYDPILI 158
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+++ +GL +L + LR+ TV G SGVGKSSLIN F P +
Sbjct: 159 SLQTGVGLKALERPLREHITVASGLSGVGKSSLINH----------------FIPNI--- 199
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D RVG VS + G+G+HTTRHV L LS GG+LADTPGFNQPSL + L Q FPE
Sbjct: 200 ---DLRVGRVSERWGQGRHTTRHVELFELSKGGFLADTPGFNQPSLGNILPAQLGQCFPE 256
Query: 263 V 263
+
Sbjct: 257 I 257
>gi|126656133|ref|ZP_01727517.1| ribosome-associated GTPase [Cyanothece sp. CCY0110]
gi|126622413|gb|EAZ93119.1| ribosome-associated GTPase [Cyanothece sp. CCY0110]
Length = 377
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/249 (47%), Positives = 147/249 (59%), Gaps = 23/249 (9%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D N+ LLC R LKKI + V+VGD+VVV D+ D RG I V R TE+ PPV
Sbjct: 40 DHNNTLIHHLLCTRRTRLKKIGQTVMVGDRVVVEEPDYQDARGAIAQVLPRKTELSRPPV 99
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN + +LL+F++D+P LEP+ L+RFLV+AEST IP L LNK +L+ TW+ RL
Sbjct: 100 ANAEQMLLVFALDEPPLEPWQLSRFLVKAESTEIPFLLCLNKADLLTSTQQKTWQERLEK 159
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
WGY+PL SV + GL L L+D+ T++ GPSGVGKSSLIN L DV
Sbjct: 160 WGYQPLLISVMTSQGLTELKDCLKDKITILAGPSGVGKSSLINTL--------VPDV--- 208
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
QRV +VS K +G+HTTRHV L L GG LADTPGFNQP L +
Sbjct: 209 -----------KQRVNQVSGKLQKGRHTTRHVELFELPDGGLLADTPGFNQPH-LDCSPS 256
Query: 255 SLAQTFPEV 263
L FPE
Sbjct: 257 ELIHYFPEA 265
>gi|254414538|ref|ZP_05028304.1| ribosome small subunit-dependent GTPase A, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196178768|gb|EDX73766.1| ribosome small subunit-dependent GTPase A, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 365
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 146/240 (60%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ LKKI +RV+VGD+VV+ DW RG I V R T++ PPVAN + +LL+
Sbjct: 48 LLCTRRSRLKKIGQRVMVGDRVVIEEPDWTGNRGAIAEVLPRKTQLDRPPVANAEQILLV 107
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+ + L+RFLV+AESTG + L LNK +LV E W+ RL+ WGY+P+F S
Sbjct: 108 FALAEPTLDAYQLSRFLVKAESTGFQVCLCLNKSDLVTPEEQQQWQQRLNAWGYQPIFIS 167
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V + GL L RL + TV+ G SGVGKSSLIN L +P A
Sbjct: 168 VYTNTGLAELSDRLNQKITVLAGLSGVGKSSLINQL--APEA------------------ 207
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ RVGEV+ K GRG+HTTRHV L L GG LADTPGFNQP L T L FPE
Sbjct: 208 --NLRVGEVTGKLGRGRHTTRHVELFELPQGGLLADTPGFNQPD-LDCTPADLIHHFPEA 264
>gi|416382917|ref|ZP_11684375.1| Ribosome small subunit-stimulated GTPase EngC [Crocosphaera
watsonii WH 0003]
gi|357265330|gb|EHJ14109.1| Ribosome small subunit-stimulated GTPase EngC [Crocosphaera
watsonii WH 0003]
Length = 377
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/249 (46%), Positives = 148/249 (59%), Gaps = 23/249 (9%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ND LLC R LKKI + V+VGD+V+V D+ D RG I V R T++ PPV
Sbjct: 40 DYNDAAISHLLCTRRTRLKKIGQTVMVGDRVMVEEPDYQDARGAIAQVLDRKTQLSRPPV 99
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN + +LL+F++D+P LEP+ L+RFL++AEST IP L LNK +L+ TW+ RL
Sbjct: 100 ANAEQMLLVFALDEPLLEPWQLSRFLIKAESTEIPFLLCLNKADLLTSTQQKTWEERLEK 159
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
WGY PL SV++ GL++L L+D+ T++ GPSGVGKSSLIN L P
Sbjct: 160 WGYNPLLISVKTFQGLEALKNCLKDKITILAGPSGVGKSSLINTL--IPQVK-------- 209
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
QRV VS K +G+HTTRHV L L GG LADTPGFN+P+ L +
Sbjct: 210 ------------QRVNRVSGKLQKGRHTTRHVELFELPQGGLLADTPGFNKPN-LDCSPS 256
Query: 255 SLAQTFPEV 263
L FPE
Sbjct: 257 QLIHYFPEA 265
>gi|67921312|ref|ZP_00514831.1| Protein of unknown function DUF258 [Crocosphaera watsonii WH 8501]
gi|67857429|gb|EAM52669.1| Protein of unknown function DUF258 [Crocosphaera watsonii WH 8501]
Length = 377
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/249 (46%), Positives = 148/249 (59%), Gaps = 23/249 (9%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ND LLC R LKKI + V+VGD+V+V D+ D RG I V R T++ PPV
Sbjct: 40 DYNDAAISHLLCTRRTRLKKIGQTVMVGDRVMVEEPDYQDARGAIAQVLDRKTQLSRPPV 99
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN + +LL+F++D+P LEP+ L+RFL++AEST IP L LNK +L+ TW+ RL
Sbjct: 100 ANAEQMLLVFALDEPLLEPWQLSRFLIKAESTEIPFLLCLNKADLLTSTQQKTWEERLEK 159
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
WGY PL SV++ GL++L L+D+ T++ GPSGVGKSSLIN L P
Sbjct: 160 WGYNPLLISVKTFQGLEALKNCLKDKITILAGPSGVGKSSLINTL--IPQVK-------- 209
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
QRV VS K +G+HTTRHV L L GG LADTPGFN+P+ L +
Sbjct: 210 ------------QRVNRVSGKLQKGRHTTRHVELFELPQGGLLADTPGFNKPN-LDCSPS 256
Query: 255 SLAQTFPEV 263
L FPE
Sbjct: 257 QLIHYFPEA 265
>gi|75906606|ref|YP_320902.1| ribosome-associated GTPase [Anabaena variabilis ATCC 29413]
gi|123731639|sp|Q3MG79.1|RSGA_ANAVT RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|75700331|gb|ABA20007.1| GTPase EngC [Anabaena variabilis ATCC 29413]
Length = 370
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 146/238 (61%), Gaps = 23/238 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R LKKI ++V+VGD+VVV DW RG I V R T++ PP+AN D +LL+F+
Sbjct: 57 CTRRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIAEVLSRQTQLDRPPIANADQILLVFA 116
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P LEP+ L+RFLV+AE+TG+ + L LNK +LV E+ RL WGY+PLF SVE
Sbjct: 117 VADPPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVE 176
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ +D + + L ++ TV+ GPSGVGKSSLINAL D+
Sbjct: 177 KQINIDQIAKYLSNKITVVAGPSGVGKSSLINAL--------IPDI-------------- 214
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ RVGEVS K RG+HTTRHV L L GG LADTPGFNQP + + + L FPE
Sbjct: 215 NLRVGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEA 271
>gi|384247577|gb|EIE21063.1| GTPase EngC, partial [Coccomyxa subellipsoidea C-169]
Length = 340
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 161/250 (64%), Gaps = 11/250 (4%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
ELLC VR +LKKIK+ VLVGD+V V IDW DRRG ++ V R +E+ DP VANVD +LL
Sbjct: 2 ELLCTVRGILKKIKQSVLVGDRVRVAGIDWDDRRGTVDEVLPRRSELQDPAVANVDQVLL 61
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+F++++P L+ TRFLV E+ +P T+ LNK +LV E + + + +WGY+ +
Sbjct: 62 VFALERPPLDLRTATRFLVSTEAADLPATVVLNKADLVPSEECSQALAEIESWGYDAIAV 121
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR---------SSPHASDAADVDN 193
S + GLD L + L+ + +V+ GPSGVGKSSLINA++ S+ +S +DN
Sbjct: 122 SAATGRGLDRLSEVLKGRVSVVAGPSGVGKSSLINAIKLEADAASSSSAMASSGTPTLDN 181
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
W + Q VG++ T GRGKHTTRHVSLL ++ GG LAD+PGFNQPSL +
Sbjct: 182 WRGMQAAVERLGLQPVGDL-TNLGRGKHTTRHVSLLEVA-GGLLADSPGFNQPSLDDLNV 239
Query: 254 QSLAQTFPEV 263
SL+ FPEV
Sbjct: 240 ASLSDCFPEV 249
>gi|434407645|ref|YP_007150530.1| ribosome small subunit-dependent GTPase A [Cylindrospermum stagnale
PCC 7417]
gi|428261900|gb|AFZ27850.1| ribosome small subunit-dependent GTPase A [Cylindrospermum stagnale
PCC 7417]
Length = 358
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/249 (44%), Positives = 150/249 (60%), Gaps = 23/249 (9%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
D + + LLC R LKKI ++V+VGD+V++ DW RG + +V R +E+ P +AN
Sbjct: 35 QDNSRLILLCTRRTRLKKIGQQVMVGDRVIIEEPDWAGGRGAVADVLPRHSELDRPAIAN 94
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
V+ +LL+F++ P LEP+ L+RFLV+AE+TG+ + L LNK +L+ E RL WG
Sbjct: 95 VNQILLVFAVADPPLEPYQLSRFLVKAETTGVDVLLCLNKSDLITPEAQQQISDRLSAWG 154
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+PLF SV+++L LD + Q L ++ TV+ GPSGVGKSSLIN L +
Sbjct: 155 YQPLFISVQNQLNLDQVSQHLSNKITVVAGPSGVGKSSLINQLIPDTNL----------- 203
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
RVGEVS K RG+HTTRH+ L L GG LADTPGFNQP L T + L
Sbjct: 204 -----------RVGEVSGKLARGRHTTRHIELFDLPNGGLLADTPGFNQPD-LDCTPEEL 251
Query: 257 AQTFPEVCA 265
FPE A
Sbjct: 252 LYYFPEARA 260
>gi|113475425|ref|YP_721486.1| ribosome-associated GTPase [Trichodesmium erythraeum IMS101]
gi|110166473|gb|ABG51013.1| ribosome small subunit-dependent GTPase A [Trichodesmium erythraeum
IMS101]
Length = 374
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 154/247 (62%), Gaps = 30/247 (12%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ LKKI ++V+VGD+V++ DWV RG I V R TE+ PP+ANV+ ++L+
Sbjct: 49 LLCTRRSRLKKIGQKVMVGDRVIIEDPDWVGGRGAIAEVLPRETELDRPPIANVNQVMLV 108
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P ALTRFL++AESTG+ + L L+K +LV + W+S++ WGYEP F S
Sbjct: 109 FALAEPNLDPVALTRFLLKAESTGLEICLCLSKCDLVSATKMEEWRSQISEWGYEPFFIS 168
Query: 144 VESKLGL-------DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
+++ +GL +SL ++LR++ TV+ GPSGVGKSSLIN L DV
Sbjct: 169 LKTDVGLGVVKDGSNSLWEKLRNKITVVSGPSGVGKSSLINYL--------IPDV----- 215
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
+ RV VS K RG+HTTRHV L L GG LADTPGFNQP L+ L
Sbjct: 216 ---------NLRVSAVSGKLSRGRHTTRHVELFELPNGGLLADTPGFNQPQ-LECEAIEL 265
Query: 257 AQTFPEV 263
A FPE
Sbjct: 266 AHLFPEA 272
>gi|443312688|ref|ZP_21042303.1| ribosome small subunit-dependent GTPase A [Synechocystis sp. PCC
7509]
gi|442777144|gb|ELR87422.1| ribosome small subunit-dependent GTPase A [Synechocystis sp. PCC
7509]
Length = 351
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 113/240 (47%), Positives = 150/240 (62%), Gaps = 24/240 (10%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC RALLKK+ ++V+VGD+V V DW RG I VF R T++ PPVAN +LL+
Sbjct: 39 LLCTRRALLKKMGQKVMVGDRVEVVEPDWAGGRGAISQVFPRHTQLDRPPVANAQQILLV 98
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++PK+EP+ L+RFL++AE+TG+ + L LNK +L+ E L W+ RLH WGY+P+F S
Sbjct: 99 FALEEPKIEPYQLSRFLIKAETTGLEVYLYLNKSDLLTPEQLLDWRKRLHKWGYDPVFIS 158
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V + ++ + +L ++ TV+ GPSGVGKSSLIN L P+A
Sbjct: 159 VH-QAAIEQIQGQLDNKITVVAGPSGVGKSSLINYL--IPNAK----------------- 198
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
R EVS K GRG+HTTRHV L L GG LADTPGFNQP L + L FPE
Sbjct: 199 ---VRTSEVSGKLGRGRHTTRHVELFQLPKGGLLADTPGFNQPD-LDCEPEELINYFPEA 254
>gi|427418425|ref|ZP_18908608.1| ribosome small subunit-dependent GTPase A [Leptolyngbya sp. PCC
7375]
gi|425761138|gb|EKV01991.1| ribosome small subunit-dependent GTPase A [Leptolyngbya sp. PCC
7375]
Length = 371
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 153/241 (63%), Gaps = 24/241 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LC RA LKK+ ++V+VGD+V+V +DW D+RG I + R+ + PP++NVD +LL+
Sbjct: 39 FLCTRRARLKKLGQQVVVGDRVLVEEMDWQDKRGAIATIQTRTNLLDRPPISNVDQILLV 98
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P L+RFLV+AESTGIP+TL LNK +L+ +E ++ W++RL WGYEPL S
Sbjct: 99 FALAEPALDPAQLSRFLVKAESTGIPVTLCLNKRDLLSQESIDHWQTRLSDWGYEPLLVS 158
Query: 144 VESKLGLD-SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
V L +L++ L+ + +V+ GPSGVGKSSL+N L DV
Sbjct: 159 VREDKALPVALIETLKHRVSVVAGPSGVGKSSLLNRL--------VPDV----------- 199
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D R VS K GRG+HTTRHV L L GG LADTPGFNQP L ++L FPE
Sbjct: 200 ---DARTNAVSGKLGRGRHTTRHVELFDLPTGGLLADTPGFNQPD-LTCPVETLMACFPE 255
Query: 263 V 263
+
Sbjct: 256 I 256
>gi|17229941|ref|NP_486489.1| ribosome-associated GTPase [Nostoc sp. PCC 7120]
gi|38257718|sp|Q8YUA3.1|RSGA1_ANASP RecName: Full=Putative ribosome biogenesis GTPase RsgA 1
gi|17131541|dbj|BAB74148.1| alr2449 [Nostoc sp. PCC 7120]
Length = 370
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 111/235 (47%), Positives = 147/235 (62%), Gaps = 23/235 (9%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R LKKI ++V+VGD+VVV DW RG I +V R T++ PP+AN D +LL+F++
Sbjct: 60 RTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIADVLSRQTQLDRPPIANADQILLVFAVAD 119
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
P LEP+ L+RFLV+AE+TG+ + L LNK +LV E+ RL WGY+PLF SVE+++
Sbjct: 120 PPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVENQI 179
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
+D + + L ++ TV+ GPSGVGKSSLINAL + N + R
Sbjct: 180 NIDQIAKYLSNKITVVAGPSGVGKSSLINAL-----------IPNI-----------NLR 217
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
VGEVS K RG+HTTRHV L L GG LADTPGFNQP + + + L FPE
Sbjct: 218 VGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEA 271
>gi|427706647|ref|YP_007049024.1| ribosome biogenesis GTPase RsgA [Nostoc sp. PCC 7107]
gi|427359152|gb|AFY41874.1| ribosome biogenesis GTPase RsgA [Nostoc sp. PCC 7107]
Length = 359
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 151/250 (60%), Gaps = 25/250 (10%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+VVV DW RG I V R+ ++ P +ANV+ ++L+
Sbjct: 43 LLCTRRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAISEVLPRTGQLDRPAIANVNQIMLV 102
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP+ L+RFLV+AESTG + + LNK +L+ + RL WGYEPLF S
Sbjct: 103 FAVADPPLEPYQLSRFLVKAESTGWDVVICLNKSDLISAQEQREISDRLLGWGYEPLFIS 162
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V+S L +D +L L +TTVI GPSGVGKSSLINAL D+
Sbjct: 163 VQSSLNIDQILTYLSHKTTVIAGPSGVGKSSLINAL--------IPDI------------ 202
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ RVGE+S K RG+HTTRHV L L GG LADTPGFNQP L + L Q FPE
Sbjct: 203 --NLRVGEISGKLARGRHTTRHVELFELPDGGLLADTPGFNQPD-LDYQPEELVQYFPE- 258
Query: 264 CAVGLLYMIH 273
A LL + H
Sbjct: 259 -ARKLLKVAH 267
>gi|119486419|ref|ZP_01620477.1| ribosome-associated GTPase [Lyngbya sp. PCC 8106]
gi|119456321|gb|EAW37452.1| ribosome-associated GTPase [Lyngbya sp. PCC 8106]
Length = 389
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/261 (46%), Positives = 151/261 (57%), Gaps = 44/261 (16%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V++ DW RG I V R TE+ PP+AN D +LL+
Sbjct: 51 LLCTRRTRLKKIGQKVMVGDRVMIEEPDWTGGRGAIAEVLPRQTELTRPPIANADQILLV 110
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P AL+RFLV+AESTG+ + L LNK +LV + L W+ RL +WGY+P F S
Sbjct: 111 FAVAEPDLDPQALSRFLVKAESTGLEVCLGLNKCDLVTSQQLQHWRERLSSWGYQPFFIS 170
Query: 144 ----VESKLGLDSLLQR-----------------LRDQTTVIVGPSGVGKSSLINALRSS 182
VE L D+ +QR L D+ TVI GPSGVGKSSLIN L
Sbjct: 171 VYQGVEFILEHDNEIQRYSISDFKSTINHSLIDQLTDKITVICGPSGVGKSSLINLL--- 227
Query: 183 PHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
D+ D RVG VS K GRG+HTTRHV L L G LADTPG
Sbjct: 228 -----IPDI--------------DLRVGAVSGKLGRGRHTTRHVELFELPSKGLLADTPG 268
Query: 243 FNQPSLLKVTKQSLAQTFPEV 263
FNQP LL+ Q LA FPE
Sbjct: 269 FNQP-LLECEPQELADYFPEA 288
>gi|427717142|ref|YP_007065136.1| ribosome biogenesis GTPase RsgA [Calothrix sp. PCC 7507]
gi|427349578|gb|AFY32302.1| ribosome biogenesis GTPase RsgA [Calothrix sp. PCC 7507]
Length = 359
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 112/240 (46%), Positives = 144/240 (60%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+VVV DW RG I V R +++ PP+ANV+ +LL+
Sbjct: 43 LLCTRRMRLKKIGQQVMVGDRVVVEEPDWSGGRGAIAEVLSRQSQLDRPPIANVNQILLV 102
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP+ L+RFL++AEST + + L LNK +LV E RL WGY+P+F S
Sbjct: 103 FAVADPPLEPYQLSRFLIKAESTDVDVVLCLNKSDLVTPEEQQQISDRLCAWGYQPIFIS 162
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V ++L +D + L ++ TVI GPSGVGKSSLIN L + +
Sbjct: 163 VSNELNIDQVANYLSNKMTVIAGPSGVGKSSLINKLIPNTNL------------------ 204
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
RVGEVS K RG+HTTRHV L L GG LADTPGFNQP L T + L FPE
Sbjct: 205 ----RVGEVSGKLARGRHTTRHVELFELPDGGLLADTPGFNQPD-LDCTPEELIHYFPEA 259
>gi|388519253|gb|AFK47688.1| unknown [Medicago truncatula]
Length = 217
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/125 (81%), Positives = 114/125 (91%), Gaps = 2/125 (1%)
Query: 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMI 59
MRVIVQ S+PS T D + + G ELLCVVRALLKKIKRRV+VGDKV+VGS+DWVDRR MI
Sbjct: 86 MRVIVQ-SQPSGTFQDASSRGGAELLCVVRALLKKIKRRVMVGDKVLVGSVDWVDRRAMI 144
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
ENVFQR++E+LDPPVANVDHLL+LFS+DQPKLEPF LTRFLVEAESTGIPLTLALNK EL
Sbjct: 145 ENVFQRNSEMLDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTGIPLTLALNKTEL 204
Query: 120 VDEEV 124
VD+EV
Sbjct: 205 VDKEV 209
>gi|220910045|ref|YP_002485356.1| ribosome-associated GTPase [Cyanothece sp. PCC 7425]
gi|219866656|gb|ACL46995.1| ribosome small subunit-dependent GTPase A [Cyanothece sp. PCC 7425]
Length = 364
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 148/243 (60%), Gaps = 24/243 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
ELLC R+ LKKI ++V+VGD+V V DW +RG I V R T++ PPVAN D +
Sbjct: 47 ATELLCTRRSRLKKIGQQVMVGDRVGVEEPDWAGQRGAIAEVLPRQTQLSRPPVANADQI 106
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P +P+ L+RFLV AE+TG+ + L L+K +LV E W RL WGYEPL
Sbjct: 107 LLVFALAEPHPDPYQLSRFLVTAETTGLEVVLCLSKADLVSEPEEQQWCDRLQQWGYEPL 166
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S+ ++ GL L +L +V+ GPSGVGKSSLIN L P+
Sbjct: 167 LISLLTQQGLGELTSQLGGHLSVVSGPSGVGKSSLINQLI----------------PLAN 210
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
S RVG+VS ++GRG+HTTRHV L L GG LADTPGFNQP+L+ +T L F
Sbjct: 211 S------RVGQVS-QAGRGRHTTRHVELFGLPAGGLLADTPGFNQPALV-MTPTELVHCF 262
Query: 261 PEV 263
PE
Sbjct: 263 PEA 265
>gi|119513120|ref|ZP_01632172.1| ribosome-associated GTPase [Nodularia spumigena CCY9414]
gi|119462217|gb|EAW43202.1| ribosome-associated GTPase [Nodularia spumigena CCY9414]
Length = 377
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 145/240 (60%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V+V DW RG I NV R + + P +ANVD +LL
Sbjct: 61 LLCTRRTRLKKIGQQVMVGDRVIVSEPDWSGGRGAISNVLPRESLLDRPAIANVDQILLA 120
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP+ L+RFL++AEST + + L LNK +LV +V RL WGY+PLF S
Sbjct: 121 FAVTDPPLEPYQLSRFLLKAESTDVDVLLCLNKSDLVSPQVQQEISDRLLGWGYKPLFIS 180
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V++ + +D+LL+ L + TVI GPSGVGKSSLIN L P L
Sbjct: 181 VQNNINIDALLKYLNHKITVIAGPSGVGKSSLINVLI----------------PTL---- 220
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ RVGEVS K RG+HTTRH L L GGG LADTPGFNQP L + L FPE
Sbjct: 221 --NLRVGEVSGKLARGRHTTRHTELFELPGGGLLADTPGFNQPD-LDCRPEELIYYFPEA 277
>gi|427733745|ref|YP_007053289.1| ribosome small subunit-dependent GTPase A [Rivularia sp. PCC 7116]
gi|427368786|gb|AFY52742.1| ribosome small subunit-dependent GTPase A [Rivularia sp. PCC 7116]
Length = 392
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/240 (46%), Positives = 147/240 (61%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ LKKI ++V+VGD+VV+ DW RG I +VF R +E+ P +ANV+ +LL+
Sbjct: 76 LLCTRRSRLKKIGQQVIVGDRVVIEEPDWAGGRGAIGDVFPRHSELDRPAIANVNQILLV 135
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP+ L+RFLV+ ESTG+ + L LNK +L+ + K RL+ WGY+P F S
Sbjct: 136 FAVTDPPLEPYQLSRFLVKGESTGLDVVLCLNKSDLIASQEQAEIKERLNAWGYQPEFIS 195
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V + +D++ LR + TVI G SGVGKSSLIN L P+A
Sbjct: 196 VYKDINIDAVENILRSKITVIAGASGVGKSSLINTL--IPNA------------------ 235
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ RV EVS K RG+HTTRHV L + GGG LADTPGFNQP L T + L FPE
Sbjct: 236 --NLRVAEVSGKLARGRHTTRHVELFEIPGGGLLADTPGFNQPD-LDCTPEELVSYFPEA 292
>gi|425454672|ref|ZP_18834402.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9807]
gi|389804605|emb|CCI16262.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9807]
Length = 358
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 150/243 (61%), Gaps = 23/243 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ DR+G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFDDRQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLAAWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP +K + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPD-IKCLPEQLTFYF 247
Query: 261 PEV 263
PEV
Sbjct: 248 PEV 250
>gi|443669281|ref|ZP_21134514.1| ribosome small subunit-dependent GTPase A [Microcystis aeruginosa
DIANCHI905]
gi|159029435|emb|CAO90813.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330443|gb|ELS45158.1| ribosome small subunit-dependent GTPase A [Microcystis aeruginosa
DIANCHI905]
Length = 358
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 151/243 (62%), Gaps = 23/243 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ DR+G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFDDRQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL +WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEIWGDRLASWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPD-INCSPEQLTFYF 247
Query: 261 PEV 263
PEV
Sbjct: 248 PEV 250
>gi|390441189|ref|ZP_10229343.1| putative ribosome biogenesis GTPase RsgA [Microcystis sp. T1-4]
gi|389835502|emb|CCI33469.1| putative ribosome biogenesis GTPase RsgA [Microcystis sp. T1-4]
Length = 358
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 152/243 (62%), Gaps = 23/243 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V +++ D++G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEVNFADQQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY+P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIELWGDRLAGWGYQPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPD-INCSPEQLTFYF 247
Query: 261 PEV 263
PEV
Sbjct: 248 PEV 250
>gi|414078371|ref|YP_006997689.1| ribosome small subunit-dependent GTPase A [Anabaena sp. 90]
gi|413971787|gb|AFW95876.1| ribosome small subunit-dependent GTPase A [Anabaena sp. 90]
Length = 385
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 146/240 (60%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V+V DW RG + V R +++ P +ANV+ +LL+
Sbjct: 69 LLCTRRTRLKKIGQQVMVGDRVIVEEPDWTGGRGAVGEVLPRHSQLNRPAIANVNQILLV 128
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP L+RFL++AESTG+ + L LNK +LV E RL WGY+PLF S
Sbjct: 129 FAVADPPLEPIQLSRFLIKAESTGVDVLLCLNKCDLVSLEEKQQINDRLLAWGYQPLFIS 188
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V++ + ++ + L+D+ TVI GPSGVGKSSLIN+L D+
Sbjct: 189 VQNNININQIATYLQDKITVIAGPSGVGKSSLINSL--------IPDI------------ 228
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ RVGEVS K RG+HTTRHV L + GG LADTPGFNQP L + Q L FPE
Sbjct: 229 --NLRVGEVSGKLARGRHTTRHVELFEMPKGGLLADTPGFNQPD-LDCSPQELIHYFPEA 285
>gi|218437560|ref|YP_002375889.1| ribosome-associated GTPase [Cyanothece sp. PCC 7424]
gi|218170288|gb|ACK69021.1| ribosome small subunit-dependent GTPase A [Cyanothece sp. PCC 7424]
Length = 380
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 150/240 (62%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI + V+VGD+V++ +D+ D+RG I V R TE+ PPVAN D ++L+
Sbjct: 52 LLCTRRTRLKKIGQTVMVGDRVLIEEVDFTDKRGAIAQVLPRKTELQRPPVANADQIVLV 111
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++P L+P+ L+RFLV+AEST + L L LNK +L+ ++ W+ L WGY+P+ S
Sbjct: 112 FALEEPSLDPWQLSRFLVKAESTSLELCLCLNKADLISQQQQQQWQEVLQQWGYDPVLIS 171
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V + GL LL+RL+D+ +++ GPSGVGKSSLIN L +
Sbjct: 172 VVKQDGLKPLLERLKDKISILAGPSGVGKSSLINRLIPAV-------------------- 211
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+QRV +VS K RG+HTTRHV L L GGG LADTPGFNQP L LA FPE
Sbjct: 212 --EQRVNQVSGKLQRGRHTTRHVELFELPGGGLLADTPGFNQPE-LDSEPTELAFYFPEA 268
>gi|425468962|ref|ZP_18847936.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9701]
gi|389884378|emb|CCI35319.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9701]
Length = 358
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 151/243 (62%), Gaps = 23/243 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V +++ D++G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEVNFADQQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEAEQIELWGDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVQLFALPNRGLLADSPGFNQPD-INCSPEQLTFYF 247
Query: 261 PEV 263
PEV
Sbjct: 248 PEV 250
>gi|354566831|ref|ZP_08986002.1| ribosome biogenesis GTPase RsgA [Fischerella sp. JSC-11]
gi|353544490|gb|EHC13944.1| ribosome biogenesis GTPase RsgA [Fischerella sp. JSC-11]
Length = 369
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 148/254 (58%), Gaps = 26/254 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R LKKI ++V+VGD+V+V DW +RG I +V R ++ P +ANV+ +LL+F+
Sbjct: 55 CTRRTRLKKIGQQVMVGDRVLVEEPDWTGQRGAIADVLPRKNQLDRPAIANVNQILLVFA 114
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P LEP+ L+RFL++AESTG+ + L LNK +L+ + L WGYEP+F SV
Sbjct: 115 VADPPLEPYQLSRFLIKAESTGLDVVLCLNKSDLITTQQQAEINQHLTNWGYEPIFISVY 174
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D L L+D TV+ GPSGVGKSSLINAL + N
Sbjct: 175 KSINIDDLANLLKDNITVLAGPSGVGKSSLINAL-----------IPNI----------- 212
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV-- 263
+ RVGE+S K RG+HTTRHV L L GG LADTPGFNQP L T + LA FPE
Sbjct: 213 NLRVGEISGKLARGRHTTRHVELFDLPNGGLLADTPGFNQPD-LDCTPEELAAYFPEARQ 271
Query: 264 -CAVGLLYMIHMLH 276
AV + LH
Sbjct: 272 RLAVARCRFSNCLH 285
>gi|427731680|ref|YP_007077917.1| ribosome small subunit-dependent GTPase A [Nostoc sp. PCC 7524]
gi|427367599|gb|AFY50320.1| ribosome small subunit-dependent GTPase A [Nostoc sp. PCC 7524]
Length = 372
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 145/238 (60%), Gaps = 23/238 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R LKKI ++V+VGD+VVV DW RG I V R T++ PP+AN + ++L+F+
Sbjct: 59 CTRRTRLKKIGQQVMVGDRVVVEEPDWSGGRGAIAEVLSRQTQLDRPPIANANQIMLVFA 118
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P LEPF L+RFL++AESTG+ + L LNK +LV + RL WGY+PLF SV+
Sbjct: 119 VADPPLEPFQLSRFLIKAESTGLDVVLCLNKSDLVSPDEKQEISDRLLAWGYQPLFISVK 178
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+++ +D + + L + TV+ GPSGVGKSSLINAL D+
Sbjct: 179 NEINIDQVAKDLNHKITVVAGPSGVGKSSLINAL--------IPDI-------------- 216
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ RVGEVS K RG+HTTRHV L L GG LADTPGFNQP + + + L FPE
Sbjct: 217 NLRVGEVSGKLARGRHTTRHVELFELPSGGLLADTPGFNQPD-VDCSPEELVYYFPEA 273
>gi|440756226|ref|ZP_20935427.1| ribosome small subunit-dependent GTPase A [Microcystis aeruginosa
TAIHU98]
gi|440173448|gb|ELP52906.1| ribosome small subunit-dependent GTPase A [Microcystis aeruginosa
TAIHU98]
Length = 358
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 150/243 (61%), Gaps = 23/243 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ DR+G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFDDRQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEIWSDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPD-INCSPEQLTFYF 247
Query: 261 PEV 263
PEV
Sbjct: 248 PEV 250
>gi|425438232|ref|ZP_18818637.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9432]
gi|389676615|emb|CCH94373.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9432]
Length = 358
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 150/243 (61%), Gaps = 23/243 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ DR+G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFDDRQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEIWSDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPD-INCSPEQLTFYF 247
Query: 261 PEV 263
PEV
Sbjct: 248 PEV 250
>gi|425460796|ref|ZP_18840277.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9808]
gi|389826472|emb|CCI22975.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9808]
Length = 358
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 150/243 (61%), Gaps = 23/243 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ DR+G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFDDRQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEIWSDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPD-INCSPEQLTFYF 247
Query: 261 PEV 263
PEV
Sbjct: 248 PEV 250
>gi|425440032|ref|ZP_18820341.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9717]
gi|389719608|emb|CCH96572.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9717]
Length = 358
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 151/243 (62%), Gaps = 23/243 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ DR+G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFDDRQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN+L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINSL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPD-INCSPEQLTFYF 247
Query: 261 PEV 263
PEV
Sbjct: 248 PEV 250
>gi|425452513|ref|ZP_18832330.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 7941]
gi|389765669|emb|CCI08507.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 7941]
Length = 358
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 150/243 (61%), Gaps = 23/243 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ DR+G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFDDRQGAIAEVIPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEAEQIELWGDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPD-INCSPEQLTFYF 247
Query: 261 PEV 263
PEV
Sbjct: 248 PEV 250
>gi|282899272|ref|ZP_06307243.1| GTPase EngC [Cylindrospermopsis raciborskii CS-505]
gi|281195841|gb|EFA70767.1| GTPase EngC [Cylindrospermopsis raciborskii CS-505]
Length = 352
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/239 (46%), Positives = 145/239 (60%), Gaps = 23/239 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V+V DW+ RG I +V R TE+ P +ANV+ +LL+
Sbjct: 36 LLCTRRTRLKKIGQQVMVGDQVLVEEPDWMGGRGAIADVLPRKTELDRPAIANVNQILLV 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP L+RFL++ ESTGI L L LNK +L+ E+ RL +WGY+P+F S
Sbjct: 96 FALADPPLEPVQLSRFLIKGESTGIDLRLCLNKCDLIKEDERRAISDRLESWGYKPIFLS 155
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V+ + ++ + L+++ TVI GPSGVGKSSLIN L P
Sbjct: 156 VQEGMNIEEAREYLKNKITVIAGPSGVGKSSLINQL--IPQG------------------ 195
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ RVG+VS K RG+HTTRHV L L GG LADTPGFNQP L + L FPE
Sbjct: 196 --NLRVGKVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-LGFAPEELIYYFPE 251
>gi|425463481|ref|ZP_18842816.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9809]
gi|389832217|emb|CCI24351.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9809]
Length = 358
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/245 (44%), Positives = 153/245 (62%), Gaps = 23/245 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ D++G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFGDQQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL +WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLASWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + +Q L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVQLFALPNRGLLADSPGFNQPDINCLPEQ-LTFYF 247
Query: 261 PEVCA 265
PEV A
Sbjct: 248 PEVRA 252
>gi|282897943|ref|ZP_06305938.1| GTPase EngC [Raphidiopsis brookii D9]
gi|281197087|gb|EFA71988.1| GTPase EngC [Raphidiopsis brookii D9]
Length = 352
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/239 (46%), Positives = 145/239 (60%), Gaps = 23/239 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V+V DW+ RG I +V R TE+ P +ANV+ +LL+
Sbjct: 36 LLCTRRTRLKKIGQQVMVGDQVLVEEPDWMGGRGAIADVLPRKTELDRPAIANVNQILLV 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP L+RFL++ ESTGI L L LNK +L+ E RL +WGY+P+F S
Sbjct: 96 FALADPPLEPVQLSRFLIKGESTGIDLRLCLNKCDLIQENERRAISDRLGSWGYKPIFLS 155
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V+ + ++ + L+++ TVI GPSGVGKSSLIN L P
Sbjct: 156 VQEGMNIEEAREYLKNKITVIAGPSGVGKSSLINQL--IPQG------------------ 195
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ RVG+VS K RG+HTTRHV L L GG LADTPGFNQP L + + L FPE
Sbjct: 196 --NLRVGKVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-LGFSPEELIYYFPE 251
>gi|209525539|ref|ZP_03274078.1| GTPase EngC [Arthrospira maxima CS-328]
gi|209494038|gb|EDZ94354.1| GTPase EngC [Arthrospira maxima CS-328]
Length = 406
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 154/301 (51%), Gaps = 70/301 (23%)
Query: 10 PSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEI 69
PS + + LLC RA LKKI ++V+VGD+VVV DW RG+I + R TE+
Sbjct: 28 PSGNGAGGEAKRMTLLCTCRARLKKIGQKVMVGDRVVVSCPDWQGGRGVISEILPRKTEL 87
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
P +AN DHLLL+F++ +P +P L+RFL++AESTG+ ++L NK +L+ + L W
Sbjct: 88 ARPSIANADHLLLVFAVAEPDPDPVTLSRFLLKAESTGLEVSLCFNKCDLLPPDSLRQWY 147
Query: 130 SRLHTWGYEPLFCSV----------------------ESKLGLD---------------- 151
R+ WGY+PL SV + GLD
Sbjct: 148 DRMRGWGYDPLMISVYHGVEYRFEGDRMETSPTLNLSSNSAGLDKPGFGESSPSLTRDGD 207
Query: 152 ---------SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SLL RLR +TT I GPSGVGKSSLIN L + H
Sbjct: 208 RNQVSGTANSLLDRLRLKTTAISGPSGVGKSSLINKLIPNSHL----------------- 250
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVGEVS K GRG+HTTRHV L L GG+LADTPGFNQP L+ L FPE
Sbjct: 251 -----RVGEVSGKLGRGRHTTRHVELFELHNGGFLADTPGFNQPE-LQCDPHQLGNYFPE 304
Query: 263 V 263
+
Sbjct: 305 I 305
>gi|423062151|ref|ZP_17050941.1| GTPase EngC [Arthrospira platensis C1]
gi|406716059|gb|EKD11210.1| GTPase EngC [Arthrospira platensis C1]
Length = 492
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 154/301 (51%), Gaps = 70/301 (23%)
Query: 10 PSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEI 69
PS + + LLC RA LKKI ++V+VGD+VVV DW RG+I + R TE+
Sbjct: 114 PSGNGAGGEAKRMTLLCTCRARLKKIGQKVMVGDRVVVSCPDWQGGRGVISEILPRKTEL 173
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
P +AN DHLLL+F++ +P +P L+RFL++AESTG+ ++L NK +L+ + L W
Sbjct: 174 ARPSIANADHLLLVFAVAEPDPDPVTLSRFLLKAESTGLEVSLCFNKCDLLPPDSLRQWY 233
Query: 130 SRLHTWGYEPLFCSV----------------------ESKLGLD---------------- 151
R+ WGY+PL SV + GLD
Sbjct: 234 DRMRGWGYDPLMISVYHGVEYRFEGDRMETSPTLNLSSNSAGLDKPGFGESSPSLTRDGD 293
Query: 152 ---------SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SLL RLR +TT I GPSGVGKSSLIN L + H
Sbjct: 294 RNQVSGTANSLLDRLRLKTTAISGPSGVGKSSLINKLIPNSHL----------------- 336
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVGEVS K GRG+HTTRHV L L GG+LADTPGFNQP L+ L FPE
Sbjct: 337 -----RVGEVSGKLGRGRHTTRHVELFELHNGGFLADTPGFNQPE-LQCDPHQLGNYFPE 390
Query: 263 V 263
+
Sbjct: 391 I 391
>gi|56752026|ref|YP_172727.1| ribosome-associated GTPase [Synechococcus elongatus PCC 6301]
gi|56686985|dbj|BAD80207.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 350
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/240 (47%), Positives = 147/240 (61%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L K +RV+VGD+V V DW +RG I +V RS+E+ P +ANVD +LL+
Sbjct: 32 LLCTRRTRLLKTGQRVMVGDRVWVEEPDWQGQRGAIASVEPRSSELDRPAIANVDQILLV 91
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P+LEP LTRFLV AESTGIP+ L L+K +LV + W+ RL WGY+PL+ S
Sbjct: 92 FAVAEPELEPLQLTRFLVTAESTGIPVQLCLSKCDLVTAGAIAAWQERLAQWGYQPLWLS 151
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
LL++L + TV+ GPSGVGKSSLIN L P L
Sbjct: 152 QNQPERWPLLLKQLIGRMTVVAGPSGVGKSSLINRLI----------------PDL---- 191
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ R +VS K GRG+HTTRHV L L GG LAD+PGFNQP L+ + + LAQ FPE+
Sbjct: 192 --ELRTAKVSGKLGRGRHTTRHVELFELPQGGLLADSPGFNQPELI-CSDRELAQYFPEI 248
>gi|443316736|ref|ZP_21046169.1| ribosome small subunit-dependent GTPase A [Leptolyngbya sp. PCC
6406]
gi|442783647|gb|ELR93554.1| ribosome small subunit-dependent GTPase A [Leptolyngbya sp. PCC
6406]
Length = 410
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 141/241 (58%), Gaps = 23/241 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC RA LKKI ++V+VGD V + DW RG I V R +++ PPVAN + +LL+
Sbjct: 78 LLCTRRARLKKIGQQVMVGDWVRIEEPDWEGGRGAIAAVAPRQSQLDRPPVANANQILLV 137
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FS+ +P L+P L+RFLV+AE+TGI + L LNK +LV V +W RL WGY + S
Sbjct: 138 FSLAEPDLDPHQLSRFLVQAETTGIEIALVLNKRDLVTASVAESWGERLQRWGYSAVVTS 197
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V+++ L LRD+ T+I GPSGVGKSSLIN L + H
Sbjct: 198 VQTQDPWLPLGDMLRDRVTIISGPSGVGKSSLINGLIPAAHL------------------ 239
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
R G VS K GRG+HTTRHV L L GG LADTPGFNQP + + L FPEV
Sbjct: 240 ----RTGTVSGKLGRGRHTTRHVELFELPTGGLLADTPGFNQPD-IHCAPEELGYYFPEV 294
Query: 264 C 264
C
Sbjct: 295 C 295
>gi|81300885|ref|YP_401093.1| ribosome-associated GTPase [Synechococcus elongatus PCC 7942]
gi|81169766|gb|ABB58106.1| GTPase EngC [Synechococcus elongatus PCC 7942]
Length = 350
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/240 (47%), Positives = 147/240 (61%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L K +RV+VGD+V V DW +RG I +V RS+E+ P +ANVD +LL+
Sbjct: 32 LLCTRRTRLLKTGQRVMVGDRVWVEEPDWQGQRGAIASVEPRSSELDRPAIANVDQILLV 91
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P+LEP LTRFLV AESTGIP+ L L+K +LV + W+ RL WGY+PL+ S
Sbjct: 92 FAVAEPELEPLQLTRFLVTAESTGIPVQLCLSKCDLVTAGAIAAWQERLAQWGYQPLWLS 151
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
LL++L + TV+ GPSGVGKSSLIN L P L
Sbjct: 152 QNQPERWPLLLKQLIGRMTVVAGPSGVGKSSLINRLI----------------PDL---- 191
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ R +VS K GRG+HTTRHV L L GG LAD+PGFNQP L+ + + LAQ FPE+
Sbjct: 192 --ELRTAKVSGKLGRGRHTTRHVELFELPQGGLLADSPGFNQPELI-CSDRELAQYFPEI 248
>gi|422301740|ref|ZP_16389105.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9806]
gi|389789110|emb|CCI14760.1| putative ribosome biogenesis GTPase RsgA [Microcystis aeruginosa
PCC 9806]
Length = 358
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 149/243 (61%), Gaps = 23/243 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ D++G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFADQQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEIWGDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG VS K +G+HTTRHV L L G LAD+PGFNQP + + + L F
Sbjct: 194 -----NQRVGGVSGKLQKGRHTTRHVELFALPNRGLLADSPGFNQPD-INCSPEQLTFYF 247
Query: 261 PEV 263
PEV
Sbjct: 248 PEV 250
>gi|376001961|ref|ZP_09779814.1| putative GTPase, EngC-like [Arthrospira sp. PCC 8005]
gi|375329672|emb|CCE15567.1| putative GTPase, EngC-like [Arthrospira sp. PCC 8005]
Length = 400
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 154/301 (51%), Gaps = 70/301 (23%)
Query: 10 PSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEI 69
PS + + LLC RA LKKI ++V+VGD+VVV DW RG+I + R TE+
Sbjct: 22 PSGNGAGGEAKRMTLLCTCRARLKKIGQKVMVGDRVVVSCPDWQGGRGVISEILPRKTEL 81
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
P +AN DHLLL+F++ +P +P L+RFL++AESTG+ ++L NK +L+ + L W
Sbjct: 82 ARPSIANADHLLLVFAVAEPDPDPVTLSRFLLKAESTGLEVSLCFNKCDLLPPDSLREWY 141
Query: 130 SRLHTWGYEPLFCSV----------------------ESKLGLD---------------- 151
R+ WGY+PL SV + GLD
Sbjct: 142 DRMRGWGYDPLMISVYHGVEYRFEGDRMETSPTLNLSSNSAGLDKPGFGESSPSLTRDGD 201
Query: 152 ---------SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SLL RLR +TT I GPSGVGKSSLIN L + H
Sbjct: 202 RNQVSGTANSLLDRLRLKTTAISGPSGVGKSSLINKLIPNSHL----------------- 244
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVGEVS K GRG+HTTRHV L L GG+LADTPGFNQP L+ L FPE
Sbjct: 245 -----RVGEVSGKLGRGRHTTRHVELFELHNGGFLADTPGFNQPE-LQCDPHQLGNYFPE 298
Query: 263 V 263
+
Sbjct: 299 I 299
>gi|186680672|ref|YP_001863868.1| ribosome-associated GTPase [Nostoc punctiforme PCC 73102]
gi|186463124|gb|ACC78925.1| ribosome small subunit-dependent GTPase A [Nostoc punctiforme PCC
73102]
Length = 366
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 144/240 (60%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+VVV DW RG I +V R +E+ P +ANV+ +LL+
Sbjct: 51 LLCTRRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIADVLPRHSELDRPAIANVNQILLV 110
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP+ L+RFL++AESTG+ + L LNK +L+ E RL WGY+P+F S
Sbjct: 111 FAVADPPLEPYQLSRFLIKAESTGLDVLLCLNKSDLISESEQQKVSDRLLGWGYQPIFIS 170
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V+ + D + L ++ TVI GPSGVGKSSLIN L D+A +
Sbjct: 171 VKDGINTDQSGRYLSNKITVIAGPSGVGKSSLINTL------IDSAKL------------ 212
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
RVGEVS K RG+HTTRH+ L L GG LADTPGFNQP + + L FPE
Sbjct: 213 ----RVGEVSGKLARGRHTTRHIELFELPSGGMLADTPGFNQPD-MDCIPEELIHYFPEA 267
>gi|166367683|ref|YP_001659956.1| ribosome-associated GTPase [Microcystis aeruginosa NIES-843]
gi|254766815|sp|B0JW21.1|RSGA_MICAN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|166090056|dbj|BAG04764.1| probable GTPase engC protein 1 [Microcystis aeruginosa NIES-843]
Length = 358
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/245 (44%), Positives = 150/245 (61%), Gaps = 23/245 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ D++G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFGDQQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVQLFALPNRGLLADSPGFNQPD-INCLPEELTFYF 247
Query: 261 PEVCA 265
PEV A
Sbjct: 248 PEVRA 252
>gi|440683833|ref|YP_007158628.1| ribosome biogenesis GTPase RsgA [Anabaena cylindrica PCC 7122]
gi|428680952|gb|AFZ59718.1| ribosome biogenesis GTPase RsgA [Anabaena cylindrica PCC 7122]
Length = 374
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 145/240 (60%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V+V DW RG I +V R +E+ P +ANV+ +LL+
Sbjct: 58 LLCTRRTRLKKIGQQVMVGDRVIVEEPDWSGGRGAIGDVLPRHSELDRPAIANVNQILLV 117
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP L+RFL++AESTG+ + L LNK +L+ RL WGY+PLF S
Sbjct: 118 FAVADPPLEPVQLSRFLIKAESTGVDVLLCLNKCDLISPLEKQQISDRLLAWGYQPLFIS 177
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V++++ +D + L ++ TVI GPSGVGKSSLIN L D+
Sbjct: 178 VQNQINIDHIANYLNNKITVIAGPSGVGKSSLINGL--------IPDI------------ 217
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ RVGEVS K RG+HTTRHV L + GG LADTPGFNQP L + + L FPE
Sbjct: 218 --NLRVGEVSGKLARGRHTTRHVELFEMPSGGLLADTPGFNQPD-LDCSPEELIYYFPEA 274
>gi|443479211|ref|ZP_21068838.1| ribosome biogenesis GTPase RsgA [Pseudanabaena biceps PCC 7429]
gi|443015315|gb|ELS30326.1| ribosome biogenesis GTPase RsgA [Pseudanabaena biceps PCC 7429]
Length = 357
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/241 (46%), Positives = 143/241 (59%), Gaps = 23/241 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
ELLC RA LKKI +++ VGD+V+V DW RRG I +V R + P VANVD +LL
Sbjct: 42 ELLCTRRARLKKIGQQICVGDRVIVEEPDWQGRRGAISDVSIRRNLLDRPTVANVDRILL 101
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+FS+ +P L+P L+RFLV+AEST + + L LNK +LV +++ W+ RL +WGYE +
Sbjct: 102 VFSLAEPSLDPHQLSRFLVKAESTQVEVLLCLNKRDLVSDQMWELWRDRLQSWGYEAIAI 161
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++ G+D L L+ TV+ G SGVGKSSLIN L
Sbjct: 162 STYTQQGIDQLATYLQTGVTVVAGLSGVGKSSLINLLIPDLQV----------------- 204
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVG VS + G G+HTTRHV L L GGYLADTPGF QP+ L VT LA FPE
Sbjct: 205 -----RVGVVSQRLGHGRHTTRHVELFALPAGGYLADTPGFMQPN-LTVTPPELADCFPE 258
Query: 263 V 263
Sbjct: 259 A 259
>gi|409994002|ref|ZP_11277125.1| GTPase RsgA [Arthrospira platensis str. Paraca]
gi|291567081|dbj|BAI89353.1| putative ribosome biogenesis GTPase RsgA [Arthrospira platensis
NIES-39]
gi|409935149|gb|EKN76690.1| GTPase RsgA [Arthrospira platensis str. Paraca]
Length = 406
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 153/301 (50%), Gaps = 70/301 (23%)
Query: 10 PSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEI 69
PS + + LLC RA LKKI ++V+VGD+VVV DW G+I + R TE+
Sbjct: 28 PSGNGAGGEAKPITLLCTCRARLKKIGQKVMVGDRVVVSCPDWQGGTGVISEILPRKTEL 87
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
P +AN DHLLL+F++ +P +P L+RFL++AESTG+ ++L NK +L+ + L W
Sbjct: 88 ARPSIANADHLLLVFAVAEPDPDPVTLSRFLLKAESTGLEVSLCFNKCDLLPPDSLREWY 147
Query: 130 SRLHTWGYEPLFCSV----------------------ESKLGLD---------------- 151
R+ WGY+PL SV + GLD
Sbjct: 148 DRMRGWGYDPLMISVYHGVEYRFEGDRMEISPTLNLSSNSAGLDKPGFGESSPSLTRDGD 207
Query: 152 ---------SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SLL RLR +TT I GPSGVGKSSLIN L + H
Sbjct: 208 RNLVSGTANSLLDRLRLKTTAISGPSGVGKSSLINKLIPNSHL----------------- 250
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVGEVS K GRG+HTTRHV L L GG+LADTPGFNQP L+ L FPE
Sbjct: 251 -----RVGEVSGKLGRGRHTTRHVELFELHNGGFLADTPGFNQPE-LQCDPHQLGNYFPE 304
Query: 263 V 263
+
Sbjct: 305 I 305
>gi|443320128|ref|ZP_21049250.1| ribosome small subunit-dependent GTPase A [Gloeocapsa sp. PCC
73106]
gi|442790148|gb|ELR99759.1| ribosome small subunit-dependent GTPase A [Gloeocapsa sp. PCC
73106]
Length = 358
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 145/248 (58%), Gaps = 25/248 (10%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
C D ELLC R LKKI ++ +VGDKV V D RG I + R + P +A
Sbjct: 25 CTDDK--ELLCTCRGRLKKIGQKAMVGDKVKVIEPAVRDGRGSIVEILPRHNLLSRPAIA 82
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW 135
NVDHLLLLF++ P LE + L+RFLV+AEST I L+L LNK +LV + W SR+ TW
Sbjct: 83 NVDHLLLLFALKDPPLEAWQLSRFLVKAESTQIKLSLCLNKADLVTDTERQDWHSRVQTW 142
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
GYEP+ SV S+LG+ L RL + T++ GPSGVGKS+L NAL P
Sbjct: 143 GYEPIIVSVTSQLGMSQLQARLDGKITILAGPSGVGKSTLTNAL--IPEV---------- 190
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
+QRV VS K G+HTTRHV L L G G++AD+PGFNQP L+ +
Sbjct: 191 ----------NQRVNTVSGKLHLGRHTTRHVELFSLPGSGFIADSPGFNQPD-LQSEPRE 239
Query: 256 LAQTFPEV 263
LA FPE+
Sbjct: 240 LALYFPEI 247
>gi|434391160|ref|YP_007126107.1| ribosome biogenesis GTPase RsgA [Gloeocapsa sp. PCC 7428]
gi|428263001|gb|AFZ28947.1| ribosome biogenesis GTPase RsgA [Gloeocapsa sp. PCC 7428]
Length = 362
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 141/240 (58%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC RA LKK+ ++V+VGD+V + DW RG I V R +++ PP+AN + +LL+
Sbjct: 47 LLCTRRARLKKLGQQVMVGDRVEIVEPDWAGGRGAIAGVLPRKSQLDRPPIANAEQILLV 106
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P LEP+ L+RFLV+AESTG+ + L NK +L+ E W+ RL WGY+P+ S
Sbjct: 107 FALAEPPLEPYQLSRFLVKAESTGLGVRLCFNKSDLLTLEQQQQWRDRLQQWGYQPVLIS 166
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ +G+ + L+ + + + GPSGVGKSSLINAL + H
Sbjct: 167 IRDGIGISEVRDLLKLRISAVAGPSGVGKSSLINALIPTVHL------------------ 208
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
R EVS K RG+HTTRHV L L GG LADTPGFNQP L LA FPE+
Sbjct: 209 ----RTNEVSGKLSRGRHTTRHVELFTLPDGGLLADTPGFNQPD-LTCYPHELANYFPEI 263
>gi|307153574|ref|YP_003888958.1| ribosome small subunit-dependent GTPase A [Cyanothece sp. PCC 7822]
gi|306983802|gb|ADN15683.1| ribosome small subunit-dependent GTPase A [Cyanothece sp. PCC 7822]
Length = 381
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/240 (46%), Positives = 147/240 (61%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V++ ID D RG I V R TE+ PPVAN + ++L+
Sbjct: 53 LLCTRRTRLKKIGQKVMVGDQVLIEEIDLADGRGAIAQVLPRKTELQRPPVANAEQIVLV 112
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++P L+P+ L+RFLV+AEST + + L LNK +L+ W+ RL WGYEP+ S
Sbjct: 113 FALEEPSLDPWQLSRFLVKAESTSLEICLCLNKADLITPHQQQQWQERLQQWGYEPVLIS 172
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V GL+ LL+RL+ + +++ GPSGVGKSSLIN L DV
Sbjct: 173 VAKNTGLEQLLKRLKGKISILAGPSGVGKSSLINKL--------IPDV------------ 212
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+QRV +VS K RG+HTTRHV L L GG LADTPGFNQP L LA FPE
Sbjct: 213 --EQRVNQVSGKLQRGRHTTRHVELFQLPLGGLLADTPGFNQPD-LDCDPTELAFYFPEA 269
>gi|298491004|ref|YP_003721181.1| ribosome small subunit-dependent GTPase A ['Nostoc azollae' 0708]
gi|298232922|gb|ADI64058.1| ribosome small subunit-dependent GTPase A ['Nostoc azollae' 0708]
Length = 370
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 143/240 (59%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+V+V DW RG I V R +E+ P +ANV +LL+
Sbjct: 54 LLCTRRTRLKKIGQQVMVGDRVIVEEPDWAGGRGAIAEVLPRQSELDRPAIANVHQILLV 113
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P LEP L+RFL++AESTG+ + L LNK +L+ + L WGY+PLF S
Sbjct: 114 FAVADPPLEPVQLSRFLIKAESTGVDVLLCLNKCDLISPQEQQEISDHLFAWGYKPLFIS 173
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V++++ + + + L ++ TVI GPSGVGKSSLIN L DV
Sbjct: 174 VQNEINIHQVDEYLSNKVTVIAGPSGVGKSSLINGL--------IPDV------------ 213
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ RVGEVS K RG+HTTRHV L + GG LADTPGFNQP L + + L FPE
Sbjct: 214 --NLRVGEVSGKLARGRHTTRHVELFEMRSGGLLADTPGFNQPD-LDSSPEELIYYFPEA 270
>gi|303291105|ref|XP_003064839.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453865|gb|EEH51173.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 330
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 145/240 (60%), Gaps = 20/240 (8%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLCVVRALLKKIK+RVLVGD V V +IDWVD R ++E+V RS+ +LDPPVANVDH LL+
Sbjct: 1 LLCVVRALLKKIKQRVLVGDGVDVNTIDWVDGRAVVEHVHARSSTLLDPPVANVDHALLV 60
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++P LEP LTRFLV E T +P TL LNK +LV E W +RL E
Sbjct: 61 FALERPPLEPKQLTRFLVSMEHTNVPFTLVLNKCDLVSAEARADWDARLEQAQEEEEGGG 120
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ G ++ L + TV+ GPSGVGKSSLIN LR+ ++A
Sbjct: 121 GGDEEGTNA--GDLNEGVTVLAGPSGVGKSSLINRLRAGSALAEALAAAG---------- 168
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ GKHTTRHV+LLPL GG LADTPGF PSL +T +L + FPE
Sbjct: 169 --------AMGGADGGKHTTRHVTLLPLRSGGLLADTPGFGYPSLQTLTPTTLGRCFPEA 220
>gi|428298493|ref|YP_007136799.1| ribosome biogenesis GTPase RsgA [Calothrix sp. PCC 6303]
gi|428235037|gb|AFZ00827.1| ribosome biogenesis GTPase RsgA [Calothrix sp. PCC 6303]
Length = 359
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 140/247 (56%), Gaps = 23/247 (9%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
ND LLC R LKKI ++V+VGD+V+V DW G I V RS+ + P +AN
Sbjct: 35 NDTVATTLLCTRRTRLKKIGQQVMVGDRVIVEEPDWTGNSGAIAEVLPRSSTLDRPAIAN 94
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
V+ +LL+F++ P LEP+ L+RFL +AEST + + L NK +L+ + + R+ WG
Sbjct: 95 VNQILLVFAVADPPLEPYQLSRFLTKAESTYVDVKLCFNKCDLISSDEQSEIAERIGNWG 154
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+P+F SV + L SL + L +TTV+ G SGVGKSSLIN L + H
Sbjct: 155 YKPIFFSVYKSINLLSLAECLNGKTTVLAGASGVGKSSLINTLIPNAHL----------- 203
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
RVGEVS K RG+HTTRHV L L GG LADTPGFNQP L + L
Sbjct: 204 -----------RVGEVSGKLSRGRHTTRHVELFELPNGGLLADTPGFNQPD-LDCLPEEL 251
Query: 257 AQTFPEV 263
FPE
Sbjct: 252 IHYFPEA 258
>gi|254422162|ref|ZP_05035880.1| ribosome small subunit-dependent GTPase A, putative [Synechococcus
sp. PCC 7335]
gi|196189651|gb|EDX84615.1| ribosome small subunit-dependent GTPase A, putative [Synechococcus
sp. PCC 7335]
Length = 375
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 145/241 (60%), Gaps = 24/241 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC+ R LLKK+ ++++VGD+V V DW RRG I +V R T + PP+ANVD +LL+
Sbjct: 43 LLCIRRGLLKKLGQQIMVGDRVTVEEPDWQGRRGAIASVHPRQTFLDRPPIANVDRVLLV 102
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+ + L+RFL++AE TG+ +TL LNK +LV + W+ RL WGY PL S
Sbjct: 103 FAIAEPNLDIYQLSRFLIKAELTGLGITLCLNKCDLVSRDTKVRWQKRLLEWGYMPLMVS 162
Query: 144 VESKLGL-DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ L +LL L Q TV+ GPSGVGKSSL N L +
Sbjct: 163 ILDVAELPAALLTVLEGQITVLAGPSGVGKSSLTNRLIPA-------------------- 202
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++ RV VS K G+HTTRHV L L GGYLADTPGFNQP ++ T ++L FPE
Sbjct: 203 --QNLRVNAVSGKLSLGRHTTRHVELYELPKGGYLADTPGFNQPDIV-TTAEALGSLFPE 259
Query: 263 V 263
+
Sbjct: 260 I 260
>gi|428317432|ref|YP_007115314.1| ribosome biogenesis GTPase RsgA [Oscillatoria nigro-viridis PCC
7112]
gi|428241112|gb|AFZ06898.1| ribosome biogenesis GTPase RsgA [Oscillatoria nigro-viridis PCC
7112]
Length = 416
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 115/278 (41%), Positives = 148/278 (53%), Gaps = 43/278 (15%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+VVV DW DRRG I VF R TE+ PPVAN D +LL+
Sbjct: 43 LLCTRRTRLKKIGQQVMVGDRVVVDEPDWTDRRGAISEVFPRQTELNRPPVANADRILLV 102
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P +LTRFLV+AESTG+ ++L LNK +LV L W+ RL WGYEP+F S
Sbjct: 103 FALAEPDLDPASLTRFLVKAESTGLEVSLCLNKCDLVTPHELEQWRDRLSGWGYEPMFIS 162
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS-DAADVDNWFEPI---- 198
V S +G +++ V S L+ + +S D V N +P+
Sbjct: 163 VRSSVGFQEAAANGQNE----VSASEPAFHDLVEKIEPYKLSSEDNPQVSNSVKPLHPLK 218
Query: 199 --------------------------LGSKWFEDQ-------RVGEVSTKSGRGKHTTRH 225
+G +Q RV VS K GRG+HTTRH
Sbjct: 219 PVPSPLPNFLLGHLQGKITVICGPSGVGKSSLINQLIPALNLRVNAVSGKLGRGRHTTRH 278
Query: 226 VSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
V L L GGG LADTPGFNQP+ L+ LA FPE
Sbjct: 279 VELFELPGGGLLADTPGFNQPA-LECDPSELAAYFPEA 315
>gi|284928751|ref|YP_003421273.1| ribosome small subunit-dependent GTPase A [cyanobacterium UCYN-A]
gi|284809210|gb|ADB94915.1| ribosome small subunit-dependent GTPase A [cyanobacterium UCYN-A]
Length = 363
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 140/240 (58%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI + V+VGD+V++ D RG+I +V R TE+ P VAN D +LLL
Sbjct: 46 LLCTRRERLKKIGQNVMVGDRVIIKKSSLQDLRGLIISVLPRKTELSRPKVANADQILLL 105
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F +P+LEP+ L+RFL++AEST IPL L LNK +L+ + WK RL WGY P S
Sbjct: 106 FPFKEPELEPWQLSRFLIKAESTLIPLVLCLNKADLIKPDEQKKWKMRLKKWGYTPHLIS 165
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ + G+ L L+++ T+ GPSG GKSSLIN L V N
Sbjct: 166 ILNIQGIQELYDCLQNKITIFAGPSGAGKSSLINKL-----------VPNI--------- 205
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+QRV +VS K +G+HTTRHV L L GG +ADTPGFNQ L+ + L FPEV
Sbjct: 206 --EQRVDKVSGKLRKGRHTTRHVELFRLPKGGLVADTPGFNQAD-LQCDPRKLINYFPEV 262
>gi|427711698|ref|YP_007060322.1| ribosome small subunit-dependent GTPase A [Synechococcus sp. PCC
6312]
gi|427375827|gb|AFY59779.1| ribosome small subunit-dependent GTPase A [Synechococcus sp. PCC
6312]
Length = 344
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 146/242 (60%), Gaps = 24/242 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+LLC+ R LKK ++VLVGD+VV+ DW +RGMI+ V R + P +ANV+ +LL
Sbjct: 38 QLLCLRRGKLKKQGQQVLVGDQVVISEPDWQSQRGMIDQVLPRDCALTRPAIANVNQILL 97
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLF 141
+F++ P+ +P+ ++RFLV AE++G+ +T+ L+K +LVD + W RL+ WGY E +
Sbjct: 98 VFALHDPEPDPWQVSRFLVTAEASGLEITVVLSKADLVDGAIHQAWIQRLNRWGYQEVIL 157
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S+ + LGL ++ L + TVI GPSGVGKSSLI L
Sbjct: 158 LSILTGLGLLAVQSLLNHKITVICGPSGVGKSSLIKQLIPE------------------- 198
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
++ R+G VS +GKHTTRH+ L PL GG LADTPGFNQP L+ + LA FP
Sbjct: 199 ---QEIRIGTVSEHWHKGKHTTRHIELFPLPTGGLLADTPGFNQPH-LEFSPSDLAACFP 254
Query: 262 EV 263
E+
Sbjct: 255 EI 256
>gi|302830077|ref|XP_002946605.1| hypothetical protein VOLCADRAFT_43862 [Volvox carteri f.
nagariensis]
gi|300268351|gb|EFJ52532.1| hypothetical protein VOLCADRAFT_43862 [Volvox carteri f.
nagariensis]
Length = 330
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 155/249 (62%), Gaps = 13/249 (5%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC +R+LL+K+++ V+VGD V V SIDW + RG++ V RS+ ++DP VANVDH+LL+
Sbjct: 1 LLCSIRSLLRKLRQDVVVGDVVRVSSIDWREGRGVVSEVLPRSSRLVDPNVANVDHVLLV 60
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++DQP E ++RFLV AE+ G+P +L LNK +LV EV+ ++ +WGYEPL S
Sbjct: 61 FALDQPPFEELQVSRFLVAAEAAGLPFSLVLNKADLVGREVVEKRVAQCRSWGYEPLVLS 120
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASD------AADVDNWFEP 197
E G+++ + +V+ GPSG GKSSLIN LR H +
Sbjct: 121 CEGGWGVEA------GRISVVAGPSGAGKSSLINFLRLGRHRPEQRIDAATGTPATAAAA 174
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
G VG VS K GRG HTT V+LL L+GGG+LADTPGF QP+L ++ L+
Sbjct: 175 EGGEGGLGFLAVGSVS-KIGRGMHTTTSVTLLQLAGGGWLADTPGFGQPALEDLSSTDLS 233
Query: 258 QTFPEVCAV 266
+ FPE+ A+
Sbjct: 234 RYFPELLAL 242
>gi|434386936|ref|YP_007097547.1| ribosome small subunit-dependent GTPase A [Chamaesiphon minutus PCC
6605]
gi|428017926|gb|AFY94020.1| ribosome small subunit-dependent GTPase A [Chamaesiphon minutus PCC
6605]
Length = 358
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 141/243 (58%), Gaps = 23/243 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G +LC RA L+KI +VGD+V + +DW +G++ +VF R + + PPVAN D +
Sbjct: 40 GKLILCTRRARLQKIGVSAIVGDRVTIDEVDWQSAKGVVTDVFPRHSLLDRPPVANADRI 99
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+ F L++FLV+AESTG+ ++L LNK +LV + W RL WGY+P+
Sbjct: 100 LLVFALAEPALDSFLLSKFLVKAESTGLQVSLCLNKSDLVTDMQRQEWCDRLSNWGYQPI 159
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
SVE+ +G+ L L Q TV G SGVGKSSL NAL +
Sbjct: 160 VISVETGVGVKELQIELDRQITVFAGHSGVGKSSLTNALIPDSNI--------------- 204
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
RV VS K RG+HTTRHV L + GG +ADTPGFNQP + T L + F
Sbjct: 205 -------RVARVSGKLSRGRHTTRHVQLFTMPTGGLIADTPGFNQPD-IACTPTELPRYF 256
Query: 261 PEV 263
PE+
Sbjct: 257 PEI 259
>gi|334120859|ref|ZP_08494936.1| ribosome biogenesis GTPase RsgA [Microcoleus vaginatus FGP-2]
gi|333455858|gb|EGK84498.1| ribosome biogenesis GTPase RsgA [Microcoleus vaginatus FGP-2]
Length = 416
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/280 (40%), Positives = 147/280 (52%), Gaps = 47/280 (16%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R LKKI ++V+VGD+VVV DW +RRG I VF R TE+ PPVAN D +LL+
Sbjct: 43 LLCTRRTRLKKIGQQVMVGDRVVVDEPDWTERRGAISEVFPRQTELNRPPVANADRILLV 102
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P L+P +LTRFLV+AESTG+ ++L LNK +LV + L W+ RL WGYEP+F S
Sbjct: 103 FALAEPDLDPASLTRFLVKAESTGLEVSLCLNKCDLVTPQELEQWRDRLSGWGYEPMFIS 162
Query: 144 VESKLGLDSLLQRLRDQTTVIVGP-------------SGVGKSSLINALR---------- 180
V S G+ +++ + P S L N+L+
Sbjct: 163 VRSGAGVQEAPATGQNEVSASEPPFHDLVENREPSMLSSEDNPQLPNSLKPLHPLNPVHS 222
Query: 181 -----------------SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
P + + N P L + RV VS K GRG+HTT
Sbjct: 223 PLPNLLLDHLQGKITVICGPSGVGKSSLINQLIPAL------NLRVNTVSGKLGRGRHTT 276
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
RHV L L GGG LADTPGFNQP+ L+ L + FPE
Sbjct: 277 RHVELFELPGGGLLADTPGFNQPA-LECDPSELGEYFPEA 315
>gi|428772027|ref|YP_007163815.1| ribosome small subunit-dependent GTPase A [Cyanobacterium stanieri
PCC 7202]
gi|428686306|gb|AFZ46166.1| ribosome small subunit-dependent GTPase A [Cyanobacterium stanieri
PCC 7202]
Length = 349
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 146/243 (60%), Gaps = 25/243 (10%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC LKKI + VLVGD++ V S ++ RG I +V R TE+ PP+AN D +
Sbjct: 26 GQTLLCTRPTRLKKIGQNVLVGDRIYVKSTEF--ERGAIASVTPRKTELQRPPIANADQI 83
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++++P L+P L+RFLV+AEST + L L LNK +L+ +E W+ +L WGYEP
Sbjct: 84 LLVFALEEPTLDPVQLSRFLVKAESTNLKLLLGLNKADLITQEKQKEWEEKLKLWGYEPY 143
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE+ G++ + L+++ T+ GPSGVGKSSL + L P L
Sbjct: 144 FFSVENNQGIEEIKTALKNKITIFAGPSGVGKSSLTSLLI----------------PQL- 186
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
D R+GEVS K +G+HTTRHV L + GGY+AD+PGFNQP Q+L F
Sbjct: 187 -----DIRIGEVSGKLQKGRHTTRHVELFEMPQGGYIADSPGFNQPD-FDCNSQNLINYF 240
Query: 261 PEV 263
PE
Sbjct: 241 PEA 243
>gi|332710101|ref|ZP_08430054.1| ribosome small subunit-dependent GTPase A [Moorea producens 3L]
gi|332351059|gb|EGJ30646.1| ribosome small subunit-dependent GTPase A [Moorea producens 3L]
Length = 375
Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 142/240 (59%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC RA LKKI ++V+VGD+V+V DW RG+I V R++++ PP+AN +L++
Sbjct: 59 LLCTRRARLKKIGQQVMVGDRVLVEEPDWAGGRGVIAEVLPRTSQLDRPPIANAQQILVV 118
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++P L+ + L+RFLV+AESTG + L LNK++LV ++ W+ RL WGY+P+ S
Sbjct: 119 FALEEPTLDAYQLSRFLVKAESTGFKVCLCLNKLDLVTQQQQQDWQQRLEAWGYQPVLIS 178
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V + L L L +V+ G SGVGKSSLIN L +
Sbjct: 179 VHNGTCLAQLTDLLSQTISVMAGLSGVGKSSLINYLIPATRV------------------ 220
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
RV V+ K GRG+HTTRHV L L GG+LADTPGFNQP L + + L FPE
Sbjct: 221 ----RVAAVTGKLGRGRHTTRHVELFELPKGGFLADTPGFNQPD-LTCSPEDLIYYFPEA 275
>gi|428770568|ref|YP_007162358.1| ribosome biogenesis GTPase RsgA [Cyanobacterium aponinum PCC 10605]
gi|428684847|gb|AFZ54314.1| ribosome biogenesis GTPase RsgA [Cyanobacterium aponinum PCC 10605]
Length = 357
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 144/242 (59%), Gaps = 25/242 (10%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC LKKI + V VGD+V+V S ++ RG I +V R TE+ PP+AN +LL+
Sbjct: 37 LLCTRPTRLKKIGQSVFVGDRVLVKSTEF--ERGAIASVLPRETELERPPIANAQQILLV 94
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++++P L+P L+RFLV+AEST + L L LNKV+L+ E W+ RL WGYEP F S
Sbjct: 95 FALEEPTLDPVQLSRFLVKAESTKLKLLLGLNKVDLICPEKQKAWQERLCAWGYEPYFFS 154
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
V++ G+ SL + L ++ T++ GPSGVGKSSL + L
Sbjct: 155 VQTSQGVPSLQKVLANKITILAGPSGVGKSSLTSLLIPEIEV------------------ 196
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
RVGEVS K +G+HTTRHV L L GGY+AD+PGFNQP + +SL FPE
Sbjct: 197 ----RVGEVSGKLQKGRHTTRHVELFELPSGGYIADSPGFNQPH-FDFSVESLVNYFPEA 251
Query: 264 CA 265
A
Sbjct: 252 RA 253
>gi|22298530|ref|NP_681777.1| ribosome-associated GTPase [Thermosynechococcus elongatus BP-1]
gi|38257591|sp|Q8DK79.1|RSGA_THEEB RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|22294710|dbj|BAC08539.1| tll0987 [Thermosynechococcus elongatus BP-1]
Length = 348
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 133/241 (55%), Gaps = 23/241 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
ELLCV RA LKK+ ++V VGD VVV DW +RG I + R ++ P +ANVD +LL
Sbjct: 29 ELLCVRRARLKKMGQQVCVGDWVVVSHPDWPGQRGAIAEILPRRNQLSRPAIANVDQILL 88
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
LF++ P + +TRFL+ AE + + + K +LV + W+ RL WGY
Sbjct: 89 LFALADPPADVHPITRFLLTAEGLNVEIQVVFTKADLVSPQEQQQWRDRLQQWGYRCHVL 148
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +L L ++ TV+ GPSGVGKSSLI L
Sbjct: 149 SLTQGIAWQALRPHLANKITVVCGPSGVGKSSLIRHLTPR-------------------- 188
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
ED RVG VS RG+HTTRHV L PL+ GG++ADTPGFNQP L +Q LA FPE
Sbjct: 189 --EDIRVGAVSDHWHRGRHTTRHVELFPLAEGGWIADTPGFNQPELPPDPRQ-LAAAFPE 245
Query: 263 V 263
+
Sbjct: 246 I 246
>gi|428219078|ref|YP_007103543.1| ribosome biogenesis GTPase RsgA [Pseudanabaena sp. PCC 7367]
gi|427990860|gb|AFY71115.1| ribosome biogenesis GTPase RsgA [Pseudanabaena sp. PCC 7367]
Length = 386
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 108/272 (39%), Positives = 143/272 (52%), Gaps = 51/272 (18%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+ELLC+ R+ LKKI +RV VGD+VVV S DW +RG I V R + PP+ANVD L
Sbjct: 38 LELLCIRRSRLKKIGQRVCVGDRVVVESPDWQGQRGAIGQVLSRRNLLARPPIANVDRAL 97
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
L+F++ P+ + + L+RFLV E+ G+ + LALNK +LV E TW RL +WGY P+
Sbjct: 98 LMFALSDPEPDAYQLSRFLVNIEAQGLEICLALNKSDLVSPEFTQTWCDRLKSWGYAPIV 157
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + ++ L + L TV+ GPSGVGKSSLIN L P L
Sbjct: 158 ISTSQQTNIEQLRRSLTQGITVVSGPSGVGKSSLINLLI----------------PDL-- 199
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLL---------------------------PL-SG 233
+ R +VS +SG G+HTTRHV L PL
Sbjct: 200 ----ELRTAQVSARSGHGRHTTRHVELFDLNDCNHNLNLNLNLTPANPNHSHRDQPLPQQ 255
Query: 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA 265
+ADTPGF QP++ + Q LA FPE+ A
Sbjct: 256 PSLIADTPGFTQPAIACSSIQ-LANCFPEIRA 286
>gi|86610357|ref|YP_479119.1| hypothetical protein CYB_2937 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558899|gb|ABD03856.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 342
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 141/251 (56%), Gaps = 31/251 (12%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVV----GSIDWVDRRGMIENVFQRSTEILDPPVA 75
T E+LC RA LKK ++V+VGD V V + D RG+IE + R T++ P +A
Sbjct: 48 TPAEILCTSRAKLKKTGQQVMVGDWVEVRLPPAAADLWPERGVIEAILPRRTQLPRPAIA 107
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW 135
N +L++ ++ +P EP AL+R LV+AE++ + + + LNK + VD EV TW RL W
Sbjct: 108 NATQVLVVVALAEPDPEPNALSRLLVQAEASQLRVQVVLNKCDCVDPEVATTWVERLQRW 167
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
GYEPL S ++ G+ L Q RDQ +V++GPSGVGKSSL+N L
Sbjct: 168 GYEPLLVSAHTQAGIPQLQQCCRDQISVVMGPSGVGKSSLLNRL---------------- 211
Query: 196 EPILGSKWFEDQRVG--EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ-PSLLKVT 252
D R+ VS + G G+HTTRHV L PL GG++AD+PGFN + V
Sbjct: 212 --------LPDVRLATQAVSRRLGHGRHTTRHVELFPLPEGGWIADSPGFNAGEGIPPVH 263
Query: 253 KQSLAQTFPEV 263
L + FPEV
Sbjct: 264 PLQLIRCFPEV 274
>gi|318042991|ref|ZP_07974947.1| ribosome-associated GTPase YjeQ [Synechococcus sp. CB0101]
Length = 337
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 145/261 (55%), Gaps = 28/261 (10%)
Query: 21 GVE-LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79
G+E LLCV R L K +++ VGD+V + IDW + RG + + RS+ + P VAN
Sbjct: 26 GIEHLLCVRRTRLGKTGQQICVGDRVQIDGIDWPEGRGAVAALEPRSSLLERPAVANCSR 85
Query: 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEP 139
+++ +++QP+L+P LTRFL+ AE TG+ + L L K +L+ E W+ RL WGY+P
Sbjct: 86 VVVAVALEQPQLDPLQLTRFLLTAERTGVAVELVLTKADLLTAEQQQAWRERLGGWGYDP 145
Query: 140 LFCSVESKLGLDSLLQRLRDQ-TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
L S + G+ L +RL V+ GPSGVGKSSLINAL P
Sbjct: 146 LLVSAQQGEGISELRERLSAPGIAVLCGPSGVGKSSLINAL----------------VPE 189
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
L RV VS + RG+HTTRHV L PL+G LADTPGFN+P L + + L
Sbjct: 190 LAL------RVSAVSGRLQRGRHTTRHVELFPLAGAALLADTPGFNRPDLPQEPAE-LGP 242
Query: 259 TFPEV---CAVGLLYMIHMLH 276
FPE+ A G+ + LH
Sbjct: 243 LFPEIRQRLAEGVCRFKNCLH 263
>gi|86605496|ref|YP_474259.1| ribosome small subunit-dependent GTPase A [Synechococcus sp.
JA-3-3Ab]
gi|86554038|gb|ABC98996.1| ribosome small subunit-dependent GTPase A [Synechococcus sp.
JA-3-3Ab]
Length = 363
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 141/247 (57%), Gaps = 27/247 (10%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVD----RRGMIENVFQRSTEILDPPVANV 77
ELLC RA LKK+ + V+VGD V V D RG IE + R T++ P +AN+
Sbjct: 55 AELLCTARAKLKKMGQSVMVGDWVEVSLPPAADSLWPERGAIEAILPRRTQLPRPAIANI 114
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
+L++ ++ +P+ EP AL+R LV+AE++ + + + NK + V+ V +W+ RL WGY
Sbjct: 115 TQVLVVMALAEPEPEPNALSRLLVQAEASHLRVQVVFNKCDCVEAAVAESWRQRLQRWGY 174
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
EPL S ++ G+ L +R RDQ +V+ GPSGVGKSSL+N L + + A
Sbjct: 175 EPLLVSALTEAGIPELRRRCRDQISVVAGPSGVGKSSLLNRLLPAVQLTTQA-------- 226
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ-PSLLKVTKQSL 256
VS K +G+HTTRHV L PL GG++AD+PGFN + V+ Q L
Sbjct: 227 --------------VSEKLRQGRHTTRHVELFPLPEGGWIADSPGFNAGEGIPPVSPQQL 272
Query: 257 AQTFPEV 263
+ FPEV
Sbjct: 273 IRCFPEV 279
>gi|16332059|ref|NP_442787.1| ribosome-associated GTPase [Synechocystis sp. PCC 6803]
gi|383323802|ref|YP_005384656.1| hypothetical protein SYNGTI_2894 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383326971|ref|YP_005387825.1| hypothetical protein SYNPCCP_2893 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383492855|ref|YP_005410532.1| hypothetical protein SYNPCCN_2893 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384438123|ref|YP_005652848.1| hypothetical protein SYNGTS_2895 [Synechocystis sp. PCC 6803]
gi|451816211|ref|YP_007452663.1| hypothetical protein MYO_129230 [Synechocystis sp. PCC 6803]
gi|1723178|sp|P52640.1|RSGA_SYNY3 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|1001369|dbj|BAA10858.1| sll0898 [Synechocystis sp. PCC 6803]
gi|339275156|dbj|BAK51643.1| hypothetical protein SYNGTS_2895 [Synechocystis sp. PCC 6803]
gi|359273122|dbj|BAL30641.1| hypothetical protein SYNGTI_2894 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359276292|dbj|BAL33810.1| hypothetical protein SYNPCCN_2893 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359279462|dbj|BAL36979.1| hypothetical protein SYNPCCP_2893 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407960303|dbj|BAM53543.1| ribosome-associated GTPase [Synechocystis sp. PCC 6803]
gi|451782180|gb|AGF53149.1| hypothetical protein MYO_129230 [Synechocystis sp. PCC 6803]
Length = 369
Score = 173 bits (438), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 143/260 (55%), Gaps = 39/260 (15%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVV--------------GSIDWVDRR--GMIENVF 63
T LLC R LKK+ ++V+VGD+V V + V G I V+
Sbjct: 26 TSQPLLCTRRTRLKKVGQKVMVGDQVRVELPPSLLLHGRSNTAPVPMVAEGDLGAIAKVY 85
Query: 64 QRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
R T + PPVAN + + L+F++ P LE + L+RFLV+AE+TG+ ++L NK +LV E
Sbjct: 86 PRRTVLERPPVANAEQICLVFALTDPPLEEWQLSRFLVQAEATGLEISLCFNKQDLVQET 145
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
+ W RL WGY P+ SVE++ G++ L ++LR + +++ GPSGVGKSSLIN L
Sbjct: 146 DVKFWGDRLAAWGYAPIIISVENRWGVEKLQEKLRSRISLMAGPSGVGKSSLINLL---- 201
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
+ G +Q+V VS K +G+HTTRHV L L GG LADTPGF
Sbjct: 202 --------------VPGV----EQQVKNVSGKLRKGRHTTRHVELFDLPHGGLLADTPGF 243
Query: 244 NQPSLLKVTKQSLAQTFPEV 263
NQP L V L FPE
Sbjct: 244 NQPD-LAVEPAQLIHLFPEA 262
>gi|428222562|ref|YP_007106732.1| ribosome small subunit-dependent GTPase A [Synechococcus sp. PCC
7502]
gi|427995902|gb|AFY74597.1| ribosome small subunit-dependent GTPase A [Synechococcus sp. PCC
7502]
Length = 345
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 131/242 (54%), Gaps = 23/242 (9%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
ELLC+ RA LKK + V VGD++ V DW RG I VF R + P VANVD ++
Sbjct: 29 AELLCIRRARLKKTGQAVYVGDRIEVEEPDWQGARGAISGVFPRRNLLERPMVANVDRVV 88
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
L F++ +P+++P+ L+RFLV S + + L K +LV E W RL WGY+PL
Sbjct: 89 LAFALAEPEIDPYQLSRFLVNLASQDLEVLLCFTKRDLVTVEFWQAWCDRLVGWGYKPLA 148
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
SV + GL+ L Q L + TV+ G SGVGKSSLIN L + +
Sbjct: 149 VSVNTGEGLEELRQYLSEGVTVVTGQSGVGKSSLINFLIPNLNI---------------- 192
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
RV VS K G G+HTTRHV L P+ G LADTPGF QP+ L L FP
Sbjct: 193 ------RVHGVSLKLGTGRHTTRHVELFPIGDRGLLADTPGFTQPT-LHCDPLGLIDCFP 245
Query: 262 EV 263
EV
Sbjct: 246 EV 247
>gi|412992782|emb|CCO18762.1| ribosome-associated GTPase [Bathycoccus prasinos]
Length = 608
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 159/296 (53%), Gaps = 54/296 (18%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGS----IDWVDRRGMIENVFQRSTEILDP-PVAN 76
VELLC RALLKK+K++VLVGD V + + IDWV G I ++ +R E + +AN
Sbjct: 191 VELLCNCRALLKKMKQKVLVGDIVTLDAEKSGIDWVQGSGTIYDIEKRKNEGGNNLAIAN 250
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
VD LL FS+ QP LE LTRFLV E +P L NK +L++EE + W+ ++ WG
Sbjct: 251 VDVTLLTFSLSQPPLEEKQLTRFLVAFEYARVPFHLVFNKKDLIEEERVEEWREKMRRWG 310
Query: 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADV---- 191
Y+P F SV + G+D +++ + +T + GPSGVGKSSLIN LR++ A V
Sbjct: 311 YDPKFVSVATGDGIDEIVKVIGSGKTVALAGPSGVGKSSLINRLRATSALESALSVEKRQ 370
Query: 192 -----------DNWFEPILG---------------------SKWFEDQR----------- 208
D+ E G S+ E+++
Sbjct: 371 QNDYDEDRNRKDSSEEGEEGKITFVTDLDVEGGGGGKLKKGSRSVENEKAREILESADLQ 430
Query: 209 -VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
V +VS +SGRGKHTTRHVSLL + GG LADTPGF PSL + + +A FPE+
Sbjct: 431 SVKQVSARSGRGKHTTRHVSLLRMKGGNLLADTPGFGYPSLESMVVKDVALCFPEI 486
>gi|87301573|ref|ZP_01084413.1| GTPase EngC [Synechococcus sp. WH 5701]
gi|87283790|gb|EAQ75744.1| GTPase EngC [Synechococcus sp. WH 5701]
Length = 333
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 140/245 (57%), Gaps = 24/245 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+LLC R+ L + R+ VGD+V + IDW R + ++ R++ + PPVAN D +++
Sbjct: 42 QLLCTRRSRLGQAGERIHVGDRVGLEGIDWPAGRAAVGDLLPRTSLLGRPPVANCDRIVV 101
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+ +M P +P L+RFL+ AE +G P+ + +K++LV + L W+ RL +WGY+P+
Sbjct: 102 VIAMADPVPDPEQLSRFLLTAEHSGQPVQVVFSKLDLVPPDQLERWRQRLRSWGYDPIAV 161
Query: 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S S GL SL +RL + +V+ GPSGVGKSSL+NAL P L
Sbjct: 162 STASGEGLASLKERLAQPGISVVCGPSGVGKSSLLNAL----------------VPALA- 204
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
RVG VS + RG+HTTRHV L PL+ G +ADTPGFN+P L L FP
Sbjct: 205 -----LRVGTVSGRLRRGRHTTRHVELFPLAPGALIADTPGFNRPE-LPSDPAVLPALFP 258
Query: 262 EVCAV 266
E+ A
Sbjct: 259 EIAAA 263
>gi|307102441|gb|EFN50716.1| hypothetical protein CHLNCDRAFT_142572 [Chlorella variabilis]
Length = 597
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 111/157 (70%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLCVVRALLKK++R VLVGD+V V IDW D RGM+E V R++++ +P VANVDH+LL+
Sbjct: 132 LLCVVRALLKKMRREVLVGDRVRVVGIDWADGRGMVEEVLPRTSQLSEPAVANVDHVLLV 191
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FS P +P TR+L+ AE+ +P+T+A+NK +L+ E + ++ +WGY + S
Sbjct: 192 FSAALPAFQPSPATRYLLSAEAAWLPVTVAVNKADLLPAEEVQAVVDQVASWGYRGVAVS 251
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
V S GL L+Q LR + TV+ GPSG GKSS+INALR
Sbjct: 252 VVSGQGLQELMQVLRGRVTVVAGPSGAGKSSIINALR 288
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 42/91 (46%), Gaps = 32/91 (35%)
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLS-------------------------------- 232
E Q VG+VS + GRGKHTTR+V+LL L
Sbjct: 398 ELQAVGQVSQRIGRGKHTTRNVTLLELEGGGGVDGMNGGSSSSSTGSSGGSGSGGSGVSG 457
Query: 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
GGG + DTPGFNQP L + L Q FPE+
Sbjct: 458 GGGLVVDTPGFNQPDLADMPATDLWQHFPEI 488
>gi|194476885|ref|YP_002049064.1| GTPase EngC [Paulinella chromatophora]
gi|171191892|gb|ACB42854.1| GTPase EngC [Paulinella chromatophora]
Length = 312
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 135/242 (55%), Gaps = 24/242 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
ELLC R L + R+ VGD+V V SIDW RR ++ ++ RS+ + P VAN L+
Sbjct: 35 ELLCTCRTRLTQRGERICVGDQVEVESIDWKQRRAVVVSIGPRSSILKRPMVANCTRTLV 94
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+ ++++P L P L+RFL+ AE+ +P+ + NK +LV ++ W+ R++ WGY
Sbjct: 95 VVTLNEPNLNPDQLSRFLLTAEAADLPIDVVFNKSDLVTFAIIQQWQKRVYKWGYASFAI 154
Query: 143 SVESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL L + L+ + +VI GPSGVGKSSLIN+L P L
Sbjct: 155 SSRTGEGLHKLRKHLKTSSLSVICGPSGVGKSSLINSL----------------IPKLNL 198
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
K VG VS + RG+HTTRHV L P+ +ADTPGFN+P L QSL FP
Sbjct: 199 K------VGSVSGRLQRGRHTTRHVELFPIEPNAMIADTPGFNRPDLPD-EPQSLGWLFP 251
Query: 262 EV 263
E+
Sbjct: 252 EI 253
>gi|317968399|ref|ZP_07969789.1| GTPase engC [Synechococcus sp. CB0205]
Length = 334
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 136/242 (56%), Gaps = 24/242 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+LLCV R L K +++ VGD+V V IDW + R I V RS+ + P VAN +++
Sbjct: 28 QLLCVRRTRLGKTGQQICVGDRVEVEGIDWPEARAAIAAVAPRSSLLERPAVANCSRVVV 87
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
++ QP+L+P LTRFL+ AE TG+ + L L K +L+ L W+ RL WGY P
Sbjct: 88 AAALAQPELDPLQLTRFLLTAERTGVAVELVLTKADLLSALELEQWRERLTAWGYVPQLV 147
Query: 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S +S LGL +L +RL + +V+ GPSGVGKSSLINAL P L
Sbjct: 148 SSQSGLGLAALRERLAQPGVSVLCGPSGVGKSSLINALL----------------PQL-- 189
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
RV VS + RG+HTTRHV L P+ G LAD+PGFN+PS L L FP
Sbjct: 190 ----RLRVSAVSGRLQRGRHTTRHVELFPVEPGALLADSPGFNRPS-LPAEPTELGSLFP 244
Query: 262 EV 263
E+
Sbjct: 245 EI 246
>gi|148241123|ref|YP_001226280.1| GTPase engC [Synechococcus sp. RCC307]
gi|147849433|emb|CAK26927.1| Probable GTPase engC [Synechococcus sp. RCC307]
Length = 288
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 131/240 (54%), Gaps = 23/240 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC RA L +V+VGD+V V DW++ R + ++ R ++ P +ANVD +L++
Sbjct: 32 LLCTRRARLAHGGLKVMVGDRVGVEGCDWIEGRAAVGSLEPRRNQLQRPALANVDQVLVV 91
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++ QP ++P +L+RFL+ AE+ G + L+K +LV ++ W RL WGY+ L S
Sbjct: 92 MALAQPAIDPESLSRFLLSAETAGAEVIPVLSKADLVSDQQQQQWLDRLVGWGYQALAIS 151
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
GL +L RL V+ GPSGVGKSSL+NAL AA
Sbjct: 152 RHDPAGLAALEDRLSRGVAVLCGPSGVGKSSLLNALVPELQLRTAA-------------- 197
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
VS K RG+HTTRHV L L GG LADTPGFN+P L + +AQ FPE+
Sbjct: 198 --------VSGKLQRGRHTTRHVELHDLPAGGLLADTPGFNRPE-LPADPELVAQLFPEI 248
>gi|148238361|ref|YP_001223748.1| GTPase engC [Synechococcus sp. WH 7803]
gi|147846900|emb|CAK22451.1| Probable GTPase engC [Synechococcus sp. WH 7803]
Length = 302
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 132/245 (53%), Gaps = 24/245 (9%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79
T LLC R L V VGD+V V +ID + R ++ V RS+ ++ PPVAN
Sbjct: 30 TPARLLCTRRTRLNHRGAAVHVGDRVTVEAIDPIQARAVVSAVEPRSSFLVRPPVANASC 89
Query: 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEP 139
+L+ + +QP + +RFL+ AE TG+ + L L K +L+ E K RL WGY P
Sbjct: 90 VLVALAAEQPAFDADQASRFLLTAEQTGLQVQLVLTKCDLLAPEQQLALKQRLEGWGYAP 149
Query: 140 LFCSVESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ SV++ LGLD L L Q TV+ GPSGVGKSSLINAL P
Sbjct: 150 VMVSVQTGLGLDPLRAVLASQAITVLCGPSGVGKSSLINALL----------------PG 193
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
L RVG VS + RG+HTTRHV L P S G +ADTPGFN+P L ++L
Sbjct: 194 LA------LRVGAVSGRLQRGRHTTRHVELHPFSPGARVADTPGFNRPD-LPGDARNLEV 246
Query: 259 TFPEV 263
FPE+
Sbjct: 247 LFPEL 251
>gi|33239471|ref|NP_874413.1| GTPase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|38257396|sp|Q7VEJ4.1|RSGA_PROMA RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|33236996|gb|AAP99065.1| Predicted GTPase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 309
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 134/241 (55%), Gaps = 24/241 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ L V VGD V++ +IDW G+I V R I PPVANV ++++
Sbjct: 46 LLCTKRSRLSYKGHSVSVGDFVLIEAIDWTAETGVISFVEPRKNLITRPPVANVTDVIIV 105
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
S+ P + ++RFL++AE TG+ +T+ L K +L+DE++L + +L TWGY+P+ S
Sbjct: 106 VSLLDPSFDLNQVSRFLMKAEETGLKVTIVLTKRDLIDEKILEKYDKKLQTWGYQPIPIS 165
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + G+ L RL+ + V+ GPSGVGKSSLIN L P S
Sbjct: 166 IVNGEGIQKLSARLKSMKLGVLCGPSGVGKSSLINYLL--PKISIP-------------- 209
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+G++S K RG+HTTRHV L + ++ADTPGFN+P Q + Q FPE
Sbjct: 210 ------IGKLSKKLKRGRHTTRHVELFSIYSDSFIADTPGFNKPEFYTEPSQ-VPQLFPE 262
Query: 263 V 263
+
Sbjct: 263 L 263
>gi|254430506|ref|ZP_05044209.1| GTPase [Cyanobium sp. PCC 7001]
gi|197624959|gb|EDY37518.1| GTPase [Cyanobium sp. PCC 7001]
Length = 379
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 134/251 (53%), Gaps = 28/251 (11%)
Query: 18 DKTGVE----LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP 73
D+ G E LLC R L K + VGD+V V IDW RG + V R + P
Sbjct: 44 DQPGPEARTRLLCTRRTRLAKSGLAICVGDRVRVDGIDWRAGRGAVAAVHPRHGRLERPA 103
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
VANV ++++ S+ +P L+P LTRFL+ AE+ G P+ L L+K +LV + W R+
Sbjct: 104 VANVSRIVVVASLAEPALDPLQLTRFLITAEACGSPVLLVLSKADLVPPAERDAWCRRVR 163
Query: 134 TWGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
WGY P+ +V S GL++L + L + V+ GPSGVGKSSL+NAL
Sbjct: 164 GWGYPPVALAVPSGEGLEALRRELSQPGIAVLCGPSGVGKSSLLNAL------------- 210
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
P L RV VS + RG+HTTRHV L + +ADTPGFN+P+L +
Sbjct: 211 ---VPELA------LRVAAVSGRLQRGRHTTRHVELFGIGPQALVADTPGFNRPALPR-Q 260
Query: 253 KQSLAQTFPEV 263
+ L FPEV
Sbjct: 261 PELLGPLFPEV 271
>gi|88809340|ref|ZP_01124848.1| hypothetical protein WH7805_09319 [Synechococcus sp. WH 7805]
gi|88786559|gb|EAR17718.1| hypothetical protein WH7805_09319 [Synechococcus sp. WH 7805]
Length = 302
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 134/243 (55%), Gaps = 24/243 (9%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
LLC R L V VGD+V V +ID + R ++ +V RS+ ++ PPVAN +L
Sbjct: 32 ARLLCTRRTRLHHRGAAVHVGDRVTVEAIDPLQARAVVSDVEPRSSFLVRPPVANASCVL 91
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
+ +++QP + +RFL+ AE TG+ + L L K +L+ E K RLH WGY P+
Sbjct: 92 VALAVEQPAFDADQASRFLLTAEQTGLRVQLVLTKSDLLAPEHQLALKQRLHGWGYSPVL 151
Query: 142 CSVESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
SV++ GL++L L Q TV+ GPSGVGKSSL+NAL P L
Sbjct: 152 VSVQTGAGLNTLRAVLASQAITVLCGPSGVGKSSLLNAL----------------LPGLA 195
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
RVG VS + RG+HTTRHV L P + G +ADTPGFN+P L ++L F
Sbjct: 196 ------LRVGAVSGRLQRGRHTTRHVELHPFAPGARVADTPGFNRPD-LPGDARNLEVLF 248
Query: 261 PEV 263
PE+
Sbjct: 249 PEL 251
>gi|398818318|ref|ZP_10576910.1| ribosome small subunit-dependent GTPase A [Brevibacillus sp. BC25]
gi|398028086|gb|EJL21610.1| ribosome small subunit-dependent GTPase A [Brevibacillus sp. BC25]
Length = 296
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 130/237 (54%), Gaps = 26/237 (10%)
Query: 26 CVVRALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C R L KK +V LVGD VV +I+ + G I V +R+ E++ PPV+NVD +L+
Sbjct: 25 CRARGLFKKKDAKVNPLVGDWVVYDAIN--EEEGYIMAVGERTNELVRPPVSNVDQAVLV 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FSM +P P L +FL E GI + L+K + V EE + + GY + S
Sbjct: 83 FSMYKPMFSPLLLDKFLTHTERAGIDSVIVLSKADQVSEEEVTEIVEKYEAIGYRVIPTS 142
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ G++ + + LRD+ +V G SGVGKSSLIN L P S
Sbjct: 143 TADERGVEEVREILRDRISVFAGQSGVGKSSLINML--FPGVS----------------- 183
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+ G+VS K GRGKHTTRHV L+PL+GGGY+ADTPGF+ + ++ LA++F
Sbjct: 184 ---LQTGDVSQKLGRGKHTTRHVELIPLAGGGYVADTPGFSSLEFIDFSELDLAESF 237
>gi|159464341|ref|XP_001690400.1| hypothetical protein CHLREDRAFT_49443 [Chlamydomonas reinhardtii]
gi|158279900|gb|EDP05659.1| predicted protein [Chlamydomonas reinhardtii]
Length = 308
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 124/216 (57%), Gaps = 23/216 (10%)
Query: 49 SIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI 108
++DWV RG + V RS+ + DP VANV+H LL+F++D P E ++RFLV E+ G+
Sbjct: 27 AVDWVAGRGAVSEVLPRSSRLTDPAVANVEHALLVFALDTPPFEEQQVSRFLVAYEAAGV 86
Query: 109 PLTLALNKVELVDEEVLNTWKSRL-HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGP 167
+L LNK +LV EVL RL WGYEP+ S E+ G++ + RL D+ +V+ GP
Sbjct: 87 SFSLVLNKADLVAPEVL---AGRLAQAWGYEPVVLSCETGEGVEQVAARLSDRVSVVAGP 143
Query: 168 SGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227
SG GKSSLIN LR H D + G+ GRG HTT +S
Sbjct: 144 SGAGKSSLINLLRRGRHRPD-------LQAAPGTAAM------------GRGMHTTTSIS 184
Query: 228 LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
LL L GGG+LADTPGF QP+L + LA FPE+
Sbjct: 185 LLRLLGGGWLADTPGFGQPTLDDIASPQLAACFPEI 220
>gi|113955161|ref|YP_729264.1| ribosome-associated GTPase YjeQ [Synechococcus sp. CC9311]
gi|123132802|sp|Q0IE58.1|RSGA_SYNS3 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|113882512|gb|ABI47470.1| ribosome-associated GTPase YjeQ [Synechococcus sp. CC9311]
Length = 304
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 131/241 (54%), Gaps = 24/241 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID R ++ +V R + + PPVAN +++
Sbjct: 36 LLCTRRTRLSHRGEAVYVGDRVRVEAIDVSHARAVVADVEPRVSFLTRPPVANASTVVVA 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++DQP +P +RFL+ AE T + + L L K +L++ E L + RL WGY PL S
Sbjct: 96 LAVDQPAFDPDQASRFLLTAERTSLAVQLVLTKTDLLEPEALERLRVRLQAWGYPPLLVS 155
Query: 144 VESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S LGL L QRL + + +V+ GPSGVGKSSL+NAL P L
Sbjct: 156 TFSGLGLSELKQRLAESSLSVLCGPSGVGKSSLLNAL----------------IPEL--- 196
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D R+G VS + RG+HTTRHV L L +ADTPGFN+P L ++L FPE
Sbjct: 197 ---DLRIGSVSGRLQRGRHTTRHVELHHLGAKARVADTPGFNRPDLPD-DPRNLEVLFPE 252
Query: 263 V 263
+
Sbjct: 253 L 253
>gi|253580151|ref|ZP_04857418.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848670|gb|EES76633.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 292
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 122/237 (51%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K++ LVGD V + +D ++ G + + R ++ P VANVD ++F+
Sbjct: 25 CKAKGIFRKDKQKPLVGDNVEIEVLDEQEKEGSVTAILPRKNSLIRPAVANVDQAFVIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
M+ PK L RFL+ E +P + NK +L +E L + GY+ +F S
Sbjct: 85 MENPKPNFMLLDRFLIMMEKENVPAVICFNKKDLAKQEELELLYETYKSCGYDVIFSSTF 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ GLD + + L+ +TTV+ GPSGVGKSS+ NAL+ +
Sbjct: 145 NGEGLDEIREILKGKTTVVAGPSGVGKSSITNALQENVQME------------------- 185
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S K RGKHTTRH ++P+ YL DTPGF+ L + +Q L FPE
Sbjct: 186 ---TGEISKKLKRGKHTTRHSQVIPVGHDTYLMDTPGFSSLYLTDIEEQELKAYFPE 239
>gi|333371221|ref|ZP_08463181.1| ribosome-associated GTP-binding protein [Desmospora sp. 8437]
gi|332976463|gb|EGK13309.1| ribosome-associated GTP-binding protein [Desmospora sp. 8437]
Length = 291
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 135/241 (56%), Gaps = 25/241 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK K LVGD+V D ++ G++ + RSTE+L PPVANV+ +++ S
Sbjct: 25 CRARGIFKKKKESPLVGDRVTYEETDPME--GVVTRIHPRSTELLRPPVANVEQAVVVGS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSV 144
+ QP +P L RFLV AE G+ + + L K +L+ D + + ++ GY L SV
Sbjct: 83 LRQPGFQPELLDRFLVHAEREGLEVLILLTKRDLLEDGDEVERIRAIYAPAGYRVLPTSV 142
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ G++++ + L+ Q +V GPSG GKSSL+NA+ AAD+
Sbjct: 143 RTGEGIEAVKRALQGQLSVFAGPSGAGKSSLLNAVLP------AADL------------- 183
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
+ GEVS K GRG+HTTRHV +L L GGG +ADTPGF+Q S + L FPE+
Sbjct: 184 ---QTGEVSKKLGRGRHTTRHVEILDLPGGGQVADTPGFSQLSFGGFEETELGACFPELA 240
Query: 265 A 265
A
Sbjct: 241 A 241
>gi|226313311|ref|YP_002773205.1| GTPase [Brevibacillus brevis NBRC 100599]
gi|226096259|dbj|BAH44701.1| GTPase [Brevibacillus brevis NBRC 100599]
Length = 296
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 129/237 (54%), Gaps = 26/237 (10%)
Query: 26 CVVRALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C R L KK +V LVGD VV I+ + G I V +R+ E++ PP++NVD +L+
Sbjct: 25 CRARGLFKKKDAKVNPLVGDWVVYDVIN--EEEGYIMEVGERTNELVRPPISNVDQAVLV 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FSM +P P L +FL E GI + L+K + V EE + + GY + S
Sbjct: 83 FSMYKPMFSPLLLDKFLTHTEHAGIDSVIVLSKADQVSEEEVTEIVKKYEAIGYRVIPTS 142
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ G++ + + LRD+ +V G SGVGKSSLIN L P S
Sbjct: 143 TVDERGVEDVREILRDRISVFAGQSGVGKSSLINML--FPGVS----------------- 183
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+ G+VS K GRGKHTTRHV L+PL+GGGY+ADTPGF+ + ++ LA++F
Sbjct: 184 ---LQTGDVSQKLGRGKHTTRHVELIPLAGGGYVADTPGFSSLEFIDFSELDLAESF 237
>gi|357040462|ref|ZP_09102249.1| ribosome biogenesis GTPase RsgA [Desulfotomaculum gibsoniae DSM
7213]
gi|355356553|gb|EHG04339.1| ribosome biogenesis GTPase RsgA [Desulfotomaculum gibsoniae DSM
7213]
Length = 289
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 145/254 (57%), Gaps = 26/254 (10%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
L C +R +++ + +VLVGD+V + I+ D G++E++ RSTE++ PPVANV+ +++
Sbjct: 22 LNCAIRGKIRRQRGQVLVGDRVRIKQINDTD--GVVEDILPRSTELVRPPVANVEQSVII 79
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F+++ P+ P L RFLV++ ++ I + NK +LV + + K T GY + S
Sbjct: 80 FAINNPEPNPSLLDRFLVQSLASRITPLICFNKNDLVGDTEPDIVKQYKKT-GYAVFWVS 138
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
++ +D L + L D+ TV GPSGVGKSSL+NAL +P L K
Sbjct: 139 AKTGSHIDELREVLTDRITVFAGPSGVGKSSLLNAL----------------QPGLVLK- 181
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
G++STK RGKHTTRHV L+PL+GGG +ADTPGF+ L + ++ LA F E
Sbjct: 182 -----TGDISTKLKRGKHTTRHVELIPLAGGGLVADTPGFSSMHLPPMLREELAGYFIEF 236
Query: 264 CAV-GLLYMIHMLH 276
G + LH
Sbjct: 237 AVYEGQCKFVGCLH 250
>gi|240147171|ref|ZP_04745772.1| ribosome small subunit-dependent GTPase A [Roseburia intestinalis
L1-82]
gi|257200638|gb|EEU98922.1| ribosome small subunit-dependent GTPase A [Roseburia intestinalis
L1-82]
Length = 292
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 128/237 (54%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + + LVGD V + +D ++G IE + R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRNQNIKPLVGDNVEIAVLDEEHKKGNIEKILPRENELIRPAVANIDLALIIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P+ L RFLV E +P+ + NK +LV EE L+ + GY LF S +
Sbjct: 85 AAKPQPNFNLLDRFLVMMEYQNVPVAICFNKTDLVTEEELHAFADIYAACGYRTLFASAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D+LL+ L+ +T + GPSGVGKSSL+N L+ P+ +
Sbjct: 145 EEKGVDALLELLKGKTAAVAGPSGVGKSSLVNRLQ--PNIT------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GEVS K RG+HTTRH ++P+ G Y+ DTPGF+ + + K+ L +PE
Sbjct: 184 -MQTGEVSRKIERGRHTTRHSEIIPIGGDTYIMDTPGFSTLYIPGMEKEDLKGFYPE 239
>gi|159902560|ref|YP_001549904.1| GTPase [Prochlorococcus marinus str. MIT 9211]
gi|159887736|gb|ABX07950.1| Predicted GTPase [Prochlorococcus marinus str. MIT 9211]
Length = 313
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 139/250 (55%), Gaps = 24/250 (9%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D + + LLC R+ L + V VGD+V+V +I + G++ +F RS+ PPV
Sbjct: 36 DLDIEVSSRLLCTQRSRLAYSESFVSVGDRVLVEAISFSKATGVVCKIFPRSSFFERPPV 95
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+ ++ +L S+DQP+ + +RFL+ AE+T ++L L K +L+ + +LN + RL+
Sbjct: 96 ANITNIFVLISLDQPRFDYDQASRFLLTAENTRQKVSLILTKKDLITQNLLNQYLDRLNQ 155
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
WGY P SV++ G+ L L + + V GPSG GKSSL+N L P+AS
Sbjct: 156 WGYNPYPISVKTGDGVQKLKNTLTNSKIGVFCGPSGAGKSSLLNYLL--PYASIP----- 208
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
VG++S K RGKHTTR+V L L+ +ADTPGFN+P + +
Sbjct: 209 ---------------VGDLSKKLSRGKHTTRNVELFQLTNNSLIADTPGFNRPE-IDIDP 252
Query: 254 QSLAQTFPEV 263
+ LA FPE+
Sbjct: 253 KELAFLFPEI 262
>gi|78183606|ref|YP_376040.1| GTPase EngC [Synechococcus sp. CC9902]
gi|78167900|gb|ABB24997.1| GTPase EngC [Synechococcus sp. CC9902]
Length = 300
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 132/243 (54%), Gaps = 24/243 (9%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
LLC R+ L + V VGD+V V +ID R ++ V R + + PPVANV ++
Sbjct: 30 ARLLCTRRSRLTHRGQEVNVGDRVRVDAIDANAARAVVSEVSPRQSWLTRPPVANVSLVV 89
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
+ ++DQP +P +RFL+ AE TG+ + L L KV+LV E L RL WGY+PL
Sbjct: 90 VALAVDQPAFDPDQASRFLLTAERTGLDVQLVLTKVDLVSAEALTQLCERLRGWGYDPLP 149
Query: 142 CSVESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S ES G+ L +RL+ T V+ GPSGVGKSS++N+L PH S
Sbjct: 150 LSSESGSGIKVLQKRLQSTTLAVLCGPSGVGKSSVLNSL--LPHLS-------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
RVG VS + RG+HTTRHV L P+ +ADTPGFN+P L L F
Sbjct: 194 ------LRVGAVSGRLQRGRHTTRHVELFPIGDEARVADTPGFNRPELPD-DPHELGVLF 246
Query: 261 PEV 263
PE+
Sbjct: 247 PEL 249
>gi|291541047|emb|CBL14158.1| ribosome small subunit-dependent GTPase A [Roseburia intestinalis
XB6B4]
Length = 292
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 128/237 (54%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + + LVGD V + +D ++G IE + R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRNQNIKPLVGDNVEIAVLDEEHKKGNIEKILPRENELIRPAVANIDLALIIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P+ L RFLV E +P+ + NK +LV EE L+ + GY L+ S +
Sbjct: 85 AAKPQPNFNLLDRFLVMMEYQNVPVAICFNKTDLVTEEELHAFADIYAACGYRTLYASAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D+LL+ L+ +T + GPSGVGKSSL+N L+ P+ +
Sbjct: 145 EEKGVDALLELLKGKTAAVAGPSGVGKSSLVNRLQ--PNIT------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GEVS K RG+HTTRH ++P+ G Y+ DTPGF+ + + K+ L +PE
Sbjct: 184 -MQTGEVSRKIERGRHTTRHSEIIPIGGDTYIMDTPGFSTLYIPGMEKEDLKGFYPE 239
>gi|291536611|emb|CBL09723.1| ribosome small subunit-dependent GTPase A [Roseburia intestinalis
M50/1]
Length = 292
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 128/237 (54%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + + LVGD V + +D ++G IE V R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRNQNIKPLVGDNVEIAVLDEEHKKGNIEKVLPRENELIRPAVANIDLALIIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P+ L RFLV E +P+ + NK +LV EE L+ + GY L+ S +
Sbjct: 85 AAKPQPNFNLLDRFLVMMEYQNVPVAICFNKTDLVTEEELHAFADIYAACGYRTLYVSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D+LL+ L+ +T + GPSGVGKSSL+N L+ P+ +
Sbjct: 145 EEKGVDALLELLKGKTAAVAGPSGVGKSSLVNRLQ--PNIT------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GEVS K RG+HTTRH ++P+ G Y+ DTPGF+ + + K+ L +PE
Sbjct: 184 -MQTGEVSRKIERGRHTTRHSEIIPIGGDTYIMDTPGFSTLYIPGMEKEDLKGFYPE 239
>gi|399048077|ref|ZP_10739807.1| ribosome small subunit-dependent GTPase A [Brevibacillus sp. CF112]
gi|398053991|gb|EJL46137.1| ribosome small subunit-dependent GTPase A [Brevibacillus sp. CF112]
Length = 296
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 131/243 (53%), Gaps = 26/243 (10%)
Query: 26 CVVRALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C R L KK +V LVGD VV +I+ + G + V +R+ E++ PP++NVD +L+
Sbjct: 25 CRARGLFKKKDAKVNPLVGDWVVYDAIN--EEEGYVMEVGERTNELVRPPISNVDQAVLV 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FSM +P L +FL E GI + L+K + V +E ++ + GY+ + S
Sbjct: 83 FSMYKPMFSSLLLDKFLAHTEHVGIDSVIVLSKADQVSQEEVDAIVRQYEAIGYQVIPTS 142
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ GL+ + L D+ TV G SGVGKSSLIN L P S
Sbjct: 143 TVDERGLEEVRSILHDRITVFAGQSGVGKSSLINTL--FPGVS----------------- 183
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ G+VS K GRGKHTTRHV L+PL GGGY+ADTPGF+ + T+ LA++F +
Sbjct: 184 ---LQTGDVSQKLGRGKHTTRHVELIPLPGGGYVADTPGFSSLEFIDFTELDLAESFRDF 240
Query: 264 CAV 266
A+
Sbjct: 241 AAL 243
>gi|15615066|ref|NP_243369.1| ribosome-associated GTPase [Bacillus halodurans C-125]
gi|38257772|sp|Q9K9Z1.1|RSGA_BACHD RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|10175123|dbj|BAB06222.1| BH2503 [Bacillus halodurans C-125]
Length = 294
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 129/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + LVGD+VV + + D G + + +R E+L PP+ANVD +L+FS
Sbjct: 25 CRGRGNFRNRNIKPLVGDEVVFEAENKTD--GYVLEIMERKNELLRPPIANVDRAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E+ GI + ++K++L+ EE L T K + + GY+
Sbjct: 83 AAEPTFSPLLLDRFLVHVEANGIEPLIVISKIDLLTEEELETIKQYRNDYEQLGYKVYLT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +LGLD++ + D +VI G SGVGKSSL+NA+ P L
Sbjct: 143 STIEQLGLDAIRKEFDDHVSVIAGQSGVGKSSLLNAIN----------------PAL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D ++S+ GRGKHTTRHV L+P G G +ADTPGF+ + + + L+ FPE
Sbjct: 184 ---DIETNQISSHLGRGKHTTRHVELIPF-GSGLVADTPGFSSLDFIDMEPEELSHYFPE 239
Query: 263 V 263
+
Sbjct: 240 M 240
>gi|325662238|ref|ZP_08150853.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471490|gb|EGC74711.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
4_1_37FAA]
Length = 298
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 123/237 (51%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K KR+ LVGD V + + ++ G I +F R E++ P VAN+D L++F+
Sbjct: 31 CKAKGSFRKEKRKPLVGDNVEIDCLSEEEKTGNIIQIFPRKNELIRPAVANIDQALVVFA 90
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RFL+ E+ GIP L NK ++ E+ + + GY+ LF S +
Sbjct: 91 VTDPKPHFNLLDRFLIMMETKGIPAVLCFNKQDIATEKEIQELQEIYRRCGYQILFTSAK 150
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ + + + L+ +TT + GPSGVGKSSLIN L+ P A
Sbjct: 151 KEENIALVKEVLKGKTTTVAGPSGVGKSSLINILQ--PEAK------------------- 189
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S K RGKHTTRH L+P+ Y+ DTPGF+ + + K+ L FPE
Sbjct: 190 -METGEISKKIARGKHTTRHSELIPIDEDSYIMDTPGFSSLYVNEFEKEELKYYFPE 245
>gi|331086039|ref|ZP_08335122.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406962|gb|EGG86467.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 292
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 123/237 (51%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K KR+ LVGD V + + ++ G I +F R E++ P VAN+D L++F+
Sbjct: 25 CKAKGSFRKEKRKPLVGDNVEIDCLSEEEKTGNIIQIFPRKNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RFL+ E+ GIP L NK ++ E+ + + GY+ LF S +
Sbjct: 85 VTDPKPHFNLLDRFLIMMETKGIPAVLCFNKQDIATEKEIQELQEIYRRCGYQILFTSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ + + + L+ +TT + GPSGVGKSSLIN L+ P A
Sbjct: 145 KEENIALVKEVLKGKTTTVAGPSGVGKSSLINILQ--PEAK------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S K RGKHTTRH L+P+ Y+ DTPGF+ + + K+ L FPE
Sbjct: 184 -METGEISKKIARGKHTTRHSELIPIDEDSYIMDTPGFSSLYVNEFEKEELKYYFPE 239
>gi|150390538|ref|YP_001320587.1| ribosome small subunit-dependent GTPase A [Alkaliphilus
metalliredigens QYMF]
gi|254766347|sp|A6TRW0.1|RSGA_ALKMQ RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|149950400|gb|ABR48928.1| ribosome small subunit-dependent GTPase A [Alkaliphilus
metalliredigens QYMF]
Length = 292
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 131/235 (55%), Gaps = 22/235 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +L+K K LVGD V + D +++GMI+++F R TE++ P VANVD ++++FS
Sbjct: 25 CKGRGILRKKKLTPLVGDYVEITVTDEDNKKGMIDDIFPRKTELIRPTVANVDQVIVVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ QP L FL+ AE+ I + + LNK++LV E + GY + S
Sbjct: 85 VTQPDPHLSLLDHFLILAETQNIDVVICLNKLDLVQREDVAELVGIYEKVGYPVILTSQN 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+GL+ L + LR +TTV GPSGVGKS+L+N R PH +
Sbjct: 145 DSIGLEQLEKVLRGKTTVFAGPSGVGKSTLLN--RILPHVT------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+ GE+S+K RGKHTTRHV L+ L G++ DTPGF+ ++ + ++ LA F
Sbjct: 184 -LQTGELSSKIARGKHTTRHVELISLETEGWVVDTPGFSSLNIDFLKEEELADYF 237
>gi|414152946|ref|ZP_11409273.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411455328|emb|CCO07175.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 292
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 128/242 (52%), Gaps = 25/242 (10%)
Query: 26 CVVRALLKKIK-RRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLF 84
C +R + K LVGD+V V + G I+ V R TE+ PPVAN+D +++F
Sbjct: 25 CTLRGKFRLAKGAAALVGDRVRVTPVR--GNTGRIDEVLPRKTELFRPPVANIDQAVIVF 82
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV 144
++ P+ L RFLV AE G+ + LNK +L+ + W GY + S
Sbjct: 83 AVQDPEPNLALLDRFLVLAEHAGVAPVVCLNKADLLSGRRDHEWLRLYRKIGYPTVITST 142
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
++ G+D L Q L +T+V+ GPSGVGKSSL+NA+ +P L K
Sbjct: 143 QNNEGIDDLRQLLAGKTSVLAGPSGVGKSSLLNAV----------------QPGLQLK-- 184
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
GE+S K RGKHTTRHV LLPL+ GG++ADTPGF+ L + ++ L FPE
Sbjct: 185 ----TGEISYKLRRGKHTTRHVELLPLTNGGFVADTPGFSSLDLPDMEREELGYCFPEFA 240
Query: 265 AV 266
A
Sbjct: 241 AC 242
>gi|352096744|ref|ZP_08957500.1| ribosome biogenesis GTPase RsgA [Synechococcus sp. WH 8016]
gi|351675966|gb|EHA59124.1| ribosome biogenesis GTPase RsgA [Synechococcus sp. WH 8016]
Length = 291
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 132/243 (54%), Gaps = 26/243 (10%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID R ++ +V R + + PPVAN +++
Sbjct: 25 LLCTRRTRLSHRGEAVFVGDRVRVEAIDVSHARAVVADVEPRFSFLTRPPVANATTVVVA 84
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++DQP +P +RFL+ AE T + + L L K +L++ E L T RLH WGY PL S
Sbjct: 85 LAVDQPAFDPDQASRFLLTAERTSLVVQLVLTKTDLLEPEALETL--RLHAWGYPPLLVS 142
Query: 144 VESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ LGL +L +RL +V+ GPSGVGKSSL+NAL D++
Sbjct: 143 TSNGLGLSNLKERLAGSPLSVLCGPSGVGKSSLLNAL--------IPDLE---------- 184
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
R+G VS + RG+HTTRHV L L +ADTPGFN+P L ++L FPE
Sbjct: 185 ----LRIGAVSGRLQRGRHTTRHVELHRLGAEARVADTPGFNRPELPD-DPRNLEVLFPE 239
Query: 263 VCA 265
+ A
Sbjct: 240 LRA 242
>gi|333978762|ref|YP_004516707.1| ribosome biogenesis GTPase RsgA [Desulfotomaculum kuznetsovii DSM
6115]
gi|333822243|gb|AEG14906.1| ribosome biogenesis GTPase RsgA [Desulfotomaculum kuznetsovii DSM
6115]
Length = 291
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 128/237 (54%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R ++ K++VLVGD+V +G+IE + R T ++ PPVANVD L++F+
Sbjct: 26 CALRGRFRREKKQVLVGDRVTFRL--QPHGQGVIEEIHPRRTILVRPPVANVDRALIVFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
M P F L RFL++AE G+ + NKV+L E++ GY + S
Sbjct: 84 MKDPDPNTFLLDRFLIQAEHAGVGPAICFNKVDL-GEDLSRDMIGAYRRAGYPVVCTSTL 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
GLD L L+ TV+ GPSGVGKSSL+NAL P L K
Sbjct: 143 DGSGLDELRALLQGHITVLAGPSGVGKSSLLNAL----------------VPGLNLK--- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S K GRG+HTTRHV LL L GGG +ADTPGF+ L ++ ++ L + +PE
Sbjct: 184 ---TGEISRKLGRGRHTTRHVELLRLPGGGLVADTPGFSSLYLPEMKREELGEFYPE 237
>gi|423084331|ref|ZP_17072836.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
002-P50-2011]
gi|423088027|ref|ZP_17076412.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
050-P50-2011]
gi|357542636|gb|EHJ24678.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
002-P50-2011]
gi|357543555|gb|EHJ25572.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
050-P50-2011]
Length = 294
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 128/237 (54%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+V + +D +++G++E V R TE++ PP+ANVD L++F+
Sbjct: 25 CKARGIFRKQKITPLVGDRVKISIVDEDEKKGILEEVDSRDTELIRPPIANVDKALIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RF+V AE + + L K +L D + L T K+ GY+ + S
Sbjct: 85 IKNPKPNLSLLDRFIVLAEKENLETVIILTKADLDDNDTLETVKNIYELSGYKVIPVSNI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+KL +D + + L++ V GPSGVGKSSL+N ++D F+
Sbjct: 145 TKLNIDKVKEELKENVVVFAGPSGVGKSSLLN------------EIDENFK--------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G VS K RGKHTTRH LL L GG +ADTPGF+ +L + + L F E
Sbjct: 184 -LQTGVVSDKIKRGKHTTRHAELLKLEFGGMVADTPGFSSLALEDIEEVELKDYFIE 239
>gi|158320468|ref|YP_001512975.1| ribosome small subunit-dependent GTPase A [Alkaliphilus oremlandii
OhILAs]
gi|158140667|gb|ABW18979.1| ribosome small subunit-dependent GTPase A [Alkaliphilus oremlandii
OhILAs]
Length = 292
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 137/241 (56%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R L +K K LVGD V + +D +++G+IE++ R E++ P V+N+D +++F+
Sbjct: 25 CKARGLFRKKKITPLVGDYVEIDVLDHKNKKGVIEDIKSRKNELIRPSVSNIDQAIVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLF 141
+ QP L RFLV AES + + + LNK++L++ EE+++T+++ GY+ +
Sbjct: 85 VTQPDPHLSLLDRFLVLAESQRLNIIICLNKIDLLEPADYEEIVHTYRA----AGYKIIL 140
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + ++G++ L L+++TTV GPSGVGKS+L+N + G
Sbjct: 141 TSTKKEIGIEELRHELKNKTTVFAGPSGVGKSTLLNHVHP------------------GL 182
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
K + GE+STK RGKHTTRH ++ + G++ DTPGF+ + + + L FP
Sbjct: 183 KL----QTGEISTKISRGKHTTRHAEIMEIEENGWVVDTPGFSSLDMNFIDESDLHYYFP 238
Query: 262 E 262
E
Sbjct: 239 E 239
>gi|255307609|ref|ZP_05351780.1| putative ATP/GTP-binding protein [Clostridium difficile ATCC 43255]
gi|423092606|ref|ZP_17080410.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
70-100-2010]
gi|357553476|gb|EHJ35223.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
70-100-2010]
Length = 294
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 128/237 (54%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+V + +D +++G++E + R TE++ PP+ANVD L++F+
Sbjct: 25 CKARGIFRKQKITPLVGDRVKISIVDENEKKGILEEIDSRDTELIRPPIANVDKALIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RF+V AE + + L K +L D + L T K+ GY+ + S
Sbjct: 85 IKNPKPNLSLLDRFIVLAEKENLETVIILTKADLDDNDTLETVKNIYELSGYKVIPVSNI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+KL +D + + L++ V GPSGVGKSSL+N ++D F+
Sbjct: 145 TKLNIDKVKEELKENVVVFAGPSGVGKSSLLN------------EIDENFK--------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G VS K RGKHTTRH LL L GG +ADTPGF+ +L + + L F E
Sbjct: 184 -LQTGVVSDKIKRGKHTTRHAELLKLEFGGMVADTPGFSSLALEDIEEVELKDYFIE 239
>gi|126700195|ref|YP_001089092.1| GTPase [Clostridium difficile 630]
gi|254976167|ref|ZP_05272639.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-66c26]
gi|255093557|ref|ZP_05323035.1| putative ATP/GTP-binding protein [Clostridium difficile CIP 107932]
gi|255315300|ref|ZP_05356883.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-76w55]
gi|255517968|ref|ZP_05385644.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-97b34]
gi|255651084|ref|ZP_05397986.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-37x79]
gi|384361791|ref|YP_006199643.1| ATP/GTP-binding protein [Clostridium difficile BI1]
gi|115251632|emb|CAJ69465.1| putative GTPase [Clostridium difficile 630]
Length = 294
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 128/237 (54%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+V + +D +++G++E + R TE++ PP+ANVD L++F+
Sbjct: 25 CKARGIFRKQKITPLVGDRVKISIVDEDEKKGILEEIDSRDTELIRPPIANVDKALIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RF+V AE + + L K +L D + L T K+ GY+ + S
Sbjct: 85 IKNPKPNLSLLDRFIVLAEKENLETVIILTKADLDDNDTLETVKNIYELSGYKVIPVSNI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+KL +D + + L++ V GPSGVGKSSL+N ++D F+
Sbjct: 145 TKLNIDKVKEELKENVVVFAGPSGVGKSSLLN------------EIDENFK--------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G VS K RGKHTTRH LL L GG +ADTPGF+ +L + + L F E
Sbjct: 184 -LQTGVVSDKIKRGKHTTRHAELLKLEFGGMVADTPGFSSLALEDIEEVELKDYFIE 239
>gi|260684149|ref|YP_003215434.1| ATP/GTP-binding protein [Clostridium difficile CD196]
gi|260687808|ref|YP_003218942.1| ATP/GTP-binding protein [Clostridium difficile R20291]
gi|260210312|emb|CBA64629.1| putative ATP/GTP-binding protein [Clostridium difficile CD196]
gi|260213825|emb|CBE05805.1| putative ATP/GTP-binding protein [Clostridium difficile R20291]
Length = 306
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 128/237 (54%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+V + +D +++G++E + R TE++ PP+ANVD L++F+
Sbjct: 37 CKARGIFRKQKITPLVGDRVKISIVDEDEKKGILEEIDSRDTELIRPPIANVDKALIVFA 96
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RF+V AE + + L K +L D + L T K+ GY+ + S
Sbjct: 97 IKNPKPNLSLLDRFIVLAEKENLETVIILTKADLDDNDTLETVKNIYELSGYKVIPVSNI 156
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+KL +D + + L++ V GPSGVGKSSL+N ++D F+
Sbjct: 157 TKLNIDKVKEELKENVVVFAGPSGVGKSSLLN------------EIDENFK--------- 195
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G VS K RGKHTTRH LL L GG +ADTPGF+ +L + + L F E
Sbjct: 196 -LQTGVVSDKIKRGKHTTRHAELLKLEFGGMVADTPGFSSLALEDIEEVELKDYFIE 251
>gi|339443656|ref|YP_004709661.1| putative GTPase [Clostridium sp. SY8519]
gi|338903057|dbj|BAK48559.1| predicted GTPase [Clostridium sp. SY8519]
Length = 293
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 119/237 (50%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K + LVGD + ID DR+G I + R ++ P +AN+D +++F+
Sbjct: 26 CKAKGIFRKNNLKPLVGDDCSIEVIDEADRQGNIVQIHPRKNSLIRPAIANIDQAVVIFA 85
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
PK + R LV E IP + NK +L +EE L+ K T GY +F S
Sbjct: 86 AVYPKPHLNLVDRLLVTMEKQQIPSLIVFNKKDLAEEEELDRLKEAYRTAGYLLIFTSTV 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D L+Q LR +T+ + GPSGVGKSS+IN R SP
Sbjct: 146 TGEGMDELMQNLRGKTSAVAGPSGVGKSSIIN--RLSPEVQ------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K RG+HTTRH L+ L+ Y+ADTPGF + K+ + + FPE
Sbjct: 185 -METGAVSKKIARGRHTTRHAQLIYLADHTYIADTPGFTSFGIDSFEKEEIGELFPE 240
>gi|121533692|ref|ZP_01665519.1| ribosome small subunit-dependent GTPase A [Thermosinus
carboxydivorans Nor1]
gi|121307683|gb|EAX48598.1| ribosome small subunit-dependent GTPase A [Thermosinus
carboxydivorans Nor1]
Length = 291
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 133/250 (53%), Gaps = 25/250 (10%)
Query: 19 KTGVEL-LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
+TG +L +C +R KK + +LVGD+V +D + +G+IE + R + + P VANV
Sbjct: 17 QTGDKLTMCTLRGRFKKERFSLLVGDEVEYLPLD--EGKGVIETILPRRSMLKRPMVANV 74
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++L F+ P + RFL+ AE + + + LNK++L D + GY
Sbjct: 75 DQVILTFAAASPDPSFVIIDRFLILAELSQLNAQICLNKIDLADAAEIGQIVDLYRKIGY 134
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
L SV++ G+D L ++L + TV GPSGVGKSSL+NA+ EP
Sbjct: 135 SVLETSVKTGQGIDELRRQLYGRITVFAGPSGVGKSSLLNAV----------------EP 178
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
L GE+S K GRGKHTTR LLPL+GGG++ DTPGF+ + LA
Sbjct: 179 GL------SLVTGEISIKIGRGKHTTRFAELLPLAGGGFVVDTPGFSFTEFADIVPTELA 232
Query: 258 QTFPEVCAVG 267
+ FPE+ A
Sbjct: 233 RAFPEIAAAA 242
>gi|210617183|ref|ZP_03291450.1| hypothetical protein CLONEX_03672 [Clostridium nexile DSM 1787]
gi|210149458|gb|EEA80467.1| hypothetical protein CLONEX_03672 [Clostridium nexile DSM 1787]
Length = 306
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 123/237 (51%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V + +D +++G I V +R E++ P VAN+D L++F+
Sbjct: 39 CKAKGVFRKEKIKPLVGDNVEIDILDEAEKKGNIVEVLERKNELIRPAVANIDQALVVFA 98
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +PK L RFL+ ES GIP+ L NK ++ E + K + GY+ +F S
Sbjct: 99 VTKPKPHFNLLDRFLIMMESKGIPVVLCFNKKDIAKEPEIQHLKEIYESCGYQMIFTSAL 158
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K ++++ Q LR +TT I GPSGVGKSSLIN + P A
Sbjct: 159 EKENIENVKQLLRGKTTAIAGPSGVGKSSLINIFQ--PDA-------------------- 196
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G +S K RGKHTTRH L+ + Y+ DTPGF+ K+ L F E
Sbjct: 197 NMETGTISEKIERGKHTTRHSELICIEEDTYIMDTPGFSSLYTNDFEKEELKYYFTE 253
>gi|33864562|ref|NP_896121.1| hypothetical protein SYNW0026 [Synechococcus sp. WH 8102]
gi|81575477|sp|Q7UA74.1|RSGA_SYNPX RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|33632085|emb|CAE06541.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 299
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 133/241 (55%), Gaps = 24/241 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID V R ++ V R + + P VANV +++
Sbjct: 31 LLCTRRTRLSHRGETVHVGDRVRVEAIDPVQARAVVSGVEPRCSWLTRPQVANVSLVVVA 90
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++DQP +P +RFL+ AE TG+P+ L L K +L++E RL WGY+ L S
Sbjct: 91 LAVDQPAFDPDQASRFLLTAERTGLPVQLLLTKGDLMEEHQRFALVERLMGWGYDSLVVS 150
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
++ G++ L QRL+D + V+ GPSGVGKSS++N L PH +
Sbjct: 151 SQTGEGVEVLSQRLKDTELAVLCGPSGVGKSSVLNCL--MPHLA---------------- 192
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVG VS + RG+HTTRHV L P++ G +ADTPGFN+P L + L FPE
Sbjct: 193 ----LRVGAVSGRLQRGRHTTRHVELFPIAPGSRVADTPGFNRPDLPDDPSE-LGMLFPE 247
Query: 263 V 263
+
Sbjct: 248 L 248
>gi|225569228|ref|ZP_03778253.1| hypothetical protein CLOHYLEM_05310 [Clostridium hylemonae DSM
15053]
gi|225162027|gb|EEG74646.1| hypothetical protein CLOHYLEM_05310 [Clostridium hylemonae DSM
15053]
Length = 292
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 120/237 (50%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V + + R G IE + R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRKEKIKPLVGDDVEIEVLSESGREGNIEKILPRRNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV ES GIP+ L NK ++ + + K GY LF S
Sbjct: 85 IARPSPHFNLLDRFLVMMESKGIPVILCFNKEDIATDPQVKELKEIYADCGYPLLFTSAR 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+D + + L+ +TT + GPSGVGKSSLIN L+ P A
Sbjct: 145 LGQNIDKVREVLKGRTTAVAGPSGVGKSSLINILQ--PEA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G +STK RGKHTTRH L P+ Y+ DTPGF+ + K+ L Q FPE
Sbjct: 183 NMETGAISTKIERGKHTTRHTELFPVGEDAYIMDTPGFSSLYVNDFEKEELKQYFPE 239
>gi|255101740|ref|ZP_05330717.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-63q42]
Length = 294
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 127/237 (53%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+V + +D +++G++E + R TE++ PP+ANVD L++F+
Sbjct: 25 CKARGIFRKQKITPLVGDRVKISIVDEDEKKGILEEIDSRDTELIRPPIANVDKALIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RF+V AE + + L K +L D + L T K+ GY+ + S
Sbjct: 85 IKNPKPNLSLLDRFIVLAEKENLETVIILTKADLDDNDTLETVKNIYELSGYKVIPVSNI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+KL +D + + L++ V GPSGVGKSSL+N ++D F+
Sbjct: 145 TKLNIDKVKEELKENVVVFAGPSGVGKSSLLN------------EIDENFK--------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G VS K RGKHTTRH LL L GG +ADTPGF+ L + + L F E
Sbjct: 184 -LQTGVVSDKIKRGKHTTRHAELLKLEFGGMVADTPGFSSLVLEDIEEVELKDYFIE 239
>gi|429765801|ref|ZP_19298081.1| ribosome small subunit-dependent GTPase A [Clostridium celatum DSM
1785]
gi|429185654|gb|EKY26628.1| ribosome small subunit-dependent GTPase A [Clostridium celatum DSM
1785]
Length = 296
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 126/238 (52%), Gaps = 28/238 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDR-RGMIENVFQRSTEILDPPVANVDHLLLLF 84
C R + + +VGD V + +D+ +G+I ++ +R +E++ P VANV ++F
Sbjct: 33 CKARGKFRHRDMKPMVGDDVDI----LIDKGKGVICDIHERVSELIRPTVANVTQAFVVF 88
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV 144
++ P + L RFLV ES I + LNKV+LV EE K+++++ GYE LF +
Sbjct: 89 AVKNPDINYDLLNRFLVLCESNNIKAIVCLNKVDLVTEEEKEIVKNKINSIGYEVLFINA 148
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ LG++SL +RL TV+ GPSG GKS+LIN L H
Sbjct: 149 KQGLGIESLKERLDSNVTVLCGPSGAGKSTLINTLTEKYH-------------------- 188
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GEVS K GRG+HTTRH L+ + GY+ DTPGF+ + + K L FPE
Sbjct: 189 --METGEVSEKIGRGRHTTRHSELIDVV-DGYIVDTPGFSTLEVNFIEKDDLKYCFPE 243
>gi|433544426|ref|ZP_20500810.1| GTPase [Brevibacillus agri BAB-2500]
gi|432184281|gb|ELK41798.1| GTPase [Brevibacillus agri BAB-2500]
Length = 272
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 130/240 (54%), Gaps = 26/240 (10%)
Query: 29 RALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSM 86
+ L KK +V LVGD VV +I+ + G + V +R+ E++ PP++NVD +L+FSM
Sbjct: 4 KRLFKKKDAKVNPLVGDWVVYDAIN--EEEGYVMEVGERTNELVRPPISNVDQAVLVFSM 61
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L +FL E GI + L+K + V +E ++ + GY+ + S
Sbjct: 62 YKPMFSSLLLDKFLAHTEHVGIDSVIVLSKADQVSQEEVDAIVRQYEAIGYQVIPTSTVD 121
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
+ GL+ + L D+ TV G SGVGKSSLIN L P S
Sbjct: 122 ERGLEEVRSILHDRITVFAGQSGVGKSSLINTL--FPGVS-------------------- 159
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
+ G+VS K GRGKHTTRHV L+PL GGGY+ADTPGF+ + T+ LA++F + A+
Sbjct: 160 LQTGDVSQKLGRGKHTTRHVELIPLPGGGYVADTPGFSSLEFIDFTELDLAESFRDFAAL 219
>gi|258515517|ref|YP_003191739.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
acetoxidans DSM 771]
gi|257779222|gb|ACV63116.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
acetoxidans DSM 771]
Length = 294
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 131/238 (55%), Gaps = 24/238 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R K K+ +LVGD+V + +I+ + G++E V R TE++ PPVAN+D +++F+
Sbjct: 26 CKPRGRFKIEKQLILVGDRVQIKTIN--KKNGVVEKVLPRITELVRPPVANIDCAIVVFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P+ L RF++ AE+ + NKV+L+ E + GY + SV+
Sbjct: 84 LKSPEPNLNLLDRFILLAEAGKTEPVICFNKVDLLSNEEVTPVLDIYDKIGYRTIVTSVK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ GL+ L L+D +V GPSGVGKSSL+NA+ +P L K
Sbjct: 144 TGAGLEELRAVLKDHISVFAGPSGVGKSSLLNAV----------------QPGLQLK--- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
GE+S K RG+HTTRHV LL L GGY+ DTPGF+ L ++ K+ LA FPE+
Sbjct: 185 ---TGEISEKLQRGRHTTRHVELLELDNGGYVVDTPGFSSLYLPQMLKEELAGFFPEM 239
>gi|339009266|ref|ZP_08641838.1| putative ribosome biogenesis GTPase RsgA [Brevibacillus
laterosporus LMG 15441]
gi|338773744|gb|EGP33275.1| putative ribosome biogenesis GTPase RsgA [Brevibacillus
laterosporus LMG 15441]
Length = 299
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 135/259 (52%), Gaps = 36/259 (13%)
Query: 4 IVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIEN 61
+ Q+ P R C R L KK ++ LVGD VV + + DR G +
Sbjct: 16 VADQANPERIVQCR----------ARGLFKKKGAKITPLVGDWVVFEAPN--DRDGYVME 63
Query: 62 VFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ +R++E++ P +ANVD +L+FS +P + P L +FLV E GI + + K +L++
Sbjct: 64 IEERTSELVRPSIANVDLAVLVFSAKEPDMSPLLLDKFLVHTEHAGIDAIIVITKADLLE 123
Query: 122 EEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
E+ + + + GY + S+ + G++ + + L + V G SGVGKSSL+NA+
Sbjct: 124 EQDCSRFVAEYEKVGYRVIPTSILDRRGVEQVREELIGKLAVFAGQSGVGKSSLLNAI-- 181
Query: 182 SPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241
F I + GE+S K GRG+HTTRHV LLPL GGY+ADTP
Sbjct: 182 -------------FPGI-------SLQTGEISQKLGRGRHTTRHVELLPLKEGGYVADTP 221
Query: 242 GFNQPSLLKVTKQSLAQTF 260
GF+ + +T+ LAQ F
Sbjct: 222 GFSSLDFINMTELDLAQAF 240
>gi|255656555|ref|ZP_05401964.1| putative ATP/GTP-binding protein [Clostridium difficile QCD-23m63]
gi|296449993|ref|ZP_06891757.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
NAP08]
gi|296878374|ref|ZP_06902382.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
NAP07]
gi|296261263|gb|EFH08094.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
NAP08]
gi|296430672|gb|EFH16511.1| ribosome small subunit-dependent GTPase A [Clostridium difficile
NAP07]
Length = 294
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 127/237 (53%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+V + +D +++G++E + R TE++ PP+ANVD L++F+
Sbjct: 25 CKARGIFRKHKITPLVGDRVKISIVDEDEKKGILEEIDSRDTELIRPPIANVDKALIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RF+V AE + + L K +L D + L T K GY+ + S
Sbjct: 85 IKNPKPNLSLLDRFIVLAEKENLETVIILTKADLDDNDTLETVKKIYELSGYKVIPVSNI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+KL ++ + + L++ V GPSGVGKSSL+N ++D F+
Sbjct: 145 TKLNIEKVKEELKENVVVFAGPSGVGKSSLLN------------EIDENFK--------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G VS K RGKHTTRH LL L GG +ADTPGF+ +L + + L F E
Sbjct: 184 -LQTGVVSDKIKRGKHTTRHAELLKLEFGGMVADTPGFSSLALEDIEEVELKDYFIE 239
>gi|154485077|ref|ZP_02027525.1| hypothetical protein EUBVEN_02800 [Eubacterium ventriosum ATCC
27560]
gi|149734030|gb|EDM50149.1| ribosome small subunit-dependent GTPase A [Eubacterium ventriosum
ATCC 27560]
Length = 294
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 126/238 (52%), Gaps = 22/238 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + LVGD V+V ID ++G I + +R +++ P VANVD +++F+
Sbjct: 25 CKAKGKFRNKSIKPLVGDNVMVDIIDEEKKKGNISEILERKNQLIRPAVANVDQAMIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV E I + NK+++ D++ +N ++ GY+ +F S
Sbjct: 85 VKKPNPNLNLLDRFLVMMEFQNIETIICFNKIDIGDDDYMNQLQTIYQKAGYKVMFASAT 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D + + L+ ++TV GPSGVGKSS++NAL +K ++
Sbjct: 145 KEQGVDKIKKMLKGKSTVFAGPSGVGKSSMLNAL---------------------TKDYK 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
G +S K GRGKHTTRH + + Y+ DTPGF+ + +TK+ L FPE+
Sbjct: 184 -METGAISEKIGRGKHTTRHSEIFNIDSNSYVFDTPGFSSLFVPGMTKEKLQYCFPEM 240
>gi|167760437|ref|ZP_02432564.1| hypothetical protein CLOSCI_02811 [Clostridium scindens ATCC 35704]
gi|167661936|gb|EDS06066.1| ribosome small subunit-dependent GTPase A [Clostridium scindens
ATCC 35704]
Length = 292
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 122/237 (51%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V++ ++D + G I V +R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRKEKIKPLVGDNVIIEALDEEQKTGNITEVLKRKNELVRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV ES IP+ L NK ++ + + ++ GY +F S
Sbjct: 85 IVRPNPHFNLLDRFLVMMESKEIPVILCFNKEDIATDPQVKELEAIYENCGYPLIFTSAL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+D + + LR +TT I GPSGVGKSS+IN L+ P A
Sbjct: 145 KDKNIDQVKEVLRGKTTAIAGPSGVGKSSIINILQ--PEA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G +S+K RGKHTTRH L P+ Y+ DTPGF+ + K+ L FPE
Sbjct: 183 NMETGAISSKIERGKHTTRHTELFPVDADSYIMDTPGFSSLYVNDFEKEELKYYFPE 239
>gi|116071785|ref|ZP_01469053.1| GTPase EngC [Synechococcus sp. BL107]
gi|116065408|gb|EAU71166.1| GTPase EngC [Synechococcus sp. BL107]
Length = 300
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 130/243 (53%), Gaps = 24/243 (9%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
LLC R+ L V VGD+V V +ID R ++ V R + + PPVANV ++
Sbjct: 30 ARLLCTRRSRLTHRGTEVNVGDRVRVDAIDAKQARAVVAEVSPRQSWLTRPPVANVSLVV 89
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
+ +++QP + +RFL+ AE TG+ + L L KV+LV E L RL WGY+PL
Sbjct: 90 VALAVEQPAFDLDQASRFLLTAERTGLDVQLVLTKVDLVSAEALTQLCERLRGWGYDPLP 149
Query: 142 CSVESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S ES G++ L ++L+ T V+ GPSGVGKSSL+N L PH S
Sbjct: 150 LSSESGSGMEVLQEQLQSTTLAVLCGPSGVGKSSLLNNL--LPHLS-------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
RVG VS + RG+HTTRHV L P+ +ADTPGFN+P L L F
Sbjct: 194 ------LRVGAVSGRLQRGRHTTRHVELFPIGDQARVADTPGFNRPELPD-DPHELGVLF 246
Query: 261 PEV 263
PE+
Sbjct: 247 PEL 249
>gi|37523837|ref|NP_927214.1| hypothetical protein glr4268 [Gloeobacter violaceus PCC 7421]
gi|35214842|dbj|BAC92209.1| glr4268 [Gloeobacter violaceus PCC 7421]
Length = 343
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 127/239 (53%), Gaps = 24/239 (10%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+LC RA LKK + VLVGD+V V ID RG+I R + + PP+AN +L++
Sbjct: 26 VLCTRRARLKKTGQSVLVGDRVEVAEIDSASGRGVIAATCARRSVLSKPPIANCTGVLVV 85
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P +P L+RFLV E+ + + + LNK++ V E ++ + + WGY S
Sbjct: 86 FALSEPAYDPALLSRFLVHIEAEDLGVIVCLNKIDEVPPEAVDGVAAAVGGWGYTVRPVS 145
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ GL +L L T V+ GPSG GKSSL+N L P L
Sbjct: 146 ARTGAGLAALRAELAG-TYVLAGPSGAGKSSLLNHL----------------HPGLA--- 185
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVG++S + GRG+HTTRHV L L+ +AD PGFNQ L + + LA FPE
Sbjct: 186 ---LRVGDISARLGRGRHTTRHVELFALNAEALVADAPGFNQLE-LTLAPELLAGYFPE 240
>gi|15895006|ref|NP_348355.1| ribosome-associated GTPase [Clostridium acetobutylicum ATCC 824]
gi|38257739|sp|Q97IC1.1|RSGA_CLOAB RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|15024696|gb|AAK79695.1|AE007682_5 Predicted GTPase (YLOQ B.subtilis ortholog) [Clostridium
acetobutylicum ATCC 824]
Length = 288
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 128/223 (57%), Gaps = 26/223 (11%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV I ++ +G+IE + R+ +++ PPV+NV ++FS+ P+ L +F
Sbjct: 38 IVGDKV---DITVINGKGVIEKIHPRTNKLIRPPVSNVTQAFIVFSIVNPEFSSDLLNKF 94
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
L+ E I + + +NK++LV+EE+L K+ L+ GYE F + +SK+G++ L + L+D
Sbjct: 95 LILCEFNNIKVKVCINKIDLVNEELLTPIKNLLNNTGYELKFLNAKSKIGINELKESLKD 154
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
TV+ GPSGVGKS+L+N++ S + G++S K RG
Sbjct: 155 NITVVCGPSGVGKSTLMNSIAGS----------------------NVMKTGDISEKLKRG 192
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
K+TTRH L+ ++ GG++ DTPGF+ L + + L FPE
Sbjct: 193 KNTTRHSELIEVA-GGFIVDTPGFSSLDLNFIDRYELKDLFPE 234
>gi|336422117|ref|ZP_08602271.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
5_1_57FAA]
gi|336009407|gb|EGN39401.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
5_1_57FAA]
Length = 292
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 121/237 (51%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K K + LVGD V++ ++D + G I V +R E++ P VAN+D L++F+
Sbjct: 25 CKAKGAFRKEKIKPLVGDNVIIEALDEEQKTGNITEVLKRKNELVRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV ES IP+ L NK ++ + + ++ GY +F S
Sbjct: 85 IVRPNPHFNLLDRFLVMMESKEIPVILCFNKEDIATDPQVKELEAIYENCGYPLIFTSAL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+D + + LR +TT I GPSGVGKSS+IN L+ P A
Sbjct: 145 KDKNIDQVKEVLRGKTTAIAGPSGVGKSSIINILQ--PEA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G +S+K RGKHTTRH L P+ Y+ DTPGF+ + K+ L FPE
Sbjct: 183 NMETGAISSKIERGKHTTRHTELFPVDADSYIMDTPGFSSLYVNDFEKEELKYYFPE 239
>gi|210622420|ref|ZP_03293152.1| hypothetical protein CLOHIR_01100 [Clostridium hiranonis DSM 13275]
gi|210154236|gb|EEA85242.1| hypothetical protein CLOHIR_01100 [Clostridium hiranonis DSM 13275]
Length = 293
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 126/237 (53%), Gaps = 23/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + +D +++G++E + +R TE++ PP+ANVD L++F+
Sbjct: 25 CKARGIFRKQKITPLVGDNVEISIVDEENKKGVVETIEERETELVRPPIANVDKALIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RF+V AE + + + K++L D+ L+ GY+ + S E
Sbjct: 85 VKDPKPNLSLLDRFIVHAERENLEIVIIFTKMDL-DDGSLDELVEIYEKAGYKVIPVSSE 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + L+ T V GPSGVGKSSL+N +D F+
Sbjct: 144 KHINIDKVKEELKGNTVVFAGPSGVGKSSLLNQ------------IDESFQ--------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G VS K GRG+HTTRH LL L GG +ADTPGF+ L + + L + F E
Sbjct: 183 -LKTGTVSEKIGRGRHTTRHAELLKLECGGIVADTPGFSSLELDGIDEMELKEYFIE 238
>gi|78211581|ref|YP_380360.1| GTPase EngC [Synechococcus sp. CC9605]
gi|123579049|sp|Q3ANM7.1|RSGA_SYNSC RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|78196040|gb|ABB33805.1| GTPase EngC [Synechococcus sp. CC9605]
Length = 304
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 128/241 (53%), Gaps = 24/241 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID R ++ V R + + PPVANV + ++
Sbjct: 36 LLCTRRTRLSHRGEAVYVGDRVRVEAIDPGQGRAVVAEVEPRHSFLTRPPVANVSLVAVV 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
+++QP +P +RFL+ AE TG+ + L L K +L+ L +RL WGY+PL S
Sbjct: 96 LAVEQPSFDPDQASRFLLTAERTGLEVILLLTKTDLLSAAALERLVTRLQGWGYDPLAFS 155
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ G+D+L QRL Q +V+ GPSGVGKSSL+N L D+
Sbjct: 156 SAAGTGIDALRQRLAGAQLSVLCGPSGVGKSSLLNQL--------CPDL----------- 196
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
R VS + RG+HTTRHV L PL +ADTPGFN+P L + Q L FPE
Sbjct: 197 ---QLRTAAVSGRLQRGRHTTRHVELFPLGPSARVADTPGFNRPDLPE-DPQELGVLFPE 252
Query: 263 V 263
+
Sbjct: 253 L 253
>gi|403234844|ref|ZP_10913430.1| GTPase RsgA [Bacillus sp. 10403023]
Length = 294
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 134/254 (52%), Gaps = 28/254 (11%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++ G + C R + +K K LVGD VV + + D G I V +R E++ PP++N
Sbjct: 17 HNEDGEVIQCRGRGVFRKNKVTPLVGDNVVFQAENETD--GYILEVLERKNELVRPPISN 74
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
VD +L+FS +P P L RFLV ES I + ++K +L+ ++ + + +
Sbjct: 75 VDQAILVFSAIKPDFSPLLLDRFLVLVESNDIKPIICISKTDLISDDAFKEIQQYANMYK 134
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY+ + S + + GLD L+ L +Q +V G SGVGKSSL+N LR
Sbjct: 135 EIGYQVILTSTKEREGLDKLMPLLDNQISVFAGQSGVGKSSLLNTLR------------- 181
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
P L + + E+S+ GRGKHTTRHV L+ + G G +ADTPGF+ L +
Sbjct: 182 ---PDL------ELKTNEISSSLGRGKHTTRHVELIEV-GNGLVADTPGFSSLEFLTIEL 231
Query: 254 QSLAQTFPEVCAVG 267
+ L+ FPE+ G
Sbjct: 232 EELSYCFPEIYDAG 245
>gi|212639611|ref|YP_002316131.1| ribosome-associated GTPase [Anoxybacillus flavithermus WK1]
gi|212561091|gb|ACJ34146.1| Predicted GTPase [Anoxybacillus flavithermus WK1]
Length = 329
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 132/243 (54%), Gaps = 28/243 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + +R G I +VF+R E++ PP+AN+D +L+FS
Sbjct: 61 CRGRGVFRKRKVTPLVGDYVSFQVEN--EREGYILDVFERKNELVRPPIANIDQAILVFS 118
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC 142
+P P L RFLV E+ I + ++K++LVD+E + + GY+ L
Sbjct: 119 AVEPDFSPGLLDRFLVLIEAKNIRPMIVVSKMDLVDDETKPRIEQYIRDYRQIGYDVLEV 178
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SV+++ G+D+LL L + +V G SGVGKSSL+NALR P L K
Sbjct: 179 SVKTRAGVDALLPYLEGKVSVFAGQSGVGKSSLLNALR----------------PGLQLK 222
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++S GRGKHTTRHV + + GGG++ADTPGF+ ++ + L FPE
Sbjct: 223 ------TGDISHHLGRGKHTTRHVEFIEI-GGGFVADTPGFSALEFDEIELEQLPLCFPE 275
Query: 263 VCA 265
A
Sbjct: 276 FVA 278
>gi|427703563|ref|YP_007046785.1| ribosome small subunit-dependent GTPase A [Cyanobium gracile PCC
6307]
gi|427346731|gb|AFY29444.1| ribosome small subunit-dependent GTPase A [Cyanobium gracile PCC
6307]
Length = 362
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/243 (39%), Positives = 136/243 (55%), Gaps = 24/243 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L K +V VGD+V V ++DW RRG + + R + + P VANV+ ++++
Sbjct: 34 LLCTRRTRLDKSGLQVCVGDRVTVAAVDWRARRGAVVGLEPRRSLLERPAVANVNRVVVV 93
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++ +P L+P LTRFL+ AE+TG P+ + L+K +L+ + W RL WGY + S
Sbjct: 94 VAVAEPGLDPLQLTRFLITAEATGQPVQVVLSKADLLPPAEVGAWCRRLEGWGYGTVAIS 153
Query: 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S GL+ L ++L V+ GPSGVGKSSL+NAL P L
Sbjct: 154 TRSGEGLEILRRQLAAPGIAVLCGPSGVGKSSLLNAL----------------APAL--- 194
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ RV VS + RG+HTTRHV L ++ +AD+PGFN P+ L QSLA FPE
Sbjct: 195 ---ELRVATVSGRLRRGRHTTRHVELFSVAPEALVADSPGFNTPA-LPADPQSLAAAFPE 250
Query: 263 VCA 265
+ A
Sbjct: 251 LLA 253
>gi|421873669|ref|ZP_16305281.1| ribosome small subunit-dependent GTPase A [Brevibacillus
laterosporus GI-9]
gi|372457456|emb|CCF14830.1| ribosome small subunit-dependent GTPase A [Brevibacillus
laterosporus GI-9]
Length = 299
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 134/259 (51%), Gaps = 36/259 (13%)
Query: 4 IVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIEN 61
+ Q+ P R C R L KK ++ LVGD VV + + DR G +
Sbjct: 16 VADQANPERIVQCR----------ARGLFKKKGAKITPLVGDWVVFEAPN--DRDGYVME 63
Query: 62 VFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ +R++E++ P +ANVD +L+FS +P + P L +FLV E GI + + K +L++
Sbjct: 64 IEERTSELVRPSIANVDLAVLVFSAKEPDMSPLLLDKFLVHTEHAGIDAIIVITKADLLE 123
Query: 122 EEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
E+ + + GY + S+ + G++ + + L + V G SGVGKSSL+NA+
Sbjct: 124 EQDCSRLVAEYEKVGYRVIPTSILDQRGVEQVREELIGKLAVFAGQSGVGKSSLLNAI-- 181
Query: 182 SPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241
F I + GE+S K GRG+HTTRHV LLPL GGY+ADTP
Sbjct: 182 -------------FPGI-------SLQTGEISQKLGRGRHTTRHVELLPLKEGGYVADTP 221
Query: 242 GFNQPSLLKVTKQSLAQTF 260
GF+ + +T+ LAQ F
Sbjct: 222 GFSSLDFINMTELDLAQAF 240
>gi|336436834|ref|ZP_08616544.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336006653|gb|EGN36686.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 299
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 122/237 (51%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K + LVGD+V + +D ++ G I V R E++ P VAN+D L++F+
Sbjct: 32 CKARGVFRKEKMKPLVGDEVEIEVLDETEKTGNIIQVLPRKNELIRPAVANIDQALVVFA 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK L RFLV E IP+ L NK +L +E+ L ++ GY +F S
Sbjct: 92 VTDPKPHYNLLDRFLVMMERKEIPVVLCFNKQDLSEEKELQELEAVYGPCGYPVIFTSAR 151
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ ++ + + LR +TT I GPSGVGKSSLIN L+ DV
Sbjct: 152 RQENIEQVKELLRGKTTTIAGPSGVGKSSLINLLQ--------PDV-------------- 189
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + G Y+ DTPGF+ + K+ L FPE
Sbjct: 190 RMETGSISKKIARGKHTTRHSELILVEKGTYIIDTPGFSSLYVNDFEKEELKAYFPE 246
>gi|153855361|ref|ZP_01996510.1| hypothetical protein DORLON_02524 [Dorea longicatena DSM 13814]
gi|149752181|gb|EDM62112.1| ribosome small subunit-dependent GTPase A [Dorea longicatena DSM
13814]
Length = 292
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 123/237 (51%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V + +D +++G I + R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRKEKIKPLVGDNVEIEVLDESEKKGNIVKILPRQNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV ES IP+ L NK ++ + + + T GY +F S +
Sbjct: 85 ITKPNPHFNLLDRFLVMMESKEIPVVLCFNKEDIATDPQIKELEEIYETCGYPMVFVSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G++ + + L+ +TT I GPSGVGKSS+IN L+ P A
Sbjct: 145 EERGIEKIRELLKGKTTAIAGPSGVGKSSIINILQ--PDA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G +STK RGKHTTRH L + Y+ DTPGF+ + K+ L FPE
Sbjct: 183 EMETGAISTKIERGKHTTRHSELFAIDEDSYIMDTPGFSSLYVNDYEKEELKYLFPE 239
>gi|346306743|ref|ZP_08848897.1| ribosome small subunit-dependent GTPase A [Dorea formicigenerans
4_6_53AFAA]
gi|345908101|gb|EGX77769.1| ribosome small subunit-dependent GTPase A [Dorea formicigenerans
4_6_53AFAA]
Length = 292
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 123/237 (51%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K++ LVGD V + + V++ G I N+F+R E++ P VAN+D L++F+
Sbjct: 25 CKAKGIFRKDKKKPLVGDDVEIEVLSEVEKTGSIINIFERKNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L RFLV ++ IP+ L NK ++ EE L+ G + +F S +
Sbjct: 85 AAKPSPHFNLLDRFLVMMQTKEIPVILCFNKEDIASEEKLSELAEIYEKCGCQLIFVSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +++L + L +TT I GPSGVGKSS+IN L +P A
Sbjct: 145 EEKNMETLRRMLEGKTTAIAGPSGVGKSSIINFL--NPKA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G +S K RGKHTTRH L + Y+ DTPGF+ + K+ L FPE
Sbjct: 183 NMETGSISRKIERGKHTTRHSELFMIGEDSYIMDTPGFSSLYVNDFEKEELKYYFPE 239
>gi|166032712|ref|ZP_02235541.1| hypothetical protein DORFOR_02427 [Dorea formicigenerans ATCC
27755]
gi|166027069|gb|EDR45826.1| ribosome small subunit-dependent GTPase A [Dorea formicigenerans
ATCC 27755]
Length = 292
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 123/237 (51%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K++ LVGD V + + V++ G I N+F+R E++ P VAN+D L++F+
Sbjct: 25 CKAKGIFRKDKKKPLVGDDVEIEVLSEVEKTGSIINIFERKNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L RFLV ++ IP+ L NK ++ EE L+ G + +F S +
Sbjct: 85 AAKPSPHFNLLDRFLVMMQTKEIPVILCFNKEDIASEEKLSELAEIYEKCGCQLIFVSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +++L + L +TT I GPSGVGKSS+IN L +P A
Sbjct: 145 EEKNMETLRRMLEGKTTAIAGPSGVGKSSIINLL--NPKA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G +S K RGKHTTRH L + Y+ DTPGF+ + K+ L FPE
Sbjct: 183 NMETGSISRKIERGKHTTRHSELFMIGEDSYIMDTPGFSSLYVNDFEKEELKYYFPE 239
>gi|300867358|ref|ZP_07112015.1| ribosome-associated GTPase (fragment) [Oscillatoria sp. PCC 6506]
gi|300334664|emb|CBN57183.1| ribosome-associated GTPase (fragment) [Oscillatoria sp. PCC 6506]
Length = 202
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 91/127 (71%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ LKKI ++V+VGD+VVV DW RG I VF R TE+ PP+AN D +LL+
Sbjct: 60 LLCTRRSRLKKIGQQVMVGDRVVVEEPDWAGGRGAIAEVFPRRTELNRPPIANADQILLV 119
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ +P LEP AL+RFLV+AESTG+ ++L+LNK +LV + W+ RL WGYEP+F S
Sbjct: 120 FALVEPDLEPIALSRFLVKAESTGLAVSLSLNKCDLVTPQQQEQWRDRLSNWGYEPVFIS 179
Query: 144 VESKLGL 150
V + +GL
Sbjct: 180 VHTGVGL 186
>gi|153809818|ref|ZP_01962486.1| hypothetical protein RUMOBE_00199 [Ruminococcus obeum ATCC 29174]
gi|149833996|gb|EDM89076.1| ribosome small subunit-dependent GTPase A [Ruminococcus obeum ATCC
29174]
Length = 292
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 118/237 (49%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K ++ LVGD V + +D ++ G + + R ++ P VANVD ++F+
Sbjct: 25 CKAKGIFRKDNQKPLVGDNVEITILDQQEQTGNLIRILPRKNSLIRPAVANVDQAFVIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
++ PK L RFL+ E +P + NK +L EE T GY+ + S
Sbjct: 85 LENPKPNFMLLDRFLIMMEQAEVPAVICFNKKDLASEEETRTLCEIYRNCGYQVILSSAL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K GLD + + L+ +TTV+ GPSGVGKSSL N L+
Sbjct: 145 EKEGLDEIHRILKGKTTVVAGPSGVGKSSLTNLLQGEVQME------------------- 185
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S K RG+HTTRH ++P+ +L DTPGF+ L+ + +Q L FPE
Sbjct: 186 ---TGEISRKLKRGRHTTRHSQVIPVGEDTFLMDTPGFSSLYLMNMEEQDLKNYFPE 239
>gi|87123325|ref|ZP_01079176.1| GTPase EngC [Synechococcus sp. RS9917]
gi|86169045|gb|EAQ70301.1| GTPase EngC [Synechococcus sp. RS9917]
Length = 300
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 139/245 (56%), Gaps = 24/245 (9%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79
+G+ LLC R L V VGD V V +ID R ++ +V RS+ + PPVANV
Sbjct: 28 SGLRLLCTRRTRLAHRGAAVHVGDHVWVEAIDRRQARAVVASVEPRSSWLARPPVANVTA 87
Query: 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEP 139
++++ +++QP +P +RFL+ AE TG+ + + L+K +L+ EE L RL WGY
Sbjct: 88 VVVVLAVEQPAFDPDQASRFLLTAEQTGLAVQVLLSKSDLIPEEPLRLLVQRLQGWGYGV 147
Query: 140 LFCSVESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
L S ++ +GLD+L +L Q +V+ GPSGVGKSSL+NAL P
Sbjct: 148 LPVSSQTGMGLDTLRSQLACQPLSVLCGPSGVGKSSLLNAL----------------IPQ 191
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
L + RVG VS + RG+HTTRHV L PL+ G +ADTPGFN+P L +L
Sbjct: 192 L------ELRVGAVSGRLQRGRHTTRHVELHPLASGARVADTPGFNRPE-LPADAHNLEV 244
Query: 259 TFPEV 263
FPE+
Sbjct: 245 LFPEL 249
>gi|407474131|ref|YP_006788531.1| ribosome biogenesis GTPase RsgA [Clostridium acidurici 9a]
gi|407050639|gb|AFS78684.1| putative ribosome biogenesis GTPase RsgA [Clostridium acidurici 9a]
Length = 291
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 138/238 (57%), Gaps = 23/238 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R L +K K + VGD+V++ D ++ G +E +F+R+TE++ PPV+NV+ +++F+
Sbjct: 25 CRARGLFRKEKIKPQVGDRVLIRVNDQ-NKTGYVEKIFERTTELIRPPVSNVNQAIIVFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P + L RFL+ A + + + LNK++L EE + GY+ + S +
Sbjct: 84 IKKPDPNLWLLDRFLLLASCQNLDVVICLNKIDLATEEEVKEIYDIYSKSGYKIITTSNK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G+D + + L+D+ TV GPSGVGKS+L+N++ +P L K
Sbjct: 144 DNIGIDEIREILKDKITVFAGPSGVGKSTLLNSI----------------QPNLKLK--- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
GE+STK+ RGKHTTRH L+ L GG++ DTPGF+ L +T+++L + F ++
Sbjct: 185 ---TGEISTKTSRGKHTTRHTELIELDKGGFVLDTPGFSSLDLDFLTEETLEEHFHDI 239
>gi|337736947|ref|YP_004636394.1| ribosome-associated GTPase [Clostridium acetobutylicum DSM 1731]
gi|384458454|ref|YP_005670874.1| ribosome-associated GTPase [Clostridium acetobutylicum EA 2018]
gi|325509143|gb|ADZ20779.1| ribosome-associated GTPase [Clostridium acetobutylicum EA 2018]
gi|336292570|gb|AEI33704.1| ribosome-associated GTPase [Clostridium acetobutylicum DSM 1731]
Length = 288
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 127/223 (56%), Gaps = 26/223 (11%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV I + +G+IE + R+ +++ PPV+NV ++FS+ P+ L +F
Sbjct: 38 IVGDKV---DITVKNGKGVIEKIHPRTNKLIRPPVSNVTQAFIVFSIVNPEFSSDLLNKF 94
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
L+ E I + + +NK++LV+EE+L K+ L+ GYE F + +SK+G++ L + L+D
Sbjct: 95 LILCEFNNIKVKVCINKIDLVNEELLTPIKNLLNNTGYELKFLNAKSKIGINELKESLKD 154
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
TV+ GPSGVGKS+L+N++ S + G++S K RG
Sbjct: 155 NITVVCGPSGVGKSTLMNSIAGS----------------------NVMKTGDISEKLKRG 192
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
K+TTRH L+ ++ GG++ DTPGF+ L + + L FPE
Sbjct: 193 KNTTRHSELIEVA-GGFIVDTPGFSSLDLNFIDRYELKDLFPE 234
>gi|358063781|ref|ZP_09150383.1| ribosome small subunit-dependent GTPase A [Clostridium hathewayi
WAL-18680]
gi|356698029|gb|EHI59587.1| ribosome small subunit-dependent GTPase A [Clostridium hathewayi
WAL-18680]
Length = 291
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 120/237 (50%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + K + LVGD V + +D G I+ + RS ++ P VAN+D L++F+
Sbjct: 24 CKARGVFRNRKLKPLVGDNVEITVLDEETLEGNIDEILPRSNTLVRPAVANIDQALVVFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P L +FLV E IP+T+ NK++L DE +NT++S GY LF S
Sbjct: 84 ITHPSPNLNLLDKFLVMMERLEIPVTIVFNKIDLTDEVEMNTYRSIYEPAGYRVLFASAS 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G++ + +R +TTV+ GPSGVGKSSL N L+ P A+
Sbjct: 144 DGDGMEDIRALIRGKTTVLAGPSGVGKSSLTNILQ--PLAA------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L + Y+ DTPGF+ + + + L FPE
Sbjct: 183 -METGAISEKIQRGKHTTRHSELFFVEEDTYMMDTPGFSSMYVEDMQAEELKHYFPE 238
>gi|282850144|ref|ZP_06259523.1| ribosome small subunit-dependent GTPase A [Veillonella parvula ATCC
17745]
gi|282579637|gb|EFB85041.1| ribosome small subunit-dependent GTPase A [Veillonella parvula ATCC
17745]
Length = 287
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 123/245 (50%), Gaps = 29/245 (11%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D TG C VR LK+ + +LVGD+V + G +E++ +R ++ P VAN+
Sbjct: 18 DDTGTIHECKVRGRLKQGRYSLLVGDRVTIS------EDGFVESIHERHNSMVRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++L+ + +P + L + LV E IP+ L +NK +L+D E T + GY
Sbjct: 72 DQVVLVVAAHEPDINELLLNKMLVMIEHADIPIVLCINKCDLMDSET-ETMVDLYKSIGY 130
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
E L S + +G+D L L+ + T GPSGVGKSSL+NA VD F
Sbjct: 131 EVLMTSTYNMIGIDDLRHVLQHKVTAFAGPSGVGKSSLLNA------------VDPKFA- 177
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ GEVS K RGKHTTRH SL L ++ DTPGF+ V+ + L
Sbjct: 178 ---------FQTGEVSDKIKRGKHTTRHASLYSLDADSFIMDTPGFSAIEFNDVSLERLP 228
Query: 258 QTFPE 262
FPE
Sbjct: 229 TLFPE 233
>gi|307244476|ref|ZP_07526585.1| ribosome small subunit-dependent GTPase A [Peptostreptococcus
stomatis DSM 17678]
gi|306492169|gb|EFM64213.1| ribosome small subunit-dependent GTPase A [Peptostreptococcus
stomatis DSM 17678]
Length = 299
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 124/238 (52%), Gaps = 23/238 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C VR + +K LVGD+V + ID D++G IE +++R +E++ PP+ANVD +L+ FS
Sbjct: 25 CKVRGIFRKKGLSPLVGDRVAISIIDEADKKGNIEKIYERKSELVRPPIANVDKVLITFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL-VDEEVLNTWKSRLHTWGYEPLFCSV 144
+ +P L RF+V +E + + + L KV+L D +++ S GY+ + SV
Sbjct: 85 VKEPNPNMVLLDRFIVFSEKENLDIRIILTKVDLDEDGSIVDRIVSDYERIGYKVIPVSV 144
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
E+ G+D + Q L +V G SGVGKSS++NA+ A
Sbjct: 145 ETGQGIDQVRQELEGCISVFAGQSGVGKSSILNAIEPGFKIDTA---------------- 188
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S K GRGKHTTRH L L +ADTPGF+ L + + L + F E
Sbjct: 189 ------EISQKLGRGKHTTRHSELYKLGPNAIVADTPGFSSFELTDIEIEELQEYFIE 240
>gi|433446074|ref|ZP_20410205.1| ribosome small subunit-dependent GTPase A [Anoxybacillus
flavithermus TNO-09.006]
gi|432000819|gb|ELK21711.1| ribosome small subunit-dependent GTPase A [Anoxybacillus
flavithermus TNO-09.006]
Length = 293
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 131/240 (54%), Gaps = 28/240 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + +R G I +VF+R E++ PP+AN+D +L+FS
Sbjct: 25 CRGRGVFRKRKVTPLVGDYVSFQAEN--EREGYILDVFERKNELVRPPIANIDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E+ I + ++K++LVD++ + + + GYE
Sbjct: 83 AVEPDFSPGLLDRFLVLIEAKDIRPLIVVSKMDLVDDDTKPRIEQYIRDYRQIGYEVFEV 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SV+++ G+D+LL + +V G SGVGKSSL+NALR P L K
Sbjct: 143 SVKTRAGIDALLPYFEGKVSVFAGQSGVGKSSLLNALR----------------PNLQLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++S GRGKHTTRHV L+ + GGG++ADTPGF+ + + L FPE
Sbjct: 187 ------TGDISHHLGRGKHTTRHVELIEI-GGGFVADTPGFSALEFDDIELEQLPLCFPE 239
>gi|317121762|ref|YP_004101765.1| ribosome small subunit-dependent GTPase A [Thermaerobacter
marianensis DSM 12885]
gi|315591742|gb|ADU51038.1| ribosome small subunit-dependent GTPase A [Thermaerobacter
marianensis DSM 12885]
Length = 303
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 135/255 (52%), Gaps = 36/255 (14%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG--MIENVFQRSTEILDPPVA 75
D TG LLC +R L++ VL GD+V V V + G IE V R ++ PP+A
Sbjct: 21 DDTGEVLLCALRGRLRRQAGDVLTGDRVEV-----VLQPGGAAIERVLPRRNRLVRPPIA 75
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRL 132
NVD +LL+ S+ P P + R LV+AE+ +P+ L K++LV ++ L +RL
Sbjct: 76 NVDRVLLIQSLADPDPVPILMDRVLVQAEALELPVVLCFTKLDLVVKSPDDPLPEPSARL 135
Query: 133 ----HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
GY + GLD+L L++ TV+ GPSG GKS+L+NAL+ +
Sbjct: 136 VDGYRRAGYPVHLVAAPRGWGLDALAAALKEGATVLAGPSGAGKSTLLNALQPGLQLA-- 193
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
GEVS K GRG+HTTRHV+LLPL+ GG++ADTPGF++ L
Sbjct: 194 --------------------TGEVSRKLGRGRHTTRHVALLPLAEGGWVADTPGFSRVDL 233
Query: 249 LKVTKQSLAQTFPEV 263
+ + L +PE+
Sbjct: 234 PDLEPEELGDLWPEI 248
>gi|338813392|ref|ZP_08625521.1| ribosome small subunit-dependent GTPase A [Acetonema longum DSM
6540]
gi|337274751|gb|EGO63259.1| ribosome small subunit-dependent GTPase A [Acetonema longum DSM
6540]
Length = 292
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 134/260 (51%), Gaps = 27/260 (10%)
Query: 3 VIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENV 62
VIV+ N KT ++C +R KK + +LVGD+V G + +G+IE +
Sbjct: 5 VIVKAYNSYYYVQDNHKT---IMCTLRGRFKKERFSLLVGDRV--GYEITNEDKGVIEEI 59
Query: 63 FQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE 122
R + ++ P VANVD ++L F+ P + + RFLV AE + + + L +NK++ D
Sbjct: 60 LPRQSMLIRPMVANVDQVVLAFAAANPDINTVLIDRFLVLAELSNLEIVLCINKMDYADN 119
Query: 123 EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182
+ +++ + GY L S ++ GLD+L RL D+ T GPSGVGKS+L+NAL
Sbjct: 120 QEVDSIIALYRNIGYTVLPLSAKTGWGLDALRDRLYDKITAFAGPSGVGKSTLLNAL--- 176
Query: 183 PHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
+P L G VS K GRGKHTTR+ LLP + G++ DTPG
Sbjct: 177 -------------QPGLALA------TGSVSEKIGRGKHTTRYAELLPFANSGFVVDTPG 217
Query: 243 FNQPSLLKVTKQSLAQTFPE 262
F+ + ++ + F E
Sbjct: 218 FSLAEFNHLEEKHIMHCFRE 237
>gi|329926571|ref|ZP_08280984.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp. HGF5]
gi|328939112|gb|EGG35475.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp. HGF5]
Length = 302
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 126/239 (52%), Gaps = 26/239 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK LVGD V+ + + G ++ + RS++++ PPVANVD +LLFS
Sbjct: 34 CRARGIFKKKGISPLVGDHVMYSLTE--NGEGTVDEILPRSSQLIRPPVANVDLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE--EVLNTWKSRLHTWGYEPLFCS 143
+ +P L L +FLV E +G+ + L K +L D+ +VL K + GYE L S
Sbjct: 92 VKEPDLSLHLLDKFLVHIEHSGLEALICLTKQDLADDSDDVLEQVKRQYEEIGYEVLITS 151
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+G D + RL + +V G SGVGKSSL+NAL P S
Sbjct: 152 SLQGIGTDEVKDRLAGRISVFSGQSGVGKSSLLNALM--PGLS----------------- 192
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S + GRG+HTTRHV L+ L GGY+ADTPGF+Q L++ + L+ F E
Sbjct: 193 ---LETSEISLRLGRGRHTTRHVELIELDNGGYVADTPGFSQLDFLELGVEELSTCFKE 248
>gi|187933227|ref|YP_001885420.1| ribosome-associated GTPase [Clostridium botulinum B str. Eklund
17B]
gi|254766360|sp|B2THS4.1|RSGA_CLOBB RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|187721380|gb|ACD22601.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum B
str. Eklund 17B]
Length = 290
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 125/238 (52%), Gaps = 27/238 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD VV I + +G+IE++ +RS+E+L P VAN+ ++F+
Sbjct: 24 CKARGKFRHKDVKPMVGDNVV---IQVENGKGVIESIEKRSSELLRPAVANISLAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FLV E I + LNKV+LV EE K R++ GYE L+ + +
Sbjct: 81 IKSPDINFDLLNKFLVLCEYNHIEAIVCLNKVDLVSEEERENVKKRINDIGYEVLYINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
LG D L +++ TV+ GPSG GKS+LIN L + H
Sbjct: 141 EGLGTDILKEKINGNITVLCGPSGAGKSTLINKLTNKEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQSLAQTFPE 262
G VS K GRGKHTTRH L+ +S GY+ DTPGF+ + + + K+ L FPE
Sbjct: 180 -MLTGIVSEKIGRGKHTTRHSELIEVS-NGYIVDTPGFSTLEIKELMNKEDLKYCFPE 235
>gi|451818114|ref|YP_007454315.1| putative ribosome biogenesis GTPase RsgA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784093|gb|AGF55061.1| putative ribosome biogenesis GTPase RsgA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 290
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 27/238 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD V +I+ +G+IE++ +R ++++ P VANV ++F+
Sbjct: 24 CKARGKFRHKDIKPMVGDDV---TIEIEKGKGVIEDIHKRKSQLVRPTVANVSLAFIVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FL+ E I + + LNK++LV +E K R++ GYE ++ + +
Sbjct: 81 VKNPDINFDLLNKFLILCEYNNIEVVVCLNKIDLVSDEEREEIKKRINDIGYEVVYINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G+D L+++++ TV+ GPSG GKS+LIN L + H
Sbjct: 141 KGIGIDGLVEKIKGNITVLCGPSGAGKSTLINKLSNKEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQSLAQTFPE 262
G+VS K GRGKHTTRH L+ +S GY+ DTPGF+ + + K SL FPE
Sbjct: 180 -METGKVSEKLGRGKHTTRHSELIDVS-DGYIVDTPGFSTLEIKDLMDKNSLKYCFPE 235
>gi|294791796|ref|ZP_06756944.1| ribosome small subunit-dependent GTPase A [Veillonella sp. 6_1_27]
gi|294457026|gb|EFG25388.1| ribosome small subunit-dependent GTPase A [Veillonella sp. 6_1_27]
Length = 287
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 122/245 (49%), Gaps = 29/245 (11%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D TG C VR LK+ + +LVGD+V + G +E++ +R ++ P VAN+
Sbjct: 18 DDTGTIHECKVRGRLKQGRYSLLVGDRVTIS------EDGFVESIHERHNSMVRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++L+ + +P + L + LV E IP+ L +NK +L+D E T + GY
Sbjct: 72 DQVVLVVAAHEPDINELLLNKMLVMIEHADIPIVLCINKCDLMDSET-ETMVDLYKSIGY 130
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
E L S + G+D L L+ + T GPSGVGKSSL+NA VD F
Sbjct: 131 EVLMTSTYNMTGIDDLRHVLQHKVTAFAGPSGVGKSSLLNA------------VDPKFA- 177
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ GEVS K RGKHTTRH SL L ++ DTPGF+ V+ + L
Sbjct: 178 ---------FQTGEVSDKIKRGKHTTRHASLYSLDADSFIMDTPGFSAIEFNDVSLERLP 228
Query: 258 QTFPE 262
FPE
Sbjct: 229 TLFPE 233
>gi|294793657|ref|ZP_06758794.1| ribosome small subunit-dependent GTPase A [Veillonella sp. 3_1_44]
gi|416998708|ref|ZP_11939377.1| ribosome small subunit-dependent GTPase A [Veillonella parvula
ACS-068-V-Sch12]
gi|294455227|gb|EFG23599.1| ribosome small subunit-dependent GTPase A [Veillonella sp. 3_1_44]
gi|333976861|gb|EGL77720.1| ribosome small subunit-dependent GTPase A [Veillonella parvula
ACS-068-V-Sch12]
Length = 287
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 126/248 (50%), Gaps = 35/248 (14%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D TG C VR LK+ + +LVGD+V + G +E++ +R ++ P VAN+
Sbjct: 18 DDTGTIHECKVRGRLKQGRYSLLVGDRVTIS------EDGFVESIHERHNSMVRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHT 134
D ++L+ + +P + L + LV E IP+ L +NK +L+D E +++ +KS
Sbjct: 72 DQVVLVVAAHEPDINELLLNKMLVMIEHADIPIVLCINKCDLMDSETKAMVDLYKS---- 127
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GYE L S + G+D L L+ + T GPSGVGKSSL+NA VD
Sbjct: 128 IGYEVLMTSTYNMTGIDDLRHVLQHKVTAFAGPSGVGKSSLLNA------------VDPK 175
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
F + GEVS K RGKHTTRH SL L ++ DTPGF+ V+ +
Sbjct: 176 FA----------FQTGEVSDKIKRGKHTTRHASLYSLDADSFIMDTPGFSAIEFNDVSLE 225
Query: 255 SLAQTFPE 262
L FPE
Sbjct: 226 RLPTLFPE 233
>gi|260434543|ref|ZP_05788513.1| ribosome small subunit-dependent GTPase A [Synechococcus sp. WH
8109]
gi|260412417|gb|EEX05713.1| ribosome small subunit-dependent GTPase A [Synechococcus sp. WH
8109]
Length = 304
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 122/226 (53%), Gaps = 24/226 (10%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTR 98
V VGD+V V +ID R ++ V R + + PPVANV + ++ +++QP +P +R
Sbjct: 51 VYVGDRVRVEAIDPGQGRAVVAEVEPRHSFLTRPPVANVSLVAVVLAVEQPSFDPDQASR 110
Query: 99 FLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
FL+ AE TG+ + L L K +L+ L +RL WGY+PL S + G+D+L QRL
Sbjct: 111 FLLTAERTGLEVILLLTKTDLLSAAALERLVTRLQGWGYDPLALSSAAGTGIDALRQRLA 170
Query: 159 D-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
Q +V+ GPSGVGKSSL+N LR AA VS +
Sbjct: 171 GAQLSVLCGPSGVGKSSLLNQLRPDLQLRTAA----------------------VSGRLQ 208
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
RG+HTTRHV L PL +ADTPGFN+P L Q L FPE+
Sbjct: 209 RGRHTTRHVELFPLGPSSRVADTPGFNRPDLPD-NPQELGVLFPEL 253
>gi|336426128|ref|ZP_08606141.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
gi|336011086|gb|EGN41054.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 3_1_57FAA_CT1]
Length = 291
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 120/245 (48%), Gaps = 23/245 (9%)
Query: 19 KTGVELL-CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
+TG ++ C + + +K K++ L GD V + +D I + R+ E++ P VANV
Sbjct: 16 QTGNQIYECKAKGIFRKDKKKPLPGDYVEIDILDETALTANISVILPRTNELIRPAVANV 75
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D L++ + P L RFLV E + + NK +LVDEE + + GY
Sbjct: 76 DQALVIMAAASPAPNLNLLDRFLVTMEQQKVECCICFNKQDLVDEEWKDKLRESYRNTGY 135
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
LF S GL+ L Q L +TT + GPSGVGKSSLIN L++
Sbjct: 136 RVLFTSARQGEGLEELCQILTGKTTTVAGPSGVGKSSLINRLQTGISME----------- 184
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
GE+STK RGKHTTRH L+ +S Y+ DTPGF+ L + K+ L
Sbjct: 185 -----------TGEISTKIERGKHTTRHSELIYVSEDTYIVDTPGFSSIELYGMEKEELQ 233
Query: 258 QTFPE 262
FPE
Sbjct: 234 DYFPE 238
>gi|296185406|ref|ZP_06853816.1| ribosome small subunit-dependent GTPase A [Clostridium
carboxidivorans P7]
gi|296050240|gb|EFG89664.1| ribosome small subunit-dependent GTPase A [Clostridium
carboxidivorans P7]
Length = 274
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 132/245 (53%), Gaps = 28/245 (11%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
DK VE C R + + +VGDKV I + +G+I+ ++ R +++ P VANV
Sbjct: 18 DKNVVE--CKARGKFRHNELTPMVGDKV---EITIKNGKGVIDKIYPRINKLIRPSVANV 72
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
L++F++ P++ L +FL+ E + + NK++LV +E +N + + GY
Sbjct: 73 TQALVVFALRNPEINEELLNKFLLSCEYNNLKAIVCFNKLDLVLQEEMNEIVEMVKSAGY 132
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
E LF + G+D + ++L+D TV+ GPSGVGKS+++N+
Sbjct: 133 ETLFLKAKEGYGIDLIREKLQDNVTVLCGPSGVGKSTILNS------------------- 173
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
I+G E GE+S K RGKHTTRH L+ + G G+L DTPGF+ + ++K+ L
Sbjct: 174 IMGE---EVMATGEISEKLRRGKHTTRHSELIDI-GNGFLVDTPGFSSLEIEFISKEDLQ 229
Query: 258 QTFPE 262
Q FPE
Sbjct: 230 QCFPE 234
>gi|347532277|ref|YP_004839040.1| GTPase [Roseburia hominis A2-183]
gi|345502425|gb|AEN97108.1| GTPase [Roseburia hominis A2-183]
Length = 296
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 118/237 (49%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V + +D G IE + R ++ P VAN+D L++F+
Sbjct: 29 CKAKGIFRNQKIKPLVGDNVTIAVLDEEQMLGNIEEILPRENALIRPAVANIDQALVIFA 88
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+PK L RFL+ E +P+T+ NK +L+ E L+ + GY ++ S
Sbjct: 89 AAKPKPNFNLLDRFLIMMEYQKVPVTICFNKCDLLTGEELHAFSDVYEQCGYPVVYTSAR 148
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D LL+RL + T + GPSGVGKSSLIN L+
Sbjct: 149 EQRGIDVLLERLEGKVTSVAGPSGVGKSSLINCLQPE----------------------R 186
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RG+HTTRH ++P+ Y+ DTPGF+ + + K+ L +PE
Sbjct: 187 QMETGAISRKIERGRHTTRHSEIIPIKEQTYIMDTPGFSTLDIPGLEKEDLWWYYPE 243
>gi|164687796|ref|ZP_02211824.1| hypothetical protein CLOBAR_01440 [Clostridium bartlettii DSM
16795]
gi|164603071|gb|EDQ96536.1| ribosome small subunit-dependent GTPase A [Clostridium bartlettii
DSM 16795]
Length = 293
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 122/237 (51%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + +D +++G++E + +R TE++ PP+ANV+ L++F+
Sbjct: 25 CRARGIFRKNKITPLVGDFVKISVVDEDNKKGVVEEIQERKTELVRPPIANVNKALIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P L RF+V AE + + + L K++L D+ K+ GY+ + S
Sbjct: 85 VKNPTPHLSLLDRFIVLAERENLEIVIILTKIDLDDDNTFEKIKNIYEPCGYKVIGVSNL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+D + + L+D T V GPSGVGKSSL+N + S+
Sbjct: 145 ENKNIDKVKEELKDNTVVFAGPSGVGKSSLLNQIDSNFQL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G+VS K RGKHTTRH L L GG +ADTPGF+ +L + L F E
Sbjct: 185 --KTGDVSDKIKRGKHTTRHAELFELKFGGMVADTPGFSSLTLDDIEDIDLKDYFIE 239
>gi|188587599|ref|YP_001920567.1| ribosome-associated GTPase [Clostridium botulinum E3 str. Alaska
E43]
gi|251778398|ref|ZP_04821318.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|254766359|sp|B2V4B8.1|RSGA_CLOBA RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|188497880|gb|ACD51016.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum E3
str. Alaska E43]
gi|243082713|gb|EES48603.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 290
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 124/238 (52%), Gaps = 27/238 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD V+ I + +G+IE++ +RS+E+L P VAN+ ++F+
Sbjct: 24 CKARGKFRHKDVKPMVGDNVI---IQVENGKGVIESIEKRSSELLRPAVANISLAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FLV E I + LNKV+LV EE K R++ GYE L+ + +
Sbjct: 81 IKSPDINFDLLNKFLVLCEYNHIEAIVCLNKVDLVSEEERENVKKRINDIGYEVLYINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
LG D L +++ TV+ GPSG GKS+LIN L H
Sbjct: 141 EGLGTDILKEKINGNITVLCGPSGAGKSTLINKLTDKEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQSLAQTFPE 262
G VS K GRGKHTTRH L+ +S GY+ DTPGF+ + + + K+ L FPE
Sbjct: 180 -MLTGIVSEKIGRGKHTTRHSELIEVS-NGYIVDTPGFSTLEIKELMEKEELKYCFPE 235
>gi|169831739|ref|YP_001717721.1| ribosome small subunit-dependent GTPase A [Candidatus Desulforudis
audaxviator MP104C]
gi|169638583|gb|ACA60089.1| ribosome small subunit-dependent GTPase A [Candidatus Desulforudis
audaxviator MP104C]
Length = 293
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 126/238 (52%), Gaps = 26/238 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R L+ + RVL GD+VVV S+ RG++E V R +E++ PPVAN D L++ S
Sbjct: 25 CTLRGKLR-TRGRVLAGDEVVVRSLS--GGRGVVEEVKPRRSEMVRPPVANADQALVVVS 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN-TWKSRLHTWGYEPLFCSV 144
+P L R LV E+ GI + + +NK++L N W GY L S
Sbjct: 82 FREPSPALNLLDRILVHCEAAGIRIVICVNKLDLAAPGAENEAWIETYRDAGYPTLVTSA 141
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ G+ +L + L + TV+ GPSG GKSSLINA+ +P L
Sbjct: 142 VTGEGVAALREALARRITVVAGPSGSGKSSLINAV----------------QPGL----- 180
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ R GE+S K RG+H TRHV LL L GGG++AD PGF+ L + + LA FPE
Sbjct: 181 -NLRTGEISPKLQRGRHVTRHVELLALEGGGWVADAPGFSVLRLEGIDRAELAGLFPE 237
>gi|410460749|ref|ZP_11314422.1| GTPase RsgA [Bacillus azotoformans LMG 9581]
gi|409926679|gb|EKN63835.1| GTPase RsgA [Bacillus azotoformans LMG 9581]
Length = 293
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 126/241 (52%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K LVGD VV + + + G I ++ +R E++ PP++NVD +L+FS
Sbjct: 25 CRGRGVFRKNGITPLVGDYVVFEAEN--ENEGYIMDIKERKNELVRPPISNVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL---NTWKSRLHTWGYEPLFC 142
+P P L RFLV ES I + + K++L+D E L N + S GY+ +F
Sbjct: 83 AVEPNFSPVLLDRFLVLIESNHITPVICITKMDLLDNESLEKINQYVSDYKQIGYDVIFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++ G++ L LRD+ +V G SGVGKSSL+NAL P L K
Sbjct: 143 SSKTMDGIEKLRPYLRDRISVFAGQSGVGKSSLLNALL----------------PELSLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S GRGKHTTRHV L+ GG +ADTPGF+ + + LA FPE
Sbjct: 187 ------TNEISNHLGRGKHTTRHVELIQFE-GGLVADTPGFSSLDFIDIEADELAHCFPE 239
Query: 263 V 263
+
Sbjct: 240 M 240
>gi|334340854|ref|YP_004545834.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum ruminis
DSM 2154]
gi|334092208|gb|AEG60548.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum ruminis
DSM 2154]
Length = 292
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 24/225 (10%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTR 98
LVGD+V V + ++ G I+ V R+TE+ P VANV+ +L+F++ P+ L R
Sbjct: 39 ALVGDRVKVTPVR--EKTGRIDEVLPRATELFRPAVANVEQAVLVFAVQNPEPNLTLLDR 96
Query: 99 FLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
FLV AES GI + LNK++L+ + W GY + S ++ G+++L Q L
Sbjct: 97 FLVLAESAGIQPLICLNKIDLLSGRREHHWLKLYRRIGYPTVTASSKTGEGVEALRQLLT 156
Query: 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218
T+V GPSGVGKSSL+NA++ W + GE+S K R
Sbjct: 157 GSTSVFAGPSGVGKSSLLNAVQP-----------GW-----------QLKTGEISHKLKR 194
Query: 219 GKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
GKHTTRHV LL L GGY+ D+PGF+ L ++ ++ L++ FPE+
Sbjct: 195 GKHTTRHVELLVLPSGGYVVDSPGFSSLDLPEMEREELSRYFPEM 239
>gi|116074299|ref|ZP_01471561.1| GTPase EngC [Synechococcus sp. RS9916]
gi|116069604|gb|EAU75356.1| GTPase EngC [Synechococcus sp. RS9916]
Length = 299
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 132/241 (54%), Gaps = 24/241 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID R ++ +V RS+ + PPVANV +++
Sbjct: 31 LLCTRRTRLSHRGAAVHVGDRVWVEAIDPQQGRAVVADVEPRSSWLTRPPVANVTAVVVA 90
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F+MDQP +P +RFL+ AE TG+ + + L K +L+ + RL WGY P+ S
Sbjct: 91 FAMDQPTFDPDQASRFLLTAEQTGLEVQVLLTKSDLLSSDQRQALVQRLEAWGYAPIAIS 150
Query: 144 VESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ GLD L +RL+ Q +V+ GPSGVGKSSL+N L P S
Sbjct: 151 STTGEGLDMLRERLQTQALSVLCGPSGVGKSSLLNGL--IPDLS---------------- 192
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVG VS + +G+HTTRHV L PL G +ADTPGFN+P L K +L FPE
Sbjct: 193 ----LRVGAVSGRLQKGRHTTRHVELHPLGQGARVADTPGFNRPDLPKQV-HNLEVLFPE 247
Query: 263 V 263
+
Sbjct: 248 L 248
>gi|404370893|ref|ZP_10976208.1| putative ribosome biogenesis GTPase RsgA [Clostridium sp.
7_2_43FAA]
gi|404301519|gb|EEH98186.2| putative ribosome biogenesis GTPase RsgA [Clostridium sp.
7_2_43FAA]
Length = 289
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 127/244 (52%), Gaps = 27/244 (11%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
K GV + C R + + +VGD V I+ + +G+IE++ RS+E++ P VANV
Sbjct: 18 KEGV-IECKARGKFRHKDMKPMVGDNV---DINVSNGKGVIEDIHDRSSELIRPTVANVT 73
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
++F++ P + L RFL+ E I + LNKV+L EE K +++ GY+
Sbjct: 74 QAFVVFAIKNPDINFDLLNRFLILCEYNNIKAIVCLNKVDLASEEEKEEVKKKINDIGYD 133
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
LF + + LG++ L +RL D TV+ GPSG GKS+LIN L + H
Sbjct: 134 VLFINAKKGLGIELLKERLSDNETVLCGPSGAGKSTLINTLINRTH-------------- 179
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
G VS K GRGKHTTRH L+ + GYL D+PGF+ + + K+ L
Sbjct: 180 --------METGVVSEKIGRGKHTTRHSELIEIE-NGYLVDSPGFSNIDISFMNKEELRY 230
Query: 259 TFPE 262
FPE
Sbjct: 231 CFPE 234
>gi|295109193|emb|CBL23146.1| ribosome small subunit-dependent GTPase A [Ruminococcus obeum
A2-162]
Length = 292
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 116/237 (48%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K ++ LVGD V + +D + G + + R ++ P VANVD ++F+
Sbjct: 25 CKAKGIFRKDNQKPLVGDNVEITVLDKQEHTGNLIRILPRKNSLIRPAVANVDQAFVIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
M+ PK L RFL+ E + +P + NK +L E+ + GY + S
Sbjct: 85 MENPKPNFMLLDRFLIMMEQSDVPAVICFNKKDLASEQEVTELYETYKNCGYHVILSSAL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K GL+ + + L+ +TTV+ GPSGVGKSSL N L+
Sbjct: 145 EKEGLEEIHEILKGKTTVVAGPSGVGKSSLTNLLQGEVQME------------------- 185
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S K RG+HTTRH ++P+ +L DTPGF+ L + +Q L FPE
Sbjct: 186 ---TGEISKKLKRGRHTTRHSQVIPVGENTFLMDTPGFSSLYLTDMEEQHLKDYFPE 239
>gi|229086414|ref|ZP_04218590.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-44]
gi|228696930|gb|EEL49739.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-44]
Length = 293
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 127/241 (52%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQAEN--PNEGYVLEVFGRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E + ++ S GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYASDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D+L L +V+ G SGVGKSS++N LR P L K
Sbjct: 143 SINTSESIDTLKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDLALK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 187 ------TNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTHCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|72383183|ref|YP_292538.1| GTPase EngC [Prochlorococcus marinus str. NATL2A]
gi|123773738|sp|Q46I43.1|RSGA_PROMT RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|72003033|gb|AAZ58835.1| GTPase EngC [Prochlorococcus marinus str. NATL2A]
Length = 312
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 130/245 (53%), Gaps = 30/245 (12%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+ LLC+ R+ L + VGD V V SID+ ++R ++ +V R + + P VANV +
Sbjct: 42 IRLLCIRRSKLNYQGLFIDVGDIVCVESIDYKNKRAVVSDVEPRQSFLKRPAVANVTLVS 101
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
+ S D+P + +RFL+ AE I + L K++L+ + L + ++ +WGY+ +
Sbjct: 102 ICISADEPLFDMEQTSRFLLTAECANIEPLIILTKIDLITKNDLILYINKFKSWGYDCIP 161
Query: 142 CSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINAL---RSSPHASDAADVDNWFEP 197
S+ + G+DSL++RLR + TV+ GPSGVGK+SLIN L S P +S
Sbjct: 162 VSIHNSQGIDSLIERLRKTKLTVLAGPSGVGKTSLINHLIPTVSLPTSS----------- 210
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
VS K RG HTTRHV L + G LADTPGFN+P ++ A
Sbjct: 211 --------------VSKKLKRGTHTTRHVELFAIGNGSLLADTPGFNRPEIV-CEPSDFA 255
Query: 258 QTFPE 262
FPE
Sbjct: 256 FLFPE 260
>gi|225574503|ref|ZP_03783113.1| hypothetical protein RUMHYD_02580 [Blautia hydrogenotrophica DSM
10507]
gi|225038290|gb|EEG48536.1| ribosome small subunit-dependent GTPase A [Blautia
hydrogenotrophica DSM 10507]
Length = 292
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 124/245 (50%), Gaps = 23/245 (9%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D+ GV C + + +K K + LVGD V + + ++ G + + R E++ P VANV
Sbjct: 18 DEAGV-YECKAKGIFRKNKVKPLVGDDVEIELLGQKEKVGNVIRIMPRKNELIRPAVANV 76
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D L++F+ QP+ L RFLV E IP+ + NK +LV E + GY
Sbjct: 77 DQALVIFAAAQPQPNFLLLDRFLVMMERQEIPVKICFNKKDLVSENECQSVCQIYSDCGY 136
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ ++ S + G + + Q LR +TTV+ GPSGVGKSSL N ++S
Sbjct: 137 DVVWTSALLQDGREEIRQLLRGKTTVVAGPSGVGKSSLTNLVQSEVQME----------- 185
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+GE+S K RGKHTTRH ++P+ G YL DTPGF+ L + ++ L
Sbjct: 186 -----------IGEISQKLKRGKHTTRHSEIIPVEPGTYLVDTPGFSSLYLENIEREELR 234
Query: 258 QTFPE 262
F E
Sbjct: 235 NYFTE 239
>gi|410584634|ref|ZP_11321736.1| ribosome small subunit-dependent GTPase A [Thermaerobacter
subterraneus DSM 13965]
gi|410504220|gb|EKP93732.1| ribosome small subunit-dependent GTPase A [Thermaerobacter
subterraneus DSM 13965]
Length = 304
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 32/247 (12%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+LC +R L++ VL GD+V + D IE V R ++ PP+ANVD +LL+
Sbjct: 28 ILCALRGRLRRQAGDVLTGDRV---EVALQDGGAAIERVLPRRNRLVRPPIANVDRVLLV 84
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRL----HTWG 136
S+ +P P + R +V+AE+ +P+ +A K++ V E+ L W +RL G
Sbjct: 85 QSLQEPDPVPILMDRVIVQAEAMDLPVVIAFTKLDRVARAPEDPLPGWAARLVEGYRLAG 144
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y + G++ L LR+ TV+ GPSG GKS+L+NAL+ + +
Sbjct: 145 YPVHLLAAPRGWGVEGLAAALREGVTVVAGPSGAGKSTLLNALQPGLNLA---------- 194
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
GEVS K GRG+HTTR V LLPL+GGG++ADTPGF++ L ++ + L
Sbjct: 195 ------------TGEVSRKLGRGRHTTRFVELLPLAGGGWVADTPGFSKLELPELEPEEL 242
Query: 257 AQTFPEV 263
+PE+
Sbjct: 243 GDLWPEI 249
>gi|238019371|ref|ZP_04599797.1| hypothetical protein VEIDISOL_01235 [Veillonella dispar ATCC 17748]
gi|237864070|gb|EEP65360.1| hypothetical protein VEIDISOL_01235 [Veillonella dispar ATCC 17748]
Length = 287
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 121/245 (49%), Gaps = 29/245 (11%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D +G C VR LKK + +LVGD+V + G +E++ R ++ P VAN+
Sbjct: 18 DDSGTVHECKVRGRLKKGRYSLLVGDRVTIS------EDGFVESIHDRHNAMVRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++L+ + +P + L + LV E IP+ L +NK +L+D + + K + GY
Sbjct: 72 DQVVLVVAAHEPDINELLLNKMLVMIEHADIPIVLCINKCDLMDSDTEDMVK-LYQSIGY 130
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
E L S + G+D L L + T GPSGVGKSSL+NA VD F
Sbjct: 131 EVLMTSTYNMTGIDDLRHVLEHKVTAFAGPSGVGKSSLLNA------------VDPKFA- 177
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ GEVS K RGKHTTRH SL L ++ DTPGF+ V+ + L
Sbjct: 178 ---------FQTGEVSDKIKRGKHTTRHASLYSLDSNSFIMDTPGFSAIEFNDVSLERLP 228
Query: 258 QTFPE 262
FPE
Sbjct: 229 TLFPE 233
>gi|302392188|ref|YP_003828008.1| ribosome small subunit-dependent GTPase A [Acetohalobium arabaticum
DSM 5501]
gi|302204265|gb|ADL12943.1| ribosome small subunit-dependent GTPase A [Acetohalobium arabaticum
DSM 5501]
Length = 295
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 128/226 (56%), Gaps = 28/226 (12%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
VGD+V ID ++ G+IE + RST++ P VAN+D ++L+F+ QP+L L RFL
Sbjct: 42 VGDRVEFSIIDEDEQTGVIEELLPRSTKLDRPAVANIDQVVLVFASQQPELNYELLDRFL 101
Query: 101 VEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRL 157
+ E+ G + + +NKV+LV LN + L + GY ++ S E++ GL+ L + L
Sbjct: 102 LLVEAYGFEILICINKVDLVG---LNEAQEALADYEDIGYRVVYTSAETEHGLNRLTEEL 158
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
+ + +V+ GPSGVGKSSL+N L SP A + VG+VS K
Sbjct: 159 QGRLSVLAGPSGVGKSSLLNRL--SPEA--------------------EMDVGKVSQKIK 196
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+G+HTTRHV L+ L GG + DTPGF + + ++ LA F E+
Sbjct: 197 QGRHTTRHVELITLDNGGLVVDTPGFTSLRIDFIAERELAYFFREM 242
>gi|269797915|ref|YP_003311815.1| ribosome small subunit-dependent GTPase A [Veillonella parvula DSM
2008]
gi|269094544|gb|ACZ24535.1| ribosome small subunit-dependent GTPase A [Veillonella parvula DSM
2008]
Length = 287
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 121/245 (49%), Gaps = 29/245 (11%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D TG C VR LKK + +LVGD+V + G +E++ R ++ P VAN+
Sbjct: 18 DDTGTIHECKVRGRLKKGRYSLLVGDRVTIS------EDGFVESIHGRHNSMVRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++L+ + +P + L + LV E IP+ L +NK +L+D E T + GY
Sbjct: 72 DQVVLVVAAHEPDINELLLNKMLVMIEHADIPIVLCINKCDLMDSET-ETMVDLYKSIGY 130
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ L S + G+D L L+ + T GPSGVGKSSL+NA VD F
Sbjct: 131 KVLMTSTYNMTGIDDLRHVLQHKVTAFAGPSGVGKSSLLNA------------VDPKFA- 177
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ GEVS K RGKHTTRH SL L ++ DTPGF+ V+ + L
Sbjct: 178 ---------FQTGEVSDKIKRGKHTTRHASLYSLDADSFIMDTPGFSAIEFNDVSLERLP 228
Query: 258 QTFPE 262
FPE
Sbjct: 229 TLFPE 233
>gi|261405804|ref|YP_003242045.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp.
Y412MC10]
gi|261282267|gb|ACX64238.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp.
Y412MC10]
Length = 302
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 126/239 (52%), Gaps = 26/239 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK LVGD+V + + G ++ + RS++++ PPVANVD +LLFS
Sbjct: 34 CRARGIFKKKGISPLVGDRVKYSLTE--NGEGTVDEILPRSSQLIRPPVANVDLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE--EVLNTWKSRLHTWGYEPLFCS 143
+ +P L L +FLV E +G+ + L K +L D+ +VL K + GYE L S
Sbjct: 92 VKEPDLSLHLLDKFLVHIEHSGLEALICLTKQDLADDSDDVLEQVKRQYEEIGYEVLITS 151
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+G + + RL + +V G SGVGKSSL+NAL P S
Sbjct: 152 SLQGIGTEEVKDRLAARISVFSGQSGVGKSSLLNALM--PGLS----------------- 192
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S + GRG+HTTRHV L+ L GGY+ADTPGF+Q L++ + L+ F E
Sbjct: 193 ---LETSEISLRLGRGRHTTRHVELIELDNGGYVADTPGFSQLDFLELGVEELSTCFKE 248
>gi|297544778|ref|YP_003677080.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842553|gb|ADH61069.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 293
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 123/237 (51%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K +LVGD + I+ DR G I N+ R E+ PPVANVD +++F+
Sbjct: 27 CRARGKFRKDNVTLLVGDIAEIQMIN--DREGYILNILPRKNELTRPPVANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P+L L + +V AES I + +NKV+L ++ S GY+ + S
Sbjct: 85 IIRPELNRILLDKMIVLAESNDIEPVVCINKVDLKEDREAFDLVSVYQKIGYKAVATSTV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+K G+D L L+D+ + GPSGVGKSSLIN+++S+
Sbjct: 145 TKEGIDELKSYLKDKVSFFAGPSGVGKSSLINSIQSNIKL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GEVS K RGKHTTR V LL L GGY+ DTPGF + L + KQ L F E
Sbjct: 185 --KTGEVSEKLLRGKHTTRSVELLSLDFGGYVLDTPGFTALT-LDIEKQDLRYYFRE 238
>gi|423635368|ref|ZP_17611021.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD156]
gi|401278119|gb|EJR84055.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD156]
Length = 293
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 131/241 (54%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGDKVV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDKVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKATVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPYLENCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|297530648|ref|YP_003671923.1| ribosome small subunit-dependent GTPase A [Geobacillus sp. C56-T3]
gi|297253900|gb|ADI27346.1| ribosome small subunit-dependent GTPase A [Geobacillus sp. C56-T3]
Length = 293
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 128/245 (52%), Gaps = 28/245 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G I + +R E++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKKKVTPLVGDRVVFQATSETE--GYILEIGERQNELVRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
P L RFLV ES I + ++K++L+D E +H + GY+ +
Sbjct: 83 AVSPDFSAKLLDRFLVLVESKRIAPIIVISKIDLLDGESKEEIARYVHDYRRIGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +K GLD L RLR + +V+ G SGVGKSSL+NALR P L K
Sbjct: 143 SAVTKGGLDELALRLRGRVSVVAGQSGVGKSSLLNALR----------------PDLRLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++ST GRGKHTTRHV LL ++ GG +ADTPGF+ ++ L FPE
Sbjct: 187 ------TGDISTHLGRGKHTTRHVELLEVA-GGLVADTPGFSALEFDQIELDELPHYFPE 239
Query: 263 VCAVG 267
G
Sbjct: 240 FRTYG 244
>gi|375091695|ref|ZP_09737983.1| ribosome small subunit-dependent GTPase A [Helcococcus kunzii ATCC
51366]
gi|374562582|gb|EHR33909.1| ribosome small subunit-dependent GTPase A [Helcococcus kunzii ATCC
51366]
Length = 292
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 121/236 (51%), Gaps = 25/236 (10%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R L ++ + +VGDKV + + D IENV +R ++ PP+AN+D +LL+ S+
Sbjct: 28 ARGLFREKNIKPIVGDKVEINILQ--DGTAYIENVLERKNSLVRPPIANIDQILLVHSLV 85
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147
PK+ ++L+ E GI + L +NK+EL E + +K+ Y +F S E
Sbjct: 86 NPKINYTTFDKYLIMLEHFGIEVNLIINKIELASESEIQEFKNIYDKTKYRYIFTSAEEN 145
Query: 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
+G+D L ++D+ + GPSGVGKS+L+N L D+ DV+
Sbjct: 146 IGIDELKAIMKDKISSFAGPSGVGKSTLLNLLH------DSFDVE--------------- 184
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS-LAQTFPE 262
G +S K+ RGKHTTRH L + ++ DTPGF+ L + + L Q F E
Sbjct: 185 -TGNISKKTSRGKHTTRHTELFEIDKNTFIFDTPGFSSLDLSFIKDEKLLKQYFDE 239
>gi|452991999|emb|CCQ96619.1| GTPase involved in ribosome and sacculus morphogenesis [Clostridium
ultunense Esp]
Length = 299
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 130/243 (53%), Gaps = 30/243 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R L +K + LVGD V S ++ G IE + +R ++ PPVAN+D ++LLFS
Sbjct: 31 CRARGLFRKQGKSPLVGDWVRFESKG--EKEGWIEEISERKNVLIRPPVANMDIVVLLFS 88
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+ +P+L L RFL E +P+ + K++LV+E ++WKS T+ GY +
Sbjct: 89 LKEPELNLLLLDRFLAHIEHRRVPILIGFTKIDLVEE---HSWKSVGETYEKIGYPIVAT 145
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + G+D + L+ +T V G SGVGKSSL+N+L P A
Sbjct: 146 SARTGRGVDEIRLHLQGKTAVFAGQSGVGKSSLLNSL--LPKAL---------------- 187
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GE+S + GRG+HTTRHV LL + G ++ADTPGF Q L++ L FPE
Sbjct: 188 ----RETGEISRRLGRGRHTTRHVELLSIGQGSFVADTPGFGQLDFLEMDPVELTLCFPE 243
Query: 263 VCA 265
+ A
Sbjct: 244 IRA 246
>gi|56419712|ref|YP_147030.1| ribosome-associated GTPase [Geobacillus kaustophilus HTA426]
gi|81347649|sp|Q5L0R8.1|RSGA_GEOKA RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|56379554|dbj|BAD75462.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 293
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 128/245 (52%), Gaps = 28/245 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G I + +R E++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKKKVTPLVGDRVVFQATSETE--GYILEIGERQNELVRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
P L RFLV ES I + ++K++L+D E +H + GY+ +
Sbjct: 83 AVSPDFSAKLLDRFLVLVESKRITPIIVISKIDLLDGESKEEIARYVHDYRRIGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +K GLD L RLR + +V+ G SGVGKSSL+NALR P L K
Sbjct: 143 SAVTKGGLDELALRLRGRVSVVAGQSGVGKSSLLNALR----------------PDLRLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++ST GRGKHTTRHV LL ++ GG +ADTPGF+ ++ L FPE
Sbjct: 187 ------TGDISTHLGRGKHTTRHVELLEVA-GGLVADTPGFSALEFNQIELDELPHYFPE 239
Query: 263 VCAVG 267
G
Sbjct: 240 FRTYG 244
>gi|383787540|ref|YP_005472109.1| ribosome small subunit-dependent GTPase A [Fervidobacterium
pennivorans DSM 9078]
gi|383110387|gb|AFG35990.1| ribosome small subunit-dependent GTPase A [Fervidobacterium
pennivorans DSM 9078]
Length = 295
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 133/244 (54%), Gaps = 25/244 (10%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ G +LLC +R KK R +VGD VV + V G++EN+ RS E+ P VANVD
Sbjct: 24 ENGEKLLCKLRGKFKKQGIRPIVGD--VVEFVRVVGNEGVVENILNRSNELKKPSVANVD 81
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
++++ ++++P++ L RF+V E +P+ +ALNKV+L+ EE + ++S ++ Y
Sbjct: 82 QVVIVTTLEKPEVPYDILDRFIVLVEYENLPIVIALNKVDLLSEEQIQKFES-IYGKLYP 140
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ SV ++GL+ L + L + +V G SGVGKSSL+NAL S+
Sbjct: 141 IIKTSVTQRIGLEDLKRYLTGRVSVFAGMSGVGKSSLLNALESTLRL------------- 187
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
R GE+S K RGKHTT LL LS GG++ DTPGF + + L +
Sbjct: 188 ---------RTGEISEKLERGKHTTTAAELLSLSFGGWVVDTPGFASLEISHIKPLELRE 238
Query: 259 TFPE 262
F E
Sbjct: 239 LFIE 242
>gi|261419375|ref|YP_003253057.1| ribosome-associated GTPase [Geobacillus sp. Y412MC61]
gi|319766190|ref|YP_004131691.1| ribosome small subunit-dependent GTPase A [Geobacillus sp.
Y412MC52]
gi|261375832|gb|ACX78575.1| ribosome small subunit-dependent GTPase A [Geobacillus sp.
Y412MC61]
gi|317111056|gb|ADU93548.1| ribosome small subunit-dependent GTPase A [Geobacillus sp.
Y412MC52]
Length = 293
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 127/245 (51%), Gaps = 28/245 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G I + +R E++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKKKVTPLVGDRVVFQATSETE--GYILEIGERQNELVRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
P L RFLV ES I + ++K++L+D E +H + GY+ +
Sbjct: 83 AVSPDFSAKLLDRFLVLVESKRIAPIIVISKIDLLDGESKEEIARYVHDYRRIGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +K GLD L RLR + +V+ G SGVGKSSL+NALR P L K
Sbjct: 143 SAVTKGGLDELALRLRGRVSVVAGQSGVGKSSLLNALR----------------PDLRLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++ST GRGKHTTRHV LL ++ GG +ADTPGF ++ L FPE
Sbjct: 187 ------TGDISTHLGRGKHTTRHVELLEVA-GGLVADTPGFGALEFDQIELDELPHYFPE 239
Query: 263 VCAVG 267
G
Sbjct: 240 FRTYG 244
>gi|134299571|ref|YP_001113067.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
reducens MI-1]
gi|134052271|gb|ABO50242.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
reducens MI-1]
Length = 292
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 123/224 (54%), Gaps = 24/224 (10%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTR 98
LVGD+V+V + G I+ V R TE+ P VAN+D +++F+++ P+ L R
Sbjct: 39 ALVGDRVMVTPVR--QNTGRIDEVMPRKTELFRPAVANIDQAVIVFAVENPEPNMTLLDR 96
Query: 99 FLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
FLV AE+ + + LNK +L+ + W GY + S + G++ L Q L
Sbjct: 97 FLVLAENAEVLPVVCLNKGDLLTSRRDHEWLKLYKRIGYPTIITSTKLGEGINELRQLLI 156
Query: 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218
+TTV GPSGVGKSSL+NA+ +P L + + G++S K R
Sbjct: 157 GKTTVFAGPSGVGKSSLLNAI----------------QPGL------ELKTGDISHKLKR 194
Query: 219 GKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GKHTTRHV LLPL+ GGY+ D+PGF+ L ++ K+ LA FPE
Sbjct: 195 GKHTTRHVELLPLNKGGYVVDSPGFSSLDLPQMNKEDLAYYFPE 238
>gi|239626552|ref|ZP_04669583.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516698|gb|EEQ56564.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 292
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 122/237 (51%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V +D + G I+ + R+ ++ P VAN+D L++FS
Sbjct: 25 CKAKGVFRNKKIKPLVGDNVEFSVLDETEGEGNIDAILPRANALVRPAVANIDQALVVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P L RFLV E +P+ + NK++L D+E++ T++S GYE F S
Sbjct: 85 LTHPSPNLNLLDRFLVMMEIQQVPVIICFNKMDLGDDELMGTYRSIYEAAGYEVKFISAI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G++ + + LR +T+V+ GPSGVGKSSL N ++ P A+
Sbjct: 145 DETGVEEVRKILRGKTSVLAGPSGVGKSSLTNCIQ--PRAA------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++S K RGKHTTRH L + Y+ DTPGF+ + + L FPE
Sbjct: 184 -METGDISHKIERGKHTTRHSQLFYVEENTYMMDTPGFSSMFTPDLEEGELKDYFPE 239
>gi|375008145|ref|YP_004981778.1| ribosome biogenesis GTPase RsgA [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359286994|gb|AEV18678.1| ribosome biogenesis GTPase RsgA [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 293
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 128/245 (52%), Gaps = 28/245 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G I + +R E++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKKKVTPLVGDRVVFQATSETE--GYILEIGERQNELVRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
P L RFLV ES I + ++K++L+D E +H + GY+ +
Sbjct: 83 AVSPDFSAKLLDRFLVLVESKRITPIIVISKIDLLDGESKEEIARYVHDYRRIGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +K GLD L RLR + +V+ G SGVGKSSL+NALR P L K
Sbjct: 143 SAVTKGGLDELALRLRGRVSVVAGQSGVGKSSLLNALR----------------PDLRLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++ST GRGKHTTRHV LL ++ GG +ADTPGF+ ++ L FPE
Sbjct: 187 ------TGDISTHLGRGKHTTRHVELLEVA-GGLVADTPGFSALEFDQIELDELPHYFPE 239
Query: 263 VCAVG 267
G
Sbjct: 240 FRTYG 244
>gi|311029978|ref|ZP_07708068.1| ribosome-associated GTPase [Bacillus sp. m3-13]
Length = 292
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 131/238 (55%), Gaps = 26/238 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G I +V R E++ PP+AN+D +L+FS
Sbjct: 26 CRGRGVFRKNKITPLVGDSVVFQAEN--DQEGYIMDVLPRKNELVRPPIANIDQAILVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSV 144
+P+ L RFLV ES G+ + ++K++L+DE+ L + + GYE L S
Sbjct: 84 AMEPEFSTVLLDRFLVLIESKGVSPLICISKMDLLDEDAKLLGFADYYRSIGYEVLLTST 143
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ L +L L+++++VI G SGVGKSSL+N LR P L
Sbjct: 144 KEPEQLKEILPYLKEKSSVIAGQSGVGKSSLLNVLR----------------PEL----- 182
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + +S+ GRGKHTTRHV L+ ++ G++ADTPGF+ L++ + + FPE
Sbjct: 183 -ELKTDNISSHLGRGKHTTRHVELMEIN-NGFVADTPGFSSLEFLEMEAEDVKDCFPE 238
>gi|124024731|ref|YP_001013847.1| GTPases [Prochlorococcus marinus str. NATL1A]
gi|254766822|sp|A2BZC2.1|RSGA_PROM1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|123959799|gb|ABM74582.1| Predicted GTPases [Prochlorococcus marinus str. NATL1A]
Length = 312
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 130/245 (53%), Gaps = 30/245 (12%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+ LLC+ R+ L + VGD V V SID+ ++R ++ +V R + + P VANV +
Sbjct: 42 IRLLCIRRSKLNYQGLFIDVGDIVGVESIDYKNKRAVVSDVEPRQSFLKRPAVANVTLVS 101
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
+ S D+P + +RFL+ AE I + L K++L+ + L + ++ +WGY+ +
Sbjct: 102 ICISADEPLFDMEQTSRFLLTAECANIEPLIILTKIDLITKNDLILYINKFKSWGYDCIP 161
Query: 142 CSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINAL---RSSPHASDAADVDNWFEP 197
S+ + G+DSL++RLR + TV+ GPSGVGK+SLIN L S P +S
Sbjct: 162 VSIHNSQGIDSLIERLRKTKLTVLAGPSGVGKTSLINHLIPTVSLPTSS----------- 210
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
VS K RG HTTRHV L + G LADTPGFN+P ++ A
Sbjct: 211 --------------VSKKLKRGTHTTRHVELFAIGNGSLLADTPGFNRPEIV-CEPSDFA 255
Query: 258 QTFPE 262
FPE
Sbjct: 256 FLFPE 260
>gi|386758301|ref|YP_006231517.1| ribosome-associated GTPase [Bacillus sp. JS]
gi|384931583|gb|AFI28261.1| ribosome-associated GTPase [Bacillus sp. JS]
Length = 298
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 125/244 (51%), Gaps = 29/244 (11%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+ C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+
Sbjct: 27 IQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLV 84
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEP 139
FS QP L RFLV E+ I + + K++L+D E+ + + GY
Sbjct: 85 FSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIDDQDTEDTIQAYAEDYRNIGYNV 144
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S + + L ++ +D+TTV G SGVGKSSL+NA+ P L
Sbjct: 145 YLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPEL 188
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L T
Sbjct: 189 G------LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYT 241
Query: 260 FPEV 263
FP++
Sbjct: 242 FPDI 245
>gi|163815231|ref|ZP_02206608.1| hypothetical protein COPEUT_01391 [Coprococcus eutactus ATCC 27759]
gi|158449426|gb|EDP26421.1| ribosome small subunit-dependent GTPase A [Coprococcus eutactus
ATCC 27759]
Length = 295
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 124/245 (50%), Gaps = 24/245 (9%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ GV C + + + K + LVGD V + ID G I + R ++ P VANVD
Sbjct: 23 RDGVLYECKAKGVFRNKKIKPLVGDNVNIEIIDSEKDLGNIVEILPRFNSLIRPAVANVD 82
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
+++F++ +P+ L RFLV E + + + NK +L + + T +S + GYE
Sbjct: 83 QTIIIFAVSEPEPNFNLLDRFLVSMEKSDVKTIICFNKTDLSPDN-METCRSYSKS-GYE 140
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
LF S G++ L + LRD+TTV GPSGVGKSS +NA++ A
Sbjct: 141 TLFISARENEGIEELRELLRDRTTVFAGPSGVGKSSTLNAIKPEAEA------------- 187
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ G VS K RGKHTTRH L+ + G Y+ DTPGF+ + + + L +
Sbjct: 188 ---------QTGAVSEKIKRGKHTTRHSELMHIEGDTYIMDTPGFSSLYVDSIEPEDLKE 238
Query: 259 TFPEV 263
FP++
Sbjct: 239 YFPDI 243
>gi|291518523|emb|CBK73744.1| ribosome small subunit-dependent GTPase A [Butyrivibrio
fibrisolvens 16/4]
Length = 295
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 117/237 (49%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K K + LVGD V + I + G + + R +E++ P VANVD LL+F+
Sbjct: 25 CKAKGAFRKDKIKPLVGDDVEIDVISEEEMTGNVIRILPRKSELIRPAVANVDQALLIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P+ L RFL E +P+T+ NK +L DE + GY+ +F S +
Sbjct: 85 TKSPEPNLNLLDRFLCMMEEQELPITICFNKDDLADEGFQQQMRDTYEPAGYKVIFTSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G++ + L+ +T+ + GPSGVGKSS++N L +
Sbjct: 145 EEAGIEIIKDVLKGKTSTVAGPSGVGKSSIVNLLTQG----------------------Q 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GEVS K GRGKHTTRH LL L Y+ DTPGF+ + KV L + FPE
Sbjct: 183 VMETGEVSEKIGRGKHTTRHSELLYLGDDTYIMDTPGFSSLFVPKVEPTDLYRLFPE 239
>gi|289578502|ref|YP_003477129.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
italicus Ab9]
gi|289528215|gb|ADD02567.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
italicus Ab9]
Length = 293
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 124/237 (52%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K +LVGD + I+ DR G I N+ R ++ PPVANVD +++F+
Sbjct: 27 CRARGKFRKDNVTLLVGDIAEIQMIN--DREGYILNILPRKNKLTRPPVANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P+L L + +V AES I + +NKV+L +++ S GY+ + S
Sbjct: 85 IIRPELNRILLDKMIVLAESNDIEPVVCINKVDLKEDKEAFDLVSVYQKIGYKAVATSTV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+K G+D L L+D+ + GPSGVGKSSLIN+++S+
Sbjct: 145 TKEGIDELKSYLKDKVSFFAGPSGVGKSSLINSIQSNIKL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GEVS K RGKHTTR V LL L GGY+ DTPGF + L + KQ L F E
Sbjct: 185 --KTGEVSEKLLRGKHTTRSVELLSLDFGGYVLDTPGFTALT-LDIEKQDLRYYFRE 238
>gi|423649724|ref|ZP_17625294.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD169]
gi|401283004|gb|EJR88901.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD169]
Length = 293
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 131/241 (54%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKATVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPYLENCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|30021949|ref|NP_833580.1| ribosome-associated GTPase [Bacillus cereus ATCC 14579]
gi|75763207|ref|ZP_00742970.1| GTPase [Bacillus thuringiensis serovar israelensis ATCC 35646]
gi|206971340|ref|ZP_03232291.1| ribosome small subunit-dependent GTPase A [Bacillus cereus AH1134]
gi|218232949|ref|YP_002368662.1| ribosome-associated GTPase [Bacillus cereus B4264]
gi|218899014|ref|YP_002447425.1| ribosome-associated GTPase [Bacillus cereus G9842]
gi|228902365|ref|ZP_04066521.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis IBL 4222]
gi|228922615|ref|ZP_04085915.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228940949|ref|ZP_04103508.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228954138|ref|ZP_04116166.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228960077|ref|ZP_04121741.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228966810|ref|ZP_04127854.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228973878|ref|ZP_04134454.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980468|ref|ZP_04140778.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis Bt407]
gi|229047548|ref|ZP_04193138.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH676]
gi|229081116|ref|ZP_04213626.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock4-2]
gi|229111332|ref|ZP_04240885.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock1-15]
gi|229129137|ref|ZP_04258110.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-Cer4]
gi|229146432|ref|ZP_04274803.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-ST24]
gi|229152060|ref|ZP_04280255.1| ribosome biogenesis GTPase rsgA [Bacillus cereus m1550]
gi|229192030|ref|ZP_04319000.1| ribosome biogenesis GTPase rsgA [Bacillus cereus ATCC 10876]
gi|296504356|ref|YP_003666056.1| ribosome-associated GTPase [Bacillus thuringiensis BMB171]
gi|365159362|ref|ZP_09355543.1| ribosome small subunit-dependent GTPase A [Bacillus sp.
7_6_55CFAA_CT2]
gi|384187921|ref|YP_005573817.1| ribosome-associated GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|402564797|ref|YP_006607521.1| GTPase RsgA [Bacillus thuringiensis HD-771]
gi|410676235|ref|YP_006928606.1| putative ribosome biogenesis GTPase RsgA [Bacillus thuringiensis
Bt407]
gi|423359103|ref|ZP_17336606.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD022]
gi|423385364|ref|ZP_17362620.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG1X1-2]
gi|423412334|ref|ZP_17389454.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG3O-2]
gi|423425997|ref|ZP_17403028.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG3X2-2]
gi|423431881|ref|ZP_17408885.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG4O-1]
gi|423437316|ref|ZP_17414297.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG4X12-1]
gi|423503461|ref|ZP_17480053.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HD73]
gi|423528278|ref|ZP_17504723.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB1-1]
gi|423561733|ref|ZP_17538009.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MSX-A1]
gi|423582071|ref|ZP_17558182.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD014]
gi|423585730|ref|ZP_17561817.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD045]
gi|423628954|ref|ZP_17604703.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD154]
gi|423641058|ref|ZP_17616676.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD166]
gi|423656720|ref|ZP_17632019.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD200]
gi|434376965|ref|YP_006611609.1| GTPase RsgA [Bacillus thuringiensis HD-789]
gi|449090804|ref|YP_007423245.1| ribosome-associated GTPase [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|452200300|ref|YP_007480381.1| Ribosome small subunit-stimulated GTPase EngC [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|38257409|sp|Q819U6.1|RSGA_BACCR RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|29897505|gb|AAP10781.1| GTPase [Bacillus cereus ATCC 14579]
gi|74489304|gb|EAO52757.1| GTPase [Bacillus thuringiensis serovar israelensis ATCC 35646]
gi|206734112|gb|EDZ51283.1| ribosome small subunit-dependent GTPase A [Bacillus cereus AH1134]
gi|218160906|gb|ACK60898.1| conserved hypothetical protein TIGR00157 [Bacillus cereus B4264]
gi|218546002|gb|ACK98396.1| conserved hypothetical protein TIGR00157 [Bacillus cereus G9842]
gi|228591581|gb|EEK49430.1| ribosome biogenesis GTPase rsgA [Bacillus cereus ATCC 10876]
gi|228631409|gb|EEK88043.1| ribosome biogenesis GTPase rsgA [Bacillus cereus m1550]
gi|228637065|gb|EEK93524.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-ST24]
gi|228654374|gb|EEL10239.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-Cer4]
gi|228672108|gb|EEL27399.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock1-15]
gi|228702160|gb|EEL54636.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock4-2]
gi|228723795|gb|EEL75150.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH676]
gi|228779288|gb|EEM27545.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis Bt407]
gi|228785903|gb|EEM33906.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228792909|gb|EEM40467.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228799593|gb|EEM46546.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228805458|gb|EEM52049.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228818785|gb|EEM64851.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228837044|gb|EEM82385.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228857263|gb|EEN01767.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis IBL 4222]
gi|296325408|gb|ADH08336.1| ribosome-associated GTPase [Bacillus thuringiensis BMB171]
gi|326941630|gb|AEA17526.1| ribosome-associated GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|363625360|gb|EHL76401.1| ribosome small subunit-dependent GTPase A [Bacillus sp.
7_6_55CFAA_CT2]
gi|401084975|gb|EJP93221.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD022]
gi|401104402|gb|EJQ12379.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG3O-2]
gi|401110744|gb|EJQ18643.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG3X2-2]
gi|401116637|gb|EJQ24475.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG4O-1]
gi|401120471|gb|EJQ28267.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG4X12-1]
gi|401201990|gb|EJR08855.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MSX-A1]
gi|401212950|gb|EJR19691.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD014]
gi|401233076|gb|EJR39572.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD045]
gi|401268499|gb|EJR74547.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD154]
gi|401280119|gb|EJR86041.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD166]
gi|401290461|gb|EJR96155.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD200]
gi|401635420|gb|EJS53175.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG1X1-2]
gi|401793449|gb|AFQ19488.1| GTPase RsgA [Bacillus thuringiensis HD-771]
gi|401875522|gb|AFQ27689.1| GTPase RsgA [Bacillus thuringiensis HD-789]
gi|402451941|gb|EJV83760.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB1-1]
gi|402459682|gb|EJV91419.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HD73]
gi|409175364|gb|AFV19669.1| putative ribosome biogenesis GTPase RsgA [Bacillus thuringiensis
Bt407]
gi|449024561|gb|AGE79724.1| ribosome-associated GTPase [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|452105693|gb|AGG02633.1| Ribosome small subunit-stimulated GTPase EngC [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 293
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 131/241 (54%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKATVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPYLENCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|229180137|ref|ZP_04307481.1| ribosome biogenesis GTPase rsgA [Bacillus cereus 172560W]
gi|228603346|gb|EEK60823.1| ribosome biogenesis GTPase rsgA [Bacillus cereus 172560W]
Length = 293
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 131/241 (54%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKATVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPYLENCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|335040148|ref|ZP_08533284.1| ribosome biogenesis GTPase RsgA [Caldalkalibacillus thermarum
TA2.A1]
gi|334179973|gb|EGL82602.1| ribosome biogenesis GTPase RsgA [Caldalkalibacillus thermarum
TA2.A1]
Length = 295
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 124/246 (50%), Gaps = 25/246 (10%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D +G C R + KK + LVGD V S+ +R G + + R ++ PP+ANV
Sbjct: 18 DHSGKVWQCRARGVFKKKGLQPLVGDVVQFESVS--EREGWVTQLKDRKNRLVRPPIANV 75
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWG 136
D LL+FS+ +P F L R LV E I + K++L D++ + + G
Sbjct: 76 DQALLVFSVKEPSFSSFLLDRMLVTVEKARIRPLICFTKLDLCPDDKNIQAAINVYQQLG 135
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+ S S G+D L++ LR + TV+ G SGVGKS+L+N L P A
Sbjct: 136 YQICQTSSVSGEGIDDLMKLLRGKITVLAGQSGVGKSTLLNLL--CPQA----------- 182
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
+ GEVS K GRG+HTTRHV LL L GGG +ADTPGF+Q + + L
Sbjct: 183 ---------ELETGEVSDKLGRGRHTTRHVELLQLPGGGLVADTPGFSQLDFKDIEPEEL 233
Query: 257 AQTFPE 262
A F E
Sbjct: 234 AACFVE 239
>gi|421074220|ref|ZP_15535260.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans JBW45]
gi|392527726|gb|EIW50812.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans JBW45]
Length = 291
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 24/242 (9%)
Query: 25 LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLF 84
+C +R KK + +LVGD+V + + +G+IE + R + + P +AN+D +++ F
Sbjct: 24 MCTLRGRFKKERFSLLVGDEVEYNITE--NGKGIIEKILPRRSMLQRPMIANIDQVIITF 81
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV 144
+ P + + RFLV AE + + + + +NK++L D E L + GY + S
Sbjct: 82 AAVSPDINTILIDRFLVLAEMSDLDIVICINKIDLADSEELKPILELYRSIGYCVITISA 141
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ +G++ L +L + +V GPSG GKS+++N +
Sbjct: 142 KMGVGIEELRNQLSGKISVFAGPSGAGKSTILNTVEEGLTLV------------------ 183
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
G+VS K GRGKHTTR LLPLS GG++ DTPGF+ V K L FPE+
Sbjct: 184 ----TGQVSEKIGRGKHTTRFAELLPLSSGGFVVDTPGFSFTEFENVKKNELMYYFPEIA 239
Query: 265 AV 266
AV
Sbjct: 240 AV 241
>gi|138894698|ref|YP_001125151.1| ribosome-associated GTPase [Geobacillus thermodenitrificans NG80-2]
gi|196247682|ref|ZP_03146384.1| ribosome small subunit-dependent GTPase A [Geobacillus sp. G11MC16]
gi|254766802|sp|A4IM52.1|RSGA_GEOTN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|134266211|gb|ABO66406.1| GTPase [Geobacillus thermodenitrificans NG80-2]
gi|196212466|gb|EDY07223.1| ribosome small subunit-dependent GTPase A [Geobacillus sp. G11MC16]
Length = 293
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 127/245 (51%), Gaps = 28/245 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G I + +R E++ PPVANV+ +L+FS
Sbjct: 25 CRGRGVFRKQKVTPLVGDRVVFTATGEAE--GYILEICERQNELVRPPVANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFC 142
P L RFLV ES I + ++K++L+D +E + + GYE +
Sbjct: 83 AVSPDFSAKLLDRFLVLVESKNITPVIVISKIDLLDGGMKETIAQYVRDYRHIGYEVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +K GLD L+ L + +V+ G SGVGKSSL+NALR P L K
Sbjct: 143 STVTKEGLDELMSHLCGRVSVVAGQSGVGKSSLLNALR----------------PDLQLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++ST GRGKHTTRHV LL ++ GG +ADTPGF+ + L FPE
Sbjct: 187 ------TGDISTHLGRGKHTTRHVELLAIA-GGLVADTPGFSALEFDHIELDELPYYFPE 239
Query: 263 VCAVG 267
A G
Sbjct: 240 FRAYG 244
>gi|228909686|ref|ZP_04073509.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis IBL 200]
gi|228849975|gb|EEM94806.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis IBL 200]
Length = 293
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 130/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKATVEAYAEDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPYLENCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|228987004|ref|ZP_04147130.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229157437|ref|ZP_04285515.1| ribosome biogenesis GTPase rsgA [Bacillus cereus ATCC 4342]
gi|228626164|gb|EEK82913.1| ribosome biogenesis GTPase rsgA [Bacillus cereus ATCC 4342]
gi|228772782|gb|EEM21222.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 293
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 131/241 (54%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPSE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ +++ + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIEIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|428279173|ref|YP_005560908.1| ribosome-associated GTPase [Bacillus subtilis subsp. natto BEST195]
gi|291484130|dbj|BAI85205.1| ribosome-associated GTPase [Bacillus subtilis subsp. natto BEST195]
Length = 298
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 126/244 (51%), Gaps = 29/244 (11%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+ C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+
Sbjct: 27 IQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLV 84
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEP 139
FS QP L RFLV E+ I + + K++L++ E+ + + GY+
Sbjct: 85 FSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 144
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S + + L ++ +D+TTV G SGVGKSSL+NA+ P L
Sbjct: 145 YLTSSKDQDSLTDIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPEL 188
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L T
Sbjct: 189 G------LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYT 241
Query: 260 FPEV 263
FP++
Sbjct: 242 FPDI 245
>gi|398304094|ref|ZP_10507680.1| GTPase RsgA [Bacillus vallismortis DV1-F-3]
Length = 298
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+FS
Sbjct: 29 CRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLLEIKERTNELIRPPICNVDQAVLVFS 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L++++ + T+ GY+
Sbjct: 87 AVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTHDAIQTYAQDYRNIGYDVYL 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + L ++ +D+TTV G SGVGKSSL+NA+ P LG
Sbjct: 147 TSSKDQNSLTDIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPELG- 189
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 190 -----LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFP 243
Query: 262 EV 263
++
Sbjct: 244 DI 245
>gi|321315344|ref|YP_004207631.1| GTPase RsgA [Bacillus subtilis BSn5]
gi|320021618|gb|ADV96604.1| GTPase RsgA [Bacillus subtilis BSn5]
Length = 298
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 126/244 (51%), Gaps = 29/244 (11%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+ C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+
Sbjct: 27 IQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLV 84
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEP 139
FS QP L RFLV E+ I + + K++L++ E+ + + GY+
Sbjct: 85 FSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 144
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S + + L ++ +D+TTV G SGVGKSSL+NA+ P L
Sbjct: 145 YLTSSKDQDSLTDIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPEL 188
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L T
Sbjct: 189 G------LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYT 241
Query: 260 FPEV 263
FP++
Sbjct: 242 FPDI 245
>gi|47569487|ref|ZP_00240167.1| GTPase YjeQ [Bacillus cereus G9241]
gi|47553816|gb|EAL12187.1| GTPase YjeQ [Bacillus cereus G9241]
Length = 293
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 131/241 (54%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPSE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ +++ + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIEIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|384175320|ref|YP_005556705.1| ribosome small subunit-dependent GTPase A [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
gi|349594544|gb|AEP90731.1| ribosome small subunit-dependent GTPase A [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
Length = 298
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 126/244 (51%), Gaps = 29/244 (11%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+ C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+
Sbjct: 27 IQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLV 84
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEP 139
FS QP L RFLV E+ I + + K++L++ E+ + + GY+
Sbjct: 85 FSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 144
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S + + L ++ +D+TTV G SGVGKSSL+NA+ P L
Sbjct: 145 YLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPEL 188
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L T
Sbjct: 189 G------LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYT 241
Query: 260 FPEV 263
FP++
Sbjct: 242 FPDI 245
>gi|56553848|pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 126/244 (51%), Gaps = 29/244 (11%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+ C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+
Sbjct: 36 IQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLV 93
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEP 139
FS QP L RFLV E+ I + + K++L++ E+ + + GY+
Sbjct: 94 FSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S + + L ++ +D+TTV G SGVGKSSL+NA+ P L
Sbjct: 154 YLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPEL 197
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L T
Sbjct: 198 G------LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYT 250
Query: 260 FPEV 263
FP++
Sbjct: 251 FPDI 254
>gi|16078641|ref|NP_389460.1| ribosome-associated GTPase [Bacillus subtilis subsp. subtilis str.
168]
gi|221309453|ref|ZP_03591300.1| ribosome-associated GTPase [Bacillus subtilis subsp. subtilis str.
168]
gi|221313778|ref|ZP_03595583.1| ribosome-associated GTPase [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221318702|ref|ZP_03599996.1| ribosome-associated GTPase [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221322973|ref|ZP_03604267.1| ribosome-associated GTPase [Bacillus subtilis subsp. subtilis str.
SMY]
gi|402775823|ref|YP_006629767.1| GTPase [Bacillus subtilis QB928]
gi|418033275|ref|ZP_12671752.1| ribosome-associated GTPase [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|430758999|ref|YP_007209720.1| GTPase EngC [Bacillus subtilis subsp. subtilis str. BSP1]
gi|452913893|ref|ZP_21962520.1| ribosome small subunit-dependent GTPase A [Bacillus subtilis
MB73/2]
gi|38257357|sp|O34530.1|RSGA_BACSU RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|2337807|emb|CAA74251.1| YloQ protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2633950|emb|CAB13451.1| GTPase involved in ribosome and sacculus morphogenesis [Bacillus
subtilis subsp. subtilis str. 168]
gi|351469423|gb|EHA29599.1| ribosome-associated GTPase [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|402481005|gb|AFQ57514.1| GTPase involved in ribosome and sacculusmorphogenesis [Bacillus
subtilis QB928]
gi|407958985|dbj|BAM52225.1| ribosome-associated GTPase [Synechocystis sp. PCC 6803]
gi|407964562|dbj|BAM57801.1| ribosome-associated GTPase [Bacillus subtilis BEST7003]
gi|430023519|gb|AGA24125.1| GTPase EngC [Bacillus subtilis subsp. subtilis str. BSP1]
gi|452116313|gb|EME06708.1| ribosome small subunit-dependent GTPase A [Bacillus subtilis
MB73/2]
Length = 298
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 126/244 (51%), Gaps = 29/244 (11%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+ C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+
Sbjct: 27 IQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLV 84
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEP 139
FS QP L RFLV E+ I + + K++L++ E+ + + GY+
Sbjct: 85 FSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 144
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S + + L ++ +D+TTV G SGVGKSSL+NA+ P L
Sbjct: 145 YLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPEL 188
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L T
Sbjct: 189 G------LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYT 241
Query: 260 FPEV 263
FP++
Sbjct: 242 FPDI 245
>gi|228992589|ref|ZP_04152516.1| ribosome biogenesis GTPase rsgA [Bacillus pseudomycoides DSM 12442]
gi|228998637|ref|ZP_04158224.1| ribosome biogenesis GTPase rsgA [Bacillus mycoides Rock3-17]
gi|229006137|ref|ZP_04163824.1| ribosome biogenesis GTPase rsgA [Bacillus mycoides Rock1-4]
gi|228755090|gb|EEM04448.1| ribosome biogenesis GTPase rsgA [Bacillus mycoides Rock1-4]
gi|228761105|gb|EEM10064.1| ribosome biogenesis GTPase rsgA [Bacillus mycoides Rock3-17]
gi|228767223|gb|EEM15859.1| ribosome biogenesis GTPase rsgA [Bacillus pseudomycoides DSM 12442]
Length = 293
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 129/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + +F+R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQAEN--PNEGYVLEIFERKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L K
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDLALK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 187 ------TDDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|124021738|ref|YP_001016045.1| GTPase [Prochlorococcus marinus str. MIT 9303]
gi|254766823|sp|A2C5M0.1|RSGA_PROM3 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|123962024|gb|ABM76780.1| Predicted GTPase [Prochlorococcus marinus str. MIT 9303]
Length = 321
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 130/247 (52%), Gaps = 24/247 (9%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
D + LLC R L V VGD+V V +IDW +RR ++ +V R + I PPVAN
Sbjct: 40 TDAEPLRLLCTRRTRLDHRGAAVHVGDRVWVEAIDWQERRAVVGDVEPRQSWINRPPVAN 99
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
V +++ ++ QP + +RFL+ AE TG+ + L L K +L+ + L RL WG
Sbjct: 100 VTAVVVALAVKQPCFDADQASRFLLSAEQTGVDVHLILTKRDLITSDQLEQQLVRLRGWG 159
Query: 137 YEPLFCSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
Y P+ SV++ GL +L +L + V GPSGVGK+SL+N L P S
Sbjct: 160 YRPMAVSVQTGEGLGALKNKLSSTRLAVFCGPSGVGKTSLLNQL--LPQLS--------- 208
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
RVG VS + RG+HTTRHV L L G +ADTPGFN+P L +
Sbjct: 209 -----------LRVGAVSGRLQRGRHTTRHVELFRLCEGSLVADTPGFNRPE-LPADPRK 256
Query: 256 LAQTFPE 262
LA FPE
Sbjct: 257 LAVLFPE 263
>gi|415886525|ref|ZP_11548305.1| ribosome-associated GTPase [Bacillus methanolicus MGA3]
gi|387587212|gb|EIJ79535.1| ribosome-associated GTPase [Bacillus methanolicus MGA3]
Length = 293
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 125/240 (52%), Gaps = 28/240 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D G I + +R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDNVVYQAENETD--GYILEIKERKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFC 142
+P L RFLV E I + + K++LVD EE +N + GY+ L
Sbjct: 83 AVEPDFSTALLDRFLVLVEFNNIKPIICITKMDLVDEEKEEKINKYAFEYRKAGYDVLLI 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +G+ L L + +V+ G SGVGKSSL+NAL+ P L
Sbjct: 143 SSKKAIGIGDLFPHLEGKISVVAGQSGVGKSSLLNALK----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++ST GRGKHTTRHV L+ + G G +ADTPGF+ L+ + + L FP+
Sbjct: 184 ---ELKTNQISTHLGRGKHTTRHVELIEI-GNGLVADTPGFSSLELIDIEPEDLNSCFPD 239
>gi|323701790|ref|ZP_08113461.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
nigrificans DSM 574]
gi|333923486|ref|YP_004497066.1| ribosome biogenesis GTPase RsgA [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323533326|gb|EGB23194.1| ribosome small subunit-dependent GTPase A [Desulfotomaculum
nigrificans DSM 574]
gi|333749047|gb|AEF94154.1| ribosome biogenesis GTPase RsgA [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 293
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 125/239 (52%), Gaps = 26/239 (10%)
Query: 26 CVVRA--LLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R L K LVGD+V V I G I+ V R T++ PPVAN++ +++
Sbjct: 25 CTLRGKFRLDKSSSAALVGDRVKVTPIR--GNTGRIDEVLPRKTQLFRPPVANIEQAVIV 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F++ P+ L RFLV AE + + LNK +L+ + W GY+ + S
Sbjct: 83 FAVQDPEPNLTLLDRFLVLAEHANVDPVVCLNKADLMSGRREHDWLKLYRKIGYQTVITS 142
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
++ G++ L Q L +T+V GPSGVGKSSL+NA+ +P L K
Sbjct: 143 TKNGDGIEELRQLLVGKTSVFAGPSGVGKSSLLNAV----------------QPGLALK- 185
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S+K RGKHTTRHV LLPL GG++ D+PGF+ L + ++ L FPE
Sbjct: 186 -----TGEISSKLKRGKHTTRHVELLPLQMGGFVMDSPGFSSLDLPPMQREELTYYFPE 239
>gi|205373325|ref|ZP_03226129.1| ribosome-associated GTPase [Bacillus coahuilensis m4-4]
Length = 295
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 131/241 (54%), Gaps = 27/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V S D+ +R G + + +R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKKKITPLVGDYVTYES-DF-EREGTVVEIEERKNELIRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFC 142
+P+ P L RFLV ES GI + + K++L+ E ++ + + GY +
Sbjct: 83 SIEPEFSPSLLNRFLVLVESKGIQPLICITKMDLLTPNGAEKIHQFSEDYRSVGYTVVCT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++K G++ +L L ++ +V G SGVGKSSL+NA+R P L
Sbjct: 143 SSKTKEGVEQILPYLDNKVSVFAGQSGVGKSSLLNAIR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + +S GRGKHTTRHV L+P+S G++ADTPGF+ ++ + L FPE
Sbjct: 184 ---ELKTSTISASLGRGKHTTRHVELIPVSVHGHVADTPGFSSLEFTEIELEDLPFCFPE 240
Query: 263 V 263
+
Sbjct: 241 M 241
>gi|423511895|ref|ZP_17488426.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuA2-1]
gi|402450156|gb|EJV81990.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuA2-1]
Length = 293
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 129/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PNEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKIDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|392960514|ref|ZP_10325982.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans DSM 17108]
gi|421054729|ref|ZP_15517694.1| ribosome small subunit-dependent GTPase A [Pelosinus fermentans B4]
gi|421060979|ref|ZP_15523374.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans B3]
gi|421063848|ref|ZP_15525788.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans A12]
gi|421071592|ref|ZP_15532708.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans A11]
gi|392440410|gb|EIW18090.1| ribosome small subunit-dependent GTPase A [Pelosinus fermentans B4]
gi|392446857|gb|EIW24128.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans A11]
gi|392452577|gb|EIW29501.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans B3]
gi|392455091|gb|EIW31898.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans DSM 17108]
gi|392462214|gb|EIW38321.1| ribosome biogenesis GTPase RsgA [Pelosinus fermentans A12]
Length = 291
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 24/242 (9%)
Query: 25 LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLF 84
+C +R KK + +LVGD+V + + +G+IE + R + + P +AN+D +++ F
Sbjct: 24 MCTLRGRFKKERFSLLVGDEVEYNITE--NGKGIIEKILPRRSMLQRPMIANIDQVIITF 81
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV 144
+ P + + RFLV AE + + + + +NK++L D E L + GY + S
Sbjct: 82 AAVSPDINTVLIDRFLVLAEMSDLDIVICINKIDLADSEELRPILELYRSIGYCVITISA 141
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ +G++ L +L + +V GPSG GKS+++N +
Sbjct: 142 KMGVGIEELRNQLAGKISVFAGPSGAGKSTILNTVEEGLTLV------------------ 183
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
G+VS K GRGKHTTR LLPLS GG++ DTPGF+ V K L FPE+
Sbjct: 184 ----TGQVSEKIGRGKHTTRFAELLPLSSGGFVVDTPGFSFTEFENVKKNELMYYFPEIA 239
Query: 265 AV 266
AV
Sbjct: 240 AV 241
>gi|238924690|ref|YP_002938206.1| GTPase [Eubacterium rectale ATCC 33656]
gi|259495473|sp|C4ZEV1.1|RSGA_EUBR3 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|238876365|gb|ACR76072.1| GTPase [Eubacterium rectale ATCC 33656]
Length = 302
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 117/237 (49%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K K + LVGD V + +D G +E + R E++ P V+N+D L++F+
Sbjct: 35 CKAKGTFRKQKIKPLVGDTVDIAVLDEEKHIGNVERILPRKNELIRPAVSNIDMALVIFA 94
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L RFL E +P+T+ NK +L+ + KS GY +F S +
Sbjct: 95 SAKPDPNFNLLDRFLCMMEYQHVPVTICFNKKDLITPQKQQELKSIYEPAGYRVMFTSTK 154
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D + L +TT + GPSGVGKSS+IN L+ DV
Sbjct: 155 TGEGIDEIKHVLEGRTTTVAGPSGVGKSSIINCLQD--------DV-------------- 192
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH ++P+ G Y+ DTPGF+ + K+ L +PE
Sbjct: 193 QMETGHISEKIERGKHTTRHSEIIPIKDGTYIMDTPGFSSMDVPGFEKEDLWTCYPE 249
>gi|229174527|ref|ZP_04302059.1| ribosome biogenesis GTPase rsgA [Bacillus cereus MM3]
gi|423401297|ref|ZP_17378470.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-2]
gi|423457956|ref|ZP_17434753.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG5X2-1]
gi|423477999|ref|ZP_17454714.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG6X1-1]
gi|228609087|gb|EEK66377.1| ribosome biogenesis GTPase rsgA [Bacillus cereus MM3]
gi|401148340|gb|EJQ55833.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG5X2-1]
gi|401654287|gb|EJS71830.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-2]
gi|402428161|gb|EJV60258.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG6X1-1]
Length = 293
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|229092904|ref|ZP_04224038.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-42]
gi|228690526|gb|EEL44309.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-42]
Length = 293
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPSE--GYVLKVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|304437055|ref|ZP_07397018.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304370006|gb|EFM23668.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 291
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 122/243 (50%), Gaps = 26/243 (10%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G E+LC +R + + +L GD V V D G+IE R++ + P VAN+ +
Sbjct: 23 GAEMLCKLRGKSMRGRDALLPGDVVHVAC--GADGEGVIEGTEPRTSLLARPRVANLTQI 80
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLNTWKSRLHTWGYEP 139
++ + P P ++RFLV AE +GI + L +NK++L+D E + GY
Sbjct: 81 VITAAAASPDPHPLVVSRFLVLAEHSGIRNIVLCINKIDLIDGEAAARLCAPYEAAGYPV 140
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
L S G+ +L +RL + TV GPSG GKSSL+NA+ SS L
Sbjct: 141 LPVSAAEGTGIAALRERLSGEITVFAGPSGAGKSSLLNAMDSS----------------L 184
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G VG VS K GRG+HTTR LLP + GY+ DTPGF Q L V LA
Sbjct: 185 GLA------VGAVSEKIGRGRHTTRRAELLPFA-DGYVVDTPGFTQQELTGVAADDLAGC 237
Query: 260 FPE 262
FPE
Sbjct: 238 FPE 240
>gi|42782953|ref|NP_980200.1| ribosome-associated GTPase [Bacillus cereus ATCC 10987]
gi|52141627|ref|YP_085202.1| ribosome-associated GTPase [Bacillus cereus E33L]
gi|206976743|ref|ZP_03237647.1| conserved hypothetical protein TIGR00157 [Bacillus cereus H3081.97]
gi|217961281|ref|YP_002339849.1| ribosome-associated GTPase [Bacillus cereus AH187]
gi|222097306|ref|YP_002531363.1| ribosome-associated gtpase [Bacillus cereus Q1]
gi|228916498|ref|ZP_04080064.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229140507|ref|ZP_04269062.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-ST26]
gi|229197972|ref|ZP_04324686.1| ribosome biogenesis GTPase rsgA [Bacillus cereus m1293]
gi|301055352|ref|YP_003793563.1| ribosome small subunit-dependent GTPase A [Bacillus cereus biovar
anthracis str. CI]
gi|375285784|ref|YP_005106223.1| hypothetical protein BCN_3690 [Bacillus cereus NC7401]
gi|384181675|ref|YP_005567437.1| GTPase RsgA [Bacillus thuringiensis serovar finitimus YBT-020]
gi|402556017|ref|YP_006597288.1| GTPase RsgA [Bacillus cereus FRI-35]
gi|423353563|ref|ZP_17331190.1| ribosome small subunit-dependent GTPase A [Bacillus cereus IS075]
gi|423374342|ref|ZP_17351680.1| ribosome small subunit-dependent GTPase A [Bacillus cereus AND1407]
gi|423550390|ref|ZP_17526717.1| ribosome small subunit-dependent GTPase A [Bacillus cereus ISP3191]
gi|423567244|ref|ZP_17543491.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MSX-A12]
gi|423574533|ref|ZP_17550652.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MSX-D12]
gi|423604512|ref|ZP_17580405.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD102]
gi|56749072|sp|Q732K9.1|RSGA_BACC1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|42738880|gb|AAS42808.1| conserved hypothetical protein TIGR00157 [Bacillus cereus ATCC
10987]
gi|51975096|gb|AAU16646.1| conserved hypothetical protein [Bacillus cereus E33L]
gi|206745053|gb|EDZ56456.1| conserved hypothetical protein TIGR00157 [Bacillus cereus H3081.97]
gi|217064337|gb|ACJ78587.1| conserved hypothetical protein TIGR00157 [Bacillus cereus AH187]
gi|221241364|gb|ACM14074.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|228585451|gb|EEK43555.1| ribosome biogenesis GTPase rsgA [Bacillus cereus m1293]
gi|228643068|gb|EEK99344.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-ST26]
gi|228843077|gb|EEM88159.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|300377521|gb|ADK06425.1| ribosome small subunit-dependent GTPase A [Bacillus cereus biovar
anthracis str. CI]
gi|324327759|gb|ADY23019.1| GTPase RsgA [Bacillus thuringiensis serovar finitimus YBT-020]
gi|358354311|dbj|BAL19483.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401089376|gb|EJP97547.1| ribosome small subunit-dependent GTPase A [Bacillus cereus IS075]
gi|401094254|gb|EJQ02336.1| ribosome small subunit-dependent GTPase A [Bacillus cereus AND1407]
gi|401190006|gb|EJQ97056.1| ribosome small subunit-dependent GTPase A [Bacillus cereus ISP3191]
gi|401212058|gb|EJR18804.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MSX-D12]
gi|401214332|gb|EJR21062.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MSX-A12]
gi|401245132|gb|EJR51490.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD102]
gi|401797227|gb|AFQ11086.1| GTPase RsgA [Bacillus cereus FRI-35]
Length = 293
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPSE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|168207264|ref|ZP_02633269.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
E str. JGS1987]
gi|170661360|gb|EDT14043.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
E str. JGS1987]
Length = 287
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 117/237 (49%), Gaps = 26/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD+V +I + +G+IE++ +RS+E++ P VANV ++F+
Sbjct: 24 CKARGKFRFNSLKPMVGDRV---TIKVENGKGVIEDIHERSSELIRPTVANVTQAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L RFL E I + LNK +L E K ++ GYE LF + +
Sbjct: 81 IKNPDINLDLLNRFLTLCEYNDIHAVVCLNKEDLCTGEEKENLKELINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G D+L +RL TV+ GPSG GKS+L+N+ H
Sbjct: 141 EGKGFDALKERLEHNITVLCGPSGAGKSTLLNSFIDREH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K GRGKHTTRH L+ + GYL DTPGF + + + SL FPE
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIDVD-NGYLVDTPGFTTLDVTFIDRDSLKYCFPE 234
>gi|423389832|ref|ZP_17367058.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG1X1-3]
gi|401641923|gb|EJS59640.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG1X1-3]
Length = 293
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 131/241 (54%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPSE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV+ E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVQIEYHNIKPIICISKMDLVDEKMKETVEAFANDYREIGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|239826570|ref|YP_002949194.1| ribosome-associated GTPase [Geobacillus sp. WCH70]
gi|259495475|sp|C5D8S1.1|RSGA_GEOSW RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|239806863|gb|ACS23928.1| ribosome small subunit-dependent GTPase A [Geobacillus sp. WCH70]
Length = 293
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 127/242 (52%), Gaps = 28/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + G I N+ +R ++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKQKITPLVGDHVEFQATSETE--GYIMNIRERKNWLVRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFLV ES I + +NK++LVD++ T + + + GY+ +
Sbjct: 83 AVEPDFSTRLLDRFLVLVESKHIRPIIVVNKMDLVDDQTKPTMEQYIRDYRQIGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +KLG++ LL L +V G SGVGKSSL+NALR P L K
Sbjct: 143 STITKLGVEQLLSYLEGHISVFAGQSGVGKSSLLNALR----------------PDLQLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++ST GRGKHTTRHV LL + GGG +ADTPGF+ L + + L FPE
Sbjct: 187 ------TNDISTHLGRGKHTTRHVELLEI-GGGLVADTPGFSALELDDIELEELPLYFPE 239
Query: 263 VC 264
C
Sbjct: 240 FC 241
>gi|448237334|ref|YP_007401392.1| ribosome biogenesis GTPase [Geobacillus sp. GHH01]
gi|445206176|gb|AGE21641.1| ribosome biogenesis GTPase [Geobacillus sp. GHH01]
Length = 293
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 126/245 (51%), Gaps = 28/245 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K LVGD+VV + + G I + +R E++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKKNVTPLVGDRVVFQATSETE--GYILEIGERQNELVRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
P L RFLV ES I + ++K++L+D E +H + GY+ +
Sbjct: 83 AVSPDFSAKLLDRFLVLVESKRIAPIIVISKIDLLDGESKEEIARYVHDYRRIGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +K GLD L RLR + +V+ G SGVGKSSL+NALR P L K
Sbjct: 143 SAVTKGGLDELALRLRGRVSVVAGQSGVGKSSLLNALR----------------PDLRLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++ST GRGKHTTRHV LL ++ GG +ADTPGF ++ L FPE
Sbjct: 187 ------TGDISTHLGRGKHTTRHVELLEVA-GGLVADTPGFGALEFDQIELDELPHYFPE 239
Query: 263 VCAVG 267
G
Sbjct: 240 FRMYG 244
>gi|33862297|ref|NP_893857.1| hypothetical protein PMT0024 [Prochlorococcus marinus str. MIT
9313]
gi|81578082|sp|Q7V9C6.1|RSGA_PROMM RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|33640410|emb|CAE20199.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 321
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 131/248 (52%), Gaps = 24/248 (9%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
D + LLC R L V VGD+V V +IDW +RR ++ +V R + I PPVAN
Sbjct: 40 TDDEPLRLLCTRRTRLDHRGAAVHVGDRVWVEAIDWQERRAVVGDVEPRQSWINRPPVAN 99
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
V +++ ++ QP + +RFL+ AE TG+ + L L K +L+ + L RL WG
Sbjct: 100 VTAVVVALAVKQPCFDADQASRFLLSAEQTGVDVHLILTKRDLITSDQLEQQLVRLRGWG 159
Query: 137 YEPLFCSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
Y P+ SV++ GL +L +L + V GPSGVGK+SL+N L P S
Sbjct: 160 YRPMAVSVQTGEGLGALKNKLSSTRLAVFCGPSGVGKTSLLNQL--LPQLS--------- 208
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
RVG VS + RG+HTTRHV L L G +ADTPGFN+P L +
Sbjct: 209 -----------LRVGAVSGRLKRGRHTTRHVELFRLCEGSLVADTPGFNRPE-LPADLRK 256
Query: 256 LAQTFPEV 263
LA FPE+
Sbjct: 257 LAVLFPEL 264
>gi|118479083|ref|YP_896234.1| ribosome-associated GTPase [Bacillus thuringiensis str. Al Hakam]
gi|118418308|gb|ABK86727.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
Length = 307
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 127/241 (52%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 39 CRGRGVFRKNKITPLVGDQVVFQADNPSE--GYVLEVFDRKNELVRPPIANVDQAILVFS 96
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E + + + GY+ LF
Sbjct: 97 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 156
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 157 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 197
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 198 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 253
Query: 263 V 263
+
Sbjct: 254 L 254
>gi|260588067|ref|ZP_05853980.1| ribosome small subunit-dependent GTPase A [Blautia hansenii DSM
20583]
gi|331082364|ref|ZP_08331490.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
6_1_63FAA]
gi|260541594|gb|EEX22163.1| ribosome small subunit-dependent GTPase A [Blautia hansenii DSM
20583]
gi|330400850|gb|EGG80451.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
6_1_63FAA]
Length = 291
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 117/237 (49%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V + +D + G I ++ R ++ P VAN+D L++F+
Sbjct: 24 CKAKGIFRKEKMKPLVGDLVEIEILDEEKKLGNIVDILPRKNSLIRPAVANIDQALVIFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L RFLV E IP+ + +NK +L E + K+ GY +F S
Sbjct: 84 AKEPNPNLSLLDRFLVTMERQEIPVLICINKEDLALPEEIEEIKTIYQRCGYPVIFTSAS 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D L L +TT + GPSGVGKSSL N L +P
Sbjct: 144 KEKGIDELRAVLNGKTTAVAGPSGVGKSSLTNLL--APGI-------------------- 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D GE+S K GRG+HTTRH L+ L YL DTPGF + + K+ L FPE
Sbjct: 182 DMETGEISKKLGRGRHTTRHSQLIELWQETYLMDTPGFTSFYVENMEKEELRYYFPE 238
>gi|229019059|ref|ZP_04175897.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH1273]
gi|229025303|ref|ZP_04181722.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH1272]
gi|228735994|gb|EEL86570.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH1272]
gi|228742227|gb|EEL92389.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH1273]
Length = 293
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 131/241 (54%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPSE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV+ E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVQIEYHNIKPIICISKMDLVDEKMKETVEAFANDYREIGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|389577292|ref|ZP_10167320.1| ribosome small subunit-dependent GTPase A [Eubacterium
cellulosolvens 6]
gi|389312777|gb|EIM57710.1| ribosome small subunit-dependent GTPase A [Eubacterium
cellulosolvens 6]
Length = 294
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 116/246 (47%), Gaps = 22/246 (8%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
N G C + + +K ++ LVGD V + ID + + + R ++ P VAN
Sbjct: 16 NTADGETYECKAKGIFRKKGQKPLVGDLVEIDIIDEEKKVANVTEILPRKNALIRPAVAN 75
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
VD ++ F++ P + L RFL+ +P+ + NK +L ++E W+ + G
Sbjct: 76 VDQAMVFFALRSPNPDATLLDRFLIMMARQEVPVFICFNKRDLAEDEEARRWEEIYTSCG 135
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+ + + + G D + RL +TTVI GPSG GKS+ N ++S H
Sbjct: 136 YDVMLIAAGKEEGTDEVRSRLMGKTTVIAGPSGAGKSTFTNLMQSEVHME---------- 185
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
G++S K GRGK+TTRH LLP+ + DTPGF + + + L
Sbjct: 186 ------------TGDISKKLGRGKNTTRHAELLPIGHETFFCDTPGFTSMDIPDMEPEEL 233
Query: 257 AQTFPE 262
Q FPE
Sbjct: 234 QQYFPE 239
>gi|229013045|ref|ZP_04170210.1| ribosome biogenesis GTPase rsgA [Bacillus mycoides DSM 2048]
gi|229061464|ref|ZP_04198809.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH603]
gi|229168601|ref|ZP_04296324.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH621]
gi|423452838|ref|ZP_17429691.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG5X1-1]
gi|423470075|ref|ZP_17446819.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG6O-2]
gi|423489037|ref|ZP_17465719.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BtB2-4]
gi|423494762|ref|ZP_17471406.1| ribosome small subunit-dependent GTPase A [Bacillus cereus CER057]
gi|423498446|ref|ZP_17475063.1| ribosome small subunit-dependent GTPase A [Bacillus cereus CER074]
gi|423558576|ref|ZP_17534878.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MC67]
gi|423592143|ref|ZP_17568174.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD048]
gi|423598828|ref|ZP_17574828.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD078]
gi|423661299|ref|ZP_17636468.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VDM022]
gi|423669435|ref|ZP_17644464.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VDM034]
gi|423674386|ref|ZP_17649325.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VDM062]
gi|228615007|gb|EEK72109.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH621]
gi|228717887|gb|EEL69535.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH603]
gi|228748299|gb|EEL98159.1| ribosome biogenesis GTPase rsgA [Bacillus mycoides DSM 2048]
gi|401139397|gb|EJQ46959.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG5X1-1]
gi|401150855|gb|EJQ58307.1| ribosome small subunit-dependent GTPase A [Bacillus cereus CER057]
gi|401160495|gb|EJQ67873.1| ribosome small subunit-dependent GTPase A [Bacillus cereus CER074]
gi|401191844|gb|EJQ98866.1| ribosome small subunit-dependent GTPase A [Bacillus cereus MC67]
gi|401232276|gb|EJR38778.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD048]
gi|401237098|gb|EJR43555.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD078]
gi|401298562|gb|EJS04162.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VDM034]
gi|401301340|gb|EJS06929.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VDM022]
gi|401309937|gb|EJS15270.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VDM062]
gi|402432285|gb|EJV64344.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BtB2-4]
gi|402437327|gb|EJV69351.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG6O-2]
Length = 293
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 129/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PNEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|229031491|ref|ZP_04187491.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH1271]
gi|228729780|gb|EEL80760.1| ribosome biogenesis GTPase rsgA [Bacillus cereus AH1271]
Length = 307
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 128/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 39 CRGRGVFRKNKITPLVGDQVVFQADNPSE--GYVLEVFDRKNELVRPPIANVDQAILVFS 96
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E + ++ + GY+ LF
Sbjct: 97 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDERMRETVESYANDYREMGYDVLFT 156
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 157 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 197
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 198 ---ELKTNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 253
Query: 263 V 263
+
Sbjct: 254 L 254
>gi|423522309|ref|ZP_17498782.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuA4-10]
gi|401175003|gb|EJQ82206.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuA4-10]
Length = 293
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 129/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PNEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|163941599|ref|YP_001646483.1| ribosome-associated GTPase [Bacillus weihenstephanensis KBAB4]
gi|229134669|ref|ZP_04263478.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-ST196]
gi|423518551|ref|ZP_17495032.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuA2-4]
gi|163863796|gb|ABY44855.1| ribosome small subunit-dependent GTPase A [Bacillus
weihenstephanensis KBAB4]
gi|228648715|gb|EEL04741.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BDRD-ST196]
gi|401160759|gb|EJQ68134.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuA2-4]
Length = 293
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 129/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PNEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|229162797|ref|ZP_04290754.1| ribosome biogenesis GTPase rsgA [Bacillus cereus R309803]
gi|228620679|gb|EEK77548.1| ribosome biogenesis GTPase rsgA [Bacillus cereus R309803]
Length = 293
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 130/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + +F R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPSE--GYVLEIFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|384164127|ref|YP_005545506.1| ribosome and sacculus morphogenesis GTPase [Bacillus
amyloliquefaciens LL3]
gi|328911682|gb|AEB63278.1| GTPase involved in ribosome and sacculus morphogenesis [Bacillus
amyloliquefaciens LL3]
Length = 296
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 126/242 (52%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELVRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L + E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLASDGESKEKILSYMKDYQAIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFANKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+ST GRGKHTTRHV L+ S GG +ADTPGF+ + K+ L TFP
Sbjct: 187 ----ELKTNEISTHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEKEELGSTFP 241
Query: 262 EV 263
E+
Sbjct: 242 EI 243
>gi|30263864|ref|NP_846241.1| ribosome-associated GTPase [Bacillus anthracis str. Ames]
gi|47529290|ref|YP_020639.1| ribosome-associated GTPase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186711|ref|YP_029963.1| ribosome-associated GTPase [Bacillus anthracis str. Sterne]
gi|49479408|ref|YP_037922.1| ribosome-associated GTPase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|65321188|ref|ZP_00394147.1| COG1162: Predicted GTPases [Bacillus anthracis str. A2012]
gi|165872283|ref|ZP_02216920.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0488]
gi|167636446|ref|ZP_02394745.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0442]
gi|167641118|ref|ZP_02399373.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0193]
gi|170688863|ref|ZP_02880066.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0465]
gi|170708825|ref|ZP_02899261.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0389]
gi|177654904|ref|ZP_02936621.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0174]
gi|190565958|ref|ZP_03018877.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
Tsiankovskii-I]
gi|196035864|ref|ZP_03103266.1| conserved hypothetical protein TIGR00157 [Bacillus cereus W]
gi|196038645|ref|ZP_03105953.1| conserved hypothetical protein TIGR00157 [Bacillus cereus
NVH0597-99]
gi|196047430|ref|ZP_03114642.1| conserved hypothetical protein TIGR00157 [Bacillus cereus 03BB108]
gi|218904991|ref|YP_002452825.1| ribosome-associated GTPase [Bacillus cereus AH820]
gi|225865842|ref|YP_002751220.1| ribosome small subunit-dependent GTPase A [Bacillus cereus 03BB102]
gi|227813231|ref|YP_002813240.1| ribosome-associated GTPase [Bacillus anthracis str. CDC 684]
gi|228928909|ref|ZP_04091941.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935175|ref|ZP_04098002.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947580|ref|ZP_04109870.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229123375|ref|ZP_04252579.1| ribosome biogenesis GTPase rsgA [Bacillus cereus 95/8201]
gi|229186101|ref|ZP_04313270.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BGSC 6E1]
gi|229601599|ref|YP_002868098.1| ribosome-associated GTPase [Bacillus anthracis str. A0248]
gi|254683430|ref|ZP_05147290.1| ribosome-associated GTPase [Bacillus anthracis str. CNEVA-9066]
gi|254721393|ref|ZP_05183182.1| ribosome-associated GTPase [Bacillus anthracis str. A1055]
gi|254735900|ref|ZP_05193606.1| ribosome-associated GTPase [Bacillus anthracis str. Western North
America USA6153]
gi|254739852|ref|ZP_05197545.1| ribosome-associated GTPase [Bacillus anthracis str. Kruger B]
gi|254751042|ref|ZP_05203081.1| ribosome-associated GTPase [Bacillus anthracis str. Vollum]
gi|254756707|ref|ZP_05208736.1| ribosome-associated GTPase [Bacillus anthracis str. Australia 94]
gi|376267757|ref|YP_005120469.1| Ribosome small subunit-stimulated GTPase EngC [Bacillus cereus
F837/76]
gi|386737683|ref|YP_006210864.1| GTPase engC [Bacillus anthracis str. H9401]
gi|421507402|ref|ZP_15954322.1| GTPase RsgA [Bacillus anthracis str. UR-1]
gi|421639617|ref|ZP_16080208.1| GTPase RsgA [Bacillus anthracis str. BF1]
gi|38257419|sp|Q81WH7.1|RSGA_BACAN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|30258508|gb|AAP27727.1| ribosome small subunit-dependent GTPase A [Bacillus anthracis str.
Ames]
gi|47504438|gb|AAT33114.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
'Ames Ancestor']
gi|49180638|gb|AAT56014.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
Sterne]
gi|49330964|gb|AAT61610.1| conserved hypothetical protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|164711959|gb|EDR17499.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0488]
gi|167510898|gb|EDR86289.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0193]
gi|167528188|gb|EDR90975.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0442]
gi|170126310|gb|EDS95201.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0389]
gi|170667218|gb|EDT17978.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0465]
gi|172080415|gb|EDT65502.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
A0174]
gi|190562877|gb|EDV16843.1| conserved hypothetical protein TIGR00157 [Bacillus anthracis str.
Tsiankovskii-I]
gi|195991513|gb|EDX55479.1| conserved hypothetical protein TIGR00157 [Bacillus cereus W]
gi|196021738|gb|EDX60433.1| conserved hypothetical protein TIGR00157 [Bacillus cereus 03BB108]
gi|196030368|gb|EDX68967.1| conserved hypothetical protein TIGR00157 [Bacillus cereus
NVH0597-99]
gi|218536678|gb|ACK89076.1| conserved hypothetical protein TIGR00157 [Bacillus cereus AH820]
gi|225788967|gb|ACO29184.1| ribosome small subunit-dependent GTPase A [Bacillus cereus 03BB102]
gi|227002704|gb|ACP12447.1| ribosome small subunit-dependent GTPase A [Bacillus anthracis str.
CDC 684]
gi|228597277|gb|EEK54928.1| ribosome biogenesis GTPase rsgA [Bacillus cereus BGSC 6E1]
gi|228660151|gb|EEL15787.1| ribosome biogenesis GTPase rsgA [Bacillus cereus 95/8201]
gi|228812100|gb|EEM58431.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228824540|gb|EEM70345.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830716|gb|EEM76321.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229266007|gb|ACQ47644.1| ribosome small subunit-dependent GTPase A [Bacillus anthracis str.
A0248]
gi|364513557|gb|AEW56956.1| Ribosome small subunit-stimulated GTPase EngC [Bacillus cereus
F837/76]
gi|384387535|gb|AFH85196.1| GTPase engC [Bacillus anthracis str. H9401]
gi|401822536|gb|EJT21686.1| GTPase RsgA [Bacillus anthracis str. UR-1]
gi|403393282|gb|EJY90527.1| GTPase RsgA [Bacillus anthracis str. BF1]
Length = 293
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 127/241 (52%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPSE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E + + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|423367905|ref|ZP_17345337.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD142]
gi|401082766|gb|EJP91031.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD142]
Length = 293
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPSE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|226323823|ref|ZP_03799341.1| hypothetical protein COPCOM_01598 [Coprococcus comes ATCC 27758]
gi|225208007|gb|EEG90361.1| ribosome small subunit-dependent GTPase A [Coprococcus comes ATCC
27758]
Length = 295
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 116/237 (48%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V +D ++ G I + R E++ P VAN+D L++F+
Sbjct: 26 CKAKGIFRKEKIKPLVGDLVEYEILDAEEKTGNIIRILPRKNELIRPAVANIDQALVVFA 85
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV E IP+ + NK ++ DE + + + GY +F S
Sbjct: 86 VKKPDPHFNLLDRFLVMMERQEIPVIICFNKKDIADEPEIESLEKTYEACGYRVIFASAR 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ + + L+ +TT + GPSGVGKSSLIN L+ +
Sbjct: 146 EGENILEIKEALKGKTTTVAGPSGVGKSSLINCLQENV---------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G +S K RGKHTTRH L+P+ Y+ DTPGF+ K+ L FPE
Sbjct: 184 NMETGSISRKIERGKHTTRHSELIPIDEDSYIMDTPGFSSLYTNDFGKEELKYYFPE 240
>gi|260893170|ref|YP_003239267.1| ribosome small subunit-dependent GTPase A [Ammonifex degensii KC4]
gi|260865311|gb|ACX52417.1| ribosome small subunit-dependent GTPase A [Ammonifex degensii KC4]
Length = 292
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 121/235 (51%), Gaps = 24/235 (10%)
Query: 33 KKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLE 92
K + ++LVGD V +D + RG++E V R TE+ PPVANV+ LL+F+ +P
Sbjct: 31 KLAEEKILVGDLVEFSPLD--EERGVLEKVLPRKTELYRPPVANVEQALLVFAFTEPDPN 88
Query: 93 PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDS 152
L RFLV ++S I + NK++L + + G+ L S ++ GL+
Sbjct: 89 FKLLDRFLVLSQSAKIKPIICFNKLDLASPGLYQEERRAYEEAGFVFLAVSAKTGQGLEE 148
Query: 153 LLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212
L + L + TV+ GPSGVGKSSL+NA++ A V
Sbjct: 149 LKRHLSHRVTVLAGPSGVGKSSLLNAIQPGLKLQTAP----------------------V 186
Query: 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
S K+GRG+HTTR V LLPL GG + DTPGF L + SL+ FPE+ VG
Sbjct: 187 SRKTGRGRHTTRLVELLPLDIGGLVVDTPGFTSLDLPDIPPASLSAYFPEIARVG 241
>gi|419760426|ref|ZP_14286705.1| ribosome small subunit-dependent GTPase A [Thermosipho africanus
H17ap60334]
gi|407514529|gb|EKF49344.1| ribosome small subunit-dependent GTPase A [Thermosipho africanus
H17ap60334]
Length = 287
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 139/252 (55%), Gaps = 25/252 (9%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+TG E LC +R K+ K R +VGD V I V + G+IEN+ R E+ P +AN+D
Sbjct: 21 ETGEEFLCKLRGKFKEQKIRPIVGDLVEYRPI--VSKEGVIENILNRKNELPRPKIANID 78
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
++++ S+ +P++ L ++LV E+ +P + LNK++L+ +E +N +K+ ++ Y
Sbjct: 79 QVVVVTSLRKPEVPLQILDKYLVLVENAKLPAVIVLNKIDLLTKEEINKFKN-IYEKIYP 137
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
F S ++K G++ L + +++ + + G SGVGKSS++NA+ +P S
Sbjct: 138 VYFVSAKTKEGIEELKEIFKNKISTMAGMSGVGKSSILNAI--NPGLS------------ 183
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+V EVS K RG+HTT + L+ GG++ADTPGF + + ++ L +
Sbjct: 184 --------LKVNEVSEKLDRGRHTTTVIELMHFDFGGWIADTPGFANLDISHIEQEDLKR 235
Query: 259 TFPEVCAVGLLY 270
FPE L+
Sbjct: 236 FFPEFSGFYCLF 247
>gi|449094270|ref|YP_007426761.1| ribosome-associated GTPase [Bacillus subtilis XF-1]
gi|449028185|gb|AGE63424.1| ribosome-associated GTPase [Bacillus subtilis XF-1]
Length = 298
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 126/244 (51%), Gaps = 29/244 (11%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+ C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+
Sbjct: 27 IQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLV 84
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEP 139
FS QP L RFLV E+ I + + K++L++ E+ + + GY+
Sbjct: 85 FSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDRIQAYAEDYRNIGYDV 144
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S + + L ++ +D+TTV G SGVGKSSL+NA+ P L
Sbjct: 145 YLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPEL 188
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L T
Sbjct: 189 G------LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYT 241
Query: 260 FPEV 263
FP++
Sbjct: 242 FPDI 245
>gi|423483451|ref|ZP_17460141.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG6X1-2]
gi|401141002|gb|EJQ48557.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG6X1-2]
Length = 293
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPSE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|423612078|ref|ZP_17587939.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD107]
gi|401247085|gb|EJR53429.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD107]
Length = 293
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 129/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADN--PNEGYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCISVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|154250364|ref|YP_001411189.1| ribosome small subunit-dependent GTPase A [Fervidobacterium nodosum
Rt17-B1]
gi|154154300|gb|ABS61532.1| ribosome small subunit-dependent GTPase A [Fervidobacterium nodosum
Rt17-B1]
Length = 302
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 132/244 (54%), Gaps = 25/244 (10%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+TG + LC +R KK R + GD +V V G++EN+ R +E+ P VAN+D
Sbjct: 30 ETGEQFLCKLRGKFKKQGIRPITGD--IVEYTKIVGNEGVVENILNRKSELKKPSVANID 87
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
++++ ++D+P + L RF+V E G+P+ + LNKV+L+ EE + ++S ++ Y
Sbjct: 88 QVIIVTTIDKPAVPLDILDRFIVLVEYEGLPIVIVLNKVDLLKEEQIKEFES-IYKKLYP 146
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S + G++ L Q+L + +V G SGVGKSSL+N++ ++
Sbjct: 147 VVKTSAMTGYGIEELKQQLSGKISVFAGMSGVGKSSLLNSIENNLKL------------- 193
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
R GE+S K GRGKHTT LL LS GG++ DTPGF + +++ L +
Sbjct: 194 ---------RTGEISEKLGRGKHTTTAAELLRLSFGGWVVDTPGFASLDIDHISENILRE 244
Query: 259 TFPE 262
F E
Sbjct: 245 LFIE 248
>gi|423395838|ref|ZP_17373039.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-1]
gi|423406714|ref|ZP_17383863.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-3]
gi|401653580|gb|EJS71124.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-1]
gi|401660004|gb|EJS77487.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG2X1-3]
Length = 293
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 130/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKTTVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|401679850|ref|ZP_10811774.1| ribosome small subunit-dependent GTPase A [Veillonella sp. ACP1]
gi|400218977|gb|EJO49848.1| ribosome small subunit-dependent GTPase A [Veillonella sp. ACP1]
Length = 287
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 123/248 (49%), Gaps = 35/248 (14%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D+ G C VR +KK K +LVGD+V G +EN+ R ++ P VAN+
Sbjct: 18 DEFGTIHECKVRGRIKKSKYSLLVGDRV------EFSEDGFVENILPRHNSMIRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHT 134
D ++L+ + P + L + LV E IP+ L +NK ++ D + +++ +KS
Sbjct: 72 DQVILVVASHNPDINELLLDKMLVMIEHADIPVILCINKYDVGDASTDVLIDKYKS---- 127
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + S + +G+D L L+ + T GPSGVGKSSL+NA VD
Sbjct: 128 IGYHVITTSAINHIGIDELRNHLQHKITAFAGPSGVGKSSLLNA------------VDEK 175
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
F + GE+S K RGKHTTRH SL L+ ++ DTPGF+ +T +
Sbjct: 176 FA----------FQTGEISDKIKRGKHTTRHASLFSLNADSFIMDTPGFSSIEFTDITLE 225
Query: 255 SLAQTFPE 262
L FPE
Sbjct: 226 RLPTLFPE 233
>gi|311068099|ref|YP_003973022.1| ribosome-associated GTPase [Bacillus atrophaeus 1942]
gi|419823920|ref|ZP_14347453.1| GTPase RsgA [Bacillus atrophaeus C89]
gi|310868616|gb|ADP32091.1| ribosome-associated GTPase [Bacillus atrophaeus 1942]
gi|388471957|gb|EIM08747.1| GTPase RsgA [Bacillus atrophaeus C89]
Length = 300
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 129/251 (51%), Gaps = 29/251 (11%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+ K G + C R + +K K LVGD VV + ++ G + + R+ E++ PP++N
Sbjct: 22 DTKEGKVIQCRGRGIFRKNKITPLVGDYVVYQA--EHEKEGYLLEIKDRTNELVRPPISN 79
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKSRL 132
VD +L+FS QP L RFLV E+ I + + K++LV++ E ++ +
Sbjct: 80 VDQAVLVFSAVQPTFSTSLLDRFLVLVEANDILPIICITKMDLVNDQKTKEAIHAYAKDY 139
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GYE S + + GL ++ R++TTV G SGVGKSSL+NA+ SP
Sbjct: 140 RKIGYEVYLTSSKEQNGLPDIIPHFRNKTTVFAGQSGVGKSSLLNAI--SPEL------- 190
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ R E+S GRGKHTTRHV L+ S GG +ADTPGF+ +
Sbjct: 191 -------------ELRTDEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIE 236
Query: 253 KQSLAQTFPEV 263
+ L TFPE+
Sbjct: 237 AEELGYTFPEI 247
>gi|423418232|ref|ZP_17395321.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG3X2-1]
gi|401106505|gb|EJQ14466.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG3X2-1]
Length = 293
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 130/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDHVVFQADNPSE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV+ E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVQIEYHNIKPIICISKMDLVDEKMKETVEAFANDYREIGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|89098700|ref|ZP_01171582.1| ribosome-associated GTPase [Bacillus sp. NRRL B-14911]
gi|89086662|gb|EAR65781.1| ribosome-associated GTPase [Bacillus sp. NRRL B-14911]
Length = 293
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 125/241 (51%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D G I V +R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDNVVYQADN--DSEGYILEVKERKNELIRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFC 142
+P L RFLV E I + ++K++LV+EE + + + GY+ L
Sbjct: 83 AIEPDFSTALLDRFLVLVEFNHIQPVICISKMDLVNEEERMKIEDYAASYRDAGYDVLLT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S E+ +G+D LL L +V G SGVGKSSL+NALR P D+
Sbjct: 143 SSENGIGIDELLPFLERGISVFAGQSGVGKSSLLNALR--PELELKTDI----------- 189
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+S+ GRGKHTTRHV L+ + G G++ADTPGF+ + + L FP+
Sbjct: 190 ---------ISSHLGRGKHTTRHVELIEI-GQGFVADTPGFSSLEFTDIEAEELNFCFPD 239
Query: 263 V 263
+
Sbjct: 240 I 240
>gi|253575782|ref|ZP_04853117.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844825|gb|EES72838.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 304
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 126/244 (51%), Gaps = 32/244 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK LVGD+VV + + G ++ + R TE++ PP+AN +LLFS
Sbjct: 32 CRGRGIFKKKGITPLVGDRVVYSPTE--NGEGTVDEILPRETELIRPPIANAKLAVLLFS 89
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-------EVLNTWKSRLHTWGYE 138
+ +P L L +FLV E G+ + L K +L++E E++ K+ + GYE
Sbjct: 90 LREPDLNLQLLDKFLVHIEHAGLQALICLTKEDLLEEDGAEETPEIIRQVKAMYESIGYE 149
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S + +G + + RL + +V G SGVGKSSL+NA+
Sbjct: 150 VIVTSSVTGMGTEEVKSRLAGEISVFSGQSGVGKSSLLNAM------------------- 190
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
LG E+S K GRG+HTTRHV L+ L GGY+ADTPGF+Q L++ + L+
Sbjct: 191 LGLSL----ETSEISLKLGRGRHTTRHVELIELENGGYVADTPGFSQLDFLELGIEELSS 246
Query: 259 TFPE 262
F E
Sbjct: 247 CFRE 250
>gi|229071359|ref|ZP_04204582.1| ribosome biogenesis GTPase rsgA [Bacillus cereus F65185]
gi|228711813|gb|EEL63765.1| ribosome biogenesis GTPase rsgA [Bacillus cereus F65185]
Length = 293
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 130/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKATVEAYANDYREMGYVVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPYLENCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|296133289|ref|YP_003640536.1| ribosome small subunit-dependent GTPase A [Thermincola potens JR]
gi|296031867|gb|ADG82635.1| ribosome small subunit-dependent GTPase A [Thermincola potens JR]
Length = 291
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 126/237 (53%), Gaps = 24/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+VVV +G+IE + R +E+ PP+ANV+ ++++ +
Sbjct: 25 CSLRGRFRLENKPALAGDRVVVRETG--KGKGVIEEILPRVSELARPPIANVEMVVIVMA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L R LV AE G+ + +NK +LVD + K+ GY + S
Sbjct: 83 AKDPAINRELLDRMLVMAEYEGLEAVICINKCDLVDLDFPQLLKNTYGKAGYRVILTSTV 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +G++ L L + +VI GPSG GKSSL+NA+ +P L K
Sbjct: 143 TGMGIEDLRSWLAGRISVIAGPSGAGKSSLLNAV----------------QPGLMLK--- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G+VS K GRGKHTTRHV LL L G++ADTPGF+ +L ++ ++LA FPE
Sbjct: 184 ---TGKVSAKIGRGKHTTRHVELLELEVEGFVADTPGFSSLNLPEMETENLAACFPE 237
>gi|154685994|ref|YP_001421155.1| ribosome-associated GTPase [Bacillus amyloliquefaciens FZB42]
gi|429505129|ref|YP_007186313.1| GTPase RsgA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|254766349|sp|A7Z4J8.1|RSGA_BACA2 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|154351845|gb|ABS73924.1| EngC [Bacillus amyloliquefaciens FZB42]
gi|429486719|gb|AFZ90643.1| GTPase RsgA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 296
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELIRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L +E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLAADGESKEAILSYVKDYQAIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFENKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+ST GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 187 ----ELKTNEISTHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEEELGSTFP 241
Query: 262 EV 263
E+
Sbjct: 242 EI 243
>gi|375362222|ref|YP_005130261.1| ribosome-associated GTPase [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421731752|ref|ZP_16170875.1| GTPase RsgA [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451347051|ref|YP_007445682.1| GTPase RsgA [Bacillus amyloliquefaciens IT-45]
gi|371568216|emb|CCF05066.1| ribosome-associated GTPase [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407073965|gb|EKE46955.1| GTPase RsgA [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449850809|gb|AGF27801.1| GTPase RsgA [Bacillus amyloliquefaciens IT-45]
Length = 296
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 125/242 (51%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELIRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L +E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLAADGESKEAILSYVKDYQAIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ D+TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFEDKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 187 ----ELKTNEISAHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEEELGSTFP 241
Query: 262 EV 263
E+
Sbjct: 242 EI 243
>gi|110802523|ref|YP_699023.1| ribosome-associated GTPase [Clostridium perfringens SM101]
gi|122956631|sp|Q0SS84.1|RSGA_CLOPS RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|110683024|gb|ABG86394.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
SM101]
Length = 287
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 118/237 (49%), Gaps = 26/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD+V +I + +G+IE++ +RS+E++ P VANV ++F+
Sbjct: 24 CKARGKFRYNSLKPMVGDRV---TIKVENGKGVIEDIHERSSELIRPTVANVTQAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L RFL E I + LNK +L EE K ++ GYE LF + +
Sbjct: 81 IKNPDINLDLLNRFLTLCEYNDIHAVVCLNKEDLCTEEEKENLKELINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G D+L +RL TV+ GPSG GKS+L+NA H
Sbjct: 141 EGKGFDALKERLEHNITVLCGPSGAGKSTLLNAFIDREH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K GRGKHTTRH L+ + GYL DTPGF + + + SL FPE
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIDVD-NGYLVDTPGFTTLDVTFIDRDSLKYCFPE 234
>gi|357053209|ref|ZP_09114309.1| ribosome small subunit-dependent GTPase A [Clostridium
clostridioforme 2_1_49FAA]
gi|355385976|gb|EHG33020.1| ribosome small subunit-dependent GTPase A [Clostridium
clostridioforme 2_1_49FAA]
Length = 292
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 124/246 (50%), Gaps = 22/246 (8%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
ND C + + + K + LVGD V +D ++ G I+ + RS ++ P VAN
Sbjct: 16 NDGRNHVYQCKAKGVFRSRKIKPLVGDNVEFSVLDEEEKEGNIDAILPRSNVLIRPAVAN 75
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
VD L++F++ P+ L RFLV G+P+T+ NKV+L + +++ +++ G
Sbjct: 76 VDQALVVFAITHPEPNLNLLDRFLVMMGIQGVPVTICFNKVDLGEAGLVDKYRAIYERAG 135
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
YE F S GL+ + + LR +T+V+ GPSGVGKSSL N R P AS
Sbjct: 136 YEVHFVSTYDDTGLEEMRKFLRGKTSVLAGPSGVGKSSLTN--RIQPQAS---------- 183
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
G++S K RG+HTTRH L+ + Y+ DTPGF+ + + L
Sbjct: 184 ----------METGDISRKIERGRHTTRHSELIYVEEETYMMDTPGFSSMFIDFLEPGEL 233
Query: 257 AQTFPE 262
FPE
Sbjct: 234 KHYFPE 239
>gi|291526154|emb|CBK91741.1| ribosome small subunit-dependent GTPase A [Eubacterium rectale DSM
17629]
Length = 302
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 117/237 (49%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K K + LVGD V + +D G +E + R E++ P V+N+D L++F+
Sbjct: 35 CKAKGTFRKQKIKPLVGDIVDIAVLDDEKHIGNVERILPRKNELIRPAVSNIDMALVIFA 94
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L RFL E +P+T+ NK +L+ + KS GY LF S +
Sbjct: 95 SAKPDPNFNLLDRFLCMMEYQHVPVTICFNKKDLITPKEQQELKSIYEPAGYRVLFTSTK 154
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D + L +TT + GPSGVGKSS+IN L+ DV
Sbjct: 155 TGEGIDEIKHILEGRTTTVAGPSGVGKSSIINCLQD--------DV-------------- 192
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH ++P+ G Y+ DTPGF+ + K+ L +PE
Sbjct: 193 QMETGHISEKIERGKHTTRHSEIIPIKDGTYIMDTPGFSSMDVPGFEKEDLWTCYPE 249
>gi|291527112|emb|CBK92698.1| ribosome small subunit-dependent GTPase A [Eubacterium rectale
M104/1]
Length = 302
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 117/237 (49%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K K + LVGD V + +D G +E + R E++ P V+N+D L++F+
Sbjct: 35 CKAKGTFRKQKIKPLVGDIVDIAVLDDEKHIGNVERILPRKNELIRPAVSNIDMALVIFA 94
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L RFL E +P+T+ NK +L+ + KS GY LF S +
Sbjct: 95 SAKPDPNFNLLDRFLCMMEYQHVPVTICFNKKDLITPKEQQELKSIYEPAGYRVLFTSTK 154
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D + L +TT + GPSGVGKSS+IN L+ DV
Sbjct: 155 TGEGIDEIKHILEGRTTTVAGPSGVGKSSIINCLQD--------DV-------------- 192
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH ++P+ G Y+ DTPGF+ + K+ L +PE
Sbjct: 193 QMETGHISEKIERGKHTTRHSEIIPIKDGTYIMDTPGFSSMDVPGFEKEDLWTCYPE 249
>gi|313893414|ref|ZP_07826986.1| ribosome small subunit-dependent GTPase A [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442055|gb|EFR60475.1| ribosome small subunit-dependent GTPase A [Veillonella sp. oral
taxon 158 str. F0412]
Length = 287
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 127/265 (47%), Gaps = 41/265 (15%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D T C VR LK+ + +LVGD+V + G +E++ +R ++ P VAN+
Sbjct: 18 DDTSTIHECKVRGRLKQGRYSLLVGDRVTIS------EDGFVESIHERHNAMVRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHT 134
D ++L+ + +P + L + LV E IP+ L +NK +L+D E ++ +KS
Sbjct: 72 DQVVLVVAAHEPDINELLLNKMLVMIEHADIPIVLCINKCDLMDSDTEAMVELYKS---- 127
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY+ L S G++ L L+ + T GPSGVGKSSL+NA VD
Sbjct: 128 IGYDVLMTSTYDMTGIEDLRHVLQHKVTAFAGPSGVGKSSLLNA------------VDPK 175
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
F + GEVS K RGKHTTRH SL L ++ DTPGF+ V+ +
Sbjct: 176 FA----------FQTGEVSDKIKRGKHTTRHASLYSLDADSFIMDTPGFSAIEFNDVSLE 225
Query: 255 SLAQTFPE------VCAVGLLYMIH 273
L FPE VC Y H
Sbjct: 226 RLPTLFPEFSQYVDVCKFNPCYHEH 250
>gi|296331153|ref|ZP_06873627.1| ribosome-associated GTPase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305674309|ref|YP_003865981.1| ribosome-associated GTPase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296151797|gb|EFG92672.1| ribosome-associated GTPase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305412553|gb|ADM37672.1| ribosome-associated GTPase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 298
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 125/242 (51%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+FS
Sbjct: 29 CRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLLEIKERTNELIRPPICNVDQAVLVFS 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L++ ++ + + GY+
Sbjct: 87 AVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTQDAIQAYAEDYRNIGYDVYL 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + L ++ +D+TTV G SGVGKSSL+NA+ P LG
Sbjct: 147 TSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPDLGL 190
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
K E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 191 K------TNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFP 243
Query: 262 EV 263
E+
Sbjct: 244 EM 245
>gi|373857272|ref|ZP_09600014.1| ribosome small subunit-dependent GTPase A [Bacillus sp. 1NLA3E]
gi|372452922|gb|EHP26391.1| ribosome small subunit-dependent GTPase A [Bacillus sp. 1NLA3E]
Length = 293
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 126/245 (51%), Gaps = 28/245 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + DR G I V +R E++ PP++NVD +L+FS
Sbjct: 25 CRGRGVFRKNKVNPLVGDYVVYQAEN--DREGYILEVKERKNELVRPPISNVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFC 142
+P+ L RFLV E I + + K++L D + + + S GY +
Sbjct: 83 AVEPEFSTTLLDRFLVLIEFNHITPIICITKMDLTDVAQKSSIAQYASDYQKAGYTVILT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S E++LG+ L L +V G SGVGKSSL+N LR D+D IL
Sbjct: 143 SSETELGIKELTPFLEGGISVFAGQSGVGKSSLLNVLR--------PDLD-----IL--- 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+ST GRGKHTTRHV L+ + G G +ADTPGF+ + + L+Q FPE
Sbjct: 187 ------TNEISTHLGRGKHTTRHVELIKV-GNGLVADTPGFSSLEFTDIEAEQLSQCFPE 239
Query: 263 VCAVG 267
+ G
Sbjct: 240 IALEG 244
>gi|423615878|ref|ZP_17591712.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD115]
gi|401260415|gb|EJR66588.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD115]
Length = 293
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 127/241 (52%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMREIVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + + L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESISILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|33860579|ref|NP_892140.1| hypothetical protein PMM0019 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33633521|emb|CAE18478.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 305
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 135/242 (55%), Gaps = 24/242 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+ LC ++ + + V VGD+V+V ID +R IE++ +R+ + P VAN+ ++ +
Sbjct: 34 KFLCKIKKSVNFRNQFVFVGDEVIVYQIDLQSKRATIESLVKRNNLLERPSVANISNIYV 93
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+ S+++PKL + +FL+ +E G+ ++L L K +L+ EE + H WGY+ +
Sbjct: 94 ICSVEEPKLNLSQVNKFLISSEQLGVEVSLVLTKCDLITEEKRLLLIEKFHQWGYQAITL 153
Query: 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
++ + L +LL L + + ++ +GPSGVGK++L+N + ++DN P
Sbjct: 154 NLNNPENLRTLLIELKKKKCSIFMGPSGVGKTTLLNMI--------IPNLDNKTAP---- 201
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
VS+K RGK+TTR+V L LS Y+ DTPGFN + L++ + L+ +P
Sbjct: 202 ----------VSSKIKRGKNTTRNVELFSLSSKSYIVDTPGFNIQT-LEIDIRELSNLYP 250
Query: 262 EV 263
E+
Sbjct: 251 EI 252
>gi|152976227|ref|YP_001375744.1| ribosome-associated GTPase [Bacillus cytotoxicus NVH 391-98]
gi|254766350|sp|A7GRJ1.1|RSGA_BACCN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|152024979|gb|ABS22749.1| ribosome small subunit-dependent GTPase A [Bacillus cytotoxicus NVH
391-98]
Length = 293
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 129/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF+R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQAENQ--NEGYVLEVFERKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE +++ ++ + GY LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEPMRKMVESYANDYREMGYAVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SV + ++ L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SVHAAESIEILKPFLEECVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELISI-GSGLVADTPGFSSLDFIDIEVEDLTFCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|443632753|ref|ZP_21116932.1| GTPase RsgA [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443347576|gb|ELS61634.1| GTPase RsgA [Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 298
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 126/242 (52%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + ++ G + + +R+ E++ PP+ NVD +L+FS
Sbjct: 29 CRGRGIFRKNKITPLVGDYVVYQAEN--NKEGYLLEIKERTNELIRPPICNVDQAVLVFS 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L++++ V+ + GY+
Sbjct: 87 AVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTRDVIQAYAEDYRKIGYDVYL 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + L ++ +D+TTV G SGVGKSSL+NA+ P LG
Sbjct: 147 TSSKDQDSLTDIIPHFKDKTTVFAGQSGVGKSSLLNAI----------------SPELG- 189
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 190 -----LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFP 243
Query: 262 EV 263
++
Sbjct: 244 DI 245
>gi|255282551|ref|ZP_05347106.1| ribosome small subunit-dependent GTPase A [Bryantella formatexigens
DSM 14469]
gi|255266844|gb|EET60049.1| ribosome small subunit-dependent GTPase A [Marvinbryantia
formatexigens DSM 14469]
Length = 291
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 118/237 (49%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + ++ + LVGD V + +D + G IE + R ++ P VAN+D L++F+
Sbjct: 24 CRAKGIFRRDGIKPLVGDNVELNVLDETEHTGNIEKLLPRRNALIRPAVANIDQALVIFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+PK L RFLV E + + NK ++V++E + G LF S
Sbjct: 84 AAKPKPNLNLLDRFLVAMEKQSVKSVICFNKQDIVEKEACERLREIYENCGCRVLFVSAL 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ GL + L+ +TT + GPSGVGKSSL+N L PHA
Sbjct: 144 TQEGLSGVRAILKGKTTAVAGPSGVGKSSLVNLL--VPHAQ------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G +S K RGKHTTRH +L + +L DTPGF+ S+ + K+ L + FPE
Sbjct: 183 -MQTGAISEKIDRGKHTTRHSEILAVDNDTFLCDTPGFSSLSVWDMEKEELKEYFPE 238
>gi|350265891|ref|YP_004877198.1| ribosome small subunit-dependent GTPase A [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349598778|gb|AEP86566.1| ribosome small subunit-dependent GTPase A [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 298
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 125/242 (51%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+FS
Sbjct: 29 CRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLLEIKERTNELIRPPICNVDQAVLVFS 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L++ ++ + + GY+
Sbjct: 87 AVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTQDAIQAYAEDYRNIGYDVYL 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + L ++ +D+TTV G SGVGKSSL+NA+ P LG
Sbjct: 147 TSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPELGL 190
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
K E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 191 K------TNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFP 243
Query: 262 EV 263
++
Sbjct: 244 DI 245
>gi|384159438|ref|YP_005541511.1| GTPase RsgA [Bacillus amyloliquefaciens TA208]
gi|384168485|ref|YP_005549863.1| ribosome-associated GTPase [Bacillus amyloliquefaciens XH7]
gi|328553526|gb|AEB24018.1| GTPase RsgA [Bacillus amyloliquefaciens TA208]
gi|341827764|gb|AEK89015.1| ribosome-associated GTPase [Bacillus amyloliquefaciens XH7]
Length = 296
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELVRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L + E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLASDGESKEKILSYMKDYQAIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFANKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+ST GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 187 ----ELKTNEISTHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEEELGSTFP 241
Query: 262 EV 263
E+
Sbjct: 242 EI 243
>gi|429759374|ref|ZP_19291873.1| ribosome small subunit-dependent GTPase A [Veillonella atypica KON]
gi|429179650|gb|EKY20889.1| ribosome small subunit-dependent GTPase A [Veillonella atypica KON]
Length = 287
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 122/248 (49%), Gaps = 35/248 (14%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D+ G C VR +KK K +LVGD+V G +E + R ++ P VAN+
Sbjct: 18 DEFGTIHECKVRGRIKKSKYSLLVGDRV------EFSEDGFVETILPRHNSMIRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHT 134
D ++L+ + P + L + LV E IP+ L +NK ++ D + +++ +KS
Sbjct: 72 DQVILVVASHNPDINELLLDKMLVMIEHADIPVILCINKCDVGDASTDALIDKYKS---- 127
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + S + +G+D L L+ + T GPSGVGKSSL+NA VD
Sbjct: 128 IGYHVITTSAINHIGIDELRNHLQHKVTAFAGPSGVGKSSLLNA------------VDEK 175
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
F + GE+S K RGKHTTRH SL L+ ++ DTPGF+ +T +
Sbjct: 176 FA----------FQTGEISDKIKRGKHTTRHASLFSLNADSFIMDTPGFSSIEFTDITLE 225
Query: 255 SLAQTFPE 262
L FPE
Sbjct: 226 RLPTLFPE 233
>gi|147678115|ref|YP_001212330.1| GTPase [Pelotomaculum thermopropionicum SI]
gi|146274212|dbj|BAF59961.1| predicted GTPase [Pelotomaculum thermopropionicum SI]
Length = 294
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 127/243 (52%), Gaps = 32/243 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C++R + R+VLVGD+V + R G+IE V R T ++ PPVANVD +++F+
Sbjct: 31 CLLRGRFRYENRQVLVGDRVYLKPRH--GRAGVIEEVLPRRTVLVRPPVANVDQAVIVFA 88
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+ P P L RFLV I + NKV+L + E+++ ++ R Y +
Sbjct: 89 VKDPDPSPRLLDRFLVVVHMNKIEPLICFNKVDLAESGRIELISRYRER-----YRVVAT 143
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S S GL L + LR + +V GPSGVGKS+++NA+ P L K
Sbjct: 144 SARSGEGLSLLRESLRGRVSVFAGPSGVGKSTILNAIL----------------PGLNLK 187
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S K RG+HTTRHV L+ L GG +ADTPGF+ L + + LA FPE
Sbjct: 188 ------TGEISAKLKRGRHTTRHVELVALPEGGLVADTPGFSSLDLPDLKPEELAGCFPE 241
Query: 263 VCA 265
+ A
Sbjct: 242 IEA 244
>gi|110799288|ref|YP_696423.1| ribosome-associated GTPase [Clostridium perfringens ATCC 13124]
gi|123148670|sp|Q0TPL7.1|RSGA_CLOP1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|110673935|gb|ABG82922.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
ATCC 13124]
Length = 287
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 118/237 (49%), Gaps = 26/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD+V +I + +G+IE++ +RS+E++ P VANV ++F+
Sbjct: 24 CKARGKFRYNSLKPMVGDRV---TIKVENGKGVIEDIHERSSELIRPTVANVTQAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L RFL E I + LNK +L EE K ++ GYE LF + +
Sbjct: 81 IKNPDINLDLLNRFLTLCEYNDIHAVVCLNKEDLCTEEEKENLKELINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G D+L +RL TV+ GPSG GKS+L+N+ H
Sbjct: 141 EGKGFDALKERLEHNITVLCGPSGAGKSTLLNSFIDREH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K GRGKHTTRH L+ + GYL DTPGF + + + SL FPE
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIDVD-NGYLVDTPGFTTLDVTFIDRDSLKYCFPE 234
>gi|288553110|ref|YP_003425045.1| GTPase RsgA [Bacillus pseudofirmus OF4]
gi|288544270|gb|ADC48153.1| ribosome-associated GTPase [Bacillus pseudofirmus OF4]
Length = 298
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 133/249 (53%), Gaps = 33/249 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K K + LVGD+V + + D G I +VF R E++ PP++N+D LL+FS
Sbjct: 25 CRGRGNFRKRKIKPLVGDEVEFEAENRTD--GYILDVFDRKNELVRPPISNIDQALLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E+ I + ++KV+L+ + + ++ + GY +
Sbjct: 83 AKEPDFSPLLLDRFLVHIEANNIKPVIIISKVDLLLPNELAEIKEYQKQYEAIGYTVILT 142
Query: 143 SVESKLG-----LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ +++ + +L ++DQ TVI G SGVGKSSL+N L+ P
Sbjct: 143 TNQNQSSNQTNEMVEILSCIKDQVTVIAGQSGVGKSSLLNVLK----------------P 186
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
L + ++S+ GRGKHTTRHV LL + GGG +ADTPGF+ +++ + L+
Sbjct: 187 EL------EIETNQISSHLGRGKHTTRHVELLAV-GGGLIADTPGFSSLDFIEMEPEDLS 239
Query: 258 QTFPEVCAV 266
FPE+ +V
Sbjct: 240 SCFPEMASV 248
>gi|238916660|ref|YP_002930177.1| GTPase EngC [Eubacterium eligens ATCC 27750]
gi|238872020|gb|ACR71730.1| GTPase EngC [Eubacterium eligens ATCC 27750]
Length = 296
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 18/237 (7%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + + LVGD V + ID + +G + ++ R E++ P AN+D +++F+
Sbjct: 25 CKAKGIFRNRHIKPLVGDNVEIEVIDKDNFKGNVVDILPRKNELIRPASANIDQAMVIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P+ L +F++ +P + NK EL D+E N K + G E +F S +
Sbjct: 85 VKTPEPNFNLLDKFILMMNYQDVPTVVCFNKEELADDEYKNELKKKYEGCGCECIFISAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +G+D +++ L+ +TTV+ GPSGVGKS+L N L P + +V
Sbjct: 145 NNIGIDRIMEVLKGKTTVLAGPSGVGKSTLTNLL--IPDMEEQGEV-------------- 188
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GEVS + GRG+HTTRH + + Y+ DTPGF +L V K+ L F E
Sbjct: 189 -SQTGEVS-RIGRGRHTTRHSEIYNVCKETYICDTPGFTSLNLPDVEKEDLRFYFEE 243
>gi|452855525|ref|YP_007497208.1| GTPase involved in ribosome and sacculus morphogenesis [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452079785|emb|CCP21542.1| GTPase involved in ribosome and sacculus morphogenesis [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 296
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 126/242 (52%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELIRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L +E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLAADGESKEAILSYVQDYQAIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFENKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L+ TFP
Sbjct: 187 ----ELKTNEISAHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEEELSSTFP 241
Query: 262 EV 263
E+
Sbjct: 242 EI 243
>gi|18310719|ref|NP_562653.1| ribosome-associated GTPase [Clostridium perfringens str. 13]
gi|168214214|ref|ZP_02639839.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
CPE str. F4969]
gi|169342744|ref|ZP_02863784.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
C str. JGS1495]
gi|182625864|ref|ZP_02953630.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
D str. JGS1721]
gi|422346407|ref|ZP_16427321.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
WAL-14572]
gi|422874657|ref|ZP_16921142.1| GTPase RsgA [Clostridium perfringens F262]
gi|38257693|sp|Q8XJL9.1|RSGA_CLOPE RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|18145400|dbj|BAB81443.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|169299250|gb|EDS81320.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
C str. JGS1495]
gi|170714287|gb|EDT26469.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
CPE str. F4969]
gi|177908898|gb|EDT71390.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
D str. JGS1721]
gi|373225952|gb|EHP48279.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
WAL-14572]
gi|380304298|gb|EIA16587.1| GTPase RsgA [Clostridium perfringens F262]
Length = 287
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 118/237 (49%), Gaps = 26/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD+V +I + +G+IE++ +RS+E++ P VANV ++F+
Sbjct: 24 CKARGKFRYNSLKPMVGDRV---TIKVENGKGVIEDIHERSSELIRPTVANVTQAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L RFL E I + LNK +L EE K ++ GYE LF + +
Sbjct: 81 IKNPDINLDLLNRFLTLCEYNDIHAVVCLNKEDLCTEEEKENLKELINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G D+L +RL TV+ GPSG GKS+L+N+ H
Sbjct: 141 EGKGFDALKERLEHNITVLCGPSGAGKSTLLNSFIDREH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K GRGKHTTRH L+ + GYL DTPGF + + + SL FPE
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIDVD-NGYLVDTPGFTTLDVTFIDRDSLKYCFPE 234
>gi|168217024|ref|ZP_02642649.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
NCTC 8239]
gi|182380986|gb|EDT78465.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
NCTC 8239]
Length = 287
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 118/237 (49%), Gaps = 26/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD+V +I + +G+IE++ +RS+E++ P VANV ++F+
Sbjct: 24 CKARGKFRYNSLKPMVGDRV---TIKVENGKGVIEDIHERSSELIRPTVANVTQAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L RFL E I + LNK +L EE K ++ GYE LF + +
Sbjct: 81 IKNPDINLDLLNRFLTLCEYNDIHAVVCLNKEDLCTEEEKENLKELINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G D+L +RL TV+ GPSG GKS+L+N+ H
Sbjct: 141 EGKGFDALKERLEHNITVLCGPSGAGKSTLLNSFIDREH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K GRGKHTTRH L+ + GYL DTPGF + + + SL FPE
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIDVD-NGYLVDTPGFTTLDVTFIDRDSLKYCFPE 234
>gi|283797838|ref|ZP_06346991.1| ribosome small subunit-dependent GTPase A [Clostridium sp. M62/1]
gi|291074526|gb|EFE11890.1| ribosome small subunit-dependent GTPase A [Clostridium sp. M62/1]
gi|295091949|emb|CBK78056.1| ribosome small subunit-dependent GTPase A [Clostridium cf.
saccharolyticum K10]
Length = 292
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 121/249 (48%), Gaps = 22/249 (8%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+D G C + + + K + LVGD V +D + G I +V +R ++ P V+N
Sbjct: 16 HDGQGRVYECKAKGVFRNRKIKPLVGDNVEFEILDDREATGNIVSVLERKNSLIRPAVSN 75
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
VD L++F++ +P L RFLV E IP + NK++L EE + ++ G
Sbjct: 76 VDQALVVFAITEPMPNLNLLDRFLVMMERQQIPAVICFNKIDLSSEEEMEKLRAIYGPAG 135
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
YE F S + GL + + +R +TTV+ GPSGVGKSSL N ++ P A
Sbjct: 136 YEIHFISTYEEAGLKEIHELIRHKTTVLAGPSGVGKSSLTNFIQ--PDAC---------- 183
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
G VS K RGKHTTRH L + Y+ DTPGF+ + + + L
Sbjct: 184 ----------METGVVSEKIKRGKHTTRHCELFFVEENTYMMDTPGFSSMYIEDIKPEEL 233
Query: 257 AQTFPEVCA 265
+ FPE A
Sbjct: 234 KEYFPEFAA 242
>gi|153815682|ref|ZP_01968350.1| hypothetical protein RUMTOR_01918 [Ruminococcus torques ATCC 27756]
gi|317501931|ref|ZP_07960115.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331088255|ref|ZP_08337174.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336440092|ref|ZP_08619691.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145846923|gb|EDK23841.1| ribosome small subunit-dependent GTPase A [Ruminococcus torques
ATCC 27756]
gi|316896611|gb|EFV18698.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330408499|gb|EGG87965.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336014441|gb|EGN44290.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 299
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 119/244 (48%), Gaps = 29/244 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K + LVGD V + +D +++G I + R E++ P VAN+D L++F+
Sbjct: 25 CKAKGIFRKDGVKPLVGDNVEIEVLDEEEKKGNIREILTRKNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +PK L RFLV E IP+ L NK ++ E ++ + + GY F S +
Sbjct: 85 VTKPKPHFNLLDRFLVMMEQKKIPVILCFNKSDIAKESDISKMEEIYRSCGYPVFFTSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ + + L +TTV+ GPSGVGKSSLIN L+S
Sbjct: 145 EGWKIEEVKKILHGKTTVLAGPSGVGKSSLINLLQSEVMME------------------- 185
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLS-------GGGYLADTPGFNQPSLLKVTKQSLAQ 258
G +S K RGKHTTRH LL L G Y+ DTPGF+ + K+ L
Sbjct: 186 ---TGSISRKIDRGKHTTRHSELLVLEEDEKVEDCGSYIVDTPGFSSLYVNDFEKEQLKY 242
Query: 259 TFPE 262
FPE
Sbjct: 243 YFPE 246
>gi|123965253|ref|YP_001010334.1| GTPase [Prochlorococcus marinus str. MIT 9515]
gi|123199619|gb|ABM71227.1| Predicted GTPase [Prochlorococcus marinus str. MIT 9515]
Length = 305
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 135/258 (52%), Gaps = 24/258 (9%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
N + LC +R + + V VGD+V++ ID +R +IE++ +R + P VAN
Sbjct: 28 NSDSNKNFLCKIRKSVNFRNQLVFVGDEVILSQIDTTRKRAIIESLVKRKNLLERPSVAN 87
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
+ ++ ++ S+ +PKL + RFL+ AE G+ ++L L K +L+ E+ + WG
Sbjct: 88 ISNIYVICSVQEPKLNLSQVNRFLISAEQMGVEVSLVLTKCDLITEQKRILLVEKFKKWG 147
Query: 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
Y+ + ++ S +L+ L + + ++ +GPSGVGK++L+N + + + A+
Sbjct: 148 YQAITLNLNSPKNFTNLMIELKKKKCSIFIGPSGVGKTTLLNMIIPGLNNTTAS------ 201
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
VS+K RGK+TTR+V L LS Y+ DTPGFN + L++ +
Sbjct: 202 ----------------VSSKIKRGKNTTRNVELFSLSSKSYIVDTPGFNMQT-LEIDIRE 244
Query: 256 LAQTFPEVCAVGLLYMIH 273
L +PE+ ++ IH
Sbjct: 245 LPNLYPEIYRQVVIKGIH 262
>gi|394993916|ref|ZP_10386655.1| GTPase RsgA [Bacillus sp. 916]
gi|393805240|gb|EJD66620.1| GTPase RsgA [Bacillus sp. 916]
Length = 296
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 125/242 (51%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELIRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L +E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLAADGESKEAILSYVKDYQAIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFENKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 187 ----ELKTNEISAHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEEELGSTFP 241
Query: 262 EV 263
E+
Sbjct: 242 EI 243
>gi|374307509|ref|YP_005053940.1| ribosome small subunit-dependent GTPase A [Filifactor alocis ATCC
35896]
gi|291166478|gb|EFE28524.1| ribosome small subunit-dependent GTPase A [Filifactor alocis ATCC
35896]
Length = 296
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 118/239 (49%), Gaps = 22/239 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+C R L K K+ +LVGDKV + D V + G+IE + R+ ++ P +ANV H LL
Sbjct: 23 FICKARGLFKNKKQSLLVGDKVNIVITDNVSKDGIIEKIIPRTNILIRPSIANVSHALLF 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FS+ P + RF+V A+ + +TL +KV+L D L GY + S
Sbjct: 83 FSIKNPDPNLSLIDRFIVLAQEQQLKITLCFSKVDLDDGIRLQKLLEIYKKVGYPVISIS 142
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
L+ L L+ TVI GPSG GKSS IN L S+
Sbjct: 143 TYDNKNLEELKNTLKSHITVIAGPSGAGKSSFINTL---------------------SQN 181
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
F + + VS+K GRG+HTTRHV L+ + ++ADTPGF+ SL + L + F E
Sbjct: 182 F-NIKTNSVSSKIGRGRHTTRHVELMRIGTDSWIADTPGFSSLSLSHIPYTELKEYFLE 239
>gi|410667759|ref|YP_006920130.1| ribosome biogenesis GTPase RsgA [Thermacetogenium phaeum DSM 12270]
gi|409105506|gb|AFV11631.1| ribosome biogenesis GTPase RsgA [Thermacetogenium phaeum DSM 12270]
Length = 291
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 120/227 (52%), Gaps = 27/227 (11%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTR 98
+LVGD+V+ ID + G+IE + R I PPVANVD ++L+ S+ QP+ + L R
Sbjct: 37 LLVGDRVLFTKID--SKEGLIEAILPRKNSIQRPPVANVDQMILVVSLAQPEPDLKLLNR 94
Query: 99 FLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRL- 157
LV E + + + NKV+LV E + + GY L S K+G+ L + L
Sbjct: 95 TLVLGEMEKLEILICFNKVDLVAREKAESLEEIYRKAGYRTLLTSALEKIGVTELYRSLA 154
Query: 158 -RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
+ +V+ GPSG GKS+L+N + P S A GE+S K
Sbjct: 155 AERRISVLAGPSGAGKSTLLNTI--DPGLSLAT--------------------GEISPKL 192
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
RG+HTTR+V LLP+ G GY+ADTPGF+ L + + LA FPE+
Sbjct: 193 KRGRHTTRYVQLLPI-GNGYVADTPGFSNLELPSIKRTELAHYFPEI 238
>gi|410727111|ref|ZP_11365334.1| ribosome small subunit-dependent GTPase A [Clostridium sp.
Maddingley MBC34-26]
gi|410599446|gb|EKQ53999.1| ribosome small subunit-dependent GTPase A [Clostridium sp.
Maddingley MBC34-26]
Length = 290
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 126/238 (52%), Gaps = 27/238 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD V +I +G+IE + +R ++++ P VANV ++F+
Sbjct: 24 CKARGKFRHKDIKPMVGDNV---TIKMEHGKGVIEEIHKRKSQLVRPTVANVSLAFIVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FL+ E I + + LNK++LV EE K R++ GYE LF + +
Sbjct: 81 VKNPDINFDLLNKFLILCEFNNIEVIVCLNKIDLVTEEEREEIKKRINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G+D L ++++ TTV GPSG GKS+LIN L ++ H
Sbjct: 141 VGIGIDGLKEKIKGNTTVFCGPSGAGKSTLINKLSNAEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT-KQSLAQTFPE 262
G+VS K GRGKHTTRH L+ +S GY+ DTPGF+ + + K SL FPE
Sbjct: 180 -METGKVSEKIGRGKHTTRHSELIEVS-DGYIVDTPGFSTLEIKDLMDKDSLKYCFPE 235
>gi|325261904|ref|ZP_08128642.1| ribosome small subunit-dependent GTPase A [Clostridium sp. D5]
gi|324033358|gb|EGB94635.1| ribosome small subunit-dependent GTPase A [Clostridium sp. D5]
Length = 292
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 112/219 (51%), Gaps = 22/219 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V + +D ++ G I + R E++ P VANVD L++F+
Sbjct: 25 CKAKGVFRKEKIKPLVGDDVDIEILDAAEKTGNIVQILSRKNELIRPAVANVDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +PK L RFLV ES IP+ L NK ++ + L + GY+ +F S
Sbjct: 85 VTEPKPHFNLLDRFLVMMESKEIPVVLCFNKKDIATQPELKELQEIYRACGYQVIFTSAL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ + + L +TTVI GPSGVGKSSLIN L++
Sbjct: 145 NEENIGIVKDVLLGKTTVIAGPSGVGKSSLINLLQTEIQ--------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244
G +S K RGKHTTRH L+ + G Y+ DTPGF+
Sbjct: 184 -METGSISRKIARGKHTTRHSELITIDGNSYIMDTPGFS 221
>gi|168210630|ref|ZP_02636255.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
B str. ATCC 3626]
gi|170711303|gb|EDT23485.1| ribosome small subunit-dependent GTPase A [Clostridium perfringens
B str. ATCC 3626]
Length = 287
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 118/237 (49%), Gaps = 26/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD+V +I + +G+IE++ +RS+E++ P VANV ++F+
Sbjct: 24 CKARGKFRYNSLKPMVGDRV---TIKVENGKGVIEDIHERSSELIRPTVANVTQAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L RFL E I + LNK +L EE K ++ GYE LF + +
Sbjct: 81 IKNPDINLDLLNRFLTLCEYNDIHAVVCLNKEDLCTEEEKENLKELINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G D+L +RL TV+ GPSG GKS+L+N+ H
Sbjct: 141 EGKGFDALKERLEYNITVLCGPSGAGKSTLLNSFIDREH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K GRGKHTTRH L+ + GYL DTPGF + + + SL FPE
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIDVD-NGYLVDTPGFTTLDVTFIDRDSLKYCFPE 234
>gi|229098330|ref|ZP_04229277.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-29]
gi|229117347|ref|ZP_04246725.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock1-3]
gi|423378300|ref|ZP_17355584.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG1O-2]
gi|423464482|ref|ZP_17441250.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG6O-1]
gi|423533824|ref|ZP_17510242.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB2-9]
gi|423540907|ref|ZP_17517298.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB4-10]
gi|423547145|ref|ZP_17523503.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB5-5]
gi|423623063|ref|ZP_17598841.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD148]
gi|228666247|gb|EEL21711.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock1-3]
gi|228685228|gb|EEL39159.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-29]
gi|401172095|gb|EJQ79316.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB4-10]
gi|401178866|gb|EJQ86039.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB5-5]
gi|401259836|gb|EJR66010.1| ribosome small subunit-dependent GTPase A [Bacillus cereus VD148]
gi|401636566|gb|EJS54320.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG1O-2]
gi|402420749|gb|EJV53020.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG6O-1]
gi|402464043|gb|EJV95743.1| ribosome small subunit-dependent GTPase A [Bacillus cereus HuB2-9]
Length = 293
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 126/241 (52%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E + + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + + L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIAILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|229104423|ref|ZP_04235092.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-28]
gi|407706320|ref|YP_006829905.1| DUTPase [Bacillus thuringiensis MC28]
gi|228679121|gb|EEL33329.1| ribosome biogenesis GTPase rsgA [Bacillus cereus Rock3-28]
gi|407384005|gb|AFU14506.1| ribosome biogenesis GTPase rsgA [Bacillus thuringiensis MC28]
Length = 293
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 126/241 (52%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E + + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + + L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIAILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|357012406|ref|ZP_09077405.1| RsgA [Paenibacillus elgii B69]
Length = 303
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 130/254 (51%), Gaps = 32/254 (12%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++T + C R + KK LVGD+VV G + + G ++ + RS+ ++ PPVAN
Sbjct: 20 DEQTTKAVQCRARGIFKKRGISPLVGDRVVYGLTE--NGEGTVDEILPRSSVLIRPPVAN 77
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE--------EVLNTW 128
+D +L+FS+ +P L L +FLV ES G+ + L K +L+ E E L
Sbjct: 78 IDLAVLVFSVTEPALNLPLLDKFLVHTESAGLDTLICLTKHDLLSEGSSPDGVSEELAPV 137
Query: 129 KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
+ GY L S + +G+ + RL + V+ G SGVGKSSL+NA+ P S
Sbjct: 138 IRLYESIGYPMLVTSAKEGIGVSEVFGRLAGRIGVVAGQSGVGKSSLLNAM--VPGLSLE 195
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
+ E+S K GRGKHTTRHV L+ L GG +ADTPGF+Q
Sbjct: 196 TN--------------------EISMKLGRGKHTTRHVELIRLQNGGLIADTPGFSQLDF 235
Query: 249 LKVTKQSLAQTFPE 262
L+V + L+ F E
Sbjct: 236 LQVDAEGLSGAFRE 249
>gi|51892492|ref|YP_075183.1| GTPase [Symbiobacterium thermophilum IAM 14863]
gi|51856181|dbj|BAD40339.1| putative GTPase [Symbiobacterium thermophilum IAM 14863]
Length = 292
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 126/244 (51%), Gaps = 26/244 (10%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G E+ C R + + +V GD+V V D G IE V R + PPVANVD
Sbjct: 20 GREVECRPRGKFRLDRLQVRAGDEVEVTLAP--DGEGRIEKVLPRRNCLERPPVANVDQC 77
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT--WGYE 138
L++F++ +P+ + L R LV E G+ + LNK++LV+E + + RL+ GY
Sbjct: 78 LVVFTLVEPEADYLFLDRVLVHVEQAGVEPLILLNKIDLVEEADVAAF-VRLYGDLVGYR 136
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
L S GLD L + L +T+V+ G SGVGKS L+ AL P +D
Sbjct: 137 VLPISAAEGRGLDELRRHLAGKTSVLAGHSGVGKSRLVRAL--EPQRADV---------- 184
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
R+G++S KS +G+HTTRHV L+PL+GGG LAD PGF + K +L
Sbjct: 185 ---------RIGDLSAKSRKGRHTTRHVELIPLTGGGLLADAPGFTYLEFQDIDKWTLRD 235
Query: 259 TFPE 262
F E
Sbjct: 236 CFRE 239
>gi|354582483|ref|ZP_09001385.1| ribosome small subunit-dependent GTPase A [Paenibacillus lactis
154]
gi|353199882|gb|EHB65344.1| ribosome small subunit-dependent GTPase A [Paenibacillus lactis
154]
Length = 302
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 124/239 (51%), Gaps = 26/239 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK LVGD+V+ + + G ++ + RS+E++ PPVANVD +LLFS
Sbjct: 34 CRARGIFKKRGISPLVGDRVMYSLTE--NGEGTVDEILPRSSELIRPPVANVDLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD--EEVLNTWKSRLHTWGYEPLFCS 143
+ +P L L +FLV E G+ + L K +L D +E K GYE + S
Sbjct: 92 VKEPDLNLLLLDKFLVHIEHAGLDAVIVLTKQDLTDASDESAEKVKRMYEEIGYEVMITS 151
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+G+ + RL + +V G SGVGKS+L+NAL P L +
Sbjct: 152 SLQGIGVQQVKDRLAGEISVFSGQSGVGKSTLLNALM----------------PGLALE- 194
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S + GRG+HTTRHV L+ L GGY+ADTPGF+Q L++ + L+ F E
Sbjct: 195 -----TSEISLRLGRGRHTTRHVELIELDNGGYVADTPGFSQLDFLELGVEELSSCFRE 248
>gi|303228526|ref|ZP_07315354.1| ribosome small subunit-dependent GTPase A [Veillonella atypica
ACS-134-V-Col7a]
gi|302516773|gb|EFL58687.1| ribosome small subunit-dependent GTPase A [Veillonella atypica
ACS-134-V-Col7a]
Length = 287
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 122/248 (49%), Gaps = 35/248 (14%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D+ G C VR +KK K +LVGD+V G +E + R ++ P VAN+
Sbjct: 18 DEFGTIHECKVRGRIKKSKYSLLVGDRV------EFSEDGFVETILPRHNSMIRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHT 134
D ++L+ + P + L + LV E IP+ L +NK ++ D + +++ +KS
Sbjct: 72 DQVILVVASHNPDINELLLDKMLVMIEHADIPVILCINKCDVGDASTDVLIDKYKS---- 127
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + S + +G+D L L+ + T GPSGVGKSSL+NA VD
Sbjct: 128 IGYHVITTSAINHIGIDELRNHLQHKITAFAGPSGVGKSSLLNA------------VDEK 175
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
F + GE+S K RGKHTTRH SL L+ ++ DTPGF+ +T +
Sbjct: 176 FA----------FQTGEISDKIKRGKHTTRHASLFSLNADSFIMDTPGFSSIEFTDITLE 225
Query: 255 SLAQTFPE 262
L FPE
Sbjct: 226 RLPTLFPE 233
>gi|217077832|ref|YP_002335550.1| ribosome small subunit-dependent GTPase A [Thermosipho africanus
TCF52B]
gi|217037687|gb|ACJ76209.1| ribosome small subunit-dependent GTPase A [Thermosipho africanus
TCF52B]
Length = 287
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 135/244 (55%), Gaps = 25/244 (10%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+TG E LC +R K+ K R +VGD V I V + G+IEN+ R E+ P +AN+D
Sbjct: 21 ETGEEFLCKLRGKFKEQKIRPIVGDIVEYSPI--VSKEGVIENILNRKNELPRPKIANID 78
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
++++ S+ +P++ L ++LV E+ +P + LNK++L+ +E +N +K ++ Y
Sbjct: 79 QVVVVTSLRKPEVPLQILDKYLVLVENAKLPAVIVLNKIDLLTKEEINKFKY-IYEKIYP 137
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
F S ++K G++ L + +++ + + G SGVGKSS++NA+ +P S
Sbjct: 138 VYFVSAKTKEGIEELKEVFKNKISTMAGMSGVGKSSILNAI--NPGLS------------ 183
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+V +VS K RG+HTT + L+ GG++ADTPGF + + + L +
Sbjct: 184 --------LKVNDVSEKLDRGRHTTTVIELMHFDFGGWIADTPGFANLDISHIEHEELKR 235
Query: 259 TFPE 262
FPE
Sbjct: 236 LFPE 239
>gi|337750133|ref|YP_004644295.1| protein RsgA [Paenibacillus mucilaginosus KNP414]
gi|379722971|ref|YP_005315102.1| protein RsgA [Paenibacillus mucilaginosus 3016]
gi|386725756|ref|YP_006192082.1| protein RsgA [Paenibacillus mucilaginosus K02]
gi|336301322|gb|AEI44425.1| RsgA [Paenibacillus mucilaginosus KNP414]
gi|378571643|gb|AFC31953.1| RsgA [Paenibacillus mucilaginosus 3016]
gi|384092881|gb|AFH64317.1| protein RsgA [Paenibacillus mucilaginosus K02]
Length = 302
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 129/254 (50%), Gaps = 32/254 (12%)
Query: 17 NDKTGVE-LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
+ GVE + C R + KK LVGD+V + + G + V R++E++ PPVA
Sbjct: 19 EEAAGVESVQCRARGVFKKRGISPLVGDRVQFELTE--NGEGTVTEVLPRTSELIRPPVA 76
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV-------LNTW 128
NVD +L+FS+D+P L L +FLV ES G+ +AL K +L++ + L
Sbjct: 77 NVDQAVLVFSIDEPALNLPLLDKFLVHTESAGLDTIIALTKRDLIERQEGEAEAVDLGPV 136
Query: 129 KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
+ GY S + +G++ +L +L + +V G SGVGKSSL+NA+ P S
Sbjct: 137 VELYESIGYPMFVTSAKEGIGVEDVLAKLAGRISVFAGQSGVGKSSLLNAM--VPGLSLE 194
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
+ +S K GRGKHTTRHV L+ L GG +ADTPGF+Q
Sbjct: 195 TNA--------------------ISMKLGRGKHTTRHVELIRLQNGGLVADTPGFSQLDF 234
Query: 249 LKVTKQSLAQTFPE 262
L+V + L F E
Sbjct: 235 LQVEAEGLGGCFRE 248
>gi|303232206|ref|ZP_07318909.1| ribosome small subunit-dependent GTPase A [Veillonella atypica
ACS-049-V-Sch6]
gi|302513312|gb|EFL55351.1| ribosome small subunit-dependent GTPase A [Veillonella atypica
ACS-049-V-Sch6]
Length = 287
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 121/248 (48%), Gaps = 35/248 (14%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D+ G C VR +KK K +LVGD+V G +E + R ++ P VAN+
Sbjct: 18 DEFGTIHECKVRGRIKKSKYSLLVGDRV------EFSEDGFVETILPRHNSMIRPAVANI 71
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHT 134
D ++L+ + P + L + LV E IP+ L +NK ++ D +++ +KS
Sbjct: 72 DQVILVVASHNPDINELLLDKMLVMIEHADIPVILCINKYDVGDASTDVLIDKYKS---- 127
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + S + +G+D L L+ + T GPSGVGKSSL+NA VD
Sbjct: 128 IGYHVITTSAINHIGIDELRNHLQHKITAFAGPSGVGKSSLLNA------------VDEK 175
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
F + GE+S K RGKHTTRH SL L+ ++ DTPGF+ +T +
Sbjct: 176 FA----------FQTGEISDKIKRGKHTTRHASLFSLNADSFIMDTPGFSSIEFTDITLE 225
Query: 255 SLAQTFPE 262
L FPE
Sbjct: 226 RLPTLFPE 233
>gi|421858981|ref|ZP_16291230.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
gi|410831500|dbj|GAC41667.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
Length = 305
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 128/254 (50%), Gaps = 34/254 (13%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ G + C R + KK LVGD VV + + G+++ + R++E++ PP+ANV
Sbjct: 22 QGGETVQCRARGIFKKKGVSPLVGDCVVYSFTE--NGEGVVDEIDPRASELIRPPIANVS 79
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTW 135
L+FSM +P+L L +FLV E + + L K +L+D EE + R+
Sbjct: 80 LAALVFSMTEPELNMHLLDKFLVHIEHAEVEAVILLTKWDLLDRLPEEESARMRCRMEEL 139
Query: 136 -------GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
GYE + S + G + RL DQ +V G SGVGKSSL+NA+ P S
Sbjct: 140 IALYQRIGYEVIVTSAKGGFGYQGVADRLADQISVFAGQSGVGKSSLLNAM--LPGVSLE 197
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
+ ++S + GRGKHTTRHV LLPL GGY+ADTPGF+Q
Sbjct: 198 TN--------------------QISQRLGRGKHTTRHVELLPLPQGGYIADTPGFSQLDF 237
Query: 249 LKVTKQSLAQTFPE 262
L++ + + F E
Sbjct: 238 LELGVEQIGWCFRE 251
>gi|220931840|ref|YP_002508748.1| ribosome small subunit-dependent GTPase A [Halothermothrix orenii H
168]
gi|219993150|gb|ACL69753.1| ribosome small subunit-dependent GTPase A [Halothermothrix orenii H
168]
Length = 282
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 126/237 (53%), Gaps = 31/237 (13%)
Query: 27 VVRALLK-KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
++R ++ K+KR+V GD V V MIE ++ R+ + P VANVD +L++ S
Sbjct: 22 IIRTRIRGKVKRKVYPGDFVKVND-------AMIEKLYPRTNLLFRPAVANVDQVLVIHS 74
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL-VDEEVLNTWKSRLHTWGYEPLFCSV 144
+ P L +FL+ E+ G+ + +NK++L V + L GY+ SV
Sbjct: 75 IQNPPFARKMLDKFLIMVEAIGVKPVIIINKIDLKVPDIELEKEMKDYKEEGYQVYLISV 134
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ K+GL+ L L ++ +V+ GPSGVGKSSLI AL P A
Sbjct: 135 KEKMGLNELYLTLEEKLSVLAGPSGVGKSSLIKAL--VPEAR------------------ 174
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
++GEVS K RG HTTRHV LLP++ GG++ADTPGF+ L + ++L FP
Sbjct: 175 --VKIGEVSQKLKRGVHTTRHVELLPINKGGWIADTPGFSALDLRGILSENLRFYFP 229
>gi|355670260|ref|ZP_09057115.1| ribosome small subunit-dependent GTPase A [Clostridium citroniae
WAL-17108]
gi|354816332|gb|EHF00920.1| ribosome small subunit-dependent GTPase A [Clostridium citroniae
WAL-17108]
Length = 292
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 117/237 (49%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V +D G I+ + RS ++ P ANVD L++F+
Sbjct: 25 CKAKGVFRNRKIKPLVGDNVEFSVLDQEAGEGNIDVILPRSNALVRPAAANVDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P L RFLV +P+ + NKV+L DE+++ T++ T GY F S
Sbjct: 85 LTHPAPNLNLLDRFLVMMGIQEVPVIICFNKVDLGDEDLVETYRKIYETAGYRVAFISTY 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ GL+ + + LR +TTV+ GPSGVGKSSL N ++ P A+
Sbjct: 145 EETGLEQVRKILRGKTTVLAGPSGVGKSSLTNCIQ--PCAA------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++S K RGKHTTRH L + Y+ DTPGF+ + L FPE
Sbjct: 184 -METGDISQKIERGKHTTRHCELFYVEEDTYMMDTPGFSSMFTPDLEAGDLKDYFPE 239
>gi|423441408|ref|ZP_17418314.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG4X2-1]
gi|402418069|gb|EJV50369.1| ribosome small subunit-dependent GTPase A [Bacillus cereus
BAG4X2-1]
Length = 293
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 126/241 (52%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E + + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + + L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIAILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELITV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|385264704|ref|ZP_10042791.1| ribosome-associated GTPase [Bacillus sp. 5B6]
gi|385149200|gb|EIF13137.1| ribosome-associated GTPase [Bacillus sp. 5B6]
Length = 296
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 125/242 (51%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELIRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L +E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLAADGESKEAILSYVKDYQGIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFENKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 187 ----ELKTNEISAHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEEELGSTFP 241
Query: 262 EV 263
E+
Sbjct: 242 EI 243
>gi|403386874|ref|ZP_10928931.1| GTPase RsgA [Clostridium sp. JC122]
Length = 288
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 122/242 (50%), Gaps = 27/242 (11%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G C R + ++GD V I D IE +++R+TE++ P VANV
Sbjct: 19 GNTYTCKARGKFRYNNLSPMIGDNV---EIKVEDNSVTIEKIYERTTELIRPVVANVTQA 75
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
++F+ P L L++FL+ E + + NK++L +E++ + K L + GYE L
Sbjct: 76 FVIFAFRHPDLNRDLLSKFLLLCEYNNLNAVVCFNKMDLKNEDI-DKVKEELESAGYEVL 134
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
+ ++ LGL+ L ++++D +V GPSGVGKS+++N +G
Sbjct: 135 YLEAKNNLGLEKLKEKIKDNISVFCGPSGVGKSTILNKF-------------------IG 175
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+ E GE+S K RGKHTTRH L+ G GYL DTPGF+ L + K+ L F
Sbjct: 176 REMME---TGEISGKLKRGKHTTRHSELIEF-GDGYLVDTPGFSSLELNFIPKEELQYCF 231
Query: 261 PE 262
E
Sbjct: 232 KE 233
>gi|423448366|ref|ZP_17425245.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG5O-1]
gi|401128960|gb|EJQ36643.1| ribosome small subunit-dependent GTPase A [Bacillus cereus BAG5O-1]
Length = 293
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 129/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRKTVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + + L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIAILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAV-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|160939806|ref|ZP_02087153.1| hypothetical protein CLOBOL_04697 [Clostridium bolteae ATCC
BAA-613]
gi|158437240|gb|EDP15005.1| hypothetical protein CLOBOL_04697 [Clostridium bolteae ATCC
BAA-613]
Length = 292
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 123/246 (50%), Gaps = 22/246 (8%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
ND C + + + K + LVGD V +D ++ G I+ + RS ++ P VAN
Sbjct: 16 NDGRNHVYQCKAKGVFRNRKIKPLVGDNVEFSVLDEEEKEGNIDVILPRSNVLIRPAVAN 75
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
VD L++F++ P+ L RFLV G+P+T+ NKV+L + +++ ++ G
Sbjct: 76 VDQALVVFAITHPEPNLNLLDRFLVMMGIQGVPVTICFNKVDLGEAGLVDKYRVIYERAG 135
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
YE F S GL+ + + LR +T+V+ GPSGVGKSSL N ++ P A+
Sbjct: 136 YEVHFVSTYEDTGLEEMKKFLRGKTSVLAGPSGVGKSSLTNCIQ--PQAA---------- 183
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
G++S K RG+HTTRH L + Y+ DTPGF+ + + L
Sbjct: 184 ----------METGDISRKIERGRHTTRHSELFYVEENTYMMDTPGFSSMFIDCLEPGEL 233
Query: 257 AQTFPE 262
FPE
Sbjct: 234 KDYFPE 239
>gi|326790880|ref|YP_004308701.1| ribosome small subunit-dependent GTPase A [Clostridium lentocellum
DSM 5427]
gi|326541644|gb|ADZ83503.1| ribosome small subunit-dependent GTPase A [Clostridium lentocellum
DSM 5427]
Length = 298
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 120/245 (48%), Gaps = 27/245 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVG---SIDWVDR--RGMIENVFQRSTEILDPPVANVDHL 80
C R + ++GD V++ + DR G IE + +R ++ P VANVD
Sbjct: 26 CKARGKFRNKNIIPVIGDNVLISLKKEENSNDRYLEGTIEEILERKNSLIRPAVANVDQA 85
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
+++FS+ P+L L RFL+ E I + LNK++ +E R GYE +
Sbjct: 86 MVVFSVSYPQLHIDLLDRFLLHIEKEDIVPYILLNKIDEGNENEYAELVERYTKIGYEVI 145
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S + K+ + L+ +L+++TTV GPSGVGKS+LIN + +
Sbjct: 146 CLSAKMKINTELLMPKLQNKTTVFAGPSGVGKSTLINTIEENLKLE-------------- 191
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
GEVS K RGKHTTRHV L+PLS GG++ DTPGF L + L F
Sbjct: 192 --------TGEVSDKIKRGKHTTRHVELIPLSEGGFVLDTPGFTSLQLEGMEADQLQYYF 243
Query: 261 PEVCA 265
PE A
Sbjct: 244 PEFDA 248
>gi|336113763|ref|YP_004568530.1| ribosome small subunit-dependent GTPase A [Bacillus coagulans 2-6]
gi|335367193|gb|AEH53144.1| ribosome small subunit-dependent GTPase A [Bacillus coagulans 2-6]
Length = 295
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 123/250 (49%), Gaps = 28/250 (11%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
N + G C R + +K K LVGD V + R G I ++ +R E++ PP+AN
Sbjct: 18 NREDGEIYQCRGRGVFRKKKIIPLVGDHVEFQKENG--REGYILDIGERKNELVRPPIAN 75
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
VD +L+FS +P L RFLV E I + + K +L+ E L +
Sbjct: 76 VDQAVLVFSAKEPDFHTLLLDRFLVPIEKNLIRPLILITKCDLLGAEEKERLLGTLEVYR 135
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY +F S ++ G D+LL L+ TV G SGVGK+S++N L
Sbjct: 136 QIGYPVIFSSAKAGEGTDALLSALKGNITVFCGQSGVGKTSILNRL-------------- 181
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
+P L D + E+ST GRGKHTTRHV LLP+ GGG +ADTPGF+ V
Sbjct: 182 --DPAL------DLKTNEISTHLGRGKHTTRHVELLPV-GGGLVADTPGFSSLDFTGVEL 232
Query: 254 QSLAQTFPEV 263
L FPE+
Sbjct: 233 SELGDYFPEI 242
>gi|402297534|ref|ZP_10817301.1| GTPase RsgA [Bacillus alcalophilus ATCC 27647]
gi|401727209|gb|EJT00402.1| GTPase RsgA [Bacillus alcalophilus ATCC 27647]
Length = 295
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 132/251 (52%), Gaps = 29/251 (11%)
Query: 19 KTGVELL-CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
+ G EL+ C R + + LVGD V + + D G I ++ +R E++ PP+ANV
Sbjct: 17 QAGDELIQCRGRGNFRNRGIKPLVGDTVEYEAENKTD--GYILDIAERKNELIRPPIANV 74
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT---WKSRLHT 134
D LL+FS +P P L RFLV ES I + ++K++L+ EE + +++
Sbjct: 75 DQALLVFSALEPDFSPALLDRFLVHIESNQIEPLIIISKMDLLTEEQMGNISQYQAVYQQ 134
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + + + ++ LL + ++ +V+ G SGVGKSSL+N L+
Sbjct: 135 LGYRVILTTTNEEDSIEKLLPFIEERISVVAGQSGVGKSSLLNVLK-------------- 180
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
P L D ++ST GRGKHTTRHV L+P+ G G +ADTPGF+ ++
Sbjct: 181 --PEL------DIETNQISTHLGRGKHTTRHVELIPV-GQGLIADTPGFSSLDFTQIEAG 231
Query: 255 SLAQTFPEVCA 265
L++ FPE+ A
Sbjct: 232 DLSEYFPEMLA 242
>gi|149182349|ref|ZP_01860827.1| ribosome-associated GTPase [Bacillus sp. SG-1]
gi|148849968|gb|EDL64140.1| ribosome-associated GTPase [Bacillus sp. SG-1]
Length = 294
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 130/241 (53%), Gaps = 27/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V S + ++ G I VF+R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGIFRKNKVTPLVGDHVSFQSEN--EKEGYILEVFERKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFC 142
+P L RFLV ES I + + K++LV + E++N + ++GYE +
Sbjct: 83 AVEPDFSTALLDRFLVLVESKEIEPLICVTKMDLVKDGEREMINDYVETYRSFGYEVVIT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +++ GL +L L + +V G SGVGKSSL+NALR P L
Sbjct: 143 SSKTEEGLAALKPHLAGKISVFAGQSGVGKSSLLNALR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D + ++ST GRGKHTTRHV L+ + G +ADTPGF+ ++ + L+ FPE
Sbjct: 184 ---DLKTSDISTHLGRGKHTTRHVELIEVDDEGLVADTPGFSSLEFSELELEELSSCFPE 240
Query: 263 V 263
+
Sbjct: 241 M 241
>gi|308069670|ref|YP_003871275.1| GTPase engC [Paenibacillus polymyxa E681]
gi|305858949|gb|ADM70737.1| Probable GTPase engC [Paenibacillus polymyxa E681]
Length = 305
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 123/242 (50%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK + LVGD+VV + + GM+E + +R+TE++ PPVAN +LLFS
Sbjct: 34 CRARGIFKKKEITPLVGDRVVYELTE--NGEGMVEEIRKRTTELIRPPVANTTLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-----EEVLNTWKSRLHTWGYEPL 140
+ +P L L +FLV E G+ + L K +L + ++ + + GYE L
Sbjct: 92 LREPDLNLPLLDKFLVHIEHAGLNTIICLTKRDLYEGSPSEDDTVLAVQEMYRKIGYEVL 151
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S + G L + L Q +V G SGVGKSS++NAL +A
Sbjct: 152 VTSARTGEGTAELKKLLAGQISVFSGQSGVGKSSMLNALEPGLTLETSA----------- 200
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+S K GRGKHTTRHV L+PL GG++ADTPGF+Q L++ L+ F
Sbjct: 201 -----------ISNKLGRGKHTTRHVELIPLDNGGFVADTPGFSQLDFLELGVDELSPCF 249
Query: 261 PE 262
E
Sbjct: 250 RE 251
>gi|383754582|ref|YP_005433485.1| putative ribosome biogenesis GTPase RsgA [Selenomonas ruminantium
subsp. lactilytica TAM6421]
gi|381366634|dbj|BAL83462.1| putative ribosome biogenesis GTPase RsgA [Selenomonas ruminantium
subsp. lactilytica TAM6421]
Length = 300
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 126/240 (52%), Gaps = 29/240 (12%)
Query: 26 CVVRALLKKIKRR--VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R KK ++ V+ GDKV++ + D G++E R + + P VANV ++L
Sbjct: 27 CKLRGKFKKTRKSQGVVTGDKVMISRLP--DGTGVVEEQLPRESLLRRPAVANVTQVVLT 84
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
F+ QP L P L RFLV AE +G+P + + +NK +L + ++ + + S GY+ L
Sbjct: 85 FAAAQPDLHPLLLNRFLVLAEWSGLPHIVICVNKADLYEGDMAD-FLSLYEQAGYKVLRV 143
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + K G++ L Q L +TTV GPSGVGKSSL+N + S +
Sbjct: 144 SAQEKQGMEELRQVLAGETTVFAGPSGVGKSSLLNVIDESLELA---------------- 187
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K RG+HTTR LLP GG++ DTPGF+ L ++ LA FPE
Sbjct: 188 ------TGHVSDKIKRGRHTTRVAELLPYE-GGFIVDTPGFSAMELGEIPLADLAHYFPE 240
>gi|126695356|ref|YP_001090242.1| GTPase [Prochlorococcus marinus str. MIT 9301]
gi|126542399|gb|ABO16641.1| Predicted GTPase [Prochlorococcus marinus str. MIT 9301]
Length = 305
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 131/246 (53%), Gaps = 31/246 (12%)
Query: 3 VIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENV 62
V ++ E S SD + LC VR + + + VGD+V++ +ID +R +I ++
Sbjct: 21 VDLKNQENSENSD-------KFLCKVRKSINFKDQLIYVGDEVIIENIDLKSKRAIITSL 73
Query: 63 FQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE 122
+R ++ P VAN+ ++ + FS+++P+L + RFL+ AES G+ ++L L K +L+ +
Sbjct: 74 MKRKNLLIRPSVANISNIYITFSVEEPELNLSQVNRFLISAESMGVEVSLVLTKCDLISD 133
Query: 123 EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRS 181
+ ++ + WGY+ + + E ++LL L+ + ++ +GPSGVGK++L+N +
Sbjct: 134 KRRSSLIDKFEKWGYQAITLNFERSDYFNNLLADLKQKKCSIFMGPSGVGKTTLLNMIIP 193
Query: 182 SPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241
S A VS K RGK+TTR++ L +S Y+ DTP
Sbjct: 194 GLQNSTAP----------------------VSNKIKRGKNTTRNIELFSISNQSYIVDTP 231
Query: 242 GFN-QP 246
GFN QP
Sbjct: 232 GFNMQP 237
>gi|384265160|ref|YP_005420867.1| ribosome-associated GTPase [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387898157|ref|YP_006328453.1| Putative ribosome biogenesis GTPase [Bacillus amyloliquefaciens Y2]
gi|380498513|emb|CCG49551.1| ribosome-associated GTPase [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387172267|gb|AFJ61728.1| Putative ribosome biogenesis GTPase [Bacillus amyloliquefaciens Y2]
Length = 296
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 124/242 (51%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELIRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L +E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLAADGESKEAILSYVKDYQGIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFENKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+S GRGKHTTRHV L+ S GG +ADTPGF+ + + L TFP
Sbjct: 187 ----ELKTNEISAHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEDELGSTFP 241
Query: 262 EV 263
E+
Sbjct: 242 EI 243
>gi|389843519|ref|YP_006345599.1| ribosome small subunit-dependent GTPase A [Mesotoga prima
MesG1.Ag.4.2]
gi|387858265|gb|AFK06356.1| ribosome small subunit-dependent GTPase A [Mesotoga prima
MesG1.Ag.4.2]
Length = 312
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 139/254 (54%), Gaps = 26/254 (10%)
Query: 11 SRTSDCND-KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEI 69
SR + D +TG L+C + + R +VGD+V D +G IE++ R TE+
Sbjct: 25 SRNMEVVDAETGGRLICTMPGRFRLQGIRPIVGDRVEYALSG--DGQGRIESILPRKTEL 82
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
L P ++N++ +LL+ S+ +P ++ RFLV AE +P+T+ +NK++L++ E L+ +
Sbjct: 83 LRPRISNIEQILLVLSLKEPAVQNLITDRFLVLAEYAKLPVTIVVNKIDLINNEELDRF- 141
Query: 130 SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
S ++ YE S ++++ LD L + L+ + +V+ G SGVGKSSL+N+L
Sbjct: 142 SDVYGEHYEICPVSSKNRINLDRLREVLKGKISVMAGMSGVGKSSLLNSLNP-------- 193
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
G K RV E+S RG+HTT +V LL GG +ADTPGF L
Sbjct: 194 ----------GLKL----RVSEISRGLERGRHTTSYVELLQFEFGGLIADTPGFANLELP 239
Query: 250 KVTKQSLAQTFPEV 263
+ ++L + FPE+
Sbjct: 240 VIAPENLDKCFPEI 253
>gi|403378879|ref|ZP_10920936.1| protein RsgA [Paenibacillus sp. JC66]
Length = 303
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 126/247 (51%), Gaps = 31/247 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK K LVGD+V + + G + + RS+E++ PPVANV+ +L+FS
Sbjct: 30 CRGRGIFKKKKITPLVGDRVEFALTE--NGEGTVTEILPRSSELIRPPVANVELAVLVFS 87
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL-------VDEEVLNTWKSRLHTWGYE 138
+ +P L L +FLV AE G+ L L+K +L V+ E + ++ GY
Sbjct: 88 IAEPSLNLQLLDKFLVHAEHAGLDALLVLSKHDLLLSGHVDVELEEVEAIRTMYEAIGYR 147
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S GLD + + L+ + +V G SGVGKSSL+NA+ I
Sbjct: 148 VVISSSSESRGLDEIREYLKGRISVFAGQSGVGKSSLLNAI------------------I 189
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
G E+S K GRGKHTTRHV L+ L G++ADTPGF+Q + + LA
Sbjct: 190 PGLSL----DTNEISQKLGRGKHTTRHVELIALEPSGWVADTPGFSQLDFSPIEAEDLAA 245
Query: 259 TFPEVCA 265
FPE+ +
Sbjct: 246 CFPEMAS 252
>gi|295696046|ref|YP_003589284.1| ribosome small subunit-dependent GTPase A [Kyrpidia tusciae DSM
2912]
gi|295411648|gb|ADG06140.1| ribosome small subunit-dependent GTPase A [Kyrpidia tusciae DSM
2912]
Length = 298
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/252 (37%), Positives = 132/252 (52%), Gaps = 26/252 (10%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D G + C R +LKK +VGD+V V + G++E+V R+ ++ PPVANV
Sbjct: 20 DLKGRTVRCRARGVLKKRGMHPVVGDEVRVHLSGLSE--GVVEDVLARTNILVRPPVANV 77
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWG 136
D +L+FS+ +P L L R LV E +P L +K +L+ D S G
Sbjct: 78 DLAVLVFSIREPDLNRHLLDRLLVSVELQNVPALLCWSKADLLQDRADFEREVSVYGRLG 137
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y L+ S + G+D+L RLR + +V+ G SGVGKSSLINAL
Sbjct: 138 YPTLYASSLTGEGIDALRTRLRGKVSVLAGQSGVGKSSLINAL----------------H 181
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQS 255
P L ++ VG+VS + GRG+HTTR V LL L Y+ADTPGF + K + +
Sbjct: 182 PGL------NRAVGDVSRRLGRGRHTTRQVELLRLEENTYVADTPGFGVLAFDKDLEPEK 235
Query: 256 LAQTFPEVCAVG 267
L++ FPE+ VG
Sbjct: 236 LSKGFPELVEVG 247
>gi|52080181|ref|YP_078972.1| ribosome-associated GTPase [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319646039|ref|ZP_08000269.1| YloQ protein [Bacillus sp. BT1B_CT2]
gi|404489069|ref|YP_006713175.1| GTPase RsgA [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423682123|ref|ZP_17656962.1| ribosome-associated GTPase [Bacillus licheniformis WX-02]
gi|52003392|gb|AAU23334.1| GTP binding protein EngC [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52348060|gb|AAU40694.1| GTPase CpgA [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317391789|gb|EFV72586.1| YloQ protein [Bacillus sp. BT1B_CT2]
gi|383438897|gb|EID46672.1| ribosome-associated GTPase [Bacillus licheniformis WX-02]
Length = 294
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 128/245 (52%), Gaps = 35/245 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G I + R E++ PP++NVD +L+FS
Sbjct: 25 CRGRGVFRKNKVTPLVGDDVVYQADN--DKEGYILEIKDRFNELVRPPISNVDQAVLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-------GYE 138
+P L RFLV E+ I + + K++LVD++ L K ++H + GY
Sbjct: 83 AKEPTFSTSLLDRFLVLVEAGDIRPIICITKMDLVDDDAL---KEQIHQYAEDYRNIGYS 139
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
S++S G++ ++ +D+ TV G SGVGKSSL+NA+ SP
Sbjct: 140 VYLTSMKSGRGIEDIIPHFQDKITVFAGQSGVGKSSLLNAI--SPDL------------- 184
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ + +S GRGKHTTRHV L+ ++ GG +ADTPGF+ + + L Q
Sbjct: 185 -------ELKTAGISAHLGRGKHTTRHVELIDIN-GGLVADTPGFSSLEFAGIEAEDLGQ 236
Query: 259 TFPEV 263
TF E+
Sbjct: 237 TFLEI 241
>gi|326389538|ref|ZP_08211105.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
ethanolicus JW 200]
gi|325994543|gb|EGD52968.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
ethanolicus JW 200]
Length = 293
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 122/237 (51%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + I+ D G I N+ R E+ PPVANVD +++F+
Sbjct: 27 CRARGKFRKDNITPLVGDIVEIQMIN--DSEGYILNILPRKNELTRPPVANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P+L L + +V AES I + +NKV+L ++ + GY+ + S
Sbjct: 85 IVRPELNRVLLDKMIVLAESNDIEPVICINKVDLKEDRKTFDLVTIYQKIGYKAVATSTV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+K G++ L L+D+ + GPSGVGKSSLIN+++S+
Sbjct: 145 TKEGIEELKSYLKDKVSFFAGPSGVGKSSLINSIQSNIKL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GEVS K RG+HTTR V LL L GGY+ DTPGF + L + K+ L F E
Sbjct: 185 --KTGEVSEKLLRGRHTTRSVELLSLDFGGYVLDTPGFTALT-LDIAKEDLRYYFKE 238
>gi|345017805|ref|YP_004820158.1| ribosome biogenesis GTPase RsgA [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033148|gb|AEM78874.1| ribosome biogenesis GTPase RsgA [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 293
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 122/237 (51%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + I+ D G I N+ R E+ PPVANVD +++F+
Sbjct: 27 CRARGKFRKDNITPLVGDIVEIQMIN--DSEGYILNILPRKNELTRPPVANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P+L L + +V AES I + +NKV+L ++ + GY+ + S
Sbjct: 85 IVRPELNRVLLDKMIVLAESNDIEPVICINKVDLKEDREAFDLVTIYQKIGYKAVATSTV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+K G++ L L+D+ + GPSGVGKSSLIN+++S+
Sbjct: 145 TKEGIEELKSYLKDKVSFFAGPSGVGKSSLINSIQSNIKL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GEVS K RG+HTTR V LL L GGY+ DTPGF + L + K+ L F E
Sbjct: 185 --KTGEVSEKLLRGRHTTRSVELLSLDFGGYVLDTPGFTALT-LDIAKEDLRYYFKE 238
>gi|308173541|ref|YP_003920246.1| GTPase [Bacillus amyloliquefaciens DSM 7]
gi|307606405|emb|CBI42776.1| GTPase involved in ribosome and sacculus morphogenesis [Bacillus
amyloliquefaciens DSM 7]
Length = 296
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 125/242 (51%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELVRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ I + + K++L + E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANAIHPIICITKMDLASDGESKEKILSYVKDYQAIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFANKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+ST GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 187 ----ELKTNEISTHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEEELGSTFP 241
Query: 262 EV 263
E+
Sbjct: 242 EI 243
>gi|167040385|ref|YP_001663370.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter sp.
X514]
gi|256752277|ref|ZP_05493140.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
ethanolicus CCSD1]
gi|300914469|ref|ZP_07131785.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter sp.
X561]
gi|307724295|ref|YP_003904046.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter sp.
X513]
gi|166854625|gb|ABY93034.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter sp.
X514]
gi|256748845|gb|EEU61886.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
ethanolicus CCSD1]
gi|300889404|gb|EFK84550.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter sp.
X561]
gi|307581356|gb|ADN54755.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter sp.
X513]
Length = 293
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 122/237 (51%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + I+ D G I N+ R E++ PP+ANVD +++F+
Sbjct: 27 CRARGKFRKDNVTPLVGDIVEIQMIN--DSEGYILNILPRKNELIRPPIANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P++ L + +V AES I + +NKV+L ++ + GY+ + SV
Sbjct: 85 IAKPEINRVLLDKMIVLAESNDIEPIICINKVDLKEDREAFDLVTIYQKIGYKAVTTSVV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+K G+ L L+D+ + GPSGVGKSSLIN+++S+
Sbjct: 145 TKDGIKELKSYLKDKVSFFAGPSGVGKSSLINSIQSNIKL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GEVS K RG+HTTR V LL L GGY+ DTPGF + L + Q L F E
Sbjct: 185 --KTGEVSEKLLRGRHTTRSVELLSLDFGGYVLDTPGFTALT-LDIDNQDLRYYFRE 238
>gi|300854449|ref|YP_003779433.1| GTPase [Clostridium ljungdahlii DSM 13528]
gi|300434564|gb|ADK14331.1| predicted GTPase [Clostridium ljungdahlii DSM 13528]
Length = 287
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 121/237 (51%), Gaps = 26/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +VGDKV I +G+I ++ R T++ P VANV L++F+
Sbjct: 24 CKARGKFRHNSLSPMVGDKV---DIALEKEQGVINRIYSRKTKLKRPAVANVTQALVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
++P++ L RFL+ E + + + NK++L +E+ + + + GY+ +F + +
Sbjct: 81 FNRPEINEDLLNRFLISCELNNLKIVVCFNKLDLAEEKEKSDIANTMKKIGYDVIFLTAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G+D + ++L+ TV+ GPSGVGKS+++NA+ E
Sbjct: 141 ENCGIDKIKEKLKGNITVLCGPSGVGKSTILNAISGK----------------------E 178
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S K RGKHTTRH L+ L G + DTPGF+ + ++++ L FPE
Sbjct: 179 IMETGEISQKLKRGKHTTRHSELIELE-EGLIVDTPGFSSLDISDISEEKLQYCFPE 234
>gi|78778404|ref|YP_396516.1| GTPase EngC [Prochlorococcus marinus str. MIT 9312]
gi|78711903|gb|ABB49080.1| GTPase EngC [Prochlorococcus marinus str. MIT 9312]
Length = 305
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 134/243 (55%), Gaps = 26/243 (10%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+ LC V+ + + + VGD+V++ +ID +R +I ++ +R ++ P VAN+ ++ +
Sbjct: 34 KFLCKVKKSINFKDQFIYVGDEVIIDNIDLRSKRALITSLKKRKNLLIRPSVANISNIYI 93
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+FS+ +P+L + RFL+ AES G+ ++L L K +L+ E+ + + WGY+ +
Sbjct: 94 IFSVKEPELNLSQVNRFLISAESMGVEVSLVLTKCDLISEKKRSFLLDKFGKWGYQTITL 153
Query: 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
+++ L +LL L + + ++ +GPSGVGK++L+N + + N P
Sbjct: 154 NLQKPNYLKNLLVELKKKKCSIFMGPSGVGKTTLLNMI--------IPGLQNITAP---- 201
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN-QPSLLKVTKQSLAQTF 260
VS K RGK+TTR+V L P+S Y+ DTPGFN QP LKV + L +
Sbjct: 202 ----------VSNKIKRGKNTTRNVELFPISSQSYIVDTPGFNMQP--LKVDIRLLPNLY 249
Query: 261 PEV 263
E+
Sbjct: 250 SEI 252
>gi|331091580|ref|ZP_08340416.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
2_1_46FAA]
gi|330403607|gb|EGG83163.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
2_1_46FAA]
Length = 292
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K K ++LVGD V + ++ + G + + R E++ P V+N+D L++F+
Sbjct: 25 CKAKGAFRKEKVKLLVGDNVEIDILNEEKKLGNVVKLLPRENELIRPAVSNIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +PK L RFLV ES IP+ L NK ++ +E+ + + + GY +F S +
Sbjct: 85 ITKPKPHFNLLDRFLVMMESKKIPIVLCFNKKDIAEEKEIRELEEIYSSCGYHIIFTSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ + + + L+ +TT + GPSGVGKSSLIN +S
Sbjct: 145 EEENIKLVKEVLKGKTTAVAGPSGVGKSSLINLFQSEIQ--------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+P+ Y+ DTPGF+ + K+ L FPE
Sbjct: 184 -METGCISEKIERGKHTTRHSELIPIDDNSYIMDTPGFSSLYVNDFEKEELKYYFPE 239
>gi|150016036|ref|YP_001308290.1| ribosome-associated GTPase [Clostridium beijerinckii NCIMB 8052]
gi|254766358|sp|A6LSK4.1|RSGA_CLOB8 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|149902501|gb|ABR33334.1| ribosome small subunit-dependent GTPase A [Clostridium beijerinckii
NCIMB 8052]
Length = 290
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 123/238 (51%), Gaps = 27/238 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD V +I +G+IE + +R +E++ P VANV ++F+
Sbjct: 24 CKARGKFRHKDIKPMVGDDV---TIKMEHGKGVIEEIHERKSELVRPTVANVSLAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FL+ E I + + LNK++LV EE K R++ GYE LF + +
Sbjct: 81 VKNPDINFDLLNKFLILCEYNNIEVIVCLNKIDLVSEEEREEIKKRINVIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G++ L +++R TV GPSG GKS+LIN L + H
Sbjct: 141 KGIGIERLEEKIRGNITVFCGPSGAGKSTLINKLSNKEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT-KQSLAQTFPE 262
G VS K GRGKHTTRH L+ ++ GY+ DTPGF+ + + K SL FPE
Sbjct: 180 -METGNVSVKLGRGKHTTRHSELIEVA-DGYIVDTPGFSTLEIKDLMDKNSLKYCFPE 235
>gi|374602033|ref|ZP_09675028.1| ribosome small subunit-dependent GTPase A [Paenibacillus
dendritiformis C454]
gi|374392223|gb|EHQ63550.1| ribosome small subunit-dependent GTPase A [Paenibacillus
dendritiformis C454]
Length = 305
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 127/254 (50%), Gaps = 34/254 (13%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ G + C R + KK LVGD+VV + + G+++ + R +E++ PP+ANV
Sbjct: 22 RGGKTVQCRARGIFKKKGVSPLVGDRVVYSFTE--NGEGVVDEIGPRESELIRPPIANVS 79
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTW 135
L+FS+ +P+L L +FLV E + + L K +L+D EE + R+
Sbjct: 80 LAALVFSVTEPELNMQLLDKFLVHIEHAEVEAVILLTKWDLLDRLPEEESARLRRRMEEL 139
Query: 136 -------GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
GYE + S + G + RL DQ +V G SGVGKSSL+NA+ P S
Sbjct: 140 IALYRGIGYEVIATSAKGGFGYQGVADRLADQISVFAGQSGVGKSSLLNAM--LPGVSLE 197
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
+ ++S + GRGKHTTRHV LLPL GGY+ADTPGF+Q
Sbjct: 198 TN--------------------QISQRLGRGKHTTRHVELLPLPQGGYIADTPGFSQLDF 237
Query: 249 LKVTKQSLAQTFPE 262
L++ L F E
Sbjct: 238 LELGVDQLGWCFRE 251
>gi|167768551|ref|ZP_02440604.1| hypothetical protein CLOSS21_03110 [Clostridium sp. SS2/1]
gi|317498694|ref|ZP_07956986.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 5_1_63FAA]
gi|167710075|gb|EDS20654.1| ribosome small subunit-dependent GTPase A [Clostridium sp. SS2/1]
gi|291560512|emb|CBL39312.1| ribosome small subunit-dependent GTPase A [butyrate-producing
bacterium SSC/2]
gi|316894036|gb|EFV16226.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 291
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 120/237 (50%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V + +D ++ G I +++R E++ P V+NVD L++F+
Sbjct: 24 CKAKGIFRNKKMKPLVGDNVEIDILDEAEQEGNITKIYERHNELIRPAVSNVDQALIIFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
PK L RFL+ E +P+ + NKV+L E+ L + G+ F SV+
Sbjct: 84 AKNPKPNYNLLDRFLMMMEKQDVPVIVCFNKVDLAKEKELKLLEKVYENCGHIVRFISVK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D + + + +TTV+ GPSGVGKSSL+N L+ P A
Sbjct: 144 EEEGIDEIRELIHGKTTVLAGPSGVGKSSLMNLLQ--PEAQ------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GEVS K RG+HTTRH L+ + Y+ DTPGF+ + + + F E
Sbjct: 183 -METGEVSEKIKRGRHTTRHSELIRIEKDTYVLDTPGFSSLFIHMFEEDEIKDYFQE 238
>gi|429762817|ref|ZP_19295190.1| ribosome small subunit-dependent GTPase A [Anaerostipes hadrus DSM
3319]
gi|429180678|gb|EKY21887.1| ribosome small subunit-dependent GTPase A [Anaerostipes hadrus DSM
3319]
Length = 291
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 120/237 (50%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V + +D ++ G I +++R E++ P V+NVD L++F+
Sbjct: 24 CKAKGIFRNKKMKPLVGDNVEIDILDETEQEGNITKIYERHNELIRPAVSNVDQALIIFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
PK L RFL+ E +P+ + NKV+L E+ L + G+ F SV+
Sbjct: 84 AKNPKPNYNLLDRFLMMMEKQDVPVIVCFNKVDLAKEKELKLLEKVYENCGHIVRFISVK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D + + + +TTV+ GPSGVGKSSL+N L+ P A
Sbjct: 144 EEEGIDEIRELIHGKTTVLAGPSGVGKSSLMNLLQ--PEAQ------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GEVS K RG+HTTRH L+ + Y+ DTPGF+ + + + F E
Sbjct: 183 -METGEVSEKIKRGRHTTRHSELIRIEKDTYVLDTPGFSSLFIHMFEEDEIKDYFQE 238
>gi|182420434|ref|ZP_02951653.1| ribosome small subunit-dependent GTPase A [Clostridium butyricum
5521]
gi|237667587|ref|ZP_04527571.1| ribosome small subunit-dependent GTPase A [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182375720|gb|EDT73320.1| ribosome small subunit-dependent GTPase A [Clostridium butyricum
5521]
gi|237655935|gb|EEP53491.1| ribosome small subunit-dependent GTPase A [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 290
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 124/238 (52%), Gaps = 27/238 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD V +I + +G+IE + +R++E++ P VANV ++F+
Sbjct: 24 CKARGKFRHKDIKPMVGDNV---TIQIENGKGVIEEIHKRTSELVRPTVANVSLAFIVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FLV E I + + LNK++LV EE K R++ GYE LF + +
Sbjct: 81 VKNPDINFDLLNKFLVLCEYNNIEVIVCLNKIDLVSEEEREEIKKRINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G++ L +++ TV GPSG GKS+LIN L H
Sbjct: 141 QGIGIERLKEKMNGNVTVFCGPSGAGKSTLINQLADKEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT-KQSLAQTFPE 262
+ G VS K GRGKHTTRH L+ ++ GY+ DTPGF+ + + K SL FPE
Sbjct: 180 -MQTGNVSEKLGRGKHTTRHSELIEVA-QGYIVDTPGFSTLEIKDLMDKNSLKYCFPE 235
>gi|310642734|ref|YP_003947492.1| ribosome small subunit-dependent GTPase a [Paenibacillus polymyxa
SC2]
gi|386041815|ref|YP_005960769.1| putative GTPase [Paenibacillus polymyxa M1]
gi|309247684|gb|ADO57251.1| Ribosome small subunit-dependent GTPase A [Paenibacillus polymyxa
SC2]
gi|343097853|emb|CCC86062.1| putative GTPase [Paenibacillus polymyxa M1]
Length = 305
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 123/243 (50%), Gaps = 31/243 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R L KK + LVGD+VV + + GM++ + +R+TE++ PPVAN +LLFS
Sbjct: 34 CRARGLFKKKEITPLVGDRVVYELTE--NGEGMVKEIRKRTTELIRPPVANTTLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV------DEEVLNTWKSRLHTWGYEP 139
+ +P L L +FLV E G+ + L K +L D+ VL + GYE
Sbjct: 92 LREPDLNLPLLDKFLVHIEHAGLDTIICLTKRDLYEGSPSEDDTVLKV-QEMYRKIGYEV 150
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
L S + G L + L Q +V G SGVGKSS++NAL +A
Sbjct: 151 LVTSTRTGEGTAELKKLLAGQISVFSGQSGVGKSSMLNALEPGLTLETSA---------- 200
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+S K GRG+HTTRHV L+PL GG++ADTPGF+Q L++ L+
Sbjct: 201 ------------ISNKLGRGRHTTRHVELIPLDNGGFVADTPGFSQLDFLELGVDELSPC 248
Query: 260 FPE 262
F E
Sbjct: 249 FRE 251
>gi|238926263|ref|ZP_04658023.1| ribosome-associated GTP-binding protein [Selenomonas flueggei ATCC
43531]
gi|238885943|gb|EEQ49581.1| ribosome-associated GTP-binding protein [Selenomonas flueggei ATCC
43531]
Length = 288
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 123/242 (50%), Gaps = 27/242 (11%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
E+LC +R + + +L GD V + I + G+IE R++ +L P VAN+ ++
Sbjct: 22 AEILCKLRGKSTRGRDALLPGDIVRLERISSTE--GVIEGTEPRTSLLLRPRVANLTQIV 79
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
+ + P P ++RFLV AE +GI + L +NK++L + + + GY L
Sbjct: 80 VTVAAAAPNPHPLVVSRFLVLAEHSGIDHIVLCINKIDLAGGN-MTEFCTPYEAAGYPVL 138
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S + GL +L +RL + TV GPSG GKSSL+NA+ SS +
Sbjct: 139 LVSAVNGTGLSALQERLAGEITVFAGPSGAGKSSLLNAMDSSLALA-------------- 184
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
VG VS K GRG+HTTR LLP + GGY+ DTPGF Q L + LA F
Sbjct: 185 --------VGAVSEKIGRGRHTTRRAELLPFA-GGYVVDTPGFTQQELTGIAADELADCF 235
Query: 261 PE 262
PE
Sbjct: 236 PE 237
>gi|291522858|emb|CBK81151.1| ribosome small subunit-dependent GTPase A [Coprococcus catus GD/7]
Length = 292
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 117/240 (48%), Gaps = 22/240 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V + S+D D +G I + R ++ P ANVD +++F+
Sbjct: 25 CKAKGIFRNRKIKPLVGDDVFLDSLDENDMKGNITEILPRRNALIRPASANVDQAMIIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
QP L RFL+ E +P + NK EL+ E L+ S G + L SV+
Sbjct: 85 AAQPAPNLGLLDRFLLMMERQELPTIICFNKQELISGEELDRLCSIYRGSGCKVLTVSVK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ GLD + + L +TTV+ GPSGVGKSS+ NA+ P A A
Sbjct: 145 QQEGLDQIREILDGRTTVMAGPSGVGKSSMTNAM--YPDAEMA----------------- 185
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA 265
G VS K RG+HTTRH L + YL DTPGF+ L K+ L +PE A
Sbjct: 186 ---TGAVSEKIKRGRHTTRHSELFSIGNDTYLMDTPGFSTLYLEGWEKEDLKYYYPEFEA 242
>gi|374324696|ref|YP_005077825.1| GTPase engC [Paenibacillus terrae HPL-003]
gi|357203705|gb|AET61602.1| GTPase engC [Paenibacillus terrae HPL-003]
Length = 305
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 122/242 (50%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK + LVGD+VV + + GM+ + +R+TE++ PPVAN +LLFS
Sbjct: 34 CRARGIFKKKEITPLVGDRVVYELTE--NGEGMVNEIRKRTTELIRPPVANTTLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-----EEVLNTWKSRLHTWGYEPL 140
+ +P L L +FLV E G+ + L K +L + +E + + GYE L
Sbjct: 92 LREPDLNLPLLDKFLVHIEHAGLDTIICLTKRDLYEGSPSEDETVLAVQEMYRKIGYEVL 151
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S + G L + L Q +V G SGVGKSS++NAL +A
Sbjct: 152 VTSARTGEGTAELKKLLAGQISVFSGQSGVGKSSMLNALEPGLTLETSA----------- 200
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+S K GRG+HTTRHV L+PL GG++ADTPGF+Q L++ L+ F
Sbjct: 201 -----------ISNKLGRGRHTTRHVELIPLDNGGFVADTPGFSQLDFLELGVDELSPCF 249
Query: 261 PE 262
E
Sbjct: 250 RE 251
>gi|347750542|ref|YP_004858107.1| ribosome small subunit-dependent GTPase A [Bacillus coagulans 36D1]
gi|347583060|gb|AEO99326.1| ribosome small subunit-dependent GTPase A [Bacillus coagulans 36D1]
Length = 295
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 126/251 (50%), Gaps = 30/251 (11%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
N + G C R + +K K LVGD V + R G I ++ +R E++ PP+AN
Sbjct: 18 NREDGEIYQCRGRGVFRKRKITPLVGDHVEFQKENG--REGYILDIGERKNELVRPPIAN 75
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRL 132
VD +L+FS +P L RFLV E I + + K +L+ E++L T +
Sbjct: 76 VDQAVLVFSAKEPAFSTLLLDRFLVPIEKNLIRPLILITKCDLLGADEKEKLLETL-AVY 134
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY + S ++ G D+LL L+ + TV G SGVGK+S++N L
Sbjct: 135 RQIGYPVMLSSAKAGEGADALLSALKGKITVFCGQSGVGKTSILNRL------------- 181
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+P LG K E+ST GRGKHTTRHV LLP+ GGG +ADTPGF+ V
Sbjct: 182 ---DPALGLK------TNEISTHLGRGKHTTRHVELLPV-GGGLVADTPGFSSLDFNSVE 231
Query: 253 KQSLAQTFPEV 263
L FPE+
Sbjct: 232 LTELGDNFPEI 242
>gi|167037724|ref|YP_001665302.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116139|ref|YP_004186298.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166856558|gb|ABY94966.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929230|gb|ADV79915.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 293
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 122/237 (51%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + I+ D G I N+ R E++ PP+ANVD +++F+
Sbjct: 27 CRARGKFRKDNVTPLVGDIVEIQMIN--DSEGYILNILPRKNELIRPPIANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P++ L + +V AES I + +NKV+L ++ + GY+ + SV
Sbjct: 85 IAKPEINRVLLDKMIVLAESNDIEPIICINKVDLKEDREAFDLVTIYQKIGYKAVTTSVV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+K G+ L L+D+ + GPSGVGKSSLIN+++S+
Sbjct: 145 TKDGIKELKSYLKDKVSFFAGPSGVGKSSLINSIQSNIKL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GEVS K RG+HTTR V LL L GGY+ DTPGF + L + Q L F E
Sbjct: 185 --KTGEVSEKLLRGRHTTRSVELLSLDFGGYVLDTPGFTALT-LDIDIQDLRYYFRE 238
>gi|387927080|ref|ZP_10129759.1| GTPase RsgA [Bacillus methanolicus PB1]
gi|387589224|gb|EIJ81544.1| GTPase RsgA [Bacillus methanolicus PB1]
Length = 293
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 124/240 (51%), Gaps = 28/240 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K + LVGD VV + + D G I + +R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNRITPLVGDNVVYQAENETD--GYILEIKERKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFC 142
+P L RFLV E I + + K++LVD EE ++ + GY+ L
Sbjct: 83 AVEPDFSTALLDRFLVLVEYNHIKPIICITKMDLVDEEKEEKIHKYAFEYRKAGYDVLLI 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +G+ L+ L + +V+ G SGVGKSSL+NALR P L
Sbjct: 143 SSKKSIGVGDLIPYLEGKISVVAGQSGVGKSSLLNALR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + +S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FP+
Sbjct: 184 ---ELKTNHISSHLGRGKHTTRHVELIEI-GNGLVADTPGFSSLEFIDLEPEDLNSCFPD 239
>gi|392940851|ref|ZP_10306495.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
siderophilus SR4]
gi|392292601|gb|EIW01045.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacter
siderophilus SR4]
Length = 293
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 121/237 (51%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + I+ D G I N+ R E+ PPVANVD +++F+
Sbjct: 27 CRARGKFRKDNITPLVGDIVEIQMIN--DSEGYILNILPRKNELTRPPVANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P+L L + +V AES I + +NKV+L ++ + GY+ + S
Sbjct: 85 IVRPELNRVLLDKMIVLAESNDIEPVICINKVDLKEDRKTFDLVTIYQKIGYKAVATSTV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+K G++ L L+D+ + GPSGVGKSSLIN+++S+
Sbjct: 145 TKEGIEELKSYLKDKVSFFAGPSGVGKSSLINSIQSNIKL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GEVS K RG+HTTR V LL L GGY+ DTPGF + L + Q L F E
Sbjct: 185 --KTGEVSEKLLRGRHTTRSVELLSLDFGGYVLDTPGFTALT-LDIDNQDLRYYFRE 238
>gi|359411385|ref|ZP_09203850.1| ribosome biogenesis GTPase RsgA [Clostridium sp. DL-VIII]
gi|357170269|gb|EHI98443.1| ribosome biogenesis GTPase RsgA [Clostridium sp. DL-VIII]
Length = 290
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 125/238 (52%), Gaps = 27/238 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD V +I + G+IE + +R +E++ P VANV ++F+
Sbjct: 24 CKARGKFRHNAIKPMVGDDV---TIKIENGEGVIEKIHERKSELIRPTVANVSLAFIVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FL+ E I + + LNK++LV EE K R++ GYE L+ + +
Sbjct: 81 IKNPDINFELLNKFLILCEHNNIEVIVCLNKIDLVSEEEREEIKKRINDIGYEVLYINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G++ L ++++ TV+ GPSG GKS+LIN L + H
Sbjct: 141 KGIGIERLEEKIKGNITVLCGPSGAGKSTLINKLSNKEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT-KQSLAQTFPE 262
G VS K GRGKHTTRH L+ ++ GY+ DTPGF+ + ++ K SL FPE
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIEVA-DGYIVDTPGFSTLEIKELMDKDSLKYCFPE 235
>gi|291549486|emb|CBL25748.1| ribosome small subunit-dependent GTPase A [Ruminococcus torques
L2-14]
Length = 299
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 112/237 (47%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K + LVGD V+ +D + G I + R E++ P VAN+D L++F+
Sbjct: 32 CKAKGAFRKDGIKPLVGDDAVIEVLDEKEMTGNIIEILPRKNELIRPAVANIDQALVVFA 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +PK L RFLV E IP+ L NK ++ + K GY +F S +
Sbjct: 92 VTKPKPHYNLLDRFLVMMERKEIPVVLCFNKTDIASHPEIAELKEVYTGCGYPVIFTSAK 151
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ + L L+ +TT I GPSGVGKSSLIN L+S
Sbjct: 152 EEENISELKSLLKGKTTSIAGPSGVGKSSLINLLQSEV---------------------- 189
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + Y+ DTPGF+ + K+ L FPE
Sbjct: 190 KMETGSISKKIDRGKHTTRHSELIVIGEDSYIMDTPGFSSLYVNDFEKEDLKYYFPE 246
>gi|78042965|ref|YP_360309.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
gi|123576136|sp|Q3AC25.1|RSGA_CARHZ RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|77995080|gb|ABB13979.1| GTP-binding protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 290
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 128/243 (52%), Gaps = 34/243 (13%)
Query: 25 LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLF 84
+C R KK ++L GD+V++ + + G+IE++ R E++ PP+ANVD +LL+F
Sbjct: 23 MCKARGKFKKDNIKILTGDRVIIREL-VPNSEGVIESLLPRKNELIRPPIANVDQVLLVF 81
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLF 141
+ P + R LV A + + + L NK +LV+ E + +K L P
Sbjct: 82 AFADPFPSTELIDRLLVMAYALRLEVVLVFNKFDLVNPESQKLFEYYKKIL------PKV 135
Query: 142 CSVESK--LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
++ ++ G+D L L + +V+ GPSGVGKS+LIN L +
Sbjct: 136 VAITARGDTGIDELTDYLNQKISVLAGPSGVGKSTLINRL------------------VP 177
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G+K GEVS K RG+HTTRHV L+ L GG++ADTPGF+ +L ++ K L
Sbjct: 178 GAKL----ATGEVSPKIKRGRHTTRHVELIKLPFGGFIADTPGFSNLTLPEMDKLELQSY 233
Query: 260 FPE 262
FPE
Sbjct: 234 FPE 236
>gi|440780887|ref|ZP_20959358.1| GTPase RsgA [Clostridium pasteurianum DSM 525]
gi|440221475|gb|ELP60680.1| GTPase RsgA [Clostridium pasteurianum DSM 525]
Length = 289
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 124/237 (52%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + LVGD V++ +D D +G+I+ + R+++++ P +ANV ++F+
Sbjct: 24 CKARGKFRHKELSPLVGDNVII-DLDE-DNKGVIKEICDRTSKLIRPSIANVTQAFIIFA 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P L +FLV E + + NK++L +E ++ S + + GYE ++ + +
Sbjct: 82 VRNPDFNMDLLNKFLVLCEVNKLKAVVCFNKIDLATKEEVDNTVSLVKSIGYETIYLNAK 141
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D + L + TV GPSGVGKS+++N+ I+G E
Sbjct: 142 TGYGIDKIKAHLEENITVFCGPSGVGKSTILNS-------------------IVGHSAME 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++S + RGKHTTRH LL + GGY+AD+PGF+ + + K L FPE
Sbjct: 183 ---TGDISKRLNRGKHTTRHCELLEID-GGYVADSPGFSSLDISFIKKDQLQGCFPE 235
>gi|150021381|ref|YP_001306735.1| ribosome small subunit-dependent GTPase A [Thermosipho
melanesiensis BI429]
gi|149793902|gb|ABR31350.1| ribosome small subunit-dependent GTPase A [Thermosipho
melanesiensis BI429]
Length = 288
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 131/246 (53%), Gaps = 25/246 (10%)
Query: 25 LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLF 84
+C +R K+ R +VGD V I V + G+IEN+ R E+ P +AN+D ++++
Sbjct: 27 MCKLRGKFKEQGIRPIVGDCVEFRPI--VGKEGVIENILNRKNELKRPKIANIDQVVVVT 84
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV 144
S+ +P + L R+LV E+ +P + LNK +L+ + ++ + +++ Y S
Sbjct: 85 SLKKPNVPLKILDRYLVLVENAKLPAVIVLNKCDLLSRKEIDNFLD-IYSKLYSVYVVSA 143
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
++K+G+D L+ +++ + + G SGVGKSS++NA+ +P S
Sbjct: 144 KNKIGIDKLIDVFKNKVSTMAGMSGVGKSSILNAI--NPGLS------------------ 183
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
RVGE+S K RGKHTT + L GG++ADTPGF + + ++ L + FPE
Sbjct: 184 --LRVGEISEKLDRGKHTTTVIEFLKFDFGGWVADTPGFANLDISDIERERLKEYFPEFG 241
Query: 265 AVGLLY 270
+ LY
Sbjct: 242 SYFCLY 247
>gi|167630207|ref|YP_001680706.1| GTPase [Heliobacterium modesticaldum Ice1]
gi|167592947|gb|ABZ84695.1| GTPase, putative [Heliobacterium modesticaldum Ice1]
Length = 303
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 119/232 (51%), Gaps = 24/232 (10%)
Query: 32 LKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKL 91
LK R L GD+V + ++ +G+IE V R E+L PPVANVD +LL+F++ P
Sbjct: 37 LKGDDRVFLPGDQVRICVMEG--DKGVIEGVLPRRNELLRPPVANVDQVLLVFALAAPDP 94
Query: 92 EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLD 151
+ + R LV A GI L NK ++ E + ++ S L+
Sbjct: 95 DFVLVDRLLVLAAHAGIQPVLVWNKADIASPERVAQVQALYRDISIAQFVLSARQGENLE 154
Query: 152 SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211
L L D+ +V+ GPSG GKS+L+NAL +P S + GE
Sbjct: 155 GLKGLLEDRISVVAGPSGAGKSTLLNAL--APGLS--------------------LKTGE 192
Query: 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
VS K GRG+HTTRHV L+PL+ G +ADTPGF+ L ++ Q L + FPE+
Sbjct: 193 VSAKIGRGRHTTRHVELIPLASGALVADTPGFSTLYLPDISPQDLPELFPEM 244
>gi|251797734|ref|YP_003012465.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp. JDR-2]
gi|247545360|gb|ACT02379.1| ribosome small subunit-dependent GTPase A [Paenibacillus sp. JDR-2]
Length = 308
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 127/251 (50%), Gaps = 33/251 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G + C R + KK LVGD VV + + G +E + RS+E++ PPVANVD
Sbjct: 30 GQTVQCRARGVFKKRGLTPLVGDDVVYSLTE--NGEGTVEELLPRSSELIRPPVANVDLA 87
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK-------SRLH 133
+L+FS+ +P L L +FLV E +GI L L+K +L +R++
Sbjct: 88 ILVFSVTEPTLNLQLLDKFLVHIEHSGIEAVLCLSKQDLEQNGEETEEAIAAAEAVNRIY 147
Query: 134 TW-GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
T GYE S +G++ L RL+ V G SGVGKSSL+NAL
Sbjct: 148 TAIGYEVYGTSSRQGVGVEELHDRLKGHVAVFAGQSGVGKSSLLNALV------------ 195
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
P L + E+S + GRGKHTTRHV L+ + GGGY+ADTPGF+Q ++
Sbjct: 196 ----PGL------ELETNEISNRLGRGKHTTRHVELVEI-GGGYVADTPGFSQLDFTELG 244
Query: 253 KQSLAQTFPEV 263
+ L F E+
Sbjct: 245 IEDLGYCFREM 255
>gi|363895556|ref|ZP_09322551.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
ACC19a]
gi|361957308|gb|EHL10618.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
ACC19a]
Length = 305
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 118/234 (50%), Gaps = 22/234 (9%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R KK K+ ++VGD V + +D +++ ++E V+ R ++ P +AN+ ++L+FS+
Sbjct: 37 RGSFKKDKQNIIVGDYVDISILDEENKKAVVEKVYNRKNMLIRPSIANITKMILVFSVKN 96
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
PKL F + FLV AE I + + +K++L +E+ GY+ + S + +
Sbjct: 97 PKLNTFLIDNFLVIAEKEQIDVVICFSKIDLDEEKNYKNIIKIYQDIGYQTVEISSNNNI 156
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
G++ + ++ TVI GPSG GKSSLIN + S F Q
Sbjct: 157 GIEDIKLKISGNITVIAGPSGAGKSSLINCI---------------------SDRFS-QT 194
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++S K +GK+TT + +LL + Y+ADTPGF + + K L F E
Sbjct: 195 TSDISMKLQKGKNTTTYATLLEFAKNSYIADTPGFTSLKITDIDKYELKDYFLE 248
>gi|295706326|ref|YP_003599401.1| ribosome small subunit-dependent GTPase A [Bacillus megaterium DSM
319]
gi|294803985|gb|ADF41051.1| ribosome small subunit-dependent GTPase A [Bacillus megaterium DSM
319]
Length = 293
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 124/241 (51%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + ++ G I + +R E++ PP++NVD LL+FS
Sbjct: 25 CRGRGVFRKKKVTPLVGDNVVFQAENKLE--GYILEIKERKNELVRPPISNVDQALLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC 142
+P L RFLV ES I + ++KV+L+ ++ + + GYE +
Sbjct: 83 AIEPDFSTMLLDRFLVLVESNHIEPIICISKVDLLSQQQKQEIEQYAEEYRKIGYEVILT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++ G++ + D+ TVI G SGVGKSSL+N L+ P L
Sbjct: 143 STVTEKGMEQIQPLFEDRVTVIAGQSGVGKSSLLNTLK----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S GRGKHTTRHV L+ G G +ADTPGF+ L + + L FPE
Sbjct: 184 ---ELKTNDISMSLGRGKHTTRHVELISF-GEGLVADTPGFSSLEFLTLEVEELTHCFPE 239
Query: 263 V 263
+
Sbjct: 240 M 240
>gi|319649616|ref|ZP_08003772.1| ribosome-associated GTPase [Bacillus sp. 2_A_57_CT2]
gi|317398778|gb|EFV79460.1| ribosome-associated GTPase [Bacillus sp. 2_A_57_CT2]
Length = 293
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 128/248 (51%), Gaps = 29/248 (11%)
Query: 20 TGVELL-CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+G E++ C R + +K K LVGD+VV + + G I V +R E++ PP+ANVD
Sbjct: 18 SGDEIIQCRGRGVFRKNKVNPLVGDEVVFQAESITE--GYILEVKERKNELIRPPIANVD 75
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTW 135
+L+FS +P L RFLV E I + + K++L DE + + + S
Sbjct: 76 QAILVFSAVEPGFSTSLLDRFLVLVEFNRIKPIICITKIDLTDEHGYKEIQQYASDYRKA 135
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
GY+ L S E++ G+ L+ L + +V G SGVGKSSL+N LR
Sbjct: 136 GYDVLLTSSETEEGVKDLMPYLEGEISVFAGQSGVGKSSLLNVLR--------------- 180
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
P L + + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + +
Sbjct: 181 -PDL------ELKTNDISSHLGRGKHTTRHVELIEV-GKGLVADTPGFSSLEFTDIELED 232
Query: 256 LAQTFPEV 263
L FPE+
Sbjct: 233 LNYCFPEI 240
>gi|304404148|ref|ZP_07385810.1| ribosome small subunit-dependent GTPase A [Paenibacillus
curdlanolyticus YK9]
gi|304347126|gb|EFM12958.1| ribosome small subunit-dependent GTPase A [Paenibacillus
curdlanolyticus YK9]
Length = 308
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 121/247 (48%), Gaps = 33/247 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK LVGD+VV D + G +E + RS+E++ PPVAN++ +L+FS
Sbjct: 33 CRARGIFKKRGESPLVGDRVVYSLTD--NGEGTVEQILPRSSELIRPPVANIELAVLVFS 90
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---------EEVLNTWKSRLHTWG 136
+ +P+L L +FLV E G+ + L+K +L E L ++ G
Sbjct: 91 VTEPELNFQLLDKFLVHIEHAGLDTVICLSKSDLASAEGKEGESAREALRRVRAVYEPLG 150
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
YE S G D L QRL + +V G SGVGKSSL+NAL A
Sbjct: 151 YEVFETSSRLSEGCDPLQQRLNHRLSVFAGQSGVGKSSLLNALVPGLTLETNA------- 203
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
+S + GRGKHTTRHV L+ GG++ADTPGF+Q ++ + L
Sbjct: 204 ---------------ISNRLGRGKHTTRHVELIETGIGGFVADTPGFSQLDFEELGIEDL 248
Query: 257 AQTFPEV 263
+ F E+
Sbjct: 249 SYCFREM 255
>gi|402839122|ref|ZP_10887615.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
OBRC8]
gi|402270661|gb|EJU19919.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
OBRC8]
Length = 305
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 22/234 (9%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R KK K+ ++VGD V + +D +++ ++E V+ R ++ P +AN+ ++L+FS+
Sbjct: 37 RGSFKKDKQNIIVGDYVDISILDEENKKAVVEKVYNRKNMLIRPSIANITKMILVFSVKN 96
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
PKL F + FLV AE I + + +K++L +++ GY+ + S + +
Sbjct: 97 PKLNTFLIDNFLVIAEKEQIDVVICFSKIDLDEDKYYKDIVKVYQNIGYQTVEISSDDNI 156
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
G++ + ++ TVI GPSG GKSSLIN + S F Q
Sbjct: 157 GIEDIKLKISGNITVIAGPSGAGKSSLINCI---------------------SDRFS-QT 194
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++S K +GK+TT + +LL Y+ADTPGF + + K L F E
Sbjct: 195 TSDISMKLQKGKNTTTYATLLEFDKNSYIADTPGFTSLKITDIDKYELKDYFLE 248
>gi|297583990|ref|YP_003699770.1| ribosome small subunit-dependent GTPase A [Bacillus
selenitireducens MLS10]
gi|297142447|gb|ADH99204.1| ribosome small subunit-dependent GTPase A [Bacillus
selenitireducens MLS10]
Length = 294
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 118/240 (49%), Gaps = 27/240 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + K VGD V + + D G I + +R +++ PPVANV+ +L+FS
Sbjct: 25 CRARGNFRNRKITPYVGDWVEYEAENHTD--GYILAIDERENQLVRPPVANVEQAVLIFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
++ PK P L RFLV E+ GI + ++K +L + E L ++ GY L
Sbjct: 83 VEDPKFSPVLLDRFLVHVEANGIEPLICMSKTDLNHDGIREELEYFEDAYTRIGYRVLRT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + ++ L L D+ +V G SGVGKSSL+N L+ P D
Sbjct: 143 SIYLEETIEQLKPYLTDRVSVFAGQSGVGKSSLLNILK--PGVEIKTD------------ 188
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E S GRGKHTTRHV L+PL+ GGY+ADTPGF+ + L FPE
Sbjct: 189 --------ETSKSLGRGKHTTRHVELIPLNEGGYVADTPGFSSLDFTGIEAIHLGDCFPE 240
>gi|266624060|ref|ZP_06116995.1| ribosome small subunit-dependent GTPase A [Clostridium hathewayi
DSM 13479]
gi|288864116|gb|EFC96414.1| ribosome small subunit-dependent GTPase A [Clostridium hathewayi
DSM 13479]
Length = 291
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 114/240 (47%), Gaps = 22/240 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V + +R G I+ + R E++ P VAN+D L++FS
Sbjct: 24 CKAKGVFRNKKIKPLVGDNVEFTVLSEAEREGNIDKILPRKNELVRPAVANIDQALVIFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P+ L RFLV E +P+ + NK +L + + + + GY F S
Sbjct: 84 ITHPEPNLNLLDRFLVMMEVQEVPVKICFNKTDLTGDGERDRLGNIYSSAGYPVYFTSTY 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
GLD L +TTV+ GPSGVGKSS+ N L P A
Sbjct: 144 ENSGLDELRVLTEGKTTVLAGPSGVGKSSITNLL--FPEA-------------------- 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA 265
+ G++S K RGKHTTRH L + Y+ DTPGF+ L ++ +L FPE A
Sbjct: 182 EMETGKISEKIQRGKHTTRHSELFAIGKDTYMMDTPGFSSMYLEELECGNLKDYFPEFAA 241
>gi|390453290|ref|ZP_10238818.1| GTPase engC [Paenibacillus peoriae KCTC 3763]
Length = 305
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 122/242 (50%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK + LVGD+VV + + GM++ + +R TE++ PPVAN +LLFS
Sbjct: 34 CRARGIFKKKEITPLVGDQVVYELTE--NGEGMVKEIRKRVTELIRPPVANTTLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-----EEVLNTWKSRLHTWGYEPL 140
+ +P L L +FLV E G+ + L K +L + ++ + + GYE L
Sbjct: 92 LREPDLNLPLLDKFLVHIEHAGLDTIICLTKRDLYEGSPSEDDTVLAVQEIYRKIGYEVL 151
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S + G L L Q +V G SGVGKSS++NAL+ +A
Sbjct: 152 VTSARTGEGTAELKNLLAGQISVFSGQSGVGKSSMLNALQPGLMLETSA----------- 200
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+S K GRGKHTTRHV L+PL GG++ADTPGF+Q L++ L+ F
Sbjct: 201 -----------ISNKLGRGKHTTRHVELIPLDNGGFVADTPGFSQLDFLELGVDELSPCF 249
Query: 261 PE 262
E
Sbjct: 250 RE 251
>gi|375309200|ref|ZP_09774481.1| GTPase engC [Paenibacillus sp. Aloe-11]
gi|375078509|gb|EHS56736.1| GTPase engC [Paenibacillus sp. Aloe-11]
Length = 305
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 122/242 (50%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK + LVGD+VV + + GM++ + +R TE++ PPVAN +LLFS
Sbjct: 34 CRARGIFKKKEITPLVGDQVVYELTE--NGEGMVKEIRKRVTELIRPPVANTTLAVLLFS 91
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-----EEVLNTWKSRLHTWGYEPL 140
+ +P L L +FLV E G+ + L K +L + ++ + + GYE L
Sbjct: 92 LREPDLNLPLLDKFLVHIEHAGLDTIICLTKRDLYEGSPSEDDTVLAVQEIYRKIGYEVL 151
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S + G L L Q +V G SGVGKSS++NAL+ +A
Sbjct: 152 VTSARTGEGTAELKNLLAGQISVFSGQSGVGKSSMLNALQPGLTLETSA----------- 200
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+S K GRGKHTTRHV L+PL GG++ADTPGF+Q L++ L+ F
Sbjct: 201 -----------ISNKLGRGKHTTRHVELIPLDNGGFVADTPGFSQLDFLELGVDELSPCF 249
Query: 261 PE 262
E
Sbjct: 250 RE 251
>gi|363891049|ref|ZP_09318332.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
CM5]
gi|361962016|gb|EHL15165.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
CM5]
Length = 305
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 22/234 (9%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R KK K+ ++VGD V + +D +++ ++E V+ R ++ P +AN+ ++L+FS+
Sbjct: 37 RGSFKKDKQNIIVGDYVDISILDEENKKAVVEKVYNRKNMLIRPSIANITKMILVFSVKN 96
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
PKL F + FLV AE I + + +K++L +E+ GY+ + S +
Sbjct: 97 PKLNTFLIDNFLVIAEKEQIDVVICFSKIDLDEEKNYKNIIKIYQDIGYQTVEISSNDNI 156
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
G++ + ++ TVI GPSG GKSSLIN + S F Q
Sbjct: 157 GIEDIKLKISGNITVIAGPSGAGKSSLINCI---------------------SDRFS-QT 194
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++S K +GK+TT + +LL + Y+ADTPGF + + K L F E
Sbjct: 195 TSDISMKLQKGKNTTTYATLLEFAKNSYIADTPGFTSLKITDIDKYELKDYFLE 248
>gi|294500978|ref|YP_003564678.1| ribosome small subunit-dependent GTPase A [Bacillus megaterium QM
B1551]
gi|294350915|gb|ADE71244.1| ribosome small subunit-dependent GTPase A [Bacillus megaterium QM
B1551]
Length = 293
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 124/241 (51%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + ++ G I + +R E++ PP++NVD LL+FS
Sbjct: 25 CRGRGVFRKKKVTPLVGDNVVFQAENKLE--GYILEIKERKNELVRPPISNVDQALLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC 142
+P L RFLV ES I + ++KV+L+ ++ + + GYE +
Sbjct: 83 AIEPDFSTMLLDRFLVLVESNHIEPIICISKVDLLSQQQKQEIEQYAEEYRKIGYEVILT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++ G++ + D+ TVI G SGVGKSSL+N L+ P L
Sbjct: 143 STVTEKGMEQIQPLFEDRVTVIAGQSGVGKSSLLNTLK----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S GRGKHTTRHV L+ G G +ADTPGF+ L + + L FPE
Sbjct: 184 ---ELKTNDISMSLGRGKHTTRHVELISF-GEGLVADTPGFSSLEFLTLEVEELTDCFPE 239
Query: 263 V 263
+
Sbjct: 240 M 240
>gi|197302402|ref|ZP_03167458.1| hypothetical protein RUMLAC_01130 [Ruminococcus lactaris ATCC
29176]
gi|197298523|gb|EDY33067.1| ribosome small subunit-dependent GTPase A [Ruminococcus lactaris
ATCC 29176]
Length = 292
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 119/237 (50%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K + LVGD+V + +D ++ G + + R E++ P VAN+D L++F+
Sbjct: 25 CKAKGSFRKNGIKPLVGDEVELEVLDEEEKIGNVTKILPRKNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +PK L RFLV E IP+ L NK +L + + + + GY LF S +
Sbjct: 85 VTEPKPHYNLLDRFLVMMERKEIPVILCFNKTDLAEHPEIAELEEVYASCGYPVLFTSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ ++ L Q L+ +TT I GPSGVGKSSLIN L+S
Sbjct: 145 KEENIEKLKQMLKGKTTSIAGPSGVGKSSLINLLQSGVQ--------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ +S Y+ DTPGF+ + K+ L FPE
Sbjct: 184 -METGSISRKIARGKHTTRHSELIMISPDSYIMDTPGFSSLYVNDFEKEELKYYFPE 239
>gi|384045169|ref|YP_005493186.1| Ribosome biogenesis GTPase rsgA [Bacillus megaterium WSH-002]
gi|345442860|gb|AEN87877.1| Ribosome biogenesis GTPase rsgA [Bacillus megaterium WSH-002]
Length = 293
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 124/241 (51%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + ++ G I + +R E++ PP++NVD LL+FS
Sbjct: 25 CRGRGVFRKKKVTPLVGDNVVFQAENKLE--GYILEIKERKNELVRPPISNVDQALLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC 142
+P L RFLV ES I + ++KV+L+ ++ + + GYE +
Sbjct: 83 AIEPDFSTMLLDRFLVLVESNHIEPIICISKVDLLSQQQKQEIEQYAEEYRKIGYEVILT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++ G++ + D+ TVI G SGVGKSSL+N L+ P L
Sbjct: 143 STVTEKGMEQIQPLFEDRVTVIAGQSGVGKSSLLNTLK----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S GRGKHTTRHV L+ G G +ADTPGF+ L + + L FPE
Sbjct: 184 ---ELKTNDISMSLGRGKHTTRHVELISF-GEGLVADTPGFSSLEFLTLEVEELTDCFPE 239
Query: 263 V 263
+
Sbjct: 240 M 240
>gi|404329179|ref|ZP_10969627.1| GTPase RsgA [Sporolactobacillus vineae DSM 21990 = SL153]
Length = 294
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 131/248 (52%), Gaps = 28/248 (11%)
Query: 19 KTG-VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
KTG ++ C R + +K LVGD VV + + D G I ++ R + PP+AN+
Sbjct: 17 KTGDRQIQCRARGIFRKRGVTPLVGDHVVYEAENPSD--GYIMSIRPRKNFLSRPPIANI 74
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-- 135
D LL+FS+ +P+ + L RFL+ E++ I + L K +L+ E+ + K +L +
Sbjct: 75 DQALLVFSVSEPEFDSQLLDRFLIIMEASRIHSVICLTKEDLLSEDQESLLKKQLSVYRH 134
Query: 136 -GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + S ++ G+D L Q L + TV+ G SGVGKSSL+N + ++ +
Sbjct: 135 AGYPVIVTSSKAHTGIDELRQILDGKVTVVTGQSGVGKSSLLNQINTTLN---------- 184
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
E Q +S GRGKHTTRHV+LL + G++ADTPGF+ + ++
Sbjct: 185 ---------IETQ---SISHALGRGKHTTRHVALLQIGRSGFVADTPGFSSLDVTQIDAS 232
Query: 255 SLAQTFPE 262
LA FPE
Sbjct: 233 ELAGCFPE 240
>gi|292670248|ref|ZP_06603674.1| ribosome small subunit-dependent GTPase A [Selenomonas noxia ATCC
43541]
gi|292648200|gb|EFF66172.1| ribosome small subunit-dependent GTPase A [Selenomonas noxia ATCC
43541]
Length = 290
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 127/250 (50%), Gaps = 35/250 (14%)
Query: 24 LLCVVRALLKKIKR--RVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+LC +R +KK + +L GD VV+ I + G+IE+V QRS + P VAN+ ++
Sbjct: 24 ILCKLRGRIKKGRSDTEILPGDIVVLDRIS--PKEGVIEHVEQRSNLLQRPRVANLTQIV 81
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELV---DEEVLNTWKSRLHTWGY 137
+ + P P ++RFLV AE +G + L +NK++L E L +++ GY
Sbjct: 82 ITVAAASPDPHPLVVSRFLVLAECSGAAKIVLCINKMDLYRGDSEHFLAEYEA----AGY 137
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
L S E GLD L +RL + TV GPSG GKSSL+NAL +P
Sbjct: 138 PVLRVSAECGTGLDELRRRLAGEITVFAGPSGAGKSSLLNAL----------------DP 181
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
L G VS K GRG+HTTR LLP GY+ DTPGF Q L +++++ L
Sbjct: 182 SLA------LVTGAVSEKIGRGRHTTRRAELLPFM-NGYVVDTPGFTQQELTEISQEKLT 234
Query: 258 QTFPEVCAVG 267
F E G
Sbjct: 235 ACFSEFSKYG 244
>gi|422344982|ref|ZP_16425905.1| ribosome small subunit-dependent GTPase A [Selenomonas noxia F0398]
gi|355376124|gb|EHG23385.1| ribosome small subunit-dependent GTPase A [Selenomonas noxia F0398]
Length = 290
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 127/250 (50%), Gaps = 35/250 (14%)
Query: 24 LLCVVRALLKKIKR--RVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+LC +R +KK + +L GD VV+ I + G+IE+V QRS + P VAN+ ++
Sbjct: 24 ILCKLRGRIKKGRSDTEILPGDIVVLDRIS--PKEGVIEHVEQRSNLLQRPRVANLTQIV 81
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELV---DEEVLNTWKSRLHTWGY 137
+ + P P ++RFLV AE +G + L +NK++L E L +++ GY
Sbjct: 82 ITVAAASPDPHPLVVSRFLVLAECSGAARIVLCINKMDLYRGDSEHFLAEYEA----AGY 137
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
L S E GLD L +RL + TV GPSG GKSSL+NAL +P
Sbjct: 138 PVLRVSAECGTGLDDLRRRLAGEITVFAGPSGAGKSSLLNAL----------------DP 181
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
L G VS K GRG+HTTR LLP GY+ DTPGF Q L +++++ L
Sbjct: 182 SLALV------TGAVSEKIGRGRHTTRRAELLPFM-NGYVVDTPGFTQQELTEISQEKLT 234
Query: 258 QTFPEVCAVG 267
F E G
Sbjct: 235 ACFSEFSKYG 244
>gi|399889947|ref|ZP_10775824.1| GTPase RsgA [Clostridium arbusti SL206]
Length = 288
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 26/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + LVGD V+ ID +G I+ + R++E++ P +ANV ++F+
Sbjct: 24 CKARGRFRHRDLSPLVGDNVL---IDLDKDKGFIKEILTRTSELIRPAIANVTQAFIVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ QP L +FL+ E + + + NK++L + L S + + GYE ++ + +
Sbjct: 81 VRQPDFNMDLLNKFLILCEINKLKVVICFNKIDLATDANLEETVSLVKSIGYEIIYLNAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ G++ + L TV GPSGVGKS+++N+ ILG E
Sbjct: 141 AEKGIEEIKSHLEGNVTVFCGPSGVGKSTILNS-------------------ILGHSAME 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S + RGKHTTRH L+ + GGY+AD+PGF+ + + K+SL FPE
Sbjct: 182 ---TGAISERLKRGKHTTRHCELIEID-GGYVADSPGFSSLDIGFIKKESLQLCFPE 234
>gi|310659152|ref|YP_003936873.1| EngC [[Clostridium] sticklandii]
gi|308825930|emb|CBH21968.1| EngC [[Clostridium] sticklandii]
Length = 297
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 120/237 (50%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K ++GD V + +D V ++GMIE+V +RS+ + PP+ANV LL+F+
Sbjct: 27 CRARGIFRKDSISPVIGDVVEMTVVDPVTKKGMIESVKERSSYLFRPPIANVTKALLIFA 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P+ + RF+V AE + +T+ NKV+L E + GY + SV+
Sbjct: 87 VKSPEPNLSLIDRFIVLAERERLDITICFNKVDLDTEGKYEDYVKIYERAGYTVIAASVK 146
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
L + +D TVI GPSGVGKSSL+N + +P L K
Sbjct: 147 HDLDFQKIKDEFKDNITVIAGPSGVGKSSLLNKI----------------DPKLNLK--- 187
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++S K RG+HTTR+ L+ L +ADTPGF+ +L + + L + F E
Sbjct: 188 ---TSQISEKLQRGRHTTRYAQLIELEENALVADTPGFSSLNLDLIDEVELKEYFVE 241
>gi|225418647|ref|ZP_03761836.1| hypothetical protein CLOSTASPAR_05871, partial [Clostridium
asparagiforme DSM 15981]
gi|225041827|gb|EEG52073.1| hypothetical protein CLOSTASPAR_05871 [Clostridium asparagiforme
DSM 15981]
Length = 237
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 109/219 (49%), Gaps = 22/219 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V +D + G I+ + R ++ P ANVD +++FS
Sbjct: 25 CKAKGVFRNKKIKPLVGDDVEFSVLDEEELTGNIDRILPRKNALVRPAAANVDQAMVVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P L RFLV E +P+ + NKV+L +++ + GYE F S
Sbjct: 85 ITHPAPNLNLLDRFLVMMERQQVPVVICFNKVDLCGGDLMEQYGRIYRQAGYEVEFISTI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K GLD + +RL+ +TTV+ GPSGVGKSSL N L DAA
Sbjct: 145 DKRGLDRIRERLQGKTTVLAGPSGVGKSSLTNELH-----PDAA---------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244
G++S K RGKHTTRH L + ++ DTPGF+
Sbjct: 184 -METGDISRKIERGKHTTRHSQLFHIGEDTFMMDTPGFS 221
>gi|427414316|ref|ZP_18904506.1| ribosome small subunit-dependent GTPase A [Veillonella ratti
ACS-216-V-Col6b]
gi|425714692|gb|EKU77695.1| ribosome small subunit-dependent GTPase A [Veillonella ratti
ACS-216-V-Col6b]
Length = 286
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 121/250 (48%), Gaps = 29/250 (11%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
D+ G C VR LK+ + +LVGD+V D G IE + R ++ P VAN
Sbjct: 17 QDEHGEVHECKVRGRLKQGRYSLLVGDRV------SFDPAGTIEAIMTRHNQLKRPHVAN 70
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
+D ++L+ + +P + L + ++ E IPL L +NK +L DE + G
Sbjct: 71 LDQVILVVAAHEPDINELLLNKLIIMIEHADIPLVLCINKCDLRDENTA-SLAEIYRQIG 129
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y + S + GLD L ++L + + GPSGVGKSSL+NA+ E
Sbjct: 130 YTVIETSTRTGEGLDILREQLHHKVSAFAGPSGVGKSSLLNAI----------------E 173
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
P + GEVS K RG+HTTRH SL L ++ DTPGF+ +++++ L
Sbjct: 174 PSFAFQ------TGEVSDKIKRGRHTTRHASLYSLDEDSFIMDTPGFSAIDFSEISEERL 227
Query: 257 AQTFPEVCAV 266
+PE A
Sbjct: 228 PSLYPEFLAA 237
>gi|260437312|ref|ZP_05791128.1| ribosome small subunit-dependent GTPase A [Butyrivibrio crossotus
DSM 2876]
gi|292810224|gb|EFF69429.1| ribosome small subunit-dependent GTPase A [Butyrivibrio crossotus
DSM 2876]
Length = 292
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + K + LVGD V++ I + G I ++ R E++ P VAN+D ++++F+
Sbjct: 25 CKAKGVFRNKKIKPLVGDNVLIDVISDSEHTGNITDILPRKNELIRPAVANIDQVMIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P+ L+RF+V E I + NK + VD E L+ G + SV+
Sbjct: 85 SLSPEPNFNLLSRFIVMMEYNRIDTVICFNKTDQVDSESLDKMVKDFSGCGSRIITSSVK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G+D + + L+++TT + GPSGVGKSS++N++ P A
Sbjct: 145 ENKGIDEIREVLQNKTTALAGPSGVGKSSILNSV--FPEA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ R GE+S K RGKHTTRH + ++G ++ DTPGF V + L F E
Sbjct: 183 ESRTGEISEKINRGKHTTRHTEIFNITGDTFVLDTPGFTSLDYNVVEDKDLRFYFNE 239
>gi|363891851|ref|ZP_09319026.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
CM2]
gi|361964846|gb|EHL17852.1| ribosome small subunit-dependent GTPase A [Eubacteriaceae bacterium
CM2]
Length = 305
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 22/234 (9%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R KK K+ ++VGD V + +D +++ ++E V+ R ++ P +AN+ ++L+FS+
Sbjct: 37 RGSFKKDKQNIIVGDYVDISILDEENKKAVVEKVYNRKNMLIRPSIANITKMILVFSVKN 96
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
PKL F + FLV AE I + + +K++L +++ GY+ + S +
Sbjct: 97 PKLNTFLIDNFLVIAEKEQIDVVICFSKIDLDEDKNYKDIVKVYQNIGYQTVEISSNDNI 156
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
G++ + ++ TVI GPSG GKSSLIN + S F Q
Sbjct: 157 GIEDIKLKISGNITVIAGPSGAGKSSLINCI---------------------SDRFS-QT 194
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++S K +GK+TT + +LL + Y+ADTPGF + + K L F E
Sbjct: 195 TSDISMKLQKGKNTTTYATLLEFAKNSYIADTPGFTSLKITDIDKYELKDYFLE 248
>gi|229828528|ref|ZP_04454597.1| hypothetical protein GCWU000342_00592 [Shuttleworthia satelles DSM
14600]
gi|229793122|gb|EEP29236.1| hypothetical protein GCWU000342_00592 [Shuttleworthia satelles DSM
14600]
Length = 355
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 107/208 (51%), Gaps = 22/208 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K K + + GD V + D VD G I ++ +R + ++ P VANVD L++F+
Sbjct: 25 CKARGAFRKKKIKPVAGDAVEIEITDPVDAEGNIVSIAERRSLLIRPAVANVDQALVIFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L RFLV E IP T+ NKV+LVD E + + Y F S +
Sbjct: 85 ARKPMPNFNLLDRFLVMMEQAEIPTTILFNKVDLVDREEIERIRRIYAASAYPIHFMSAK 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
LGLD + ++L ++TT + GPSGVGKSSLIN L+S+ A
Sbjct: 145 ENLGLDEIRRQLSNRTTTVAGPSGVGKSSLINRLQSATRMQTAG---------------- 188
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSG 233
+S K GRG+HTTRH L+PL G
Sbjct: 189 ------ISVKLGRGRHTTRHSELIPLEG 210
>gi|153954001|ref|YP_001394766.1| ribosome-associated GTPase [Clostridium kluyveri DSM 555]
gi|219854615|ref|YP_002471737.1| hypothetical protein CKR_1272 [Clostridium kluyveri NBRC 12016]
gi|254766367|sp|B9E1E8.1|RSGA_CLOK1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|254766368|sp|A5N7Y7.1|RSGA_CLOK5 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|146346882|gb|EDK33418.1| Predicted GTPase [Clostridium kluyveri DSM 555]
gi|219568339|dbj|BAH06323.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 287
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 26/223 (11%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV I +G+I+ + R +++ P VANV L++F+ + P++ L +F
Sbjct: 38 MVGDKV---EIKLERDQGIIDEICPRISQLKRPAVANVTQALVVFAFNHPEINEDLLNKF 94
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
L+ E + + NK++L D+E + GYE +F + G+D + ++L+D
Sbjct: 95 LISCEFNNLKPIVCFNKLDLADKEKKLDVIDMIRNTGYEVIFLKAKEGYGIDKVREKLKD 154
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
TV+ GPSGVGKS+++NA I G + E G++S K RG
Sbjct: 155 NITVLCGPSGVGKSTILNA-------------------IYGKELME---TGQISHKLNRG 192
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
KHTTRH ++ L G++ DTPGF+ + +TK L FPE
Sbjct: 193 KHTTRHSEIIELE-DGFMVDTPGFSSLDIGHITKDKLQYCFPE 234
>gi|442805496|ref|YP_007373645.1| putative ribosome biogenesis GTPase RsgA [Clostridium stercorarium
subsp. stercorarium DSM 8532]
gi|442741346|gb|AGC69035.1| putative ribosome biogenesis GTPase RsgA [Clostridium stercorarium
subsp. stercorarium DSM 8532]
Length = 294
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 120/237 (50%), Gaps = 23/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C VR + +K + GD V D + G IE + +R + PPVANV+ + ++ +
Sbjct: 25 CRVRGVFRKKGITPVAGDFVEFSITDETAKEGWIEEIEERQNFFVRPPVANVNQIAIVIA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P+ + + + L+ AE GI + +NK++L++E+ L K+ GY+ + S
Sbjct: 85 GTSPEPDFLLVDKLLITAERNGITPLIVINKIDLINEQELEEVKNIYVGTGYQVVAISKV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K G D L ++L+ TV G SGVGKS+++N + +D W
Sbjct: 145 GKRGYDELHEKLKGHRTVFAGQSGVGKSTILNNI-----------MDAWV---------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S + RGKHTTRHV LLPL GY+ DTPGF+ +L + L+ +PE
Sbjct: 184 -METGEMS-RIQRGKHTTRHVQLLPLDNDGYVVDTPGFSSLTLEGIEHAKLSSMYPE 238
>gi|254526380|ref|ZP_05138432.1| ribosome small subunit-dependent GTPase A [Prochlorococcus marinus
str. MIT 9202]
gi|221537804|gb|EEE40257.1| ribosome small subunit-dependent GTPase A [Prochlorococcus marinus
str. MIT 9202]
Length = 305
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 24/226 (10%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+ LC VR + + + VGD V + +ID +R +I ++ +R ++ P VANV ++ +
Sbjct: 34 KFLCKVRKSINFKDQLIYVGDAVFIENIDLKRKRALITSLKKRKNLLVRPSVANVSNIYI 93
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
FS+++PKL + RFL+ AES G+ ++L L K +L+ + ++ WGY+ +
Sbjct: 94 TFSVEEPKLNLSQVNRFLISAESMGVEVSLVLTKCDLISDTRRFFLINKFEKWGYQAITL 153
Query: 143 SVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
++E ++L+ L+ + ++ +GPSGVGK++L+N + S A
Sbjct: 154 NLEKSDHFNNLIVELKQKECSIFMGPSGVGKTTLLNMIIPGLQNSTAP------------ 201
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN-QP 246
VS K RGK+TTR+V L +S Y+ DTPGFN QP
Sbjct: 202 ----------VSNKIKRGKNTTRNVELFSISNQSYIVDTPGFNMQP 237
>gi|317129254|ref|YP_004095536.1| ribosome small subunit-dependent GTPase A [Bacillus
cellulosilyticus DSM 2522]
gi|315474202|gb|ADU30805.1| ribosome small subunit-dependent GTPase A [Bacillus
cellulosilyticus DSM 2522]
Length = 294
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 122/241 (50%), Gaps = 27/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K K LVGD V + + D G + V +R E++ PP++NVD +L+FS
Sbjct: 25 CRGRGNFRKRKITPLVGDWVEFEAENKTD--GYLLEVNERKNELIRPPISNVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
++P L RFLV E+ I + ++K++L+++ E + +KS + YE +
Sbjct: 83 TEEPAFSSLLLDRFLVHVEANQISPIICMSKIDLLEKVKGEEMQQYKSYYKSLDYEVVST 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + ++ L L +V G SGVGKSSL+NALR + A
Sbjct: 143 SIFVEETIEDLRPYLIGHVSVFAGQSGVGKSSLLNALRPELNIETAP------------- 189
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+S GRGKHTTRHV L+ + GGY+ADTPGF+ + + L+ FPE
Sbjct: 190 ---------ISKHLGRGKHTTRHVELIKIDEGGYVADTPGFSSLDFQGMEAEDLSLYFPE 240
Query: 263 V 263
+
Sbjct: 241 M 241
>gi|336432650|ref|ZP_08612481.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
2_1_58FAA]
gi|336017932|gb|EGN47685.1| ribosome biogenesis GTPase RsgA [Lachnospiraceae bacterium
2_1_58FAA]
Length = 292
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 116/240 (48%), Gaps = 22/240 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V + +D ++ G I +F R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRKEKIKPLVGDNVRIEILDEENKTGNIVEIFPRKNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV E IP+ L NK ++ + ++ GY +F S
Sbjct: 85 VTKPTPHFNLLDRFLVMMERKEIPVVLCFNKKDIATSPEIAELEAIYEKCGYPIVFTSAL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ ++ + + L +TT I GPSGVGKSSLIN L++
Sbjct: 145 EQENIEEIRRLLLKKTTAIAGPSGVGKSSLINLLQNQVQME------------------- 185
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA 265
G +S K RGKHTTRH L+ + Y+ DTPGF+ + K+ L F E +
Sbjct: 186 ---TGTISRKIERGKHTTRHSELIAVDADSYIMDTPGFSSLYVNDFEKEELKYYFREFAS 242
>gi|154505947|ref|ZP_02042685.1| hypothetical protein RUMGNA_03489 [Ruminococcus gnavus ATCC 29149]
gi|153793965|gb|EDN76385.1| ribosome small subunit-dependent GTPase A [Ruminococcus gnavus ATCC
29149]
Length = 292
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 116/240 (48%), Gaps = 22/240 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K K + LVGD V + +D ++ G I +F R E++ P VAN+D L++F+
Sbjct: 25 CKAKGVFRKEKIKPLVGDNVRIEILDEENKTGNIVEIFPRKNELIRPAVANIDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV E IP+ L NK ++ + ++ GY +F S
Sbjct: 85 VTKPTPHFNLLDRFLVMMERKEIPVVLCFNKKDIATSPEIAELEAIYEKCGYPIVFTSAL 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ ++ + + L +TT I GPSGVGKSSLIN L++
Sbjct: 145 EQENIEEIRRLLLKKTTAIAGPSGVGKSSLINLLQNQVQME------------------- 185
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA 265
G +S K RGKHTTRH L+ + Y+ DTPGF+ + K+ L F E +
Sbjct: 186 ---TGTISRKIERGKHTTRHSELIAVDADSYIMDTPGFSSLYVNDFEKEELKYYFREFAS 242
>gi|410658810|ref|YP_006911181.1| Ribosome small subunit-stimulated GTPase EngC [Dehalobacter sp.
DCA]
gi|410661796|ref|YP_006914167.1| Ribosome small subunit-stimulated GTPase EngC [Dehalobacter sp. CF]
gi|409021165|gb|AFV03196.1| Ribosome small subunit-stimulated GTPase EngC [Dehalobacter sp.
DCA]
gi|409024152|gb|AFV06182.1| Ribosome small subunit-stimulated GTPase EngC [Dehalobacter sp. CF]
Length = 289
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 124/242 (51%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + K+ + GDKV+V + + IE V +R ++ P +ANVD +LL+FS
Sbjct: 26 CSLRGRFRVKKQEFIPGDKVMV--LPGTGDKATIEKVLERQNSLVRPYIANVDQVLLVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKS-RLHTWGYEPLFCSV 144
+ P + L R L++A GI + + K +L +V N S GYE + S
Sbjct: 84 LKTPDPDYNLLDRLLIQAGEAGISILIVFTKEDL---DVGNKTPSVDYRRIGYEVVQVSN 140
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ G+D + +RL+ +V+ GPSG GKSSLINAL
Sbjct: 141 RTLTGIDEIAERLKGNVSVLAGPSGSGKSSLINALNPG---------------------- 178
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
+ + G VS K GRG+HTTRHV LL ++ GG +ADTPGF+ L ++ ++ L FPE
Sbjct: 179 KTLKTGNVSDKIGRGRHTTRHVELLSVA-GGLVADTPGFSSLYLPEMKREELQSYFPEFV 237
Query: 265 AV 266
+
Sbjct: 238 RI 239
>gi|374997145|ref|YP_004972644.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
orientis DSM 765]
gi|357215511|gb|AET70129.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
orientis DSM 765]
Length = 297
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 128/243 (52%), Gaps = 30/243 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + + +G IE+V R E+ PP+ANVD +L+F+
Sbjct: 25 CSLRGRFRIKDQEFLPGDRVTILPKEE-ENKGTIESVAPRRNELTRPPIANVDQAILVFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL----NTWK--SRLHTWGYEP 139
M PK + L R L++A + I + KV+ E VL N ++ GY
Sbjct: 84 MTSPKPDLNLLDRLLIQAADSDIEPIIVFTKVDKYQETVLQGAPNLYELTEDYRKIGYTV 143
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S ++ G+ + RL+++ +V+ GPSG GKSSL+NAL SP
Sbjct: 144 FEVSSKTGQGIPEIGDRLKNKISVLAGPSGAGKSSLVNAL--SPG--------------- 186
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
++ + G++S+KS RG+HTTRHV L+ S GG LADTPGF+ L ++ + LA
Sbjct: 187 -----KELKTGQISSKSKRGRHTTRHVELMVCS-GGLLADTPGFSSLLLPEMKRAELADY 240
Query: 260 FPE 262
FPE
Sbjct: 241 FPE 243
>gi|28210914|ref|NP_781858.1| ribosome-associated GTPase [Clostridium tetani E88]
gi|38257540|sp|Q895P5.1|RSGA_CLOTE RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|28203353|gb|AAO35795.1| GTPase [Clostridium tetani E88]
Length = 290
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 33/227 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV + ID + +G IE +F+R +++ P V+N+ +++F+ P + L +F
Sbjct: 38 MVGDKVEI-EIDN-NSKGTIEKIFERKNKLIRPAVSNISQAIIVFAFKNPNINLDLLNKF 95
Query: 100 LVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155
L++ E I +A NKV+LV+ EEV++ KS GYE ++ + + +G++ + +
Sbjct: 96 LLQCEYNEINAVVAFNKVDLVENPEKEEVVDIIKS----AGYEVIYLNAKEGMGIEKIRE 151
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
+L+ V+ GPSG GKS++IN L +G E G++S K
Sbjct: 152 KLKGNLNVLCGPSGAGKSTIINKL-------------------VGKDVME---TGQISEK 189
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RGKHTTRH L+ + G+L DTPGF+ S+ + K+ + FPE
Sbjct: 190 LKRGKHTTRHSELIEVE-DGFLVDTPGFSSLSIEDIEKEEIQFLFPE 235
>gi|333897216|ref|YP_004471090.1| ribosome biogenesis GTPase RsgA [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112481|gb|AEF17418.1| ribosome biogenesis GTPase RsgA [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 291
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 34/227 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGD V V S + D G I N+ R +++ PPV+NVD ++ FS+ P L L +
Sbjct: 40 IVGDYVDVESQNLKD--GFIVNIHDRKNQLVRPPVSNVDQAIITFSIVSPDLNRLQLDKM 97
Query: 100 LVEAESTGIPLTLALNKVELVDEE----VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155
++ E I + +NKV+LV+E+ + NT+K GYE + S +G+D L
Sbjct: 98 IILTEVNEINPIICINKVDLVNEDEYMPIYNTYKK----LGYEVITTSKYDNIGIDKLKT 153
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
L+ +T+ GPSGVGKSSLIN + E Q +G++S K
Sbjct: 154 ILKGKTSFFTGPSGVGKSSLINCIHGH----------------------ERQEIGDLSEK 191
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RGKHTTR+V L+P+ GGY+ DTPGF + L + +++L + + +
Sbjct: 192 LNRGKHTTRNVELIPID-GGYVLDTPGFTSLN-LDIDEKNLKRFYKD 236
>gi|374708690|ref|ZP_09713124.1| GTPase RsgA [Sporolactobacillus inulinus CASD]
Length = 296
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 124/246 (50%), Gaps = 27/246 (10%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
++ C R + +K K LVGD V + D G I ++ R + PP+AN+D +L
Sbjct: 22 DIQCRARGIFRKRKVSPLVGDHVTYEAKKPSD--GYILSIQARKNALKRPPIANIDQAIL 79
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEP 139
+FS+++P + L RFLV E+ I + K +L+ L+ +K++++ + GY
Sbjct: 80 VFSVEEPSFDCQLLDRFLVTMEAHAIHSLICFTKKDLLTANDLSKFKTQINIYERIGYPV 139
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
F S + G+ L +++ + +V+ G SGVGKS+L+N L SS
Sbjct: 140 FFISSVTNEGISELKKQMAHRISVVTGQSGVGKSTLLNHLNSS----------------- 182
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
E Q +S GRGKHTTRH L+P+ GY+ADTPGF+ + ++ L
Sbjct: 183 --LSIETQ---SISQALGRGKHTTRHTELIPIVEDGYIADTPGFSALEIPEIVSVDLENC 237
Query: 260 FPEVCA 265
FPE A
Sbjct: 238 FPEFSA 243
>gi|343520557|ref|ZP_08757526.1| ribosome small subunit-dependent GTPase A [Parvimonas sp. oral
taxon 393 str. F0440]
gi|343397515|gb|EGV10049.1| ribosome small subunit-dependent GTPase A [Parvimonas sp. oral
taxon 393 str. F0440]
Length = 291
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 115/223 (51%), Gaps = 27/223 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R + + K +VGD V + + D I VF+R EIL PPV NVD +++FSM +
Sbjct: 29 RGVFRNKKLSPMVGDNVKIEIFE--DDTAYIVEVFERKNEILRPPVVNVDQAIIVFSMKE 86
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
P++ + R+++ E IP+ L LNK +L+D+E+ +K+ GY+ +F S+ L
Sbjct: 87 PEISYKIIDRYIMYYEIMKIPIVLCLNKCDLIDKELEIDFKNTYEKLGYKIIFNSIS--L 144
Query: 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
L + + +D+ +VI GPSGVGKS+++N L + W
Sbjct: 145 DNKKLFEEICKDKISVITGPSGVGKSTILNFLNPKYNI--------W------------- 183
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
VGE+S K+ RGKHTTR +L ++ DT GF L K
Sbjct: 184 -VGEISNKTKRGKHTTRAATLYEFFDNSFIIDTAGFTSLDLTK 225
>gi|365157098|ref|ZP_09353379.1| ribosome small subunit-dependent GTPase A [Bacillus smithii
7_3_47FAA]
gi|363625832|gb|EHL76843.1| ribosome small subunit-dependent GTPase A [Bacillus smithii
7_3_47FAA]
Length = 293
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 127/241 (52%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V ++ G I ++ +R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKQKISPLVGDYVEYQL--ESNQEGYILSIEKRKNELIRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFC 142
+ +P L RFLV ES I + L K++L+ DE+ ++++ GY+ +
Sbjct: 83 VARPNFHLGLLDRFLVLIESKAITPIICLTKMDLLSPEDEQKIHSYCEDYREIGYQVITT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SV++ GLD + L+++T+V G SGVGKSSL+NALR D E
Sbjct: 143 SVKNGSGLDQIRAVLQEKTSVFAGQSGVGKSSLLNALRP----------DLQLE------ 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++S GRGKHTTRHV L+ + G +ADTPGF+ L + L+ FPE
Sbjct: 187 ------TKDISDSLGRGKHTTRHVELIEID-NGLVADTPGFSSLELGDLDLDELSSCFPE 239
Query: 263 V 263
+
Sbjct: 240 I 240
>gi|302797308|ref|XP_002980415.1| hypothetical protein SELMODRAFT_444482 [Selaginella moellendorffii]
gi|300152031|gb|EFJ18675.1| hypothetical protein SELMODRAFT_444482 [Selaginella moellendorffii]
Length = 273
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 106/182 (58%), Gaps = 25/182 (13%)
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
L +++P+L+P + RFLVE ESTGIPL + L+K +LV +E+ ++W+ +L GY+
Sbjct: 14 LASGINRPRLDPVIMNRFLVEGESTGIPLAVVLSKADLVTQEMKDSWEKQLMESGYKLYI 73
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
CSVE+ +GL D+T+ + GPSGV KSSLIN LR + P
Sbjct: 74 CSVETGMGLH------EDKTSAVFGPSGVRKSSLINFLRGK----------SCLPP---- 113
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ Q + EV + RG+HT RH+S L+ LADTPGF+ PSL VT+ SLA FP
Sbjct: 114 --DDIQALDEVDNEVIRGRHTMRHIS---LASAIMLADTPGFSYPSLSMVTRNSLALLFP 168
Query: 262 EV 263
+
Sbjct: 169 QT 170
>gi|160893334|ref|ZP_02074121.1| hypothetical protein CLOL250_00883 [Clostridium sp. L2-50]
gi|156865026|gb|EDO58457.1| ribosome small subunit-dependent GTPase A [Clostridium sp. L2-50]
Length = 292
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 121/253 (47%), Gaps = 34/253 (13%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ GV C + + + K + LVGD V + +D G IE++ R + P VANVD
Sbjct: 18 ENGVTYECKAKGVFRNRKIKPLVGDNVEIEILDAEKNLGNIEDILPRFNWLNRPAVANVD 77
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL----VDEEVLNTWKSRLHT 134
+++F++ P L RFL+ E +P + NK++L E++ ++
Sbjct: 78 QTVIIFAVSAPAPNFNLLDRFLINMEQHEVPTIICFNKIDLEGFRQSEDICRSYTKS--- 134
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GYE LF S ES G+ +L ++ +TTV GPSGVGKSS +N+L
Sbjct: 135 -GYEVLFISAESGYGIHTLEAVIKGKTTVFAGPSGVGKSSTLNSL--------------- 178
Query: 195 FEPILGSKWFEDQRV--GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
F D V G +S K RGKHTTRH L+ + Y+ DTPGF+ +
Sbjct: 179 ---------FPDANVQTGGLSEKIQRGKHTTRHSELMFVDDDTYIMDTPGFSSLYTEGIE 229
Query: 253 KQSLAQTFPEVCA 265
+ L FPE+ A
Sbjct: 230 AEDLKLYFPEIAA 242
>gi|157412357|ref|YP_001483223.1| GTPase [Prochlorococcus marinus str. MIT 9215]
gi|157386932|gb|ABV49637.1| Predicted GTPase [Prochlorococcus marinus str. MIT 9215]
Length = 305
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 24/226 (10%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+ LC VR + + + VGD+V + +ID +R +I ++ +R ++ P VAN+ ++ +
Sbjct: 34 KFLCKVRKSINFKDQLIYVGDQVFIENIDLKRKRALITSLKKRKNLLVRPSVANISNIYI 93
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
FS+++P+L + RFL+ AES G+ ++L L K +L+ + ++ WGY+ +
Sbjct: 94 TFSVEEPELNLSQVNRFLISAESMGVEVSLVLTKCDLISDTRRFFLINKFEKWGYQAITL 153
Query: 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
++E ++L+ L + + ++ +GPSGVGK++L+N + S A
Sbjct: 154 NLEKSDHFNNLIVELKKKECSIFMGPSGVGKTTLLNMIIPGLQNSTAP------------ 201
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN-QP 246
VS K RGK+TTR+V L +S Y+ DTPGFN QP
Sbjct: 202 ----------VSNKIKRGKNTTRNVELFSISNQSYIVDTPGFNMQP 237
>gi|225028099|ref|ZP_03717291.1| hypothetical protein EUBHAL_02369 [Eubacterium hallii DSM 3353]
gi|224954569|gb|EEG35778.1| ribosome small subunit-dependent GTPase A [Eubacterium hallii DSM
3353]
Length = 311
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 114/237 (48%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + K + VGD V + + ++ G + + +R +++ P ANVD L++F+
Sbjct: 44 CRARGIFRNKKMKPNVGDVVDIDILSEEEKTGNLVKIHKRKNQLIRPMAANVDQALVIFA 103
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P+ L RFL+ E IP+ + NK +L E + + G + +F +
Sbjct: 104 VHEPEPNFHLLNRFLITMEQQEIPVIICFNKTDLATTEQMQQLEKDYENSGCQVIFQAAA 163
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+ + + LR +TT++ GPSGVGKSS +N + +
Sbjct: 164 TGEGITQIEELLRGRTTIMAGPSGVGKSSTLNCISKE----------------------K 201
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K RGKHTTRH L+ + YL DTPGF+ L + K+ L FPE
Sbjct: 202 QMETGAVSEKIKRGKHTTRHSELIHIGEDTYLMDTPGFSSLFLENIEKEDLKYYFPE 258
>gi|331269679|ref|YP_004396171.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum
BKT015925]
gi|329126229|gb|AEB76174.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum
BKT015925]
Length = 290
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K +VGD+V++ + + D G IE + +R ++ P VAN+ ++F+
Sbjct: 24 CKARGKFRKKGLTPMVGDRVIITTNN--DNYGAIEEICERDNYLIRPQVANISQAFIVFA 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P++ L +FL++ ES I + NK++L ++ + ++ GYE LF +
Sbjct: 82 LKNPEINLDLLNKFLLQCESKNIKAIVCFNKLDLCEDYKNHEAVKMINESGYECLFLKAK 141
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ GLD L ++L+ V GPSGVGKS+++N L +G E
Sbjct: 142 EEQGLDELKEKLQGNINVFCGPSGVGKSTILNKL-------------------VGRDIME 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S + RGKHTTRH L+ ++ G++ DTPGF+ + TK+ L + FPE
Sbjct: 183 ---TGLISERLKRGKHTTRHSELVEVN-NGFVVDTPGFSTLDIKFDTKEELKEYFPE 235
>gi|410456983|ref|ZP_11310830.1| GTPase RsgA [Bacillus bataviensis LMG 21833]
gi|409926957|gb|EKN64108.1| GTPase RsgA [Bacillus bataviensis LMG 21833]
Length = 293
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 126/241 (52%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + ++ G I V +R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDEVVFQAENNLE--GYILEVKERKNELIRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFC 142
+P L RFLV E I + + K++L +++ ++ + + GYE +
Sbjct: 83 AVEPDFSTVLLDRFLVLVEFNHIEPLICITKMDLTNQDQKKQISEYAEQYKRAGYEVILT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S E++ G++ L + ++ +V G SGVGKSSL+N LR P L
Sbjct: 143 SSETEAGIELLNPHIENKISVFAGQSGVGKSSLLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + +S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + L FPE
Sbjct: 184 ---ELKTNGISSHLGRGKHTTRHVELIRI-GNGLIADTPGFSSLEFTNIDAEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|302671342|ref|YP_003831302.1| ribosome small subunit-dependent GTPase A RsgA [Butyrivibrio
proteoclasticus B316]
gi|302395815|gb|ADL34720.1| ribosome small subunit-dependent GTPase A RsgA [Butyrivibrio
proteoclasticus B316]
Length = 323
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 119/261 (45%), Gaps = 46/261 (17%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + +K + LVGD V + ID + G I +F R ++L PPVANVD ++LF+
Sbjct: 25 CKAKGIFRKTNLKPLVGDDVEIDIIDEEKKLGNITEIFPRKNQLLRPPVANVDQAVILFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFL+ +P+ + NK ++ GY+ LF SV
Sbjct: 85 IVKPNPSYNLLDRFLIMMRQQNLPVIICFNKQDIATASEQQELHDAYEKCGYKVLFISVI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ GLD L + L+ +TT + GPSGVGKSSL+N L P+A
Sbjct: 145 EEKGLDELKELLKGKTTTLAGPSGVGKSSLLNKL--VPNAQ------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLL-------------------PLSGGG-----YLADTP 241
+ G++S K RGK+TTRH L G G Y+ DTP
Sbjct: 184 -MQTGDLSRKIERGKNTTRHSELFFVEELSDNVDRNVDINVDGSADGEGTTCDTYVIDTP 242
Query: 242 GFNQPSLLKVTKQSLAQTFPE 262
GF + VT +L Q +PE
Sbjct: 243 GFTSLEMRDVTPDNLMQFYPE 263
>gi|332981569|ref|YP_004463010.1| ribosome small subunit-dependent GTPase A [Mahella australiensis
50-1 BON]
gi|332699247|gb|AEE96188.1| ribosome small subunit-dependent GTPase A [Mahella australiensis
50-1 BON]
Length = 294
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 127/239 (53%), Gaps = 28/239 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K+ +VGD+V + +D D G+I+ + R + PPVANVD ++ + +
Sbjct: 26 CKARGKFRKLHIIPMVGDRVRIRVLD--DGTGIIDEIMPRRNALTRPPVANVDQMIAVIA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-GYEPLFCSV 144
+ QP+ L + ++ AE + + + +NK++L D V S+ + GY ++ SV
Sbjct: 84 VAQPEPNLLQLDKLILAAEKQQLDIVICINKIDLDDGMVQCKAISKAYEMAGYNVVYTSV 143
Query: 145 ESKL-GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
L G++ + + LR + TVI G SGVGKSS+INA+ +
Sbjct: 144 AEPLCGIEDVKRFLRGRITVIAGQSGVGKSSIINAICGQNRMA----------------- 186
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
VGE+S K+G GKHTTRHV LL + GG +ADTPGF+ L++TK +A + E
Sbjct: 187 -----VGEISAKAGLGKHTTRHVELLAVD-GGMIADTPGFSAFE-LRLTKYEVAAFYRE 238
>gi|312111722|ref|YP_003990038.1| ribosome small subunit-dependent GTPase A [Geobacillus sp. Y4.1MC1]
gi|311216823|gb|ADP75427.1| ribosome small subunit-dependent GTPase A [Geobacillus sp. Y4.1MC1]
Length = 293
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 125/240 (52%), Gaps = 28/240 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V+ + + G I + +R ++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKQKITPLVGDHVMFQATGEAE--GYIMEIRERKNWLIRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFLV ES I + +NK++LVD++ + + + GY+ +
Sbjct: 83 AVEPDFSAKLLDRFLVLTESKQIRPIVVVNKMDLVDDQTKPAIEQYIRDYRQVGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ +KLG++ LL L +V G SGVGKSSL+NAL D+
Sbjct: 143 SIVTKLGVERLLSCLEGHISVFAGQSGVGKSSLLNAL--------CPDL----------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ ++ST GRGKHTTRHV LL + GGG +ADTPGF+ L ++ L FPE
Sbjct: 184 ---QLKTNDISTHLGRGKHTTRHVELLEV-GGGLVADTPGFSALELDELEIDELPLYFPE 239
>gi|390934827|ref|YP_006392332.1| ribosome biogenesis GTPase RsgA [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570328|gb|AFK86733.1| ribosome biogenesis GTPase RsgA [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 291
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 119/227 (52%), Gaps = 34/227 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGD V V S ++ D G I N+ R +++ PPV+NVD ++ FS+ P L L +
Sbjct: 40 IVGDYVDVESQNFKD--GFIVNIHDRKNQLVRPPVSNVDQAIITFSIVNPDLNRLQLDKM 97
Query: 100 LVEAESTGIPLTLALNKVELVDEE----VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155
++ E I + +NKV+LVDE+ + N +K GYE + S +G+D L
Sbjct: 98 IILTEVNQINPIICINKVDLVDEDEYMPIYNIYKK----LGYEVIATSKYDNIGIDKLKT 153
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
L+ +T+ GPSGVGKSSLIN + E Q +G++S K
Sbjct: 154 ILKGKTSFFTGPSGVGKSSLINCVHGH----------------------ERQEIGDLSEK 191
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RGKHTTR+V L+ + GGY+ DTPGF + L + +++L + +
Sbjct: 192 LNRGKHTTRNVELISID-GGYVLDTPGFTSLN-LNIDEKNLKNFYKD 236
>gi|220928959|ref|YP_002505868.1| ribosome small subunit-dependent GTPase A [Clostridium
cellulolyticum H10]
gi|254766366|sp|B8I262.1|RSGA_CLOCE RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|219999287|gb|ACL75888.1| ribosome small subunit-dependent GTPase A [Clostridium
cellulolyticum H10]
Length = 305
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 23/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K L GD+V ID + G I+ + RS+E++ P VANVD + ++ +
Sbjct: 27 CKPRGVFRKNSVTPLPGDRVGFSIIDGDKKLGNIDEILPRSSELVRPAVANVDQIAIIVA 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L + L+ AE+ I + + +NK++L D++ ++ GY+ + S
Sbjct: 87 AKAPNPDYMLLDKLLITAETRNIRVLICVNKIDL-DDDTAKIVRNAYSPAGYDVIEISSV 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G L + L+ TV G SGVGKS+++N + +++W
Sbjct: 146 RNIGYKRLKEELKGHITVFAGQSGVGKSTILNHI-----------MESWV---------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K RGKHTTRH LL L GGY+ADTPGF+ ++ + L + +PE
Sbjct: 185 -METGSVSNKIERGKHTTRHAELLELKYGGYVADTPGFSSFEIIDIPYNQLERYYPE 240
>gi|452974518|gb|EME74338.1| GTPase RsgA [Bacillus sonorensis L12]
Length = 293
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 120/241 (49%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD VV + + D+ G + + +R E++ PP++NVD +L+FS
Sbjct: 25 CRGRGIFRKNKVTPLVGDDVVYQADN--DKEGYLLEIKERINELVRPPISNVDQAVLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC 142
+P L RFLV E+ I + + K++L + E+ + + GY
Sbjct: 83 AKEPNFSTSLLDRFLVLVEAKDIQPIICITKMDLAEGEIEDQIRRYAEDYRKIGYHVYLT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + G++ ++ +D TV G SGVGKSSL+NA+ SP
Sbjct: 143 STKHGSGIEEIIPHFKDSITVFAGQSGVGKSSLLNAI--SPDL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + +S GRGKHTTRHV L+ +GGG +ADTPGF+ + + L TF E
Sbjct: 184 ---ELKTAGISAYLGRGKHTTRHVELIH-TGGGLVADTPGFSSLEFTGIEAEDLGYTFLE 239
Query: 263 V 263
+
Sbjct: 240 I 240
>gi|258511309|ref|YP_003184743.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478035|gb|ACV58354.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 292
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + K VLVGD V + + G+I V R TE++ PP+ANVDH+++ S
Sbjct: 25 CRARGVFKVKGTTVLVGDFVRYEPVGA--QEGIIREVLPRRTELIRPPIANVDHVVVACS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P L + L + L++A G+ T+A K +LV E+ + GYE + + +
Sbjct: 83 FVTPDLSFYMLDKTLLQASVAGVEPTIAFTKADLVSPELASATVELYRRLGYEAVAVAAK 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G+ L RL+ + TV+ GPSG GKS+L NAL +P S
Sbjct: 143 QGEGVSVLRARLQGRVTVLAGPSGAGKSTLANAL--APGIS------------------- 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GEVS K GRG+ TTRHV L+ L ++AD PGF+Q + V + + FPE
Sbjct: 182 -FKTGEVSEKIGRGRQTTRHVELVRLDDATWMADAPGFSQLQ-VPVASREVRLHFPE 236
>gi|402815964|ref|ZP_10865556.1| putative ribosome biogenesis GTPase RsgA [Paenibacillus alvei DSM
29]
gi|402507004|gb|EJW17527.1| putative ribosome biogenesis GTPase RsgA [Paenibacillus alvei DSM
29]
Length = 305
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 119/250 (47%), Gaps = 34/250 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK LVGD+V D + G ++ + +R TE++ PP+ANV L+FS
Sbjct: 29 CRARGIFKKKGVSPLVGDRVTFSMTD--NGEGTVDQIEKRKTELIRPPIANVGLAALVFS 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLH-------TW 135
+ +P L L +FLV E G+ + L K +++D E V + +
Sbjct: 87 VAEPILNRQLLDKFLVHIEHAGLDAVIVLTKCDIIDGLPETVQQAARQEMEETIQLYSNI 146
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
GY+ + S G + +L +V G SGVGKSSL+NA+ P S +
Sbjct: 147 GYDVISTSARGGYGYGEVESKLNQDISVFAGQSGVGKSSLLNAML--PGVSLETN----- 199
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
++S + GRGKHTTRHV LL L GGY+ADTPGF+Q L++
Sbjct: 200 ---------------QISHRLGRGKHTTRHVELLALPRGGYIADTPGFSQLDFLELGVDQ 244
Query: 256 LAQTFPEVCA 265
L F E A
Sbjct: 245 LGDCFREFRA 254
>gi|403745322|ref|ZP_10954260.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
hesperidum URH17-3-68]
gi|403121550|gb|EJY55843.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
hesperidum URH17-3-68]
Length = 292
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 114/227 (50%), Gaps = 32/227 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK VLVGDKV+ I + G+I V R+TE++ PP+ANVDH+++ S
Sbjct: 25 CRARGVFKKRGTTVLVGDKVLYEPIG--NNEGVIGEVLPRTTELVRPPIANVDHVVVACS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHTWGYEPLF 141
P L + L + LV A G+ T+ L K +LV EE++ ++ GYE
Sbjct: 83 FVTPDLNLYMLDKTLVAAALAGVEPTVVLTKSDLVVSERAEEIVKLYRG----IGYETYA 138
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
+ + G+ + RL+ + +V GPSG GKS+L NAL H
Sbjct: 139 IAAKFGSGVAQIRARLKGRISVFAGPSGAGKSTLANALLPGLHL---------------- 182
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
+ GEVS K GRGK TTRHV L + ++AD PGF+Q L
Sbjct: 183 ------QTGEVSEKIGRGKQTTRHVELFQMDAESWVADAPGFSQLQL 223
>gi|218290482|ref|ZP_03494602.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
acidocaldarius LAA1]
gi|218239503|gb|EED06698.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
acidocaldarius LAA1]
Length = 291
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 118/237 (49%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + K VLVGD V + + G+I V R TE+L PP+ANVDH+++ S
Sbjct: 25 CRARGVFKVKGTTVLVGDFVRYEPVGA--QEGIIREVLPRRTELLRPPIANVDHVVIACS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P L + L + L++A G+ T+A K +LV E + GYE + + +
Sbjct: 83 FVTPDLSFYMLDKTLLQASVAGVEPTIAFTKADLVSLERASATVDMYRRLGYEAVAVAAK 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G+ L RL+ + TV+ GPSG GKS+L NAL +P S
Sbjct: 143 QGEGVSLLRARLQGRVTVLAGPSGAGKSTLANAL--APGIS------------------- 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GEVS K GRG+ TTRHV L+ L ++AD PGF+Q + V + + FPE
Sbjct: 182 -FKTGEVSEKIGRGRQTTRHVELVRLDDATWMADAPGFSQLQ-VPVASRDVRLHFPE 236
>gi|452992529|emb|CCQ96062.1| putative ribosome biogenesis GTPase RsgA [Clostridium ultunense
Esp]
Length = 292
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 128/239 (53%), Gaps = 24/239 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + ++ K L+GD V++ I D G IE + +R ++++ PPVANV +++ S
Sbjct: 25 CRARGVFREDKITPLIGDNVLI-RISEEDNTGYIEKIMERKSQLMRPPVANVTQAIIVMS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P + + L RF+V AE + + + +NK++L E+ + Y + S +
Sbjct: 84 IKKPDINYWLLDRFIVMAEHQNLNIGICINKIDLSLEDEIQQIDKIYGKTEYPIVKTSTK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
S G++ L + L+ TV GPSGVGKSSL+N + P L
Sbjct: 144 SGEGIEDLKKILKKNVTVFAGPSGVGKSSLLNRMH----------------PGL------ 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQTFPEV 263
+ ++G+VS K+ RGKHTTRHV L+ + ++ DTPGF+ +L + +++ L + F E+
Sbjct: 182 ELKIGDVSKKTTRGKHTTRHVELIDMDSQSFVLDTPGFSSLNLDFIESEEDLGRYFREI 240
>gi|123967555|ref|YP_001008413.1| GTPases [Prochlorococcus marinus str. AS9601]
gi|123197665|gb|ABM69306.1| Predicted GTPases [Prochlorococcus marinus str. AS9601]
Length = 305
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 23/227 (10%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+ LC V+ + + + VGD+V + ID +R +I ++ +R ++ P VAN+ ++ +
Sbjct: 34 KFLCKVKKSINFRDQLIYVGDEVAIEKIDLKGKRAVITSLKKRKNLLVRPSVANISNIYV 93
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
FS+++P+L + RFL+ AES G+ ++L L K +L+ ++ + + WGY+ +
Sbjct: 94 TFSVEEPELNLSQVNRFLISAESIGVEVSLVLTKCDLISDKRRSYLLDKFEKWGYQVITL 153
Query: 143 SVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
++++ +LL L+ + ++ +GPSGVGK++L+N + S A
Sbjct: 154 NLQNSDCFKNLLADLKQKECSIFMGPSGVGKTTLLNMIIPGLENSTAP------------ 201
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
VS K RGK+TTR+V L +S Y+ DTPGFN +L
Sbjct: 202 ----------VSNKIKRGKNTTRNVELFSISNQSYIVDTPGFNMQTL 238
>gi|160880617|ref|YP_001559585.1| ribosome small subunit-dependent GTPase A [Clostridium
phytofermentans ISDg]
gi|160429283|gb|ABX42846.1| ribosome small subunit-dependent GTPase A [Clostridium
phytofermentans ISDg]
Length = 291
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 119/240 (49%), Gaps = 23/240 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
E C + + + K + LVGD V V +D + G I ++ +R +E++ P VAN+D ++
Sbjct: 22 EYECKAKGIFRNRKIKPLVGDDVEVEILDKDSKTGNIVDILERKSELIRPAVANIDQAMI 81
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+F++ P L RFLV E GI + NK++ +EE + GY+ LF
Sbjct: 82 IFAVSDPAPNYNLLDRFLVMMEQQGIQTIICFNKMDKAEEEERKKVEEVYRNTGYQILFT 141
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + ++ + LR ++T + GPSGVGKSSL N L+S
Sbjct: 142 NALAG-DIEEVKAVLRGKSTALAGPSGVGKSSLTNRLQSKV------------------- 181
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G++S K RGKHTTRH L+ + YL DTPGF+ L + K+ L FPE
Sbjct: 182 ---SMQTGQISEKIKRGKHTTRHSELIYMEEHTYLLDTPGFSSLYLKDIEKEVLQTFFPE 238
>gi|423720637|ref|ZP_17694819.1| ribosome biogenesis GTPase rsgA [Geobacillus thermoglucosidans
TNO-09.020]
gi|383365990|gb|EID43281.1| ribosome biogenesis GTPase rsgA [Geobacillus thermoglucosidans
TNO-09.020]
Length = 293
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 124/240 (51%), Gaps = 28/240 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V+ + + G I + +R ++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKQKITPLVGDHVMFQATGEAE--GYIMEIRERKNWLIRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFLV ES I + +NK++LVD++ + + + GY+ +
Sbjct: 83 AVEPDFSAKLLDRFLVLTESKQIRPIVVVNKMDLVDDQTKPAIEQYIRDYRQVGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +KLG++ LL L +V G SGVGKSSL+NAL D+
Sbjct: 143 STVTKLGVERLLSCLEGHISVFAGQSGVGKSSLLNAL--------CPDL----------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ ++ST GRGKHTTRHV LL + GGG +ADTPGF+ L ++ L FPE
Sbjct: 184 ---QLKTNDISTHLGRGKHTTRHVELLEV-GGGLVADTPGFSALELDELEIDELPLYFPE 239
>gi|284047699|ref|YP_003398038.1| ribosome small subunit-dependent GTPase A [Acidaminococcus
fermentans DSM 20731]
gi|283951920|gb|ADB46723.1| ribosome small subunit-dependent GTPase A [Acidaminococcus
fermentans DSM 20731]
Length = 295
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 118/243 (48%), Gaps = 26/243 (10%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV C V+ +K+ + + GD+V ++ GMI V R + P VAN+D L
Sbjct: 23 GVLYTCKVKGRMKQKRFIMAAGDRV---ELEAQGAEGMIRQVLPRQNLLQRPLVANLDCL 79
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
+ +F+ P + + L AE+ GIP L LNK +L +++ ++S GY L
Sbjct: 80 MAVFACGDPDPSFLLVDKLLALAEAAGIPAALVLNKRDLAPAGLIDRFRSIYEPLGYPVL 139
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
LGL+ +L+R++ T GPSG GKS+L+N L +P L
Sbjct: 140 PVEAREGLGLEPILERVKGHTVAFGGPSGAGKSTLLNHL----------------DPSLT 183
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
K G VS+K GRG+HTTR LLP + GGY+ DTPGF L ++ A F
Sbjct: 184 LK------TGHVSSKIGRGRHTTRFAELLPFA-GGYIVDTPGFGNIDLSELQMDQAADGF 236
Query: 261 PEV 263
E+
Sbjct: 237 REI 239
>gi|20807942|ref|NP_623113.1| GTPase [Thermoanaerobacter tengcongensis MB4]
gi|38257677|sp|Q8R9T7.1|RSGA_THETN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|20516512|gb|AAM24717.1| predicted GTPases [Thermoanaerobacter tengcongensis MB4]
Length = 295
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V ++ ++ G I + R +++ PPVANVD +++F+
Sbjct: 27 CRARGKFRKDNIIPLVGDIAEVQLVN--EKEGYILEILPRKNQLVRPPVANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P++ L + +V AE I + +NKV++ E + + GY+ + S
Sbjct: 85 ISKPEINRVLLDKMIVVAEINKIEPVVCINKVDMEKREEVENLINVYRKIGYKAVGTSAV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G++ L L+D+ + GPSGVGKSSLIN ++S+
Sbjct: 145 TGEGMEELKSYLKDKISFFAGPSGVGKSSLINLIQSNIRL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GE+S K GRG+HTTR V LPL GGY+ DTPGF + + K+ L F E
Sbjct: 185 --KTGELSEKLGRGRHTTRSVEFLPLDFGGYVLDTPGFTALE-IDIPKEELRNYFRE 238
>gi|374296867|ref|YP_005047058.1| ribosome small subunit-dependent GTPase A [Clostridium clariflavum
DSM 19732]
gi|359826361|gb|AEV69134.1| ribosome small subunit-dependent GTPase A [Clostridium clariflavum
DSM 19732]
Length = 295
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K L GDKV + I+ ++ G IE +F R ++++ P VANV+ + ++ +
Sbjct: 25 CKARGIFRKDSLTPLPGDKVSISIINEENKTGSIEEIFPRESQLIRPAVANVNQIAIVIA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P+ + L + L+ E GI + +NK++L ++ + Y+ + S
Sbjct: 85 VKSPQPDFTLLDKLLISTEQKGIGAIICINKIDLDEKAEYTSIIQAYEKSMYKVIALSAV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G D + LRD+TTV G SGVGKSS++N + +S
Sbjct: 145 TGTGFDEIELALRDKTTVFAGQSGVGKSSILNKILNSYV--------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ G VS + RG+HTTRH L+ L GG++ DTPGF+ + + L +PE
Sbjct: 184 -MKTGSVSDRIERGRHTTRHAELIELKSGGFVVDTPGFSSFEISGIEADELQNFYPE 239
>gi|424779929|ref|ZP_18206815.1| Ribosome small subunit-stimulated GTPase EngC [Catellicoccus
marimammalium M35/04/3]
gi|422843468|gb|EKU27905.1| Ribosome small subunit-stimulated GTPase EngC [Catellicoccus
marimammalium M35/04/3]
Length = 297
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 123/243 (50%), Gaps = 31/243 (12%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K LVGD V S VD GMI ++ R++E+ P VANV ++++ S+
Sbjct: 26 ARGNFRKKGESPLVGDWVEFESTSEVD--GMITKIYPRTSELKRPHVANVSQVIIVMSVK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFCSV 144
P P L RFLV+AES G+ L +K++L+ + E + +K + GY LF
Sbjct: 84 DPNFSPLLLDRFLVQAESLGMKTILYWSKIDLLTTEEREAIENYKEQYMALGYPVLFG-- 141
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
E + L L+D+ TV++G SGVGKS+L+NAL P
Sbjct: 142 EEGIVNPELFSYLKDELTVLMGQSGVGKSTLLNALH--PEGK------------------ 181
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
+ +GEVS GRG+HTTRH L + G++ DTPGF+ L+V LAQ F E
Sbjct: 182 --REIGEVSQALGRGRHTTRHTELWSIH-DGWIVDTPGFSSLD-LEVDATELAQCFVEYR 237
Query: 265 AVG 267
A+
Sbjct: 238 ALA 240
>gi|433655115|ref|YP_007298823.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293304|gb|AGB19126.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 291
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 25/209 (11%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGD V + + + D G I N+ R E++ PPV+NVD ++ FS+ P L L +
Sbjct: 40 IVGDNVDIDTENLKD--GFIINIHNRKNELVRPPVSNVDQAIITFSIVNPALNRLQLDKM 97
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
++ E GI + +NK++LV E+V + GY+ + S +G+D L L
Sbjct: 98 IILVELNGIHPVICINKIDLVTEDVFTPLYNLYKNLGYDVIATSKFDNIGIDKLKAMLIG 157
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+T+ GPSGVGKSSLIN ++ + Q +G++S K RG
Sbjct: 158 KTSFFTGPSGVGKSSLINCIQGT----------------------NKQEIGDLSEKLLRG 195
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
KHTTR+V L+P GY+ DTPGF +L
Sbjct: 196 KHTTRNVELIPFE-NGYVLDTPGFTSLNL 223
>gi|336236096|ref|YP_004588712.1| ribosome biogenesis GTPase RsgA [Geobacillus thermoglucosidasius
C56-YS93]
gi|335362951|gb|AEH48631.1| ribosome biogenesis GTPase RsgA [Geobacillus thermoglucosidasius
C56-YS93]
Length = 293
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 123/240 (51%), Gaps = 28/240 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V+ + + G I + +R ++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKQKITPLVGDHVMFQATGEAE--GYIMEIRERKNWLIRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFLV ES I + +NK++LVD++ + + + GY+ +
Sbjct: 83 AVEPDFSAKLLDRFLVLTESKQIRPIVVVNKMDLVDDQTKPAIEQYIRDYRQVGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +KLG++ L L +V G SGVGKSSL+NAL D+
Sbjct: 143 STVTKLGVERLFSCLEGHISVFAGQSGVGKSSLLNAL--------CPDL----------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ ++ST GRGKHTTRHV LL + GGG +ADTPGF+ L ++ L FPE
Sbjct: 184 ---QLKTNDISTHLGRGKHTTRHVELLEV-GGGLVADTPGFSALELDELEIDELPLYFPE 239
>gi|153939662|ref|YP_001391799.1| ribosome-associated GTPase [Clostridium botulinum F str. Langeland]
gi|170754729|ref|YP_001782046.1| ribosome-associated GTPase [Clostridium botulinum B1 str. Okra]
gi|384462808|ref|YP_005675403.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum F
str. 230613]
gi|429245938|ref|ZP_19209305.1| GTPase RsgA [Clostridium botulinum CFSAN001628]
gi|254766363|sp|B1IIL4.1|RSGA_CLOBK RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|254766364|sp|A7GG89.1|RSGA_CLOBL RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|152935558|gb|ABS41056.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum F
str. Langeland]
gi|169119941|gb|ACA43777.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum B1
str. Okra]
gi|295319825|gb|ADG00203.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum F
str. 230613]
gi|428757028|gb|EKX79533.1| GTPase RsgA [Clostridium botulinum CFSAN001628]
Length = 292
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E S + GY+ +F + E
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAE 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 KERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPE 237
>gi|435853630|ref|YP_007314949.1| ribosome small subunit-dependent GTPase A [Halobacteroides halobius
DSM 5150]
gi|433670041|gb|AGB40856.1| ribosome small subunit-dependent GTPase A [Halobacteroides halobius
DSM 5150]
Length = 296
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 119/236 (50%), Gaps = 24/236 (10%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
+R LK+ V+ GDKV ++ D G++E R + PP+ANV+ +++ S+
Sbjct: 29 IRGRLKQRDVEVIAGDKVKFAILN--DGSGIVEERLPRENSLFRPPIANVEQVVITVSIS 86
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147
P L L R L+ + + + + +NK++LV + GY L+ S E +
Sbjct: 87 NPDLHFKLLDRLLILGRAADLEIVICVNKIDLVGIKKARKIMEYYKEIGYNILYTSAEEE 146
Query: 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
+ L L + L+D+ +V GPSGVGKSSL+NA+ +P L
Sbjct: 147 INLGQLEEVLQDKISVFAGPSGVGKSSLLNAI----------------QPDL------KL 184
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
R G+VS K RG+HTTR V LL L GG++ADTPGF+ + + + L F E+
Sbjct: 185 RTGKVSDKIKRGRHTTRKVELLSLDRGGWVADTPGFSALDITFIRSRELHYFFVEM 240
>gi|407977634|ref|ZP_11158471.1| GTPase RsgA [Bacillus sp. HYC-10]
gi|407415887|gb|EKF37468.1| GTPase RsgA [Bacillus sp. HYC-10]
Length = 298
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 126/253 (49%), Gaps = 29/253 (11%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ++++G + C R + +K K LVGD VV + + D+ G + V +R+ E++ PP+
Sbjct: 18 DESEESGKVIQCRARGIFRKNKITPLVGDYVVYQADN--DKEGYLLEVKERTNELVRPPI 75
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKS 130
+NVD +L+FS +P L RFLV E+ I + + K++L+ + E + +
Sbjct: 76 SNVDQAVLVFSAAEPTFSTSLLDRFLVLVEANHIKPLICITKIDLLKTEQEREAIQAYAE 135
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY+ S K G++ L ++ TV G SGVGKSSL+NA+
Sbjct: 136 DYRQIGYDVHLTSTIEKDGIEQLTPHFYNKITVFAGQSGVGKSSLLNAM----------- 184
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
P L K ++S+ GRGKHTTRHV L+ + G +ADTPGF+
Sbjct: 185 -----SPDLALK------TNDISSHLGRGKHTTRHVELIR-TAEGLIADTPGFSSLEFTG 232
Query: 251 VTKQSLAQTFPEV 263
+ + L F E+
Sbjct: 233 IEAEDLGLYFLEI 245
>gi|326203173|ref|ZP_08193039.1| ribosome small subunit-dependent GTPase A [Clostridium
papyrosolvens DSM 2782]
gi|325986819|gb|EGD47649.1| ribosome small subunit-dependent GTPase A [Clostridium
papyrosolvens DSM 2782]
Length = 305
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 116/237 (48%), Gaps = 23/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K L GD+V ID + G ++ + R +E++ P +ANVD + ++ +
Sbjct: 27 CKPRGVFRKNSVTPLPGDRVGFSIIDEAKKLGNVDEILPRMSELVRPAIANVDQIAIVVA 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L + L+ +E I + + +NK++L D+ T ++ GYE + S
Sbjct: 87 AKAPNPDYMLLDKLLITSEMKKIRVIICINKIDL-DDGTAKTIRNAYSLAGYEVVEISSV 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G L + L++ TV G SGVGKS+++N + +D+W
Sbjct: 146 RNVGYKLLKEELKEHITVFAGQSGVGKSTILNHI-----------MDSWV---------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K RGKHTTRH LL L GGY+ADTPGF+ + + L +PE
Sbjct: 185 -METGSVSNKIERGKHTTRHAELLELKYGGYVADTPGFSSFEITDIPYNELESYYPE 240
>gi|332653338|ref|ZP_08419083.1| ribosome small subunit-dependent GTPase A [Ruminococcaceae
bacterium D16]
gi|332518484|gb|EGJ48087.1| ribosome small subunit-dependent GTPase A [Ruminococcaceae
bacterium D16]
Length = 294
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 123/249 (49%), Gaps = 30/249 (12%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+D +G C R L+ K LVGD+V +D + +G ++ + R + P VAN
Sbjct: 17 DDGSGTITACRGRGKLRHEKITPLVGDRVEFTPLD--NGQGALDAILPRKNQFARPAVAN 74
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
+D L+++ S P +PF + R + AE + +NK +L L R G
Sbjct: 75 IDQLVIIASQSIPVTDPFLIDRVIAIAEGNHCESIVCVNKCDLASGAELAALYRR---AG 131
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+ L S E+ G+D L + + + + G SGVGKSS++NAL E
Sbjct: 132 YQALEVSAETGEGIDQLKELISGKVSAFTGNSGVGKSSILNAL----------------E 175
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT---K 253
P + K GEVS K GRG+HTTRHV L+ LS GG +ADTPGF+ + K+ K
Sbjct: 176 PGIALK------TGEVSDKLGRGRHTTRHVELVRLSCGGVVADTPGFSSFDVDKMELCRK 229
Query: 254 QSLAQTFPE 262
+ LA F E
Sbjct: 230 EELAGRFRE 238
>gi|429737554|ref|ZP_19271412.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. oral
taxon 138 str. F0429]
gi|429152360|gb|EKX95190.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. oral
taxon 138 str. F0429]
Length = 291
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 126/245 (51%), Gaps = 35/245 (14%)
Query: 24 LLCVVRALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+LC +R +KK + + + GD V + I + G+IE + R+ + P VAN+ ++
Sbjct: 25 ILCKLRGRVKKGRSELTPVPGDIVSLERISSDE--GVIERIEARTNLLQRPRVANLTQIV 82
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVD---EEVLNTWKSRLHTWGY 137
+ + P P ++RFLV AE +GI + L +NK++L E+VL +++ GY
Sbjct: 83 VTVAAALPDPHPLVVSRFLVLAERSGIKKIALCVNKMDLCQGTPEDVLAAYEA----AGY 138
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
L S E GL L +RL + TV GPSG GKSSL+NAL +P
Sbjct: 139 PVLRVSAEQGTGLRELHERLAGEITVFAGPSGAGKSSLLNAL----------------DP 182
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
L G VS K GRG+HTTR LLP + GGY+ DTPGF Q L ++ + L
Sbjct: 183 SLA------LLTGVVSEKIGRGRHTTRRAELLPFA-GGYVVDTPGFTQQELTEIAPEELV 235
Query: 258 QTFPE 262
FPE
Sbjct: 236 ACFPE 240
>gi|429728022|ref|ZP_19262767.1| ribosome small subunit-dependent GTPase A [Peptostreptococcus
anaerobius VPI 4330]
gi|429150694|gb|EKX93591.1| ribosome small subunit-dependent GTPase A [Peptostreptococcus
anaerobius VPI 4330]
Length = 268
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 122/238 (51%), Gaps = 23/238 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K LVGD+VV+ +D ++G+I+ + R + ++ PP+AN+D +L+ FS
Sbjct: 31 CKARGIFRKKNMAPLVGDRVVLSILDEEGKKGIIDEILPRKSYLVRPPIANIDKVLITFS 90
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL-NTWKSRLHTWGYEPLFCSV 144
+ +P L RF++ AE + + + L K +L ++ ++ N K + GY +
Sbjct: 91 VKEPVPNLSLLDRFIILAEREELEIVILLTKTDLDEDRLISNQIKEEFESIGYPVIDVCA 150
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ +D +++ + +V G SGVGKSS++NA +D F
Sbjct: 151 RTGENIDRVIEEMEGCVSVFAGQSGVGKSSILNA------------IDPEF--------- 189
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + E+S K GRGKHTTRH L + +ADTPGF+ + ++ + L + F E
Sbjct: 190 -NLKTAEISQKLGRGKHTTRHAELYKIGKNAVVADTPGFSSFDVNELDPEELREYFVE 246
>gi|289422329|ref|ZP_06424179.1| ribosome small subunit-dependent GTPase A [Peptostreptococcus
anaerobius 653-L]
gi|289157274|gb|EFD05889.1| ribosome small subunit-dependent GTPase A [Peptostreptococcus
anaerobius 653-L]
Length = 297
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 122/238 (51%), Gaps = 23/238 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K LVGD+VV+ +D ++G+I+ + R + ++ PP+AN+D +L+ FS
Sbjct: 25 CKARGIFRKKNMAPLVGDRVVLSILDEEGKKGIIDEILPRKSYLVRPPIANIDKVLITFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL-NTWKSRLHTWGYEPLFCSV 144
+ +P L RF++ AE + + + L K +L ++ ++ N K + GY +
Sbjct: 85 VKEPVPNLSLLDRFIILAEREELEIVILLTKTDLDEDRLISNQIKEEFESIGYPVIDVCA 144
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ +D +++ + +V G SGVGKSS++NA +D F
Sbjct: 145 RTGENIDRVIEEMEGCVSVFAGQSGVGKSSILNA------------IDPEF--------- 183
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + E+S K GRGKHTTRH L + +ADTPGF+ + ++ + L + F E
Sbjct: 184 -NLKTAEISQKLGRGKHTTRHAELYKIGKNAVVADTPGFSSFDVNELDPEELREYFVE 240
>gi|56964079|ref|YP_175810.1| ribosome-associated GTPase [Bacillus clausii KSM-K16]
gi|81365956|sp|Q5WFL1.1|RSGA_BACSK RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|56910322|dbj|BAD64849.1| GTPase [Bacillus clausii KSM-K16]
Length = 293
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 121/249 (48%), Gaps = 28/249 (11%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G + C R + +K K+ LVGD V + + D G + + +R ++ PP+ANVD
Sbjct: 20 GALIQCRGRGVFRKRKQTPLVGDYVEFEAENETD--GYVMAIKERKNQLNRPPIANVDQA 77
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGY 137
+L+FS +P L RFLV E I L ++K +L+ + + L + GY
Sbjct: 78 ILVFSAKEPDFHTLLLDRFLVHIEQHDIKPVLIISKTDLLEASERDALTRQVAMYEQIGY 137
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
L+ S + LL L +Q +VI G SGVGKSSL+NAL +P A +
Sbjct: 138 PVLYTSTKQADDPSELLPLLANQVSVIAGQSGVGKSSLLNAL--APEAKIETN------- 188
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
E+S GRG+HTTRH LLP+ G G +ADTPGF+ + + L
Sbjct: 189 -------------EISRHLGRGRHTTRHTELLPI-GEGLVADTPGFSSLEFTDMEAEDLR 234
Query: 258 QTFPEVCAV 266
FPE ++
Sbjct: 235 FCFPEFLSL 243
>gi|392957480|ref|ZP_10323003.1| GTPase RsgA [Bacillus macauensis ZFHKF-1]
gi|391876443|gb|EIT85040.1| GTPase RsgA [Bacillus macauensis ZFHKF-1]
Length = 296
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 121/242 (50%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K K LVGD V S D G I ++ +R E+ PP++NVD +L+FS
Sbjct: 27 CRGRGNFRKKKITPLVGDWVQYESTSPTD--GYILDIKERKNELNRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT----WKSRLHTWGYEPLF 141
+P L RFLV E+ GI + + K++LV +E T + GYE +
Sbjct: 85 AVRPTFSTTLLDRFLVHIEANGITPVICITKMDLVQDEKQQTEMLSYIEDYQRLGYEVIA 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S +S G++ + +++T+V G SGVGKSSL+NAL P L
Sbjct: 145 TSAKSLEGMNEIKPVFKERTSVFAGQSGVGKSSLLNALM----------------PDLKL 188
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ ++S GRGKHTTRHV LLP G +ADTPGF+ + + + L+ FP
Sbjct: 189 E------TNDISDHLGRGKHTTRHVELLPFE-EGLVADTPGFSSLDFVDIEIEELSFYFP 241
Query: 262 EV 263
E+
Sbjct: 242 EM 243
>gi|163783506|ref|ZP_02178497.1| hypothetical protein HG1285_08834 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881270|gb|EDP74783.1| hypothetical protein HG1285_08834 [Hydrogenivirga sp. 128-5-R1-1]
Length = 295
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 29/231 (12%)
Query: 36 KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFA 95
K ++ GD+VV +D IE++ +R ++ PPVANVD ++ + ++ +P + +
Sbjct: 36 KTKIYAGDRVVGNVVDG--ETFAIEDIERRKNVLIRPPVANVDRVICVMTLRRPDFDNYL 93
Query: 96 LTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDS 152
L LV + G + NK++L+ D E LN W + YE + S E+ GLD
Sbjct: 94 LDSLLVVYDHVGCEPVIVFNKIDLLTARDREELNRWSDIYTSANYEVVHVSAETGEGLDR 153
Query: 153 LLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212
+++ +R + ++ GPSG GKSS++ L E+ R GEV
Sbjct: 154 IVELVRGEICILAGPSGAGKSSILKRLTG-----------------------EELRTGEV 190
Query: 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQSLAQTFPE 262
S K+ RG+HTT V L+PL G ++ D+PGF++ L+ V K+ + F E
Sbjct: 191 SEKTERGRHTTTGVKLIPLGNGAFIGDSPGFSRVEALQFVRKREVKNYFRE 241
>gi|304316968|ref|YP_003852113.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778470|gb|ADL69029.1| ribosome small subunit-dependent GTPase A [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 291
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 108/209 (51%), Gaps = 25/209 (11%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGD V + + + D G I N+ R E++ PPV+NVD ++ FS+ P L L +
Sbjct: 40 IVGDNVDIDTENLKD--GFIINIHNRKNELVRPPVSNVDQAIITFSIVNPALNRLQLDKM 97
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
++ E GI + +NK++LV E+V + GY+ + S +G+D L +
Sbjct: 98 IILVELNGIHPVICINKIDLVTEDVFAPLYNLYKNLGYDVIATSKFDNIGIDKLKAMIIG 157
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+T+ GPSGVGKSSLIN ++ + Q +G++S K RG
Sbjct: 158 KTSFFTGPSGVGKSSLINCIQGT----------------------NKQEIGDLSEKLLRG 195
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
KHTTR+V L+P GY+ DTPGF +L
Sbjct: 196 KHTTRNVELIPFE-NGYVLDTPGFTSLNL 223
>gi|358467882|ref|ZP_09177547.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp. oral
taxon 370 str. F0437]
gi|357066556|gb|EHI76705.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp. oral
taxon 370 str. F0437]
Length = 267
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 130/255 (50%), Gaps = 34/255 (13%)
Query: 28 VRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
+R +LKK K +VGD+V + + ++E +F+R ++ P VANVD+L + F+
Sbjct: 1 MRGILKKTNNKYNCVVGDRVEIS-----EDNSIVE-IFKRDNMLIRPIVANVDYLAIQFA 54
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL---HTWGYEPLFC 142
P ++ + L+ A + + +NK++ + EE L K RL + G
Sbjct: 55 AKHPNIDYERINLLLLTAFYYKVKPLVIINKIDYLSEEELTELKERLAHLKSIGVPSFLI 114
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +GL + L+D+TTVI GPSGVGKSSLIN L+S E IL
Sbjct: 115 SCQENVGLQEVEDFLKDKTTVIGGPSGVGKSSLINFLQS--------------ERIL--- 157
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQTFP 261
+ GE+S + RGKHTTR +++ + GGY+ DTPGF+ + K+ ++ L FP
Sbjct: 158 -----KTGEISERLQRGKHTTRDSNMIRMKAGGYIIDTPGFSSIEIPKIENREELISLFP 212
Query: 262 EVCAVGLLYMIHMLH 276
E + ++ H
Sbjct: 213 EFTNIDSCKFLNCSH 227
>gi|111074983|gb|ABH04841.1| GTPase EngC [Heliobacillus mobilis]
Length = 273
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 118/232 (50%), Gaps = 24/232 (10%)
Query: 32 LKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKL 91
LK+ R L GD+V + I D+ G+IE+V+ R TE+L PP+ANVD +LL+F++ P
Sbjct: 7 LKENNRVFLPGDRVRI-RIREGDK-GVIEDVYPRRTELLRPPIANVDQVLLVFALANPDP 64
Query: 92 EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLD 151
+ L R L+ A G+ + K +L +++ +P S + L+
Sbjct: 65 DFVLLDRLLILASQGGVEPVIVFTKADLAHPQMIEKINELYSAIDVKPFVVSSKQPDTLE 124
Query: 152 SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211
+ L + +V+ GPSG GKS+L+N L SP S + G+
Sbjct: 125 PVRSLLDGKISVVAGPSGAGKSTLLNGL--SPGLS--------------------LKTGD 162
Query: 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
VS+K GRG+HTTRHV LL L G +ADTPGF+ L + L FPE+
Sbjct: 163 VSSKIGRGRHTTRHVELLVLPTGALIADTPGFSTLFLPDIPAYELGSYFPEM 214
>gi|334134838|ref|ZP_08508340.1| ribosome small subunit-dependent GTPase A-like protein
[Paenibacillus sp. HGF7]
gi|333607682|gb|EGL18994.1| ribosome small subunit-dependent GTPase A-like protein
[Paenibacillus sp. HGF7]
Length = 333
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 129/273 (47%), Gaps = 60/273 (21%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + KK LVGD++ + + + G + + R++E++ PP+ANVD +L+FS
Sbjct: 31 CRARGVFKKRGISPLVGDRIKYEATE--NGEGTVTEIDPRTSEMIRPPIANVDTAMLVFS 88
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSR-------------- 131
+ +P L L +FLV E+TG+ + L K +LVD ++ KS
Sbjct: 89 VVEPDLNLQLLDKFLVHIENTGLHAAICLTKADLVDLADDSSEKSAAESAEEGEAVQLTA 148
Query: 132 -----------LHTW-----------GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSG 169
+ W GY + S G+D + + L + +V G SG
Sbjct: 149 SSASAGLVAPPMPGWLTDAVELYRKIGYPVMLTSSRQGEGVDQVAEYLDGKISVFAGQSG 208
Query: 170 VGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229
VGKSS++NA+ + D + E+S + GRGKHTTRHV L+
Sbjct: 209 VGKSSMLNAIVAGL----------------------DLQTNEISHRLGRGKHTTRHVELI 246
Query: 230 PLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
PL+ GGY+ADTPGF+Q +++ + L F E
Sbjct: 247 PLAKGGYVADTPGFSQLDFVELEAEDLGSCFRE 279
>gi|335047550|ref|ZP_08540571.1| ribosome small subunit-dependent GTPase A [Parvimonas sp. oral
taxon 110 str. F0139]
gi|333761358|gb|EGL38913.1| ribosome small subunit-dependent GTPase A [Parvimonas sp. oral
taxon 110 str. F0139]
Length = 291
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 117/233 (50%), Gaps = 28/233 (12%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
KTG + R + +K K +VGD V + + D I VF R EIL PPV NVD
Sbjct: 20 KTG-RYMSKARGVFRKQKFTPMVGDNVKIEI--FADNTACIVEVFDRKNEILRPPVVNVD 76
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
+++FS+ P++ + R+++ E IP+ L LNK +L+D+E +++ GY+
Sbjct: 77 QAIIVFSLKDPEISYKIIDRYIMYYEVMKIPIILCLNKCDLIDKETEINFRNIYDKLGYK 136
Query: 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+F S+ L L + + +D+ +VI G SGVGKS+++N L D + W
Sbjct: 137 IIFNSIS--LDNRKLFEEICKDKISVITGASGVGKSTILNFLN--------PDYNIW--- 183
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
VG++S K+ RGKHTTR +L ++ DT GF L K
Sbjct: 184 -----------VGDISNKTKRGKHTTRAATLYEFFDNSFIIDTAGFTSLDLTK 225
>gi|262066608|ref|ZP_06026220.1| ribosome small subunit-dependent GTPase A [Fusobacterium
periodonticum ATCC 33693]
gi|291379672|gb|EFE87190.1| ribosome small subunit-dependent GTPase A [Fusobacterium
periodonticum ATCC 33693]
Length = 267
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 130/255 (50%), Gaps = 34/255 (13%)
Query: 28 VRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
+R +LKK K +VGD+V + + ++E +FQR ++ P VANVD+L + F+
Sbjct: 1 MRGILKKTNNKYNCVVGDRVEIS-----EDNSIVE-IFQRDNMLIRPIVANVDYLAIQFA 54
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL---HTWGYEPLFC 142
P ++ + L+ A + + +NK++ + EE L K RL + G
Sbjct: 55 AKHPNIDYERINLLLLTAFYYKVKPLVIVNKIDYLSEEELTELKERLAHLKSIGVPSFLI 114
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +GL + L+D+TTVI GPSGVGKSSLIN L+S E +L
Sbjct: 115 SCQDNVGLQEVEDFLKDKTTVIGGPSGVGKSSLINFLQS--------------ERVL--- 157
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQTFP 261
+ GE+S + RGKHTTR +++ + GGY+ DTPGF+ + K+ ++ L FP
Sbjct: 158 -----KTGEISERLQRGKHTTRDSNMIRMKAGGYIIDTPGFSSIEVPKIENREELISLFP 212
Query: 262 EVCAVGLLYMIHMLH 276
E + ++ H
Sbjct: 213 EFTNIESCKFLNCSH 227
>gi|401564492|ref|ZP_10805382.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. FOBRC6]
gi|400188776|gb|EJO22915.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. FOBRC6]
Length = 291
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 126/248 (50%), Gaps = 35/248 (14%)
Query: 21 GVELLCVVRALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
G +LC +R +KK + + + GD V + I + G+IE + R+ + P VAN+
Sbjct: 22 GRVILCKLRGRVKKGRSDLTPVPGDIVSLERITAEE--GVIERIEARANLLQRPRVANLT 79
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVEL---VDEEVLNTWKSRLHT 134
+++ + P P ++RFLV AE +G+ + L +NK++L E+ L +++
Sbjct: 80 QIVVTVAAVAPDPHPLVVSRFLVLAECSGVKKIVLCVNKMDLYAGAPEDALAPYEA---- 135
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY L S E GLD L RL + TV GPSG GKSSL+NAL
Sbjct: 136 AGYPVLRVSAEQGTGLDELRGRLAGEITVFAGPSGAGKSSLLNAL--------------- 180
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
+P L G VS K GRG+HTTR L+P + GGY+ DTPGF Q L + +
Sbjct: 181 -DPSLA------LLTGAVSEKIGRGRHTTRRAELIPFA-GGYVVDTPGFTQQELTDLAPE 232
Query: 255 SLAQTFPE 262
LA FPE
Sbjct: 233 ELAACFPE 240
>gi|168182580|ref|ZP_02617244.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum
Bf]
gi|237795942|ref|YP_002863494.1| ribosome-associated GTPase [Clostridium botulinum Ba4 str. 657]
gi|259495471|sp|C3L0K4.1|RSGA_CLOB6 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|182674188|gb|EDT86149.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum
Bf]
gi|229263105|gb|ACQ54138.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum
Ba4 str. 657]
Length = 292
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 120/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + + NK++LV++E S + GY+ +F + +
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKVIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 EERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLYCIPE 237
>gi|294783162|ref|ZP_06748486.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
1_1_41FAA]
gi|294480040|gb|EFG27817.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
1_1_41FAA]
Length = 267
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 130/255 (50%), Gaps = 34/255 (13%)
Query: 28 VRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
+R +LKK K +VGD+V + + ++E +F+R ++ P VANVD+L + F+
Sbjct: 1 MRGILKKTNNKYNCVVGDRVEIS-----EDNAIVE-IFERENMLIRPIVANVDYLAIQFA 54
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL---HTWGYEPLFC 142
P ++ + L+ A + + +NK++ + EE L K RL + G
Sbjct: 55 AKHPNIDYERINLLLLTAFYYKVKPLVIVNKIDYLSEEELTELKERLAHLKSIGVPTFLI 114
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +GL + L+D+TTVI GPSGVGKSSLIN L+S E +L
Sbjct: 115 SCQENIGLQEVEDFLKDKTTVIGGPSGVGKSSLINFLQS--------------ERVL--- 157
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQTFP 261
+ GE+S + RGKHTTR +++ + GGY+ DTPGF+ + K+ ++ L FP
Sbjct: 158 -----KTGEISERLQRGKHTTRDSNMIRMKAGGYIIDTPGFSSIEVPKIENREELISLFP 212
Query: 262 EVCAVGLLYMIHMLH 276
E + ++ H
Sbjct: 213 EFTNIDSCKFLNCSH 227
>gi|340753764|ref|ZP_08690538.1| ribosome biogenesis GTPase RsgA [Fusobacterium sp. 2_1_31]
gi|422317087|ref|ZP_16398454.1| putative ribosome biogenesis GTPase RsgA [Fusobacterium
periodonticum D10]
gi|229423318|gb|EEO38365.1| ribosome biogenesis GTPase RsgA [Fusobacterium sp. 2_1_31]
gi|404590239|gb|EKA92693.1| putative ribosome biogenesis GTPase RsgA [Fusobacterium
periodonticum D10]
Length = 267
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 130/255 (50%), Gaps = 34/255 (13%)
Query: 28 VRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
+R +LKK K +VGD+V + + ++E +F+R ++ P VANVD+L + F+
Sbjct: 1 MRGILKKTNNKYNCVVGDRVEIS-----EDNAIVE-IFERDNMLIRPIVANVDYLAIQFA 54
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL---HTWGYEPLFC 142
P ++ + L+ A + + +NK++ + EE L K RL + G
Sbjct: 55 AKHPNIDYERINLLLLTAFYYKVKPLVIINKIDYLSEEELTELKERLAHLKSIGVPTFLI 114
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +GL + L+D+TTVI GPSGVGKSSLIN L+S E +L
Sbjct: 115 SCQENVGLQEVEDFLKDKTTVIGGPSGVGKSSLINFLQS--------------ERVL--- 157
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQTFP 261
+ GE+S + RGKHTTR +++ + GGY+ DTPGF+ + K+ ++ L FP
Sbjct: 158 -----KTGEISERLQRGKHTTRDSNMIRMKAGGYIIDTPGFSSIEVPKIENREELISLFP 212
Query: 262 EVCAVGLLYMIHMLH 276
E + ++ H
Sbjct: 213 EFSNIDSCKFLNCSH 227
>gi|23098965|ref|NP_692431.1| ribosome-associated GTPase [Oceanobacillus iheyensis HTE831]
gi|38257605|sp|Q8ER21.1|RSGA2_OCEIH RecName: Full=Putative ribosome biogenesis GTPase RsgA 2
gi|22777193|dbj|BAC13466.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 293
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 118/246 (47%), Gaps = 28/246 (11%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+ +C R L + K LVGD V D D G I + +RS E++ PP+AN+D ++
Sbjct: 22 QFVCKGRGLFRNKKITPLVGDYVEFEPKD--DNEGYIMEIKERSNELVRPPIANIDQAII 79
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT---WKSRLHTWGYEP 139
+ S P L RFLV ES I + + KV+L++E+ L +K GY
Sbjct: 80 VSSAVDPDFTTLLLDRFLVLIESKHIQPIILITKVDLLNEDQLENIKLYKQHYEKIGYRV 139
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S +++ L L ++ +V G SGVGKSSLIN L S A
Sbjct: 140 ELVSSKNQDLLPELEPYFDEKVSVFAGQSGVGKSSLINVLDPSLLLETA----------- 188
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
E+S GRGKHTTRHV L+ + G G +ADTPGF+ ++ + LA +
Sbjct: 189 -----------EISKSLGRGKHTTRHVELMKI-GNGLVADTPGFSVLEFREIEAEELADS 236
Query: 260 FPEVCA 265
FPE A
Sbjct: 237 FPEFNA 242
>gi|168180614|ref|ZP_02615278.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum
NCTC 2916]
gi|226949856|ref|YP_002804947.1| ribosome-associated GTPase [Clostridium botulinum A2 str. Kyoto]
gi|387818726|ref|YP_005679073.1| ribosome small subunit-stimulated GTPase EngC [Clostridium
botulinum H04402 065]
gi|421836150|ref|ZP_16270715.1| GTPase RsgA [Clostridium botulinum CFSAN001627]
gi|254766362|sp|C1FSS3.1|RSGA_CLOBJ RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|182668535|gb|EDT80514.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum
NCTC 2916]
gi|226843103|gb|ACO85769.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum A2
str. Kyoto]
gi|322806770|emb|CBZ04339.1| ribosome small subunit-stimulated GTPase EngC [Clostridium
botulinum H04402 065]
gi|409742031|gb|EKN41588.1| GTPase RsgA [Clostridium botulinum CFSAN001627]
Length = 292
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E S + GY+ +F + +
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 EERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPE 237
>gi|148380457|ref|YP_001254998.1| ribosome-associated GTPase [Clostridium botulinum A str. ATCC 3502]
gi|153933437|ref|YP_001384680.1| ribosome-associated GTPase [Clostridium botulinum A str. ATCC
19397]
gi|153937033|ref|YP_001388201.1| ribosome-associated GTPase [Clostridium botulinum A str. Hall]
gi|254766357|sp|A7FW69.1|RSGA_CLOB1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|254766361|sp|A5I4T1.1|RSGA_CLOBH RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|148289941|emb|CAL84054.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152929481|gb|ABS34981.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum A
str. ATCC 19397]
gi|152932947|gb|ABS38446.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum A
str. Hall]
Length = 292
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E S + GY+ +F + +
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 EERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPE 237
>gi|167747877|ref|ZP_02420004.1| hypothetical protein ANACAC_02606 [Anaerostipes caccae DSM 14662]
gi|167652699|gb|EDR96828.1| ribosome small subunit-dependent GTPase A [Anaerostipes caccae DSM
14662]
Length = 291
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 112/226 (49%), Gaps = 23/226 (10%)
Query: 20 TGVELL-CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
TG L C + + + K + LVGD + +D + G + + R+ E++ P V+N+D
Sbjct: 17 TGTGLYECKAKGIFRNRKMKPLVGDMAEIEVLDEEKKLGNLTELLPRTNELIRPAVSNID 76
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
L++F+ PK L RFL+ E G+P + NK +L E+ L+ G+
Sbjct: 77 QALVIFAAKNPKPNYNLLDRFLLMMEKQGVPAVVCFNKTDLAKEKELSVLMDVYKDCGHR 136
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+F SV + GL + + + +TTV+ GPSGVGKSS++N L P A
Sbjct: 137 VIFTSVSGETGLSEIREAVDHKTTVLAGPSGVGKSSMMNLL--YPDA------------- 181
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244
+ G VS K RGKHTTRH L+ + ++ DTPGF+
Sbjct: 182 -------NMETGAVSEKIQRGKHTTRHSELIRVGEDTFVMDTPGFS 220
>gi|255525644|ref|ZP_05392577.1| ribosome small subunit-dependent GTPase A [Clostridium
carboxidivorans P7]
gi|255510630|gb|EET86937.1| ribosome small subunit-dependent GTPase A [Clostridium
carboxidivorans P7]
Length = 220
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 104/189 (55%), Gaps = 23/189 (12%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
+ANV L++F++ P++ L +FL+ E + + NK++LV +E +N +
Sbjct: 1 MANVTQALVVFALRNPEINEELLNKFLLSCEYNNLKAIVCFNKLDLVLQEEMNEIVEMVK 60
Query: 134 TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
+ GYE LF + G+D + ++L+D TV+ GPSGVGKS+++N+
Sbjct: 61 SAGYETLFLKAKEGYGIDLIREKLQDNVTVLCGPSGVGKSTILNS--------------- 105
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
I+G E GE+S K RGKHTTRH L+ + G G+L DTPGF+ + ++K
Sbjct: 106 ----IMGE---EVMATGEISEKLRRGKHTTRHSELIDI-GNGFLVDTPGFSSLEIEFISK 157
Query: 254 QSLAQTFPE 262
+ L Q FPE
Sbjct: 158 EDLQQCFPE 166
>gi|373106187|ref|ZP_09520490.1| ribosome small subunit-dependent GTPase A [Stomatobaculum longum]
gi|371652562|gb|EHO17970.1| ribosome small subunit-dependent GTPase A [Stomatobaculum longum]
Length = 289
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 119/252 (47%), Gaps = 27/252 (10%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
DC G L C R L +K + LVGD V + + I + R ++ P V
Sbjct: 16 DCG---GEVLTCKARGLFRKRGEKPLVGDLAEVEAAQTSESEANIVTLLPRKNRLIRPAV 72
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
+NVD L++ ++ P + + L ++LV E IP + K +L D L ++SR T
Sbjct: 73 SNVDQALVVMAVRTPDPQFYLLDQYLVTMELQEIPAAILFTKEDL-DRGELADYRSRYET 131
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY S E+ GL++L L +TTV+ GPSGVGKS+L N L P A
Sbjct: 132 AGYPVFSVSAENGSGLEALRAYLAGKTTVLAGPSGVGKSTLTNLL--CPAA--------- 180
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
+ GE+S K+ RGK TTRH L L YL DTPGF + T +
Sbjct: 181 -----------NMETGELSRKNLRGKQTTRHTELFCLGENSYLLDTPGFTAVEVWGDT-E 228
Query: 255 SLAQTFPEVCAV 266
+ Q FPE+ A+
Sbjct: 229 AFKQAFPEIRAL 240
>gi|376261168|ref|YP_005147888.1| ribosome small subunit-dependent GTPase A [Clostridium sp. BNL1100]
gi|373945162|gb|AEY66083.1| ribosome small subunit-dependent GTPase A [Clostridium sp. BNL1100]
Length = 305
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 115/237 (48%), Gaps = 23/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K L GD+V ID + G ++ + R +E++ P VANVD + ++ +
Sbjct: 27 CKPRGVFRKNSVTPLPGDRVGFSIIDEAKKLGNVDEILPRISELVRPAVANVDQIAIVVA 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L + L+ +E+ I + + +NK++L D+ ++ YE + S
Sbjct: 87 AKAPNPDYMLLDKLLITSETKNIRVIICINKIDL-DDGTAKNIRNAYSLADYEVVEISSV 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G L + L+ TV G SGVGKS+++N + +D+W
Sbjct: 146 QNVGYKRLKEELKGHITVFAGQSGVGKSTILNHI-----------MDSWV---------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K RGKHTTRH LL L GGY+ADTPGF+ ++ + L +PE
Sbjct: 185 -METGSVSNKIERGKHTTRHAELLELKYGGYVADTPGFSSFEIIDIPYNELESYYPE 240
>gi|293375001|ref|ZP_06621296.1| ribosome small subunit-dependent GTPase A [Turicibacter sanguinis
PC909]
gi|325843365|ref|ZP_08167948.1| ribosome small subunit-dependent GTPase A [Turicibacter sp. HGF1]
gi|292646411|gb|EFF64426.1| ribosome small subunit-dependent GTPase A [Turicibacter sanguinis
PC909]
gi|325489394|gb|EGC91767.1| ribosome small subunit-dependent GTPase A [Turicibacter sp. HGF1]
Length = 295
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 123/238 (51%), Gaps = 28/238 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R L +K K LVGD+V + D G + + R E++ PP+ANVD L++FS
Sbjct: 27 CRSRGLFRKQKITPLVGDRVRF--LVEEDGNGYVMEIEDRQNELVRPPIANVDLALVVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFC 142
+ +P L RFL E I + L K +L+ + EVL+ GY+ +
Sbjct: 85 VKEPDFNVKLLDRFLAVIEMNRIEPIIVLTKFDLLSKEEHEVLDPIFDYYRQIGYQVIET 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +++G++++ + ++D+ V+ G SGVGKSSL+N++ +
Sbjct: 145 SSRNQVGIEAITELIKDRIIVVCGQSGVGKSSLLNSIDETL------------------- 185
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
D +V E+S GRGKHTTRHV L LS GG +ADTPGF+ L ++ L++ F
Sbjct: 186 ---DIQVNEISKALGRGKHTTRHVELHKLS-GGLIADTPGFSSLDLDQLEATDLSECF 239
>gi|302386499|ref|YP_003822321.1| ribosome small subunit-dependent GTPase A [Clostridium
saccharolyticum WM1]
gi|302197127|gb|ADL04698.1| ribosome small subunit-dependent GTPase A [Clostridium
saccharolyticum WM1]
Length = 292
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 110/237 (46%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + + LVGD V +D ++++G I+ + R ++ P VANVD L+LF+
Sbjct: 25 CKAKGIFRNKNVKPLVGDDVEFSVLDRLEKKGNIDLILPRKNALVRPAVANVDQALVLFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P+ L RFLV E +P+ + NK +L + GY F S
Sbjct: 85 ITHPEPNLNLLDRFLVMMEVQEVPVKICFNKTDLCGSDKKQALGEIYEAAGYPLYFTSTY 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G++ + + ++ +TTV+ GPSGVGKSSL N L P A
Sbjct: 145 DDQGIEEIKELVQGKTTVLAGPSGVGKSSLTNLL--FPQA-------------------- 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ +S K RGKHTTRH L + YL DTPGF+ + + L FPE
Sbjct: 183 EMETANISEKIQRGKHTTRHSELFGMGRDTYLMDTPGFSSMYMEDLECGRLKDYFPE 239
>gi|433462305|ref|ZP_20419892.1| GTPase RsgA [Halobacillus sp. BAB-2008]
gi|432188993|gb|ELK46135.1| GTPase RsgA [Halobacillus sp. BAB-2008]
Length = 293
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 121/244 (49%), Gaps = 28/244 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K K LVGD V + + G I ++ +R E + PP+ANVD L++ S
Sbjct: 25 CRGRGNFRKKKVSPLVGDMVEFKADNR--EEGYILSIEERKNEFVRPPIANVDQALIVTS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC 142
+P L RFLV E+ I + ++K++ +DE+ + +++ GY +
Sbjct: 83 ATRPDFNALLLDRFLVLVEAKRIEPIIVISKMDRLDEDQVKEMQHYETMYGEIGYPVILS 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+V +D + L D+TTVI G SGVGKSSL+N++ S + D D
Sbjct: 143 AVNDPEAMDLIQSHLADRTTVIAGQSGVGKSSLLNSIDSRL----SIDTD---------- 188
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S GRGKHTTRHV L +S G +ADTPGF+ + + L + FPE
Sbjct: 189 --------EISESLGRGKHTTRHVELYEIS-NGLVADTPGFSSLEFADLELEQLPECFPE 239
Query: 263 VCAV 266
AV
Sbjct: 240 FVAV 243
>gi|222099879|ref|YP_002534447.1| GTPase engC [Thermotoga neapolitana DSM 4359]
gi|254766841|sp|B9K7Z8.1|RSGA_THENN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|221572269|gb|ACM23081.1| GTPase engC [Thermotoga neapolitana DSM 4359]
Length = 295
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 128/253 (50%), Gaps = 36/253 (14%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVV-----VGSIDWVDRRGMIENVFQRSTEILD 71
+++TG LLC +R + ++ VGD+V GS G+IENV R ++
Sbjct: 21 DEETGERLLCKLRGKFRLQNLKIYVGDRVEYTPDGTGS-------GVIENVLHRKNLLVK 73
Query: 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK-- 129
P VANVD +L+ ++ P+ + + +FLV E + L +NK+++ DEE L K
Sbjct: 74 PHVANVDQAILVVTVKMPETSTYIIDKFLVLTEKNELETVLVINKMDIYDEEDLEKVKEL 133
Query: 130 SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
R+++ Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+ +P
Sbjct: 134 ERIYSKLYPIVKTSAKTGMGIEELKKYLKGKISTMAGLSGVGKSSLLNAI--NP------ 185
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
G K RV EVS K RG+HTT LL GGY+ DTPGF +
Sbjct: 186 ----------GLKL----RVSEVSQKLQRGRHTTTSAQLLRFDFGGYVVDTPGFANLEIG 231
Query: 250 KVTKQSLAQTFPE 262
+ + L F E
Sbjct: 232 DIEPEELKYYFKE 244
>gi|348026996|ref|YP_004766801.1| ribosome biogenesis GTPase RsgA [Megasphaera elsdenii DSM 20460]
gi|341823050|emb|CCC73974.1| putative ribosome biogenesis GTPase RsgA [Megasphaera elsdenii DSM
20460]
Length = 287
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 120/243 (49%), Gaps = 25/243 (10%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G E L R K +K ++LVGD++ + + +G+IE + R +I P VAN+D L
Sbjct: 19 GRENLVECRRRGKLLKAKILVGDELEITELGQ--DKGVIEALLPRRNQIRRPAVANIDQL 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
L++ + P F + + L+ E GI TL NK +L D + +K+ GY+
Sbjct: 77 LVIMAAQSPDPNRFLVDKMLMTCEYGGIHPTLCFNKCDL-DRDTAEAYKAFYERCGYDVY 135
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S ++ GLD+L L + T GPSGVGKSSL++ L LG
Sbjct: 136 LVSAKTGEGLDTLRALLPHRMTAFAGPSGVGKSSLLSQL-------------------LG 176
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
K D VG VS K RG+HTTRH ++ L Y+ DTPGF+ + + + + F
Sbjct: 177 RK---DLSVGAVSEKIKRGRHTTRHSEIMRLDSDTYVVDTPGFSALDFEHLDPREVLRLF 233
Query: 261 PEV 263
P++
Sbjct: 234 PDM 236
>gi|170758682|ref|YP_001787818.1| ribosome-associated GTPase [Clostridium botulinum A3 str. Loch
Maree]
gi|254766365|sp|B1KX53.1|RSGA_CLOBM RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|169405671|gb|ACA54082.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum A3
str. Loch Maree]
Length = 292
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + S+D + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SVDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E S + GY+ +F + +
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 EERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPE 237
>gi|253681449|ref|ZP_04862246.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum D
str. 1873]
gi|253561161|gb|EES90613.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum D
str. 1873]
Length = 290
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 120/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K +VGD+V++ + + D G IE + +R ++ P V+N+ ++F+
Sbjct: 24 CKARGKFRKKGLTPMVGDRVIITTNN--DSYGAIEEICERDNYLIRPQVSNISQAFIVFA 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P++ L +FL++ ES I + NK++L ++ + ++ YE LF +
Sbjct: 82 LKNPEINIELLNKFLLQCESKNIKAIVCFNKLDLCEDYKEHEAVKMINESRYEYLFLKAK 141
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
GLD L ++L+ +V GPSGVGKS+++N I+G E
Sbjct: 142 EDQGLDELKEKLQGNISVFCGPSGVGKSTILN-------------------KIVGKDIME 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S + RGKHTTRH L+ ++ G++ DTPGF+ + TK+ L FPE
Sbjct: 183 ---TGLISERLKRGKHTTRHSELVEVN-NGFVVDTPGFSTLDIKFDTKEELKDYFPE 235
>gi|357463047|ref|XP_003601805.1| hypothetical protein MTR_3g085580 [Medicago truncatula]
gi|355490853|gb|AES72056.1| hypothetical protein MTR_3g085580 [Medicago truncatula]
Length = 148
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/66 (83%), Positives = 60/66 (90%)
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+GSKW++DQRV EVST+SGR KHTT HVS LPLSGGG LADTPGFNQPSLLKVTKQS+AQ
Sbjct: 26 IGSKWYDDQRVAEVSTRSGRRKHTTHHVSPLPLSGGGSLADTPGFNQPSLLKVTKQSIAQ 85
Query: 259 TFPEVC 264
TFPEV
Sbjct: 86 TFPEVS 91
>gi|406980662|gb|EKE02235.1| hypothetical protein ACD_20C00410G0021 [uncultured bacterium]
Length = 357
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 127/248 (51%), Gaps = 35/248 (14%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G+ C +R LKK K V VGD V + +++ + +I V +R+ I P +AN+D +
Sbjct: 19 GIIFECKIREKLKKEKAEVFVGDSVRLAEVNFDSNQAVITEVLERNNFIPRPSIANIDQI 78
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-EEVLNTWKSRLHTWGYEP 139
+++ ++ QP+L+ L R+L A+ IP + +NK ++ + EE+ + S GY+
Sbjct: 79 IIVAALFQPELDLIQLNRYLAHAKLYNIPAIICINKADIENKEEIKSQIISIYEPLGYKI 138
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F S ++ +G++ + L ++ +V+ G SGVGKSSL+N L P L
Sbjct: 139 VFTSAKTGMGIEEFKRVLEEKRSVLCGTSGVGKSSLLNKLH----------------PGL 182
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLL--PLSGG--GYLADTPGFNQPSLLKVTKQS 255
K +VS K+ RG H TRH+ LL PL +ADTPGF S LK
Sbjct: 183 SLK------TKQVSAKTLRGTHATRHIELLDIPLDENKMAVVADTPGF---SYLK----- 228
Query: 256 LAQTFPEV 263
FP+V
Sbjct: 229 FDNVFPDV 236
>gi|430750389|ref|YP_007213297.1| ribosome small subunit-dependent GTPase A [Thermobacillus composti
KWC4]
gi|430734354|gb|AGA58299.1| ribosome small subunit-dependent GTPase A [Thermobacillus composti
KWC4]
Length = 304
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 121/246 (49%), Gaps = 31/246 (12%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+ C R + KK LVGD+V I + G ++ + RS+ ++ PPVAN++ +++
Sbjct: 29 IRCRARGIFKKRGESPLVGDRVDYTEIGGGE--GTVDRIHPRSSVLIRPPVANIELAVVV 86
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTW---G 136
FS+ +P L L +FL E GI + L K +L+D EE +++ + G
Sbjct: 87 FSVAEPALNLQLLDKFLAFIEHAGIDAVICLTKRDLIDGPDGEEAREAFEAVQRIYPPIG 146
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y + + G+D L + L + +V+ G SGVGKSSL+NA
Sbjct: 147 YRTIATCARTGEGVDELREVLGGRLSVVCGQSGVGKSSLLNAA----------------- 189
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
+ G K +S K GRG+HTTRH L+P+ GGY+ADTPGF+Q ++ L
Sbjct: 190 -VPGLKL----ETNAISEKLGRGRHTTRHTELVPVGRGGYVADTPGFSQLDFGELQDADL 244
Query: 257 AQTFPE 262
F E
Sbjct: 245 GSCFRE 250
>gi|194014434|ref|ZP_03053051.1| ribosome small subunit-dependent GTPase A [Bacillus pumilus ATCC
7061]
gi|194013460|gb|EDW23025.1| ribosome small subunit-dependent GTPase A [Bacillus pumilus ATCC
7061]
Length = 298
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 125/253 (49%), Gaps = 29/253 (11%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D + ++G + C R + +K K LVGD VV + + D+ G + V +R+ E++ PP+
Sbjct: 18 DESQESGKVVQCRARGIFRKNKITPLVGDYVVYQADN--DKEGYLLEVKERTNELVRPPI 75
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKS 130
+NVD +L+FS +P L RFLV E+ I + + K++L+ + E + +
Sbjct: 76 SNVDQAVLVFSAAEPAFSTSLLDRFLVLVEANHIEPIICITKMDLLKTDEERETIKAYAD 135
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GYE S G++ L ++ TV G SGVGKSSL+NA+ SP + D
Sbjct: 136 DYRQIGYEVHLTSTIEGDGIEKLTPHFHNKITVFAGQSGVGKSSLLNAM--SPELALKTD 193
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
++S+ GRGKHTTRHV L+ + G +ADTPGF+
Sbjct: 194 --------------------DISSHLGRGKHTTRHVELIR-TADGLIADTPGFSSLEFTG 232
Query: 251 VTKQSLAQTFPEV 263
+ + L F ++
Sbjct: 233 IEAEDLGLYFLDI 245
>gi|299535926|ref|ZP_07049246.1| GTPase engC [Lysinibacillus fusiformis ZC1]
gi|424738864|ref|ZP_18167293.1| GTPase engC [Lysinibacillus fusiformis ZB2]
gi|298728678|gb|EFI69233.1| GTPase engC [Lysinibacillus fusiformis ZC1]
gi|422947348|gb|EKU41745.1| GTPase engC [Lysinibacillus fusiformis ZB2]
Length = 294
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 124/245 (50%), Gaps = 27/245 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + LVGD +V +++ G I+ +F+R E++ PP+AN+D +L+FS
Sbjct: 25 CRGRGVFRNRGESPLVGD-IVEYTMETEGSDGTIQKIFERQNELVRPPIANIDQGILVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+ +P L RFLV ES + + L K++L++ E L + + + GY L
Sbjct: 84 VKEPNFNTILLDRFLVVLESFHVHPIICLTKMDLLENDEREELQNYIADYESMGYTVLQT 143
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + ++ L L+ +TTV+ G SGVGKS+L+N L P L K
Sbjct: 144 YKDEEELVERLRPILKGKTTVLAGQSGVGKSTLLNTLI----------------PELNLK 187
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S GRGKHTTRHV L+ + G LADTPGF+ ++ K+ L FPE
Sbjct: 188 ------TGIISQSLGRGKHTTRHVELIEVC-DGLLADTPGFSSLDFDEIEKEELGVCFPE 240
Query: 263 VCAVG 267
+ V
Sbjct: 241 MARVA 245
>gi|229918585|ref|YP_002887231.1| ribosome small subunit-dependent GTPase A [Exiguobacterium sp.
AT1b]
gi|229470014|gb|ACQ71786.1| ribosome small subunit-dependent GTPase A [Exiguobacterium sp.
AT1b]
Length = 294
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 125/252 (49%), Gaps = 29/252 (11%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ++ E+ C R +K +VGD VV+ D D G I V +R ++ PP+
Sbjct: 14 DVMTESNQEIRCRARGNFRKRNISPVVGDDVVIQ--DQEDGTGYILEVEERQNHLVRPPI 71
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSR 131
AN+D LLFS+ +P L RFLV ES I + L K++L+ EE + +R
Sbjct: 72 ANIDQAFLLFSVKEPAFSYHLLDRFLVLIESKQIHPIIVLTKMDLLSEEETGPIQEAVAR 131
Query: 132 LHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
GY+ + S E G+D + +++T+V G +GVGKSSL+NA+ +P A
Sbjct: 132 YRDIGYDVIETSTELSDGVDQVRGLFKEKTSVFAGQTGVGKSSLLNAV--APELELAT-- 187
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL-LK 250
G++S GRGKHTTRHV+L+ L+ G +ADTPGF+ +
Sbjct: 188 ------------------GKISKSLGRGKHTTRHVTLIKLA-DGLVADTPGFSSLEFPQE 228
Query: 251 VTKQSLAQTFPE 262
+ L FPE
Sbjct: 229 LEADELRWCFPE 240
>gi|160947224|ref|ZP_02094391.1| hypothetical protein PEPMIC_01157 [Parvimonas micra ATCC 33270]
gi|158446358|gb|EDP23353.1| ribosome small subunit-dependent GTPase A [Parvimonas micra ATCC
33270]
Length = 302
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 28/233 (12%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
KTG + R + +K K +VGD V + + D I VF R +IL PPV NVD
Sbjct: 31 KTG-RYMSKARGVFRKQKFTPMVGDNVKIEI--FADNTACIVEVFDRKNKILRPPVVNVD 87
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
+++FS+ P++ + R+++ E IP+ L LNK +L+D+E +++ GY+
Sbjct: 88 QAIIVFSLKDPEISYKIIDRYIMYYEVMKIPIILCLNKCDLIDKETEINFRNIYDKLGYK 147
Query: 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+F S+ L L + + +D+ +VI G SGVGKS+++N L D + W
Sbjct: 148 IIFNSIS--LDNRKLFEDICKDKISVITGASGVGKSTILNFLN--------PDYNIW--- 194
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
VG++S K+ RGKHTTR +L ++ DT GF L K
Sbjct: 195 -----------VGDISNKTKRGKHTTRAATLYEFFDNSFIIDTAGFTSLDLTK 236
>gi|255657709|ref|ZP_05403118.1| ribosome small subunit-dependent GTPase A [Mitsuokella multacida
DSM 20544]
gi|260849897|gb|EEX69904.1| ribosome small subunit-dependent GTPase A [Mitsuokella multacida
DSM 20544]
Length = 298
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 123/243 (50%), Gaps = 35/243 (14%)
Query: 26 CVVRALLKKIKRR--VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R KK ++ V+ GD+V + + D G+IE R + P VAN+ ++L
Sbjct: 25 CKLRGKFKKRRQSTGVVPGDRVAIELLP--DGTGVIEQQLPRVNLLRRPAVANLTQVILT 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDEEVLNTWKSRL---HTWGYEP 139
F+ P L P L RFLV AE +GIP + + +NK++L + W+ L T GY
Sbjct: 83 FAAAAPDLHPLLLNRFLVLAEWSGIPKIVICVNKMDLHE----GPWQDFLRDYETIGYPV 138
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+ S ++ G+D L RLR + +V GPSGVGKSSL+N + +P + A
Sbjct: 139 VRVSAQTGQGIDVLRSRLRGEVSVFAGPSGVGKSSLLNQV--NPALTLA----------- 185
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G VS K RG+HTTR LLP GGY+ DTPGF+ + ++ L
Sbjct: 186 ---------TGHVSEKIKRGRHTTRVAELLPYE-GGYIVDTPGFSAMEMAELQVTDLPHY 235
Query: 260 FPE 262
FPE
Sbjct: 236 FPE 238
>gi|296120818|ref|YP_003628596.1| ribosome small subunit-dependent GTPase A [Planctomyces limnophilus
DSM 3776]
gi|296013158|gb|ADG66397.1| ribosome small subunit-dependent GTPase A [Planctomyces limnophilus
DSM 3776]
Length = 375
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 131/257 (50%), Gaps = 43/257 (16%)
Query: 21 GVELLCVVRALLKKIKRR----VLVGDKV-------VVGSIDWVD-RRGMIENVFQRSTE 68
G +C VR +++ + R V+ GDKV G I+ V+ R G++ Q
Sbjct: 98 GRRFMCSVRRIVRTVARETRNAVVAGDKVWITASDETTGVIERVEPREGVLSRGHQNREH 157
Query: 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT- 127
IL VANV +L++ S QP L+P + RFLV A G+ + +NK++LVD L +
Sbjct: 158 IL---VANVSQMLIVGSAAQPNLKPALIDRFLVSAGKGGVHPIVCVNKIDLVDPVELVSL 214
Query: 128 --WKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHA 185
W S++ G + + SV + G+D L Q L+++ TV G SGVGKSSL+NA+
Sbjct: 215 LGWYSQI---GCDVVMTSVTTGYGVDRLRQLLKNEQTVFAGQSGVGKSSLLNAV------ 265
Query: 186 SDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ 245
+P L + G+VS + +GKHTTR+ LLPL GG++ DTPG Q
Sbjct: 266 ----------QPGLSLQ------TGQVSEVTQKGKHTTRYTQLLPLIEGGWVVDTPGIRQ 309
Query: 246 PSLLKVTKQSLAQTFPE 262
L V + + F E
Sbjct: 310 MELWDVRPEEIEGYFVE 326
>gi|219849209|ref|YP_002463642.1| ribosome small subunit-dependent GTPase A [Chloroflexus aggregans
DSM 9485]
gi|219543468|gb|ACL25206.1| ribosome small subunit-dependent GTPase A [Chloroflexus aggregans
DSM 9485]
Length = 319
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 131/256 (51%), Gaps = 41/256 (16%)
Query: 24 LLCVVRALLKKIKRR---VLVGDKVVVGSIDWVDRRGMIENVFQRSTEIL---------- 70
L C +R LKK ++ V++GD+V V + + +G IE V R +++
Sbjct: 38 LECRLRGRLKKERQATDLVVIGDQVEVVLVGY--GQGAIEAVLPRRSQLARRAAGSRGAY 95
Query: 71 --DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW 128
D VANVD +LL+F+ +P+ P L R+LV E + +P + K++LV EV +
Sbjct: 96 KEDVIVANVDQVLLVFACAKPEFTPRMLDRYLVICEHSELPAIIVATKIDLVGREVAESL 155
Query: 129 KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
GY ++ S+ S G+ L RL + +V+ G SGVGKSSL+NA+
Sbjct: 156 FRPYEQIGYPVVYTSIISGEGIADLRDRLIGKISVVTGKSGVGKSSLLNAI--------- 206
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS--GGGYLADTPGFNQP 246
+P L + R GEVS + +G+HTT L+PL+ GGGY+ADTPG +
Sbjct: 207 -------QPGL------NLRTGEVSERLTKGRHTTTVAELIPLTMPGGGYVADTPGIREI 253
Query: 247 SLLKVTKQSLAQTFPE 262
L K+ + LA F E
Sbjct: 254 GLWKLPARDLAWCFRE 269
>gi|393201775|ref|YP_006463617.1| GTPase [Solibacillus silvestris StLB046]
gi|406664652|ref|ZP_11072427.1| Putative ribosome biogenesis GTPase RsgA [Bacillus isronensis
B3W22]
gi|327441106|dbj|BAK17471.1| predicted GTPase [Solibacillus silvestris StLB046]
gi|405387500|gb|EKB46924.1| Putative ribosome biogenesis GTPase RsgA [Bacillus isronensis
B3W22]
Length = 293
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 122/248 (49%), Gaps = 28/248 (11%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
+K G + C R + + LVGD V D G I+ + +R E++ PP+ANV
Sbjct: 17 EKDGNLIQCRARGIFRNRGESPLVGDFVEYSYDGESD--GSIDKILERHNELVRPPIANV 74
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHT 134
D LL+FS +P L RFLV ES + + L K++L+++ L T+
Sbjct: 75 DQALLVFSAKEPDFNTVLLDRFLVVLESFHVQPIIILTKMDLLNDAERAHLQTYIDDYKE 134
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY+ + ++ L+ + L+++T+V+ G SGVGKS+L+N L
Sbjct: 135 IGYDIIETYIDDPTLLEKIEPYLQEKTSVLAGQSGVGKSTLLNTLL-------------- 180
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
P L D + G +S GRGKHTTRHV L+ + GG LADTPGF+ + K+
Sbjct: 181 --PEL------DLKTGIISKSLGRGKHTTRHVELIEVC-GGLLADTPGFSSFDFEMIEKE 231
Query: 255 SLAQTFPE 262
L PE
Sbjct: 232 ELTSCLPE 239
>gi|357059546|ref|ZP_09120388.1| ribosome small subunit-dependent GTPase A [Selenomonas infelix ATCC
43532]
gi|355371623|gb|EHG18967.1| ribosome small subunit-dependent GTPase A [Selenomonas infelix ATCC
43532]
Length = 290
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 123/242 (50%), Gaps = 29/242 (11%)
Query: 24 LLCVVRALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+LC +R +KK + + + GD V + I G+IE + +R+ + P VAN+ ++
Sbjct: 24 ILCKLRGRVKKGRSDMGLVPGDLVALERIS--PEEGVIERIEERTNLLQRPRVANLTQIV 81
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
+ + P P ++RFLV AE +G+ + L +NK++L + T+ + GY L
Sbjct: 82 ITVAAASPDPHPLVVSRFLVLAELSGVKKIILCVNKMDLCTGDP-ATFLAEYEAAGYPVL 140
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S E GL L +RL + TV+ GPSG GKSSL+NAL +P L
Sbjct: 141 RVSAEQGTGLAELRERLAGEITVLTGPSGAGKSSLLNAL----------------DPSLA 184
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
G VS K GRG+HTTR LLP GGY+ DTPGF Q L ++ + L F
Sbjct: 185 LV------TGAVSEKIGRGRHTTRRAELLPFM-GGYVVDTPGFTQQELTELGPEDLTHCF 237
Query: 261 PE 262
P+
Sbjct: 238 PD 239
>gi|157692258|ref|YP_001486720.1| ribosome-associated GTPase [Bacillus pumilus SAFR-032]
gi|254766351|sp|A8FD43.1|RSGA_BACP2 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|157681016|gb|ABV62160.1| ribosome-associated GTP-binding protein [Bacillus pumilus SAFR-032]
Length = 298
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 125/253 (49%), Gaps = 29/253 (11%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D + ++G + C R + +K K LVGD VV + + D+ G + V +R+ E++ PP+
Sbjct: 18 DESQESGKVVQCRARGIFRKNKITPLVGDYVVYQADN--DKEGYLLEVKERTNELVRPPI 75
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKS 130
+NVD +L+FS +P L RFLV E+ I + + K++L+ + E + +
Sbjct: 76 SNVDQAVLVFSAAEPTFSTSLLDRFLVLVEANHIEPIICITKMDLLKTDEERETIMAYAD 135
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GYE S G++ L ++ TV G SGVGKSSL+NA+ SP + D
Sbjct: 136 DYRQIGYEVHLTSTIEGDGIEKLTPHFHNKITVFAGQSGVGKSSLLNAM--SPELALKTD 193
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
++S+ GRGKHTTRHV L+ + G +ADTPGF+
Sbjct: 194 --------------------DISSHLGRGKHTTRHVELIR-TANGLIADTPGFSSLEFTG 232
Query: 251 VTKQSLAQTFPEV 263
+ + L F ++
Sbjct: 233 IEAEDLGLYFLDI 245
>gi|424834137|ref|ZP_18258853.1| GTPase RsgA [Clostridium sporogenes PA 3679]
gi|365978912|gb|EHN14978.1| GTPase RsgA [Clostridium sporogenes PA 3679]
Length = 292
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 118/237 (49%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE ++ R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYDRKSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E + GY+ +F + +
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIIFMIEQAGYDIIFLNAK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 EEKNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + G L DTPGF+ + + K++L PE
Sbjct: 182 TMLTGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDISFMEKENLLHCIPE 237
>gi|374339785|ref|YP_005096521.1| ribosome small subunit-dependent GTPase A [Marinitoga piezophila
KA3]
gi|372101319|gb|AEX85223.1| ribosome small subunit-dependent GTPase A [Marinitoga piezophila
KA3]
Length = 300
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 25/244 (10%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+T ++ +R K K + +VGD V SID V IEN+ R + P +ANVD
Sbjct: 22 ETNEKITAYLRGKFKLQKIKPIVGDYVEY-SIDGVGG-AKIENILPRKNMLYRPKIANVD 79
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
+L+ + PK++ + +FLV+ E + + LNKV+L+++ ++ + ++++ Y
Sbjct: 80 QTILVTCLKSPKVDYLIIDKFLVQVEKNNLDCVIVLNKVDLLEQNEIDEF-MKIYSPLYP 138
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S + +G+D + + L+++ + G SGVGKSSL+NA+
Sbjct: 139 VVLASAKKNIGIDEIKEYLKNKVSTFAGMSGVGKSSLLNAINPGLQL------------- 185
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
RVGE+S K RGKHTT + LL GG++ADTPGF + + L +
Sbjct: 186 ---------RVGEISEKLQRGKHTTTYTELLSFDFGGFVADTPGFAALEVYDFEPEKLKE 236
Query: 259 TFPE 262
F E
Sbjct: 237 FFIE 240
>gi|366166728|ref|ZP_09466483.1| ribosome small subunit-dependent GTPase A [Acetivibrio
cellulolyticus CD2]
Length = 295
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 117/238 (49%), Gaps = 24/238 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K L GDKV + + ++ G IE +F R ++++ P VANV+ + ++ +
Sbjct: 25 CKARGIFRKDSFTPLPGDKVSISVSNQDEKVGNIEEIFPRDSQLIRPAVANVNQIAIVIA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL-VDEEVLNTWKSRLHTWGYEPLFCSV 144
+ P+ + L + L+ E I + +NK++L D E N +S GY L S
Sbjct: 85 IKSPQPDFTLLDKLLITVEQKDISAVICINKIDLDKDMEYKNVAES-YQKAGYRVLALSS 143
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ G D L L+D+TT G SGVGKS+++N +L S
Sbjct: 144 AIETGFDELESALKDKTTAFAGQSGVGKSTILNR-------------------VLDSYVM 184
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E G+VS + RG+HTTRH L+ L GG++ DTPGF+ L + L +PE
Sbjct: 185 E---TGKVSDRIERGRHTTRHAELIELKSGGFVVDTPGFSSFELSGLEAGELQNFYPE 239
>gi|125973094|ref|YP_001037004.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
ATCC 27405]
gi|256004597|ref|ZP_05429575.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
DSM 2360]
gi|281417289|ref|ZP_06248309.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
JW20]
gi|385779005|ref|YP_005688170.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
DSM 1313]
gi|419721500|ref|ZP_14248663.1| ribosome biogenesis GTPase RsgA [Clostridium thermocellum AD2]
gi|419725124|ref|ZP_14252177.1| ribosome biogenesis GTPase RsgA [Clostridium thermocellum YS]
gi|125713319|gb|ABN51811.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
ATCC 27405]
gi|255991469|gb|EEU01573.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
DSM 2360]
gi|281408691|gb|EFB38949.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
JW20]
gi|316940685|gb|ADU74719.1| ribosome small subunit-dependent GTPase A [Clostridium thermocellum
DSM 1313]
gi|380771445|gb|EIC05312.1| ribosome biogenesis GTPase RsgA [Clostridium thermocellum YS]
gi|380782440|gb|EIC12075.1| ribosome biogenesis GTPase RsgA [Clostridium thermocellum AD2]
Length = 294
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 23/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K + L GD+VV+ ID ++G IE + +R +++ P VAN++ + L+ S
Sbjct: 25 CKARGVFRKDSKIPLPGDEVVISVIDEEKKKGYIEEICERKIQLIRPAVANINQIALVVS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L + L+ + + +NK++L DE + G E + S
Sbjct: 85 VKSPLPDFVLLDKLLITVMQKELNAIICINKIDL-DEGYKDVIIDCYKGTGVETVCVSSV 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G + L + L +TTV G SGVGKS+++N IL S E
Sbjct: 144 LNVGFEQLAKMLEGKTTVFAGQSGVGKSTILNK-------------------ILDSYVME 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S K RG+HTTRH LL L GG++ DTPGF+ L ++ + L +PE
Sbjct: 185 ---TGEISDKIERGRHTTRHAELLELKSGGFVVDTPGFSSFELSEIEPKELQNYYPE 238
>gi|323487015|ref|ZP_08092327.1| hypothetical protein HMPREF9474_04078 [Clostridium symbiosum
WAL-14163]
gi|323692057|ref|ZP_08106304.1| ribosome small subunit-dependent GTPase A [Clostridium symbiosum
WAL-14673]
gi|355630341|ref|ZP_09050800.1| ribosome small subunit-dependent GTPase A [Clostridium sp.
7_3_54FAA]
gi|323399663|gb|EGA92049.1| hypothetical protein HMPREF9474_04078 [Clostridium symbiosum
WAL-14163]
gi|323503857|gb|EGB19672.1| ribosome small subunit-dependent GTPase A [Clostridium symbiosum
WAL-14673]
gi|354818689|gb|EHF03156.1| ribosome small subunit-dependent GTPase A [Clostridium sp.
7_3_54FAA]
Length = 292
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 113/237 (47%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + + + + LVGD V +D + G I+ + R +++ P V+NVD +++F+
Sbjct: 25 CKAKGVFRNRNIKPLVGDDVEFMVLDEKEGTGNIDAILPRKNKLIRPAVSNVDQAVVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RFLV E IP+ + NK++L + + ++ GY F S
Sbjct: 85 VTEPLPNLNLLDRFLVMMERQEIPVIICFNKIDLSGGKEIEELRAIYGPAGYTLHFISTY 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
GL+ L + + +TTV+ GPSGVGKSS+ N L+ P A
Sbjct: 145 EAAGLEKLHELIAGKTTVLAGPSGVGKSSITNFLQ--PEAR------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K RGKHTTRH L + G Y+ DTPGF+ + + L FPE
Sbjct: 184 -METGVVSEKIKRGKHTTRHSELFFVENGTYMMDTPGFSSMYIEDLEPNELKDYFPE 239
>gi|160903336|ref|YP_001568917.1| ribosome small subunit-dependent GTPase A [Petrotoga mobilis SJ95]
gi|160360980|gb|ABX32594.1| ribosome small subunit-dependent GTPase A [Petrotoga mobilis SJ95]
Length = 300
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 123/241 (51%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + K K R +VGD V S D + G IEN+ +R E+ P VAN+D L+L+ S
Sbjct: 29 CFLPGRFKLQKIRPIVGDYVEY-SKDQQNAYGRIENILERKNELYRPRVANLDQLVLVTS 87
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV--DEEVLNTWKSRLHTWG--YEPLF 141
+ +P+++ + + +V AE + + + LNK +L+ DEE + + +G Y +
Sbjct: 88 IKEPRVDLIVVDKIIVLAEKEKLDVVIVLNKTDLLGSDEEK-REMERFIEIYGKIYPVIP 146
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S +K LD L L+++ + GPSGVGKSSL+N L +P L
Sbjct: 147 TSKITKNNLDILKSYLKNKVSTFAGPSGVGKSSLLNVL----------------DPKL-- 188
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
R GE+S K GRGKHTT + LL GGY+ DTPGF+ L + K + + F
Sbjct: 189 ----KLREGEISKKLGRGKHTTTYAELLYFDFGGYIVDTPGFSSLELRGIKKDEVRRYFR 244
Query: 262 E 262
E
Sbjct: 245 E 245
>gi|384135001|ref|YP_005517715.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
gi|339289086|gb|AEJ43196.1| ribosome small subunit-dependent GTPase A [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 291
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 116/237 (48%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + K VLVGD V + + G+I V R T ++ PP+ANVDH+++ S
Sbjct: 25 CRARGVFKVKGTTVLVGDFVRYEPVGA--QEGIIREVLPRRTGLIRPPIANVDHVVVACS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P L + L + L++A G+ T+A K +LV E GYE + + +
Sbjct: 83 FVTPDLSFYMLDKTLLQASVAGVEPTIAFTKADLVSPERAAATVELYRRLGYEAVAVAAK 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G+ L RL+ + TV+ GPSG GKS+L NAL +P S
Sbjct: 143 QGEGVSLLRARLQGRVTVLAGPSGAGKSTLANAL--APGIS------------------- 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GEVS K GRG+ TTRHV L+ L ++AD PGF+Q + V + + FPE
Sbjct: 182 -FKTGEVSEKIGRGRQTTRHVELVRLDDVTWMADAPGFSQLQ-VPVASREVRLHFPE 236
>gi|297617053|ref|YP_003702212.1| ribosome small subunit-dependent GTPase A [Syntrophothermus
lipocalidus DSM 12680]
gi|297144890|gb|ADI01647.1| ribosome small subunit-dependent GTPase A [Syntrophothermus
lipocalidus DSM 12680]
Length = 293
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 125/239 (52%), Gaps = 27/239 (11%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
L C +R KI+ +V+ GD+VV+ + G++E V R TE++ P +ANVD + ++
Sbjct: 27 LACKLRG---KIRDQVVTGDRVVITVLG--TGTGVVEKVLPRRTELVRPRIANVDKVFIV 81
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FS + P+ L R LV A G+ + LNK +L GY+ + S
Sbjct: 82 FSCNCPEPSLVLLDRLLVLASCHGLYPYIVLNKCDLDPAPRAVDIIDYYPRAGYKLILTS 141
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ G+D +++ + +V+ GPSGVGKSSL+NA + ++
Sbjct: 142 AVNGEGIDEVVKEVEGSISVLAGPSGVGKSSLLNA-------------------VFPDRY 182
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
Q E+S K+GRG+HTTRHV L L GG++ADTPGF+ L ++ ++ LA+ F E
Sbjct: 183 LPTQ---EISEKTGRGRHTTRHVELFSLENGGWIADTPGFSVMDLPRMKREDLARHFIE 238
>gi|418045775|ref|ZP_12683870.1| ribosome biogenesis GTPase RsgA [Thermotoga maritima MSB8]
gi|351676660|gb|EHA59813.1| ribosome biogenesis GTPase RsgA [Thermotoga maritima MSB8]
Length = 293
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 127/248 (51%), Gaps = 26/248 (10%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++TG +LC +R + ++ VGD+V + G+IENV R + P VAN
Sbjct: 19 DEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDET--GSGVIENVLHRKNLLTKPHVAN 76
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK--SRLHT 134
VD ++L+ ++ P+ + + +FLV AE + + +NK++L DE+ L + +++
Sbjct: 77 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS 136
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+ +P
Sbjct: 137 GLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI--NP----------- 183
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
G K RV EVS K RG+HTT LL GGY+ DTPGF + + +
Sbjct: 184 -----GLKL----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 234
Query: 255 SLAQTFPE 262
L F E
Sbjct: 235 ELKHYFKE 242
>gi|55670093|pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
gi|55670094|pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
gi|55670095|pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 127/248 (51%), Gaps = 26/248 (10%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++TG +LC +R + ++ VGD+V + G+IENV R + P VAN
Sbjct: 27 DEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDET--GSGVIENVLHRKNLLTKPHVAN 84
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK--SRLHT 134
VD ++L+ ++ P+ + + +FLV AE + + +NK++L DE+ L + +++
Sbjct: 85 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS 144
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+ +P
Sbjct: 145 GLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI--NP----------- 191
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
G K RV EVS K RG+HTT LL GGY+ DTPGF + + +
Sbjct: 192 -----GLKL----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242
Query: 255 SLAQTFPE 262
L F E
Sbjct: 243 ELKHYFKE 250
>gi|15644464|ref|NP_229516.1| hypothetical protein TM1717 [Thermotoga maritima MSB8]
gi|38257793|sp|Q9X242.1|RSGA_THEMA RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|4982294|gb|AAD36783.1|AE001811_3 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 295
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 127/248 (51%), Gaps = 26/248 (10%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++TG +LC +R + ++ VGD+V + G+IENV R + P VAN
Sbjct: 21 DEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDET--GSGVIENVLHRKNLLTKPHVAN 78
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK--SRLHT 134
VD ++L+ ++ P+ + + +FLV AE + + +NK++L DE+ L + +++
Sbjct: 79 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS 138
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+ +P
Sbjct: 139 GLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI--NP----------- 185
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
G K RV EVS K RG+HTT LL GGY+ DTPGF + + +
Sbjct: 186 -----GLKL----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 236
Query: 255 SLAQTFPE 262
L F E
Sbjct: 237 ELKHYFKE 244
>gi|335049787|ref|ZP_08542773.1| ribosome small subunit-dependent GTPase A [Megasphaera sp. UPII
199-6]
gi|333762282|gb|EGL39786.1| ribosome small subunit-dependent GTPase A [Megasphaera sp. UPII
199-6]
Length = 285
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 111/230 (48%), Gaps = 27/230 (11%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
K+K ++LVGD +++ ID +G+IE V R E+ P VANVD ++++ + PKL
Sbjct: 30 KVKTKILVGDMLMITPID--TSKGVIEQVLARKNELRRPAVANVDQIMVVMTPAVPKLNY 87
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH-TWGYEPLFCSVESKLGLDS 152
L + L LNK EL + W ++ + GYE S + G+ +
Sbjct: 88 RLTDTLLASCMYQHLTPILLLNKCEL--NPRMTQWYTKYYRQCGYEVYAVSAYTGAGIGA 145
Query: 153 LLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212
+ RL + TV GPSGVGKSSL+ + ED +G V
Sbjct: 146 VTARLDGKMTVFSGPSGVGKSSLLARITGR----------------------EDLHIGAV 183
Query: 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
S K RG+HTTRH ++PL Y+ DTPGF+ +L+ + + FPE
Sbjct: 184 SKKIQRGRHTTRHAEIIPLREQTYVVDTPGFSAVALVSAAPEEIQNLFPE 233
>gi|403253348|ref|ZP_10919649.1| hypothetical protein EMP_06212 [Thermotoga sp. EMP]
gi|402810882|gb|EJX25370.1| hypothetical protein EMP_06212 [Thermotoga sp. EMP]
Length = 293
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 128/253 (50%), Gaps = 36/253 (14%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVV-----VGSIDWVDRRGMIENVFQRSTEILD 71
+++TG +LC +R + ++ VGD+V GS G+IENV R +
Sbjct: 19 DEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDGTGS-------GVIENVLHRKNLLTK 71
Query: 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK-- 129
P VANVD ++L+ ++ P+ + + +FLV AE + + +NK++L DE+ L +
Sbjct: 72 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVREL 131
Query: 130 SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
+++ Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+ +P
Sbjct: 132 EEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI--NP------ 183
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
G K RV EVS K RG+HTT LL GGY+ DTPGF +
Sbjct: 184 ----------GLKL----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEIN 229
Query: 250 KVTKQSLAQTFPE 262
+ + L F E
Sbjct: 230 DIEPEELKHYFKE 242
>gi|325294531|ref|YP_004281045.1| ribosome biogenesis GTPase RsgA [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064979|gb|ADY72986.1| ribosome biogenesis GTPase RsgA [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 294
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 118/233 (50%), Gaps = 30/233 (12%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
K K +V GDKV +D IE + +R ++ PP+ANV+ ++++ ++ P +
Sbjct: 34 KKKDKVYAGDKVKGRIVD--SESFAIEVIEERKNLLIRPPIANVEKVVIVATIQNPPFQS 91
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCSVESKLGL 150
F + LV G+ + NK++L+DE E L W + GY+ + S E+K G+
Sbjct: 92 FLMDNLLVVYSYLGLDTVIVFNKIDLLDEVGKEELQRWYTIYKNAGYKVIKTSAETKEGI 151
Query: 151 DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210
+ L + L ++ GPSGVGKSSLI+ L ++ R+G
Sbjct: 152 EELRRELLGAISIFAGPSGVGKSSLISKLTG-----------------------KELRIG 188
Query: 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQSLAQTFPE 262
EVS K+ RGKHTTR V L+P G ++ D PGF++ L + K+ + FPE
Sbjct: 189 EVSRKTERGKHTTREVRLIPFE-GSFIGDAPGFSRVEALNFMEKEEVRFYFPE 240
>gi|389573299|ref|ZP_10163374.1| ribosome small subunit-dependent GTPase A [Bacillus sp. M 2-6]
gi|388426996|gb|EIL84806.1| ribosome small subunit-dependent GTPase A [Bacillus sp. M 2-6]
Length = 298
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 122/249 (48%), Gaps = 29/249 (11%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
++G + C R + +K K LVGD VV + + D+ G + V +R+ E++ PP++NVD
Sbjct: 22 ESGKVIQCRARGIFRKNKITPLVGDYVVYQADN--DKEGYLLEVKERTNELIRPPISNVD 79
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHT 134
+L+FS +P L RFLV E+ I + + K++L+ + E ++ +
Sbjct: 80 QAVLVFSAAEPTFSTSLLDRFLVLVEANHIEPIICITKMDLLKTEQEREAIHAYAEDYRQ 139
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY+ S G++ L + TV G SGVGKSSL+NA+
Sbjct: 140 IGYDVHLTSTIEGDGIEKLTPHFHHKITVFAGQSGVGKSSLLNAM--------------- 184
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
P L K ++S+ GRGKHTTRHV L+ + G +ADTPGF+ + +
Sbjct: 185 -SPDLALK------TNDISSHLGRGKHTTRHVELIR-TAEGLIADTPGFSSLEFTGIEAE 236
Query: 255 SLAQTFPEV 263
L F E+
Sbjct: 237 DLGLYFLEI 245
>gi|167757022|ref|ZP_02429149.1| hypothetical protein CLORAM_02571 [Clostridium ramosum DSM 1402]
gi|237735908|ref|ZP_04566389.1| ribosome-associated GTPase [Mollicutes bacterium D7]
gi|365830320|ref|ZP_09371902.1| ribosome small subunit-dependent GTPase A [Coprobacillus sp.
3_3_56FAA]
gi|374626099|ref|ZP_09698513.1| ribosome small subunit-dependent GTPase A [Coprobacillus sp.
8_2_54BFAA]
gi|167703197|gb|EDS17776.1| ribosome small subunit-dependent GTPase A [Clostridium ramosum DSM
1402]
gi|229381653|gb|EEO31744.1| ribosome-associated GTPase [Coprobacillus sp. D7]
gi|365263501|gb|EHM93331.1| ribosome small subunit-dependent GTPase A [Coprobacillus sp.
3_3_56FAA]
gi|373914625|gb|EHQ46440.1| ribosome small subunit-dependent GTPase A [Coprobacillus sp.
8_2_54BFAA]
Length = 291
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 118/254 (46%), Gaps = 37/254 (14%)
Query: 26 CVVRALLKKIKRRVLVGDKV---VVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
C R +K + + LVGD V V G D G + NV R ++ PP+ NVD L+
Sbjct: 25 CRARGKFRKDEIKPLVGDFVEYEVEG-----DNDGYVMNVLPRHNCLVRPPICNVDQALI 79
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+ S +P L +FL+ E GI + ++K++L ++E + + GY
Sbjct: 80 VSSCKEPDFSSILLDKFLLVIEHLGIEPIIIISKMDLDEDESVKQYVKDYRQAGYRVYEI 139
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + GL+ L +D+ +VI G SGVGKSS +NAL D++ E
Sbjct: 140 SSKDNHGLEELKTVFKDKVSVITGQSGVGKSSFLNAL----------DINLKLE------ 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ------PSLLKVTKQSL 256
E+S GRGKHTTRHV LL + GGYL DTPGF+ P L V
Sbjct: 184 ------TNEISKSLGRGKHTTRHVELLKMY-GGYLGDTPGFSSLELEMTPEELAVAYHDF 236
Query: 257 AQTFPEVCAVGLLY 270
AQ E G L+
Sbjct: 237 AQFSHECKFRGCLH 250
>gi|325290441|ref|YP_004266622.1| ribosome biogenesis GTPase RsgA [Syntrophobotulus glycolicus DSM
8271]
gi|324965842|gb|ADY56621.1| ribosome biogenesis GTPase RsgA [Syntrophobotulus glycolicus DSM
8271]
Length = 290
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 118/237 (49%), Gaps = 26/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + K+ + GDKV++ S + + IE V R ++ P +ANVD LL+ +
Sbjct: 26 CSLRGRFRVKKQDFIPGDKVMILSDRGI--KATIEEVLARENSLIRPNIANVDQALLVLA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
M P + L R LV+ GI + K +L E L+ ++ T G + S
Sbjct: 84 MSTPDTDFNLLDRLLVQVAHAGIEPVIVFTKYDLARESDLSPYEY-YRTIGCRVFYVSNI 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G++ + + +R + +V+ GPSG GKSSL+N+L EP L K
Sbjct: 143 LAQGMEEVREIVRGRVSVLAGPSGAGKSSLLNSL----------------EPSLKLK--- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K GRGKHTTRHV LL + G +ADTPGF+ L + K+ L + FPE
Sbjct: 184 ---TGSVSDKLGRGKHTTRHVELLE-AAKGLIADTPGFSSLYLPPMRKEQLQEYFPE 236
>gi|306820533|ref|ZP_07454166.1| ribosome small subunit-dependent GTPase A [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551447|gb|EFM39405.1| ribosome small subunit-dependent GTPase A [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 293
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 119/241 (49%), Gaps = 29/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R KK + ++VGD V + D +D +I+ V+++ ++ P VAN+ L+L+FS
Sbjct: 21 CKPRGTFKKENKSIIVGDYVDITITDEIDNEAVIDFVYEQKNMLIRPSVANITKLILVFS 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+ +PKL + + FLV A+ I + +K +L DE+ ++K + + GYE +
Sbjct: 81 VMEPKLNLYIIDSFLVVAKKNNIDAVICFSKTDL-DED--QSYKEAVKIYKDIGYETVEI 137
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +G++ L ++ V+ GPSG GKSSLIN L + +
Sbjct: 138 SSVNNIGIEELKSKISGNINVVAGPSGAGKSSLINELSAEFN------------------ 179
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPL-SGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
Q + +STK +GK+TT + +LL + Y+ADTPGF + L F
Sbjct: 180 ----QAISSISTKLQKGKNTTTYATLLKMPMKDSYIADTPGFTSIKATDIKINELKDYFV 235
Query: 262 E 262
E
Sbjct: 236 E 236
>gi|290968500|ref|ZP_06560039.1| ribosome small subunit-dependent GTPase A [Megasphaera genomosp.
type_1 str. 28L]
gi|290781496|gb|EFD94085.1| ribosome small subunit-dependent GTPase A [Megasphaera genomosp.
type_1 str. 28L]
Length = 285
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 27/230 (11%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
K+K ++LVGD +++ ID +G+IE V R E+ P VANVD ++++ + PKL
Sbjct: 30 KVKTKILVGDMLMITPID--TSKGVIEQVLARKNELRRPAVANVDQIMVVMTPAVPKLNY 87
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH-TWGYEPLFCSVESKLGLDS 152
L + L LNK EL + W ++ + GYE S + G+ +
Sbjct: 88 RLTDTLLASCMYQHLTPILLLNKCELNPH--MTQWYTKYYRQCGYEVYAVSAYTGAGIGA 145
Query: 153 LLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212
+ RL + TV GPSGVGKSSL+ + ED +G V
Sbjct: 146 VTARLDGKMTVFSGPSGVGKSSLLARITGR----------------------EDLHIGAV 183
Query: 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
S K RG+HTTRH ++PL Y+ DTPGF+ +L + + FPE
Sbjct: 184 SKKIQRGRHTTRHAEIIPLREQTYVVDTPGFSAVALASAAPEEIQNLFPE 233
>gi|222151054|ref|YP_002560208.1| hypothetical protein MCCL_0805 [Macrococcus caseolyticus JCSC5402]
gi|222120177|dbj|BAH17512.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 291
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 123/244 (50%), Gaps = 40/244 (16%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I ++ +R+ ++ PPVAN+D ++++ S
Sbjct: 27 CRARGNFRKRGISPLVGDFVEFQVENETD--GYILSIDERNNSMVRPPVANIDRVIVVLS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE-------VLNTWKSRLHTWGYE 138
+P+ L +FLV+ ES GI + + K +LV++E LN ++S GYE
Sbjct: 85 AKEPEFSLNLLDKFLVKVESYGIEPVILVTKKDLVNKEEGLFIERALNHYES----IGYE 140
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
F + ++ D+L++ + TV+ G SGVGKSS IN+L P A
Sbjct: 141 TYFVTNLNEQSYDALVKGI----TVLAGQSGVGKSSFINSL--IPDA------------- 181
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ G +S RGKHTTRHV L+PL GY+ADTPGF+ L + K L
Sbjct: 182 -------NLNTGVISNALNRGKHTTRHVELIPLQ-NGYIADTPGFSSLELDNIDKYELKN 233
Query: 259 TFPE 262
FPE
Sbjct: 234 MFPE 237
>gi|319789685|ref|YP_004151318.1| ribosome small subunit-dependent GTPase A [Thermovibrio
ammonificans HB-1]
gi|317114187|gb|ADU96677.1| ribosome small subunit-dependent GTPase A [Thermovibrio
ammonificans HB-1]
Length = 296
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 119/232 (51%), Gaps = 32/232 (13%)
Query: 36 KRRVLVGDKVVVGSIDWVDRRGM-IENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPF 94
K +V GD +V G + VD IE V +R ++ PP+ANVD ++++ ++ P+ + F
Sbjct: 36 KEKVFAGD-IVEGRV--VDSSTFAIERVKERKNLLVRPPIANVDKVVVVSTLKNPEFQNF 92
Query: 95 ALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFCSVESKLGLD 151
L LV + G+ + NKV+L+D E LN W GY + SVE+ GL
Sbjct: 93 LLDNLLVVYDHLGLDTVVVFNKVDLLDPKEREELNRWVEIYRNAGYPVVTASVETGEGLK 152
Query: 152 SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211
L + L+ T++ GPSGVGKSSLI+ L + R G+
Sbjct: 153 KLREELKGVTSIFAGPSGVGKSSLISKLTGV-----------------------ELRTGQ 189
Query: 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQSLAQTFPE 262
VS K+ RG+HTTR V L+P GG++ D PGF++ L + ++ + FPE
Sbjct: 190 VSRKTERGRHTTREVRLIPFE-GGFIGDAPGFSRVDALNFMEREEVRLHFPE 240
>gi|323489540|ref|ZP_08094767.1| GTPase engC [Planococcus donghaensis MPA1U2]
gi|323396671|gb|EGA89490.1| GTPase engC [Planococcus donghaensis MPA1U2]
Length = 298
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 120/243 (49%), Gaps = 28/243 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + + LVGD V + + ++ G I +V+ R E++ PP+ANVD +L+FS
Sbjct: 27 CRGRGVFRNRQITPLVGDYVDYKADNELE--GTILHVYDRKNELVRPPIANVDQAILVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
QP P L RFL ES I + L K++L+ EE + + + GYE +
Sbjct: 85 AKQPDFHPLLLDRFLTAIESHSIQPVICLTKMDLLKEEEKEKIQQYIKDYEKIGYEVIPT 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
++ D L+ L + +V+ G SGVGKS+++N + S
Sbjct: 145 FIDDPALKDRLMPVLEGKISVLAGQSGVGKSTMLNTILPSL------------------- 185
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S RGKHTTRHV L+ ++ G LADTPGF+ + ++ L+ FPE
Sbjct: 186 ---ELKTDDISKALNRGKHTTRHVELIAVN-NGLLADTPGFSSFDFETMEREELSACFPE 241
Query: 263 VCA 265
A
Sbjct: 242 FAA 244
>gi|126649670|ref|ZP_01721906.1| ribosome-associated GTPase [Bacillus sp. B14905]
gi|126593389|gb|EAZ87334.1| ribosome-associated GTPase [Bacillus sp. B14905]
Length = 294
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 122/245 (49%), Gaps = 27/245 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + LVGD +V S++ G I+ + +R E++ PP+AN+D +L+FS
Sbjct: 25 CRGRGVFRNRGESPLVGD-IVEYSLETEGSDGTIQKILERQNELVRPPIANIDQGILVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFC 142
+ +P L RFLV ES + + L K++L+ + E L + + GY L
Sbjct: 84 VKEPNFNTILLDRFLVVLESFHVHPIICLTKMDLLENNEHEELQRYIADYENMGYTVLQT 143
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + ++ L L+ +TTV+ G SGVGKS+L+N L P L K
Sbjct: 144 YKDEEELVERLQPILKGKTTVLAGQSGVGKSTLLNTLI----------------PELNLK 187
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S GRGKHTTRHV L+ + G LADTPGF+ ++ K+ L FPE
Sbjct: 188 ------TGIISQSLGRGKHTTRHVELIEVC-DGLLADTPGFSSFDFDEIEKEELGACFPE 240
Query: 263 VCAVG 267
+ V
Sbjct: 241 MIRVA 245
>gi|187778902|ref|ZP_02995375.1| hypothetical protein CLOSPO_02497 [Clostridium sporogenes ATCC
15579]
gi|187772527|gb|EDU36329.1| ribosome small subunit-dependent GTPase A [Clostridium sporogenes
ATCC 15579]
Length = 301
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 117/237 (49%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + +ID + +G IE ++ R +E+ P VANV L++FS
Sbjct: 35 CKARGKFRHTELTPMIGDYVEI-TIDK-NNKGAIEKIYDRKSELFRPAVANVTQALVVFS 92
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E + GY+ +F + +
Sbjct: 93 FKDPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEEYKDIIFMIEQAGYDIIFLNAK 152
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 153 EEKNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 190
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE
Sbjct: 191 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPE 246
>gi|148656597|ref|YP_001276802.1| ribosome small subunit-dependent GTPase A [Roseiflexus sp. RS-1]
gi|148568707|gb|ABQ90852.1| ribosome small subunit-dependent GTPase A [Roseiflexus sp. RS-1]
Length = 296
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 126/256 (49%), Gaps = 41/256 (16%)
Query: 24 LLCVVRALLKKIKRR---VLVGDKVVVGSIDWVDRRGMIENVFQRSTEIL---------- 70
L+C +R LKK ++ ++GD V V + G+IE V R T++
Sbjct: 18 LMCTLRGRLKKERQSTDIAVIGDLVEVTPT--MPGHGVIEAVLPRRTKLARRAPASKGVW 75
Query: 71 --DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW 128
D AN++ LL+FS P+ P L R+LV E++ + + NKV+LV E +
Sbjct: 76 KEDVLAANIEQALLVFSCASPEFSPRMLDRYLVLIETSDLDAVIVANKVDLVGEAEAHRL 135
Query: 129 KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
+ Y ++ S + G+D+L +RL + +V+ G SGVGKSSL NA+
Sbjct: 136 FAPYERLEYPVIYTSAVTGYGIDALRERLEGRISVVTGRSGVGKSSLFNAV--------- 186
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS--GGGYLADTPGFNQP 246
+P LG VG +ST +G+HTTR L+PL GGGYLADTPG +
Sbjct: 187 -------QPGLGLA------VGAISTALNKGRHTTRVAELIPLDLPGGGYLADTPGIREL 233
Query: 247 SLLKVTKQSLAQTFPE 262
L + K LA+ F E
Sbjct: 234 GLWRFPKDELARCFRE 249
>gi|281412511|ref|YP_003346590.1| ribosome small subunit-dependent GTPase A [Thermotoga naphthophila
RKU-10]
gi|281373614|gb|ADA67176.1| ribosome small subunit-dependent GTPase A [Thermotoga naphthophila
RKU-10]
Length = 293
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 26/248 (10%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++TG +LC +R + ++ VGD+V + G+IENV R + P VAN
Sbjct: 19 DEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDET--GSGVIENVLHRKNLLTKPHVAN 76
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK--SRLHT 134
VD ++L+ ++ P+ + + +FLV AE + + NK++L DE L + +++
Sbjct: 77 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVFNKMDLYDEADLKKVRELEEIYS 136
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+ +P
Sbjct: 137 ELYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI--NP----------- 183
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
G K RV EVS K RG+HTT LL GGY+ DTPGF + + +
Sbjct: 184 -----GLKL----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEISDIEPE 234
Query: 255 SLAQTFPE 262
L F E
Sbjct: 235 ELKNYFKE 242
>gi|170288908|ref|YP_001739146.1| ribosome small subunit-dependent GTPase A [Thermotoga sp. RQ2]
gi|170176411|gb|ACB09463.1| ribosome small subunit-dependent GTPase A [Thermotoga sp. RQ2]
Length = 293
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 26/248 (10%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++TG +LC +R + ++ VGD+V + G+IENV R + P VAN
Sbjct: 19 DEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDET--GSGVIENVLHRKNLLTKPHVAN 76
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK--SRLHT 134
VD ++L+ ++ P+ + + +FLV AE + + NK++L DE L + +++
Sbjct: 77 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVFNKMDLYDEADLKKVRELEEIYS 136
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+ +P
Sbjct: 137 ELYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI--NP----------- 183
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
G K RV EVS K RG+HTT LL GGY+ DTPGF + + +
Sbjct: 184 -----GLKL----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEISDIEPE 234
Query: 255 SLAQTFPE 262
L F E
Sbjct: 235 ELKNYFKE 242
>gi|148270147|ref|YP_001244607.1| ribosome small subunit-dependent GTPase A [Thermotoga petrophila
RKU-1]
gi|254766842|sp|A5ILF8.1|RSGA_THEP1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|147735691|gb|ABQ47031.1| ribosome small subunit-dependent GTPase A [Thermotoga petrophila
RKU-1]
Length = 295
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 26/248 (10%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++TG +LC +R + ++ VGD+V + G+IENV R + P VAN
Sbjct: 21 DEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDET--GSGVIENVLHRKNLLTKPHVAN 78
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK--SRLHT 134
VD ++L+ ++ P+ + + +FLV AE + + NK++L DE L + +++
Sbjct: 79 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVFNKMDLYDEADLKKVRELEEIYS 138
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+ +P
Sbjct: 139 ELYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI--NP----------- 185
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
G K RV EVS K RG+HTT LL GGY+ DTPGF + + +
Sbjct: 186 -----GLKL----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEISDIEPE 236
Query: 255 SLAQTFPE 262
L F E
Sbjct: 237 ELKNYFKE 244
>gi|169827068|ref|YP_001697226.1| GTPase EngC [Lysinibacillus sphaericus C3-41]
gi|168991556|gb|ACA39096.1| Probable GTPase engC [Lysinibacillus sphaericus C3-41]
Length = 294
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 27/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + LVGD +V S++ G I+ + +R E++ PP+AN+D +L+FS
Sbjct: 25 CRGRGVFRNRGESPLVGD-IVEYSLETEGSDGTIQKILERQNELVRPPIANIDQGILVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFC 142
+ +P L RFLV ES + + L K++L++ + L ++ + GY L
Sbjct: 84 VKEPNFNTILLDRFLVVLESFHVHPIICLTKMDLLENDERTELQSYITDYENMGYTVLQT 143
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + ++ L L+ +TTV+ G SGVGKS+L+N L P L K
Sbjct: 144 YKDEEELVERLQPILKGKTTVLAGQSGVGKSTLLNTLI----------------PELNLK 187
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S GRGKHTTRHV L+ + G LADTPGF+ ++ K+ L FPE
Sbjct: 188 ------TGIISQSLGRGKHTTRHVELIEVC-DGLLADTPGFSSFDFDEIEKEELGACFPE 240
Query: 263 V 263
+
Sbjct: 241 I 241
>gi|354558662|ref|ZP_08977916.1| ribosome biogenesis GTPase RsgA [Desulfitobacterium metallireducens
DSM 15288]
gi|353545724|gb|EHC15174.1| ribosome biogenesis GTPase RsgA [Desulfitobacterium metallireducens
DSM 15288]
Length = 297
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 123/248 (49%), Gaps = 32/248 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + + IE V +R ++ P +ANVD L+F+
Sbjct: 25 CSLRGRFRIQGQEFLTGDRVQI--LPSNGNKATIEKVEERRNSLVRPTIANVDQAFLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-----DEEVLNTWKS--RLHTWGYE 138
+ P+ + L R L++ GI + LNKV+ D N+ S Y+
Sbjct: 83 LVSPRPDLNLLDRLLIQVSEVGIKPVIILNKVDQAEVNSEDATAENSISSLDFYQNLHYD 142
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S + G+ + + L+D+ TV+ GPSGVGKSSL+NAL EP
Sbjct: 143 LIKVSTRTGQGIAEVREHLKDKVTVLAGPSGVGKSSLVNAL----------------EP- 185
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
FE + GE+S K RG+HTTRHV L+ + G G LADTPGF+ L K+ ++ L
Sbjct: 186 ----GFE-LKTGEISRKLKRGRHTTRHVELM-VCGEGLLADTPGFSSLYLPKMKREELTL 239
Query: 259 TFPEVCAV 266
FPE V
Sbjct: 240 FFPEFADV 247
>gi|156742326|ref|YP_001432455.1| ribosome small subunit-dependent GTPase A [Roseiflexus castenholzii
DSM 13941]
gi|156233654|gb|ABU58437.1| ribosome small subunit-dependent GTPase A [Roseiflexus castenholzii
DSM 13941]
Length = 300
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 126/256 (49%), Gaps = 41/256 (16%)
Query: 24 LLCVVRALLKKIKRR---VLVGDKVVVGSIDWVDRRGMIENVFQRSTEIL---------- 70
++C +R LKK ++ ++GD V V + G+IE V R T++
Sbjct: 22 VMCTLRGRLKKERQSTDLAVIGDLVEV--TPTMPGHGVIEAVLPRRTKLARRAPASKGVW 79
Query: 71 --DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW 128
D AN+D LL+FS P+ P L R+LV E++ + + NKV+LV E+
Sbjct: 80 KEDVLAANLDQALLVFSCASPEFSPRMLDRYLVLTETSDLDAVIVANKVDLVGEKEARRL 139
Query: 129 KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
+ Y L+ S + LG+++L +RL + +++ G SGVGKSSL N +
Sbjct: 140 FAPYERLEYPVLYTSAVTGLGINALRERLAGRISIVTGRSGVGKSSLFNVV--------- 190
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS--GGGYLADTPGFNQP 246
+P LG K VG VS +G+HTTR L+PL GGGYLADTPG +
Sbjct: 191 -------QPGLGLK------VGSVSAALNKGRHTTRVAELIPLDLPGGGYLADTPGIREL 237
Query: 247 SLLKVTKQSLAQTFPE 262
L + K LA+ F E
Sbjct: 238 GLWRFPKDELARCFRE 253
>gi|456012699|gb|EMF46387.1| Ribosome small subunit-stimulated GTPase EngC [Planococcus
halocryophilus Or1]
Length = 298
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 28/243 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + + LVGD V + + ++ G I +V++R E++ PP+ANVD +L+FS
Sbjct: 27 CRGRGVFRNRQITPLVGDYVDYKADNELE--GTILHVYERKNELVRPPIANVDQAILVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+ QP P L RFL ES I + L K++L+ E E + + + GYE +
Sbjct: 85 VKQPDFHPLLLDRFLTAIESHSIQPIICLTKMDLLKEEEKEKIQHYIADYEKIGYEVIPT 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
++ + L+ L + +V+ G SGVGKS+++N + S
Sbjct: 145 FIDDPALKNRLMPVLEGKISVLAGQSGVGKSTMLNTILPSL------------------- 185
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S RGKHTTRHV L+ ++ G LADTPGF+ + ++ L+ FPE
Sbjct: 186 ---ELKTDDISKALNRGKHTTRHVELIAVN-NGLLADTPGFSSFDFETMEREELSACFPE 241
Query: 263 VCA 265
A
Sbjct: 242 FAA 244
>gi|284113714|ref|ZP_06386624.1| GTPase EngC [Candidatus Poribacteria sp. WGA-A3]
gi|283829640|gb|EFC33972.1| GTPase EngC [Candidatus Poribacteria sp. WGA-A3]
Length = 324
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 124/264 (46%), Gaps = 48/264 (18%)
Query: 24 LLCVVRALLKKIKR----RVLVGDKVVVGSIDWVD------RRGMIENVFQRST------ 67
L C +R LK+ R R L D V VG DWV G+IE++ R T
Sbjct: 36 LRCTLRGTLKRRNRSETGRRLYADPVAVG--DWVIFTQLDMEEGVIEDILPRRTKFSRQY 93
Query: 68 -----EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE 122
+I VAN ++ + S P L L RFL+ AE+ + + LNK++LVDE
Sbjct: 94 AGRHEDIEQVIVANAHQIVAVVSTLMPPLNFRTLDRFLILAEAGDMEAVVCLNKMDLVDE 153
Query: 123 EVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ + GY ++ S+ LD+L L+D+ +VIVG SGVGKSSL+NAL
Sbjct: 154 AQRTELTATFAVYEKLGYGVIYTSINVPESLDALRNALKDKFSVIVGASGVGKSSLLNAL 213
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
+ S D R GEV ++ +G+HTT V PL GG +AD
Sbjct: 214 QPSL----------------------DLRTGEVGIRTQKGRHTTTLVERFPLDIGGEVAD 251
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEV 263
TPG + L V ++L FPE+
Sbjct: 252 TPGIREVGLWGVDTENLEYYFPEM 275
>gi|227500115|ref|ZP_03930186.1| possible GTP-binding protein EngC [Anaerococcus tetradius ATCC
35098]
gi|227217830|gb|EEI83127.1| possible GTP-binding protein EngC [Anaerococcus tetradius ATCC
35098]
Length = 290
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 29/243 (11%)
Query: 2 RVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIEN 61
++I Q E + C+DKT + R + K + LVGD V++ D D + I +
Sbjct: 5 KIIKSQKELYYVA-CDDKT---FMAKARGNFRVKKIKPLVGDNVIID--DLTDGKAYITD 58
Query: 62 VFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ +R EI P ++N+D +LL ++ P L + L ++L E + + + L+K++L D
Sbjct: 59 ICERKNEIKRPNISNIDQILLFATIKNPPLNIYNLDKYLAMCEYKHMEVVIILSKIDLCD 118
Query: 122 EEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
E ++ + + GY+ + + +L L+D+T+ + G SGVGKS+ +N L
Sbjct: 119 ESEIDYFTNIYKKIGYKLVCIDNYCNFPKEEILDLLKDKTSAVSGASGVGKSTFLNNL-- 176
Query: 182 SPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241
VD+ D +G +S KS RGK+TTRH + ++ +L DTP
Sbjct: 177 ---------VDH------------DVEIGSISEKSKRGKNTTRHTEIFKIADNTFLFDTP 215
Query: 242 GFN 244
GF+
Sbjct: 216 GFD 218
>gi|328957302|ref|YP_004374688.1| ribosome-associated GTPase [Carnobacterium sp. 17-4]
gi|328673626|gb|AEB29672.1| ribosome-associated GTPase [Carnobacterium sp. 17-4]
Length = 300
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 31/243 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R +K + LVGD V+ S + + G+++ + R E++ PPVANVD +++ S +
Sbjct: 28 RGNFRKRELTPLVGDYVLFESGNL--KEGVVQELLPRKNELVRPPVANVDIGIVVMSAIE 85
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVE 145
P L RFLV ES GI + ++K++L+ +E+L K + + GY P+ +
Sbjct: 86 PNFSTNLLDRFLVTLESKGIQAIIYISKIDLLTDELLQQLKEKERAYEKIGY-PIIVPEQ 144
Query: 146 --SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+K L+ L ++ +V +G SG GKS+L+N++ A D+
Sbjct: 145 DDNKKSLEELTSYFPNKLSVFMGQSGAGKSTLLNSI--------APDL------------ 184
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ + E+S+ GRGKHTTRHV LLPL G +ADTPGF+ L++ + L+ FP+
Sbjct: 185 --ELKTAEISSSLGRGKHTTRHVELLPLY-EGLVADTPGFSSIDFLELEAEELSACFPDF 241
Query: 264 CAV 266
V
Sbjct: 242 VEV 244
>gi|258645362|ref|ZP_05732831.1| ribosome small subunit-dependent GTPase A [Dialister invisus DSM
15470]
gi|260402711|gb|EEW96258.1| ribosome small subunit-dependent GTPase A [Dialister invisus DSM
15470]
Length = 288
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 112/218 (51%), Gaps = 26/218 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R LKK K VLVGD V + + G+I V++R ++ PPV+NVD L+L+ S
Sbjct: 25 CRSRGALKK-KTDVLVGDHVEYEANKGFE--GVITKVYKRKNQLYRPPVSNVDELVLVSS 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P L L + ++ AE+ +P + +NK +L DE GY ++ S
Sbjct: 82 ICTPDLNRGLLDKMILLAENANMPPVICINKCDL-DEVSAKRVCEEYEKAGYPCVYTSTY 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ GLD L + LR + V GPSGVGKSS++ N+F LG +F
Sbjct: 141 TQDGLDDLKKLLRGRIIVFSGPSGVGKSSIL----------------NYF---LGRSYFT 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
G VS +G+G+ TTRH L+P G +L DTPG+
Sbjct: 182 S---GAVSAYTGKGRATTRHAELVPFKTGVFLMDTPGY 216
>gi|402310148|ref|ZP_10829116.1| ribosome small subunit-dependent GTPase A [Eubacterium sp. AS15]
gi|400369390|gb|EJP22390.1| ribosome small subunit-dependent GTPase A [Eubacterium sp. AS15]
Length = 293
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 29/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R KK + ++VGD V + D +D +I+ V+++ ++ P VAN+ L+L+FS
Sbjct: 21 CKPRGTFKKENKSIIVGDYVDITITDEIDNEAVIDFVYEQKNMLIRPSVANITKLILVFS 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+ +PKL + + FLV A+ I + +K +L DE+ ++K + + GY+ +
Sbjct: 81 VMEPKLNLYIIDSFLVVAKKNNIDAVICFSKTDL-DED--QSYKEAVKIYKDIGYKTVEI 137
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + +G++ L ++ V+ GPSG GKSSLIN L + +
Sbjct: 138 SSVNNIGIEELKSKISGNINVVAGPSGAGKSSLINELSAEFN------------------ 179
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPL-SGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
Q + +STK +GK+TT + +LL + Y+ADTPGF + L F
Sbjct: 180 ----QAISSISTKLQKGKNTTTYATLLKMPMKDSYIADTPGFTSIKATDIKINELKDYFV 235
Query: 262 E 262
E
Sbjct: 236 E 236
>gi|381183022|ref|ZP_09891791.1| GTPase RsgA [Listeriaceae bacterium TTU M1-001]
gi|380317080|gb|EIA20430.1| GTPase RsgA [Listeriaceae bacterium TTU M1-001]
Length = 257
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 30/227 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD VV + + D G I ++ R E++ PPVAN+D +L+FS +P RF
Sbjct: 4 LVGDDVVFQAENDTD--GYILDILPRENELIRPPVANIDIAILVFSAVEPDFSTNLTDRF 61
Query: 100 LVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156
LV E I + ++K++L EE + ++ GYE S++ ++L+
Sbjct: 62 LVAIEKEDIRPVIGISKMDLATEEEKRAIEKYRDIYENAGYEVFLTG--SEVDKTAILEL 119
Query: 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
+ +T VI G SGVGKS+ +N L P L K GE+ST
Sbjct: 120 IDGKTAVIAGQSGVGKSTFLNQLN----------------PDLTLK------TGEISTSL 157
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
GRG+HTTRHV LLP+ G G +ADTPGF+ + ++L FPE+
Sbjct: 158 GRGRHTTRHVELLPI-GDGLIADTPGFSSIEWDGLEPENLQFCFPEI 203
>gi|87309824|ref|ZP_01091958.1| hypothetical protein DSM3645_03393 [Blastopirellula marina DSM
3645]
gi|87287588|gb|EAQ79488.1| hypothetical protein DSM3645_03393 [Blastopirellula marina DSM
3645]
Length = 257
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 109/206 (52%), Gaps = 25/206 (12%)
Query: 55 RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLAL 114
R G++ +R ++ VANVD LL++ S +P L+P + R+LV AE GI + +
Sbjct: 26 RYGILCRASKRRQHVI---VANVDQLLIVASAAEPYLKPNLIDRYLVTAEKAGITPVICI 82
Query: 115 NKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174
NKV+L+D L GY+ + S +G++ L +RD+ +V+ G SGVGKS+
Sbjct: 83 NKVDLIDPADLQPLVGVYGQMGYQVILLSATEGIGVERLRAAVRDRASVLSGQSGVGKST 142
Query: 175 LINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234
++NA+ EP L + RVG VS + +G+HTT SL+PL+ G
Sbjct: 143 ILNAI----------------EPGL------NLRVGHVSETTDKGRHTTTTSSLVPLAAG 180
Query: 235 GYLADTPGFNQPSLLKVTKQSLAQTF 260
G++ DTPG Q L V + +A F
Sbjct: 181 GHVVDTPGIRQFQLWDVIPEEVAGYF 206
>gi|163790819|ref|ZP_02185244.1| hypothetical protein CAT7_07168 [Carnobacterium sp. AT7]
gi|159873887|gb|EDP67966.1| hypothetical protein CAT7_07168 [Carnobacterium sp. AT7]
Length = 300
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 124/233 (53%), Gaps = 33/233 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD V+ S + + G+++ + R E++ PPVANVD +++ S +P L RF
Sbjct: 39 LVGDYVLFESGNL--KEGVVQELLPRKNELVRPPVANVDIGVVVMSAIEPNFSTNLLDRF 96
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV------ESKLGLDSL 153
LV ES I + ++K++L+ +E L K + YE + S+ ++K L+ L
Sbjct: 97 LVTLESKRIQAIIYISKIDLLTDETLQQIKEKQRE--YEKIGYSIVVPEQKDNKKSLEEL 154
Query: 154 LQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213
+ D+ TV +G SG GKS+L+N++ A D+ +L + E+S
Sbjct: 155 VSYFPDKLTVFMGQSGAGKSTLLNSI--------APDL------LL--------KTAEIS 192
Query: 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
+ GRGKHTTRHV LLPL G +ADTPGF+ L++ + L+ FPE V
Sbjct: 193 SSLGRGKHTTRHVELLPLY-NGLVADTPGFSSIDFLELEPEELSACFPEFVEV 244
>gi|169333682|ref|ZP_02860875.1| hypothetical protein ANASTE_00066 [Anaerofustis stercorihominis DSM
17244]
gi|169259676|gb|EDS73642.1| ribosome small subunit-dependent GTPase A [Anaerofustis
stercorihominis DSM 17244]
Length = 292
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 117/234 (50%), Gaps = 24/234 (10%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R + +K K VGD+V+ +++ G IE + +R + ++ P ++NVD+++++ ++ +
Sbjct: 30 RGIFRKQKITPTVGDEVLFTAVNT--DEGSIEEIIERKSLLIRPSISNVDNIIIVCAVKE 87
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
P + F L + ++ A LT+ NK +L D+ + K G+ +F S +
Sbjct: 88 PDISFFLLDKMIINAGIKNADLTICFNKCDLADDTFKDYLKEEYKNSGFNLIFTSNVTGE 147
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
G+D + L+D+++V +G SG GKSSLIN+L FE +
Sbjct: 148 GIDEVKSLLKDKSSVFMGVSGAGKSSLINSL---------------FEGY-------NLE 185
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
VS K RG+HTTRH L ++ADTPGF+ + V K+ L + E
Sbjct: 186 TSHVSRKIKRGRHTTRHSELFMEDENTFIADTPGFSSLEVFDVEKEDLYHYYNE 239
>gi|345021915|ref|ZP_08785528.1| GTPase RsgA [Ornithinibacillus scapharcae TW25]
Length = 293
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 122/242 (50%), Gaps = 30/242 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDR-RGMIENVFQRSTEILDPPVANVDHLLLLF 84
C R + +K LVGD V S D + G I V R+ E++ PP+AN+ +++
Sbjct: 25 CKSRGVFRKKNITPLVGDYV---SFDHREENEGYITEVKVRTNELIRPPIANITQAIIVS 81
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEV--LNTWKSRLHTWGYEPLF 141
S P L RFLV E+ GI + + K +L+ DE++ L +++ GY+
Sbjct: 82 SATMPDFSTTLLDRFLVLIEAKGITPIIFITKTDLLTDEQIVDLKEYQADYEGIGYKVEM 141
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + + + L+DQ TVI G SGVGKSSLINAL SP E +L
Sbjct: 142 FSAKDPKEMVRIKDYLKDQVTVIAGQSGVGKSSLINAL--SP------------ESLL-- 185
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ ++S GRGKHTTRHV L+ ++ G +ADTPGF+ ++ L+ FP
Sbjct: 186 ------KTADISKSLGRGKHTTRHVELIEIN-NGLVADTPGFSALDFSEIEADELSSCFP 238
Query: 262 EV 263
E+
Sbjct: 239 EM 240
>gi|218132882|ref|ZP_03461686.1| hypothetical protein BACPEC_00743 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991755|gb|EEC57759.1| ribosome small subunit-dependent GTPase A [[Bacteroides]
pectinophilus ATCC 43243]
Length = 293
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 109/238 (45%), Gaps = 23/238 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +L+ K + LVGD V + +D G I +V R ++ P VANVD L++F+
Sbjct: 25 CKAKGILRNRKIKPLVGDNVDIDILDDEKFLGNINDVLPRKNSLIRPAVANVDQALVVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P L RF+V E I + +K +L + L G F S
Sbjct: 85 VHRPAPNYNLLDRFIVMMEKHDIETVICFSKKDLAKDSQLAQMADIYAGCGCRVHFISTV 144
Query: 146 SKLGLDSLLQR-LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+K G+D +++ + +TTV GPSGVGKSSL N L S
Sbjct: 145 NKEGIDDIIRPIIAGKTTVFAGPSGVGKSSLTNELLSQSR-------------------- 184
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K GRG+HTTRH ++ + G Y+ DTPGF + + Q L F E
Sbjct: 185 --METGAVSEKIGRGRHTTRHSEIINIGGDTYIMDTPGFTSFYVSDIEAQDLRFYFEE 240
>gi|389815936|ref|ZP_10207173.1| GTPase EngC [Planococcus antarcticus DSM 14505]
gi|388465430|gb|EIM07747.1| GTPase EngC [Planococcus antarcticus DSM 14505]
Length = 298
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 28/243 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + + LVGD V + + D G I +V++R E++ PP+ NVD +L+FS
Sbjct: 27 CRGRGVFRNRQITPLVGDYVDYKADN--DLEGTILHVYERKNELVRPPITNVDQAILVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPLFC 142
QP P L RFL ES I + L K++L+ ++E + + + GYE +
Sbjct: 85 AKQPDFHPLLLDRFLTAIESNSIQPIICLTKMDLLKDSEKEKIQHYIADYEKIGYEVIPT 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + L+ L + +V+ G SGVGKS+L+N + S
Sbjct: 145 FINDHALKERLMPVLEGKISVLAGQSGVGKSTLLNTILPSL------------------- 185
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S RGKHTTRHV L+ ++ G LADTPGF+ + ++ L+ FPE
Sbjct: 186 ---ELKTDDISKALNRGKHTTRHVELIAVN-NGLLADTPGFSSFDFETMEREELSACFPE 241
Query: 263 VCA 265
A
Sbjct: 242 FAA 244
>gi|334128600|ref|ZP_08502483.1| ribosome small subunit-dependent GTPase A [Centipeda periodontii
DSM 2778]
gi|333386691|gb|EGK57901.1| ribosome small subunit-dependent GTPase A [Centipeda periodontii
DSM 2778]
Length = 291
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 118/242 (48%), Gaps = 29/242 (11%)
Query: 24 LLCVVRALLKKIKRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
L C +R +KK + + + GD V I + G+IE + R+ + P VAN+ ++
Sbjct: 25 LFCKLRGRVKKGRSDMGLVPGDIVTFERISAGE--GVIERIEARTNLLQRPRVANLTQIV 82
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
+ + P P ++RFLV AE +G+ + L +NK++L + ++ + GY L
Sbjct: 83 ITVAAASPDPHPLVVSRFLVLAELSGVKKIVLCVNKMDLCTGDP-ASYLAEYEAAGYSVL 141
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S GLD L L + +V+ GPSG GKSSL+NAL +P L
Sbjct: 142 RVSAAGGTGLDDLRAHLAGEISVLAGPSGAGKSSLLNAL----------------DPTLA 185
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
G VS K GRG+HTTR LLP GGY+ DTPGF Q + + L+ F
Sbjct: 186 LA------TGVVSEKIGRGRHTTRRAELLPFM-GGYVVDTPGFTQQEITDTAPEELSDCF 238
Query: 261 PE 262
PE
Sbjct: 239 PE 240
>gi|407796650|ref|ZP_11143603.1| GTPase RsgA [Salimicrobium sp. MJ3]
gi|407019166|gb|EKE31885.1| GTPase RsgA [Salimicrobium sp. MJ3]
Length = 288
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 121/239 (50%), Gaps = 29/239 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R L + K LVGD V D R + +V +RS E++ PP+AN+D +++ S
Sbjct: 25 CRGRGLFRNKKISPLVGDVV---QFDPEQR--YLLSVEERSNELIRPPIANIDQAIVVVS 79
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-EEVLNTWKSRLHTWGYEPLFCSV 144
+PK L RFLV E+ I + ++K + V E + ++ GYE +
Sbjct: 80 AVEPKFNSRLLDRFLVLIEAKMINPVIVISKQDRVTASEDIAKYRRIYEQAGYEVILTDP 139
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
++ L + + +TTVI G SGVGKS+L+NAL+S S +
Sbjct: 140 GNEEALIRVKDLFKSKTTVIAGQSGVGKSTLLNALQS-------------------SLFL 180
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
E GE+S GRGKHTTR V L ++ GG +ADTPGF+ VT SLA+ FPE+
Sbjct: 181 E---TGEISRSLGRGKHTTRRVELFSIN-GGLVADTPGFSSLDFDPVTSVSLAECFPEI 235
>gi|347549215|ref|YP_004855543.1| hypothetical protein LIV_1795 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982286|emb|CBW86280.1| Putative unknown protein [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 291
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 116/241 (48%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDVAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K T GYE
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLATEAEKEQIALYKEVYETIGYEVFET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NQEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+ST GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISTSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 V 263
+
Sbjct: 238 I 238
>gi|386714215|ref|YP_006180538.1| ribosome-associated GTPase [Halobacillus halophilus DSM 2266]
gi|384073771|emb|CCG45264.1| ribosome-associated GTPase [Halobacillus halophilus DSM 2266]
Length = 293
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 117/244 (47%), Gaps = 28/244 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K K LVGD V + + G I ++ +R E + PP+ANVD L++ S
Sbjct: 25 CRGRGNFRKKKVSPLVGDTVEFKAEKQDE--GYILSIDKRKNEFVRPPIANVDQALIVTS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN---TWKSRLHTWGYEPLFC 142
P+ L RFLV E+ I + ++K++ +DE N ++ + GY +
Sbjct: 83 AANPEFNALLLDRFLVLVEAKRIEPFVVISKMDQLDEGRANDMKVYQQMYESVGYPVILS 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+V ++ + L +TTVI G SGVGKSSL+N + P S D
Sbjct: 143 AVNDAESMEQIRAHLAGRTTVIAGQSGVGKSSLLNTI--DPRLSIDTD------------ 188
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S GRGKHTTRHV L +S GG +ADTPGF+ + + L + FPE
Sbjct: 189 --------EISKSLGRGKHTTRHVELYEIS-GGLVADTPGFSSLEFGDLQLEQLPECFPE 239
Query: 263 VCAV 266
V
Sbjct: 240 FVQV 243
>gi|289435162|ref|YP_003465034.1| GTPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171406|emb|CBH27950.1| GTPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 291
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 116/241 (48%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDVAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K T GYE
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLATEAEKEQIALYKEVYETIGYEVFET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NEEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+ST GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISTSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 V 263
+
Sbjct: 238 I 238
>gi|417003269|ref|ZP_11942340.1| ribosome small subunit-dependent GTPase A [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325478745|gb|EGC81856.1| ribosome small subunit-dependent GTPase A [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 290
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 26/240 (10%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
L+C R +K + LVGD V++ + D G I + QRS EI P +ANVD +LL
Sbjct: 23 LMCKARGNFRKKGIKPLVGDNVLIEYLS--DGEGYITQICQRSNEIKRPNIANVDQILLF 80
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++ P L + L ++L E GI + + L+K++L D++ ++ + GY+ L
Sbjct: 81 ATIKNPPLNLYNLDKYLAMCEYIGIDVCMILSKIDLADQKEIDDFVKIYEPIGYKILCLD 140
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
D ++ L+ +T+ + G SGVGKS+ N L D+
Sbjct: 141 NYDDFPEDEIMSVLKGKTSAVSGASGVGKSTFSNNL---------VDI------------ 179
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ-SLAQTFPE 262
+ +G +S KS RGK+TTRH + ++ +L DTPGF+ + + + L TF E
Sbjct: 180 --NVEIGSISDKSKRGKNTTRHTEIFKINENTFLFDTPGFDSFDIDFIEDEVELKDTFLE 237
>gi|427405961|ref|ZP_18896166.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. F0473]
gi|425708802|gb|EKU71841.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. F0473]
Length = 290
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 121/242 (50%), Gaps = 29/242 (11%)
Query: 24 LLCVVRALLKKIK--RRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+ C +R +KK + R ++ GD V +D + G++E + +R ++ P VAN+ ++
Sbjct: 24 VACKLRGRMKKGRNDRGIVPGDIVTFDRMDAEE--GVVERIEERENLLVRPRVANLTQII 81
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
+ + P P ++RFLV AE +G + L +NK++L + + + GY L
Sbjct: 82 VTVAAAAPDPHPLVVSRFLVLAERSGAHKIVLCVNKIDLCSGDP-KSIAADYACAGYPVL 140
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S ++ G+ +L L + TV GPSG GKSSL+N + +P L
Sbjct: 141 CVSAQTGAGVAALRDLLAGEITVFAGPSGTGKSSLLNTV----------------DPALA 184
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
G VS K GRG+HTTR L+P + GG++ DTPGF Q L +T + L F
Sbjct: 185 LA------TGTVSEKIGRGRHTTRRAELIPYA-GGFVVDTPGFTQQELSDLTPEELTACF 237
Query: 261 PE 262
PE
Sbjct: 238 PE 239
>gi|358067535|ref|ZP_09154013.1| ribosome small subunit-dependent GTPase A [Johnsonella ignava ATCC
51276]
gi|356694188|gb|EHI55851.1| ribosome small subunit-dependent GTPase A [Johnsonella ignava ATCC
51276]
Length = 289
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 24/242 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + L ++ + LVGD +D + G I N+ R E+L P AN+D +L + S
Sbjct: 24 CRAKGLFRRNDIKPLVGDNAEFEILDAAGKNGNIINILPRKNELLRPAAANIDIILTVLS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+PK + L ++L+ + G + NK +L + + + GYE + S
Sbjct: 84 FFKPKPQLCMLDKYLISIKLQGFDAAILWNKNDLSPD--IPDYVKAYKRAGYENIVISAS 141
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G++ L L+ +TT+ GPSGVGKSS+ N R P A
Sbjct: 142 DGYGMEDLRAFLKGKTTLFAGPSGVGKSSITN--RLFPMA-------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA 265
D + GE+S K RGKHTTRH + + + DTPGF SL + K+SL + +PE
Sbjct: 180 DMQTGEISRKIERGKHTTRHSQVFIVDKTTCIFDTPGFTSVSLEGLEKESLREYYPEFTK 239
Query: 266 VG 267
G
Sbjct: 240 PG 241
>gi|315303722|ref|ZP_07874234.1| ribosome small subunit-dependent GTPase A [Listeria ivanovii FSL
F6-596]
gi|313627909|gb|EFR96530.1| ribosome small subunit-dependent GTPase A [Listeria ivanovii FSL
F6-596]
Length = 291
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 116/241 (48%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDVAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K T GYE
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLTTEAEKEQIALYKEVYETIGYEVFET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NQEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+ST GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISTSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 V 263
+
Sbjct: 238 I 238
>gi|381395930|ref|ZP_09921624.1| ribosome-associated GTPase [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379328495|dbj|GAB56757.1| ribosome-associated GTPase [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 349
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 121/251 (48%), Gaps = 40/251 (15%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRR--GMIENVFQRSTEI--------LDPPVA 75
C +R +K V+ GD+VV ++ R G+IE V R +E+ L P A
Sbjct: 70 CYIRRTIKS----VVCGDQVVFRPSTTLEERDRGIIEVVIDRKSELSRPDYYDGLKPIAA 125
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW 135
N+D ++++ S+ P L + R+LV E I + +NKVEL+ E L + L +
Sbjct: 126 NIDQIIVVGSI-VPALSTHIIDRYLVACEHARISPIIVINKVELLTNEALVQVEKDLEVY 184
Query: 136 ---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY + S S+ GLD+L L+D+ V+VG SGVGKSSLIN L +
Sbjct: 185 TQIGYRVIMASCVSQAGLDALSSVLKDKVNVLVGQSGVGKSSLINQLLPDSQET------ 238
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
VGEVS SG G+HTT L+P S GG L D+PG + L +
Sbjct: 239 ----------------VGEVSGNSGLGQHTTTAAKLIPFSLGGELIDSPGVREFGLWHLP 282
Query: 253 KQSLAQTFPEV 263
Q + Q F E+
Sbjct: 283 VQDITQGFVEL 293
>gi|239618305|ref|YP_002941627.1| ribosome small subunit-dependent GTPase A [Kosmotoga olearia TBF
19.5.1]
gi|239507136|gb|ACR80623.1| ribosome small subunit-dependent GTPase A [Kosmotoga olearia TBF
19.5.1]
Length = 303
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 127/259 (49%), Gaps = 30/259 (11%)
Query: 11 SRTSDCND-KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEI 69
SRT D T +C + K R +VGD ++ I+ + G +EN+ R E+
Sbjct: 15 SRTMVVADLHTKKRYICNMPGRFKLQGIRPIVGD--IIEFIETTESMGRVENILPRRNEL 72
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
L P +AN+D ++L+ + +P + + + RFLV AE +G+P + +NK +L+ + K
Sbjct: 73 LRPRIANIDQIILVTCLKEPTVPLYIVDRFLVLAEHSGLPTVIVVNKTDLLTSR--DPLK 130
Query: 130 SRLHTWG--YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASD 187
H +G Y L S + +D L + + + + + G SGVGKSSL+NA+ +P S
Sbjct: 131 KFYHIYGEYYNILEVSAKEGTNIDLLKEIFKGKVSAMAGMSGVGKSSLLNAI--NPGLS- 187
Query: 188 AADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPS 247
+ E+ST+ RGKHTT + LL GGY+ADTPGF
Sbjct: 188 -------------------LKTSEISTRLDRGKHTTTYSELLEFDFGGYVADTPGFASLE 228
Query: 248 L-LKVTKQSLAQTFPEVCA 265
L + Q L F ++ A
Sbjct: 229 LPYDMEPQELQNFFRDISA 247
>gi|168188133|ref|ZP_02622768.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum C
str. Eklund]
gi|169294033|gb|EDS76166.1| ribosome small subunit-dependent GTPase A [Clostridium botulinum C
str. Eklund]
Length = 290
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 115/237 (48%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + K +VGD+V++ D D G IE + +R ++ P VAN+ ++F+
Sbjct: 24 CKARGKFRNKKLTPMVGDRVIITPND--DNYGAIEEISKRENYLIRPQVANISQAFIVFA 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FL++ E I + NK++L + + + GYE +F +
Sbjct: 82 LKNPDVNLDLLNKFLIQCELKNIKSIVCFNKIDLCADYKNHEAVKMVSDAGYEYIFLKAK 141
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ L+ L +L+ V GPSGVGKS+++N L +G + E
Sbjct: 142 EEDELEELRGKLKGNINVFCGPSGVGKSTILNKL-------------------VGKEVME 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S + RGKHTTRH L+ ++ G++ DTPGF+ L +K+ L FPE
Sbjct: 183 ---TGIISERLKRGKHTTRHSELVEVN-NGFIVDTPGFSTLDLKFDSKEELKDYFPE 235
>gi|310779113|ref|YP_003967446.1| ribosome small subunit-dependent GTPase A [Ilyobacter polytropus
DSM 2926]
gi|309748436|gb|ADO83098.1| ribosome small subunit-dependent GTPase A [Ilyobacter polytropus
DSM 2926]
Length = 284
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 116/241 (48%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R +LKK R+ D +VG I I VF+R I P VAN+D++++ FS
Sbjct: 16 CRLRGILKKTDRK----DNCIVGDIVEFSEDCSITKVFERKNIIHRPLVANIDYIVIQFS 71
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL---HTWGYEPLFC 142
P+L+ + ++ + I + +NK++LV+E + K+ L + F
Sbjct: 72 AMDPRLDYERINILILNSYYHRIKPVIIINKIDLVEESEIEEIKNNLDYLKALDIDLFFV 131
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +G++ + ++ T GPSGVGKSS++N L+
Sbjct: 132 STAENIGIEEVKSYIQGHVTAFGGPSGVGKSSILNLLQEGTTL----------------- 174
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFP 261
+VGE S K RGKHTTR +LLPL G++ DTPGF+ L +++ Q L FP
Sbjct: 175 -----KVGETSRKLKRGKHTTRATTLLPLKEEGFVIDTPGFSSVDLPEISNVQELIDLFP 229
Query: 262 E 262
E
Sbjct: 230 E 230
>gi|312898696|ref|ZP_07758086.1| ribosome small subunit-dependent GTPase A [Megasphaera
micronuciformis F0359]
gi|310620615|gb|EFQ04185.1| ribosome small subunit-dependent GTPase A [Megasphaera
micronuciformis F0359]
Length = 284
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 110/230 (47%), Gaps = 26/230 (11%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
KIK ++ VGDK+ + D +G+IE + R + P +ANVD ++++ + P
Sbjct: 31 KIKEKIFVGDKLEFTATDA--GKGIIEKILPRFNLLKRPTIANVDAMVIVMAAASPDPNK 88
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSL 153
+ + L+ E G+ L NK +L ++ + + + GY S + GLD L
Sbjct: 89 TLVDKMLMTCEHGGLTPVLCFNKCDL-SKDTGHEYAAYYRQCGYTVYLVSAATGTGLDEL 147
Query: 154 LQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213
Q L + T GPSGVGKSSL+ A+ ++ VGEVS
Sbjct: 148 KQGLSGKVTAFAGPSGVGKSSLLTAIAG-----------------------KELHVGEVS 184
Query: 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
K GRG+HTTRH ++ + Y+ DTPGF+ + +++A P++
Sbjct: 185 RKIGRGRHTTRHSEIIRVDNNTYVIDTPGFSALDFAHMEAKAIAALMPDI 234
>gi|154497987|ref|ZP_02036365.1| hypothetical protein BACCAP_01967 [Bacteroides capillosus ATCC
29799]
gi|150272977|gb|EDN00134.1| ribosome small subunit-dependent GTPase A [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 299
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 117/250 (46%), Gaps = 31/250 (12%)
Query: 17 NDKTGVE-LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
+D++G C R + K LVGD+V + D G ++ + R + P VA
Sbjct: 17 DDRSGAAPTACRARGRFRHAKISPLVGDRVRFTPLP--DGSGAVDEILPRRNQFQRPAVA 74
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW 135
N+D ++++ S P +PF + R + A G + LNK +L + L +
Sbjct: 75 NIDQMVIIASGAIPVTDPFLIDRMISLASWKGCESIVCLNKCDLNSAQSLYEI---YRSA 131
Query: 136 GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
G+ L S E+ G+D L + + + + G SGVGKSS++NAL
Sbjct: 132 GFTTLRVSAETGEGIDELAEIIAGKVSAFTGNSGVGKSSILNAL---------------- 175
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPG---FNQPSLLKVT 252
EP G VGEVS K GRG+HTTRHV L L G +ADTPG F+ +
Sbjct: 176 EPGFGLP------VGEVSDKLGRGRHTTRHVELFRLKNGAIVADTPGFSSFDTEQMEGCR 229
Query: 253 KQSLAQTFPE 262
K+ LA TF E
Sbjct: 230 KEDLAATFRE 239
>gi|312143906|ref|YP_003995352.1| ribosome small subunit-dependent GTPase A [Halanaerobium
hydrogeniformans]
gi|311904557|gb|ADQ14998.1| ribosome small subunit-dependent GTPase A [Halanaerobium
hydrogeniformans]
Length = 286
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 123/247 (49%), Gaps = 39/247 (15%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R +I+ ++ GD V + + IE+ R + P +ANVD +L++ S
Sbjct: 25 CSIRG---RIQEKLYPGDYVKINKEELT-----IEDFLPRKNLLKRPKIANVDQVLIMHS 76
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+ +P+ + L RF++ ES+G + +NK+EL + +K + + GY+ F
Sbjct: 77 LKKPEFKSSLLDRFILLVESSGFEPLIVINKIELAEA----GYKRQFDDYKKAGYQVYFI 132
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SV+ L + LL+ L + V+ GPSGVGKSS +N E I G+
Sbjct: 133 SVKENLNFEPLLKTLDKKVNVLTGPSGVGKSSFLN------------------EIIKGA- 173
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL--LKVTKQSLAQTF 260
D + VS K +G HTTR V LL L G++ADTPGF+ S L + ++L+ F
Sbjct: 174 ---DLKTASVSKKLKKGVHTTRLVELLSLENKGWIADTPGFSSMSKVDLDIEAENLSWYF 230
Query: 261 PEVCAVG 267
PE+ +
Sbjct: 231 PEIAQLN 237
>gi|422419435|ref|ZP_16496390.1| ribosome small subunit-dependent GTPase A [Listeria seeligeri FSL
N1-067]
gi|422422523|ref|ZP_16499476.1| ribosome small subunit-dependent GTPase A [Listeria seeligeri FSL
S4-171]
gi|313632751|gb|EFR99719.1| ribosome small subunit-dependent GTPase A [Listeria seeligeri FSL
N1-067]
gi|313637328|gb|EFS02813.1| ribosome small subunit-dependent GTPase A [Listeria seeligeri FSL
S4-171]
Length = 291
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 116/241 (48%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDVAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K T GYE
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLATEAEKEQIALYKEVYETIGYEVFET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L +
Sbjct: 143 NEEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNNDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+ST GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISTSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 V 263
+
Sbjct: 238 I 238
>gi|373114327|ref|ZP_09528540.1| ribosome small subunit-dependent GTPase A [Fusobacterium
necrophorum subsp. funduliforme 1_1_36S]
gi|371652321|gb|EHO17737.1| ribosome small subunit-dependent GTPase A [Fusobacterium
necrophorum subsp. funduliforme 1_1_36S]
Length = 254
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 112/234 (47%), Gaps = 33/234 (14%)
Query: 51 DWVD--RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI 108
DWV+ I V+ R + P VAN+D+L + F+ P L+ + L L+ + I
Sbjct: 4 DWVEISEENTILEVYPRKNRLTRPVVANIDYLAIQFAAKNPVLDFYRLHMLLLHSMYEKI 63
Query: 109 PLTLALNKVELVDEEVLNTWKSR---LHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIV 165
+ +NK++L+ E L ++ + L F S + + G+++L Q +D+ T I
Sbjct: 64 RPCVIINKIDLLTETELEEFRKQFDFLQALSIPLFFISQKEQKGIEALKQFFQDKVTAIG 123
Query: 166 GPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225
GPSGVGKSSLIN L+ ++ GE+S K RGKHTTR
Sbjct: 124 GPSGVGKSSLINLLQE----------------------VKELETGEISKKLQRGKHTTRD 161
Query: 226 VSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEV-----CAVGLLYMIH 273
LLPL GGY+ DTPGF+ L + + L FPE C G + IH
Sbjct: 162 SRLLPLPQGGYIIDTPGFSSLELPPIENFEQLTSLFPEFQRKESCKFGDCHHIH 215
>gi|408356905|ref|YP_006845436.1| ribosome biogenesis GTPase RsgA [Amphibacillus xylanus NBRC 15112]
gi|407727676|dbj|BAM47674.1| putative ribosome biogenesis GTPase RsgA [Amphibacillus xylanus
NBRC 15112]
Length = 293
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 112/244 (45%), Gaps = 28/244 (11%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79
GV C R L +K K LVGD V + + D G + + R E++ PPVAN+D
Sbjct: 19 NGVTYQCKARGLFRKTKETPLVGDFVKFEADNLTD--GYVTELLPRKNELVRPPVANIDQ 76
Query: 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWG 136
L+ S +P+ L RFLV E I + + K++L+DE LN + G
Sbjct: 77 ALIAVSAKEPEFSAKLLDRFLVLVEFNHIDAIILVTKMDLLDENERPKLNQYIQDYQQLG 136
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
Y+ S E + + Q L +T+VI G SGVGKSS +N L+ A
Sbjct: 137 YQVEQLSTEWPVQHEVFTQLLEGKTSVIAGQSGVGKSSFLNLLKPELKIETA-------- 188
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
E+S GRG+HTTRH L+ + GG +ADTPGF+ ++ + L
Sbjct: 189 --------------EISQSLGRGRHTTRHTELIHVY-GGMIADTPGFSSLDFDQIELEQL 233
Query: 257 AQTF 260
F
Sbjct: 234 PFCF 237
>gi|421500621|ref|ZP_15947613.1| ribosome small subunit-dependent GTPase A [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
gi|402267175|gb|EJU16571.1| ribosome small subunit-dependent GTPase A [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
Length = 265
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 115/239 (48%), Gaps = 35/239 (14%)
Query: 46 VVGSIDWVD--RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA 103
VVG DWV+ I V+ R + P VAN+D+L + F+ P L+ + L L+ +
Sbjct: 12 VVG--DWVEISEENTILEVYPRKNRLTRPVVANIDYLAIQFAAKNPVLDFYRLHMLLLHS 69
Query: 104 ESTGIPLTLALNKVELVDEEVLNTWKSR---LHTWGYEPLFCSVESKLGLDSLLQRLRDQ 160
I + +NK++L+ E L ++ + L F S + + G+++L Q +D+
Sbjct: 70 MYEKIRPCVIINKIDLLTETELEEFRKQFNFLQALSIPLFFISQKEQKGIEALKQFFQDK 129
Query: 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220
T I GPSGVGKSSLIN L+ K E GE+S K RGK
Sbjct: 130 VTAIGGPSGVGKSSLINLLQEV-------------------KALE---TGEISKKLQRGK 167
Query: 221 HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEV-----CAVGLLYMIH 273
HTTR LLPL GGY+ DTPGF+ L + + L FPE C G + IH
Sbjct: 168 HTTRDSRLLPLPQGGYIIDTPGFSSLELPPIENFEQLTSLFPEFQRKESCKFGDCHHIH 226
>gi|365841973|ref|ZP_09383017.1| ribosome small subunit-dependent GTPase A [Flavonifractor plautii
ATCC 29863]
gi|364576615|gb|EHM53931.1| ribosome small subunit-dependent GTPase A [Flavonifractor plautii
ATCC 29863]
Length = 293
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 114/225 (50%), Gaps = 29/225 (12%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV + C R + + LVGDKV+ +D + G+++ + R E P VAN+D L
Sbjct: 20 GVLVACRGRGKFRHQRITPLVGDKVIFTPLD--NGAGILDEILPRRNEFQRPAVANIDQL 77
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL-VDEEVLNTWKSRLHTWGYEP 139
+++ S P +PF + R + AE + +NK +L EE+ T+++ G+
Sbjct: 78 VVIASGAIPVTDPFLIDRVVSIAEGRNCQPVICINKCDLDAAEELYQTYRA----AGFPT 133
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
L S E+ GL+ L + + + G SGVGKSS++NAL EP
Sbjct: 134 LRVSAETGEGLEELSGAIAGKVSAFTGNSGVGKSSILNAL----------------EP-- 175
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244
F Q VGEVS K GRG+HTTRHV L L G +ADTPGF+
Sbjct: 176 ---GFRLQ-VGEVSDKLGRGRHTTRHVELFRLRSGAIVADTPGFS 216
>gi|163846820|ref|YP_001634864.1| ribosome small subunit-dependent GTPase A [Chloroflexus aurantiacus
J-10-fl]
gi|222524641|ref|YP_002569112.1| ribosome small subunit-dependent GTPase A [Chloroflexus sp.
Y-400-fl]
gi|163668109|gb|ABY34475.1| ribosome small subunit-dependent GTPase A [Chloroflexus aurantiacus
J-10-fl]
gi|222448520|gb|ACM52786.1| ribosome small subunit-dependent GTPase A [Chloroflexus sp.
Y-400-fl]
Length = 324
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 126/256 (49%), Gaps = 41/256 (16%)
Query: 24 LLCVVRALLKKIKRR---VLVGDKVVVGSIDWVDRRGMIENVFQ------------RSTE 68
L C +R LKK ++ V++GD+V V + + +G IE V R
Sbjct: 43 LECRLRGRLKKERQATDLVVIGDQVEVMPVG--NGQGAIEAVLPRRSRLARRAAGPRGAY 100
Query: 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW 128
D VANVD +LL+FS +P+ P L R+LV E + +P+ + K++LV +
Sbjct: 101 KEDVIVANVDQVLLVFSCTKPEFTPRMLDRYLVICEHSELPVVIVATKIDLVVQHAAEAM 160
Query: 129 KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
S GY + S+ S G+ L +L + +V+ G SGVGKSSL+NA+
Sbjct: 161 FSPYARIGYPVFYTSIVSGEGIAELRSQLAGRISVVTGKSGVGKSSLLNAI--------- 211
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS--GGGYLADTPGFNQP 246
+P L + R GE+S + +G+HTT L+PL GGGY+ADTPG +
Sbjct: 212 -------QPGL------NLRTGEISERLTKGRHTTTVAELIPLDLPGGGYVADTPGIREI 258
Query: 247 SLLKVTKQSLAQTFPE 262
L V ++ LA F E
Sbjct: 259 GLWNVPERDLAWCFRE 274
>gi|403383385|ref|ZP_10925442.1| GTPase EngC [Kurthia sp. JC30]
Length = 293
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 121/241 (50%), Gaps = 34/241 (14%)
Query: 29 RALLKKIKRRVLVGDKV---VVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
R + +K LVGD V V G D G + V +R E++ PP+AN+D +L+FS
Sbjct: 28 RGVFRKRGITPLVGDFVEYEVEG-----DNDGTLTKVAERKNELVRPPIANIDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+ +P L RFLV ES I + L K++L+++ E + +K+ GY +
Sbjct: 83 VVEPDFNTILLDRFLVVLESFHIQPLICLTKMDLLNDAQRESIARYKADYEAIGYTVVET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ L+ + L +TTV+ G SGVGKS+L+N L P+L K
Sbjct: 143 FKDDATILEKIRPLLEGKTTVLAGQSGVGKSTLLNTLM----------------PMLNLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S GRGKHTTRHV L+ ++ GG +ADTPGF+ + K+ L FP+
Sbjct: 187 ------TGVISDALGRGKHTTRHVELIEVA-GGLIADTPGFSSFDFDTIEKEELTYCFPD 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|408673084|ref|YP_006872832.1| ribosome biogenesis GTPase RsgA [Emticicia oligotrophica DSM 17448]
gi|387854708|gb|AFK02805.1| ribosome biogenesis GTPase RsgA [Emticicia oligotrophica DSM 17448]
Length = 302
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 127/265 (47%), Gaps = 41/265 (15%)
Query: 20 TGVELLCVVRALLK----KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV- 74
TG L C ++ K K+ + VGDKVV D G+I ++ R I+ V
Sbjct: 14 TGAMLQCRLKGKFKIKGLKVTNPIAVGDKVVFEIEDENRNTGIINDILPRENYIIRQSVH 73
Query: 75 ---------ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL 125
N+D +L+ +++ P+ + RFLV AES IP L NK++L++EE +
Sbjct: 74 KTAHGHLLATNLDQAVLIATLNFPRTSLGFIDRFLVAAESFRIPTVLVFNKLDLLNEEQI 133
Query: 126 NTWKSRL----HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
++ L + Y+ +F S +G+D + L+D+ +++ G SGVGKS+L+NA+
Sbjct: 134 -AYQQELADLYESLNYKCIFTSAVDGIGVDEFYEVLKDKVSLLSGHSGVGKSTLVNAI-- 190
Query: 182 SPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241
+P+ D R EVST + +G HTT + LS G ++ D+P
Sbjct: 191 APNL--------------------DLRTSEVSTFANKGVHTTTFAEMFELSHGTFIIDSP 230
Query: 242 GFNQPSLLKVTKQSLAQTFPEVCAV 266
G + L + K + FPE+ +
Sbjct: 231 GIKELGLADMEKDEICHYFPEMLEI 255
>gi|313894776|ref|ZP_07828336.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. oral
taxon 137 str. F0430]
gi|320530192|ref|ZP_08031262.1| ribosome small subunit-dependent GTPase A [Selenomonas artemidis
F0399]
gi|402303124|ref|ZP_10822222.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. FOBRC9]
gi|312976457|gb|EFR41912.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. oral
taxon 137 str. F0430]
gi|320137625|gb|EFW29537.1| ribosome small subunit-dependent GTPase A [Selenomonas artemidis
F0399]
gi|400379354|gb|EJP32198.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. FOBRC9]
Length = 290
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 115/240 (47%), Gaps = 25/240 (10%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+ C +R +KK + + +V + + G++E + R + P VAN+ +++
Sbjct: 24 VACKLRGKMKKGRSDTGIVPGDIVTFVRMNEEEGIVERIDARQNLLARPRVANLTQIVVT 83
Query: 84 FSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
+ P P ++RFLV AE +G+ + L +NK +L +V T + GY L
Sbjct: 84 IAAVAPDPHPLVVSRFLVLAERSGVRKIVLCINKTDLYRGDV-RTLAADYTAAGYPVLCT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++ G+ +L L + TV GPSG GKSSL+NA+ SS +
Sbjct: 143 SAQTGEGIAALRDCLAGEITVFAGPSGTGKSSLLNAVDSSLSLA---------------- 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K GRG+HTTR L+P + GY+ DTPGF Q L +T L FPE
Sbjct: 187 ------TGTVSEKIGRGRHTTRRAELIPYA-DGYVVDTPGFTQQDLSDLTPAELTACFPE 239
>gi|172057931|ref|YP_001814391.1| ribosome small subunit-dependent GTPase A [Exiguobacterium
sibiricum 255-15]
gi|171990452|gb|ACB61374.1| ribosome small subunit-dependent GTPase A [Exiguobacterium
sibiricum 255-15]
Length = 301
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 123/233 (52%), Gaps = 34/233 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGD+VV + G I V R ++ PPVAN+D LL+ S +P L RF
Sbjct: 47 VVGDEVV---LHIESETGYILEVKDRQNFLVRPPVANIDQALLVVSAAEPDFSAHLLDRF 103
Query: 100 LVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156
LV E+ I + L K++L+ E+ ++ + T GY+ + S E+ G++S+
Sbjct: 104 LVLIEAKEIQPIIILTKMDLLQGEAEQHVSEAIAAYRTIGYQVIETSSETLTGVESVRPL 163
Query: 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
L+D+T+V+ G SGVGKSSL+NAL EP L + +S
Sbjct: 164 LKDKTSVLAGQSGVGKSSLLNAL----------------EPSLALE------TSHISKAL 201
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQ---PSLLKVTKQSLAQTFPEVCAV 266
GRG+HTTRHV+L+PL G G +ADTPGF+ P +++ + L FPE A+
Sbjct: 202 GRGRHTTRHVTLMPL-GDGLIADTPGFSNLDFPHEMEL--EELRWCFPEFVAL 251
>gi|335429780|ref|ZP_08556678.1| GTPase RsgA [Haloplasma contractile SSD-17B]
gi|334889790|gb|EGM28075.1| GTPase RsgA [Haloplasma contractile SSD-17B]
Length = 295
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 120/245 (48%), Gaps = 28/245 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + K LVGD+V D + G I + +R ++ PPVANVD +LL+FS
Sbjct: 27 CRGRGNFRNKKLTPLVGDQVEFQIEDHDE--GYILKLLKRKNSLVRPPVANVDQVLLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
P L RFL E GI + ++K++L++E + K+ + GY +
Sbjct: 85 AKDPDFSQHLLDRFLTVIEHVGIEPVIIVSKIDLLEEVEYDKLKTLFEYYREIGYTVIEQ 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S ++K L+ ++ + +V+ G SGVGKSS++NA+ +P + D+
Sbjct: 145 SAKTKANLEHVIDVINGNISVLAGQSGVGKSSMLNAI--NPEFNIKTDI----------- 191
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+S RGKHTTRHV LL + G +ADTPGF+ L++ K+ L F +
Sbjct: 192 ---------ISKALNRGKHTTRHVELLTVY-DGLIADTPGFSSLEFLEMEKEDLPGCFID 241
Query: 263 VCAVG 267
+G
Sbjct: 242 FARIG 246
>gi|323141168|ref|ZP_08076069.1| ribosome small subunit-dependent GTPase A [Phascolarctobacterium
succinatutens YIT 12067]
gi|322414311|gb|EFY05129.1| ribosome small subunit-dependent GTPase A [Phascolarctobacterium
succinatutens YIT 12067]
Length = 299
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 109/237 (45%), Gaps = 23/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C V+ +KK + + GD R GMI V R + P +AN+D + F+
Sbjct: 29 CKVKGKMKKNRFSLATGDIAGFEVSSSEKREGMITGVLPRRNFLPRPTLANLDLFVAAFA 88
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L AE IP L LNK + ++ K+ GYE S +
Sbjct: 89 CAAPDFSFLLADKLLALAELAKIPAILVLNKEDNAPAGLIEQVKAVYEPIGYEVYTLSAQ 148
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+++L +RLR + GPSGVGKSS INA+ SS
Sbjct: 149 NGTGVEALRERLRGKICAFGGPSGVGKSSTINAIDSSV---------------------- 186
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D R GEVS K GRGKHTTR+ LLP GY+ADTPGF L +T + + +F E
Sbjct: 187 DLRTGEVSEKIGRGKHTTRYAQLLPFD-EGYIADTPGFGNLLLEGLTAEMVLASFRE 242
>gi|373115329|ref|ZP_09529504.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 7_1_58FAA]
gi|371670483|gb|EHO35563.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium 7_1_58FAA]
Length = 293
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 114/225 (50%), Gaps = 29/225 (12%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV + C R + + LVGDKV+ +D + G+++ + R E P VAN+D L
Sbjct: 20 GVLVACRGRGKFRHQRIIPLVGDKVIFTPLD--NGAGILDEILPRRNEFQRPAVANIDQL 77
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL-VDEEVLNTWKSRLHTWGYEP 139
+++ S P +PF + R + AE + +NK +L EE+ T+++ G+
Sbjct: 78 VVIASGAIPVTDPFLIDRVVSIAEGRNCQPVICINKCDLDAAEELYQTYRA----AGFPT 133
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
L S E+ GL+ L + + + G SGVGKSS++NAL EP
Sbjct: 134 LRVSAETGEGLEELSGAIAGKASAFTGNSGVGKSSILNAL----------------EP-- 175
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN 244
F Q VGEVS K GRG+HTTRHV L L G +ADTPGF+
Sbjct: 176 ---GFRLQ-VGEVSDKLGRGRHTTRHVELFRLRSGAIVADTPGFS 216
>gi|336400752|ref|ZP_08581525.1| ribosome biogenesis GTPase RsgA [Fusobacterium sp. 21_1A]
gi|336161777|gb|EGN64768.1| ribosome biogenesis GTPase RsgA [Fusobacterium sp. 21_1A]
Length = 297
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 125/257 (48%), Gaps = 34/257 (13%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 29 CKLRGILKKTNNKYNCVVGDRV------EISEDNTIVEIFKRDNMLIRPIVANVDYLAIQ 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY--EPLF 141
F+ P ++ + L+ A + + +NK++ + +E L K +L P+F
Sbjct: 83 FAAKHPNIDFERINLLLLTAFYYKVKPIVIVNKIDYLTKEELCELKEKLSFLEKISVPMF 142
Query: 142 -CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S E L
Sbjct: 143 LISCHQNIGLEKVENFLKDKITVIGGPSGVGKSSFINFLQS--------------EKTL- 187
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ GE+S K RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 188 -------KTGEISEKLQRGKHTTRDSNMIKMKAGGYIIDTPGFSSIEVPNIENREELISL 240
Query: 260 FPEVCAVGLLYMIHMLH 276
FPE + ++ H
Sbjct: 241 FPEFSNIESCKFLNCSH 257
>gi|260494590|ref|ZP_05814720.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
3_1_33]
gi|260197752|gb|EEW95269.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
3_1_33]
Length = 297
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 125/257 (48%), Gaps = 34/257 (13%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 29 CKLRGILKKTNNKYNCVVGDRV------EISEDNTIVEIFKRDNMLIRPIVANVDYLAIQ 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY--EPLF 141
F+ P ++ + L+ A + + +NK++ + +E L K +L P+F
Sbjct: 83 FAAKHPNIDFERINLLLLTAFYYKVKPIVIVNKIDYLTKEELCELKEKLSFLEKISVPMF 142
Query: 142 -CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S E L
Sbjct: 143 LISCHQNIGLEKVEDFLKDKITVIGGPSGVGKSSFINFLQS--------------EKTL- 187
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ GE+S K RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 188 -------KTGEISEKLQRGKHTTRDSNMIKMKAGGYIIDTPGFSSIEVPNIENREELISL 240
Query: 260 FPEVCAVGLLYMIHMLH 276
FPE + ++ H
Sbjct: 241 FPEFSNIESCKFLNCSH 257
>gi|419841135|ref|ZP_14364512.1| ribosome small subunit-dependent GTPase A [Fusobacterium
necrophorum subsp. funduliforme ATCC 51357]
gi|386905887|gb|EIJ70638.1| ribosome small subunit-dependent GTPase A [Fusobacterium
necrophorum subsp. funduliforme ATCC 51357]
Length = 265
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 115/239 (48%), Gaps = 35/239 (14%)
Query: 46 VVGSIDWVD--RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA 103
VVG DWV+ I V+ R + P VAN+D+L + F+ P L+ + L ++ +
Sbjct: 12 VVG--DWVEISEENTILEVYPRKNRLTRPVVANIDYLAIQFAAKNPVLDFYRLHMLILHS 69
Query: 104 ESTGIPLTLALNKVELVDEEVLNTWKSR---LHTWGYEPLFCSVESKLGLDSLLQRLRDQ 160
I + +NK++L+ E L ++ + L F S + + G+++L Q +D+
Sbjct: 70 MYEKIRPCVIINKIDLLTETELEEFRKQFDFLQALSIPLFFISQKEQKGIEALKQFFQDK 129
Query: 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220
T I GPSGVGKSSLIN L+ K E GE+S K RGK
Sbjct: 130 VTAIGGPSGVGKSSLINLLQEV-------------------KALE---TGEISKKLQRGK 167
Query: 221 HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEV-----CAVGLLYMIH 273
HTTR LLPL GGY+ DTPGF+ L + + L FPE C G + IH
Sbjct: 168 HTTRDSRLLPLPQGGYIIDTPGFSSLELPPIENFEQLTSLFPEFQRKESCKFGDCHHIH 226
>gi|340756153|ref|ZP_08692784.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp. D12]
gi|340573048|gb|EFS23742.2| ribosome small subunit-dependent GTPase A [Fusobacterium sp. D12]
Length = 254
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 112/234 (47%), Gaps = 33/234 (14%)
Query: 51 DWVD--RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI 108
DWV+ I V+ R + P VAN+D+L + F+ P L+ + L L+ + I
Sbjct: 4 DWVEISEENTILEVYPRKNRLTRPVVANIDYLAIQFAAKNPVLDFYRLHMLLLHSMYEKI 63
Query: 109 PLTLALNKVELVDEEVLNTWKSR---LHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIV 165
+ +NK++L+ E L ++ + L F S + + G+++L Q +D+ T I
Sbjct: 64 RPCVIINKIDLLTETELEEFRKQFNFLQALSIPLFFISQKEQKGIEALKQFFQDKVTAIG 123
Query: 166 GPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225
GPSGVGKSSLIN L+ K E GE+S K RGKHTTR
Sbjct: 124 GPSGVGKSSLINLLQE-------------------VKALE---TGEISKKLQRGKHTTRD 161
Query: 226 VSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEV-----CAVGLLYMIH 273
LLPL GGY+ DTPGF+ L + + L FPE C G + IH
Sbjct: 162 SRLLPLPQGGYIIDTPGFSSLELPPIENFEQLTSLFPEFQRKESCKFGDCHHIH 215
>gi|315917488|ref|ZP_07913728.1| GTPase [Fusobacterium gonidiaformans ATCC 25563]
gi|317059005|ref|ZP_07923490.1| GTPase [Fusobacterium sp. 3_1_5R]
gi|313684681|gb|EFS21516.1| GTPase [Fusobacterium sp. 3_1_5R]
gi|313691363|gb|EFS28198.1| GTPase [Fusobacterium gonidiaformans ATCC 25563]
Length = 268
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 121/255 (47%), Gaps = 35/255 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
+R +LKK + + VVG + I ++ R ++ P VAN+D+L + F+
Sbjct: 1 MRGILKKKENK----HNCVVGDYVEISEENSIIEIYPRKNQLTRPVVANIDYLAIQFAAK 56
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH---TWGYEPLFCSV 144
P L+ F L L+ + + + +NK++L+ E L + + H F S
Sbjct: 57 NPILDFFRLHMLLLHSMYEKVCPCIIINKIDLLTEIELQDLQQQFHFLKDLSIPIFFISQ 116
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ ++G++ L + +++ T I GPSGVGKSSLIN L+ +
Sbjct: 117 KEQIGIEVLKEFFQNKITAIGGPSGVGKSSLINLLQEA---------------------- 154
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL-LKVTKQSLAQTFPEV 263
++ GE+S K RGKHTTR LL L GGY+ DTPGF+ L L + L + FPE
Sbjct: 155 KELETGEISKKLQRGKHTTRDTRLLALPQGGYIIDTPGFSSLELPLIENFEQLMKLFPEF 214
Query: 264 -----CAVGLLYMIH 273
C G + IH
Sbjct: 215 EVGKPCKFGDCHHIH 229
>gi|313677227|ref|YP_004055223.1| ribosome small subunit-dependent GTPase a [Marivirga tractuosa DSM
4126]
gi|312943925|gb|ADR23115.1| ribosome small subunit-dependent GTPase A [Marivirga tractuosa DSM
4126]
Length = 305
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 118/255 (46%), Gaps = 41/255 (16%)
Query: 26 CVVRALLK----KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP-------- 73
C +R L+ K+ V VGD V + + D +I++V R I+
Sbjct: 25 CRLRGKLRLDDEKVTNPVAVGDWVNIAPEN--DTEAIIKDVLPRENYIIRKSTRKKKHSH 82
Query: 74 --VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW--- 128
AN+D +L+ ++ P+ + RFLV ES IP L NK +L+DEE L +
Sbjct: 83 RLAANIDQAVLIVTLAFPRTSLGFIDRFLVSCESFRIPAVLVFNKADLLDEEGLEYYEAL 142
Query: 129 KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
K GY+ L S E +G++ L L +T++ G SGVGKS+L+N + SPH
Sbjct: 143 KFDYQELGYKVLLVSAEENIGMEELKAVLEGKTSLFAGHSGVGKSTLLNLI--SPHI--- 197
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
DQR+GEVS G+G HTT + G ++ DTPG + L
Sbjct: 198 -----------------DQRIGEVSESVGKGVHTTTFAEMFEAWEGAFVIDTPGIKELGL 240
Query: 249 LKVTKQSLAQTFPEV 263
+ + L+ FPE+
Sbjct: 241 WDIGNEELSHYFPEM 255
>gi|319937493|ref|ZP_08011898.1| ribosome-associated GTPase [Coprobacillus sp. 29_1]
gi|319807333|gb|EFW03942.1| ribosome-associated GTPase [Coprobacillus sp. 29_1]
Length = 291
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 107/223 (47%), Gaps = 25/223 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K + LVGD + V+ G I + R ++ PP+ NVD LL+FS
Sbjct: 25 CRARGKFRKNDQTPLVGDFCEFSIENEVE--GYILKLLPRKNALVRPPICNVDQALLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L L RFL+ E I + ++K++L ++ ++ GY + S +
Sbjct: 83 AKEPDLNTLLLNRFLILIEHLHIEPLICISKMDLAVQKDVHQLMFPYEAAGYRVYYVSAQ 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G++ + + + TVI G SGVGKSSL+NAL D+ E
Sbjct: 143 ENQGIEEIKHLFKKKVTVITGQSGVGKSSLLNAL----------DIHLNIE--------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
E+S GRGKHTTRHV LL + GY+ADTPGF+ L
Sbjct: 184 ---TNEISKALGRGKHTTRHVELLKMY-DGYVADTPGFSSLEL 222
>gi|422416339|ref|ZP_16493296.1| ribosome small subunit-dependent GTPase A [Listeria innocua FSL
J1-023]
gi|313623274|gb|EFR93518.1| ribosome small subunit-dependent GTPase A [Listeria innocua FSL
J1-023]
Length = 291
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 116/241 (48%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQVENKTD--GYILDVLSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL---VDEEVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L ++E + +K T GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLATDAEKEQIAVYKEVYETIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 V 263
+
Sbjct: 238 M 238
>gi|114566750|ref|YP_753904.1| GTPase EngC [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|114337685|gb|ABI68533.1| GTPase EngC [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 294
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 118/242 (48%), Gaps = 27/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R KIK V GD+V ++ +G++E++ R E+ P +ANV+ LL++ +
Sbjct: 30 CKLRG---KIKAPVFTGDRVKFTPLEA--GKGILESIIPRKNELYRPRIANVNLLLIIMA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
QP L + L+ A I + LNK +L + + G P+ S
Sbjct: 85 CKQPSPSLILLDKLLLLASYYRITPQILLNKSDLPPDSKSIFIEDYYPQMGLPPIKTSAI 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K G+D+L + ++ TV GPSG GKSSL+NAL D V
Sbjct: 145 KKTGIDTLRIVIENKITVFAGPSGAGKSSLLNAL------VDGISV-------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA 265
+ E+S K RGKHTTRHV L PL GG++ADTPGF+Q + + LA F ++ +
Sbjct: 185 --KTQELSKKVERGKHTTRHVELYPLESGGWIADTPGFSQLEIPAIKSSELASYFNDLSS 242
Query: 266 VG 267
V
Sbjct: 243 VA 244
>gi|16800999|ref|NP_471267.1| ribosome-associated GTPase [Listeria innocua Clip11262]
gi|38257726|sp|Q92AI9.1|RSGA2_LISIN RecName: Full=Putative ribosome biogenesis GTPase RsgA 2
gi|16414434|emb|CAC97163.1| lin1933 [Listeria innocua Clip11262]
Length = 291
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 116/241 (48%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQVENKTD--GYILDVLSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL---VDEEVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L ++E + +K T GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLATDAEKEQIAVYKEVYETIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 V 263
+
Sbjct: 238 M 238
>gi|383761307|ref|YP_005440289.1| GTPase EngC [Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381381575|dbj|BAL98391.1| GTPase EngC [Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 346
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 120/257 (46%), Gaps = 40/257 (15%)
Query: 25 LCVVRALLKKIKRR---VLVGDKVVVGSIDWVDRRGMIENVFQR-----------STEIL 70
+C VR L + R V VGD+V V + ++ G+IE + R S
Sbjct: 69 ICEVRGRLLLERGRDTLVAVGDRVWVAPVG--EKSGLIERIEARRSVLSRQHPGESRPAE 126
Query: 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKS 130
D +AN D L++F+ P+ L RFLV AE+ +P+ + +NK+EL EE
Sbjct: 127 DVILANPDQALVVFAAANPEPHLRMLDRFLVIAEANELPVMICVNKIELTGEEAARRQFG 186
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY L+ S + ++G+D+L L D+ TV+ GPSGVGKSSLINA+ H
Sbjct: 187 LYERIGYPVLYASAKQRIGIDALRDFLTDRITVVTGPSGVGKSSLINAVHPDLHL----- 241
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL--LPLSGGGYLADTPGFNQPSL 248
R G++ +G+HTTR L LP Y+ADTPG + L
Sbjct: 242 -----------------REGDLRDFMNKGRHTTRAAQLFRLPFGRNSYVADTPGIRELGL 284
Query: 249 LKVTKQSLAQTFPEVCA 265
+ +L F E+ A
Sbjct: 285 YDIEPSNLPFYFREMTA 301
>gi|381209849|ref|ZP_09916920.1| GTPase RsgA [Lentibacillus sp. Grbi]
Length = 293
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 114/241 (47%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V S + G I ++ R ++ PPVANVD +++ S
Sbjct: 25 CRGRGIFRKQKVTPLVGDFVEFDSDN--PEEGYILSIKSRRNMLIRPPVANVDQAIIVSS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
P P + RFLV ES I + + K +L+ + E + T++ GY
Sbjct: 83 AIMPDFNPLLMDRFLVLIESKEISPVIFITKKDLLSDKEMESIMTYERLYREIGYPIELV 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + D L DQ +VI G SGVGKSSL+NAL S
Sbjct: 143 SSKELEDPDRLKSYFSDQVSVIAGQSGVGKSSLLNALNPSL------------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S GRGKHTTRHV L+ +G G +ADTPGF+ ++T L FPE
Sbjct: 184 ---ELKTDDISESLGRGKHTTRHVELVE-AGDGLVADTPGFSSLDFNEITAGKLGDCFPE 239
Query: 263 V 263
+
Sbjct: 240 M 240
>gi|404413898|ref|YP_006699485.1| GTPase [Listeria monocytogenes SLCC7179]
gi|404239597|emb|CBY60998.1| putative GTPase [Listeria monocytogenes SLCC7179]
Length = 290
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 114/241 (47%), Gaps = 31/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ K +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NEPDK---EAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 182
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 183 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 236
Query: 263 V 263
+
Sbjct: 237 I 237
>gi|423098728|ref|ZP_17086436.1| ribosome small subunit-dependent GTPase A [Listeria innocua ATCC
33091]
gi|370794555|gb|EHN62318.1| ribosome small subunit-dependent GTPase A [Listeria innocua ATCC
33091]
Length = 307
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 116/241 (48%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 41 CRARGNFRKRNISPLVGDDVEFQVENKTD--GYILDVLSRENALVRPPVANIDIAILVFS 98
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL---VDEEVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L ++E + +K T GY+
Sbjct: 99 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLATDAEKEQIAIYKEVYETIGYDVFVT 158
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 159 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 199
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 200 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 253
Query: 263 V 263
+
Sbjct: 254 M 254
>gi|16803859|ref|NP_465344.1| ribosome-associated GTPase [Listeria monocytogenes EGD-e]
gi|47096540|ref|ZP_00234130.1| conserved hypothetical protein TIGR00157 [Listeria monocytogenes
str. 1/2a F6854]
gi|254829186|ref|ZP_05233873.1| ribosome-associated GTPase [Listeria monocytogenes FSL N3-165]
gi|254912377|ref|ZP_05262389.1| ribosome-associated GTPase [Listeria monocytogenes J2818]
gi|254936704|ref|ZP_05268401.1| ribosome-associated GTPase [Listeria monocytogenes F6900]
gi|255027280|ref|ZP_05299266.1| ribosome-associated GTPase [Listeria monocytogenes FSL J2-003]
gi|255029853|ref|ZP_05301804.1| ribosome-associated GTPase [Listeria monocytogenes LO28]
gi|284802265|ref|YP_003414130.1| ribosome-associated GTPase [Listeria monocytogenes 08-5578]
gi|284995407|ref|YP_003417175.1| ribosome-associated GTPase [Listeria monocytogenes 08-5923]
gi|386047472|ref|YP_005965804.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
J0161]
gi|386050796|ref|YP_005968787.1| ribosome-associated GTPase [Listeria monocytogenes FSL R2-561]
gi|404284315|ref|YP_006685212.1| GTPase [Listeria monocytogenes SLCC2372]
gi|405758870|ref|YP_006688146.1| GTPase [Listeria monocytogenes SLCC2479]
gi|38257699|sp|Q8Y680.1|RSGA2_LISMO RecName: Full=Putative ribosome biogenesis GTPase RsgA 2
gi|16411273|emb|CAC99897.1| lmo1819 [Listeria monocytogenes EGD-e]
gi|47015072|gb|EAL06015.1| conserved hypothetical protein TIGR00157 [Listeria monocytogenes
serotype 1/2a str. F6854]
gi|258601596|gb|EEW14921.1| ribosome-associated GTPase [Listeria monocytogenes FSL N3-165]
gi|258609301|gb|EEW21909.1| ribosome-associated GTPase [Listeria monocytogenes F6900]
gi|284057827|gb|ADB68768.1| ribosome-associated GTPase [Listeria monocytogenes 08-5578]
gi|284060874|gb|ADB71813.1| ribosome-associated GTPase [Listeria monocytogenes 08-5923]
gi|293590359|gb|EFF98693.1| ribosome-associated GTPase [Listeria monocytogenes J2818]
gi|345534463|gb|AEO03904.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
J0161]
gi|346424642|gb|AEO26167.1| ribosome-associated GTPase [Listeria monocytogenes FSL R2-561]
gi|404233817|emb|CBY55220.1| putative GTPase [Listeria monocytogenes SLCC2372]
gi|404236752|emb|CBY58154.1| putative GTPase [Listeria monocytogenes SLCC2479]
gi|441471580|emb|CCQ21335.1| Putative ribosome biogenesis GTPase RsgA 2 [Listeria monocytogenes]
gi|441474711|emb|CCQ24465.1| Putative ribosome biogenesis GTPase RsgA 2 [Listeria monocytogenes
N53-1]
Length = 291
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 114/241 (47%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 V 263
+
Sbjct: 238 I 238
>gi|386044128|ref|YP_005962933.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
10403S]
gi|386054074|ref|YP_005971632.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
Finland 1998]
gi|404411120|ref|YP_006696708.1| GTPase [Listeria monocytogenes SLCC5850]
gi|345537362|gb|AEO06802.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
10403S]
gi|346646725|gb|AEO39350.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
Finland 1998]
gi|404230946|emb|CBY52350.1| putative GTPase [Listeria monocytogenes SLCC5850]
Length = 291
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 114/241 (47%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNALGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 V 263
+
Sbjct: 238 I 238
>gi|385799664|ref|YP_005836068.1| ribosome small subunit-dependent GTPase A [Halanaerobium praevalens
DSM 2228]
gi|309389028|gb|ADO76908.1| ribosome small subunit-dependent GTPase A [Halanaerobium praevalens
DSM 2228]
Length = 286
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 118/249 (47%), Gaps = 33/249 (13%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D+ G C +R KI+ ++ GD V ++ M+E R+ + P VAN+
Sbjct: 17 DQKGEVYRCRIRG---KIQEKIYPGDHV-----EFDKENKMLEGYHARNNLLQRPKVANI 68
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++++ S+ P P L RFL+ ES+G + +NK++ D + GY
Sbjct: 69 DQVVIMHSVKNPDFAPALLDRFLLLVESSGFEPLIVINKIDKADPGFKENF-VEYQKAGY 127
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+F SV+ L L ++L+++ V+ GPSG GKSS +N + + AA
Sbjct: 128 NLIFISVKEAKNLTKLFEQLKNKINVLTGPSGAGKSSFLNQVLEDTNLRTAA-------- 179
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFN--QPSLLKVTKQS 255
+S K +G HTTR V LL L G++ADTPGF+ + L++ +
Sbjct: 180 --------------ISKKLKKGVHTTRMVELLALPSNGWVADTPGFSSIKKLNLEIEADN 225
Query: 256 LAQTFPEVC 264
L+ FPE+
Sbjct: 226 LSWYFPEIA 234
>gi|116873254|ref|YP_850035.1| ribosome-associated GTPase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742132|emb|CAK21256.1| GTPase, putative [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 291
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 114/241 (47%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQVENKTD--GYILDVMSRENSLVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K T GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIQPVICISKMDLATEAEKEQIMVYKEVYETIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNNLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 V 263
+
Sbjct: 238 M 238
>gi|358465601|ref|ZP_09175537.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. oral
taxon 058 str. F0407]
gi|357065410|gb|EHI75621.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. oral
taxon 058 str. F0407]
Length = 301
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 113/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 50 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 109
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL LRD+ TV
Sbjct: 110 HKGIHPVVYISKMDLLEDREELDFYQQIYRAIGYD----FVTSK---EELLPLLRDKVTV 162
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 163 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 200
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 201 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIATV 242
>gi|225181334|ref|ZP_03734778.1| ribosome small subunit-dependent GTPase A [Dethiobacter
alkaliphilus AHT 1]
gi|225167915|gb|EEG76722.1| ribosome small subunit-dependent GTPase A [Dethiobacter
alkaliphilus AHT 1]
Length = 276
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 122/243 (50%), Gaps = 27/243 (11%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G + C R KK + GD+V + + G++E V R + ++ PPVANVD +
Sbjct: 6 GAVVRCRARGRFKKEGTTIHAGDRVRFTFLSETE--GVLEEVKPRESFLVRPPVANVDQV 63
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ + P L L R LV AES + + +NK +L D+E + + GY
Sbjct: 64 MIVCAPQDPPLSLQLLDRLLVLAESQRLRSVICMNKDDLPHDKE--SALRDLYGGAGYTV 121
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
LF S G++ Q+L + TV+ GPSGVGKSSL+N + +P L
Sbjct: 122 LFTSALYGQGIEDAKQQLCKRITVLAGPSGVGKSSLLNRI----------------QPGL 165
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
K E+S KS RG+HTTRHV LL L GG +AD+PGF+Q L V + L
Sbjct: 166 QLK------TAEISEKSKRGRHTTRHVELLTLDCGGLVADSPGFSQLDLSGVASEELPFF 219
Query: 260 FPE 262
FPE
Sbjct: 220 FPE 222
>gi|227824647|ref|ZP_03989479.1| ribosome small subunit-dependent GTPase A [Acidaminococcus sp. D21]
gi|352683755|ref|YP_004895739.1| ribosome small subunit-dependent GTPase A [Acidaminococcus
intestini RyC-MR95]
gi|226905146|gb|EEH91064.1| ribosome small subunit-dependent GTPase A [Acidaminococcus sp. D21]
gi|350278409|gb|AEQ21599.1| ribosome small subunit-dependent GTPase A [Acidaminococcus
intestini RyC-MR95]
Length = 295
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 111/246 (45%), Gaps = 26/246 (10%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78
+ GV VR LKK + + GD V +++ GMIE + R + P VAN+D
Sbjct: 21 RDGVTYTAKVRGRLKKARFLLAAGDWV---TLETRGEEGMIETILPRRNLLQRPLVANLD 77
Query: 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE 138
L +F+ P + + L AE+ IP L +NK +L E L ++ GY
Sbjct: 78 WLFAVFAAKDPAPSFLLIDKLLALAEAYDIPAALVINKCDLAAEGFLEQIRAIYEPLGYP 137
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
F GLD + ++ T+ GPSG GKS+L+N L +P
Sbjct: 138 VYFVEARKGKGLDPIRAKMTGLTSAFGGPSGAGKSTLLNHL----------------DPS 181
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
L G VS K GRG+HTTR LLP + GG++ DTPGF L ++ S+
Sbjct: 182 L------TLETGAVSEKIGRGRHTTRFAQLLPFA-GGFIVDTPGFGNIDLRELELPSVEA 234
Query: 259 TFPEVC 264
F E+
Sbjct: 235 GFRELA 240
>gi|422933408|ref|ZP_16966329.1| GTP-binding protein [Fusobacterium nucleatum subsp. animalis ATCC
51191]
gi|339891128|gb|EGQ80155.1| GTP-binding protein [Fusobacterium nucleatum subsp. animalis ATCC
51191]
Length = 297
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 123/257 (47%), Gaps = 34/257 (13%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 29 CKLRGILKKTNNKYNCVVGDRV------EISEDNTIVEIFKRDNMLIRPIVANVDYLAIQ 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY--EPLF 141
F+ P ++ + L+ A + + +NK++ + +E L K +L P+F
Sbjct: 83 FAAKHPNIDFERINLLLLTAFYYKVKPIVIVNKIDYLTKEELCELKEKLSFLEKISVPMF 142
Query: 142 -CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S
Sbjct: 143 LISCHQNIGLEKVEDFLKDKITVIGGPSGVGKSSFINFLQSEKTL--------------- 187
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ GE+S K RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 188 -------KTGEISEKLQRGKHTTRDSNMIKMKVGGYIIDTPGFSSIEVPNIENREELISL 240
Query: 260 FPEVCAVGLLYMIHMLH 276
FPE + ++ H
Sbjct: 241 FPEFSNIESCKFLNCSH 257
>gi|320159690|ref|YP_004172914.1| GTPase EngC [Anaerolinea thermophila UNI-1]
gi|319993543|dbj|BAJ62314.1| GTPase EngC [Anaerolinea thermophila UNI-1]
Length = 306
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 114/237 (48%), Gaps = 37/237 (15%)
Query: 42 GDKVVVGSIDWV----DRRGMIENVFQRSTEI--LDPP---------VANVDHLLLLFSM 86
GD + VG + D G+IE + R +E+ +DP +AN+D ++ +F+
Sbjct: 44 GDVISVGDCVQILPLSDGTGVIEVIEPRHSELVRMDPRPRGEYRQILLANIDQIVAVFAC 103
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES 146
P+ L RFLV AE GIP + NKV+LV E GY ++ SV
Sbjct: 104 ANPEPRLRMLDRFLVIAEKQGIPAVIIANKVDLVGMERARELFGMYPPLGYPVIYTSVRQ 163
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
+GLD + + LR + T + GPSGVGKSSL+NA++ PH A
Sbjct: 164 GVGLDEVRECLRGKITGLAGPSGVGKSSLLNAIQ--PHLGLA------------------ 203
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
V EVS SG+G+HTT L L GGY+AD PG +L + L FPE+
Sbjct: 204 --VREVSEASGKGRHTTVVRQLFRLEMGGYVADLPGLRALALWDTQPEELDGYFPEL 258
>gi|268317257|ref|YP_003290976.1| ribosome small subunit-dependent GTPase A [Rhodothermus marinus DSM
4252]
gi|262334791|gb|ACY48588.1| ribosome small subunit-dependent GTPase A [Rhodothermus marinus DSM
4252]
Length = 319
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 38/238 (15%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV-----------ANVDHLLLLFSMD 87
V+VGD+V V D G+I +V R E+ AN+D + ++ ++
Sbjct: 50 VVVGDRVKVRLNP--DGTGLIVDVHPRRNELSRRAAGRRHSLRHVIAANIDFVWIVQAVH 107
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSV 144
P+ P + R LV AE IP L LNK++L+ EE + H + GY L SV
Sbjct: 108 LPEPNPGFIDRVLVAAERYEIPAGLILNKIDLMTEEDRPAIDALEHLYADLGYRVLRTSV 167
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ GLD+L + LR +T+V+ GPSGVGKSSL+NA+ EP L
Sbjct: 168 VTGEGLDALREALRGKTSVVTGPSGVGKSSLLNAI----------------EPDL----- 206
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ R VS K+G+G+HTT +V+L PLS GG++ DTPG + + + L+ F E
Sbjct: 207 -NIRTAPVSEKTGKGRHTTTYVALYPLSIGGFVVDTPGLREFGVTDLEPAELSHYFVE 263
>gi|46908051|ref|YP_014440.1| ribosome-associated GTPase [Listeria monocytogenes serotype 4b str.
F2365]
gi|226224422|ref|YP_002758529.1| hypothetical protein Lm4b_01835 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826139|ref|ZP_05231140.1| ribosome-associated GTPase [Listeria monocytogenes FSL J1-194]
gi|254852726|ref|ZP_05242074.1| ribosome-associated GTPase [Listeria monocytogenes FSL R2-503]
gi|254933291|ref|ZP_05266650.1| ribosome-associated GTPase [Listeria monocytogenes HPB2262]
gi|300763868|ref|ZP_07073865.1| ribosome-associated GTPase YjeQ [Listeria monocytogenes FSL N1-017]
gi|386732559|ref|YP_006206055.1| GTPase RsgA [Listeria monocytogenes 07PF0776]
gi|404281432|ref|YP_006682330.1| GTPase [Listeria monocytogenes SLCC2755]
gi|404287248|ref|YP_006693834.1| GTPase [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750171|ref|YP_006673637.1| GTPase [Listeria monocytogenes ATCC 19117]
gi|405753046|ref|YP_006676511.1| GTPase [Listeria monocytogenes SLCC2378]
gi|405755980|ref|YP_006679444.1| GTPase [Listeria monocytogenes SLCC2540]
gi|406704603|ref|YP_006754957.1| GTPase, putative [Listeria monocytogenes L312]
gi|417315468|ref|ZP_12102144.1| GTPase RsgA [Listeria monocytogenes J1816]
gi|417317920|ref|ZP_12104521.1| GTPase RsgA [Listeria monocytogenes J1-220]
gi|424714694|ref|YP_007015409.1| Putative ribosome biogenesis GTPase RsgA 1 [Listeria monocytogenes
serotype 4b str. LL195]
gi|424823580|ref|ZP_18248593.1| Putative ribosome biogenesis GTPase RsgA 1 [Listeria monocytogenes
str. Scott A]
gi|67460493|sp|Q71YJ7.1|RSGA1_LISMF RecName: Full=Putative ribosome biogenesis GTPase RsgA 1
gi|46881321|gb|AAT04617.1| conserved hypothetical protein TIGR00157 [Listeria monocytogenes
serotype 4b str. F2365]
gi|225876884|emb|CAS05593.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258606049|gb|EEW18657.1| ribosome-associated GTPase [Listeria monocytogenes FSL R2-503]
gi|293584851|gb|EFF96883.1| ribosome-associated GTPase [Listeria monocytogenes HPB2262]
gi|293595379|gb|EFG03140.1| ribosome-associated GTPase [Listeria monocytogenes FSL J1-194]
gi|300515604|gb|EFK42654.1| ribosome-associated GTPase YjeQ [Listeria monocytogenes FSL N1-017]
gi|328466172|gb|EGF37329.1| GTPase RsgA [Listeria monocytogenes J1816]
gi|328473546|gb|EGF44383.1| GTPase RsgA [Listeria monocytogenes J1-220]
gi|332312260|gb|EGJ25355.1| Putative ribosome biogenesis GTPase RsgA 1 [Listeria monocytogenes
str. Scott A]
gi|384391317|gb|AFH80387.1| GTPase RsgA [Listeria monocytogenes 07PF0776]
gi|404219371|emb|CBY70735.1| GTPase, putative [Listeria monocytogenes ATCC 19117]
gi|404222246|emb|CBY73609.1| putative GTPase [Listeria monocytogenes SLCC2378]
gi|404225180|emb|CBY76542.1| putative GTPase [Listeria monocytogenes SLCC2540]
gi|404228067|emb|CBY49472.1| putative GTPase [Listeria monocytogenes SLCC2755]
gi|404246177|emb|CBY04402.1| GTPase, putative [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361633|emb|CBY67906.1| GTPase, putative [Listeria monocytogenes L312]
gi|424013878|emb|CCO64418.1| Putative ribosome biogenesis GTPase RsgA 1 [Listeria monocytogenes
serotype 4b str. LL195]
Length = 291
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 114/241 (47%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNALGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 V 263
+
Sbjct: 238 M 238
>gi|407477611|ref|YP_006791488.1| ribosome biogenesis GTPase RsgA [Exiguobacterium antarcticum B7]
gi|407061690|gb|AFS70880.1| Ribosome biogenesis GTPase RsgA [Exiguobacterium antarcticum B7]
Length = 301
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 121/233 (51%), Gaps = 34/233 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGD+VV + G I V +R ++ PPVAN+D LL+ S +P L RF
Sbjct: 47 VVGDEVV---LHIESETGYILEVKERQNFLVRPPVANIDQALLVVSAAEPDFSAHLLDRF 103
Query: 100 LVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156
LV E+ I + L K++L+ + +N + GY + S E+ LG++ +
Sbjct: 104 LVLIEAKDIQPIIILTKMDLLQGKTAQEVNEAIAAYRKIGYHVVETSSETLLGVELVRPL 163
Query: 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
L+D+T+V+ G SGVGKSSL+NAL EP L + +S
Sbjct: 164 LKDKTSVLAGQSGVGKSSLLNAL----------------EPALALE------TSHISKSL 201
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQ---PSLLKVTKQSLAQTFPEVCAV 266
GRG+HTTRHV+L+PL G G +ADTPGF+ P +++ + L FPE A+
Sbjct: 202 GRGRHTTRHVTLIPL-GEGLIADTPGFSNLDFPHEMEL--EELRWCFPEFVAL 251
>gi|422410066|ref|ZP_16487027.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
FSL F2-208]
gi|313608151|gb|EFR84203.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
FSL F2-208]
Length = 291
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 114/241 (47%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASEPEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 V 263
+
Sbjct: 238 M 238
>gi|217964028|ref|YP_002349706.1| ribosome-associated GTPase [Listeria monocytogenes HCC23]
gi|290893051|ref|ZP_06556040.1| ribosome-associated GTPase [Listeria monocytogenes FSL J2-071]
gi|386008591|ref|YP_005926869.1| GTPase, putative [Listeria monocytogenes L99]
gi|386027199|ref|YP_005947975.1| ribosome-associated GTPase [Listeria monocytogenes M7]
gi|404408263|ref|YP_006690978.1| GTPase [Listeria monocytogenes SLCC2376]
gi|217333298|gb|ACK39092.1| ribosome small subunit-dependent GTPase A [Listeria monocytogenes
HCC23]
gi|290557411|gb|EFD90936.1| ribosome-associated GTPase [Listeria monocytogenes FSL J2-071]
gi|307571401|emb|CAR84580.1| GTPase, putative [Listeria monocytogenes L99]
gi|336023780|gb|AEH92917.1| ribosome-associated GTPase [Listeria monocytogenes M7]
gi|404242412|emb|CBY63812.1| putative GTPase [Listeria monocytogenes SLCC2376]
Length = 291
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 114/241 (47%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + ++L FPE
Sbjct: 184 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPETLQFCFPE 237
Query: 263 V 263
+
Sbjct: 238 M 238
>gi|342218700|ref|ZP_08711306.1| ribosome small subunit-dependent GTPase A [Megasphaera sp. UPII
135-E]
gi|341589076|gb|EGS32442.1| ribosome small subunit-dependent GTPase A [Megasphaera sp. UPII
135-E]
Length = 294
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 110/231 (47%), Gaps = 30/231 (12%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
K+K ++LVGD+V V + D +G+IE V R E+ P VAN+D ++++ + P +
Sbjct: 38 KVKHKILVGDEVEVMATDH--GKGLIEAVLPRQNELRRPAVANIDQIVMVLAAQSPDPDY 95
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSL 153
F + L+ I L +NK EL EV + GY+ L S + G+D L
Sbjct: 96 FLTDKLLLTCAYHHISPLLCMNKSEL-QREVAQAYCQHYTQCGYKTLAVSAHTGEGIDLL 154
Query: 154 LQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213
L+ + T GPSGVGKSSL+ L A+ G VS
Sbjct: 155 RSYLQGKITAFSGPSGVGKSSLLTLLLGKELAT-----------------------GAVS 191
Query: 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL--LKVTKQSLAQTFPE 262
K RG+HTTRH +L + Y+ DTPGF L LKV K LA FPE
Sbjct: 192 EKIRRGRHTTRHAEMLCMDAHTYVVDTPGFAAIELEPLKVAK--LALLFPE 240
>gi|118444328|ref|YP_878311.1| ribosome-associated GTPase [Clostridium novyi NT]
gi|254766369|sp|A0Q109.1|RSGA_CLONN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|118134784|gb|ABK61828.1| ribosome-associated GTPase YjeQ [Clostridium novyi NT]
Length = 290
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + K +VGD+V++ D + G IE + R ++ P VAN+ ++F+
Sbjct: 24 CKARGKFRNKKLTPMVGDRVIITPND--NNYGAIEEICTRDNYLIRPQVANISQAFIVFA 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FL++ E I + NK++L + + + GY+ +F +
Sbjct: 82 LKNPDVNLDLLNKFLIQCELKNIKSIVCFNKIDLYGDYENHEAVKMVSDAGYDYIFLKAK 141
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ LD L +L+ V GPSGVGKS+++N L +G + E
Sbjct: 142 EETNLDELKSKLKGNINVFCGPSGVGKSTILNKL-------------------VGKEVME 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S + RGKHTTRH L+ ++ G++ DTPGF+ L +K+ L F E
Sbjct: 183 ---TGIISERLKRGKHTTRHSELVEVN-NGFVVDTPGFSTLDLKFDSKEELKDYFRE 235
>gi|227872154|ref|ZP_03990524.1| ribosome-associated GTP-binding protein [Oribacterium sinus F0268]
gi|227842012|gb|EEJ52272.1| ribosome-associated GTP-binding protein [Oribacterium sinus F0268]
Length = 299
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 32/251 (12%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRR--GMIENVFQRSTEILDPPVAN 76
K+GV C + L + K + LVGD V V + ++ G I + R E++ P V+N
Sbjct: 18 KSGV-FECHAKGLFRNKKEKPLVGDMVEVEEVPDTEKEMVGQILRILPRKNELIRPLVSN 76
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLH 133
+D L+F++ +P+ + RFL+ E+ IP L NK +L+ E + +S
Sbjct: 77 IDQAALVFAVKEPEPSFPLIDRFLLHLEAREIPCMLFFNKRDLLSECEADYREKMQSIYE 136
Query: 134 TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
G F +K + +L+ L+ +TTV GPSGVGKSS+IN L
Sbjct: 137 KAGIPVYFFQSNTKEDREEILKLLKGKTTVFSGPSGVGKSSMINLL-------------- 182
Query: 194 WFEPILGSKWFEDQRV--GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251
ED+R+ G +S K RGK+TTRH L Y+ DTPGF +
Sbjct: 183 ----------LEDRRMETGSLSEKIKRGKNTTRHAEFFSLGEDSYVLDTPGFTSLFPPDI 232
Query: 252 TKQSLAQTFPE 262
+ ++L +PE
Sbjct: 233 SPENLRYFYPE 243
>gi|410632746|ref|ZP_11343397.1| ribosome-associated GTPase [Glaciecola arctica BSs20135]
gi|410147611|dbj|GAC20264.1| ribosome-associated GTPase [Glaciecola arctica BSs20135]
Length = 344
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 133/264 (50%), Gaps = 40/264 (15%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEI 69
+ +D D+ GV V R +++ V+ GD+V+ G + G+IE V R + +
Sbjct: 51 KHADVEDQNGV----VHRCHMRRTITSVVCGDEVLFRPGKDQTLTISGIIEIVQDRKSVL 106
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ S+ P L + R+LV AE I + LNKVEL+D
Sbjct: 107 TRPDFYDGVKPVAANIDQIIIVSSV-IPSLSLNIIDRYLVAAEDVEITPVILLNKVELLD 165
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
+ L+ +S+L+ + GY+ ++ S ++ GLD L L+D+ +V VG SGVGKSSLIN
Sbjct: 166 SQQLSEVESQLNIYRDIGYQIVYTSCKTLTGLDELAACLKDKISVFVGQSGVGKSSLINE 225
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
L P A D+ +G++S SG G+HTT LL GG L
Sbjct: 226 LL--PEA--------------------DEVIGDISDNSGLGQHTTTTAKLLHFPAGGDLI 263
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPE 262
D+PG + +L + + L F E
Sbjct: 264 DSPGVREFALWHLPAERLTNGFKE 287
>gi|83589764|ref|YP_429773.1| GTPase EngC [Moorella thermoacetica ATCC 39073]
gi|123725738|sp|Q2RK09.1|RSGA_MOOTA RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|83572678|gb|ABC19230.1| GTPase EngC [Moorella thermoacetica ATCC 39073]
Length = 290
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 121/238 (50%), Gaps = 25/238 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + + G+IE++ R T + P VANV+ ++++F+
Sbjct: 24 CRLRGRFRLQETVFLPGDRVEIKPVGPGE--GVIEDLKPRRTCLKRPAVANVEQVIIVFA 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P + L R L + I + NK ++ +E GY L S
Sbjct: 82 LREPPPDLELLDRLLFLSGVEDIEAVIVWNKADISKQEYAGL-PELYRQIGYRNLITSAH 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D L L + + GPSGVGKSSL+NA+ +P L
Sbjct: 141 TGQGIDELKALLAGRLSTFAGPSGVGKSSLLNAI----------------QPGL------ 178
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ R GEVS+K GRG+HTTR L+ L GG++ADTPGF++ L +T++ +A FPE+
Sbjct: 179 NLRTGEVSSKGGRGRHTTRQAELIRLPDGGWVADTPGFSRLDLPAITREEVAAYFPEM 236
>gi|257066172|ref|YP_003152428.1| ribosome small subunit-dependent GTPase A [Anaerococcus prevotii
DSM 20548]
gi|256798052|gb|ACV28707.1| ribosome small subunit-dependent GTPase A [Anaerococcus prevotii
DSM 20548]
Length = 290
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 28/241 (11%)
Query: 4 IVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVF 63
I++ + DCN K L+ R + K + LVGD VV+ D DR+ I +
Sbjct: 6 IIKAQKELYYVDCNGKI---LMAKARGNFRVKKIKPLVGDNVVID--DLEDRKAYITEIL 60
Query: 64 QRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
R EI P ++N+D +LL ++ P L + L ++L E + + + L+K++L DE
Sbjct: 61 PRKNEIKRPNISNIDQILLFATIKDPILNLYNLDKYLAMCEYKDMDVVIVLSKIDLCDEN 120
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
+ +++ GY+ + + +L L+++T+ + G SGVGKS+ +N L
Sbjct: 121 EVKDFENIYENIGYKLISLDNFDNFPKEKILDILKNKTSAVSGASGVGKSTFLNNL---- 176
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
+D E G +S KS RGK+TTRH + + +L DTPGF
Sbjct: 177 -------IDIEVE------------TGSISEKSKRGKNTTRHTEIFKIGDESFLFDTPGF 217
Query: 244 N 244
+
Sbjct: 218 D 218
>gi|402574133|ref|YP_006623476.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
meridiei DSM 13257]
gi|402255330|gb|AFQ45605.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
meridiei DSM 13257]
Length = 296
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 116/243 (47%), Gaps = 31/243 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + + GD+V + + + + IE+V R + P +ANVD +L+F+
Sbjct: 25 CSLRGRFRVKDQDFIPGDRVNI--LPEQEDKATIESVITRRNVLSRPTIANVDQAILVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL------HTWGYEP 139
M PK + L R L++ I + K++ EE K L GY
Sbjct: 83 MTSPKPDLNLLDRLLIQVTDAEIEPIIVFTKLDKYKEESGTAPKEGLKITDVYRNIGYTV 142
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S ++ G+ + RL ++ +V+ GPSG GKSSL NAL SP
Sbjct: 143 FEVSSKTGQGIADIAVRLTNKISVLAGPSGAGKSSLFNAL--SPGIQ------------- 187
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+ GE+S KS RG+HTTRHV L+ S GG +ADTPGF+ L ++ + LA
Sbjct: 188 -------LKTGEISNKSKRGRHTTRHVELMVCS-GGLVADTPGFSSLFLPEMKRAELADC 239
Query: 260 FPE 262
FPE
Sbjct: 240 FPE 242
>gi|345302948|ref|YP_004824850.1| ribosome biogenesis GTPase RsgA [Rhodothermus marinus
SG0.5JP17-172]
gi|345112181|gb|AEN73013.1| ribosome biogenesis GTPase RsgA [Rhodothermus marinus
SG0.5JP17-172]
Length = 319
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 104/192 (54%), Gaps = 25/192 (13%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKS 130
AN+D + ++ ++ P+ P + R LV AE IP L LNK++L+ EE ++ +
Sbjct: 94 AANIDFVWIVQAVHLPEPNPGFIDRVLVAAERYEIPAGLILNKIDLMTEEDRPAIDALER 153
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY L SV + GLD+L + LR +T+V+ GPSGVGKSSL+NA+
Sbjct: 154 LYADLGYRVLRTSVVTGEGLDALREALRGKTSVVTGPSGVGKSSLLNAI----------- 202
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
EP L + R VS K+G+G+HTT +V+L PLS GG++ DTPG + +
Sbjct: 203 -----EPDL------NIRTAPVSEKTGKGRHTTTYVALYPLSIGGFVVDTPGLREFGVTD 251
Query: 251 VTKQSLAQTFPE 262
+ L+ F E
Sbjct: 252 LEPAELSHYFVE 263
>gi|325954938|ref|YP_004238598.1| ribosome biogenesis GTPase RsgA [Weeksella virosa DSM 16922]
gi|323437556|gb|ADX68020.1| ribosome biogenesis GTPase RsgA [Weeksella virosa DSM 16922]
Length = 305
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 122/259 (47%), Gaps = 41/259 (15%)
Query: 21 GVELLCVVRALLK----KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV-- 74
G E L +R + K + VGD+V +D D +I ++ +R I+ V
Sbjct: 20 GKEYLARMRGKFRIANIKHTNPIAVGDEVDF-EVD-KDEIAVITHIHERKNYIIRKSVNL 77
Query: 75 --------ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE--- 123
+N+D L+ ++ PK + RFLV AE+ IP+ L NK++ EE
Sbjct: 78 SKKTHIIASNIDLAFLMITLSNPKTSLGFIDRFLVTAEAYHIPVILLFNKIDAYTEEDLQ 137
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
L +KS GYE S E+++GL+ + R++D +++ G SGVGKS+L+N L
Sbjct: 138 ELERYKSIYQPIGYESFSISAETEVGLEEVKNRMKDSVSMVSGHSGVGKSTLLNTL---- 193
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
+P L D + +VS + +G+HTT + P GG++ DTPG
Sbjct: 194 ------------DPTL------DLKTHQVSDFNSKGQHTTTFAQMYPWPFGGFIIDTPGI 235
Query: 244 NQPSLLKVTKQSLAQTFPE 262
+ L+ KQ L FPE
Sbjct: 236 KEFGLVHFEKQELQNYFPE 254
>gi|392394781|ref|YP_006431383.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390525859|gb|AFM01590.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 297
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 119/250 (47%), Gaps = 33/250 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + +G IE V R ++ P +ANVD L+F+
Sbjct: 25 CSLRGRFRIRNQEFLPGDRVKI--LPGTGNKGTIEEVETRRNSLVRPTIANVDQAFLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL--------HTWGY 137
P + L R +V+ ++ I + LNK++L E NT + GY
Sbjct: 83 CVSPTPDLNLLDRLIVQVAASQIKPIIILNKIDLGSLEEKNTAGNTFPADGLDFYRELGY 142
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
E + S ++ GL L + + + V+ GPSGVGKSSL+NAL SP
Sbjct: 143 ELVKVSTKTGEGLAELQEHINGKVNVLAGPSGVGKSSLVNAL--SPGL------------ 188
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ + G+VS K RG+HTTRHV L+ + G G LADTPGF+ L + ++ L
Sbjct: 189 --------ELKTGDVSRKLKRGRHTTRHVELM-VCGEGLLADTPGFSSLYLPHMKREELT 239
Query: 258 QTFPEVCAVG 267
F E G
Sbjct: 240 DYFREFQDAG 249
>gi|345859742|ref|ZP_08812076.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus sp.
OT]
gi|344327199|gb|EGW38643.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus sp.
OT]
Length = 295
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 116/243 (47%), Gaps = 32/243 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + + IE V R + P +ANVD LL+F+
Sbjct: 25 CSLRGRFRVKDQDFLPGDRVRI--LPEEGDKATIEAVEPRRNALSRPVIANVDQALLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSR------LHTWGYEP 139
M PK + L R L++ GI + K++ E L T GY
Sbjct: 83 MTSPKPDLNLLDRLLIQVTEAGIEPIIVFTKLDKY-EAALTTGAEEPSITDVYRQIGYTV 141
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S E+ G++ + +L D+ +V+ GPSG GKSSL NAL SP
Sbjct: 142 FEVSNETGQGIEEVRAQLVDKVSVLAGPSGAGKSSLFNAL--SP---------------- 183
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G K + GE+S KS RG+HTTRHV L+ + GG +ADTPGF+ L + + LA
Sbjct: 184 GKKL----KTGEISLKSKRGRHTTRHVELM-VCAGGLVADTPGFSSLFLPPMKRAELAGC 238
Query: 260 FPE 262
FPE
Sbjct: 239 FPE 241
>gi|315640406|ref|ZP_07895517.1| ribosome small subunit-dependent GTPase A [Enterococcus italicus
DSM 15952]
gi|315483831|gb|EFU74316.1| ribosome small subunit-dependent GTPase A [Enterococcus italicus
DSM 15952]
Length = 293
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 118/238 (49%), Gaps = 27/238 (11%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R +K+K LVGD+VV S + D G I + R E++ P VANVD +++ S+ +
Sbjct: 27 RGNFRKLKISPLVGDEVVFESTNQTD--GYILEMLPRKNELVRPAVANVDQAVIVTSLVE 84
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH-TWGYEPLFCSVESK 147
P L RFLV I + L KV++ DEE ++ + GY+ + + E+
Sbjct: 85 PNFSYNLLDRFLVTLAHQSIEPIIYLTKVDIFDEEEKIDEIEHIYGSIGYK-VIVAKETS 143
Query: 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
+D L D+ TV +G SG GKS+L+N + P L K
Sbjct: 144 EAIDELEALFSDKLTVFMGQSGAGKSTLLNQIL----------------PELQLK----- 182
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA 265
GE+S GRG+HTTRHV LL ++ GG +ADTPGF+ L + L + FPE A
Sbjct: 183 -TGEISDALGRGRHTTRHVELLEIA-GGLVADTPGFSAIDFLSIEAVELPREFPEFVA 238
>gi|365925222|ref|ZP_09447985.1| GTPase [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420266580|ref|ZP_14769038.1| GTPase [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394425160|gb|EJE98176.1| GTPase [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 291
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 34/228 (14%)
Query: 42 GDKVVVGSIDWVDRR------GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFA 95
G+ +VG DWV+ + G I + +R E++ PPVAN+D+ +++ + +PK
Sbjct: 35 GEAPLVG--DWVEFKADNQNEGYILRIEKRKNELIRPPVANIDYAIVVTACKEPKFSSNL 92
Query: 96 LTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF-CSVESKLGLDSLL 154
L R LV E I L +KV+L+ EE K + Y+ ++ C + S + +L
Sbjct: 93 LDRQLVMLEKNQITPLLFFSKVDLLTEEEFLEIKQVVAD--YQKIYDCQLGSLDSVVALT 150
Query: 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214
++ + +T V++G +G GKS+L+N L +P L + GEVS
Sbjct: 151 EKFQQKTVVVMGQTGAGKSTLLNNL----------------QPKLKLE------TGEVSK 188
Query: 215 KSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RGKHTTR V+LLP++ G +ADTPGF+ LL++ K+ LA+ FP+
Sbjct: 189 ALSRGKHTTRKVTLLPIN-GNLIADTPGFSSFDLLEIKKEELAKYFPD 235
>gi|451344178|ref|ZP_21913238.1| ribosome small subunit-dependent GTPase A [Eggerthia catenaformis
OT 569 = DSM 20559]
gi|449336892|gb|EMD16060.1| ribosome small subunit-dependent GTPase A [Eggerthia catenaformis
OT 569 = DSM 20559]
Length = 288
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 29/208 (13%)
Query: 54 DRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLA 113
+ G I+ + R + PP+AN+D LL+FS+ P + L RFL ES I +
Sbjct: 51 NNEGYIQEIKPRKNMLERPPIANIDQALLVFSITHPDFDSLLLDRFLALVESRHIKPFII 110
Query: 114 LNKVELVDEEVLNTWKSRLHTWGYEPL-FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGK 172
+ K++L + +++ K+ + PL F S + K+GL+ + L+D+ TVI G SGVGK
Sbjct: 111 ITKIDL-NYDLIEKIKTDYSPY---PLYFVSSKKKIGLEEVKALLKDKVTVITGQSGVGK 166
Query: 173 SSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS 232
SSL+NAL D+ E E+S GRGKHTTRH L+ +
Sbjct: 167 SSLLNAL----------DIQLNIE------------TNEISEALGRGKHTTRHTELIKMY 204
Query: 233 GGGYLADTPGFNQPSLLKVTKQSLAQTF 260
GGY+ADTPGF+ L +T + L+ ++
Sbjct: 205 -GGYVADTPGFSSLE-LDLTAKELSVSY 230
>gi|282878180|ref|ZP_06286976.1| ribosome small subunit-dependent GTPase A [Prevotella buccalis ATCC
35310]
gi|281299598|gb|EFA91971.1| ribosome small subunit-dependent GTPase A [Prevotella buccalis ATCC
35310]
Length = 310
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 25/193 (12%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL- 132
AN+D LL+ ++ QP+ + RFL AE+ +P+ L NK +L++++ + +
Sbjct: 85 AANLDQALLIITIKQPETSTTFIDRFLAGAEAYRVPVVLVFNKTDLLNDDERRYQQQMVT 144
Query: 133 --HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
T GY + S E+ +G+D L L+ + T++ G SGVGKS+LINA+ PHA
Sbjct: 145 LYETIGYPCIEISAETGMGIDQLQTLLKQKVTLVSGNSGVGKSTLINAI--IPHA----- 197
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
DQR E+S G G HTT ++ L+ GGYL DTPG
Sbjct: 198 ---------------DQRTAEISNAHGTGMHTTTFSEMIELAEGGYLIDTPGIKGFGTFD 242
Query: 251 VTKQSLAQTFPEV 263
+ ++ L F E+
Sbjct: 243 IEREELTSYFKEI 255
>gi|157149972|ref|YP_001449517.1| ribosome-associated GTPase [Streptococcus gordonii str. Challis
substr. CH1]
gi|157074766|gb|ABV09449.1| predicted ribosome small subunit-dependent GTPase A [Streptococcus
gordonii str. Challis substr. CH1]
Length = 292
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 119/238 (50%), Gaps = 33/238 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-EEVLNTWKSRLHTWGYEPLFCSVES 146
+P P L RFLV E GI L ++K++L++ E L+ + T GY+ +V+S
Sbjct: 84 EPDFNPNLLDRFLVLLEHKGIHPILYISKLDLLERENELDEFLQVYRTIGYD----AVQS 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
++ LL L D+ TV +G +GVGKS+L+N + A D+
Sbjct: 140 ---VEELLPLLADKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIA 231
>gi|422809900|ref|ZP_16858311.1| Ribosome small subunit-stimulated GTPase EngC [Listeria
monocytogenes FSL J1-208]
gi|378751564|gb|EHY62152.1| Ribosome small subunit-stimulated GTPase EngC [Listeria
monocytogenes FSL J1-208]
Length = 291
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 113/241 (46%), Gaps = 30/241 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V + D G I +V R ++ PPVAN+D +L+FS
Sbjct: 25 CRARGNFRKRNISPLVGDDVEFQIENKTD--GYILDVMSRENALVRPPVANIDIAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P RFLV E I + ++K++L E E + +K GY+
Sbjct: 83 AVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 143 NDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL----------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+ + + L FPE
Sbjct: 184 -----KTAEISNSLGRGKHTTRHVELMPI-GDGFVADTPGFSSIEWDDLQPEILQFCFPE 237
Query: 263 V 263
+
Sbjct: 238 M 238
>gi|352518690|ref|YP_004888007.1| putative ribosome small subunit-dependent GTPase A [Tetragenococcus
halophilus NBRC 12172]
gi|348602797|dbj|BAK95843.1| putative ribosome small subunit-dependent GTPase A [Tetragenococcus
halophilus NBRC 12172]
Length = 292
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 114/225 (50%), Gaps = 30/225 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD VV S + + G + + R ++L PPVANVD +++ S+ +P+ F L RF
Sbjct: 38 LVGDYVVFESENLTE--GYLLEILPRKNKLLRPPVANVDQSVIVISLTEPQFSYFLLDRF 95
Query: 100 LVEAESTGIPLTLALNKVEL-VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
L+ E I + L+K +L V E++ + GY + + E + S LQ L
Sbjct: 96 LISIEYEDIEPLIYLSKADLSVAPELIEEIATTYRKIGYTVIVSTEEKAM---SNLQNLF 152
Query: 159 DQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
+ TV G SG GKS+L+N L + A E+S G
Sbjct: 153 PKCLTVFTGQSGAGKSALLNRLMPQLNLETA----------------------EISDALG 190
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RG+HTTRHV LLP++ G +ADTPGF+ + +T++ LA+ FPE
Sbjct: 191 RGRHTTRHVELLPVA-DGLVADTPGFSAINFSTITERELAKQFPE 234
>gi|340751993|ref|ZP_08688803.1| ribosome biogenesis GTPase RsgA [Fusobacterium mortiferum ATCC
9817]
gi|229420960|gb|EEO36007.1| ribosome biogenesis GTPase RsgA [Fusobacterium mortiferum ATCC
9817]
Length = 268
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 30/253 (11%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
+R +LK+ + + D VVG I + I NV +R + P VAN+D+L++ F+
Sbjct: 1 MRGILKRKESK----DNCVVGDIVEISEDNYIINVEERKNLVERPLVANIDYLVIQFAGK 56
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL---HTWGYEPLFCSV 144
P ++ L L+ + I + +NK++L+ E L K L + + S
Sbjct: 57 DPDIDYERLNILLLRSFYYKIKPVIIINKIDLLSAEELEEVKKNLEFLNKLDIKYFLISQ 116
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ +G++ L L+D+ T GPSGVGKSS+IN L++
Sbjct: 117 KENIGIEELKVFLKDKITAFGGPSGVGKSSIINLLQNEKKLE------------------ 158
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEV 263
GE S + RGKHTT+ +LL L GGGY+ DTPGF+ L + Q L FPE
Sbjct: 159 ----TGETSKRLRRGKHTTKDTNLLELIGGGYIIDTPGFSSVELPDIKDAQELIALFPEF 214
Query: 264 CAVGLLYMIHMLH 276
G + LH
Sbjct: 215 TNRGNCKFNNCLH 227
>gi|162447122|ref|YP_001620254.1| RNA-binding GTPase [Acholeplasma laidlawii PG-8A]
gi|161985229|gb|ABX80878.1| RNA-binding GTPase [Acholeplasma laidlawii PG-8A]
Length = 294
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 104/190 (54%), Gaps = 25/190 (13%)
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
MI V +R E++ P VAN+D +LL+FS +P L +FLV + + + ++KV
Sbjct: 56 MITEVLERKNELIRPDVANIDQVLLVFSAMRPDFSFNLLDKFLVILKHHELTPVIVVSKV 115
Query: 118 ELVDEEVLNTWKSRLHTWG--YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSL 175
+L+ +E L + K L + Y+ + + ++++G+D+L D+ T++ G +G GKS+L
Sbjct: 116 DLMTDENLKSLKEDLKFYEPFYDIHYVNSKARIGIDTLDGIFEDKITILAGQTGAGKSTL 175
Query: 176 INALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235
+NALR P L + + E+S GRGKHTTRH L GGG
Sbjct: 176 LNALR----------------PEL------ELKTQEISDALGRGKHTTRHSELYEF-GGG 212
Query: 236 YLADTPGFNQ 245
Y+ DTPGF++
Sbjct: 213 YICDTPGFSK 222
>gi|237809228|ref|YP_002893668.1| ribosome-associated GTPase [Tolumonas auensis DSM 9187]
gi|237501489|gb|ACQ94082.1| ribosome small subunit-dependent GTPase A [Tolumonas auensis DSM
9187]
Length = 344
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 128/264 (48%), Gaps = 40/264 (15%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTEI 69
+ +D D G C +R ++ V+ GD V+ GS G++E V R + +
Sbjct: 49 KHADIEDSNGEIHRCNMRRTIES----VVTGDHVIWRAGSEALQGISGVVEAVRPRQSVL 104
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ ++ P+ + R+LV AE IP L LNK++L+D
Sbjct: 105 TRPDFYDGIKPVAANIDQIVIVSAV-LPEFSTNIVDRYLVAAEHVEIPPLLVLNKIDLLD 163
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
+ + +L + GY L S E++ GLD L +L+D+ +V VG SGVGKSSLINA
Sbjct: 164 DISREQLERKLDIYRNLGYPLLNVSCETEHGLDELQAQLKDKVSVFVGQSGVGKSSLINA 223
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
L PHA +GE+S +SG G+HTT L + GG L
Sbjct: 224 LH--PHAKAV--------------------IGEISGQSGLGQHTTTTARLYHFASGGMLI 261
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPE 262
D+PG + SL + + + F E
Sbjct: 262 DSPGIREFSLWHLENERVTWCFKE 285
>gi|407698702|ref|YP_006823489.1| GTPase RsgA [Alteromonas macleodii str. 'Black Sea 11']
gi|407247849|gb|AFT77034.1| GTPase RsgA [Alteromonas macleodii str. 'Black Sea 11']
Length = 347
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 127/264 (48%), Gaps = 40/264 (15%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDR--RGMIENVFQRSTEI 69
+ +D D +GV V R +++ V+ GDKV D + G+IE V R + +
Sbjct: 51 KHADVEDASGV----VSRCHIRRTVDSVVCGDKVFFSKGDEAESGVSGVIEIVKDRHSVL 106
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ ++ P L + R+LV E GI + LNKVEL+
Sbjct: 107 TRPDYYDGIKPIAANIDRIIVVSAI-LPTLSLNIIDRYLVACEDIGITPLIVLNKVELLS 165
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
EE T +L T+ GYE LF S ++ G+ L + L D +V VG SGVGKSSLIN
Sbjct: 166 EEERTTVTEQLKTYENLGYEVLFTSCKTGEGISKLNEYLNDNISVFVGQSGVGKSSLINQ 225
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
+ P A D+ G++S SG G+HTT LL L GG L
Sbjct: 226 VL--PDA--------------------DELTGDISDNSGLGQHTTTAAKLLHLPAGGDLI 263
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPE 262
D+PG + SL + + + F E
Sbjct: 264 DSPGVREFSLWHIPTERITWGFIE 287
>gi|387880368|ref|YP_006310671.1| putative GTPase EngC [Streptococcus parasanguinis FW213]
gi|386793817|gb|AFJ26852.1| putative GTPase EngC [Streptococcus parasanguinis FW213]
Length = 353
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 120/240 (50%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I ++ R ++ PP+ N+D +++ S
Sbjct: 87 ARGNFRKKGQTPYVGDQVEFSAEE--NSEGYILSIAPRKNSLVRPPIVNIDQAVVIMSAK 144
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L+ D E ++ ++ GY+ +
Sbjct: 145 EPDFNANLLDRFLVLLEHKGIHPIVYISKLDLLEDMEDIHYYQGIYQAIGYDFV------ 198
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L ++ LL L +QTTV +G +GVGKS+L+N + A D+ +
Sbjct: 199 -LSIEELLPLLTNQTTVFMGQTGVGKSTLLNKI--------APDL--------------E 235
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 236 LETGEISDSLGRGRHTTRAVSFYHLNGGK-IADTPGFSSLDYEVTTSEDLNQAFPEIADV 294
>gi|410612134|ref|ZP_11323217.1| ribosome-associated GTPase [Glaciecola psychrophila 170]
gi|410168325|dbj|GAC37106.1| ribosome-associated GTPase [Glaciecola psychrophila 170]
Length = 344
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 40/264 (15%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEI 69
+ +D D+ G V R +++ V+ GD+V+ G + G+IE V R + +
Sbjct: 51 KHADVEDRAGT----VHRCHMRRTINSVVCGDEVLFRPGKDQTLSISGIIEIVQDRKSVL 106
Query: 70 LDP-------PVA-NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
P PVA N+D ++++ S+ P L + R+LV AE I + LNKVEL+D
Sbjct: 107 TRPDFYDGVKPVAANIDQIIIVSSV-LPSLSLNIIDRYLVAAEDVEITPVVLLNKVELLD 165
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
+ LN +S+L+ + GY+ ++ S ++ GLD L L+D+ +V VG SGVGKSSLIN
Sbjct: 166 PQQLNEVESQLNIYRDIGYQIVYTSCKTLTGLDELAVCLKDKVSVFVGQSGVGKSSLINE 225
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
L P A D+ +G++S SG G+HTT LL GG L
Sbjct: 226 LL--PEA--------------------DEIIGDISDNSGLGQHTTTTAKLLHFPDGGDLI 263
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPE 262
D+PG + +L + + L F E
Sbjct: 264 DSPGVREFALWHLPAERLTNGFRE 287
>gi|322391322|ref|ZP_08064792.1| GTP-binding protein [Streptococcus peroris ATCC 700780]
gi|321145748|gb|EFX41139.1| GTP-binding protein [Streptococcus peroris ATCC 700780]
Length = 301
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 113/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 50 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 109
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ H GY+ V SK + LL L D+ TV
Sbjct: 110 HKGIHPIIYISKMDLLEDGGELDFYEQTYHAIGYD----FVTSK---EELLPLLTDKVTV 162
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 163 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 200
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 201 RAVSFYNLNGGK-IADTPGFSSLDYEVSTSEDLNQAFPELASV 242
>gi|295398478|ref|ZP_06808515.1| ribosome-associated GTP-binding protein [Aerococcus viridans ATCC
11563]
gi|294973293|gb|EFG49083.1| ribosome-associated GTP-binding protein [Aerococcus viridans ATCC
11563]
Length = 310
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R + + LVGD V + + + G + + R ++++ P VANVD LL+ S+
Sbjct: 42 ARGQFRNTQTTPLVGDFVEFQANNT--KEGYVMKILPRYSQMIRPAVANVDVALLVASVT 99
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-------GYEPL 140
+P+++P L RFLV ES I L +K++L D + K R+ + GY+ +
Sbjct: 100 EPQIQPKLLDRFLVYLESENIEPILYFSKMDLTD-QASQADKDRIDQFIKVYKEVGYQ-V 157
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S + D L + ++T V+VG SGVGKS+L+N L P L
Sbjct: 158 ILSTDLDGNFDQLKDIVANRTMVVVGQSGVGKSTLLNRLL----------------PDLA 201
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
K GE+ST GRG+HTTRH L + GG +ADTPGF+ + ++ K L+ F
Sbjct: 202 IK------TGEISTSLGRGRHTTRHTELHDIFGGK-VADTPGFSSIDIDQLDKVLLSNYF 254
Query: 261 PEVCAV 266
PE+ A+
Sbjct: 255 PEMRAI 260
>gi|421145724|ref|ZP_15605569.1| GTPase [Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
gi|395487879|gb|EJG08789.1| GTPase [Fusobacterium nucleatum subsp. fusiforme ATCC 51190]
Length = 297
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 125/257 (48%), Gaps = 34/257 (13%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 29 CKLRGILKKTNNKYNCVVGDRV------EISEDNSIVEIFKRDNMLIRPIVANVDYLAIQ 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRLHTWGYEPL 140
F+ P ++ + L+ A + + +NK++ + EE L K S L
Sbjct: 83 FAAKHPNIDFERINLLLLTAFYYKVKPIVIINKIDYLTEEELCELKEKLSFLEKISVPMF 142
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+TTVI GPSGVGKSS IN L+S E IL
Sbjct: 143 LISCHQNIGLEEVENFLKDKTTVIGGPSGVGKSSFINFLQS--------------ERIL- 187
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ GE+S + RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 188 -------KTGEISERLQRGKHTTRDSNMIKMKAGGYIIDTPGFSSIEVPNIENREELISL 240
Query: 260 FPEVCAVGLLYMIHMLH 276
FPE ++ ++ H
Sbjct: 241 FPEFSSIESCKFLNCSH 257
>gi|322390322|ref|ZP_08063850.1| GTP-binding protein [Streptococcus parasanguinis ATCC 903]
gi|321142970|gb|EFX38420.1| GTP-binding protein [Streptococcus parasanguinis ATCC 903]
Length = 292
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 120/240 (50%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I ++ R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDQVEFSAEE--NSEGYILSIAPRKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L+ D E ++ ++ GY+ +
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPIVYISKLDLLEDMEDIHYYQGIYQAIGYDFV------ 137
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L ++ LL L +QTTV +G +GVGKS+L+N + A D+ +
Sbjct: 138 -LSIEELLPLLTNQTTVFMGQTGVGKSTLLNKI--------APDL--------------E 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 175 LETGEISDSLGRGRHTTRAVSFYHLNGGK-IADTPGFSSLDYEVTTSEDLNQAFPEIADV 233
>gi|262281834|ref|ZP_06059603.1| ribosome-associated GTPase [Streptococcus sp. 2_1_36FAA]
gi|262262288|gb|EEY80985.1| ribosome-associated GTPase [Streptococcus sp. 2_1_36FAA]
Length = 292
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 116/238 (48%), Gaps = 33/238 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGDKV + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDKVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-EEVLNTWKSRLHTWGYEPLFCSVES 146
+P P L RFLV E GI L ++K++L++ E L+ + T GY+ +
Sbjct: 84 EPDFNPNLLDRFLVLLEHKGIHPILYISKLDLLERENELDEFLQVYRTIGYDVV------ 137
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
++ LL L D+ TV +G +GVGKS+L+N + A D+
Sbjct: 138 -QNVEELLPLLADKITVFMGQTGVGKSTLLNKI--------APDL--------------R 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIA 231
>gi|419799769|ref|ZP_14325093.1| ribosome small subunit-dependent GTPase A [Streptococcus
parasanguinis F0449]
gi|385697152|gb|EIG27599.1| ribosome small subunit-dependent GTPase A [Streptococcus
parasanguinis F0449]
Length = 292
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 120/240 (50%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I ++ R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDQVEFSAEE--NSEGYILSIAPRKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L+ D E ++ ++ GY+ +
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPIVYISKLDLLEDMEDIHYYQGIYQAIGYDFV------ 137
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L ++ LL L +QTTV +G +GVGKS+L+N + A D+ +
Sbjct: 138 -LSIEELLPLLTNQTTVFMGQTGVGKSTLLNKI--------APDL--------------E 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 175 LETGEISDSLGRGRHTTRAVSFYHLNGGK-IADTPGFSSLDYEVTTSEDLNQAFPEIADV 233
>gi|404404684|ref|ZP_10996268.1| GTPase RsgA [Alistipes sp. JC136]
Length = 305
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 125/261 (47%), Gaps = 39/261 (14%)
Query: 21 GVELLCVVRALLKKIKRR----VLVGDKVVVGS-------IDWVDRRGMIENVFQRSTEI 69
GV L C +R L+ R V+VGD+VV S +D RR V +R++ +
Sbjct: 23 GVTLRCRIRGKLRLKGVRSTNPVVVGDEVVCESEGGDCVIVDIEPRRNY---VIRRASNL 79
Query: 70 LDPP---VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN 126
ANVD LL+ ++ P+ RFLV E+ +P T+ L+K++L D E +
Sbjct: 80 SKESHIIAANVDQALLMVTLRSPETPKEFADRFLVTCEAYKVPATILLSKIDLQDAETVA 139
Query: 127 TWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS 186
+++ GY L S + G++ + + L +TT++ G SGVGKS+LI A+
Sbjct: 140 GFRAVYEGAGYRVLEVSAKEGRGVEEVRELLAGRTTLVSGNSGVGKSTLIQAI------- 192
Query: 187 DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246
+P L D R GE+S +G+HTT ++ PL+ GG + DTPG
Sbjct: 193 ---------DPSL------DIRTGEISDSHHKGRHTTTFSTMYPLAEGGAVIDTPGIKGF 237
Query: 247 SLLKVTKQSLAQTFPEVCAVG 267
LL + L FPE+ V
Sbjct: 238 GLLDIDDAELWHYFPEMMRVA 258
>gi|312127900|ref|YP_003992774.1| ribosome small subunit-dependent gtpase a [Caldicellulosiruptor
hydrothermalis 108]
gi|311777919|gb|ADQ07405.1| ribosome small subunit-dependent GTPase A [Caldicellulosiruptor
hydrothermalis 108]
Length = 290
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 26/245 (10%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D G C R + +K LVGD VV+ ++ +I+ + R +++ PP+ANV
Sbjct: 19 DHDGNVYECRARGVFRKDDITPLVGDNVVI--VEKSKGSYVIDKILPRKNQLIRPPIANV 76
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D +++ + P++ AL + LV + + +NK++L DE+ K + +
Sbjct: 77 DIAIVVVASVSPEVSLIALDKLLVNVLKEKVKPVICVNKIDLDDEKTFEMIKQQYSVF-- 134
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ + S ++ G+D L ++ + +V G SGVGKSS++N L
Sbjct: 135 DVIGVSAKTGEGIDKLKDYIQGRISVFAGQSGVGKSSILNCL------------------ 176
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
I G+ +VGE+S K RG+HTTR V LL Y+ADTPGF+ ++ + + L
Sbjct: 177 IPGANL----KVGEISKKIERGRHTTRVVELLRAGEDTYIADTPGFSSIEIMGLLRHELK 232
Query: 258 QTFPE 262
+PE
Sbjct: 233 YYYPE 237
>gi|392529126|ref|ZP_10276263.1| ribosome-associated GTPase [Carnobacterium maltaromaticum ATCC
35586]
gi|414083582|ref|YP_006992290.1| ribosome small subunit-dependent GTPase A [Carnobacterium
maltaromaticum LMA28]
gi|412997166|emb|CCO10975.1| ribosome small subunit-dependent GTPase A [Carnobacterium
maltaromaticum LMA28]
Length = 298
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 118/242 (48%), Gaps = 29/242 (11%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R +K LVGD+V+ S + + G+++ + R E++ P VANVD +++ S +
Sbjct: 28 RGNFRKRNLTPLVGDEVIFESGNQDE--GILKELLPRKNELVRPTVANVDLGVIVMSAVE 85
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVE 145
P L RFLV ES I + L K++L+D+E + K GY + E
Sbjct: 86 PNFSSNLLDRFLVTLESKKIKALIYLTKIDLLDQEQYQEMEQIKVAYEKIGYPVILPKRE 145
Query: 146 -SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
++ L +++ TV +G SG GKS+L+N + A D A
Sbjct: 146 MDHEPIEELTPYFKEKITVFMGQSGAGKSTLLNQI-----APDLA--------------- 185
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
+ G +S GRGKHTTRHV LLPL GG +ADTPGF+ L+V L + FP+
Sbjct: 186 --LKTGVISNALGRGKHTTRHVELLPLY-GGLVADTPGFSSIEFLEVEADELPELFPDFV 242
Query: 265 AV 266
V
Sbjct: 243 EV 244
>gi|257868087|ref|ZP_05647740.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257874639|ref|ZP_05654292.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257802201|gb|EEV31073.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257808803|gb|EEV37625.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
Length = 294
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 112/230 (48%), Gaps = 29/230 (12%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +L+ S+ +P L RF
Sbjct: 38 LVGDEVIFESSNQTD--GYLLEILPRKNELVRPPVANVDQGVLVTSLVEPNFSYNLLDRF 95
Query: 100 LVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR-L 157
LV E GI + L K +LV D + + GY + E + L+ LQR
Sbjct: 96 LVTLEYEGIEPIIFLTKADLVKDLAAMKAIEETYQAIGYHVITSKAEGEDLLE--LQRYF 153
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ TV +G SG GKS+L+N R P + G +S G
Sbjct: 154 PERITVFMGQSGAGKSTLLN--RIVPELA--------------------LETGVISESLG 191
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
RGKHTTRHV LLP+ G +ADTPGF+ L++ L + FP+ AV
Sbjct: 192 RGKHTTRHVELLPIC-DGLVADTPGFSSIDFLEIEAVELPKLFPDFLAVA 240
>gi|312867494|ref|ZP_07727702.1| ribosome small subunit-dependent GTPase A [Streptococcus
parasanguinis F0405]
gi|311096900|gb|EFQ55136.1| ribosome small subunit-dependent GTPase A [Streptococcus
parasanguinis F0405]
Length = 292
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 121/240 (50%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I ++ R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDQVEFSAEE--NSEGYILSIAPRKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L++ E ++ ++ GY+ +
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPIVYISKLDLLENMEDIHYYQGIYQAIGYDFV------ 137
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L ++ LL L +QTTV +G +GVGKS+L+N + A D+ +
Sbjct: 138 -LSIEELLPLLTNQTTVFMGQTGVGKSTLLNKI--------APDL--------------E 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ + T + L Q FPE+ V
Sbjct: 175 LETGEISDSLGRGRHTTRAVSFYHLNGGK-IADTPGFSSLNYEVTTSEDLNQAFPEIADV 233
>gi|385260044|ref|ZP_10038198.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. SK140]
gi|385192718|gb|EIF40114.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. SK140]
Length = 292
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 113/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWV+ G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVEFSAEENSEGYILEIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL L D+ TV
Sbjct: 101 HKGIHPIVYISKMDLLEDSEELDFYEKTYRAIGYD----FVTSK---EELLPLLTDKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIASV 233
>gi|342215157|ref|ZP_08707817.1| ribosome small subunit-dependent GTPase A [Veillonella sp. oral
taxon 780 str. F0422]
gi|341589440|gb|EGS32717.1| ribosome small subunit-dependent GTPase A [Veillonella sp. oral
taxon 780 str. F0422]
Length = 242
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 99/204 (48%), Gaps = 23/204 (11%)
Query: 59 IENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
I+ + R + P +AN+D ++++ + +P + P L R LV + IP L +NK +
Sbjct: 9 IDTIEPRRNSLRRPAIANIDQVIVVVAAREPDIHPLLLDRLLVMIHHSHIPPVLVINKYD 68
Query: 119 LVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
L E+ + KS GY L S + G++ L L + + GPSGVGKSSL+NA
Sbjct: 69 LHTEDTMK-LKSIYENIGYTVLCTSTYTGEGIEELRHVLHGKISAFAGPSGVGKSSLLNA 127
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
+ D + F+ G VS K RG+HTTRH SL L ++
Sbjct: 128 V----------DPNFAFQ------------TGAVSDKIKRGRHTTRHASLYSLDESSFIM 165
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPE 262
DTPGF+ +T + L TFPE
Sbjct: 166 DTPGFSALEHTGMTVEELVHTFPE 189
>gi|402312271|ref|ZP_10831200.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium ICM7]
gi|400370330|gb|EJP23318.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium ICM7]
Length = 305
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 120/249 (48%), Gaps = 25/249 (10%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ++ G C + + +K+ + LVGD V D D G I N+ +R ++ P V
Sbjct: 28 DEGERKGQIFECKAKGIFRKLGVKPLVGDNVDFEITDTKDFEGNIVNIHKRKNALIRPAV 87
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D ++L+ +++ P + L ++L+ + GI + + NK +L ++ L ++++T
Sbjct: 88 ANIDKVVLVLAVESPSPAFYYLDKYLINMSNAGIKVEICWNKTDLNMDKALEY--AKIYT 145
Query: 135 -WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
G++ + S + GL+ L + L+ + +V+ G SGVGKSS+ N L +P A
Sbjct: 146 DAGFKNIIASTFEESGLEDLKEALKGEVSVLAGASGVGKSSITNIL--APKA-------- 195
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
+ VS K RG+HTTRH L + ++ DTPGF K
Sbjct: 196 ------------NMDTNTVSRKIERGRHTTRHSELFMIDSDTFVFDTPGFTSVESPTFDK 243
Query: 254 QSLAQTFPE 262
+ L F E
Sbjct: 244 EELRFHFHE 252
>gi|397906027|ref|ZP_10506854.1| Ribosome small subunit-stimulated GTPase EngC [Caloramator
australicus RC3]
gi|397160941|emb|CCJ34189.1| Ribosome small subunit-stimulated GTPase EngC [Caloramator
australicus RC3]
Length = 293
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 114/237 (48%), Gaps = 24/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD+V + I+ + +G+I+ + +R ++++ PPVANVD ++++F+
Sbjct: 26 CKARGKFRKDNITPLVGDRVYIEKIN--NSQGLIKEIKERKSQLIRPPVANVDQVVVVFA 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L R LV E + + LNK +L ++ S GY+ + +
Sbjct: 84 LKDPDISFTLLDRLLVHVEEKDLDCLICLNKSDLDEDGKFEKVYSIYTEAGYKVIKTNAL 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K GLD L L+ + T GPSGVGKSSL N+L+
Sbjct: 144 KKEGLDELKAFLKGKITAFAGPSGVGKSSLFNSLQDKVKME------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K GRGKHTTRH L+ + YL DTPGF+ L + L F E
Sbjct: 185 ---TGVISEKIGRGKHTTRHAQLIRIDDETYLVDTPGFSTLDLSFIEPNDLQYYFKE 238
>gi|414156317|ref|ZP_11412626.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. F0442]
gi|410872526|gb|EKS20470.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. F0442]
Length = 292
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I ++ R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDQVEFSAEE--NSEGYILSIAPRKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L+++ E + ++ GY+ +
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPIVYISKLDLLEDLEPIRYYQGIYQAIGYDFV------ 137
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L ++ LL L D+TTV +G +GVGKS+L+N + A D+ +
Sbjct: 138 -LSIEELLPLLTDKTTVFMGQTGVGKSTLLNKI--------APDL--------------E 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 175 LETGEISDSLGRGRHTTRAVSFYYLNGGK-IADTPGFSSLDYEVTTSEDLNQAFPEIADV 233
>gi|335029679|ref|ZP_08523186.1| ribosome small subunit-dependent GTPase A [Streptococcus infantis
SK1076]
gi|334268976|gb|EGL87408.1| ribosome small subunit-dependent GTPase A [Streptococcus infantis
SK1076]
Length = 292
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L D+ TV
Sbjct: 101 HKGIHPIVHISKMDLLEDRRELDFYEKTYRAIGYD----FVTSK---EELLPLLTDKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIASV 233
>gi|417917874|ref|ZP_12561431.1| ribosome small subunit-dependent GTPase A [Streptococcus
parasanguinis SK236]
gi|342829695|gb|EGU64043.1| ribosome small subunit-dependent GTPase A [Streptococcus
parasanguinis SK236]
Length = 292
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I ++ R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDQVEFSAEE--NSEGYILSIAPRKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L++ E ++ ++ GY+ +
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPIVYISKLDLLENMEDIHYYQGIYQAIGYDFV------ 137
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L ++ LL L +QTTV +G +GVGKS+L+N + A D+ +
Sbjct: 138 -LSIEELLPLLTNQTTVFMGQTGVGKSTLLNKI--------APDL--------------E 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 175 IETGEISDSLGRGRHTTRAVSFYHLNGGK-IADTPGFSSLDYEVTTSEDLNQAFPEIADV 233
>gi|390566044|ref|ZP_10246572.1| putative ribosome biogenesis GTPase rsgA [Nitrolancetus hollandicus
Lb]
gi|390170707|emb|CCF85915.1| putative ribosome biogenesis GTPase rsgA [Nitrolancetus hollandicus
Lb]
Length = 307
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 120/250 (48%), Gaps = 33/250 (13%)
Query: 24 LLCVVRALLKKIKRR---VLVGDKVVV-------GSIDWVDRRGMIENVFQRSTEILDPP 73
LLC VR +K+ +R+ V VGD+V V G I+ V R + + R TE ++
Sbjct: 29 LLCTVRGSIKRERRKTTPVAVGDRVAVTVTGPGEGVIESVAPRRRVLSRLARGTEDVEQV 88
Query: 74 V-ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL 132
+ AN D ++ +F++ +P+ L RFL+ AE+ + + +NK++L L +
Sbjct: 89 ILANPDQMVAVFAVAEPEPHLRMLDRFLIIAEARNLAAAICVNKIDLDRSGELRRIFAPY 148
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY + S + G+D+L + L + + GPSGVGKSSL+N L A
Sbjct: 149 RAAGYPVIETSAVTGEGIDTLRELLAGKISAFAGPSGVGKSSLLNVLHPGFKA------- 201
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
R+GE+S +G+G+HTT +L+ L Y+ADTPG Q +
Sbjct: 202 ---------------RIGEISAATGKGRHTTTGSTLISLGDETYVADTPGIRQLGFWGID 246
Query: 253 KQSLAQTFPE 262
L FPE
Sbjct: 247 FDRLDTYFPE 256
>gi|347542356|ref|YP_004856992.1| putative GTPase [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985391|dbj|BAK81066.1| putative GTPase [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 295
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 24/224 (10%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
VGDKV + ID+ R G+IE + +R+++ + P ++NV + ++ + +PK+ L + L
Sbjct: 42 VGDKVTIKIIDFEKREGVIEKIHERTSDFIRPQISNVTQVFIVLAYLEPKVNLEMLNKML 101
Query: 101 VEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQ 160
+ E G+ + +NK +L EE ++ Y+ + SV+ ++ ++++ +L +
Sbjct: 102 INFEVEGVKTNIIINKCDLHGEEDDREVNELFKSFPYDVIKVSVKDRININTIKNKLHNN 161
Query: 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220
+ G SGVGKSSL+N + S + D+ +S K RGK
Sbjct: 162 ISCFCGASGVGKSSLLNEIVS----KNIMDIST------------------LSQKIKRGK 199
Query: 221 HTTRHVSLLPLSG-GGYLADTPGFNQPSLLK-VTKQSLAQTFPE 262
HTTR L+ + GYL DTPGF S+ K + L + F E
Sbjct: 200 HTTRFSQLIYIDELDGYLIDTPGFTSVSISKNIGMDDLKEYFIE 243
>gi|379012007|ref|YP_005269819.1| ribosome-associated GTPase RsgA [Acetobacterium woodii DSM 1030]
gi|375302796|gb|AFA48930.1| ribosome-associated GTPase RsgA [Acetobacterium woodii DSM 1030]
Length = 300
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 111/240 (46%), Gaps = 29/240 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG--MIENVFQRSTEILDPPVANVDHLLLL 83
C R +L+ K VGD+V++ S D G MIE++ R L PPV NVD L++
Sbjct: 37 CKARGVLRHQKIIPTVGDEVMIQS----DNPGEWMIESILPRKNIFLRPPVVNVDIGLIV 92
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
FSM PK L LV +ES + + K +L K Y+ F S
Sbjct: 93 FSMTNPKPNLLLLDMLLVSSESQNVEPIVCFTKRDLTSTAEEKEIKEIYQKTPYKLFFFS 152
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+D ++ + +T + GPSGVGKS++ N L AD
Sbjct: 153 QNDNHTMDEIIAEIGGKTAFMAGPSGVGKSTMANYL--------CAD------------- 191
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPE 262
+ G +S K RGKHTTRHV LL GG+L DTPGF+ + ++ + + L + FPE
Sbjct: 192 -QTMETGALSRKLKRGKHTTRHVELLETKNGGFLLDTPGFSSYKISEMIEPEELREYFPE 250
>gi|337282763|ref|YP_004622234.1| GTP-binding protein [Streptococcus parasanguinis ATCC 15912]
gi|335370356|gb|AEH56306.1| GTP-binding protein [Streptococcus parasanguinis ATCC 15912]
Length = 292
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + + + G I ++ R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDQVEFSAEE--NSEGYILSIAPRKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L++ E ++ ++ GY+ +
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPIVYISKLDLLENMEDIHYYQGIYQAIGYDFV------ 137
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L ++ LL L +QTTV +G +GVGKS+L+N + A D+ +
Sbjct: 138 -LSIEELLPLLTNQTTVFMGQTGVGKSTLLNKI--------APDL--------------E 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 175 LETGEISDSLGRGRHTTRAVSFYHLNGGK-IADTPGFSSLDYEVTTSEDLNQAFPEIADV 233
>gi|283780737|ref|YP_003371492.1| ribosome small subunit-dependent GTPase A [Pirellula staleyi DSM
6068]
gi|283439190|gb|ADB17632.1| ribosome small subunit-dependent GTPase A [Pirellula staleyi DSM
6068]
Length = 375
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 122/259 (47%), Gaps = 37/259 (14%)
Query: 20 TGVELLCVVRALLKKI---KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP--- 73
+G + C R +LK + +R V+ +V + G+IE + R+ +
Sbjct: 97 SGEIIRCATRRVLKNLSTDQRHVVAAGDIVYYRPNGTSE-GLIERIEPRANTLSRTSKGR 155
Query: 74 ----VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
VANVD +L++ S +P L+P + R +VEAE TGI + +NKV+LV+ L
Sbjct: 156 QHVIVANVDQVLIVASAAEPSLKPNLIDRMIVEAERTGIRPVVCINKVDLVEPSDLQPIA 215
Query: 130 SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
GY+ L S + G+ L + + + TV+ G SGVGKSS++NA
Sbjct: 216 GVYGQLGYDVLLLSAKENWGISRLRKLVAGKQTVVAGQSGVGKSSILNA----------- 264
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
++N RVG VS ++ +G+HTT L+PL+ GGY+ DTPG L
Sbjct: 265 -IENGLA----------LRVGRVSEENQKGRHTTTTAKLIPLAAGGYVVDTPGIRSFELW 313
Query: 250 KVTKQSLAQTF----PEVC 264
+ + + P VC
Sbjct: 314 DIIPAEVIGYYRDLRPYVC 332
>gi|257877697|ref|ZP_05657350.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257811863|gb|EEV40683.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 294
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 112/230 (48%), Gaps = 29/230 (12%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ S+ +P L RF
Sbjct: 38 LVGDEVIFESSNQTD--GYLLEILPRKNELVRPPVANVDQGVVVTSLVEPNFSYNLLDRF 95
Query: 100 LVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR-L 157
LV E GI + L K +LV D + + GY + E + L+ LQR
Sbjct: 96 LVTLEYEGIEPIIFLTKADLVKDLAAMKAIEETYQAIGYHVITSKAEGEDLLE--LQRYF 153
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ TV +G SG GKS+L+N R P + G +S G
Sbjct: 154 PERITVFMGQSGAGKSTLLN--RIVPELA--------------------LETGVISESLG 191
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
RGKHTTRHV LLP+ G +ADTPGF+ L++ L + FP+ AV
Sbjct: 192 RGKHTTRHVELLPIC-DGLVADTPGFSSIDFLEIEAVELPKLFPDFLAVA 240
>gi|325567728|ref|ZP_08144339.1| ribosome small subunit-dependent GTPase A [Enterococcus
casseliflavus ATCC 12755]
gi|420264357|ref|ZP_14766988.1| ribosome small subunit-dependent GTPase A [Enterococcus sp. C1]
gi|325158501|gb|EGC70648.1| ribosome small subunit-dependent GTPase A [Enterococcus
casseliflavus ATCC 12755]
gi|394768330|gb|EJF48258.1| ribosome small subunit-dependent GTPase A [Enterococcus sp. C1]
Length = 294
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 112/230 (48%), Gaps = 29/230 (12%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ S+ +P L RF
Sbjct: 38 LVGDEVIFESSNQTD--GYLLEILPRKNELVRPPVANVDQGVVVTSLVEPNFSYNLLDRF 95
Query: 100 LVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR-L 157
LV E GI + L K +LV D + + GY + E + L+ LQR
Sbjct: 96 LVTLEYEGIEPIIFLTKADLVKDLAAMKAIEETYQAIGYHVITSKAEGEDLLE--LQRYF 153
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ TV +G SG GKS+L+N R P + G +S G
Sbjct: 154 PERITVFMGQSGAGKSTLLN--RIVPELA--------------------LETGVISESLG 191
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
RGKHTTRHV LLP+ G +ADTPGF+ L++ L + FP+ AV
Sbjct: 192 RGKHTTRHVELLPIC-DGLVADTPGFSSIDFLEIEAVELPKLFPDFLAVA 240
>gi|403667668|ref|ZP_10932968.1| GTPase EngC [Kurthia sp. JC8E]
Length = 293
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 120/241 (49%), Gaps = 34/241 (14%)
Query: 29 RALLKKIKRRVLVGDKV---VVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
R + +K LVGD V V G+ D G + V QR E++ PP+AN+D LL+FS
Sbjct: 28 RGVFRKRGITPLVGDFVEYEVEGNND-----GTLTKVEQRKNELVRPPIANIDQALLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+ +P+ L RFLV ES I + L K++L+ E + + + GY +
Sbjct: 83 VVEPEFNTILLDRFLVVLESFHIQPLICLTKMDLLPETKQDAIQAYVKDYEAIGYTIIQT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + ++ L+ +TTV+ G SGVGKS+L+N L P L
Sbjct: 143 FKDDATLMSKVVPYLKGKTTVLAGQSGVGKSTLLNTLM----------------PQL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + G +S GRGKHTTRHV L+ ++ G +ADTPGF+ + ++ L FP+
Sbjct: 184 ---ELKTGVISDALGRGKHTTRHVELIEVA-EGLIADTPGFSSFDFDTIEREELTYCFPD 239
Query: 263 V 263
+
Sbjct: 240 L 240
>gi|374582939|ref|ZP_09656033.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
youngiae DSM 17734]
gi|374419021|gb|EHQ91456.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
youngiae DSM 17734]
Length = 300
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 117/245 (47%), Gaps = 31/245 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVD---RRGMIENVFQRSTEILDPPVANVDHLLL 82
C +R + + L GD+V + S + + IE+V R + P +ANVD +L
Sbjct: 25 CSLRGRFRVKDQEFLPGDQVSILSEEAEGPHLAKATIESVGSRRNALTRPAIANVDQAIL 84
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT-----WGY 137
+F+M P+ + L R L++ I L K++ + LN T GY
Sbjct: 85 VFAMTSPRPDLNLLDRLLIQVIEADIEPILVFTKLDKYRADPLNDGPDHALTDVYRNIGY 144
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ S E+ G++ + L ++ +V+ GPSG GKSSL NAL SP
Sbjct: 145 KVFEVSSETGQGIEEIRAHLANKISVLAGPSGAGKSSLFNAL--SP-------------- 188
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
G K + G +S KS RG+HTTRHV L+ + GG +ADTPGF+ L ++ + L
Sbjct: 189 --GKKL----KTGRISHKSKRGRHTTRHVELM-VCAGGLVADTPGFSSLYLPEMKRAELT 241
Query: 258 QTFPE 262
FPE
Sbjct: 242 DFFPE 246
>gi|309798997|ref|ZP_07693254.1| ribosome small subunit-dependent GTPase A [Streptococcus infantis
SK1302]
gi|308117401|gb|EFO54820.1| ribosome small subunit-dependent GTPase A [Streptococcus infantis
SK1302]
Length = 292
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWV+ G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVEFSAEENSEGYILEIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL L D+ TV
Sbjct: 101 HKGIHPIVYISKMDLLEDSEELDFYQQTYRAIGYD----FVTSK---EELLPLLTDKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEGLNQAFPEIAYV 233
>gi|449134431|ref|ZP_21769932.1| ribosome small subunit-dependent GTPase A [Rhodopirellula europaea
6C]
gi|448887061|gb|EMB17449.1| ribosome small subunit-dependent GTPase A [Rhodopirellula europaea
6C]
Length = 366
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 128/264 (48%), Gaps = 45/264 (17%)
Query: 20 TGVELLCVVRALLKKI---KRRVLV-GDKV---------------VVGSIDWVD-RRGMI 59
GV C VR +LK + +R V+V GD+V G I+ V+ R GMI
Sbjct: 80 NGVLYACAVRQVLKSLSTSQRNVIVAGDRVWFRSESRDGVSLKSEADGMIERVEPRTGMI 139
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
+ +L V+N+D +L++ S +QP ++P + R ++ A I + +NKV+L
Sbjct: 140 SRTSRGRQHVL---VSNIDAMLIIASAEQPGIKPALIDRMILTAHQCQIEPIVIINKVDL 196
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+D L + GY L S E+ +D L L+++ T + G SGVGKSSL+NA+
Sbjct: 197 IDLVDLQPLIGVYSSLGYRVLPTSAETGQNVDYLRALLKNRQTALAGQSGVGKSSLLNAV 256
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
+P LG +G VS+ + +GKHTT L+PL+ GG + D
Sbjct: 257 ----------------QPGLGLA------IGAVSSDNDKGKHTTTASQLIPLADGGAVFD 294
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEV 263
TPG Q L ++ +A P++
Sbjct: 295 TPGIRQFQLWDISASEVAGLMPDL 318
>gi|152989875|ref|YP_001355597.1| ribosome-associated GTPase [Nitratiruptor sp. SB155-2]
gi|151421736|dbj|BAF69240.1| ribosome-associated GTPase [Nitratiruptor sp. SB155-2]
Length = 289
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 114/216 (52%), Gaps = 26/216 (12%)
Query: 31 LLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPK 90
L KK+K+ + V G I VD + +IE++ R + PPVANVD++L++ +M P
Sbjct: 30 LRKKVKKEKIYAGDYVKGEI--VDNQFVIESIEPRRNLLTRPPVANVDNVLVVMAMKTPD 87
Query: 91 LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-GYEPLFCSVESKLG 149
+ + L FL E GI + NK++L++E+ RL++ GYE + S ++ G
Sbjct: 88 FDSYLLDNFLAVYEFKGIEPVIVFNKIDLLEEKEELEKWMRLYSSVGYETIAISAQNSDG 147
Query: 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209
++ + ++ T++ GPSG GKS+L++ L LG + +
Sbjct: 148 IEKIKSYIQGDITIVAGPSGAGKSTLLSRL-------------------LGV----EIKT 184
Query: 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ 245
G+V+ K GRG+HTT V+L +LADTPGF++
Sbjct: 185 GQVNKKIGRGRHTTTAVTLYRFDNSSFLADTPGFSK 220
>gi|419780523|ref|ZP_14306370.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK100]
gi|383185121|gb|EIC77620.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK100]
Length = 292
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 113/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERENSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ T GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDREELSFYQQTYRTIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSSAEDLNQAFPEIASV 233
>gi|417934057|ref|ZP_12577377.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis bv.
2 str. F0392]
gi|340770627|gb|EGR93142.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis bv.
2 str. F0392]
Length = 292
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 113/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ + GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDREELSFYQQTYRSIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 233
>gi|422413363|ref|ZP_16490322.1| ribosome small subunit-dependent GTPase A, partial [Listeria
innocua FSL S4-378]
gi|313618297|gb|EFR90350.1| ribosome small subunit-dependent GTPase A [Listeria innocua FSL
S4-378]
Length = 248
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 28/210 (13%)
Query: 57 GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNK 116
G I +V R ++ PPVAN+D +L+FS +P RFLV E I + ++K
Sbjct: 11 GYILDVLSRENALVRPPVANIDIAILVFSAVEPDFSTNLADRFLVAIEKEDIQPVICISK 70
Query: 117 VEL---VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKS 173
++L ++E + +K T GY+ + E +++ + +T VI G SGVGKS
Sbjct: 71 MDLATDAEKEQIAIYKEVYETIGYDVFVTNDEPD--KEAIKDYISGKTAVIAGQSGVGKS 128
Query: 174 SLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG 233
+L+N+L S + E+S GRGKHTTRHV L+P+ G
Sbjct: 129 TLLNSLNSDLTL----------------------KTAEISNSLGRGKHTTRHVELMPI-G 165
Query: 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
G++ADTPGF+ + ++L FPE+
Sbjct: 166 DGFVADTPGFSSIEWDDLQPETLQFCFPEM 195
>gi|331265646|ref|YP_004325276.1| ribosome-associated GTPase [Streptococcus oralis Uo5]
gi|326682318|emb|CBY99935.1| ribosome-associated GTPase [Streptococcus oralis Uo5]
Length = 292
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 112/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S +P L RFLV E
Sbjct: 41 DWVDFSAEEYSEGYILKIHERKNSLVRPPIVNIDQAVVIMSAKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL L +TTV
Sbjct: 101 HKGIHPVVYISKMDLLEDREELSFYQQTYGDIGYD----FVTSK---EELLPLLTGKTTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 233
>gi|373469060|ref|ZP_09560277.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
gi|371765152|gb|EHO53498.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
Length = 305
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 23/245 (9%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
++ G C + + + I + LVGD V D D G + + +R ++ P VAN+
Sbjct: 31 ERKGQIFSCKAKGIFRNIGMKPLVGDNVDFEITDIRDLEGNVVKIHKRKNALIRPAVANI 90
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++L+ +++ P + L ++L+ + GI + + NK +L + + + + G+
Sbjct: 91 DKVVLVLAVESPSPAFYYLDKYLINMSNAGIRVDICWNKTDLNEAKAIE-YAEIYENVGF 149
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ + S +++ GLD L + L+ + +V+ G SGVGKSS+ N L +P A
Sbjct: 150 KNIMASTKTEGGLDKLREALKGEVSVLAGASGVGKSSITNIL--APKA------------ 195
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ VS K RG+HTTRH L + ++ DTPGF K+ L
Sbjct: 196 --------NMDTNTVSRKIERGRHTTRHSELFMIDDDTFVFDTPGFTSVESPTFDKEELR 247
Query: 258 QTFPE 262
F E
Sbjct: 248 FHFHE 252
>gi|393781683|ref|ZP_10369877.1| ribosome small subunit-dependent GTPase A [Bacteroides salyersiae
CL02T12C01]
gi|392676287|gb|EIY69725.1| ribosome small subunit-dependent GTPase A [Bacteroides salyersiae
CL02T12C01]
Length = 310
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 25/193 (12%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
AN+D +L+ +++ P+ + RFL AE+ IP+ L NKV+ DE+ L+ S ++
Sbjct: 85 AANLDQCMLVVTINYPETSTIFIDRFLASAEAYRIPVKLVFNKVDAYDEDELHYLDSLIN 144
Query: 134 TW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
+ GY S +SK G+D++ + L+ + T+ G SGVGKS+LINA+
Sbjct: 145 LYTHIGYPCFKISAKSKQGIDAIQKELKGRITLFSGHSGVGKSTLINAILPG-------- 196
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
++ + E+ST +G HTT + P+ GGY+ DTPG
Sbjct: 197 --------------QEVKTAEISTYHNKGMHTTTFSEMFPVERGGYIIDTPGIKGFGTFN 242
Query: 251 VTKQSLAQTFPEV 263
+ ++ + FPE+
Sbjct: 243 MEEEEIGHYFPEI 255
>gi|302874754|ref|YP_003843387.1| ribosome small subunit-dependent GTPase A [Clostridium
cellulovorans 743B]
gi|307690631|ref|ZP_07633077.1| ribosome-associated GTPase [Clostridium cellulovorans 743B]
gi|302577611|gb|ADL51623.1| ribosome small subunit-dependent GTPase A [Clostridium
cellulovorans 743B]
Length = 293
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 103/237 (43%), Gaps = 26/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + VGD V ++ + +G I + +R +L P VANV ++F+
Sbjct: 29 CKARGKFRTHNISPYVGDVV---ELNIEEDKGFIIKISERKNLLLRPVVANVTQAFVVFA 85
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FL+ E I + NKV+LVD + GY+ +F +
Sbjct: 86 LKNPDVNLTLLNKFLILCEYNEIKPIICFNKVDLVDNPEEELAVKMIKQTGYDYIFLKAK 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
K L+ ++ L + ++ GPSG GKS+L N + P
Sbjct: 146 EKYNLELVMDHLNENISIFCGPSGAGKSTLFNGMVGKPL--------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+GEVS K RGKHTTRH L+ GY+ DTPGF+ + + L PE
Sbjct: 185 -MEIGEVSEKLKRGKHTTRHSELIAFH-QGYIVDTPGFSSLEFDFIDEVDLKNYLPE 239
>gi|269928999|ref|YP_003321320.1| ribosome small subunit-dependent GTPase A [Sphaerobacter
thermophilus DSM 20745]
gi|269788356|gb|ACZ40498.1| ribosome small subunit-dependent GTPase A [Sphaerobacter
thermophilus DSM 20745]
Length = 317
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 123/248 (49%), Gaps = 33/248 (13%)
Query: 26 CVVRALLKKIKRR---VLVGDKVVV-------GSIDWVDRRGMIENVFQRSTEILDPPV- 74
C VR +LK+ +R+ V VGD+V + G I+ V R + R TE ++ +
Sbjct: 42 CTVRGVLKRARRKTDPVAVGDRVEITLTGPGEGVIEAVAPRLRTLSRRARGTEDVEQVIL 101
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN D L+ +F++ +P+ P L RFL+ AE+ G+ + +NK++L L
Sbjct: 102 ANPDQLVAVFAVAEPEPHPRMLDRFLIIAEARGLAAAVCVNKIDLDPSGELRRIFDPYRA 161
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + S + +G+D L L + + + GPSGVGKSSLINAL
Sbjct: 162 AGYPVIETSATTGVGIDELRAILHGKVSALSGPSGVGKSSLINAL--------------- 206
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
P L D RVGE+S +G+G+HTT +L+ L Y+ADTPG Q + +
Sbjct: 207 -HPEL------DLRVGEISAVTGKGRHTTTATTLILLDDETYIADTPGIRQLGFWGIDFE 259
Query: 255 SLAQTFPE 262
L FPE
Sbjct: 260 RLDHYFPE 267
>gi|160933499|ref|ZP_02080887.1| hypothetical protein CLOLEP_02345 [Clostridium leptum DSM 753]
gi|156867376|gb|EDO60748.1| ribosome small subunit-dependent GTPase A [Clostridium leptum DSM
753]
Length = 317
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 112/241 (46%), Gaps = 32/241 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + ++ ++ L GD+VV+ + D I+ + R +++ PPVAN+D L++ S
Sbjct: 49 CKARGIFRRHSQKPLAGDQVVI--VPAEDGTATIDEILPRKNQLVRPPVANIDQLIITAS 106
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG-YEPLFCSV 144
P P + + A I + + K +L D W ++ + S
Sbjct: 107 TCDPVPNPLIIDKMTALAVHKNIQPVVVITKSDLDD----GAWLKGIYDLAQIRCVLFSA 162
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
S G + + LR++ + G SGVGKSSL+N L G
Sbjct: 163 VSGEGAGEMKELLRNRISAFSGNSGVGKSSLLNRL-------------------YGGLQL 203
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK---VTKQSLAQTFP 261
E G++S K GRG+HTTR V L L GGGY+ADTPGF+ + + + K+ L Q FP
Sbjct: 204 E---TGDISQKLGRGRHTTRQVELFKLEGGGYVADTPGFSTVDVERYELIRKEELPQCFP 260
Query: 262 E 262
E
Sbjct: 261 E 261
>gi|332139960|ref|YP_004425698.1| GTPase RsgA [Alteromonas macleodii str. 'Deep ecotype']
gi|410860151|ref|YP_006975385.1| GTPase RsgA [Alteromonas macleodii AltDE1]
gi|327549982|gb|AEA96700.1| GTPase RsgA [Alteromonas macleodii str. 'Deep ecotype']
gi|410817413|gb|AFV84030.1| GTPase RsgA [Alteromonas macleodii AltDE1]
Length = 347
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 122/249 (48%), Gaps = 36/249 (14%)
Query: 27 VVRALLKKIKRRVLVGDKVVVGSIDWVDR--RGMIENVFQRSTEI--------LDPPVAN 76
V R +++ V+ GDKV D + RG+IE V R + + + P AN
Sbjct: 62 VSRCHIRRTVDSVVCGDKVFFSKGDDAESGVRGVIEIVKDRHSVLTRPDYYDGIKPIAAN 121
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
+D ++++ S+ P L + R+LV E GI + LNKVEL+ +E T +L T+
Sbjct: 122 IDRIIVVSSI-LPSLSLNIIDRYLVACEDIGITPLIVLNKVELLSDEERATVTEQLKTYE 180
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GYE LF S ++ G+++L + L D +V VG SGVGKSSLIN + P A
Sbjct: 181 KLGYEVLFTSCKTGEGINTLNEYLNDNISVFVGQSGVGKSSLINQVL--PDA-------- 230
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
D+ G++S SG G+HTT LL L GG L D+PG + L +
Sbjct: 231 ------------DELTGDISDNSGLGQHTTTAAKLLHLPAGGDLIDSPGVREFGLWHIPV 278
Query: 254 QSLAQTFPE 262
+ + F E
Sbjct: 279 ERITWGFIE 287
>gi|326803895|ref|YP_004321713.1| ribosome small subunit-dependent GTPase A [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651668|gb|AEA01851.1| ribosome small subunit-dependent GTPase A [Aerococcus urinae
ACS-120-V-Col10a]
Length = 310
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 115/239 (48%), Gaps = 28/239 (11%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R L +K + LVGD V + + G++ V +R E+ PPVAN+D ++ S+
Sbjct: 35 ARGLFRKEQLTPLVGDYVSFQADN--PHEGVLTAVKERKNELDRPPVANIDLAFVVASVT 92
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCSV 144
QP + + R LV +ES I L +K++L+DE E L + + GY+ L
Sbjct: 93 QPHIPSKLIDRMLVYSESQRIQPALYFSKLDLLDEAEREELRPLLANYQSLGYQVLTNLA 152
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
++ D L + +T +G SGVGK++L+N L H AA
Sbjct: 153 LAQANDDLLTELFHGKTIAAMGQSGVGKTTLLNHLLPDLHKETAA--------------- 197
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+S GRGKHTTRHV L + GG L DTPGF+ SL + K+ L FPE+
Sbjct: 198 -------ISKGMGRGKHTTRHVELHDVYGGK-LVDTPGFSSLSLDSIEKEDLGDYFPEM 248
>gi|270292089|ref|ZP_06198304.1| probable GTPase EngC [Streptococcus sp. M143]
gi|270279617|gb|EFA25459.1| probable GTPase EngC [Streptococcus sp. M143]
Length = 292
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDREELSFYQQTYRAIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 233
>gi|169349820|ref|ZP_02866758.1| hypothetical protein CLOSPI_00558 [Clostridium spiroforme DSM 1552]
gi|169293388|gb|EDS75521.1| ribosome small subunit-dependent GTPase A [Clostridium spiroforme
DSM 1552]
Length = 285
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 116/235 (49%), Gaps = 32/235 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K + + LVGD V ++ D G I + R+ ++ PP+ N+D L++ +
Sbjct: 25 CRARGKFRKDEIKPLVGDFV-----EYQD--GYIMKLLPRNNFLVRPPICNIDQALIVSA 77
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L +FL+ E I + L+K++L D+ + ++ + GY+ S +
Sbjct: 78 CKEPDFSSTLLDKFLLVVEHLNIEPIIVLSKMDL-DDGSIESYVNDYRKAGYKVYEISSK 136
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G+D + D+ TVI G SGVGKSSL+NAL D++ E
Sbjct: 137 DNYGIDEIKSIFEDKVTVITGQSGVGKSSLLNAL----------DINLNLE--------- 177
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+S GRGKHTTRHV L+ + GGY+ DTPGF+ L +T + LA +
Sbjct: 178 ---TNNISKALGRGKHTTRHVELIKMY-GGYIGDTPGFSSLE-LDMTPEQLAVAY 227
>gi|363899137|ref|ZP_09325648.1| ribosome small subunit-dependent GTPase A [Oribacterium sp. ACB1]
gi|395209340|ref|ZP_10398434.1| ribosome small subunit-dependent GTPase A [Oribacterium sp. ACB8]
gi|361959467|gb|EHL12754.1| ribosome small subunit-dependent GTPase A [Oribacterium sp. ACB1]
gi|394704971|gb|EJF12500.1| ribosome small subunit-dependent GTPase A [Oribacterium sp. ACB8]
Length = 298
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 120/249 (48%), Gaps = 28/249 (11%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRR--GMIENVFQRSTEILDPPVAN 76
K+GV C + L + K + LVGD V + + ++ G I N+ +R ++ P V+N
Sbjct: 18 KSGV-YECHAKGLFRNKKEKPLVGDMVELCPVPDSEKEHCGQILNILERKNSLIRPLVSN 76
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLH 133
+D +L+FS+ P + RFL+ E IP + NK +L++E+ +N K
Sbjct: 77 IDQAVLVFSLKSPDPSFPLIDRFLLHLEVREIPCLIFFNKKDLLEEKDAAFVNEIKCIYE 136
Query: 134 TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
F ++ +++ L+ +TTV GPSGVGKS++IN L
Sbjct: 137 KAEIPVYFFQGNTERDKEAIFSLLKGKTTVFSGPSGVGKSTIINLL-------------- 182
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
LG + E GE+S K RGK+TTRH ++ Y+ DTPGF +++
Sbjct: 183 -----LGEERME---TGELSEKISRGKNTTRHAEFFAIAEDSYVLDTPGFTSLFPPEISP 234
Query: 254 QSLAQTFPE 262
++L +PE
Sbjct: 235 ENLRYFYPE 243
>gi|406576763|ref|ZP_11052388.1| GTPase RsgA [Streptococcus sp. GMD6S]
gi|419817062|ref|ZP_14341232.1| GTPase RsgA [Streptococcus sp. GMD4S]
gi|404460728|gb|EKA06972.1| GTPase RsgA [Streptococcus sp. GMD6S]
gi|404466448|gb|EKA11784.1| GTPase RsgA [Streptococcus sp. GMD4S]
Length = 292
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERENSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDSEELSFYQQTYRAIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 233
>gi|260887292|ref|ZP_05898555.1| ribosome small subunit-dependent GTPase A [Selenomonas sputigena
ATCC 35185]
gi|260862928|gb|EEX77428.1| ribosome small subunit-dependent GTPase A [Selenomonas sputigena
ATCC 35185]
Length = 300
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 118/238 (49%), Gaps = 28/238 (11%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
+R LKK + V+ GD V + + G+IE +R + + P VAN+D ++L+F+
Sbjct: 33 LRGRLKKERIAVVPGDDVELELTEG--GAGVIERRCERKSLLRRPLVANIDQVVLVFAAR 90
Query: 88 QPKLEPFALTRFLVEAESTGIP-LTLALNKVELV--DEEVLNTWKSRLHTWGYEPLFCSV 144
+P + P + RFLV AE + I + L +NK++L+ DE + + GY S
Sbjct: 91 EPDINPVLIDRFLVLAEWSKIERIVLCINKMDLLEGDEAEIPALAALYREIGYPVCLLST 150
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ G+ + + ++T+V G SGVGKSSL+N L S
Sbjct: 151 VTGEGVADMQSLVEEKTSVFAGSSGVGKSSLLNCLAPGIALS------------------ 192
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K RG+HTTR LLP + GG+L DTPGF+ L ++ +L FPE
Sbjct: 193 ----TGAVSEKIKRGRHTTRTAQLLPFA-GGFLVDTPGFSATELAEIEPCALPGLFPE 245
>gi|237744725|ref|ZP_04575206.1| GTPase [Fusobacterium sp. 7_1]
gi|229431954|gb|EEO42166.1| GTPase [Fusobacterium sp. 7_1]
Length = 288
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 123/257 (47%), Gaps = 34/257 (13%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 20 CKLRGILKKTNNKYNCVVGDRV------KISEDNTIVEIFKRDNMLIRPIVANVDYLAIQ 73
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRLHTWGYEPL 140
F+ P ++ + L+ A + + +NK++ + EE L K S L
Sbjct: 74 FAAKHPNIDFERINLLLLTAFYYKVKPIVIVNKIDYLTEEELCELKEKLSFLEKISVPMF 133
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S E L
Sbjct: 134 LISCHQNIGLEKVENFLKDKITVIGGPSGVGKSSFINFLQS--------------EKTL- 178
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ GE+S K RGKHTTR +++ + GGY+ DTPGF+ + + +Q L
Sbjct: 179 -------KTGEISEKLQRGKHTTRDSNMIKMKVGGYIIDTPGFSSIEVPNIENRQELISL 231
Query: 260 FPEVCAVGLLYMIHMLH 276
FPE ++ ++ H
Sbjct: 232 FPEFSSIESCKFLNCSH 248
>gi|335357198|ref|ZP_08549068.1| GTPase [Lactobacillus animalis KCTC 3501]
Length = 295
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 126/254 (49%), Gaps = 40/254 (15%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRR------GMIENVFQRSTEILDPPV 74
GVE R +K K+ LVGD WV+ + G I ++ R +++ PP+
Sbjct: 21 GVEYRTRARGNFRKKKQTPLVGD--------WVEFKAQKADEGYILEIYPRKNQLVRPPM 72
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D L++ + QP L R L E+ + L +K +L+ EE L+
Sbjct: 73 ANLDTALVVTACVQPDFSSNLLDRQLAMLEANDVSPVLYFSKYDLLTEEQKAKLDPILNY 132
Query: 135 WG-YEPLF-CSVESK-LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
+ + P++ S+ ++ L+++L L Q V++G +G GKS+L+N L
Sbjct: 133 YAKFYPVYRGSLPARPETLETMLANLHHQVIVVMGQTGAGKSTLLNQL------------ 180
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251
EP L + GE+S RG+HTTR VSLLP+ G LADTPGF+ LL++
Sbjct: 181 ----EPSL------ELATGEISKALSRGRHTTRKVSLLPI-GDNLLADTPGFSSFELLEI 229
Query: 252 TKQSLAQTFPEVCA 265
TK+ L FP++ A
Sbjct: 230 TKEQLPTLFPDLVA 243
>gi|330838954|ref|YP_004413534.1| ribosome biogenesis GTPase RsgA [Selenomonas sputigena ATCC 35185]
gi|329746718|gb|AEC00075.1| ribosome biogenesis GTPase RsgA [Selenomonas sputigena ATCC 35185]
Length = 293
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 118/238 (49%), Gaps = 28/238 (11%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
+R LKK + V+ GD V + + G+IE +R + + P VAN+D ++L+F+
Sbjct: 26 LRGRLKKERIAVVPGDDVELELTE--GGAGVIERRCERKSLLRRPLVANIDQVVLVFAAR 83
Query: 88 QPKLEPFALTRFLVEAESTGIP-LTLALNKVELV--DEEVLNTWKSRLHTWGYEPLFCSV 144
+P + P + RFLV AE + I + L +NK++L+ DE + + GY S
Sbjct: 84 EPDINPVLIDRFLVLAEWSKIERIVLCINKMDLLEGDEAEIPALAALYREIGYPVCLLST 143
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ G+ + + ++T+V G SGVGKSSL+N L S
Sbjct: 144 VTGEGVADMQSLVEEKTSVFAGSSGVGKSSLLNCLAPGIALS------------------ 185
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K RG+HTTR LLP + GG+L DTPGF+ L ++ +L FPE
Sbjct: 186 ----TGAVSEKIKRGRHTTRTAQLLPFA-GGFLVDTPGFSATELAEIEPCALPGLFPE 238
>gi|431794635|ref|YP_007221540.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430784861|gb|AGA70144.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 297
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 33/259 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + + IE V R ++ P +ANVD L+F+
Sbjct: 25 CSLRGRFRIRNQEFLPGDRVKI--LPGTGIKATIEEVEPRRNSLVRPTIANVDQAFLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKS-------RLHTWGYE 138
P+ + L R +++ I + +NK++L + + K+ GY+
Sbjct: 83 YVSPEPDLNLLDRLIIQVTDAQIKPVIIMNKLDLASTQADPSGKTIAADGMDFYRELGYD 142
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S +++ GL L +++ + TV+ GPSGVGKSSL+NAL SP
Sbjct: 143 LIKVSTKTREGLVELQEQINGKVTVLAGPSGVGKSSLLNAL--SPDL------------- 187
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ + G+VS K RG+HTTRHV L+ + G G LADTPGF+ L ++ ++ L
Sbjct: 188 -------ELKTGDVSQKLKRGRHTTRHVELM-VCGEGLLADTPGFSSLYLPEMKREELTD 239
Query: 259 TFPEV-CAVGLLYMIHMLH 276
F E AVG + +H
Sbjct: 240 YFVEFRGAVGKCRFANCMH 258
>gi|300861544|ref|ZP_07107628.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TUSoD Ef11]
gi|428768229|ref|YP_007154340.1| ribosome biogenesis GTPase, putative [Enterococcus faecalis str.
Symbioflor 1]
gi|300849005|gb|EFK76758.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TUSoD Ef11]
gi|427186402|emb|CCO73626.1| ribosome biogenesis GTPase, putative [Enterococcus faecalis str.
Symbioflor 1]
Length = 297
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 111/232 (47%), Gaps = 32/232 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE A
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEFVAAA 244
>gi|418973406|ref|ZP_13521400.1| ribosome small subunit-dependent GTPase A [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383349295|gb|EID27240.1| ribosome small subunit-dependent GTPase A [Streptococcus
pseudopneumoniae ATCC BAA-960]
Length = 292
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ +K GY+ V SK + LL L D+ TV
Sbjct: 101 HKGIHPIVYISKMDLLEDGGELDFYKQTYGDIGYD----FVTSK---EELLPLLTDKITV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIATV 233
>gi|422740061|ref|ZP_16795218.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX2141]
gi|315144150|gb|EFT88166.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX2141]
Length = 297
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 111/232 (47%), Gaps = 32/232 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE A
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEFVAAA 244
>gi|29377575|ref|NP_816729.1| hypothetical protein EF3119 [Enterococcus faecalis V583]
gi|227554539|ref|ZP_03984586.1| GTP-binding protein [Enterococcus faecalis HH22]
gi|257088230|ref|ZP_05582591.1| ribosome-associated GTPase YjeQ [Enterococcus faecalis D6]
gi|257417963|ref|ZP_05594957.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|422713876|ref|ZP_16770624.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0309A]
gi|422718499|ref|ZP_16775152.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0309B]
gi|422723546|ref|ZP_16780081.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX2137]
gi|38257438|sp|Q82ZE1.1|RSGA_ENTFA RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|29345042|gb|AAO82799.1| conserved hypothetical protein TIGR00157 [Enterococcus faecalis
V583]
gi|227176337|gb|EEI57309.1| GTP-binding protein [Enterococcus faecalis HH22]
gi|256996260|gb|EEU83562.1| ribosome-associated GTPase YjeQ [Enterococcus faecalis D6]
gi|257159791|gb|EEU89751.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|315026434|gb|EFT38366.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX2137]
gi|315573267|gb|EFU85458.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0309B]
gi|315581159|gb|EFU93350.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0309A]
Length = 297
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 111/232 (47%), Gaps = 32/232 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQQVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE A
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEFVAAA 244
>gi|229548025|ref|ZP_04436750.1| GTP-binding protein [Enterococcus faecalis ATCC 29200]
gi|255970689|ref|ZP_05421275.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|257091361|ref|ZP_05585722.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|312905425|ref|ZP_07764539.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0635]
gi|312953214|ref|ZP_07772060.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0102]
gi|384514347|ref|YP_005709440.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
OG1RF]
gi|384516914|ref|YP_005704219.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
62]
gi|422689953|ref|ZP_16748043.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0630]
gi|422692424|ref|ZP_16750445.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0031]
gi|422725678|ref|ZP_16782136.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0312]
gi|422732810|ref|ZP_16789139.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0645]
gi|430360173|ref|ZP_19426150.1| ribosome-associated GTPase [Enterococcus faecalis OG1X]
gi|430366203|ref|ZP_19427384.1| ribosome-associated GTPase [Enterococcus faecalis M7]
gi|229306901|gb|EEN72897.1| GTP-binding protein [Enterococcus faecalis ATCC 29200]
gi|255961707|gb|EET94183.1| conserved hypothetical protein [Enterococcus faecalis T1]
gi|257000173|gb|EEU86693.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|310628831|gb|EFQ12114.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0102]
gi|310631154|gb|EFQ14437.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0635]
gi|315152783|gb|EFT96799.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0031]
gi|315159382|gb|EFU03399.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0312]
gi|315161205|gb|EFU05222.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0645]
gi|315577121|gb|EFU89312.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0630]
gi|323479047|gb|ADX78486.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
62]
gi|327536236|gb|AEA95070.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
OG1RF]
gi|429513085|gb|ELA02678.1| ribosome-associated GTPase [Enterococcus faecalis OG1X]
gi|429517217|gb|ELA06684.1| ribosome-associated GTPase [Enterococcus faecalis M7]
Length = 297
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 111/232 (47%), Gaps = 32/232 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE A
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEFVAAA 244
>gi|333029798|ref|ZP_08457859.1| ribosome biogenesis GTPase RsgA [Bacteroides coprosuis DSM 18011]
gi|332740395|gb|EGJ70877.1| ribosome biogenesis GTPase RsgA [Bacteroides coprosuis DSM 18011]
Length = 310
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 25/196 (12%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
ANVD +L +++ P+ + RFL E+ +P TL NK++L DE+ L +H
Sbjct: 85 AANVDQCMLFVTVNHPETSTVFIDRFLASTEAYRVPTTLLFNKIDLYDEDELRYIDGLIH 144
Query: 134 ---TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
T GY + SV ++ G++ L ++LR + T+ G SGVGK++LIN +
Sbjct: 145 LYTTIGYTCIKTSVVTREGIEDLKEKLRGKVTLFSGHSGVGKTTLINEML---------- 194
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
P L D RV E+ST G HTT + + + GY+ DTPG
Sbjct: 195 ------PDL------DLRVSEISTYHNTGMHTTTYSEMFEIPQSGYIIDTPGIKGFGTFD 242
Query: 251 VTKQSLAQTFPEVCAV 266
+ K+ +A FPE+ +
Sbjct: 243 MEKEEIAHFFPEIFKI 258
>gi|257417244|ref|ZP_05594238.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257420435|ref|ZP_05597425.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|422708014|ref|ZP_16765548.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0043]
gi|257159072|gb|EEU89032.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257162259|gb|EEU92219.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|315154704|gb|EFT98720.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0043]
Length = 297
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 111/232 (47%), Gaps = 32/232 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE A
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEFVAAA 244
>gi|406586584|ref|ZP_11061512.1| GTPase RsgA [Streptococcus sp. GMD1S]
gi|404473935|gb|EKA18258.1| GTPase RsgA [Streptococcus sp. GMD1S]
Length = 292
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ T GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYRTIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIASV 233
>gi|312793233|ref|YP_004026156.1| ribosome small subunit-dependent gtpase a [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180373|gb|ADQ40543.1| ribosome small subunit-dependent GTPase A [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 290
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 26/245 (10%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D G C R + +K LVGD VV+ I+ +I+ + R +++ PP+ANV
Sbjct: 19 DHDGNVYECRARGVFRKDDIVPLVGDNVVI--IEKSKGAYVIDKILPRKNQLIRPPIANV 76
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D +++ + P++ AL + LV + + +NK++L D + K + +
Sbjct: 77 DIAIVVVASVSPEVSLIALDKLLVNVLKEKVKPVICVNKIDLDDGKTFEMIKQQYSVF-- 134
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ + S ++ G+D L + ++ + +V G SGVGKSS++N L
Sbjct: 135 DVIGVSAKTGEGIDKLKEYIQGRISVFAGQSGVGKSSILNCL------------------ 176
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
I G+ +VGE+S K RG+HTTR V LL Y+ADTPGF+ ++ + + L
Sbjct: 177 IPGANL----KVGEISKKIERGRHTTRVVELLRAGEDTYIADTPGFSSIEIIGLLRHELK 232
Query: 258 QTFPE 262
+PE
Sbjct: 233 YYYPE 237
>gi|229547456|ref|ZP_04436181.1| GTP-binding protein [Enterococcus faecalis TX1322]
gi|255974269|ref|ZP_05424855.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256618126|ref|ZP_05474972.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256761056|ref|ZP_05501636.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256854790|ref|ZP_05560154.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256958396|ref|ZP_05562567.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256960465|ref|ZP_05564636.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256962958|ref|ZP_05567129.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|257078293|ref|ZP_05572654.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|257083207|ref|ZP_05577568.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|293385123|ref|ZP_06630949.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
R712]
gi|293389096|ref|ZP_06633568.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
S613]
gi|294779984|ref|ZP_06745364.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
PC1.1]
gi|307270566|ref|ZP_07551864.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX4248]
gi|307273618|ref|ZP_07554846.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0855]
gi|307276660|ref|ZP_07557778.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX2134]
gi|307284856|ref|ZP_07565012.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0860]
gi|307288884|ref|ZP_07568857.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0109]
gi|307292136|ref|ZP_07572002.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0411]
gi|312902131|ref|ZP_07761391.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0470]
gi|312906693|ref|ZP_07765693.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
DAPTO 512]
gi|312910845|ref|ZP_07769681.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
DAPTO 516]
gi|397701264|ref|YP_006539052.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
D32]
gi|421513181|ref|ZP_15959964.1| Ribosome small subunit-stimulated GTPase EngC [Enterococcus
faecalis ATCC 29212]
gi|422687004|ref|ZP_16745194.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX4000]
gi|422696073|ref|ZP_16754050.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX4244]
gi|422698509|ref|ZP_16756401.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1346]
gi|422700445|ref|ZP_16758292.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1342]
gi|422704090|ref|ZP_16761905.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1302]
gi|422720855|ref|ZP_16777462.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0017]
gi|422728587|ref|ZP_16784995.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0012]
gi|422736047|ref|ZP_16792312.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1341]
gi|424674080|ref|ZP_18111006.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
599]
gi|424759063|ref|ZP_18186736.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
R508]
gi|229307488|gb|EEN73475.1| GTP-binding protein [Enterococcus faecalis TX1322]
gi|255967141|gb|EET97763.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256597653|gb|EEU16829.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256682307|gb|EEU22002.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256710350|gb|EEU25394.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256948892|gb|EEU65524.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256950961|gb|EEU67593.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256953454|gb|EEU70086.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|256986323|gb|EEU73625.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|256991237|gb|EEU78539.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|291077600|gb|EFE14964.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
R712]
gi|291081564|gb|EFE18527.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
S613]
gi|294452965|gb|EFG21387.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
PC1.1]
gi|306496789|gb|EFM66340.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0411]
gi|306500156|gb|EFM69500.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0109]
gi|306503115|gb|EFM72372.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0860]
gi|306506770|gb|EFM75922.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX2134]
gi|306509631|gb|EFM78673.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0855]
gi|306513147|gb|EFM81781.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX4248]
gi|310627341|gb|EFQ10624.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
DAPTO 512]
gi|311288868|gb|EFQ67424.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
DAPTO 516]
gi|311290795|gb|EFQ69351.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0470]
gi|315028358|gb|EFT40290.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX4000]
gi|315031804|gb|EFT43736.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0017]
gi|315146587|gb|EFT90603.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX4244]
gi|315150896|gb|EFT94912.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0012]
gi|315164411|gb|EFU08428.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1302]
gi|315167219|gb|EFU11236.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1341]
gi|315171203|gb|EFU15220.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1342]
gi|315172958|gb|EFU16975.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1346]
gi|397337903|gb|AFO45575.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
D32]
gi|401673721|gb|EJS80096.1| Ribosome small subunit-stimulated GTPase EngC [Enterococcus
faecalis ATCC 29212]
gi|402352024|gb|EJU86889.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
599]
gi|402405239|gb|EJV37837.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
R508]
Length = 297
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 111/232 (47%), Gaps = 32/232 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE A
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEFVAAA 244
>gi|331004333|ref|ZP_08327808.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae oral
taxon 107 str. F0167]
gi|330411399|gb|EGG90814.1| ribosome small subunit-dependent GTPase A [Lachnospiraceae oral
taxon 107 str. F0167]
Length = 305
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 25/249 (10%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ++ G C + + + I + LVGD V D D G I + QR ++ P V
Sbjct: 28 DEGNRKGQIFSCKAKGIFRNIGVKPLVGDNVDFEITDEKDFEGNIIKIHQRKNSLIRPAV 87
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D ++L+ +++ P + L ++L+ + GI + + NK +L ++ L ++++T
Sbjct: 88 ANIDKVMLVLAVESPSPAFYYLDKYLINMSNAGIKVEICWNKTDLNMDKALEY--AKIYT 145
Query: 135 -WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
G++ + S GL +L + L+ + V+ G SGVGKSS+ N L +P A
Sbjct: 146 DAGFKNIIASTVEDGGLKTLKEALKGEVNVLAGASGVGKSSITNIL--APKA-------- 195
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
+ VS K RG+HTTRH L + ++ DTPGF K
Sbjct: 196 ------------NMDTNTVSRKIERGRHTTRHSELFMIDNDTFVFDTPGFTSVESPTFDK 243
Query: 254 QSLAQTFPE 262
+ L F E
Sbjct: 244 EELRFYFNE 252
>gi|307707667|ref|ZP_07644147.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis NCTC
12261]
gi|307616279|gb|EFN95472.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis NCTC
12261]
Length = 292
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK ++LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDREELDFYEQTYGNIGYD----FVTSK---EALLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIATV 233
>gi|317056482|ref|YP_004104949.1| ribosome small subunit-dependent GTPase A [Ruminococcus albus 7]
gi|315448751|gb|ADU22315.1| ribosome small subunit-dependent GTPase A [Ruminococcus albus 7]
Length = 293
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 114/241 (47%), Gaps = 33/241 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRG-MIENVFQRSTEILDPPVANVDHLLLLF 84
C R + +K K + GD VV+ D+ G +IE + R +E++ PP+AN+D L+ +
Sbjct: 24 CKARGIFRKKKISPMCGDNVVITE----DKDGCVIEEILPRRSELIRPPLANLDLLVFVS 79
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSV 144
S +P+ L +F+ AE I + KV D+ + + + G + C
Sbjct: 80 STIEPRPNTLLLDKFIAIAEFKKIKPVVVFTKV---DKRSGDELAAVYRSVGIDVFECDN 136
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ G + L+ + + G +GVGKSSL+N + P LG
Sbjct: 137 VTGEGSAEVRAALQGKLSAFTGNTGVGKSSLLNNMY----------------PELG---- 176
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK---VTKQSLAQTFP 261
GE+S K GRG+HTTRHV L L GGGY+ADTPGF+ + + K LA F
Sbjct: 177 --LATGEISKKLGRGRHTTRHVQLYKLEGGGYIADTPGFSSFDTNRYDIIFKDKLADCFI 234
Query: 262 E 262
E
Sbjct: 235 E 235
>gi|371778637|ref|ZP_09484959.1| GTPase RsgA [Anaerophaga sp. HS1]
Length = 308
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 111/238 (46%), Gaps = 36/238 (15%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP----------VANVDHLLLLFSMDQ 88
V VGD+V+ S+D + G+IE + +R I+ AN+D +L+ +++
Sbjct: 43 VAVGDRVIF-SVDEKNGIGIIEEILERKNYIVRRASNLSRQTQILAANIDQAILVATINY 101
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVE 145
P P + RFL E+ IP T+ NK++ D + K + + GY L S +
Sbjct: 102 PVTTPVFIDRFLATTEAYDIPTTIIFNKIDRYDHYHKDQLKETIQIYNNIGYNVLVTSAK 161
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+D + + L+++ +++ G SGVGKS+LIN + EP L K
Sbjct: 162 HDQNIDLVRELLKNKVSLLAGHSGVGKSTLINRV----------------EPTLNLK--- 202
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
++S G+HTT + PL GGY+ DTPG L + K+ LA F E+
Sbjct: 203 ---TAKISDAHNTGRHTTTFTEMHPLGIGGYIIDTPGIRGFGLFNIKKEELAHFFREI 257
>gi|306830178|ref|ZP_07463362.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis ATCC
6249]
gi|304427704|gb|EFM30800.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis ATCC
6249]
Length = 301
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 50 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 109
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL L + TV
Sbjct: 110 HKGIHPIVYISKMDLLEDSEELSFYQQTYRAIGYD----FVTSK---EELLPLLTGKVTV 162
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 163 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 200
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 201 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIATV 242
>gi|284040664|ref|YP_003390594.1| ribosome small subunit-dependent GTPase A [Spirosoma linguale DSM
74]
gi|283819957|gb|ADB41795.1| ribosome small subunit-dependent GTPase A [Spirosoma linguale DSM
74]
Length = 308
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 35/238 (14%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV----------ANVDHLLLLFSMDQ 88
+ VGD+VV D + +I ++ R I+ V AN+D +LL ++
Sbjct: 43 IAVGDRVVFDVEDEAENTAIITDISPRDNYIIRQSVHKTAHGHILAANIDQAVLLATLAM 102
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVE 145
P+ + RFLV AES IP T+ NK+++++EE L + + + GY L S
Sbjct: 103 PRTSAGFIDRFLVSAESFRIPTTIVFNKIDILNEEGLAFQQEIIDLYERIGYNCLSTSAT 162
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G+++ + L + T++ G SGVGKSSL+NA+ P L
Sbjct: 163 EGVGVEAFRELLDQKVTLVAGHSGVGKSSLVNAI----------------APGL------ 200
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ R EVS+ + +G HTT + LS ++ DTPG + L+ +K + FPE+
Sbjct: 201 NLRTNEVSSFANKGVHTTTFAEMFELSPNTFIIDTPGIKELGLMDTSKTEIGHYFPEM 258
>gi|312622706|ref|YP_004024319.1| ribosome small subunit-dependent GTPase a [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203173|gb|ADQ46500.1| ribosome small subunit-dependent GTPase A [Caldicellulosiruptor
kronotskyensis 2002]
Length = 290
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 26/245 (10%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D G C R + +K LVGD VV+ ++ +I+ + R +++ PP+ANV
Sbjct: 19 DHDGNIYECRARGVFRKDDITPLVGDNVVI--VEKSKGSYIIDKILPRKNQLIRPPIANV 76
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D +++ + P++ AL + LV + + +NK++L D + K + +
Sbjct: 77 DIAIVVVASVSPEVSLIALDKLLVNVLKEKVKPVICVNKIDLDDGKTFEMIKQQYSVF-- 134
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ + S ++ G+D L ++ + +V G SGVGKSS++N L
Sbjct: 135 DVIGVSAKTGEGIDKLKNYIQGRISVFAGQSGVGKSSILNCL------------------ 176
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
I G+ +VGE+S K RG+HTTR V LL Y+ADTPGF+ ++ + + L
Sbjct: 177 IPGANL----KVGEISKKIERGRHTTRVVELLRAGEDTYIADTPGFSSIEIMGLLRNDLK 232
Query: 258 QTFPE 262
+PE
Sbjct: 233 YYYPE 237
>gi|344995751|ref|YP_004798094.1| ribosome biogenesis GTPase RsgA [Caldicellulosiruptor lactoaceticus
6A]
gi|343963970|gb|AEM73117.1| ribosome biogenesis GTPase RsgA [Caldicellulosiruptor lactoaceticus
6A]
Length = 290
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 26/245 (10%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D G C R + +K LVGD VV+ I+ +I+ + R +++ PP+ANV
Sbjct: 19 DHDGNVYECRARGVFRKDDIVPLVGDNVVI--IEKSKGAYVIDKILPRKNQLIRPPIANV 76
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D +++ + P++ AL + LV + + +NK++L D + K + +
Sbjct: 77 DIAIVVVASVSPEVSLIALDKLLVNVLKEKVKPVICVNKIDLDDGKTFEMIKQQYSVF-- 134
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ + S ++ G+D L + ++ +V G SGVGKSS++N L
Sbjct: 135 DVIGVSAKNGEGIDKLKEYIQGIISVFAGQSGVGKSSILNCL------------------ 176
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
I G+ +VGE+S K RGKHTTR V LL Y+ADTPGF+ ++ + + L
Sbjct: 177 IPGANL----KVGEISKKIERGKHTTRVVELLRAGEDTYIADTPGFSSIEIIGLLRHELK 232
Query: 258 QTFPE 262
+PE
Sbjct: 233 YYYPE 237
>gi|257080482|ref|ZP_05574843.1| ribosome-associated GTPase [Enterococcus faecalis E1Sol]
gi|256988512|gb|EEU75814.1| ribosome-associated GTPase [Enterococcus faecalis E1Sol]
Length = 297
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 111/232 (47%), Gaps = 32/232 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K GY + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPDLQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE A
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEFVAAA 244
>gi|167753956|ref|ZP_02426083.1| hypothetical protein ALIPUT_02241 [Alistipes putredinis DSM 17216]
gi|167658581|gb|EDS02711.1| ribosome small subunit-dependent GTPase A [Alistipes putredinis DSM
17216]
Length = 309
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 122/265 (46%), Gaps = 40/265 (15%)
Query: 15 DCNDKTGVELLCVVRALLK----KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEIL 70
D G + C +R L+ + V+VGD+VV + + G+I V R I+
Sbjct: 18 DVRTNAGETVKCRIRGRLRLKGVRSTNPVVVGDRVVCERDE--EDAGVICEVVPRRNYII 75
Query: 71 DPP----------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
AN+D LL+ ++ P P + RFLV E+ +P+T+ L K +L
Sbjct: 76 RRASNLSKESHIIAANLDRALLVVTLFSPVTAPEFIDRFLVTCEAYRVPVTILLAKADLA 135
Query: 121 --DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
D E + +K+ + GY L S G++++ + L+ TT++ G SGVGKS+L
Sbjct: 136 AQDPEAVAAFKATYESAGYSVLEVSALDGTGIEAVRELLKGHTTLLAGNSGVGKSTLAGT 195
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
+ EP L D R G++S +G+HTT ++ PLS GGYL
Sbjct: 196 V----------------EPGL------DIRTGDISESHHKGRHTTTFSTMYPLSSGGYLI 233
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPEV 263
DTPG L+ + L FPE+
Sbjct: 234 DTPGIKGFGLIDIADAELWHYFPEM 258
>gi|116333599|ref|YP_795126.1| GTPase [Lactobacillus brevis ATCC 367]
gi|116098946|gb|ABJ64095.1| Predicted GTPase [Lactobacillus brevis ATCC 367]
Length = 298
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 31/245 (12%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K K LVGD+V S + G I + R + PPVAN+D +++ ++
Sbjct: 27 ARGNFRKRKITPLVGDRVKFDSSS--PKEGYILEILPRDNALTRPPVANIDQGVVVTAVA 84
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSV 144
P+ L R L+ E + I + K +L+D++ T+++ + GY P+ +
Sbjct: 85 APEFSTNLLDRQLIALEVSHIAPVIYFTKTDLIDDDRYQTFETLAVGYRKIGY-PVCLTR 143
Query: 145 E--SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
E + GLD L L + TVI+G +G GKS+L+N L SP + A
Sbjct: 144 EPFASTGLDQLRDTLAGKETVIMGQTGAGKSTLLNHL--SPELTLA-------------- 187
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+ST RG+HTTR VSL+P++ G +ADTPGF+ L + + L Q FPE
Sbjct: 188 ------TGEISTALNRGRHTTRKVSLMPVA-NGLVADTPGFSSYDTLTIDYRELGQYFPE 240
Query: 263 VCAVG 267
V
Sbjct: 241 FLNVA 245
>gi|222529038|ref|YP_002572920.1| ribosome small subunit-dependent GTPase A [Caldicellulosiruptor
bescii DSM 6725]
gi|222455885|gb|ACM60147.1| ribosome small subunit-dependent GTPase A [Caldicellulosiruptor
bescii DSM 6725]
Length = 290
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 26/245 (10%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D G C R + +K LVGD VV+ ++ +I+ + R +++ PP+ANV
Sbjct: 19 DHDGNIYECRARGVFRKDDITPLVGDNVVI--VEKSKGSYIIDKILPRKNQLIRPPIANV 76
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D +++ + P++ AL + LV + + +NK++L D + K + +
Sbjct: 77 DIAIVVVASVSPEVSLIALDKLLVNVLKEKVKPVICVNKIDLDDGKTFEMIKQQYSVF-- 134
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ + S ++ G+D L ++ + +V G SGVGKSS++N L
Sbjct: 135 DVIGVSAKTGEGIDKLKNYIQGRISVFAGQSGVGKSSILNCL------------------ 176
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
I G+ +VGE+S K RG+HTTR V LL Y+ADTPGF+ ++ + + L
Sbjct: 177 IPGANL----KVGEISKKIERGRHTTRVVELLRAGEDTYIADTPGFSSIEIIGLLRHELK 232
Query: 258 QTFPE 262
+PE
Sbjct: 233 YYYPE 237
>gi|392426896|ref|YP_006467890.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
acidiphilus SJ4]
gi|391356859|gb|AFM42558.1| ribosome small subunit-dependent GTPase A [Desulfosporosinus
acidiphilus SJ4]
Length = 297
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 117/244 (47%), Gaps = 32/244 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + + + IE R + P +ANVD LL+F+
Sbjct: 25 CSLRGRFRIKDQDFLPGDRVRI--LPEGNNKARIEGAEPRLNSLTRPSIANVDQALLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-------DEEVLNTWKSRLHTWGYE 138
+ PK + L R L++ + I + K++ D ++ GY
Sbjct: 83 LTSPKPDLNLLDRLLIQVTCSEIEPLIIFTKLDKYLTEAPPDDSLAKSSIPDIYRRIGYT 142
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
S ++ +G+ L + L ++ +V+ GPSG GKSSL NAL SD +
Sbjct: 143 VFEVSNKTGIGITELRKCLEEKISVLAGPSGAGKSSLFNAL------SDGKQL------- 189
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ GE+S KS RG+HTTRHV L+ + GG +ADTPGF+ L K+ ++ LA
Sbjct: 190 ---------KTGEISQKSQRGRHTTRHVELM-VCAGGLVADTPGFSSLFLPKMKREDLAT 239
Query: 259 TFPE 262
FPE
Sbjct: 240 YFPE 243
>gi|226228257|ref|YP_002762363.1| putative ribosome biogenesis GTPase RsgA [Gemmatimonas aurantiaca
T-27]
gi|259495474|sp|C1ABL6.1|RSGA_GEMAT RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|226091448|dbj|BAH39893.1| putative ribosome biogenesis GTPase RsgA [Gemmatimonas aurantiaca
T-27]
Length = 307
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 95/189 (50%), Gaps = 22/189 (11%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
VAN+D +L++F+ +P P L RFLV AE+ G+ + +NK +LV EV +
Sbjct: 90 VANLDQVLVVFAAARPDPHPRMLDRFLVIAEANGLSARIVINKADLVSPEVSAALFADQM 149
Query: 134 TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY S+ + GL++L + +++ + GPSGVGKSSL+NAL
Sbjct: 150 AAGYPVHHTSIHTGEGLEALRDEVEHRSSALSGPSGVGKSSLMNAL-------------- 195
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
F + D R VS +G+HTT L PL GG++ADTPG + L +
Sbjct: 196 -FPGL-------DLRTAAVSDAVNKGRHTTVGAMLHPLPHGGFIADTPGLREVGLWGIEA 247
Query: 254 QSLAQTFPE 262
+A FPE
Sbjct: 248 GQVASCFPE 256
>gi|421611740|ref|ZP_16052872.1| ribosome small subunit-dependent GTPase A [Rhodopirellula baltica
SH28]
gi|408497453|gb|EKK01980.1| ribosome small subunit-dependent GTPase A [Rhodopirellula baltica
SH28]
Length = 386
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 127/264 (48%), Gaps = 45/264 (17%)
Query: 20 TGVELLCVVRALLKKI---KRRVLV-GDKV---------------VVGSIDWVD-RRGMI 59
GV C VR +LK + +R V+V GD+V G I+ V+ R GMI
Sbjct: 100 NGVLYACAVRQVLKSLSTSQRNVIVAGDRVWFRSESRDGVSLKSEADGMIERVEPRTGMI 159
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
+ +L V+N+D +L++ S +QP ++P + R ++ A I + +NKV+L
Sbjct: 160 SRTSRGRQHVL---VSNIDAMLIIASAEQPGIKPALIDRMILTAHQCQIEPIVIINKVDL 216
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+D L + GY L S E+ + L L+D+ T + G SGVGKSSL+NA+
Sbjct: 217 IDLVDLQPLIGVYSSLGYRVLPTSAETGQNVAYLRALLKDRQTALAGQSGVGKSSLLNAV 276
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
+P LG +G VS+ + +GKHTT L+PL+ GG + D
Sbjct: 277 ----------------QPGLGLA------IGAVSSDNDKGKHTTTASQLIPLADGGAVFD 314
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEV 263
TPG Q L ++ +A P++
Sbjct: 315 TPGIRQFQLWDISASEVAGLMPDL 338
>gi|404481899|ref|ZP_11017128.1| ribosome small subunit-dependent GTPase A [Clostridiales bacterium
OBRC5-5]
gi|404344869|gb|EJZ71224.1| ribosome small subunit-dependent GTPase A [Clostridiales bacterium
OBRC5-5]
Length = 300
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 119/249 (47%), Gaps = 25/249 (10%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D ++ G C + + +K+ + LVGD V D D G I + +R ++ P V
Sbjct: 23 DEGERKGQIFECKAKGIFRKLGVKPLVGDNVDFEITDTKDFEGNIVKIHKRKNALIRPAV 82
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D ++L+ +++ P + L ++L+ + GI + + NK +L ++ L ++++T
Sbjct: 83 ANIDKVVLVLAVESPSPAFYYLDKYLINMSNAGIKVEICWNKTDLNMDKALKY--AKIYT 140
Query: 135 -WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
G++ + S + GL+ L + L+ + +V+ G SGVGKSS+ N L +P A
Sbjct: 141 DAGFKNIIASTFEENGLEDLKEALKGEVSVLAGASGVGKSSITNIL--APKA-------- 190
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
+ VS K RG+HTTRH L + ++ DTPGF K
Sbjct: 191 ------------NMDTNTVSRKIERGRHTTRHSELFMIDSDTFVFDTPGFTSVESPAFDK 238
Query: 254 QSLAQTFPE 262
+ L F E
Sbjct: 239 EELRFHFHE 247
>gi|419778035|ref|ZP_14303937.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK10]
gi|383187788|gb|EIC80232.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK10]
Length = 292
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSIKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+D+ L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPVVYISKMDLLDDRGELDFFQQTYRAIGYD----FVTSK---EELLPLLTAKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPEV +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEVASV 233
>gi|188585967|ref|YP_001917512.1| ribosome small subunit-dependent GTPase A [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350654|gb|ACB84924.1| ribosome small subunit-dependent GTPase A [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 288
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 117/238 (49%), Gaps = 27/238 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C ++ L K LVGD V+V + +GMI ++ R ++ P VANVD ++++ S
Sbjct: 26 CKLKGNLIKDNNFPLVGDVVLVELTG--EGQGMISDLSSRENRLVKPAVANVDQVIVVTS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ PK + R LV A G+ + +NK EL D + T SV+
Sbjct: 84 VKNPKPNLQLVDRLLVWAYFEGLQGMVCINKREL-DYQKAQELAEIYKTSEINTTLISVK 142
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
LD L + ++T+V+ G SGVGKSS++N L P L
Sbjct: 143 EN-DLDHLPKFFENKTSVLAGQSGVGKSSILNTLN----------------PDL------ 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ V VS K+G GKHTTRH LL +GGG+L DTPGFN+ L ++ + L FPE+
Sbjct: 180 NLEVNPVSRKAGTGKHTTRHCQLLK-AGGGFLVDTPGFNKKKLPEIVPEQLELAFPEI 236
>gi|315611879|ref|ZP_07886798.1| ribosome small subunit-dependent GTPase A [Streptococcus sanguinis
ATCC 49296]
gi|315316057|gb|EFU64090.1| ribosome small subunit-dependent GTPase A [Streptococcus sanguinis
ATCC 49296]
Length = 301
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 50 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 109
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ T GY+ V SK + LL L + TV
Sbjct: 110 HKGIHPIVYISKMDLLSDRGELDFYEQTYRTIGYD----FVTSK---EELLPLLTGKVTV 162
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 163 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 200
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 201 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 242
>gi|422872358|ref|ZP_16918851.1| GTP-binding protein [Streptococcus sanguinis SK1087]
gi|328944608|gb|EGG38769.1| GTP-binding protein [Streptococcus sanguinis SK1087]
Length = 292
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 115/240 (47%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVIIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEQSLDAYVQAYQSIGYEVIKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIAEV 233
>gi|206895622|ref|YP_002246731.1| ribosome small subunit-dependent GTPase A [Coprothermobacter
proteolyticus DSM 5265]
gi|206738239|gb|ACI17317.1| ribosome small subunit-dependent GTPase A [Coprothermobacter
proteolyticus DSM 5265]
Length = 289
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 114/233 (48%), Gaps = 30/233 (12%)
Query: 35 IKRRVLVGDKVVVGSIDW----VDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPK 90
+K++V DKV+V W D +E R L PPVAN+D L+ + S P+
Sbjct: 30 VKKKVWEQDKVLVNDRVWFEPITDTEVSVERTTGRKNYFLRPPVANLDLLVYVHSFKNPQ 89
Query: 91 LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGL 150
+ L L A IP+ + +K +L+ +E + W S + GY+ + SV L
Sbjct: 90 CDVRYLDLTLGLATLQNIPVLVLFHKADLLRDEDIQPWTSLYTSLGYDVMVTSVYYDLS- 148
Query: 151 DSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210
+L +RLR +T + GP+GVGKSSL+ AL DA+ RVG
Sbjct: 149 -ALKERLRGKTVLFSGPTGVGKSSLVKAL-----WKDAS-----------------VRVG 185
Query: 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
++S K GRGKHTT V LLPL Y+ D PGF+ + + + + FPE+
Sbjct: 186 DIS-KVGRGKHTTSWVELLPLD-DTYVVDAPGFSLLEMPAMNPWDIQRMFPEI 236
>gi|257871111|ref|ZP_05650764.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|257805275|gb|EEV34097.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
Length = 294
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 114/230 (49%), Gaps = 29/230 (12%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ S+ QP L RF
Sbjct: 38 LVGDEVIFESSNPTD--GYLLEILPRKNELIRPPVANVDQGVVVTSLIQPNFSFNLLDRF 95
Query: 100 LVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
LV E I + L+K +LV D+ + + GY+ + ++ L+ LQR+
Sbjct: 96 LVTLEYKEIEPIIFLSKTDLVSDQSEVQKIAALYQQIGYQVIVSKADNSDLLE--LQRIF 153
Query: 159 -DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ TV +G SG GKS+L+N R P D E+S G
Sbjct: 154 PERLTVFMGQSGAGKSTLLN--RIVPEL--------------------DLETAEISESLG 191
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
RGKHTTRHV LL L G +ADTPGF+ L++ L + FPE A+
Sbjct: 192 RGKHTTRHVELLTLY-DGLVADTPGFSSIDFLEIDSGQLPKQFPEFLALA 240
>gi|440715494|ref|ZP_20896039.1| ribosome small subunit-dependent GTPase A [Rhodopirellula baltica
SWK14]
gi|436439519|gb|ELP32946.1| ribosome small subunit-dependent GTPase A [Rhodopirellula baltica
SWK14]
Length = 386
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 127/264 (48%), Gaps = 45/264 (17%)
Query: 20 TGVELLCVVRALLKKI---KRRVLV-GDKV---------------VVGSIDWVD-RRGMI 59
GV C VR +LK + +R V+V GD+V G I+ V+ R GMI
Sbjct: 100 NGVLYACAVRQVLKSLSTSQRNVIVAGDRVWFRSESRDGVSLKSEADGMIERVEPRTGMI 159
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
+ +L V+N+D +L++ S +QP ++P + R ++ A I + +NKV+L
Sbjct: 160 SRTSRGRQHVL---VSNIDAMLIIASAEQPGIKPALIDRMILTAHQCQIEPIVIINKVDL 216
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+D L + GY L S E+ + L L+D+ T + G SGVGKSSL+NA+
Sbjct: 217 IDLVDLQPLIGVYSSLGYRVLPTSAETGQNVAYLRALLKDRQTALAGQSGVGKSSLLNAV 276
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
+P LG +G VS+ + +GKHTT L+PL+ GG + D
Sbjct: 277 ----------------QPGLGLA------IGAVSSDNDKGKHTTTASQLIPLADGGAVFD 314
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEV 263
TPG Q L ++ +A P++
Sbjct: 315 TPGIRQFQLWDISASEVAGLMPDL 338
>gi|422885089|ref|ZP_16931537.1| GTP-binding protein [Streptococcus sanguinis SK49]
gi|332358476|gb|EGJ36301.1| GTP-binding protein [Streptococcus sanguinis SK49]
Length = 292
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 114/240 (47%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + L+K++L+ DE+ L+ + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKQIHPIIYLSKLDLLEDEQSLDIYVQAYQAIGYEVIKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIAEV 233
>gi|124008090|ref|ZP_01692789.1| ribosome small subunit-dependent GTPase A [Microscilla marina ATCC
23134]
gi|123986504|gb|EAY26310.1| ribosome small subunit-dependent GTPase A [Microscilla marina ATCC
23134]
Length = 308
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 121/269 (44%), Gaps = 39/269 (14%)
Query: 15 DCNDKTGVELLCVVRALLK----KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEIL 70
D ++G + C +R K K+ + VGD VV D + G+I + R I+
Sbjct: 15 DVRSESGEIIKCRLRGKFKIKGLKVSNPLAVGDWVVYEMEDAGEGTGVITKIETRENYII 74
Query: 71 DPPV----------ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
V AN+D +L+ ++ PK + RFLV AES IP + NKV+L+
Sbjct: 75 RQSVHKTGHGHIIAANLDQAILIATLAYPKTSLGFIDRFLVSAESFRIPTKIIFNKVDLL 134
Query: 121 DEEVLNTW---KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
DE +L + K+ GYE S G++ L +Q +++ G SGVGKS+L+N
Sbjct: 135 DEAMLEEYAYLKAVYEPLGYECFLTSATEGQGMEEFKSLLHNQKSLLSGHSGVGKSTLVN 194
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
A+ P L D R E+S S +G HTT + + ++
Sbjct: 195 AI----------------APEL------DIRTSEISDFSHKGVHTTTFAEMHEIFPDSFI 232
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
DTPG + LL + Q L FPE+ A+
Sbjct: 233 IDTPGIRELGLLNIKPQELGHYFPEMRAL 261
>gi|407682308|ref|YP_006797482.1| GTPase RsgA [Alteromonas macleodii str. 'English Channel 673']
gi|407243919|gb|AFT73105.1| GTPase RsgA [Alteromonas macleodii str. 'English Channel 673']
Length = 347
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 124/264 (46%), Gaps = 40/264 (15%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDR--RGMIENVFQRSTEI 69
+ +D D G V R +++ V+ GDKV D + G+IE V R + +
Sbjct: 51 KHADVEDANGA----VSRCHIRRTVDSVVCGDKVFFSKGDDAESGVSGVIEIVKDRHSVL 106
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ ++ P L + R+LV E GI + LNKVEL+
Sbjct: 107 TRPDYYDGIKPIAANIDRIIVVSAI-LPTLSLNIIDRYLVACEDIGITPLIVLNKVELLS 165
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
EE T +L T+ GYE LF S ++ G+ L + L D +V VG SGVGKSSLIN
Sbjct: 166 EEERTTVTEQLKTYENLGYEVLFTSCKTGEGISKLNEYLNDNISVFVGQSGVGKSSLINQ 225
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
+ P A D+ G++S SG G+HTT LL L GG L
Sbjct: 226 VL--PDA--------------------DELTGDISDNSGLGQHTTTAAKLLHLPAGGDLI 263
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPE 262
D+PG + L + + + F E
Sbjct: 264 DSPGVREFGLWHIPTERITWGFIE 287
>gi|315038630|ref|YP_004032198.1| Ribosome biogenesis GTPase rsgA [Lactobacillus amylovorus GRL 1112]
gi|385817897|ref|YP_005854287.1| Ribosome biogenesis GTPase rsgA [Lactobacillus amylovorus GRL1118]
gi|312276763|gb|ADQ59403.1| Ribosome biogenesis GTPase rsgA [Lactobacillus amylovorus GRL 1112]
gi|327183835|gb|AEA32282.1| Ribosome biogenesis GTPase rsgA [Lactobacillus amylovorus GRL1118]
Length = 296
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 116/241 (48%), Gaps = 36/241 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + ++ K++ VGD+V + +D +GM + + R I P VANV H+LL+ S
Sbjct: 29 ARGVFRQKKQKPAVGDRVEI----QIDDKGMSYLVKIMPRLNRIGRPAVANVSHVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFL+ + T+ L+K +L+D++ L+ K L + GY P+F
Sbjct: 85 AVEPDFSLELLDRFLIFFSWQKVKATIYLSKADLIDDDKLSEIKKSLAYYQEIGY-PVFT 143
Query: 143 SVES-KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
++ + L+ +DQ + G SG GKS+L+N L+ H
Sbjct: 144 DYHDVQIKIPELIG--KDQIWTLAGQSGAGKSTLLNHLKEDAH----------------- 184
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
Q GE+ST RGKHTTR V L L G G+LADTPGF+ L + L F
Sbjct: 185 -----QATGEISTSLNRGKHTTRKVELFKL-GEGFLADTPGFSSIDLTPIKLNELCNYFV 238
Query: 262 E 262
E
Sbjct: 239 E 239
>gi|38257395|sp|Q7UUZ6.2|RSGA_RHOBA RecName: Full=Putative ribosome biogenesis GTPase RsgA
Length = 313
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 127/264 (48%), Gaps = 45/264 (17%)
Query: 20 TGVELLCVVRALLKKI---KRRVLV-GDKV---------------VVGSIDWVD-RRGMI 59
GV C VR +LK + +R V+V GD+V G I+ V+ R GMI
Sbjct: 27 NGVLYACAVRQVLKSLSTSQRNVIVAGDRVWFRSESRDGVSLKSEADGMIERVEPRTGMI 86
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
+ +L V+N+D +L++ S +QP ++P + R ++ A I + +NKV+L
Sbjct: 87 SRTSRGRQHVL---VSNIDAMLIIASAEQPGIKPALIDRMILTAHQCQIEPIVIINKVDL 143
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+D L + GY L S E+ + L L+D+ T + G SGVGKSSL+NA+
Sbjct: 144 IDLVDLQPLIGVYSSLGYRVLPTSAETGQNVAYLRALLKDRQTALAGQSGVGKSSLLNAV 203
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
+P LG +G VS+ + +GKHTT L+PL+ GG + D
Sbjct: 204 ----------------QPGLGLA------IGAVSSDNDKGKHTTTASQLIPLADGGAVFD 241
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEV 263
TPG Q L ++ +A P++
Sbjct: 242 TPGIRQFQLWDISAGEVAGLMPDL 265
>gi|357048784|ref|ZP_09110018.1| ribosome biogenesis GTPase RsgA [Enterococcus saccharolyticus 30_1]
gi|355384737|gb|EHG31795.1| ribosome biogenesis GTPase RsgA [Enterococcus saccharolyticus 30_1]
Length = 294
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 114/230 (49%), Gaps = 29/230 (12%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ S+ QP L RF
Sbjct: 38 LVGDEVIFESSNPTD--GYLLEILPRKNELIRPPVANVDQGVVVTSLVQPNFSFNLLDRF 95
Query: 100 LVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
LV E I + L+K +LV D+ + + GY+ + ++ L+ LQR+
Sbjct: 96 LVTLEYKEIEPIIFLSKTDLVSDQSEVQKIAALYQQIGYQVIVSKADNSDLLE--LQRIF 153
Query: 159 -DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ TV +G SG GKS+L+N R P D E+S G
Sbjct: 154 PERLTVFMGQSGAGKSTLLN--RIVPEL--------------------DLETAEISESLG 191
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
RGKHTTRHV LL L G +ADTPGF+ L++ L + FPE A+
Sbjct: 192 RGKHTTRHVELLTLY-DGLVADTPGFSSIDFLEIDSGQLPKQFPEFLALA 240
>gi|291543916|emb|CBL17025.1| ribosome small subunit-dependent GTPase A [Ruminococcus
champanellensis 18P13]
Length = 302
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 116/242 (47%), Gaps = 43/242 (17%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R + + + +VGD+V V + G+I+ + R ++ PP+AN+D LL + SM
Sbjct: 39 ARGIFRNRGQSPMVGDRVQV-------KNGVIDQLLPRKNNLIRPPLANLDQLLFVVSMY 91
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147
+P L +F+ AE I L + K +L D L ++ P++ VE
Sbjct: 92 KPAPNLLLLDKFIAIAEYKQITPILVVTKADLEDPAPL----VEIYQKAGIPVYV-VEYA 146
Query: 148 L--GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D++ LR + + G SG GKS+L+NA+ +S
Sbjct: 147 IPRTVDAVAACLRGKVSAFTGNSGAGKSTLLNAIDASLQLE------------------- 187
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF-----NQPSLLKVTKQSLAQTF 260
G +S K GRG+HTTRH L P+ GGGY+ADTPGF NQ +++ K+ LA F
Sbjct: 188 ---TGSISEKLGRGRHTTRHAQLYPVQGGGYVADTPGFSTFETNQYDIIR--KEELAGCF 242
Query: 261 PE 262
E
Sbjct: 243 RE 244
>gi|385261510|ref|ZP_10039632.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. SK643]
gi|385193038|gb|EIF40426.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. SK643]
Length = 292
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 112/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P+ L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPEFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L D+ TV
Sbjct: 101 HKGIHPIIYISKMDLLEDRGELDYYQQTYSAIGYD----FVTSK---EDLLPLLTDKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FP++ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVATAEDLNQAFPDLAFV 233
>gi|325680313|ref|ZP_08159873.1| ribosome small subunit-dependent GTPase A [Ruminococcus albus 8]
gi|324108022|gb|EGC02278.1| ribosome small subunit-dependent GTPase A [Ruminococcus albus 8]
Length = 293
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 113/240 (47%), Gaps = 31/240 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K + GD+V + +IE + RS+E++ PP+AN+D L+ + S
Sbjct: 24 CNARGVFRKKKISPMCGDRV---NFKAAGEGFVIEEILPRSSELIRPPLANLDLLVFVSS 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P+ L +F+ AE GI + KV D++ + G + C
Sbjct: 81 TVEPRPNTLLLDKFIAIAEFKGIRPVVVFTKV---DKQSGAELAEIYRSAGIDVFECDNV 137
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G + L+ + + G +GVGKSSL+N N F +
Sbjct: 138 TGEGSAEVKAMLQGKLSAFTGNTGVGKSSLLN---------------NMFPEL------- 175
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK---VTKQSLAQTFPE 262
+ GE+S K GRG+HTTRHV L L GGGY+ADTPGF+ + + K+ LA F E
Sbjct: 176 ELATGEISKKLGRGRHTTRHVQLYKLEGGGYIADTPGFSSFDTNRYDIIFKEKLAGCFVE 235
>gi|417848999|ref|ZP_12494928.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK1080]
gi|339457292|gb|EGP69867.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK1080]
Length = 292
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 112/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I +++R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIYERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIIYISKMDLLEDGGELDFYQQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVTTSEDLNQAFPEIASV 233
>gi|81428308|ref|YP_395308.1| GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
gi|123564451|sp|Q38XT2.1|RSGA_LACSS RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|78609950|emb|CAI54997.1| Putative GTP-binding protein [Lactobacillus sakei subsp. sakei 23K]
Length = 299
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 115/245 (46%), Gaps = 30/245 (12%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K K LVGD V S + G I + R E++ PPVAN+D +++ S
Sbjct: 27 ARGNFRKRKITPLVGDFVEFESESQTES-GYILEILDRKNEMIRPPVANIDQAVVIVSAV 85
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC-- 142
+P L RFL+ ES I + L K +++ +E K L + GY P F
Sbjct: 86 EPDFSLNLLDRFLIYLESLNIQGLVYLTKTDMISDEKYQEIKQYLDYYEKVGY-PTFAPR 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + + ++ D+TTV G +G GKS+L+N + + + A
Sbjct: 145 TAFTPEIIQAIEDTFPDKTTVFTGQTGAGKSTLLNHIDPKLNLATA-------------- 190
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S RGKHTTRH+ L+PL+ G + DTPGF+ +L VT ++L +PE
Sbjct: 191 --------EISQSLNRGKHTTRHIELIPLN-DGLVGDTPGFSSLGILNVTSETLVSRYPE 241
Query: 263 VCAVG 267
+G
Sbjct: 242 FREIG 246
>gi|407716820|ref|YP_006838100.1| ribosome small subunit-dependent GTPase A [Cycloclasticus sp. P1]
gi|407257156|gb|AFT67597.1| Ribosome small subunit-dependent GTPase A [Cycloclasticus sp. P1]
Length = 309
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 136/276 (49%), Gaps = 56/276 (20%)
Query: 2 RVIVQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWV---DRRGM 58
+ ++ + E RT+ C +T ++ + VGD V +W+ D G
Sbjct: 28 KALIVEDEQGRTARCKKRTQLQ--------------QPAVGDYV-----EWIKTEDDAGR 68
Query: 59 IENVFQRSTEILDP-------PVA-NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPL 110
+ENV +R + + P PVA N+D ++++ ++ +P ++P L ++L+ E I
Sbjct: 69 VENVLERRSLLSRPAKNGQTRPVAANLDQIVIIIAV-KPTIDPLLLDQYLIVCEFQEIKP 127
Query: 111 TLALNKVELVDEEVLNTWKSRL---HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGP 167
+ LNKV+L+DE + + YE + S K GLD L +RL+++T+++VG
Sbjct: 128 LIVLNKVDLLDEGSRKSTDELILLYRNLSYEVIEVSAVEKSGLDKLRKRLKNETSILVGQ 187
Query: 168 SGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227
SGVGKS++ N+L P L D + +ST SG GKHTT +
Sbjct: 188 SGVGKSTITNSLL----------------PDL------DLQTKALSTASGLGKHTTTSST 225
Query: 228 LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
L L GG + D+PG N L +T+Q+LA + E+
Sbjct: 226 LYKLPEGGDIIDSPGVNIFGLAHITEQNLAYGYREI 261
>gi|406838064|ref|ZP_11097658.1| GTPase [Lactobacillus vini DSM 20605]
Length = 292
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 112/230 (48%), Gaps = 31/230 (13%)
Query: 36 KRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
KRR+ LVGD+V + G + +F R ++ PPVANVD +++ S QP
Sbjct: 32 KRRIIPLVGDQVEFKPASL--KEGYLLEIFARKNSLVRPPVANVDAAIVVVSCQQPAFSA 89
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSL 153
L R LV E+ I + +K +L+ ++ L + + P+F E + L
Sbjct: 90 NLLDRQLVMLEAQKIKPVIYFSKQDLLSDQELKNFTKVFIAYACYPVF---EDSVKLQEY 146
Query: 154 LQR-LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212
LQR L+ Q V++G +G GKS+L+N F+P W R EV
Sbjct: 147 LQRQLKQQVLVVMGQTGAGKSTLLNK----------------FDPT----WNLTTR--EV 184
Query: 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
S RGKHTTR V+L+ G Y+ADTPGF+ L + Q+L Q FP+
Sbjct: 185 SKALSRGKHTTRKVALMAWK-GNYIADTPGFSSFELKNLDSQNLRQLFPD 233
>gi|406595379|ref|YP_006746509.1| GTPase RsgA [Alteromonas macleodii ATCC 27126]
gi|406372700|gb|AFS35955.1| GTPase RsgA [Alteromonas macleodii ATCC 27126]
Length = 330
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 124/264 (46%), Gaps = 40/264 (15%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDR--RGMIENVFQRSTEI 69
+ +D D G V R +++ V+ GDKV D + G+IE V R + +
Sbjct: 51 KHADVEDANGA----VSRCHIRRTVDSVVCGDKVFFSKGDDAESGVSGVIEIVKDRHSVL 106
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ ++ P L + R+LV E GI + LNKVEL+
Sbjct: 107 TRPDYYDGIKPIAANIDRIIVVSAI-LPTLSLNIIDRYLVACEDIGITPLIVLNKVELLS 165
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
EE T +L T+ GYE LF S ++ G+ L + L D +V VG SGVGKSSLIN
Sbjct: 166 EEERATVTEQLKTYENLGYEVLFTSCKTGEGISKLNEYLNDNISVFVGQSGVGKSSLINQ 225
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
+ P A D+ G++S SG G+HTT LL L GG L
Sbjct: 226 VL--PDA--------------------DELTGDISDNSGLGQHTTTAAKLLHLPAGGDLI 263
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPE 262
D+PG + L + + + F E
Sbjct: 264 DSPGVREFGLWHIPTERITWGFIE 287
>gi|224541741|ref|ZP_03682280.1| hypothetical protein CATMIT_00913 [Catenibacterium mitsuokai DSM
15897]
gi|224525345|gb|EEF94450.1| ribosome small subunit-dependent GTPase A [Catenibacterium
mitsuokai DSM 15897]
Length = 288
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 118/235 (50%), Gaps = 29/235 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + ++ LVGD + D G I ++ +R ++ PP+ N+D LL+FS
Sbjct: 25 CKARGKFRNRGQKPLVGD--FCSFQEEKDGSGYILSLDERHNQLERPPICNIDQALLVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P + L +FL E I + + K++L + E++ K + + Y+ F S +
Sbjct: 83 IAEPDFDQMLLDQFLAMVEYEKIKPIIIITKIDL-NRELVPVIKKKYN--AYDLYFVSSK 139
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G++ + L+++ TV+ G SGVGKSSL+NAL +
Sbjct: 140 ENEGIEEIKPLLKNRVTVVTGQSGVGKSSLLNALNIELNIE------------------- 180
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
E+S GRGKHTTRHV L+P+ GGY+ADTPGF+ LK+ LA T+
Sbjct: 181 ---TNEISQALGRGKHTTRHVELIPMY-GGYIADTPGFSSLE-LKMEPVELATTY 230
>gi|296327589|ref|ZP_06870135.1| ribosome-associated GTP-binding protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|296155415|gb|EFG96186.1| ribosome-associated GTP-binding protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 288
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 126/257 (49%), Gaps = 34/257 (13%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + + ++E +F+R ++ P VANVD+L +
Sbjct: 20 CKLRGILKKTNNKYNCVVGDRVEIS-----EDNSIVE-IFKRDNLLIRPIVANVDYLAIQ 73
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRLHTWGYEPL 140
F+ P ++ + L+ A I + +NK++ + EE L K S L
Sbjct: 74 FAAKHPNIDFERINLLLLTAFYYKIKPIVIVNKIDYLTEEELVELKEKLSFLERISVPMF 133
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S E IL
Sbjct: 134 LISCYQNIGLEEVENFLKDKITVIGGPSGVGKSSFINFLQS--------------ERIL- 178
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ GE+S + RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 179 -------KTGEISERLQRGKHTTRDSNMIKMKAGGYIIDTPGFSSIEVPNIENREELISL 231
Query: 260 FPEVCAVGLLYMIHMLH 276
FPE + ++ H
Sbjct: 232 FPEFLNIDSCKFLNCSH 248
>gi|19704014|ref|NP_603576.1| GTPase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gi|38257676|sp|Q8R685.1|RSGA_FUSNN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|19714202|gb|AAL94875.1| GTPase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 285
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 128/265 (48%), Gaps = 34/265 (12%)
Query: 18 DKTGVELLCVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
+ G C +R +LKK K +VGD+V + + ++E +F+R ++ P VA
Sbjct: 12 ESNGQVFECKLRGILKKTNNKYNCVVGDRVEIS-----EDNSIVE-IFKRDNLLIRPIVA 65
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRL 132
NVD+L + F+ P ++ + L+ A I + +NK++ + EE L K S L
Sbjct: 66 NVDYLAIQFAAKHPNIDFERINLLLLTAFYYKIKPIVIVNKIDYLTEEELVELKEKLSFL 125
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S
Sbjct: 126 ERISVPMFLISCYQNIGLEEVENFLKDKITVIGGPSGVGKSSFINFLQS----------- 174
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV- 251
E IL + GE+S + RGKHTTR +++ + GGY+ DTPGF+ + +
Sbjct: 175 ---ERIL--------KTGEISERLQRGKHTTRDSNMIKMKAGGYIIDTPGFSSIEVPNIE 223
Query: 252 TKQSLAQTFPEVCAVGLLYMIHMLH 276
++ L FPE + ++ H
Sbjct: 224 NREELISLFPEFLNIDSCKFLNCSH 248
>gi|293364729|ref|ZP_06611446.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
gi|291316179|gb|EFE56615.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
Length = 301
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I N+ +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 50 DWVDFSAEENSEGYILNIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 109
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 110 HKGIHPIVYISKMDLLEDRGELDFYEQTYGDIGYD----FVTSK---EELLPLLTGKVTV 162
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 163 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 200
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 201 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 242
>gi|333894628|ref|YP_004468503.1| GTPase RsgA [Alteromonas sp. SN2]
gi|332994646|gb|AEF04701.1| GTPase RsgA [Alteromonas sp. SN2]
Length = 348
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 117/250 (46%), Gaps = 37/250 (14%)
Query: 27 VVRALLKKIKRRVLVGDKVVVGSIDWVDR---RGMIENVFQRST--------EILDPPVA 75
V R +++ V+ GDKV+ D D RG+IE V R + + + P A
Sbjct: 62 VSRCHIRRTVDSVVCGDKVLFSKGDDADSGSVRGVIEIVNDRHSVLTRPDFYDGIKPIAA 121
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW 135
N+D ++++ S P L + R+LV E GI + LNKVEL+ + T +L +
Sbjct: 122 NIDKIIVV-SATLPSLSTHIIDRYLVACEDIGITPFIVLNKVELLSQSERETINQQLKVY 180
Query: 136 ---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GYE LF S ++ G+D L L + +V VG SGVGKSSLIN + P A
Sbjct: 181 NDLGYEVLFTSCKTGEGIDELNAYLDNNVSVFVGQSGVGKSSLINKVL--PGA------- 231
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
D GEVS SG G+HTT LL L GG L D+PG + L +
Sbjct: 232 -------------DILTGEVSDNSGLGQHTTTAAKLLHLPAGGDLIDSPGVREFGLWHIP 278
Query: 253 KQSLAQTFPE 262
+ + F E
Sbjct: 279 TERITWGFIE 288
>gi|417924566|ref|ZP_12568005.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK569]
gi|342835785|gb|EGU70015.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK569]
Length = 292
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L D+ TV
Sbjct: 101 HKGIHPIIYISKMDLLEDRSELDFYQQTYGDIGYD----FVTSK---EELLPLLTDKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L QTF E+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQTFTEIATV 233
>gi|365839615|ref|ZP_09380850.1| ribosome small subunit-dependent GTPase A [Anaeroglobus geminatus
F0357]
gi|364564456|gb|EHM42223.1| ribosome small subunit-dependent GTPase A [Anaeroglobus geminatus
F0357]
Length = 284
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 26/230 (11%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
K+K ++LVGD V + ++G+IE R + P VAN+D + ++ + P
Sbjct: 31 KMKEKILVGDMVEFTATGA--QKGVIEKTEPRKNSLRRPAVANIDAMFIVMAAAAPDPSR 88
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSL 153
F + + L+ E GI +L NK +L D+ + + + GY S + G+DSL
Sbjct: 89 FLIDQMLMTCEYDGIHPSLCFNKCDL-DKPLAEEYAAFYRRCGYAAYPVSACTGEGIDSL 147
Query: 154 LQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213
L + T GPSGVGKSSL+ +R I+G + VG+VS
Sbjct: 148 KALLDGKVTAFAGPSGVGKSSLL--MR-----------------IIGREL----AVGKVS 184
Query: 214 TKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
K GRG+HTTRH ++ L Y+ DTPGF+ + ++ + P++
Sbjct: 185 DKIGRGRHTTRHSEIMKLREHTYVIDTPGFSALDFTHLKEKEITSLMPDL 234
>gi|307702975|ref|ZP_07639922.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
ATCC 35037]
gi|307623368|gb|EFO02358.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
ATCC 35037]
Length = 292
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I N+ +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILNIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYEQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 233
>gi|307705633|ref|ZP_07642484.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK597]
gi|307620809|gb|EFN99894.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK597]
Length = 292
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 YKGIHPIVYISKMDLLEDREELDFYEQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIATV 233
>gi|407686228|ref|YP_006801401.1| GTPase RsgA [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|407289608|gb|AFT93920.1| GTPase RsgA [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 347
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 124/264 (46%), Gaps = 40/264 (15%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDR--RGMIENVFQRSTEI 69
+ +D D G V R +++ V+ GDKV D + G+IE V R + +
Sbjct: 51 KHADVEDANGA----VSRCHIRRTVDSVVCGDKVFFSKGDDAESGVSGVIEIVKDRHSVL 106
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ ++ P L + R+LV E GI + LNKVEL+
Sbjct: 107 TRPDYYDGIKPIAANIDRIIVVSAI-LPTLSLNIIDRYLVACEDIGITPLIVLNKVELLS 165
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
EE T +L T+ GYE LF S ++ G+ L + L D +V VG SGVGKSSLIN
Sbjct: 166 EEERATVTEQLKTYENLGYEVLFTSCKTGEGISKLNEYLNDNISVFVGQSGVGKSSLINQ 225
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
+ P A D+ G++S SG G+HTT LL L GG L
Sbjct: 226 VL--PDA--------------------DELTGDISDNSGLGQHTTTAAKLLHLPAGGDLI 263
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPE 262
D+PG + L + + + F E
Sbjct: 264 DSPGVREFGLWHIPTERITWGFIE 287
>gi|422857543|ref|ZP_16904193.1| GTP-binding protein [Streptococcus sanguinis SK1057]
gi|327462726|gb|EGF09048.1| GTP-binding protein [Streptococcus sanguinis SK1057]
Length = 292
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 115/240 (47%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSAKK--DSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEQSLDVYVQAYQSIGYEVIKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIAEV 233
>gi|375129183|ref|YP_004991277.1| ribosome small subunit-dependent GTPase A [Vibrio furnissii NCTC
11218]
gi|315178351|gb|ADT85265.1| ribosome small subunit-dependent GTPase A [Vibrio furnissii NCTC
11218]
Length = 353
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 102/196 (52%), Gaps = 24/196 (12%)
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LN 126
L P ANV+ ++++ S+ P+L + R+L+ AE+ I L LNKV+L+DE+
Sbjct: 115 LKPVAANVNQMVIVSSV-LPELSLNIIDRYLIAAETLAIAPLLVLNKVDLLDEDQRAQYE 173
Query: 127 TWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS 186
W S GY+ L+ S S G+++L +LRD+T + VG SGVGKSSL+NAL
Sbjct: 174 QWLSAYEKIGYDVLYVSKNSGEGIEALEAKLRDRTNIFVGQSGVGKSSLVNAL------- 226
Query: 187 DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246
++D E GE+S SG G+HTT L + GG L D+PG +
Sbjct: 227 -MPELDEMVEE------------GEISENSGLGQHTTTAARLYHIPSGGNLIDSPGVREF 273
Query: 247 SLLKVTKQSLAQTFPE 262
L + + + + F E
Sbjct: 274 GLWHLEAEDVTKAFVE 289
>gi|306824465|ref|ZP_07457811.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|304433252|gb|EFM36222.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. oral
taxon 071 str. 73H25AP]
Length = 301
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 50 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 109
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L +TTV
Sbjct: 110 HKGIHPIVYISKMDLLEDRGKLDFYQQTYGAIGYD----FVTSK---EELLPLLTGKTTV 162
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 163 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 200
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 201 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIATV 242
>gi|32472253|ref|NP_865247.1| GTPase [Rhodopirellula baltica SH 1]
gi|32443489|emb|CAD72931.1| conserved hypothetical protein-putative GTPase [Rhodopirellula
baltica SH 1]
Length = 386
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 127/264 (48%), Gaps = 45/264 (17%)
Query: 20 TGVELLCVVRALLKKI---KRRVLV-GDKV---------------VVGSIDWVD-RRGMI 59
GV C VR +LK + +R V+V GD+V G I+ V+ R GMI
Sbjct: 100 NGVLYACAVRQVLKSLSTSQRNVIVAGDRVWFRSESRDGVSLKSEADGMIERVEPRTGMI 159
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
+ +L V+N+D +L++ S +QP ++P + R ++ A I + +NKV+L
Sbjct: 160 SRTSRGRQHVL---VSNIDAMLIIASAEQPGIKPALIDRMILTAHQCQIEPIVIINKVDL 216
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+D L + GY L S E+ + L L+D+ T + G SGVGKSSL+NA+
Sbjct: 217 IDLVDLQPLIGVYSSLGYRVLPTSAETGQNVAYLRALLKDRQTALAGQSGVGKSSLLNAV 276
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
+P LG +G VS+ + +GKHTT L+PL+ GG + D
Sbjct: 277 ----------------QPGLGLA------IGAVSSDNDKGKHTTTASQLIPLADGGAVFD 314
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEV 263
TPG Q L ++ +A P++
Sbjct: 315 TPGIRQFQLWDISAGEVAGLMPDL 338
>gi|289764533|ref|ZP_06523911.1| GTPase [Fusobacterium sp. D11]
gi|289716088|gb|EFD80100.1| GTPase [Fusobacterium sp. D11]
Length = 297
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 124/257 (48%), Gaps = 34/257 (13%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + + + + +F+R ++ P VANVD+L +
Sbjct: 29 CKLRGILKKTNNKYNCVVGDRVEISEDNTIIK------IFKRDNMLIRPIVANVDYLAIQ 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRLHTWGYEPL 140
F+ P ++ + L+ A + + +NK++ + EE L K S L
Sbjct: 83 FAAKHPNIDFERINLLLLTAFYYKVKPIVIVNKIDYLTEEELCELKEKLSFLEKISVPMF 142
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S
Sbjct: 143 LISCHQNIGLEKVENFLKDKITVIGGPSGVGKSSFINFLQSE------------------ 184
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ + GE+S K RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 185 ----KTLKTGEISEKLQRGKHTTRDSNMIKMKVGGYIIDTPGFSSIEVPNIENREELISL 240
Query: 260 FPEVCAVGLLYMIHMLH 276
FPE ++ ++ H
Sbjct: 241 FPEFSSIESCKFLNCSH 257
>gi|307710851|ref|ZP_07647278.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK321]
gi|307617296|gb|EFN96469.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK321]
Length = 292
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 110/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKGPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D E L+ ++ GY+ V SK G LL L + TV
Sbjct: 101 HKGIHPIIYISKMDLLEDREELDFYEQTYGDIGYD----FVTSKEG---LLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIATV 233
>gi|157364705|ref|YP_001471472.1| ribosome small subunit-dependent GTPase A [Thermotoga lettingae
TMO]
gi|157315309|gb|ABV34408.1| ribosome small subunit-dependent GTPase A [Thermotoga lettingae
TMO]
Length = 279
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 129/254 (50%), Gaps = 33/254 (12%)
Query: 19 KTGVELLCVVRALLKKIKRRVLVGDKVVVGSI-DWV--DRRGMIENVFQRSTEILDPPVA 75
KT ++ C +R K L G K +VG I ++V G++E+V +R E+L P VA
Sbjct: 11 KTKEKIRCHLRGRFK------LQGLKPIVGDIVEYVRVQDAGVVESVLKRKNELLKPRVA 64
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW 135
N+D ++ ++++ +P++ L + LV E + + L LNK++L+ EE + T+
Sbjct: 65 NIDQVVCVYTIKKPEVSLLILDKLLVLIEEARLNVLLILNKIDLLTEEDKEKKDHFIKTY 124
Query: 136 G-YEPLFC-SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
PL C S ++ GL+ L + +D+ +V G SGVGKSSL+N++ P
Sbjct: 125 SKIYPLLCTSTKTGEGLEKLKEYFKDRLSVFAGLSGVGKSSLLNSI--CPGI-------- 174
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
+ R E+S ++ RGKHTT L+ L GG++ DTPGF+ + V
Sbjct: 175 ------------NLRTQEISERTKRGKHTTTAAELIHLPFGGHVVDTPGFSLIDISHVDP 222
Query: 254 QSLAQTFPEVCAVG 267
+L FPE G
Sbjct: 223 DNLKFYFPEFVENG 236
>gi|237741655|ref|ZP_04572136.1| GTPase [Fusobacterium sp. 4_1_13]
gi|294785734|ref|ZP_06751022.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
3_1_27]
gi|229429303|gb|EEO39515.1| GTPase [Fusobacterium sp. 4_1_13]
gi|294487448|gb|EFG34810.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
3_1_27]
Length = 252
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 120/240 (50%), Gaps = 32/240 (13%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
+GD+V + + +IE +F+R ++ P VANVD+L + F+ P ++ + L
Sbjct: 1 MGDRVEIS-----EDNTIIE-IFKRDNMLIRPIVANVDYLAIQFAAKHPNIDFERINLLL 54
Query: 101 VEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY--EPLF-CSVESKLGLDSLLQRL 157
+ A + + +NK++ + +E L K +L P+F S + L+ + L
Sbjct: 55 LTAFYYKVKPIVIVNKIDYLTKEELCELKEKLSFLEKISVPMFLISCHQNISLEEVENFL 114
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
+D+TTVI GPSGVGKSS IN L+S E IL + GE+S +
Sbjct: 115 KDKTTVIGGPSGVGKSSFINFLQS--------------ERIL--------KTGEISERLQ 152
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQTFPEVCAVGLLYMIHMLH 276
RGKHTTR +++ + GGY+ DTPGF+ + + ++ L FPE + ++ H
Sbjct: 153 RGKHTTRDSNMIKMKAGGYIIDTPGFSSIEVPNIENREELISLFPEFSNIESCKFLNCSH 212
>gi|422824472|ref|ZP_16872659.1| GTP-binding protein [Streptococcus sanguinis SK405]
gi|422825448|ref|ZP_16873627.1| GTP-binding protein [Streptococcus sanguinis SK678]
gi|422856574|ref|ZP_16903230.1| GTP-binding protein [Streptococcus sanguinis SK1]
gi|422863492|ref|ZP_16910123.1| GTP-binding protein [Streptococcus sanguinis SK408]
gi|324992521|gb|EGC24442.1| GTP-binding protein [Streptococcus sanguinis SK405]
gi|324995950|gb|EGC27861.1| GTP-binding protein [Streptococcus sanguinis SK678]
gi|327460745|gb|EGF07080.1| GTP-binding protein [Streptococcus sanguinis SK1]
gi|327472466|gb|EGF17897.1| GTP-binding protein [Streptococcus sanguinis SK408]
Length = 292
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 115/240 (47%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEQSLDVYVQAYQSIGYEVVKATEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIAEV 233
>gi|259047432|ref|ZP_05737833.1| ribosome small subunit-dependent GTPase A [Granulicatella adiacens
ATCC 49175]
gi|259035623|gb|EEW36878.1| ribosome small subunit-dependent GTPase A [Granulicatella adiacens
ATCC 49175]
Length = 296
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 114/241 (47%), Gaps = 29/241 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R + +K + LVGD V S + + G + + R I+ PPVANVD +++ S +
Sbjct: 28 RGVFRKRGQSPLVGDVVEFESSNL--QEGTLTKILPRKNTIVRPPVANVDVGIIVMSAVE 85
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCSVE 145
P+ + RFLV E + + + K +L+ E L + GY P+F E
Sbjct: 86 PEFSTHLVDRFLVYLEGLHVHPIIMVTKTDLLTAQGLEKLEEIRKNYQKIGY-PVFFGQE 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
L+ L+ Q + +G SGVGKS+L+N + P L
Sbjct: 145 VINDKTPFLEALKGQKVIFLGQSGVGKSTLLNEMI----------------PEL------ 182
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA 265
+Q GE+S GRG+HTTRHVSL + G ++ADTPGF+ + + K+ L FPE
Sbjct: 183 NQETGEISNALGRGRHTTRHVSLHEIE-GVWIADTPGFSTVDFMGIEKEDLPHLFPEFVE 241
Query: 266 V 266
V
Sbjct: 242 V 242
>gi|403069234|ref|ZP_10910566.1| GTPase RsgA [Oceanobacillus sp. Ndiop]
Length = 293
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 112/241 (46%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + K LVGD V + + G I + +R E++ PP+AN++ +++ S
Sbjct: 25 CKGRGVFRNRKITPLVGDFVQFEESNPGE--GYIMEIAERENELIRPPIANINQAIIVSS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFC 142
P L RFLV ES I + + K++L+ EE + +K GY
Sbjct: 83 AVSPDFSTVLLDRFLVLIESKHIQPLIFITKIDLISEEERRQIEEFKGIYENIGYTVELL 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + L L + D+ +V G SGVGKSSL+N L+ S A
Sbjct: 143 SSKEPDSLPDLEEYFADKVSVFAGQSGVGKSSLLNVLKPSLLLKTA-------------- 188
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S GRGKHTTRHV L+ ++ G +ADTPGF+ ++ + L FPE
Sbjct: 189 --------EISKSLGRGKHTTRHVELMQIN-RGLVADTPGFSILDFSEIEAEELTDCFPE 239
Query: 263 V 263
+
Sbjct: 240 M 240
>gi|416050980|ref|ZP_11577186.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347993504|gb|EGY34859.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 346
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 125/269 (46%), Gaps = 40/269 (14%)
Query: 11 SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTE 68
+R +D ++ G C +R L V+VGD+V+ G+ G+IE V R E
Sbjct: 50 ARHADVENERGGIFRCNLRRTLAG----VVVGDRVIWRQGNEQLQGVSGVIEGVHPRQNE 105
Query: 69 ILDPP--------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
I P AN+D ++++ S+ P L + R+LV E I + LNK +++
Sbjct: 106 ISRPDYYDGMKVIAANIDRIIIVSSV-LPSLSLNIIDRYLVVCEEAKIEPIIVLNKADML 164
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
E S+L + GY+ L S +S L+ L L D ++ VG SGVGKSSLIN
Sbjct: 165 TESQWQAVDSQLEIYRKIGYQTLMVSAQSGKNLEKLTALLSDGVSIFVGQSGVGKSSLIN 224
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
A+ PH + RVGE+S+ SG G+HTT L LS GG L
Sbjct: 225 AV--LPHV--------------------EARVGEISSTSGLGQHTTTSSRLYHLSQGGSL 262
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
D+PG + L + + + + + E V
Sbjct: 263 IDSPGIREFGLWHLEDEQITKGYREFQTV 291
>gi|383934270|ref|ZP_09987712.1| GTPase RsgA [Rheinheimera nanhaiensis E407-8]
gi|383704726|dbj|GAB57803.1| GTPase RsgA [Rheinheimera nanhaiensis E407-8]
Length = 344
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 130/267 (48%), Gaps = 50/267 (18%)
Query: 14 SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV-------VGSIDWVDRRGMIENVFQRS 66
+D D GV + R +++ ++ GDKVV G ID G+I+ V QR
Sbjct: 55 ADVEDSQGV----ITRCNMRRSVASLVTGDKVVWRRALQATGGID-----GVIDAVEQRH 105
Query: 67 TEILDP-------PVA-NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118
+ +L P PVA N+D L+++ S P L + R+LV AE TGI L +NKV+
Sbjct: 106 SVLLRPDFYDGLKPVAANID-LMIIVSAILPALSLNIIDRYLVAAEITGIKPLLVINKVD 164
Query: 119 LVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSL 175
L+++ L+ + +L + GY+ L S ++ +G+ LL L T++ VG SGVGKSSL
Sbjct: 165 LLNDNELSAVEQQLDLYSKLGYDFLLVSAKTGMGMAQLLDYLHSGTSIFVGQSGVGKSSL 224
Query: 176 INALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235
+N+L A EVS SG G+HTT L L GG
Sbjct: 225 MNSLMPGLEA----------------------LTQEVSATSGLGQHTTTVSRLYHLPEGG 262
Query: 236 YLADTPGFNQPSLLKVTKQSLAQTFPE 262
L D+PG + +L +T + + + F E
Sbjct: 263 DLIDSPGIREFALWHLTAEEVTRGFSE 289
>gi|417939530|ref|ZP_12582822.1| ribulose-phosphate 3-epimerase [Streptococcus infantis SK970]
gi|343390248|gb|EGV02831.1| ribulose-phosphate 3-epimerase [Streptococcus infantis SK970]
Length = 514
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ + + E LL L D+ TV
Sbjct: 101 HRGIHPIVYISKMDLLEDGGELDFYEKTYRAIGYDFVTSNEE-------LLPLLTDKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RVVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 233
>gi|325107214|ref|YP_004268282.1| ribosome biogenesis GTPase RsgA [Planctomyces brasiliensis DSM
5305]
gi|324967482|gb|ADY58260.1| ribosome biogenesis GTPase RsgA [Planctomyces brasiliensis DSM
5305]
Length = 375
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 120/250 (48%), Gaps = 37/250 (14%)
Query: 25 LCVVRALLKKI----KRRVLVGDKVVV-------GSIDWVD-RRGMIENVFQRSTEILDP 72
+C VR +L+ + + V+ GD+V+ G I V+ R G + RS +++
Sbjct: 102 VCAVRQILRTLSQNNRNAVVAGDRVLFEPAPGLQGMIHRVEPRTGTLGRGSGRSQQLI-- 159
Query: 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL 132
VANV+ ++ + P +P + RFL+ E G+ + +NK +LVD + +
Sbjct: 160 -VANVELAAIVIAAVSPHFKPSLVDRFLISCEKGGVKPLICINKADLVDPREMQPVIGQY 218
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ S E+ G+D+L R+ + TV G SGVGK+SL+N++
Sbjct: 219 ANLGYDVFLISAETGAGIDALRARILGRQTVFSGQSGVGKTSLLNSI------------- 265
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+P LG K VS SG+G+HTTR L L GG++ DTPG Q L V
Sbjct: 266 ---QPGLGLK------TSGVSDDSGKGRHTTRTAVLKRLENGGWVVDTPGIRQLRLWDVI 316
Query: 253 KQSLAQTFPE 262
++ + F E
Sbjct: 317 REEVEGFFIE 326
>gi|386288017|ref|ZP_10065183.1| GTPase RsgA [gamma proteobacterium BDW918]
gi|385278996|gb|EIF42942.1| GTPase RsgA [gamma proteobacterium BDW918]
Length = 336
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 102/196 (52%), Gaps = 26/196 (13%)
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLN 126
L P AN+DH++++ + +P+ + R+LV +E+ GI L LNK +LV+EE LN
Sbjct: 114 LKPVAANIDHIVIVIA-PEPRAHANLIDRYLVASEAIGIRPILLLNKTDLVNEENSDYLN 172
Query: 127 TWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS 186
+ +R GY S ES+ GLD L LR+ +V VG SGVGKSSL+N+L
Sbjct: 173 SMLARYEEIGYPVTRASTESEHGLDELKATLREHISVFVGQSGVGKSSLVNSL------- 225
Query: 187 DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246
+ G+ D R+G +S + +G+HTT L GG L D+PG +
Sbjct: 226 -----------LPGT----DSRIGALSEATAKGRHTTTTARLYHFPDGGSLIDSPGIREF 270
Query: 247 SLLKVTKQSLAQTFPE 262
+L + ++ + F E
Sbjct: 271 ALWNMDREKVLAGFIE 286
>gi|225850491|ref|YP_002730725.1| ribosome small subunit-dependent GTPase A [Persephonella marina
EX-H1]
gi|225645853|gb|ACO04039.1| ribosome small subunit-dependent GTPase A [Persephonella marina
EX-H1]
Length = 287
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 29/225 (12%)
Query: 42 GDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLV 101
GD V+ ID IE+V +R ++ PPVANVD ++++F++ +P + F L LV
Sbjct: 42 GDYVLGNVID--SETFAIESVEERKNFLVRPPVANVDKVIIVFTLKKPDFDSFLLDNLLV 99
Query: 102 EAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLR 158
E G + NK++L++++ L WK GY+ + S + G+D+L + ++
Sbjct: 100 VYEYLGAEPVIVFNKIDLLNDDERKELKRWKDIYINAGYDFIPVSAITGEGIDTLKEHIK 159
Query: 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218
+V GPSGVGKSS+++AL + +V ++S K+ R
Sbjct: 160 GNISVFAGPSGVGKSSILSALTGI-----------------------ELKVSQISEKTER 196
Query: 219 GKHTTRHVSLLPLSGGGYLADTPGFNQ-PSLLKVTKQSLAQTFPE 262
G+HTT V L + ++ DTPGF+ +L + K+ + F E
Sbjct: 197 GRHTTTGVRLYRFNENSFIGDTPGFSSVDALYFMEKREVKNYFRE 241
>gi|221133714|ref|ZP_03560019.1| ribosome-associated GTPase [Glaciecola sp. HTCC2999]
Length = 340
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 129/264 (48%), Gaps = 40/264 (15%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVG-SIDWVDRR-GMIENVFQRSTEI 69
+ ++ D+ GV+ C +R + V+ GD VV SI R G+IE V R T +
Sbjct: 47 KHANVEDEQGVQHKCHIRRTINS----VVCGDSVVFCPSISSEPRDLGVIEIVHDRKTVL 102
Query: 70 --------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ P AN+D ++++ S+ P L P + R+LV E I + +NK+EL++
Sbjct: 103 TRPDFYDGVKPIAANIDQIIIVSSI-VPTLSPHIIDRYLVACEDVQIQPVIVVNKMELLN 161
Query: 122 EE---VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
EE ++ + H GY+ L S + G+D L + L D +V VG SGVGKSSL+N
Sbjct: 162 EEDREMVIELLTIYHEIGYKVLLTSCVTGEGIDELAKLLTDNISVFVGQSGVGKSSLVNQ 221
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
L P A D+ VG++S SG G HTT LL + GG +
Sbjct: 222 LL--PEA--------------------DEVVGDISDNSGLGTHTTTTAKLLHFTQGGDVI 259
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPE 262
D+PG + SL + ++ + + F E
Sbjct: 260 DSPGVREFSLWHLPEEQITRGFIE 283
>gi|260774666|ref|ZP_05883571.1| ribosome small subunit-stimulated GTPase EngC [Vibrio
coralliilyticus ATCC BAA-450]
gi|260609385|gb|EEX35534.1| ribosome small subunit-stimulated GTPase EngC [Vibrio
coralliilyticus ATCC BAA-450]
Length = 351
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 131/273 (47%), Gaps = 54/273 (19%)
Query: 5 VQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV----VGSIDWVDRRGMIE 60
++ +E CN + G+E L + GDKV+ + S++ ++ G++E
Sbjct: 54 IEDAESGEIHRCNLRRGIETL--------------VSGDKVIWRAGLESMEGIN--GVVE 97
Query: 61 NVFQRSTEI--------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTL 112
V RS+ + L P ANVD ++++ S+ P+L + R+LV +E+ I L
Sbjct: 98 AVEPRSSVLTRPDYYDGLKPVAANVDQMVIVSSV-LPELSLNIIDRYLVASETLNIAPLL 156
Query: 113 ALNKVELVDEEVLN---TWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSG 169
LNK++L++EE N W S GY+ L S ++ G+ +L L+D+T + VG SG
Sbjct: 157 VLNKIDLLEEEQRNLYQEWLSEYERIGYKVLLVSKQTGEGIAALEAELKDRTNIFVGQSG 216
Query: 170 VGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229
VGKSSL+NAL + + GEVS SG G+HTT L
Sbjct: 217 VGKSSLVNALMPEFNVEE----------------------GEVSENSGLGQHTTTASRLY 254
Query: 230 PLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GG L D+PG + L + + + + F E
Sbjct: 255 HIPTGGDLIDSPGVREFGLWHLEAEEVTKAFVE 287
>gi|422866405|ref|ZP_16913030.1| GTP-binding protein [Streptococcus sanguinis SK1058]
gi|327488828|gb|EGF20627.1| GTP-binding protein [Streptococcus sanguinis SK1058]
Length = 312
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 115/240 (47%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLGDEQSLDVYVQAYQSIGYEVIKSTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIAEV 233
>gi|325957111|ref|YP_004292523.1| Ribosome biogenesis GTPase rsgA [Lactobacillus acidophilus 30SC]
gi|325333676|gb|ADZ07584.1| Ribosome biogenesis GTPase rsgA [Lactobacillus acidophilus 30SC]
Length = 296
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 115/241 (47%), Gaps = 36/241 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + ++ K++ VGD+V + +D +GM + + R I P VANV H+LL+ S
Sbjct: 29 ARGVFRQKKQKPAVGDRVEI----QIDDKGMSYLVKIMPRLNRIGRPAVANVSHVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFL + T+ L+K +L+D++ L+ K L + GY P+F
Sbjct: 85 AVEPDFSLELLDRFLTFFSWQKVKATIYLSKADLIDDDKLSEIKKSLAYYQEIGY-PVFT 143
Query: 143 SVES-KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
++ + L+ +DQ + G SG GKS+L+N L+ H
Sbjct: 144 DYHDVQIKIPELIG--KDQIWTLAGQSGAGKSTLLNHLKEDAH----------------- 184
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
Q GE+ST RGKHTTR V L L G G+LADTPGF+ L + L F
Sbjct: 185 -----QATGEISTSLNRGKHTTRKVELFKL-GEGFLADTPGFSSIDLTPIKLNELCNYFV 238
Query: 262 E 262
E
Sbjct: 239 E 239
>gi|159900112|ref|YP_001546359.1| ribosome small subunit-dependent GTPase A [Herpetosiphon
aurantiacus DSM 785]
gi|159893151|gb|ABX06231.1| ribosome small subunit-dependent GTPase A [Herpetosiphon
aurantiacus DSM 785]
Length = 306
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 127/261 (48%), Gaps = 44/261 (16%)
Query: 18 DKTGVELLCVVRALLKKIKRR---VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP- 73
D+TG L C +R LKK K+ +GD V + + G++E ++ R +++
Sbjct: 18 DETGETLRCTLRGRLKKTKQYSDLATLGDFVRITPT--IPNEGVVEEIYPRRSKLARTAI 75
Query: 74 ---------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD--- 121
VAN+D +L+ F++ P+ + RFLV AE+ + + + NK +LV
Sbjct: 76 KGAHFEQVIVANLDIVLITFAVAHPEPHVRMIDRFLVIAEANNLDVAIIANKCDLVSDSH 135
Query: 122 EEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
++V ++ GY + SV + G++ + + + ++ + GPSGVGKSSL+NA+
Sbjct: 136 QKVFGIYEQ----IGYPVFYTSVSTGQGIEQVQEIIHNKISAFTGPSGVGKSSLLNAI-- 189
Query: 182 SPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241
+P L + R G+VS +G+HTT L+PL GG++ADTP
Sbjct: 190 --------------QPGL------NLRTGDVSDAVNKGQHTTVAGELVPLHAGGFVADTP 229
Query: 242 GFNQPSLLKVTKQSLAQTFPE 262
G + L ++ L F E
Sbjct: 230 GIRELGLYQMEPDELEWCFRE 250
>gi|227890680|ref|ZP_04008485.1| GTP-binding protein [Lactobacillus salivarius ATCC 11741]
gi|227867618|gb|EEJ75039.1| GTP-binding protein [Lactobacillus salivarius ATCC 11741]
Length = 304
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 35/227 (15%)
Query: 46 VVGSIDWVDRR------GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
VVG DWVD + G I ++ R +++ PP+AN+D +++ + +P P L R
Sbjct: 48 VVG--DWVDFKIDDNGDGYILKIYPRKNQLVRPPIANIDTAIVVSACVEPDFSPNLLDRQ 105
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG-YEPLFCSVESKLG---LDSLLQ 155
LV ES + L +K +L+++E ++S + + Y + S E++ L++L+
Sbjct: 106 LVMLESNNVRPVLFFSKADLLNQEQREKFESYFNYYSKYYSCYISFENENRQNVLNNLMS 165
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
L ++ V++G +G GKS+L+N L+ P L + G++S
Sbjct: 166 DLTNEIVVVMGQTGAGKSTLLNDLK----------------PDL------NLETGKISKA 203
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RGKHTTR V+LL ++ G +ADTPGF+ LL +TK++L +P+
Sbjct: 204 LSRGKHTTRKVTLLDIN-GVMIADTPGFSSFELLNITKETLPLMYPD 249
>gi|89895430|ref|YP_518917.1| hypothetical protein DSY2684 [Desulfitobacterium hafniense Y51]
gi|89334878|dbj|BAE84473.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 296
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 32/249 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + +G IE V R ++ P +ANVD L+F+
Sbjct: 25 CSLRGRFRIRNQGFLPGDRVKI--LPGTGDKGTIEEVETRHNSLVRPTIANVDQAFLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL---VDEEVLNTWKSR----LHTWGYE 138
P + L R +V+ + I L LNK++L + V NT+ + G E
Sbjct: 83 CVSPAPDLNLLDRLIVQVTAAQIKPILVLNKIDLGSRGESIVENTFPADGLDFYRQLGCE 142
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S ++ GL L + + + +V+ GPSGVGKSSL+NAL SP
Sbjct: 143 LVKVSTKTGEGLAELQEHINGKVSVLAGPSGVGKSSLVNAL--SPGL------------- 187
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ + G+VS K RG+HTTRHV L+ + G G LADTPGF+ L + ++ L
Sbjct: 188 -------ELKTGDVSRKLKRGRHTTRHVELM-VCGEGLLADTPGFSSLYLPAMKREELTD 239
Query: 259 TFPEVCAVG 267
F E VG
Sbjct: 240 YFWEFQDVG 248
>gi|417935751|ref|ZP_12579068.1| ribosome small subunit-dependent GTPase A [Streptococcus infantis
X]
gi|343402660|gb|EGV15165.1| ribosome small subunit-dependent GTPase A [Streptococcus infantis
X]
Length = 292
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ +K GY+ V SK + LL L ++ TV
Sbjct: 101 HKGIHPIVYISKMDLLEDGGELDFYKQTYGAIGYD----FVTSK---EELLPLLTEKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIARV 233
>gi|87121901|ref|ZP_01077786.1| ribosome-associated GTPase [Marinomonas sp. MED121]
gi|86162699|gb|EAQ63979.1| ribosome-associated GTPase [Marinomonas sp. MED121]
Length = 342
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 99/196 (50%), Gaps = 26/196 (13%)
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
L P AN+DH++++ + +P + R+LV AE+ GIP + LNK++L+DE +
Sbjct: 119 LKPIAANIDHIIVVVAA-EPLAHANLIDRYLVAAETAGIPPVILLNKIDLIDESNKESLD 177
Query: 130 SRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS 186
L T+ GY+ L S + K +D L + L D+T+V VG SGVGKSSL+N L
Sbjct: 178 QLLQTYDDLGYQVLRTSTKQKDSMDDLYRFLGDKTSVFVGQSGVGKSSLVNTLLPGV--- 234
Query: 187 DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246
D VGE+S K +G HTT L + GG L D+PG +
Sbjct: 235 -------------------DLSVGELSQKRKKGTHTTTTARLFHMPKGGDLIDSPGIREF 275
Query: 247 SLLKVTKQSLAQTFPE 262
L ++ + L + F E
Sbjct: 276 GLWHISIEELLEGFIE 291
>gi|423136515|ref|ZP_17124158.1| putative ribosome biogenesis GTPase RsgA [Fusobacterium nucleatum
subsp. animalis F0419]
gi|371961669|gb|EHO79293.1| putative ribosome biogenesis GTPase RsgA [Fusobacterium nucleatum
subsp. animalis F0419]
Length = 297
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 122/257 (47%), Gaps = 34/257 (13%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 29 CKLRGILKKTNNKYNCVVGDRV------EISEDNTIVEIFKRDNMLIRPIVANVDYLAIQ 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRLHTWGYEPL 140
F+ P ++ + L+ A + + +NK++ + EE L K S L
Sbjct: 83 FAAKHPNIDFERINLLLLTAFYYKVKPIVIVNKIDYLTEEELCELKEKLSFLEKISVPMF 142
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S E L
Sbjct: 143 LISCHQNIGLEKVENFLKDKITVIGGPSGVGKSSFINFLQS--------------EKTL- 187
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ GE+S K RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 188 -------KTGEISEKLQRGKHTTRDSNMIKMKVGGYIIDTPGFSSIEVPNIENREELISL 240
Query: 260 FPEVCAVGLLYMIHMLH 276
FPE + ++ H
Sbjct: 241 FPEFSNIESCKFLNCSH 257
>gi|291458609|ref|ZP_06597999.1| ribosome small subunit-dependent GTPase A [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291419142|gb|EFE92861.1| ribosome small subunit-dependent GTPase A [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 303
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 113/243 (46%), Gaps = 28/243 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRR--GMIENVFQRSTEILDPPVANVDHLLLL 83
C + + + + + LVGD+V + + DR G + + +R ++L P V+NVD ++L
Sbjct: 26 CRAKGIFRNRREKPLVGDEVELSPVQNSDRERSGNLIRILRRKNQLLRPEVSNVDQAVVL 85
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWG-YEP 139
FS+ P L RFL+ E IP+ + NK +L+ +E R++ Y
Sbjct: 86 FSLRDPSPSLPLLDRFLIHMEMQEIPVRILFNKADLLVTEEERERALELQRIYEGASYSV 145
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
SV + LL R +++V+ GPSGVGKSSLIN + P A
Sbjct: 146 RLLSVRRADCREELLSLFRGKSSVLSGPSGVGKSSLINLI--HPEAR------------- 190
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S K RGK+TTRH L Y+ DTPGF+ + + + L
Sbjct: 191 -------METGELSRKIRRGKNTTRHTEFFYLDEESYVMDTPGFSSLYVSGIEAERLRYF 243
Query: 260 FPE 262
+PE
Sbjct: 244 YPE 246
>gi|423074024|ref|ZP_17062758.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
hafniense DP7]
gi|361855118|gb|EHL07120.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
hafniense DP7]
Length = 296
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 122/258 (47%), Gaps = 32/258 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + +G IE V R ++ P +ANVD L+F+
Sbjct: 25 CSLRGRFRIRNQGFLPGDRVKI--LPGTGDKGTIEEVETRHNSLVRPTIANVDQAFLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL---VDEEVLNTWKSR----LHTWGYE 138
P + L R +V+ + I L LNK++L + NT+ + G E
Sbjct: 83 CVSPAPDLNLLDRLIVQVTAAQIKPILILNKIDLGSRGESTAENTFPADGLDFYRQLGCE 142
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S ++ GL L + + + +V+ GPSGVGKSSL+NAL SP
Sbjct: 143 LVKVSTKTGEGLAELQEHINGKVSVLAGPSGVGKSSLVNAL--SPGL------------- 187
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ + G+VS K RG+HTTRHV L+ + G G LADTPGF+ L + ++ L
Sbjct: 188 -------ELKTGDVSRKLKRGRHTTRHVELM-VCGEGLLADTPGFSSLYLPAMKREELTD 239
Query: 259 TFPEVCAVGLLYMIHMLH 276
F E VG + H
Sbjct: 240 YFWEFQDVGECRFANCQH 257
>gi|422711155|ref|ZP_16768088.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0027]
gi|315034820|gb|EFT46752.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX0027]
Length = 297
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 109/231 (47%), Gaps = 30/231 (12%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156
LV E I + L KV+L+DE + + K GY + + E L +
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVI--ASEDVEATKELERF 156
Query: 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 157 FPERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQSL 194
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
GRGKH TRHV L+PL G +ADTPGF+ L++ L + FPE A
Sbjct: 195 GRGKHPTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEFVAAA 244
>gi|320103069|ref|YP_004178660.1| ribosome small subunit-dependent GTPase A [Isosphaera pallida ATCC
43644]
gi|319750351|gb|ADV62111.1| ribosome small subunit-dependent GTPase A [Isosphaera pallida ATCC
43644]
Length = 423
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 111/216 (51%), Gaps = 26/216 (12%)
Query: 48 GSIDWVDRR-GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST 106
G I+ V+RR G++ +++ +L VANVD LL++ + + P L+P + R+L+ AE
Sbjct: 177 GFIEKVERRRGIVTRGYRKREHVL---VANVDQLLIVSAFEDPGLKPGLIDRYLISAERG 233
Query: 107 GIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVG 166
G+ + NK +LVD GYE L SV+S +GLD L L+ T + G
Sbjct: 234 GVRPVIVFNKADLVDLAHYQWIVGLYAQLGYETLVTSVKSGVGLDRLRTILQRGITALSG 293
Query: 167 PSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226
SGVGKSSLINA+ + H +VGEVS+++ +GKHTT
Sbjct: 294 QSGVGKSSLINAVDPAIHL----------------------KVGEVSSQTHKGKHTTTTA 331
Query: 227 SLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
L+ S GG++ DTPG Q L V + FPE
Sbjct: 332 ELIRTSSGGFVVDTPGLRQFELWGVVPSEIEGYFPE 367
>gi|313678689|ref|YP_004056429.1| ribosome small subunit-dependent GTPase A [Mycoplasma bovis PG45]
gi|339320746|ref|YP_004683268.1| GTPase EngC [Mycoplasma bovis Hubei-1]
gi|392429819|ref|YP_006470864.1| GTPase [Mycoplasma bovis HB0801]
gi|312950784|gb|ADR25379.1| ribosome small subunit-dependent GTPase A [Mycoplasma bovis PG45]
gi|338226871|gb|AEI89933.1| GTPase EngC [Mycoplasma bovis Hubei-1]
gi|392051228|gb|AFM51603.1| GTPase [Mycoplasma bovis HB0801]
Length = 281
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 115/228 (50%), Gaps = 34/228 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD V +DR I +++R E + P VAN+DH++++ S+ +P+ + F + ++
Sbjct: 39 LVGDNVEFE----IDR--YITKIYERKNEFIRPKVANIDHIIIVMSLHEPEFQSFLVDKY 92
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+ ES I L + K +L N +K+ GY+ S ++ ++++ + +
Sbjct: 93 MALIESANIEPILFITKTDL----GANKYKNEYENLGYKVYELSYKTDEWVNNIKELFTN 148
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+T V++G SGVGK++L+N + S A V +S + RG
Sbjct: 149 KTNVLMGQSGVGKTTLVNKITGSNFA-----------------------VQSISKFANRG 185
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
KHTTR V ++ + G L DTPGF+ + ++KQ LA ++ + +G
Sbjct: 186 KHTTRIVQIVNVFDNGELIDTPGFSSLD-INLSKQQLAYSYKQFKELG 232
>gi|414159211|ref|ZP_11415501.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. F0441]
gi|410868208|gb|EKS16176.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. F0441]
Length = 292
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPVVYISKMDLLGDRGELDFFQQTYRAIGYD----FVTSK---EELLPLLTAKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPEV +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEVASV 233
>gi|312865632|ref|ZP_07725856.1| ribosome small subunit-dependent GTPase A [Streptococcus downei
F0415]
gi|311098753|gb|EFQ56973.1| ribosome small subunit-dependent GTPase A [Streptococcus downei
F0415]
Length = 290
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 100/219 (45%), Gaps = 37/219 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD +G I + +R ++ PP+ N+D +++ S +P L RFLV E
Sbjct: 41 DWVDFSAEENSQGYILKIHERKNSLVRPPIVNIDQAVVIMSAKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K +L+ DE + GYE FC LD LL +L+ QTTV
Sbjct: 101 HKGIKPLVYISKTDLLEDENQIKAIGQHYQAIGYE--FC-----WSLDQLLPKLKGQTTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A +S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKIAPELELETKA----------------------ISNSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
R VS + GG +ADTPGF+ L Q FPE
Sbjct: 192 RAVSFYNVHGGK-IADTPGFSSIDYEVSDSAQLNQAFPE 229
>gi|418961225|ref|ZP_13513112.1| GTPase [Lactobacillus salivarius SMXD51]
gi|380344892|gb|EIA33238.1| GTPase [Lactobacillus salivarius SMXD51]
Length = 296
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 35/227 (15%)
Query: 46 VVGSIDWVDRR------GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
VVG DWVD + G I ++ R +++ PP+ANVD +++ + +P P L R
Sbjct: 40 VVG--DWVDFKIDDNGDGYILKIYPRKNQLVRPPIANVDTAIVVSACVEPDFSPNLLDRQ 97
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG-YEPLFCSVESKLG---LDSLLQ 155
LV ES + L +K +L+++E ++S + + Y + S E++ L++L+
Sbjct: 98 LVMLESNNVRPVLFFSKADLLNQEQREKFESYFNYYSKYYSCYISFENENRQNVLNNLMS 157
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
L ++ V++G +G GKS+L+N L+ P S G++S
Sbjct: 158 DLTNEIVVVMGQTGAGKSTLLNDLK--PDLS--------------------LETGKISKA 195
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RGKHTTR V+LL ++ G +ADTPGF+ LL +TK +L +P+
Sbjct: 196 LSRGKHTTRKVTLLDIN-GVMIADTPGFSSFELLNITKDTLPLMYPD 241
>gi|322375824|ref|ZP_08050335.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. C300]
gi|321279092|gb|EFX56134.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. C300]
Length = 292
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYEQTYRAIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 233
>gi|375089342|ref|ZP_09735669.1| ribosome small subunit-dependent GTPase A [Facklamia languida CCUG
37842]
gi|374567118|gb|EHR38349.1| ribosome small subunit-dependent GTPase A [Facklamia languida CCUG
37842]
Length = 307
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 33/244 (13%)
Query: 29 RALLKKIKRRVLVGDKVVVGSI-DWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R + +K + LVGD V+ I D + G + + R +L PPVANVD +++ S+
Sbjct: 35 RGNFRHLKMKPLVGDYVIFEPIADQEEAVGRLVEILPRENALLRPPVANVDFAIIVTSLR 94
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV--------DEEVLNTWKSRLHTWGYEP 139
+P+ L FLV ES GI + L K +L+ + ++ ++ GY+
Sbjct: 95 EPEFSYNLLDYFLVFVESHGIQPIILLTKYDLLVAALGQDQAQAQVDQIRATYQAAGYD- 153
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
L + +++ L+++ +++ T V++G SGVGKS+L+N L AA ++
Sbjct: 154 LLVNDQTQQSLEAVKHLIQEGTYVVMGQSGVGKSTLLNQL------IPAAAIET------ 201
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G +S+ RGKHTTR V+L G +ADTPGF+ L ++ K+ L Q
Sbjct: 202 ----------GAISSSLNRGKHTTREVTLYRYH-QGLIADTPGFSAVDLSQIAKEDLGQY 250
Query: 260 FPEV 263
FPE+
Sbjct: 251 FPEI 254
>gi|149910188|ref|ZP_01898834.1| ribosome-associated GTPase [Moritella sp. PE36]
gi|149806774|gb|EDM66738.1| ribosome-associated GTPase [Moritella sp. PE36]
Length = 350
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 123/262 (46%), Gaps = 40/262 (15%)
Query: 14 SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTEI-- 69
+D D+ G+ C +R + + + GD+VV +G+ G+IE V +R T +
Sbjct: 56 ADVEDENGIIHRCNLRRSIVSL----VTGDRVVWRLGNEQLQGISGIIEAVHERRTVLTR 111
Query: 70 ------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
+ P AN+D ++++ S+ P+ + R++V AE I + LNK++L+
Sbjct: 112 PDFYDGIKPIAANIDQIVIVSSV-VPEFSTNIIDRYIVAAEDVKIRPVILLNKIDLLSPN 170
Query: 124 VLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
L T +L T+ GYE S GL L L+D TT+ VG SGVGKSSL+NAL
Sbjct: 171 ELFTINQQLQTYRDIGYEVWQVSSTEGKGLGELQGLLKDNTTIFVGQSGVGKSSLVNALM 230
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
H +VG+VS KSG G HTT L GG L D+
Sbjct: 231 PELHI----------------------QVGDVSVKSGLGTHTTTTARLYHFPSGGDLIDS 268
Query: 241 PGFNQPSLLKVTKQSLAQTFPE 262
PG + SL + + +A F E
Sbjct: 269 PGVREFSLWHMKPEEIANGFIE 290
>gi|219669860|ref|YP_002460295.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
hafniense DCB-2]
gi|219540120|gb|ACL21859.1| ribosome small subunit-dependent GTPase A [Desulfitobacterium
hafniense DCB-2]
Length = 296
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 120/249 (48%), Gaps = 32/249 (12%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + L GD+V + + +G IE V R ++ P +ANVD L+F+
Sbjct: 25 CSLRGRFRIRNQGFLPGDRVKI--LPGTGDKGTIEEVETRHNSLVRPTIANVDQAFLVFA 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL---VDEEVLNTWKSR----LHTWGYE 138
P + L R +V+ + I L LNK++L + NT+ + G E
Sbjct: 83 CVSPAPDLNLLDRLIVQVTAAQIKPILVLNKIDLGSRGESTAENTFPADGLDFYRQLGCE 142
Query: 139 PLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI 198
+ S ++ GL L + + + +V+ GPSGVGKSSL+NAL SP
Sbjct: 143 LVKVSTKTGEGLAELQEHINGKVSVLAGPSGVGKSSLVNAL--SPGL------------- 187
Query: 199 LGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258
+ + G+VS K RG+HTTRHV L+ + G G LADTPGF+ L + ++ L
Sbjct: 188 -------ELKTGDVSRKLKRGRHTTRHVELM-VCGEGLLADTPGFSSLYLPAMKREELTD 239
Query: 259 TFPEVCAVG 267
F E VG
Sbjct: 240 YFWEFQDVG 248
>gi|372268156|ref|ZP_09504204.1| GTPase RsgA [Alteromonas sp. S89]
Length = 343
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 120/252 (47%), Gaps = 44/252 (17%)
Query: 26 CVVRALLKKIKRRVLVGDKVV--------VGSIDWVDRRGMIENVFQRSTEILDPP--VA 75
C VRA + + + GDKV G + V R + QR D A
Sbjct: 71 CHVRANIDTL----VTGDKVAWNPATGEATGGLGVVGARLPRHSELQRPDRYGDMKTVAA 126
Query: 76 NVDHLLLLFSMDQPKLEPFA--LTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
N+D +L++ + P EPFA + R+LV AE+TGI L LNK++L+D+ + L
Sbjct: 127 NIDRILIVIA---PYPEPFANAIDRYLVAAETTGIQPLLLLNKIDLIDDSNREHLEDLLQ 183
Query: 134 TW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
+ GY L S ++ GLD LL+ L + T+V VG SGVGKSSLIN L S
Sbjct: 184 PYPDLGYPVLKLSTKTGEGLDRLLETLAEGTSVFVGQSGVGKSSLINGLLPSA------- 236
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
D R G +S +G+G HTT L L GG L D+PG + +
Sbjct: 237 ---------------DARTGALSQATGKGTHTTTAAELFHLPTGGDLIDSPGIREFGIWH 281
Query: 251 VTKQSLAQTFPE 262
+++Q+L + + E
Sbjct: 282 MSEQALLEGYVE 293
>gi|163753011|ref|ZP_02160135.1| ribosome-associated GTPase [Kordia algicida OT-1]
gi|161326743|gb|EDP98068.1| ribosome-associated GTPase [Kordia algicida OT-1]
Length = 317
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 121/266 (45%), Gaps = 43/266 (16%)
Query: 21 GVELLCVVRA--LLKKIKRR--VLVGDKVVVGSIDWVD-RRGMIENVFQRSTEILDPPV- 74
G E C ++ LK IK + VGDKV D G+I+ +F R I+ V
Sbjct: 20 GKEYECRIKGKFRLKGIKSTNPIAVGDKVNFTLETNNDVETGIIDEIFDRKNYIIRKSVN 79
Query: 75 ---------ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE--- 122
AN+D + LL ++D P P + RFLV AE+ IP LA NK++ E
Sbjct: 80 LSKQTHIIAANIDQVFLLITIDNPPTFPSFIDRFLVTAEAYSIPCVLAFNKIDSYTEIER 139
Query: 123 --EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
EV+ K GYE + S + + +D++ +R++ ++ G SGVGKS+L+NA+
Sbjct: 140 RAEVM-YLKDIYENIGYECIEISAKEQKNVDAIKERMKGTVSMFAGHSGVGKSTLVNAIA 198
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
P L K E+S + +G+HTT + L G + DT
Sbjct: 199 ----------------PELNLK------TKEISEQHKQGQHTTTFAEMFDLKFGAKIIDT 236
Query: 241 PGFNQPSLLKVTKQSLAQTFPEVCAV 266
PG ++ + K+ + FPE A+
Sbjct: 237 PGIKGFGIVDMEKEEVGDYFPEFFAL 262
>gi|422868034|ref|ZP_16914588.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1467]
gi|329576769|gb|EGG58262.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
TX1467]
Length = 297
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 109/231 (47%), Gaps = 30/231 (12%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
L GD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LEGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156
LV E I + L KV+L+DE + + K GY + + E L +
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALGYAVI--ASEDVEATKELERF 156
Query: 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 157 FPERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQSL 194
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE A
Sbjct: 195 GRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEFVAAA 244
>gi|422850716|ref|ZP_16897386.1| GTP-binding protein [Streptococcus sanguinis SK150]
gi|325695464|gb|EGD37364.1| GTP-binding protein [Streptococcus sanguinis SK150]
Length = 292
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIEERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + GYE L + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEQSLDVYVQAYQAIGYEVLKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIA 231
>gi|227517274|ref|ZP_03947323.1| GTP-binding protein [Enterococcus faecalis TX0104]
gi|424677372|ref|ZP_18114224.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV103]
gi|424681014|ref|ZP_18117810.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV116]
gi|424685263|ref|ZP_18121963.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV129]
gi|424688617|ref|ZP_18125222.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV25]
gi|424690591|ref|ZP_18127123.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV31]
gi|424694327|ref|ZP_18130730.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV37]
gi|424697945|ref|ZP_18134257.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV41]
gi|424701499|ref|ZP_18137671.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV62]
gi|424704549|ref|ZP_18140644.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV63]
gi|424711677|ref|ZP_18143889.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV65]
gi|424716456|ref|ZP_18145767.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV68]
gi|424721972|ref|ZP_18151039.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV72]
gi|424724710|ref|ZP_18153648.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV73]
gi|424727582|ref|ZP_18156211.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV81]
gi|424744477|ref|ZP_18172771.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV85]
gi|424753888|ref|ZP_18181817.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV93]
gi|227075281|gb|EEI13244.1| GTP-binding protein [Enterococcus faecalis TX0104]
gi|402352401|gb|EJU87252.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV116]
gi|402354665|gb|EJU89468.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV103]
gi|402359244|gb|EJU93886.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV129]
gi|402360076|gb|EJU94685.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV25]
gi|402363789|gb|EJU98247.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV31]
gi|402370983|gb|EJV05162.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV37]
gi|402371530|gb|EJV05687.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV62]
gi|402374181|gb|EJV08217.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV41]
gi|402381571|gb|EJV15274.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV63]
gi|402383109|gb|EJV16726.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV65]
gi|402387973|gb|EJV21425.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV68]
gi|402390009|gb|EJV23381.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV72]
gi|402393997|gb|EJV27196.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV73]
gi|402396257|gb|EJV29326.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV81]
gi|402398808|gb|EJV31725.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV85]
gi|402403414|gb|EJV36088.1| ribosome small subunit-dependent GTPase A [Enterococcus faecalis
ERV93]
Length = 297
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 110/232 (47%), Gaps = 32/232 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R E++ PPVANVD +++ SM P L RF
Sbjct: 41 LVGDEVLFESDNLTD--GYVLEILPRRNELVRPPVANVDLGVVVMSMVSPNFSFNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCS-VESKLGLDSLLQ 155
LV E I + L KV+L+DE + + K Y + VE+ L+
Sbjct: 99 LVSLEYKDIEPVIYLTKVDLLDEPQRQEVTEIKQIYEALDYAVIASEDVEATKELERFFP 158
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
++ TV +G SG GKS+L+N + SP A E+S
Sbjct: 159 ---ERLTVFMGQSGAGKSTLLNQI--SPELQLAT--------------------AEISQS 193
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
GRGKHTTRHV L+PL G +ADTPGF+ L++ L + FPE A
Sbjct: 194 LGRGKHTTRHVELIPLY-DGLVADTPGFSAIDFLEMEAVELPKQFPEFVAAA 244
>gi|338731525|ref|YP_004660917.1| ribosome small subunit-dependent GTPase A [Thermotoga thermarum DSM
5069]
gi|335365876|gb|AEH51821.1| ribosome small subunit-dependent GTPase A [Thermotoga thermarum DSM
5069]
Length = 295
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 30/229 (13%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C +R + + +VGD +V +D G+IE++ +R E+L P VAN+D ++ + +
Sbjct: 31 CYLRGRFRLQDLKPIVGD--IVEYTKVLDG-GVIESILKRKNELLKPRVANIDQVICVCT 87
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG-YEPLFC-S 143
+ +P++ + + LV E TG+ + LNK++L+ EE + + +G PL C S
Sbjct: 88 LKRPEVPLLVVDKLLVLVEQTGLDAVVVLNKIDLLTEEDEPKKQEFIKAYGSIYPLICTS 147
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
++ GLD L + L+D+ +V G SGVGKS+++NA+ P S
Sbjct: 148 AKTGEGLDKLKEVLKDKVSVFAGVSGVGKSTILNAI--CPGVS----------------- 188
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ EVS K+ RG+HTT L+ GG++ DTPGF SL+++T
Sbjct: 189 ---LKTQEVSEKTERGRHTTTSAELITFPFGGHVVDTPGF---SLIEIT 231
>gi|419808739|ref|ZP_14333638.1| GTPase EngC [Mycoplasma agalactiae 14628]
gi|390605644|gb|EIN15022.1| GTPase EngC [Mycoplasma agalactiae 14628]
Length = 281
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 113/228 (49%), Gaps = 34/228 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD V ++ I +++R E + P VAN+DH++++ S+ +P+ + F + ++
Sbjct: 39 LVGDYV------EFEKEKYITKIYERQNEFIRPKVANIDHIIIVMSIHEPEFQSFLVDKY 92
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+ ES I L + K +L ++ +K+ + GY+ S ++ + + +
Sbjct: 93 MAFIESANIEPVLFITKTDL----GVSKYKNEYESLGYKVYEISYKTDAWVKDIANLFTN 148
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+T V++G SGVGK++L+N + S A V +S + RG
Sbjct: 149 KTNVLMGQSGVGKTTLVNKITGSNFA-----------------------VQSISKFANRG 185
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
KHTTR V ++ + G L DTPGF+ + +TKQ LA ++ + +G
Sbjct: 186 KHTTRIVQIVNVFDNGELIDTPGFSSLD-INLTKQQLAYSYKQFKELG 232
>gi|346224407|ref|ZP_08845549.1| GTPase RsgA [Anaerophaga thermohalophila DSM 12881]
Length = 308
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 109/241 (45%), Gaps = 42/241 (17%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQR-------------STEILDPPVANVDHLLLLFS 85
V VGD+V S D G+IE + +R T+IL AN+D +L+ +
Sbjct: 43 VAVGDRVKY-SFDQSSGVGVIEEILERRNFIVRRASNLSRQTQIL---AANIDQAILVAT 98
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
++ P P + RFL E+ IP TL NK + D + LN S GY L
Sbjct: 99 INYPVTTPVFIDRFLATTEAYDIPTTLIFNKTDRYDHFHRDQLNETISIYKNIGYNVLAT 158
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S L S+ + L+D+ +++ G SGVGKS+LIN + EP L K
Sbjct: 159 SARYDEDLQSVKELLKDKVSLLAGHSGVGKSTLINRI----------------EPSLNLK 202
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++S GKHTT + PLS GGY+ DTPG L + K+ L+ F E
Sbjct: 203 ------TAKISDAHKTGKHTTTFAEMHPLSFGGYIIDTPGIRGFGLFNIEKEELSHFFRE 256
Query: 263 V 263
+
Sbjct: 257 I 257
>gi|417939780|ref|ZP_12583069.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK313]
gi|343389975|gb|EGV02559.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK313]
Length = 292
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPYFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGAIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 233
>gi|322377596|ref|ZP_08052086.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. M334]
gi|321281361|gb|EFX58371.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. M334]
Length = 292
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGQLDFYEQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q+FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEASTAEDLNQSFPEIATV 233
>gi|339627432|ref|YP_004719075.1| GTPase [Sulfobacillus acidophilus TPY]
gi|379008192|ref|YP_005257643.1| ribosome biogenesis GTPase RsgA [Sulfobacillus acidophilus DSM
10332]
gi|339285221|gb|AEJ39332.1| GTPase [Sulfobacillus acidophilus TPY]
gi|361054454|gb|AEW05971.1| ribosome biogenesis GTPase RsgA [Sulfobacillus acidophilus DSM
10332]
Length = 284
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 119/242 (49%), Gaps = 26/242 (10%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV LC +R +K+ RVLVGD V D G I +++ R ++L PP+ANV+ L
Sbjct: 20 GVSYLCYLRGRIKRDIGRVLVGDWVDFEPTD--AGEGWIRHIYPRKNQLLRPPMANVEGL 77
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
++FS+ QPK L + LV A+ TG+ + + K++L D +V+ + + GY
Sbjct: 78 FVVFSVSQPKGSLELLDKRLVLADLTGLAAEIIITKIDLADRDVVESLAAVYRRAGYRVW 137
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S + GL++ R+ V G SGVGKS+L++ R P
Sbjct: 138 PVSGHTGEGLEAWRTTPREGIWVFTGESGVGKSTLLH--RVLP----------------- 178
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
E++ V + ++ GRG+ TTR V L PL G +LAD+PG+ + + + F
Sbjct: 179 ----EEEVVVQGLSRIGRGQQTTRTVRLYPL-GSFWLADSPGYTALTTTVTDPARIREAF 233
Query: 261 PE 262
E
Sbjct: 234 GE 235
>gi|422853383|ref|ZP_16900047.1| GTP-binding protein [Streptococcus sanguinis SK160]
gi|325697395|gb|EGD39281.1| GTP-binding protein [Streptococcus sanguinis SK160]
Length = 292
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 114/238 (47%), Gaps = 33/238 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE L + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLGDEQSLDFYVQAYQSIGYEVLKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIA 231
>gi|421276743|ref|ZP_15727563.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SPAR10]
gi|395876024|gb|EJG87100.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SPAR10]
Length = 292
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
I + ++K++L+ D L+ ++ GY+ V SK + LL L D+ TV
Sbjct: 101 HKDIHPIVYISKMDLLEDRRELDFYEKTYRAIGYD----FVTSK---EELLPLLTDKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSSAEELNQAFPEIASV 233
>gi|417810419|ref|ZP_12457098.1| GTPase [Lactobacillus salivarius GJ-24]
gi|335349215|gb|EGM50715.1| GTPase [Lactobacillus salivarius GJ-24]
Length = 304
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 35/227 (15%)
Query: 46 VVGSIDWVDRR------GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
VVG DWVD + G I ++ R +++ PP+AN+D +++ + +P P L R
Sbjct: 48 VVG--DWVDFKIDDNGDGYILKIYPRKNQLVRPPIANIDTAIVVSACVEPDFSPNLLDRQ 105
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG-YEPLFCSVESKLG---LDSLLQ 155
LV ES + L +K +L+++E ++S + + Y + S E++ L++L+
Sbjct: 106 LVMLESNNVRPVLFFSKADLLNQEQREKFESYFNYYSKYYSCYISFENENRQNVLNNLMS 165
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
L ++ V++G +G GKS+L+N L+ P S G++S
Sbjct: 166 DLTNEIVVVMGQTGAGKSTLLNDLK--PDLS--------------------LETGKISKA 203
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RGKHTTR V+LL ++ G +ADTPGF+ LL +TK +L +P+
Sbjct: 204 LSRGKHTTRKVTLLDIN-GVMIADTPGFSSFELLNITKDTLPLMYPD 249
>gi|419782851|ref|ZP_14308648.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK610]
gi|383182777|gb|EIC75326.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK610]
Length = 292
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EDLLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GEVS GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEVSDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 233
>gi|444376995|ref|ZP_21176232.1| Ribosome small subunit-stimulated GTPase EngC [Enterovibrio sp.
AK16]
gi|443678880|gb|ELT85543.1| Ribosome small subunit-stimulated GTPase EngC [Enterovibrio sp.
AK16]
Length = 350
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 129/265 (48%), Gaps = 45/265 (16%)
Query: 14 SDCND-KTGVELLCVVRALLKKIKRRVLVGDKVV----VGSIDWVDRRGMIENVFQRSTE 68
+D D +TG+ C +R ++ + + GDKVV V ++ + G++E +R +
Sbjct: 53 ADIEDTQTGIIHRCNLRRSIESL----VTGDKVVWRPGVETLQGI--AGVVEAAHERHSV 106
Query: 69 I--------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
+ + P AN+D ++++ ++ P+L + R+L+ E G + +NK++L+
Sbjct: 107 LTRPDYYDGVKPVAANIDQVVIVSAI-LPELSTNIIDRYLIATEQVGFKPLIVINKIDLL 165
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
D E L K+ L + GYE L S +S G+D L RL D T++ VG SGVGKSSL+N
Sbjct: 166 DAEGLEMVKNILSLYAEIGYEVLMVSQKSGEGVDELKARLADGTSIFVGQSGVGKSSLVN 225
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
AL +A +GEVS SG G+HTT L GG L
Sbjct: 226 ALLPEVNAD----------------------IGEVSENSGLGQHTTTTARLYHFPDGGDL 263
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPE 262
D+PG + L + + + Q F E
Sbjct: 264 IDSPGVREFGLWHLEPEQVTQGFKE 288
>gi|323491901|ref|ZP_08097073.1| GTPase RsgA [Vibrio brasiliensis LMG 20546]
gi|323313844|gb|EGA66936.1| GTPase RsgA [Vibrio brasiliensis LMG 20546]
Length = 351
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 133/273 (48%), Gaps = 54/273 (19%)
Query: 5 VQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV----VGSIDWVDRRGMIE 60
++ +E CN + G+E L + GDKV+ + S++ ++ G++E
Sbjct: 54 IEDTETGEIQRCNLRRGIETL--------------VSGDKVIWRPGLESMEGIN--GVVE 97
Query: 61 NVFQRSTEI--------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTL 112
V R++ + L P ANVD ++++ S+ P+L + R+LV +E+ I L
Sbjct: 98 AVEPRTSVLTRPDYYDGLKPVAANVDQMVIVSSV-LPELSLNIIDRYLVASETLNIAPLL 156
Query: 113 ALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSG 169
LNK++L+++E L +KS L + GY+ LF S ++ G++ L L+D+ + VG SG
Sbjct: 157 VLNKIDLLEQEQLAEYKSWLAEYQRIGYKVLFVSKQTGEGIEELEAELKDRINIFVGQSG 216
Query: 170 VGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229
VGKSSL+NAL + + GE+S SG G+HTT L
Sbjct: 217 VGKSSLVNALMPQFNVEE----------------------GEISENSGLGQHTTTASRLY 254
Query: 230 PLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GG L D+PG + L + + + F E
Sbjct: 255 HIPTGGDLIDSPGVREFGLWHLEADEITKAFVE 287
>gi|260770592|ref|ZP_05879524.1| ribosome small subunit-stimulated GTPase EngC [Vibrio furnissii CIP
102972]
gi|260614422|gb|EEX39609.1| ribosome small subunit-stimulated GTPase EngC [Vibrio furnissii CIP
102972]
Length = 353
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 102/196 (52%), Gaps = 24/196 (12%)
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LN 126
L P ANV+ ++++ S+ P+L + R+L+ AE+ I L LNKV+L+D++
Sbjct: 115 LKPVAANVNQMVIVSSV-LPELSLNIIDRYLIAAETLAIAPLLVLNKVDLLDKDQRAQYE 173
Query: 127 TWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS 186
W S GY+ L+ S S G+++L +LRD+T + VG SGVGKSSL+NAL
Sbjct: 174 QWLSAYEKIGYDVLYVSKNSGEGIEALEAKLRDRTNIFVGQSGVGKSSLVNAL------- 226
Query: 187 DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246
++D E GE+S SG G+HTT L + GG L D+PG +
Sbjct: 227 -MPELDEMVEE------------GEISENSGLGQHTTTAARLYHIPSGGNLIDSPGVREF 273
Query: 247 SLLKVTKQSLAQTFPE 262
L + + + + F E
Sbjct: 274 GLWHLEAEDVTKAFVE 289
>gi|392988390|ref|YP_006486983.1| hypothetical protein EHR_05705 [Enterococcus hirae ATCC 9790]
gi|392335810|gb|AFM70092.1| hypothetical protein EHR_05705 [Enterococcus hirae ATCC 9790]
Length = 299
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 113/239 (47%), Gaps = 28/239 (11%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R + K LVGD+V+ S + D G + V R +++ PPVANVD +++ S+ +
Sbjct: 30 RGNFRNRKITPLVGDQVLFESENKTD--GYLLEVMPRKNQLVRPPVANVDLGVVVTSLVE 87
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESK 147
P L RFLV E I + L K +L +E+ ++ K T GY +
Sbjct: 88 PNFSYNLLDRFLVTLEYESIEPVIFLTKTDLASNEQQIDEIKQTYETIGYPVIVPKYPGD 147
Query: 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
L++ ++ TV +G SG GKS+L+N + SP +
Sbjct: 148 TA--ELIRYFPERLTVFMGQSGAGKSTLLNQI--SPDL--------------------NL 183
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTRHV LLPL G +ADTPGF+ L + L + FPE +
Sbjct: 184 ETGEISDSLGRGRHTTRHVELLPLY-DGLVADTPGFSSIDFLTIETTELPKQFPEFVSA 241
>gi|373495021|ref|ZP_09585614.1| ribosome small subunit-dependent GTPase A [Eubacterium infirmum
F0142]
gi|371966690|gb|EHO84174.1| ribosome small subunit-dependent GTPase A [Eubacterium infirmum
F0142]
Length = 289
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 119/235 (50%), Gaps = 26/235 (11%)
Query: 29 RALLKKIKRRVLVGDKV-VVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R L KK ++VGD+V ++ S D + +IE ++ R + P +ANVD ++++ ++
Sbjct: 27 RGLFKKSNNTLMVGDEVELIISKDG-ESDSLIEKIYPRKNCFVRPAIANVDQIIVVTAIS 85
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147
+P+ + + LV AE I L + K +L + +L+ S ++ Y+ + +
Sbjct: 86 EPEPSFEIIDKMLVNAEMNLIKPMLCITKPDLDQKGLLDQILS-IYKPIYKCFVVNGRTG 144
Query: 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
G+D L L+++ T ++GPSGVGKSS+ N + SP A
Sbjct: 145 EGVDDLKASLKNKKTALMGPSGVGKSSITNLI--SPCAL--------------------M 182
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++S K+ RGKHTTRH+ + GGY+ DTPGF V + L+ FPE
Sbjct: 183 ETGDISDKTRRGKHTTRHIEIFSCQ-GGYIYDTPGFTSLYTEDVEEARLSSFFPE 236
>gi|289167169|ref|YP_003445436.1| hypothetical protein smi_0296 [Streptococcus mitis B6]
gi|288906734|emb|CBJ21568.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 292
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+++ L+ +K GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRWELDFYKQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIATV 233
>gi|78188307|ref|YP_378645.1| GTPase EngC [Chlorobium chlorochromatii CaD3]
gi|78170506|gb|ABB27602.1| GTPase EngC [Chlorobium chlorochromatii CaD3]
Length = 319
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 26/203 (12%)
Query: 64 QRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
RS E + AN+D L+ + S +P L + R+LV AES +P+ L +NK +L DEE
Sbjct: 90 NRSKERVQVIAANIDQLVAVVSAFEPPLNRRLIDRYLVFAESEQLPILLVVNKCDLDDEE 149
Query: 124 VLNTWKSRL----HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+++ + H GY L+ S E+ G++ L Q L + + G SGVGKS+LIN L
Sbjct: 150 DGSSYVREMMHPYHALGYSVLYTSAENGEGVEELRQALAHKLSAFSGHSGVGKSTLINML 209
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
E R E + K+G+G HTT + +L L GG + D
Sbjct: 210 SGQ----------------------ERLRTAETNVKTGKGLHTTTNAVMLVLPDGGAIID 247
Query: 240 TPGFNQPSLLKVTKQSLAQTFPE 262
TPG + +L +T+ +L F E
Sbjct: 248 TPGLREFTLADITRDNLRFYFRE 270
>gi|418145151|ref|ZP_12781943.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13494]
gi|353804866|gb|EHD85145.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13494]
Length = 292
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 37/224 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
R VS L+GG +ADTPGF+ + L Q FPE+ VG
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATVG 234
>gi|323350564|ref|ZP_08086226.1| GTP-binding protein [Streptococcus sanguinis VMC66]
gi|322123246|gb|EFX94931.1| GTP-binding protein [Streptococcus sanguinis VMC66]
Length = 292
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 114/238 (47%), Gaps = 33/238 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLGDEQSLDVYVQAYQSIGYEVIKSTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIA 231
>gi|417915996|ref|ZP_12559589.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis bv.
2 str. SK95]
gi|342831619|gb|EGU65933.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis bv.
2 str. SK95]
Length = 292
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 110/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILTIHERKNSLVRPPIVNIDQAVVIMSAKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDSGELDFYQQTYGAIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 233
>gi|422861573|ref|ZP_16908213.1| GTP-binding protein [Streptococcus sanguinis SK330]
gi|327468441|gb|EGF13926.1| GTP-binding protein [Streptococcus sanguinis SK330]
Length = 292
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 114/238 (47%), Gaps = 33/238 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLERKRIHPIIYISKLDLLGDEQSLDVYVQAYQSIGYEVIKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIA 231
>gi|326798848|ref|YP_004316667.1| ribosome biogenesis GTPase RsgA [Sphingobacterium sp. 21]
gi|326549612|gb|ADZ77997.1| ribosome biogenesis GTPase RsgA [Sphingobacterium sp. 21]
Length = 305
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 98/196 (50%), Gaps = 25/196 (12%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKS 130
AN+D L+ ++ P + RFLV AE+ IP + NK++L EE +L ++S
Sbjct: 85 AANLDQAYLVVTLASPPTSLGFIDRFLVTAEAYDIPAGILFNKLDLFSEEGLEILADYRS 144
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GY S + +D++ L + T+I G SGVGKS+LIN R P AS
Sbjct: 145 IYEHLGYPCFEISALKGINIDAIEASLTHKVTLISGHSGVGKSTLIN--RLIPEAS---- 198
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
R G++S S +GKHTT +LPL GGY+ DTPG + ++
Sbjct: 199 ----------------LRTGKISDWSDKGKHTTTFAEMLPLIQGGYIIDTPGIQEFGVID 242
Query: 251 VTKQSLAQTFPEVCAV 266
+ +Q L+ FPE+ A+
Sbjct: 243 IEQQELSHFFPEMRAL 258
>gi|282891402|ref|ZP_06299901.1| hypothetical protein pah_c161o009 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338176455|ref|YP_004653265.1| ribosome biogenesis GTPase RsgA [Parachlamydia acanthamoebae UV-7]
gi|281498687|gb|EFB41007.1| hypothetical protein pah_c161o009 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480813|emb|CCB87411.1| putative ribosome biogenesis GTPase RsgA [Parachlamydia
acanthamoebae UV-7]
Length = 383
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 135/272 (49%), Gaps = 53/272 (19%)
Query: 23 ELLCVVRALLKK----IKRRVLVGDKVVV-------GSIDWVDRRGMI----ENVFQRST 67
E LC +R +LKK K V VGD V+ G I V+ R I +N+ +R
Sbjct: 89 EFLCTLRGVLKKERGLAKNLVTVGDFVLFEKTTPEEGLIAHVEPRKTILSRADNLSRRKE 148
Query: 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-----DE 122
+++ AN+D +L+ S+ P L+P + R+++ + G+ + +NK++L+ ++
Sbjct: 149 QLI---AANIDQVLITASVLSPPLKPSLIDRYIIATQKGGMTPIIVVNKIDLLSTSDAED 205
Query: 123 EVLNTWKSRLHTW-------GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSL 175
+L K+ T+ G + + S + G+++L +++RD+++V G SGVGKSSL
Sbjct: 206 PILEQEKALFETFLEGYRQAGLKVIPVSTVTGEGIEALKEQMRDKSSVFSGQSGVGKSSL 265
Query: 176 INALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235
INAL +GS D R+G++ ++ +G HTT L+PL GG
Sbjct: 266 INAL-------------------IGS----DLRIGKIVHRTKKGAHTTTTTHLMPLDFGG 302
Query: 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
+ DTPG + + + L F E+ VG
Sbjct: 303 WCIDTPGIKSFGVWDLDQNELESYFSEIYRVG 334
>gi|223984320|ref|ZP_03634462.1| hypothetical protein HOLDEFILI_01756 [Holdemania filiformis DSM
12042]
gi|223963677|gb|EEF68047.1| hypothetical protein HOLDEFILI_01756 [Holdemania filiformis DSM
12042]
Length = 287
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 123/253 (48%), Gaps = 44/253 (17%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWV------DRRGMIENVFQRSTEILD 71
D+ G + CV + K++R+ DK VG DWV D+ G IE + R ++
Sbjct: 17 DEEGRRVACVA---MGKVRRQ----DKPRVG--DWVEYTDFGDQTG-IERIRPRMNSLIR 66
Query: 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-EEVLNTWKS 130
PPVANVD L++ S P + R L + I L + K++LV ++ ++ W
Sbjct: 67 PPVANVDQALIVMSAKAPDFSCTLVDRILFLIVNASIKPVLCITKMDLVHPDDPVHGWIE 126
Query: 131 RLHTWGYEPLFCSVESKLGLD-SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
GYE + E LD +L LR + TV+ G SGVGKSSL+N L
Sbjct: 127 DYRQSGYEVVLSGREE---LDENLAGVLRGKVTVLTGQSGVGKSSLLNKLNPE------- 176
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
F+ Q E+S GRGKHTTRHV L ++ GG++ADTPGF+
Sbjct: 177 --------------FQLQ-TQEISKALGRGKHTTRHVELHEVA-GGWVADTPGFSSLDFS 220
Query: 250 KVTKQSLAQTFPE 262
++T LAQ+ P+
Sbjct: 221 RMTPTELAQSVPD 233
>gi|291320141|ref|YP_003515399.1| GTPase EngC [Mycoplasma agalactiae]
gi|290752470|emb|CBH40442.1| GTPase EngC [Mycoplasma agalactiae]
Length = 281
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 113/228 (49%), Gaps = 34/228 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD V ++ I +++R E + P VAN+DH++++ S+ +P+ + F + ++
Sbjct: 39 LVGDYV------EFEKEKYITKIYERQNEFIRPKVANIDHIIIVMSIHEPEFQSFLVDKY 92
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+ ES I L + K +L + +K+ + GY+ S ++ + + + +
Sbjct: 93 MAFIESANIEPVLFITKADLGTSK----YKNEYESLGYKVYEISYKTDEWVKDIAKLFTN 148
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+T V++G SGVGK++L+N + S A A +S + RG
Sbjct: 149 KTNVLMGQSGVGKTTLVNKITGSNFAVQA-----------------------ISKFANRG 185
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
KHTTR V ++ + G L DTPGF+ + +TKQ LA ++ + +G
Sbjct: 186 KHTTRIVQIVNVFDNGELIDTPGFSSLD-INLTKQQLAYSYKQFKELG 232
>gi|402833075|ref|ZP_10881697.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. CM52]
gi|402281442|gb|EJU30077.1| ribosome small subunit-dependent GTPase A [Selenomonas sp. CM52]
Length = 294
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 117/238 (49%), Gaps = 28/238 (11%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
+R LKK + V+ GD V + + G+IE +R + + P VAN+D ++L+F+
Sbjct: 27 LRGRLKKERIAVVPGDDVELELTE--GGAGVIERRCERRSLLRRPLVANIDQVVLVFAAR 84
Query: 88 QPKLEPFALTRFLVEAESTGIP-LTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSV 144
+P + P + RFLV AE + I + L +NK++L+D + + + GY S
Sbjct: 85 EPDINPVLIDRFLVLAEWSKIERIILCINKMDLLDGDGAEIPALAALYREIGYPVCLLST 144
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ G+ + + +T+V G SGVGKSSL+N L S
Sbjct: 145 ITGEGVADMQSLVEGKTSVFAGSSGVGKSSLLNCLAPGIALS------------------ 186
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K RG+HTTR LLP + GG+L DTPGF+ L ++ +L FPE
Sbjct: 187 ----TGAVSEKIKRGRHTTRTAQLLPFA-GGFLVDTPGFSATELAEIEPCALPGLFPE 239
>gi|113461242|ref|YP_719311.1| ribosome-associated GTPase [Haemophilus somnus 129PT]
gi|122945343|sp|Q0I447.1|RSGA_HAES1 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|112823285|gb|ABI25374.1| possible GTPase [Haemophilus somnus 129PT]
Length = 350
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 120/249 (48%), Gaps = 36/249 (14%)
Query: 27 VVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTEILDPP--------VAN 76
+VR L++ + V+VGD+VV G RG+IE V R +I+ P AN
Sbjct: 65 IVRCNLRRTLKSVVVGDRVVWRKGKEQLQGVRGVIEAVQPRHNQIVRPDYYDGLKSIAAN 124
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
+D ++++ ++ P L + R+LV ES+ IP + +NK +L+ E +L +
Sbjct: 125 IDRIIIVSAV-LPNLSLNIIDRYLVVCESSNIPAVIVVNKADLLSSEARTEVSLQLEIYQ 183
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GYE L S +S +D L L + T++ VG SGVGKSSLIN + +A
Sbjct: 184 KIGYETLLISAKSGENMDKLTALLSEGTSIFVGQSGVGKSSLINYILPEVNA-------- 235
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
+ G++S SG G+HTT L LS GG L D+PG + L + +
Sbjct: 236 --------------QTGKLSQVSGLGQHTTTSSRLYHLSQGGNLIDSPGIREFGLWHLDR 281
Query: 254 QSLAQTFPE 262
+ + + E
Sbjct: 282 EQITNGYRE 290
>gi|419720358|ref|ZP_14247594.1| ribosome small subunit-dependent GTPase A [Lachnoanaerobaculum
saburreum F0468]
gi|383303458|gb|EIC94907.1| ribosome small subunit-dependent GTPase A [Lachnoanaerobaculum
saburreum F0468]
Length = 305
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 25/246 (10%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
++ G C + + + I + LVGD V D D G I + R ++ P VAN+
Sbjct: 31 ERKGQIFACKAKGIFRNIGVKPLVGDNVDFEITDTKDFEGNIVKIHTRKNALIRPAVANI 90
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT-WG 136
D ++L+ +++ P + L ++L+ + GI + + NK +L ++ L ++++T G
Sbjct: 91 DKVVLVLAVESPSPAFYYLDKYLINMSNAGIKVEICWNKTDLNMDKALEY--AKIYTDAG 148
Query: 137 YEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE 196
++ + S GL +L + L+ + V+ G SGVGKSS+ N L +P A
Sbjct: 149 FKNIIASTVEDGGLKTLKETLKGEVNVLAGASGVGKSSITNIL--APKA----------- 195
Query: 197 PILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL 256
+ VS K RG+HTTRH L + ++ DTPGF K+ L
Sbjct: 196 ---------NMDTNTVSRKIERGRHTTRHSELFMIDNDTFVFDTPGFTSVESPTFDKEEL 246
Query: 257 AQTFPE 262
F E
Sbjct: 247 RFHFNE 252
>gi|315222375|ref|ZP_07864280.1| ribosome small subunit-dependent GTPase A [Streptococcus anginosus
F0211]
gi|315188536|gb|EFU22246.1| ribosome small subunit-dependent GTPase A [Streptococcus anginosus
F0211]
Length = 292
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 115/240 (47%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P P L RFLV E I + ++K++L+ D++ L+ + GY ++
Sbjct: 84 EPDFNPNLLDRFLVLLEQKAIHPIIYISKLDLLEDDKELDVFLEVYQAIGY-------DT 136
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
++ LLQ L + TV +G +GVGKS+L+N + A D+
Sbjct: 137 AKTVEELLQFLIRKKTVFMGQTGVGKSTLLNKI--------APDL--------------K 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVDNAEDLNQAFPEIAEV 233
>gi|388469377|ref|ZP_10143586.1| ribosome small subunit-dependent GTPase A [Pseudomonas synxantha
BG33R]
gi|388006074|gb|EIK67340.1| ribosome small subunit-dependent GTPase A [Pseudomonas synxantha
BG33R]
Length = 343
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 118/253 (46%), Gaps = 50/253 (19%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRR---GMIENVFQRSTEI--------LDPPV 74
C +RA L + + GDKVV W G+I RSTE+ L P
Sbjct: 73 CHLRANLPAL----VTGDKVV-----WRAGNQGIGVIVAQLPRSTELRRPDSRGQLKPVA 123
Query: 75 ANVDHLLLLFSMDQPKLEPFA--LTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWK 129
ANVD ++++F+ P EP A + R+LV AE GI L LNK +L+DE+ LN
Sbjct: 124 ANVDMIVIVFA---PLPEPHANLIDRYLVAAEHAGIRPLLLLNKFDLIDEQNAPALNALL 180
Query: 130 SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
+ T GY L S G++ L Q+L + +V VG SGVGKSSL+N+L
Sbjct: 181 AVYRTLGYPVLEVSAHHGNGMEQLQQQLDGRISVFVGQSGVGKSSLVNSLLPEV------ 234
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
D RVG +S SG+G HTT L GGG L D+PG + L
Sbjct: 235 ----------------DTRVGPLSELSGQGTHTTTTARLFHFPGGGELIDSPGIREFGLG 278
Query: 250 KVTKQSLAQTFPE 262
V++ + F E
Sbjct: 279 HVSRSDVEAGFIE 291
>gi|392963909|ref|ZP_10329330.1| ribosome small subunit-dependent GTPase A [Fibrisoma limi BUZ 3]
gi|387846804|emb|CCH51374.1| ribosome small subunit-dependent GTPase A [Fibrisoma limi BUZ 3]
Length = 308
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 115/243 (47%), Gaps = 35/243 (14%)
Query: 34 KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV----------ANVDHLLLL 83
K+ + VGD+V D + +I ++ R I+ V AN+D ++L
Sbjct: 38 KVTNPIAVGDRVQFEVEDETENTAVITDIEPRENYIIRQSVHKTAHGHILAANIDQAVML 97
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPL 140
++ P+ + RFLV AES IP TL NK +++ +E L + + + GYE L
Sbjct: 98 VTLALPRTSLGFIDRFLVTAESFRIPTTLVFNKTDILSDEGLAYQQEIMTLYESIGYECL 157
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S G+D+ Q L + T++ G SGVGKSSL+NA+ +P+
Sbjct: 158 ATSATEGQGVDAFRQLLDHKITLLSGHSGVGKSSLVNAI--APNL--------------- 200
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+ R EVST + +G HTT + L+ Y+ DTPG + L + K+ ++ F
Sbjct: 201 -----NLRTSEVSTFANKGVHTTTFAEMFELAPDTYIIDTPGIKELGLADMEKEEISHYF 255
Query: 261 PEV 263
PE+
Sbjct: 256 PEM 258
>gi|417301634|ref|ZP_12088781.1| ribosome small subunit-dependent GTPase A [Rhodopirellula baltica
WH47]
gi|327542052|gb|EGF28549.1| ribosome small subunit-dependent GTPase A [Rhodopirellula baltica
WH47]
Length = 386
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 126/264 (47%), Gaps = 45/264 (17%)
Query: 20 TGVELLCVVRALLKKI---KRRVLV-GDKV---------------VVGSIDWVD-RRGMI 59
GV C VR +LK + +R V+V GD+V G I+ V+ R GMI
Sbjct: 100 NGVLYACAVRQVLKSLSTSQRNVIVAGDRVWFRSESRDGVSLKSEADGMIERVEPRTGMI 159
Query: 60 ENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
+ +L V+N+D +L++ S +QP ++P + R ++ A I + +NKV+L
Sbjct: 160 SRTSRGRQHVL---VSNIDAMLIIASAEQPGIKPALIDRMILTAHQCQIEPIVIINKVDL 216
Query: 120 VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+D L + GY L S E+ + L L+D+ T + G SGVGKSSL+NA+
Sbjct: 217 IDLVDLQPLIGVYSSLGYRVLPTSAETGQNVAYLRALLKDRQTALAGQSGVGKSSLLNAV 276
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
+P LG +G VS+ + +G HTT L+PL+ GG + D
Sbjct: 277 ----------------QPGLGLA------IGAVSSDNDKGTHTTTASQLIPLADGGAVFD 314
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEV 263
TPG Q L ++ +A P++
Sbjct: 315 TPGIRQFQLWGISASEVAGLMPDL 338
>gi|336395249|ref|ZP_08576648.1| putative GTP-binding protein [Lactobacillus farciminis KCTC 3681]
Length = 323
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 114/251 (45%), Gaps = 31/251 (12%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+D++ V + R +K K + LVGDKV S D G I + R ++ PP+AN
Sbjct: 19 DDESNVLVRTRARGNFRKRKIKPLVGDKV---SFDSTGDLGYILEILPRENSLVRPPIAN 75
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL---H 133
VD +++ S +P L + LV E I + L K +L+ +E K+ L H
Sbjct: 76 VDQAIVVTSAAEPNFSSNLLDKILVNIEHNEIEPVIYLTKADLLSDEQYAELKTTLMGYH 135
Query: 134 TWGYEPLFCSVES--KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
+FC +S + L D+ TV G SG GKS+L+N + D
Sbjct: 136 EHADYQVFCDRDSYNDQQVSKLKATFADKVTVFTGQSGAGKSTLLNHI----------DH 185
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251
D LG E+S RGKHTTR VSL + GG +ADTPGF+ L +
Sbjct: 186 D------LGLA------TAEISQTLNRGKHTTRQVSLFDIE-GGLVADTPGFSSIDLQNI 232
Query: 252 TKQSLAQTFPE 262
+ L + FPE
Sbjct: 233 PAEELPKLFPE 243
>gi|419704952|ref|ZP_14232496.1| putative ribosome biogenesis gtpase rsga [Mycoplasma canis UF33]
gi|384392940|gb|EIE39393.1| putative ribosome biogenesis gtpase rsga [Mycoplasma canis UF33]
Length = 283
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 29/199 (14%)
Query: 46 VVGSIDWVD-RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
+VG D+V+ MI++VF+R E + P V+N+D +++ S++QPK F + +++ E
Sbjct: 41 IVG--DFVEIENNMIKSVFERKNEFIRPKVSNIDQVIIFMSIEQPKFSSFLIDKYMSIIE 98
Query: 105 STGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVI 164
+ I L + K +L E WK + GYE ++ KL D L + +++ +V
Sbjct: 99 NKSIKPILFITKSDLNPSET-EMWKKQYSNMGYE-VYSINNKKLFDDDLKKIFQNKFSVF 156
Query: 165 VGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224
+G SGVGK++ +N + + FE Q E+S GRGKHTTR
Sbjct: 157 MGQSGVGKTTTLNNITNLS--------------------FETQ---EISRALGRGKHTTR 193
Query: 225 HVSLLPLSGGGYLADTPGF 243
V ++P+ GYL DTPGF
Sbjct: 194 VVKIIPI-FDGYLIDTPGF 211
>gi|309792599|ref|ZP_07687061.1| ribosome small subunit-dependent GTPase A [Oscillochloris
trichoides DG-6]
gi|308225413|gb|EFO79179.1| ribosome small subunit-dependent GTPase A [Oscillochloris
trichoides DG6]
Length = 309
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 117/253 (46%), Gaps = 39/253 (15%)
Query: 26 CVVRALLKKIKRR---VLVGDKVVVGSIDWVDRRGMIENVFQR----------STEILDP 72
C +R LK+ ++R ++GD V + + +G +E V R + + D
Sbjct: 34 CRMRGRLKRERQRSDIAVIGDDVEISIVS--PGQGALEAVLPRRSRLARRAAGTRDAEDV 91
Query: 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL 132
VANV +LL+F+ QP P L R+LV E +G+ + KV+LV E +
Sbjct: 92 MVANVSQVLLIFACAQPAFTPRMLDRYLVICEHSGLAPLIVATKVDLVSAEAAQAMLAPY 151
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY ++ S + G+ + QRL Q +V+ G SGVGKSSL+NA+ + + +A
Sbjct: 152 ERIGYPVIYASTHTGQGITEVRQRLAGQISVVTGKSGVGKSSLLNAVVPGLNLATSA--- 208
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP--LSGGGYLADTPGFNQPSLLK 250
VS G+G+HTT L P L GGGY+ADTPG + L
Sbjct: 209 -------------------VSALLGKGRHTTTVAELHPLDLEGGGYVADTPGIREIGLWN 249
Query: 251 VTKQSLAQTFPEV 263
+ L F E+
Sbjct: 250 FAPEDLDWCFREL 262
>gi|400290874|ref|ZP_10792901.1| ribosome-associated GTPase [Streptococcus ratti FA-1 = DSM 20564]
gi|399921665|gb|EJN94482.1| ribosome-associated GTPase [Streptococcus ratti FA-1 = DSM 20564]
Length = 290
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 33/236 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K R VGD+V + + + G I + +R ++ PP+ NVD +++ S
Sbjct: 26 ARGNFRKKGHRPYVGDEVDFSAEEHSE--GYILAIHERKNSLIRPPIVNVDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L L RFL+ E I + ++K++L+ D LN K + GY+ ++
Sbjct: 84 EPDLNINLLDRFLILLEHKNIKPLIYISKLDLLKDLSCLNVIKEQYQQIGYQVIY----- 138
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
L LL L+D+ TV +G +GVGKS+L+N + A D+ +
Sbjct: 139 --HLSELLPLLKDKITVFMGQTGVGKSTLLNKI--------APDL--------------N 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S GRG+HTTR V+L + GG +ADTPGF+ + ++L FPE
Sbjct: 175 LETAEISDSLGRGRHTTRAVTLYNVHGGK-IADTPGFSSLDYEITSSEALNAAFPE 229
>gi|422877369|ref|ZP_16923839.1| GTP-binding protein [Streptococcus sanguinis SK1056]
gi|332360008|gb|EGJ37822.1| GTP-binding protein [Streptococcus sanguinis SK1056]
Length = 292
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEQSLDVYVQAYQAIGYEVVKSTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIA 231
>gi|315651139|ref|ZP_07904171.1| GTP-binding protein [Lachnoanaerobaculum saburreum DSM 3986]
gi|315486604|gb|EFU76954.1| GTP-binding protein [Lachnoanaerobaculum saburreum DSM 3986]
Length = 305
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 110/245 (44%), Gaps = 23/245 (9%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
++ G C + + + I + LVGD V D D G I + R ++ P VAN+
Sbjct: 31 ERKGQIFACKAKGIFRNIGVKPLVGDNVDFEITDTKDFEGNIVKIHTRKNALIRPAVANI 90
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D ++L+ +++ P + L ++L+ + GI + + NK +L ++ L + G+
Sbjct: 91 DKVVLVLAVESPSPAFYYLDKYLINMSNAGIKVEICWNKTDLNMDKALE-YAKIYSDAGF 149
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ + S GL +L + L+ + V+ G SGVGKSS+ N L +P A
Sbjct: 150 KNIIASTVEDGGLKTLKEALKGEVNVLAGASGVGKSSITNIL--APEA------------ 195
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
+ VS K RG+HTTRH L + ++ DTPGF K+ L
Sbjct: 196 --------NMDTNTVSKKIERGRHTTRHSELFMIDNDTFVFDTPGFTSVESPTFDKEELR 247
Query: 258 QTFPE 262
F E
Sbjct: 248 FHFNE 252
>gi|90961594|ref|YP_535510.1| GTPase [Lactobacillus salivarius UCC118]
gi|90820788|gb|ABD99427.1| GTPase [Lactobacillus salivarius UCC118]
Length = 296
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 35/227 (15%)
Query: 46 VVGSIDWVDRR------GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
VVG DWVD + G I ++ R +++ PP+AN+D +++ + +P P L R
Sbjct: 40 VVG--DWVDFKIDDNGDGYILKIYPRKNQLVRPPIANIDTAIVVSACVEPDFSPNLLDRQ 97
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG-YEPLFCSVESKLG---LDSLLQ 155
LV ES + L +K +L+++E ++S + + Y + S E++ L++L+
Sbjct: 98 LVMLESNNVRPVLFFSKADLLNQEQREKFESYFNYYSKYYSCYISFENENRQNVLNNLMC 157
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
L ++ V++G +G GKS+L+N L+ P L + G++S
Sbjct: 158 DLTNEIVVVMGQTGAGKSTLLNDLK----------------PDL------NLETGKISKA 195
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RGKHTTR V+LL ++ G +ADTPGF+ LL +TK +L +P+
Sbjct: 196 LSRGKHTTRKVTLLDIN-GVMIADTPGFSSFELLNITKDTLPLMYPD 241
>gi|385840292|ref|YP_005863616.1| GTPase [Lactobacillus salivarius CECT 5713]
gi|300214413|gb|ADJ78829.1| GTPase [Lactobacillus salivarius CECT 5713]
Length = 304
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 35/227 (15%)
Query: 46 VVGSIDWVDRR------GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
VVG DWVD + G I ++ R +++ PP+AN+D +++ + +P P L R
Sbjct: 48 VVG--DWVDFKIDDNGDGYILKIYPRKNQLVRPPIANIDTAIVVSACVEPDFSPNLLDRQ 105
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG-YEPLFCSVESKLG---LDSLLQ 155
LV ES + L +K +L+++E ++S + + Y + S E++ L++L+
Sbjct: 106 LVMLESNNVRPVLFFSKADLLNQEQREKFESYFNYYSKYYSCYISFENENRQNVLNNLMC 165
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
L ++ V++G +G GKS+L+N L+ P L + G++S
Sbjct: 166 DLTNEIVVVMGQTGAGKSTLLNDLK----------------PDL------NLETGKISKA 203
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RGKHTTR V+LL ++ G +ADTPGF+ LL +TK +L +P+
Sbjct: 204 LSRGKHTTRKVTLLDIN-GVMIADTPGFSSFELLNITKDTLPLMYPD 249
>gi|409198317|ref|ZP_11226980.1| GTPase RsgA [Marinilabilia salmonicolor JCM 21150]
Length = 308
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 113/245 (46%), Gaps = 42/245 (17%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENV-------------FQRSTEILDPPVANVDHLLLLFS 85
V VGD+V+ S+D G+IE + R T+IL AN+D +++ +
Sbjct: 43 VAVGDRVMY-SVDEATGTGVIEKIGDRRNFIVRRASNLSRQTQIL---AANIDQAIIVAT 98
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFC 142
++ P P + R L E+ IP T+ NKV+ D ++ L +K GY+ L
Sbjct: 99 INYPVTTPVFIDRLLATTEAYDIPATVIFNKVDRYDHFHKDQLADYKEIYEKIGYKVLTT 158
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S + L+ + L+ + +++ G SGVGKS+L+N + EP L K
Sbjct: 159 SAKHDEDLECVKDLLKGKVSLLAGHSGVGKSTLVNRV----------------EPALNLK 202
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S + G+HTT + PLS GGY+ DTPG L + K+ LA F E
Sbjct: 203 ------TGRISDRHHTGRHTTTFAEMHPLSFGGYIIDTPGIRGFGLFNIEKEELAHYFRE 256
Query: 263 VCAVG 267
+ V
Sbjct: 257 IFKVA 261
>gi|422847619|ref|ZP_16894302.1| GTP-binding protein [Streptococcus sanguinis SK72]
gi|325686617|gb|EGD28643.1| GTP-binding protein [Streptococcus sanguinis SK72]
Length = 292
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLERKRIHPIIYISKLDLLGDEQSLDVYVQAYQAIGYEVIKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIA 231
>gi|332663997|ref|YP_004446785.1| ribosome biogenesis GTPase RsgA [Haliscomenobacter hydrossis DSM
1100]
gi|332332811|gb|AEE49912.1| ribosome biogenesis GTPase RsgA [Haliscomenobacter hydrossis DSM
1100]
Length = 315
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 36/241 (14%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP----------VANVDHLLLLFSMDQ 88
+ VGD+V + ++ G+I+ V R ++ +N+D LL+ ++
Sbjct: 42 IAVGDEVSL-EMENETGNGLIKGVLPRKNYVVRQSPHRKHELHLLASNIDQALLVTTITN 100
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVEL---VDEEVLNTWKSRLHTWGYEPLFCSVE 145
P+L+P + RFL+ E IP + NK +L D EV + GY + S +
Sbjct: 101 PRLKPGFIDRFLLMVEPYEIPTIIVFNKADLYEDADFEVFAYMEDLYQGLGYTVILASAK 160
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G++ L L+D+ T++ G SGVGKSSL+N +++S
Sbjct: 161 TGDGVEELKALLKDKVTMLSGQSGVGKSSLLNQIQASL---------------------- 198
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA 265
D RVG++S SG+G+HTT + PL GG + DTPG + + +A F E A
Sbjct: 199 DLRVGDISEYSGKGQHTTTFAEMHPLDFGGQIIDTPGIKTLGFIHLEPNQIAHNFREFFA 258
Query: 266 V 266
+
Sbjct: 259 L 259
>gi|417847209|ref|ZP_12493178.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK1073]
gi|339457238|gb|EGP69816.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK1073]
Length = 292
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYEQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 233
>gi|422879741|ref|ZP_16926206.1| GTP-binding protein [Streptococcus sanguinis SK1059]
gi|422929586|ref|ZP_16962527.1| GTP-binding protein [Streptococcus sanguinis ATCC 29667]
gi|422932555|ref|ZP_16965486.1| GTP-binding protein [Streptococcus sanguinis SK340]
gi|332365152|gb|EGJ42915.1| GTP-binding protein [Streptococcus sanguinis SK1059]
gi|339614826|gb|EGQ19516.1| GTP-binding protein [Streptococcus sanguinis ATCC 29667]
gi|339618306|gb|EGQ22904.1| GTP-binding protein [Streptococcus sanguinis SK340]
Length = 292
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 114/238 (47%), Gaps = 33/238 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEQSLDVYVQAYQSIGYEVIKSTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLIGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIA 231
>gi|419705597|ref|ZP_14233135.1| putative ribosome biogenesis gtpase rsga [Mycoplasma canis UFG1]
gi|384394900|gb|EIE41334.1| putative ribosome biogenesis gtpase rsga [Mycoplasma canis UFG1]
Length = 283
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 29/199 (14%)
Query: 46 VVGSIDWVD-RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
+VG D+V+ MI++VF+R E + P V+N+D +++ S++QPK F + +++ E
Sbjct: 41 IVG--DFVEIENNMIKSVFERKNEFIRPKVSNIDQVIIFMSIEQPKFSSFLIDKYMSIIE 98
Query: 105 STGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVI 164
+ I L + K +L E WK + GYE ++ KL D L + +++ +V
Sbjct: 99 NKSIKPILFITKSDLNPSET-EMWKKQYSNMGYE-VYSINNKKLFDDDLKKIFQNKFSVF 156
Query: 165 VGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224
+G SGVGK++ +N + + FE Q E+S GRGKHTTR
Sbjct: 157 MGQSGVGKTTTLNNITNLS--------------------FETQ---EISRALGRGKHTTR 193
Query: 225 HVSLLPLSGGGYLADTPGF 243
V ++P+ GYL DTPGF
Sbjct: 194 VVKIIPV-FDGYLIDTPGF 211
>gi|384938286|ref|ZP_10029978.1| putative ribosome biogenesis gtpase rsga [Mycoplasma canis UF31]
gi|419706246|ref|ZP_14233777.1| putative ribosome biogenesis gtpase rsga [Mycoplasma canis UFG4]
gi|384393247|gb|EIE39698.1| putative ribosome biogenesis gtpase rsga [Mycoplasma canis UF31]
gi|384395051|gb|EIE41484.1| putative ribosome biogenesis gtpase rsga [Mycoplasma canis UFG4]
Length = 283
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 29/199 (14%)
Query: 46 VVGSIDWVD-RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
+VG D+V+ MI++VF+R E + P V+N+D +++ S++QPK F + +++ E
Sbjct: 41 IVG--DFVEIENNMIKSVFERKNEFIRPKVSNIDQVIIFMSIEQPKFSSFLIDKYMSIIE 98
Query: 105 STGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVI 164
+ I L + K +L E WK + GYE ++ KL D L + +++ +V
Sbjct: 99 NKSIKPILFITKSDLNPSET-EMWKKQYSNMGYE-VYSINNKKLFDDDLKKIFQNKFSVF 156
Query: 165 VGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224
+G SGVGK++ +N + + FE Q E+S GRGKHTTR
Sbjct: 157 MGQSGVGKTTTLNNITNLS--------------------FETQ---EISRALGRGKHTTR 193
Query: 225 HVSLLPLSGGGYLADTPGF 243
V ++P+ GYL DTPGF
Sbjct: 194 VVKIIPV-FDGYLIDTPGF 211
>gi|21674392|ref|NP_662457.1| hypothetical protein CT1574 [Chlorobium tepidum TLS]
gi|38257653|sp|Q8KC52.1|RSGA_CHLTE RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|21647573|gb|AAM72799.1| conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 311
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 94/189 (49%), Gaps = 22/189 (11%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
VAN+D L+L+ S D P + R+LV AES +PL + +NK++L +E ++
Sbjct: 96 VANIDQLVLITSFDDPPFNSRLVDRYLVFAESEKLPLLIVVNKIDLDEEGMVEEDLEVYR 155
Query: 134 TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
S E G++ L + LRD+ + G SGVGKS+LIN L
Sbjct: 156 QLDCNICLVSAEDGRGIEELRELLRDRVSAFSGHSGVGKSTLINLLVGC----------- 204
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
E+ R E S K+G+G HTT ++ L GGGY+ DTPG + +L +T+
Sbjct: 205 -----------EELRTAETSGKTGKGVHTTTSSAMFQLPGGGYVIDTPGIREFNLAGITR 253
Query: 254 QSLAQTFPE 262
++L + E
Sbjct: 254 ENLRFYYTE 262
>gi|339056132|ref|ZP_08648668.1| Ribosome small subunit-stimulated GTPase EngC [gamma
proteobacterium IMCC2047]
gi|330720660|gb|EGG98908.1| Ribosome small subunit-stimulated GTPase EngC [gamma
proteobacterium IMCC2047]
Length = 335
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDW---VDRRGMIENVFQRSTEI--------LDPPV 74
C +RA L I + GD+V+ W +D+ G+I V +R +E+ L P
Sbjct: 69 CRLRANLGSI----VTGDRVI-----WRPAIDQGGVIVAVTERDSELSRPDARGNLRPVA 119
Query: 75 ANVDHLLLLFSMDQPKLEPFALT-RFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
AN+D L+ L +P+ PF L R+LV AE+ GI + +NK +L + + W +
Sbjct: 120 ANID-LIFLVIAAEPRT-PFGLIDRYLVAAENIGIRPAILINKADLKSADAI-AWTQEIQ 176
Query: 134 TW----GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
GY + S +S+ GL+ L +R T++ VG SGVGK+SL+N L
Sbjct: 177 NIYSAIGYSIIATSTQSETGLNELKSAMRGHTSIFVGQSGVGKTSLVNRLL--------- 227
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
P +G+ RVG +S +G+G HTT L L GGG + D+PG + L
Sbjct: 228 -------PQVGA------RVGPLSESTGKGMHTTTTAQLFHLPGGGNIFDSPGIREFGLG 274
Query: 250 KVTKQSLAQTFPE 262
V +Q L F E
Sbjct: 275 HVDQQQLMDGFIE 287
>gi|295693189|ref|YP_003601799.1| ribosome biogenesis GTPase rsga [Lactobacillus crispatus ST1]
gi|295031295|emb|CBL50774.1| Ribosome biogenesis GTPase rsgA [Lactobacillus crispatus ST1]
Length = 296
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 117/241 (48%), Gaps = 36/241 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + ++ K++ VGD V + +D +GM + + R I P VANV H+LL+ S
Sbjct: 29 ARGVFRQKKQKPAVGDHVEI----QIDDKGMSYLVKILPRINRIGRPAVANVSHVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFL + +T+ L+K +L+ E LNT K L + GY P+F
Sbjct: 85 AVEPDFSVELLDRFLTFFSWQKVGVTIYLSKADLLSEAKLNTIKQALAYYQKIGY-PVFT 143
Query: 143 SV-ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
E ++ + +++ ++Q + G SG GKS+L+N L+ DA
Sbjct: 144 DYHEMQIQIPKMIE--KNQIWTLAGQSGAGKSTLLNHLK-----KDA------------- 183
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+Q G +ST RGKHTTR V L L G G+LADTPGF+ L + L F
Sbjct: 184 ----NQATGAISTSLNRGKHTTRKVELFKL-GAGFLADTPGFSSIDLTPIKLNELCNYFV 238
Query: 262 E 262
E
Sbjct: 239 E 239
>gi|421489471|ref|ZP_15936851.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK304]
gi|400365708|gb|EJP18758.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK304]
Length = 292
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGKLDFYQQTYGAIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSSAEELNQAFPEIASV 233
>gi|189500979|ref|YP_001960449.1| ribosome small subunit-dependent GTPase A [Chlorobium
phaeobacteroides BS1]
gi|189496420|gb|ACE04968.1| ribosome small subunit-dependent GTPase A [Chlorobium
phaeobacteroides BS1]
Length = 319
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 29/211 (13%)
Query: 64 QRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
RS E + AN+D L ++ S +QP L + R+LV AES +P+ + +NK++L + +
Sbjct: 90 NRSKEKIQVIAANIDQLAIVVSAEQPPLNRRLIDRYLVFAESEKMPVIIIVNKMDLAEPD 149
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
++ GY + S E+ GL L L + TV+ G SGVGKS++IN L
Sbjct: 150 SVSECMRPYDRLGYTVCYVSAENGKGLAGLRDELDGKVTVLSGHSGVGKSTVINRLVGE- 208
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
E + E+S S +G HTT + +L L GY+ DTPG
Sbjct: 209 ---------------------EKLKTAEISAWSLKGVHTTTNAVMLGLPCSGYVIDTPGL 247
Query: 244 NQPSLLKVTKQSLAQTFPEVCAVGLLYMIHM 274
+ SL +TK +L FPE +++HM
Sbjct: 248 REFSLSDITKDNLRFYFPE-------FLVHM 271
>gi|332880824|ref|ZP_08448495.1| ribosome small subunit-dependent GTPase A [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|357046980|ref|ZP_09108594.1| ribosome small subunit-dependent GTPase A [Paraprevotella clara YIT
11840]
gi|332681207|gb|EGJ54133.1| ribosome small subunit-dependent GTPase A [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|355530075|gb|EHG99493.1| ribosome small subunit-dependent GTPase A [Paraprevotella clara YIT
11840]
Length = 310
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 90/193 (46%), Gaps = 25/193 (12%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
ANVD L+ ++ P+ + RFL AE+ +P++L NK + D + L + +H
Sbjct: 85 AANVDQAFLIVTVSHPETSTTFIDRFLASAEAYRVPVSLVFNKTDCYDADDLRYMEGMMH 144
Query: 134 ---TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
T GY CS LG+D+L L+ +TT++ G SGVGKS+L+N L
Sbjct: 145 LYTTIGYPCHACSALQSLGIDALRDSLKGRTTLLSGHSGVGKSTLLNTLI---------- 194
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
P L + R E+S G HTT + L GGGY+ DTPG
Sbjct: 195 ------PDL------NVRTAEISAAHDTGMHTTTFSEMFSLPGGGYVIDTPGIKGFGTFD 242
Query: 251 VTKQSLAQTFPEV 263
K+ +A F E+
Sbjct: 243 FEKEEMAHYFREI 255
>gi|401682633|ref|ZP_10814524.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. AS14]
gi|400184284|gb|EJO18529.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. AS14]
Length = 292
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEKSLDVYVQAYQAIGYEVIKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIA 231
>gi|418966520|ref|ZP_13518251.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK616]
gi|383347098|gb|EID25100.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK616]
Length = 292
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 117/240 (48%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K VGD V + + + G I + +R ++ PP+ N+D +++ S+
Sbjct: 26 ARGNFRKKGHTPYVGDLVDFSAEE--NSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L+ D L+ ++ GY+ V S
Sbjct: 84 EPDFNSNLLDRFLVLLEHKGIHPIIYISKMDLLEDRGELDFYEQTYGDIGYD----FVTS 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
K + LL L + TV +G +GVGKS+L+N + A D+ +
Sbjct: 140 K---EELLPLLTGKVTVFMGQTGVGKSTLLNKI--------APDL--------------N 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L QTFPE+ V
Sbjct: 175 LETGEISDSLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTTEDLNQTFPEIATV 233
>gi|228477337|ref|ZP_04061975.1| ribosome small subunit-dependent GTPase A [Streptococcus salivarius
SK126]
gi|228251356|gb|EEK10527.1| ribosome small subunit-dependent GTPase A [Streptococcus salivarius
SK126]
Length = 290
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 114/244 (46%), Gaps = 33/244 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV D+ + + + G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKNIKPVIYISKMDLVEDDSEMKAIQKQYQKIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N + H
Sbjct: 137 IFS-------LEDLLPLLTDKITVFMGQTGVGKSTLLNRIAPQLHLE------------- 176
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 177 ---------TGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVDNAEDLSEA 226
Query: 260 FPEV 263
FPE+
Sbjct: 227 FPEI 230
>gi|392428036|ref|YP_006469047.1| ribosome-associated GTPase [Streptococcus intermedius JTH08]
gi|419776983|ref|ZP_14302901.1| ribosome small subunit-dependent GTPase A [Streptococcus
intermedius SK54]
gi|383845194|gb|EID82598.1| ribosome small subunit-dependent GTPase A [Streptococcus
intermedius SK54]
gi|391757182|dbj|BAM22799.1| ribosome-associated GTPase [Streptococcus intermedius JTH08]
Length = 292
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 116/240 (48%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERQNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P P L RFLV E I + ++K++L+ D+ L+ + GY+ + +VE
Sbjct: 84 EPDFNPNLLDRFLVLLEQKAIRPIIYISKLDLLRDDAELDVFLKAYQAIGYD-IAKTVE- 141
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LLQ L + TV +G +GVGKS+L+N + A D+
Sbjct: 142 -----ELLQFLIRKKTVFMGQTGVGKSTLLNKI--------APDL--------------K 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ + L + FPE+ AV
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVDNAEELNRAFPEIAAV 233
>gi|116628486|ref|YP_821105.1| ribosome-associated GTPase [Streptococcus thermophilus LMD-9]
gi|116101763|gb|ABJ66909.1| Predicted GTPase [Streptococcus thermophilus LMD-9]
Length = 290
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 33/244 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV D+ + + +++ G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKHIKPVIYISKMDLVEDDSEMKSIQTQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N R +P
Sbjct: 137 VFT-------LEELLPLLADKVTVFMGQTGVGKSTLLN--RIAPQL-------------- 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+ GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 174 ------NLETGEISDSLGRGRHTTRSVSLYDVHGGK-IADTPGFSSLDYEVANAEDLSEA 226
Query: 260 FPEV 263
FPE+
Sbjct: 227 FPEI 230
>gi|241889913|ref|ZP_04777211.1| ribosome small subunit-dependent GTPase A [Gemella haemolysans ATCC
10379]
gi|241863535|gb|EER67919.1| ribosome small subunit-dependent GTPase A [Gemella haemolysans ATCC
10379]
Length = 293
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 115/248 (46%), Gaps = 31/248 (12%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D +G + C R + LVGD V + D + G + + +R E+L P VAN+
Sbjct: 18 DCSGELITCRARGNFRNENITPLVGDDVKIQLSD--NNTGYVVEILERKNELLRPKVANI 75
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-- 135
D+ +++ S+ P+ L + + E++ + + + K++L+ +E LN K ++ +
Sbjct: 76 DYSIIVVSVKDPEFSSKLLNKMICLNENSNVDIIIVFTKLDLLSDEELNKMKEIMNYYYE 135
Query: 136 -GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY+ S E ++ L Q + ++ I G SG GKS+ IN L + H
Sbjct: 136 IGYQVFTNSDED---IEKLKQVISEKYVAISGQSGAGKSTFINKL--AEHL--------- 181
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
D GE+S GRG+HTTRH + Y+ADTPGF+ + + K+
Sbjct: 182 -----------DIETGEISKHLGRGRHTTRHTEFYQID-DFYIADTPGFSSLDITFIEKE 229
Query: 255 SLAQTFPE 262
L F E
Sbjct: 230 DLQYLFRE 237
>gi|336418049|ref|ZP_08598328.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
11_3_2]
gi|336160508|gb|EGN63553.1| ribosome small subunit-dependent GTPase A [Fusobacterium sp.
11_3_2]
Length = 297
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 122/257 (47%), Gaps = 34/257 (13%)
Query: 26 CVVRALLKKI--KRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
C +R +LKK K +VGD+V + I +F+R ++ P VANVD+L +
Sbjct: 29 CKLRGILKKTNNKYNCVVGDRV------EISEDNTIVEIFKRDNMLIRPIVANVDYLAIQ 82
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRLHTWGYEPL 140
F+ P ++ + L+ A + + +NK++ + EE L K S L
Sbjct: 83 FAAKHPNIDFERINLLLLTAFYYKVKPIVIVNKIDYLTEEELCELKEKLSFLEKISVPMF 142
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S +GL+ + L+D+ TVI GPSGVGKSS IN L+S E L
Sbjct: 143 LISCHQNIGLEKVEDFLKDKITVIGGPSGVGKSSFINFLQS--------------EKTL- 187
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV-TKQSLAQT 259
+ G++S K RGKHTTR +++ + GGY+ DTPGF+ + + ++ L
Sbjct: 188 -------KTGKISEKLQRGKHTTRDSNMIKMKVGGYIIDTPGFSSIEVPNIENREELISL 240
Query: 260 FPEVCAVGLLYMIHMLH 276
FPE + ++ H
Sbjct: 241 FPEFSNIESCKFLNCSH 257
>gi|325281141|ref|YP_004253683.1| ribosome biogenesis GTPase RsgA [Odoribacter splanchnicus DSM
20712]
gi|324312950|gb|ADY33503.1| ribosome biogenesis GTPase RsgA [Odoribacter splanchnicus DSM
20712]
Length = 305
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 110/238 (46%), Gaps = 38/238 (15%)
Query: 41 VGDKVVV--GSIDWV-----DRRGMIENVFQRSTEILDPP---VANVDHLLLLFSMDQPK 90
VGD+V + GS +V RR I +RST + ANVD LL+ +++ P
Sbjct: 45 VGDEVELEEGSEGYVITAIGKRRNYI---IRRSTNLSKESHIIAANVDLALLVVTVNHPV 101
Query: 91 LEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFCSVESK 147
+ RFLV AE+ IP L NK +L D E +L GY S E+
Sbjct: 102 TSTVFIDRFLVTAEAYNIPAVLVFNKTDLYDAEDQAMLGGLTVIYRKIGYPCYAVSAETG 161
Query: 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207
+D + L+D+ TV+ G SGVGKSSL+N + EP L D
Sbjct: 162 EHVDEIRSLLKDKITVLSGLSGVGKSSLVNCI----------------EPGL------DL 199
Query: 208 RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA 265
+ +S GKHTT + PL GG++ DTPG ++ + K+ L+ FPE+ A
Sbjct: 200 KTAGISDAHDSGKHTTTFAEMFPLKQGGFIIDTPGLRSFGIIDLKKEELSHFFPEIFA 257
>gi|386345506|ref|YP_006041670.1| hypothetical protein STH8232_2067 [Streptococcus thermophilus JIM
8232]
gi|339278967|emb|CCC20715.1| hypothetical protein STH8232_2067 [Streptococcus thermophilus JIM
8232]
Length = 290
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 33/244 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV D+ + + +++ G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKHIKPVIYISKMDLVEDDSEMKSIQTQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N R +P
Sbjct: 137 VFT-------LEELLPLLADKVTVFMGQTGVGKSTLLN--RIAPQL-------------- 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+ GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 174 ------NLETGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVANAEDLSEA 226
Query: 260 FPEV 263
FPE+
Sbjct: 227 FPEI 230
>gi|312134892|ref|YP_004002230.1| ribosome small subunit-dependent gtpase a [Caldicellulosiruptor
owensensis OL]
gi|311774943|gb|ADQ04430.1| ribosome small subunit-dependent GTPase A [Caldicellulosiruptor
owensensis OL]
Length = 290
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 26/245 (10%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D G C R + +K LVGD VV+ ++ +I+ + R +++ PP+ANV
Sbjct: 19 DHEGNIYECRARGVFRKDDIAPLVGDNVVI--VEKSKGAYVIDKILPRKNQLVRPPIANV 76
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D +++ + P++ AL + LV + + +NKV+L + KS+ +
Sbjct: 77 DIAIVVVASVSPEVSLIALDKLLVNVLKEKVKPVICVNKVDLDGGKTFEMIKSQYSVF-- 134
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ + S ++ G+ L ++ + +V G SGVGKSS++N L
Sbjct: 135 DVIGVSAKTGEGISQLKDYIQGRISVFAGQSGVGKSSILNCL------------------ 176
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
I G+ +VGE+S K RG+HTTR V LL + Y+ADTPGF+ ++ + + L
Sbjct: 177 IPGANL----KVGEISKKIERGRHTTRVVELLRVDEDTYIADTPGFSSIEIIGLLRNELK 232
Query: 258 QTFPE 262
+PE
Sbjct: 233 YYYPE 237
>gi|301299289|ref|ZP_07205575.1| ribosome small subunit-dependent GTPase A [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300853133|gb|EFK80731.1| ribosome small subunit-dependent GTPase A [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 304
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 33/222 (14%)
Query: 51 DWVDRR------GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD + G I ++ R +++ PP+AN+D +++ + +P P L R LV E
Sbjct: 51 DWVDFKIDDNGDGYILKIYPRKNQLVRPPIANIDTAIVVSACVEPDFSPNLLDRQLVMLE 110
Query: 105 STGIPLTLALNKVELVDEEVLNTWKSRLHTWG-YEPLFCSVESKLG---LDSLLQRLRDQ 160
S + L +K +L+++E ++S + + Y + S E++ L++L+ L ++
Sbjct: 111 SNNVRPVLFFSKADLLNQEQREKFESYFNYYSKYYSCYISFENENRQNVLNNLMCDLTNE 170
Query: 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220
V++G +G GKS+L+N L+ P L + G++S RGK
Sbjct: 171 IVVVMGQTGAGKSTLLNDLK----------------PDL------NLETGKISKALSRGK 208
Query: 221 HTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
HTTR V+LL ++ G +ADTPGF+ LL +TK +L +P+
Sbjct: 209 HTTRKVTLLDIN-GVMIADTPGFSSFELLNITKDTLPLMYPD 249
>gi|445382868|ref|ZP_21427336.1| GTPase RsgA [Streptococcus thermophilus MTCC 5460]
gi|445395622|ref|ZP_21429067.1| GTPase RsgA [Streptococcus thermophilus MTCC 5461]
gi|444748393|gb|ELW73363.1| GTPase RsgA [Streptococcus thermophilus MTCC 5461]
gi|444748511|gb|ELW73476.1| GTPase RsgA [Streptococcus thermophilus MTCC 5460]
Length = 290
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 33/244 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV D+ + + +++ G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKHIKPVIYISKMDLVEDDSEMKSIQTQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N R +P
Sbjct: 137 VFT-------LEELLPLLADKVTVFMGQTGVGKSTLLN--RIAPQL-------------- 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+ GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 174 ------NLETGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVANAEDLSEA 226
Query: 260 FPEV 263
FPE+
Sbjct: 227 FPEI 230
>gi|430835064|ref|ZP_19453063.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0679]
gi|430484732|gb|ELA61694.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0679]
Length = 299
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 116/236 (49%), Gaps = 30/236 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R + K LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +
Sbjct: 30 RGNFRNRKITPLVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVE 87
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESK 147
P L RFLV E I + L K +L D+ E + K GY P+ V +
Sbjct: 88 PAFSYNLLDRFLVTLEYESIEPIIFLTKTDLSDDPEKIEEIKQTYTKIGY-PVI--VPNH 144
Query: 148 LG-LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
G L++ ++ +V +G SGVGKS+L+N + SP + A
Sbjct: 145 TGDTTELIRYFPERLSVFMGQSGVGKSTLLNQI--SPELNLAT----------------- 185
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S GRG+HTTRHV L+P+ GG +ADTPGF+ L + L + FPE
Sbjct: 186 ---GEISDALGRGRHTTRHVELIPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPE 237
>gi|399909445|ref|ZP_10777997.1| GTPase RsgA [Halomonas sp. KM-1]
Length = 344
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 130/267 (48%), Gaps = 43/267 (16%)
Query: 12 RTSDCN-DKTGVELLCVVRALLKKIKRRVLVGDKVV-------VGSIDW--VDRRGMIEN 61
RT D D G + C +RA L+ + + GD+V+ G+I V R +N
Sbjct: 55 RTLDVQEDGDGPTVRCHLRANLEGL----VTGDRVIWRAAEDAEGNITEGVVVARSERQN 110
Query: 62 VFQR--STEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
V +R + L P AN+D +L++F+ +P P + R+LV AE+TGI L LNK++L
Sbjct: 111 VLERPDARGQLKPVAANIDQILIVFAA-EPAPHPNLIDRYLVAAEATGISPVLVLNKIDL 169
Query: 120 VDEE--VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
+ E+ L +R GY + + GLD+L RL ++T+V VG SGVGKSSLI+
Sbjct: 170 LPEDGGELRALLTRYEALGYPVVSTTTARAEGLDALHARLAERTSVFVGQSGVGKSSLID 229
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL--LPLSGGG 235
L E R+G +S S +G HTT L LP +
Sbjct: 230 RLLPD----------------------ESLRIGALSKDSRKGTHTTTTARLYRLPTADDA 267
Query: 236 YLADTPGFNQPSLLKVTKQSLAQTFPE 262
L D+PG + L+ + +Q +A+ F E
Sbjct: 268 ELIDSPGIREFGLVHLDEQQVAEGFIE 294
>gi|422822517|ref|ZP_16870710.1| GTP-binding protein [Streptococcus sanguinis SK353]
gi|324989787|gb|EGC21730.1| GTP-binding protein [Streptococcus sanguinis SK353]
Length = 292
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ D++ L+ + GYE L + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLGDKQSLDVYVQPYQAIGYEVLKATEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIA 231
>gi|310828890|ref|YP_003961247.1| ribosome small subunit-dependent GTPase A [Eubacterium limosum
KIST612]
gi|308740624|gb|ADO38284.1| ribosome small subunit-dependent GTPase A [Eubacterium limosum
KIST612]
Length = 303
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 113/240 (47%), Gaps = 25/240 (10%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
L C R + + K + +VGD V V D + I+ + R E + PPV+NVD L++
Sbjct: 36 LECKARGVFRHQKIKPMVGDFVEVVENDSDEL--AIDKIKPRKNEFVRPPVSNVDVALIV 93
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
F+ + P L + L+ +E + + + K +LV+ + L Y+
Sbjct: 94 FAGENPSPNLLLLDKLLIASEMKAVEPVICITKTDLVEADELQRIMDIYAKTPYKCFAFD 153
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ L + + + +T + GPSGVGKS+L N L +A ++
Sbjct: 154 QTDNIALQKIEREIAGKTAFLAGPSGVGKSTLANRL------CEAGAME----------- 196
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL-LKVTKQSLAQTFPE 262
GE+S K RGKHTTRHV LL L GGYL DTPGF+ L ++ K+ L FPE
Sbjct: 197 -----TGELSQKLNRGKHTTRHVELLDLKVGGYLLDTPGFSSLKLDSEIEKEDLRFYFPE 251
>gi|229588066|ref|YP_002870185.1| ribosome-associated GTPase [Pseudomonas fluorescens SBW25]
gi|312958643|ref|ZP_07773163.1| ribosome biogenesis GTPase [Pseudomonas fluorescens WH6]
gi|408484150|ref|ZP_11190369.1| GTPase RsgA [Pseudomonas sp. R81]
gi|259495481|sp|C3KDV4.1|RSGA_PSEFS RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|229359932|emb|CAY46786.1| putative GTP-ase [Pseudomonas fluorescens SBW25]
gi|311287186|gb|EFQ65747.1| ribosome biogenesis GTPase [Pseudomonas fluorescens WH6]
Length = 343
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 118/253 (46%), Gaps = 50/253 (19%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRR---GMIENVFQRSTEI--------LDPPV 74
C +RA L + + GDKVV W G+I R+TE+ L P
Sbjct: 73 CHLRANLPAL----VTGDKVV-----WRAGNQGIGVIVAQLPRTTELRRPDSRGQLKPVA 123
Query: 75 ANVDHLLLLFSMDQPKLEPFA--LTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWK 129
ANVD ++++F+ P EP A + R+LV AE GI L LNK +L+DE+ LN
Sbjct: 124 ANVDMIVIVFA---PLPEPHANLIDRYLVAAEHAGIRPLLLLNKFDLIDEQNAPALNALL 180
Query: 130 SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
+ T GY L S G++ L Q+L + +V VG SGVGKSSL+N+L
Sbjct: 181 AVYRTLGYPVLEVSAHHGNGMEQLQQQLDGRISVFVGQSGVGKSSLVNSLLPEV------ 234
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
D RVG +S SG+G HTT L GGG L D+PG + L
Sbjct: 235 ----------------DTRVGPLSELSGQGTHTTTTARLFHFPGGGELIDSPGIREFGLG 278
Query: 250 KVTKQSLAQTFPE 262
V++ + F E
Sbjct: 279 HVSRSDVEAGFIE 291
>gi|55821770|ref|YP_140212.1| ribosome-associated GTPase [Streptococcus thermophilus LMG 18311]
gi|55823688|ref|YP_142129.1| ribosome-associated GTPase [Streptococcus thermophilus CNRZ1066]
gi|55737755|gb|AAV61397.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
gi|55739673|gb|AAV63314.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
Length = 290
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 33/244 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVDFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV D+ + + +++ G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKHIKPVIYISKMDLVEDDSEMKSIQTQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N R +P
Sbjct: 137 VFT-------LEELLPLLADKVTVFMGQTGVGKSTLLN--RIAPQL-------------- 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+ GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 174 ------NLETGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVANAEDLSEA 226
Query: 260 FPEV 263
FPE+
Sbjct: 227 FPEI 230
>gi|417788137|ref|ZP_12435820.1| ribosome small subunit-stimulated GTPase EngC [Lactobacillus
salivarius NIAS840]
gi|334308314|gb|EGL99300.1| ribosome small subunit-stimulated GTPase EngC [Lactobacillus
salivarius NIAS840]
Length = 296
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 35/227 (15%)
Query: 46 VVGSIDWVDRR------GMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
VVG DWV+ + G I ++ R +++ PP+AN+D +++ + +P P L R
Sbjct: 40 VVG--DWVNFKIDDNGDGYILKIYPRKNQLVRPPIANIDTAIVVSACVEPDFSPNLLDRQ 97
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG-YEPLFCSVESKLG---LDSLLQ 155
LV ES + L +K +L+++E ++S + + Y + S E++ L++L+
Sbjct: 98 LVMLESNNVRPVLFFSKADLLNQEQREKFESYFNYYSKYYSCYISFENENRQNVLNNLMS 157
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
L ++ V++G +G GKS+L+N L+ P S G++S
Sbjct: 158 DLTNEIVVVMGQTGAGKSTLLNDLK--PDLS--------------------LETGKISKA 195
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RGKHTTR V+LL ++ G +ADTPGF+ LL +TK +L +P+
Sbjct: 196 LSRGKHTTRKVTLLDIN-GVMIADTPGFSSFELLNITKDTLPLMYPD 241
>gi|307128182|ref|YP_003880213.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
670-6B]
gi|418133428|ref|ZP_12770297.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11304]
gi|306485244|gb|ADM92113.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
670-6B]
gi|353804369|gb|EHD84652.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11304]
Length = 292
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 110/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDGGELDFYQQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIATV 233
>gi|333907807|ref|YP_004481393.1| ribosome biogenesis GTPase RsgA [Marinomonas posidonica
IVIA-Po-181]
gi|333477813|gb|AEF54474.1| ribosome biogenesis GTPase RsgA [Marinomonas posidonica
IVIA-Po-181]
Length = 344
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 124/256 (48%), Gaps = 46/256 (17%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRR---GMIENVFQRSTEI-------- 69
G+ C +RA L ++ + GDKV+ W ++ G++ +R T +
Sbjct: 68 GISTRCNLRANLGQL----VTGDKVI-----WRPKQQAGGIVVATTERQTSLSRPDMHGR 118
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
L P AN+DH++++ + + P + R+LV AE+ GIP + LNK +L+++ +
Sbjct: 119 LKPVAANIDHIVIVIAAE-PVAHANLIDRYLVAAETVGIPPVILLNKCDLINDSNRDQLN 177
Query: 130 SRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS 186
+ L T+ Y + S + + G++SL Q L D+T+V VG SGVGKSSLI L
Sbjct: 178 ALLDTYEQLKYRIIRTSTKDQAGMESLYQFLGDKTSVFVGQSGVGKSSLIGTL------- 230
Query: 187 DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246
D+D VGE+S K +G HTT L + GG L D+PG +
Sbjct: 231 -LPDIDI--------------SVGELSQKRKKGTHTTTTARLFHMPKGGDLIDSPGIREF 275
Query: 247 SLLKVTKQSLAQTFPE 262
L +++ L F E
Sbjct: 276 GLWHISEDELLNGFIE 291
>gi|419704304|ref|ZP_14231854.1| putative ribosome biogenesis gtpase rsga [Mycoplasma canis PG 14]
gi|384393092|gb|EIE39544.1| putative ribosome biogenesis gtpase rsga [Mycoplasma canis PG 14]
Length = 283
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 29/199 (14%)
Query: 46 VVGSIDWVD-RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
+VG D+V+ + MI++VF+R E + P V+N+D +++ S++QPK F + +++ E
Sbjct: 41 IVG--DFVEIQNNMIKSVFERKNEFIRPKVSNIDQVIIFMSIEQPKFSSFLIDKYMSIIE 98
Query: 105 STGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVI 164
I L + K +L E WK + GYE ++ KL D L + +++ +V
Sbjct: 99 KKSIKPILFITKSDLNPSET-EMWKKQYSNMGYE-VYSINNKKLFDDDLKKIFQNKFSVF 156
Query: 165 VGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224
+G SGVGK++ +N + + + E+S GRGKHTTR
Sbjct: 157 MGQSGVGKTTTLNNITNLSF-----------------------KTQEISKALGRGKHTTR 193
Query: 225 HVSLLPLSGGGYLADTPGF 243
V ++P+ GYL DTPGF
Sbjct: 194 VVKIIPV-FDGYLIDTPGF 211
>gi|421292855|ref|ZP_15743587.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA56348]
gi|395891416|gb|EJH02414.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA56348]
Length = 292
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKIDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|419767041|ref|ZP_14293210.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK579]
gi|383353508|gb|EID31119.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK579]
Length = 292
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYEQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNHAFPEIASV 233
>gi|312873203|ref|ZP_07733259.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
2052A-d]
gi|311091214|gb|EFQ49602.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
2052A-d]
Length = 297
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 42/244 (17%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFSM 86
R + + +K++ LVGD+VVV D +G+ + V R+ E+ P +AN +++LL+ S
Sbjct: 31 RGIFRNLKQKPLVGDRVVVQP----DDKGINYLVAVADRTCELQRPALANAEYVLLVISA 86
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPL--F 141
QP L R+LV + + + L+K +L+ + L KS+L+ + GY+ +
Sbjct: 87 TQPDFSVDLLDRYLVFFAWKKVKVVIFLSKTDLISSDELLKIKSKLNEYQKIGYQYFVDY 146
Query: 142 CSVESKL--GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+E L +DS D+ V+ G SGVGKS+L+N L+ D+
Sbjct: 147 QDLEQYLQNNIDS------DEIWVLAGQSGVGKSTLLNRLKK--------DI-------- 184
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
Q+ E+S RGKHTTR +SL G GY+ADTPGF+ L + L
Sbjct: 185 ------SQKTAEISFALNRGKHTTRQISLFEY-GKGYIADTPGFSSIDLSNIKLDELKDL 237
Query: 260 FPEV 263
F E+
Sbjct: 238 FYEI 241
>gi|259501635|ref|ZP_05744537.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners DSM
13335]
gi|302191158|ref|ZP_07267412.1| GTPase [Lactobacillus iners AB-1]
gi|309804756|ref|ZP_07698820.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners
LactinV 09V1-c]
gi|309807740|ref|ZP_07701674.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners
LactinV 01V1-a]
gi|312871583|ref|ZP_07731675.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
3008A-a]
gi|312874666|ref|ZP_07734690.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
2053A-b]
gi|315653698|ref|ZP_07906618.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners ATCC
55195]
gi|325912979|ref|ZP_08175352.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners UPII
60-B]
gi|329921049|ref|ZP_08277572.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners SPIN
1401G]
gi|259166920|gb|EEW51415.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners DSM
13335]
gi|308165866|gb|EFO68085.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners
LactinV 09V1-c]
gi|308169000|gb|EFO71084.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners
LactinV 01V1-a]
gi|311089896|gb|EFQ48316.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
2053A-b]
gi|311092808|gb|EFQ51160.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
3008A-a]
gi|315489060|gb|EFU78702.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners ATCC
55195]
gi|325477659|gb|EGC80798.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners UPII
60-B]
gi|328934956|gb|EGG31445.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners SPIN
1401G]
Length = 297
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 42/244 (17%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFSM 86
R + + +K++ LVGD+VVV D +G+ + V R+ E+ P +AN +++LL+ S
Sbjct: 31 RGIFRNLKQKPLVGDRVVVQP----DDKGINYLVAVADRTCELQRPALANAEYVLLVMSA 86
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPL--F 141
QP L R+LV + + + L+K +L+ + L KS+L+ + GY+ +
Sbjct: 87 TQPDFSVDLLDRYLVFFAWKKVKVVIFLSKTDLISSDELLKIKSKLNEYQKIGYQYFVDY 146
Query: 142 CSVESKL--GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+E L +DS D+ V+ G SGVGKS+L+N L+ D+
Sbjct: 147 QDLEQYLQNNIDS------DEIWVLAGQSGVGKSTLLNRLKK--------DI-------- 184
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
Q+ E+S RGKHTTR +SL G GY+ADTPGF+ L + L
Sbjct: 185 ------SQKTAEISFALNRGKHTTRQISLFEY-GKGYIADTPGFSSIDLSNIKLDELKDL 237
Query: 260 FPEV 263
F E+
Sbjct: 238 FYEI 241
>gi|325911762|ref|ZP_08174169.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners UPII
143-D]
gi|325476528|gb|EGC79687.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners UPII
143-D]
Length = 297
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 42/244 (17%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFSM 86
R + + +K++ LVGD+VVV D +G+ + V R+ E+ P +AN +++LL+ S
Sbjct: 31 RGIFRNLKQKPLVGDRVVVQP----DDKGINYLVAVADRTCELQRPALANAEYVLLVMSA 86
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPL--F 141
QP L R+LV + + + L+K +L+ + L KS+L+ + GY+ +
Sbjct: 87 TQPDFSVDLLDRYLVFFAWKKVKVVIFLSKTDLISSDELLKIKSKLNEYQKIGYQYFVDY 146
Query: 142 CSVESKL--GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+E L +DS D+ V+ G SGVGKS+L+N L+ D+
Sbjct: 147 QDLEQYLQNNIDS------DEIWVLAGQSGVGKSTLLNRLKK--------DI-------- 184
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
Q+ E+S RGKHTTR +SL G GY+ADTPGF+ L + L
Sbjct: 185 ------SQKTAEISFALNRGKHTTRQISLFEY-GKGYIADTPGFSSIDLSNIKLDELKDL 237
Query: 260 FPEV 263
F E+
Sbjct: 238 FYEI 241
>gi|148377479|ref|YP_001256355.1| GTPase EngC [Mycoplasma agalactiae PG2]
gi|254766816|sp|A5IY02.1|RSGA_MYCAP RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|148291525|emb|CAL58911.1| GTPase EngC [Mycoplasma agalactiae PG2]
Length = 281
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 113/228 (49%), Gaps = 34/228 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD V ++ I +++R E + P VAN+DH++++ S+ +P+ + F + ++
Sbjct: 39 LVGDYV------EFEKEKYITKIYERQNEFIRPKVANIDHIIIVMSIHEPEFQSFLVDKY 92
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
+ ES I L K +L + +K+ + GY+ S ++ + ++ + +
Sbjct: 93 MAFIESANIEPVLFNTKADLGTSK----YKNEYESLGYKVYEISYKTDEWVKNIAKLFTN 148
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+T V++G SGVGK++L+N + S A A +S + RG
Sbjct: 149 KTNVLMGQSGVGKTTLVNKITGSNFAVQA-----------------------ISKFANRG 185
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267
KHTTR V ++ + G L DTPGF+ + +TKQ LA ++ + +G
Sbjct: 186 KHTTRIVQIVNVFDNGELIDTPGFSSLD-INLTKQQLAYSYKQFKELG 232
>gi|329961846|ref|ZP_08299860.1| ribosome small subunit-dependent GTPase A [Bacteroides fluxus YIT
12057]
gi|328531286|gb|EGF58130.1| ribosome small subunit-dependent GTPase A [Bacteroides fluxus YIT
12057]
Length = 310
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 25/193 (12%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
AN+D +L+ +++ P+ + RFL AE+ IP+ L NKV+ ++E L+ ++
Sbjct: 85 AANLDQCILVVTVNFPETSTTFIDRFLASAEAYRIPVKLIFNKVDAYNKEELHYLDGLIN 144
Query: 134 ---TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
T GY L S G++++++ L+ +TT+ G SGVGKS+LINA+
Sbjct: 145 LYTTIGYPCLKVSALQGEGIEAVIEELKGKTTLFSGHSGVGKSTLINAIL---------- 194
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
P L D + GE+S +G HTT + P+SG GY+ DTPG
Sbjct: 195 ------PDL------DIKTGEISAYHNKGMHTTTFSEMFPVSGNGYIIDTPGIKGFGTFD 242
Query: 251 VTKQSLAQTFPEV 263
+ ++ + FPE+
Sbjct: 243 MEEEEIGHYFPEI 255
>gi|387760520|ref|YP_006067497.1| ribosome small subunit-dependent GTPase A [Streptococcus salivarius
57.I]
gi|339291287|gb|AEJ52634.1| ribosome small subunit-dependent GTPase A [Streptococcus salivarius
57.I]
Length = 290
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 115/244 (47%), Gaps = 33/244 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVIYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S+ +P L RFLV E I + ++K++LV D+ + + + G++
Sbjct: 77 VVIMSVKEPDFNCNLLDRFLVLLEHKNIKPVIYISKMDLVEDDSEMKAIQKQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N + H
Sbjct: 137 IF-------SLEELLPLLTDKITVFMGQTGVGKSTLLNRIAPQLHLE------------- 176
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 177 ---------TGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVDNAEDLSEA 226
Query: 260 FPEV 263
FPE+
Sbjct: 227 FPEI 230
>gi|340399676|ref|YP_004728701.1| putative GTPase engC [Streptococcus salivarius CCHSS3]
gi|338743669|emb|CCB94179.1| putative GTPase engC [Streptococcus salivarius CCHSS3]
Length = 290
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 115/244 (47%), Gaps = 33/244 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVIYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S+ +P L RFLV E I + ++K++LV D+ + + + G++
Sbjct: 77 VVIMSVKEPDFNCNLLDRFLVLLEHKNIKPVIYISKMDLVEDDSEMKAIQKQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N + H
Sbjct: 137 IF-------SLEELLPLLADKITVFMGQTGVGKSTLLNRIAPQLHLE------------- 176
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 177 ---------TGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVDNAEDLSEA 226
Query: 260 FPEV 263
FPE+
Sbjct: 227 FPEI 230
>gi|431797199|ref|YP_007224103.1| ribosome small subunit-dependent GTPase A [Echinicola vietnamensis
DSM 17526]
gi|430787964|gb|AGA78093.1| ribosome small subunit-dependent GTPase A [Echinicola vietnamensis
DSM 17526]
Length = 309
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 97/196 (49%), Gaps = 29/196 (14%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
+N+D L+ ++ QP+ + RF+V ES IP T+ +NK++LV +E + +H
Sbjct: 87 ASNIDQAFLVVTLKQPRTSLGFIDRFIVSTESFRIPTTIVVNKMDLVKKEKDKEFLQDIH 146
Query: 134 TWGYEPLFCSVESKLGLDS------LLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASD 187
YEPL V LD L +L +TT++ G SGVGKSSL+N + P AS
Sbjct: 147 DI-YEPLGYPVVEISALDDEGLQEVFLPKLSGKTTLLSGHSGVGKSSLLNKI--IPSAS- 202
Query: 188 AADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPS 247
Q EVS+ + +G HTT + PL GGGYL DTPG +
Sbjct: 203 -------------------QTTKEVSSFTSKGVHTTTFAEMFPLEGGGYLIDTPGIKEFG 243
Query: 248 LLKVTKQSLAQTFPEV 263
+L + Q L+ F E+
Sbjct: 244 ILDIDDQELSHYFVEM 259
>gi|225857557|ref|YP_002739068.1| ribosome-associated GTPase [Streptococcus pneumoniae P1031]
gi|410477322|ref|YP_006744081.1| ribosome-associated GTP-binding protein [Streptococcus pneumoniae
gamPNI0373]
gi|417694842|ref|ZP_12344028.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47901]
gi|444383247|ref|ZP_21181440.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS8106]
gi|444385932|ref|ZP_21184000.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS8203]
gi|444387499|ref|ZP_21185519.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS125219]
gi|444390956|ref|ZP_21188869.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS70012]
gi|444393245|ref|ZP_21190901.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS81218]
gi|444395781|ref|ZP_21193322.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0002]
gi|444398690|ref|ZP_21196170.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0006]
gi|444399509|ref|ZP_21196971.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0007]
gi|444401779|ref|ZP_21198960.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0008]
gi|444404192|ref|ZP_21201152.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0009]
gi|444406706|ref|ZP_21203376.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0010]
gi|444408996|ref|ZP_21205597.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0076]
gi|444412586|ref|ZP_21208907.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0153]
gi|444414942|ref|ZP_21211190.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0199]
gi|444417723|ref|ZP_21213741.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0360]
gi|444420768|ref|ZP_21216536.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0427]
gi|444422148|ref|ZP_21217811.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0446]
gi|225725811|gb|ACO21663.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
P1031]
gi|332199995|gb|EGJ14069.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47901]
gi|406370267|gb|AFS43957.1| ribosome-associated GTP-binding protein [Streptococcus pneumoniae
gamPNI0373]
gi|444248900|gb|ELU55399.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS8203]
gi|444250271|gb|ELU56753.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS8106]
gi|444252712|gb|ELU59173.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS125219]
gi|444255114|gb|ELU61470.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS70012]
gi|444257422|gb|ELU63759.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0002]
gi|444258767|gb|ELU65088.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0006]
gi|444261512|gb|ELU67814.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PCS81218]
gi|444267654|gb|ELU73549.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0008]
gi|444268568|gb|ELU74414.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0007]
gi|444272053|gb|ELU77791.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0010]
gi|444274548|gb|ELU80195.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0153]
gi|444277265|gb|ELU82779.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0009]
gi|444280445|gb|ELU85812.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0076]
gi|444280867|gb|ELU86214.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0199]
gi|444282964|gb|ELU88185.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0360]
gi|444283934|gb|ELU89105.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0427]
gi|444288527|gb|ELU93420.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
PNI0446]
Length = 292
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 110/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDGGELDFYQQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIATV 233
>gi|423220758|ref|ZP_17207252.1| ribosome small subunit-dependent GTPase A [Bacteroides caccae
CL03T12C61]
gi|392622804|gb|EIY16919.1| ribosome small subunit-dependent GTPase A [Bacteroides caccae
CL03T12C61]
Length = 310
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 25/196 (12%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
AN+D +L+ +++ P+ + RFL AE+ +P+ L NKV++ +EE L+ + ++
Sbjct: 85 AANLDQCMLVVTVNYPETSTIFIDRFLASAEAYRVPVKLVFNKVDVYNEEELHYLDALIN 144
Query: 134 TW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
+ GY S ++ G+D + + L + T+ G SGVGKS+LINA+
Sbjct: 145 LYTHIGYPCFKVSAKNGDGIDEIKKALEGKITLFSGHSGVGKSTLINAILPGI------- 197
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
+ + GE+ST +G HTT + P+ G GY+ DTPG
Sbjct: 198 ---------------ETKTGEISTYHNKGMHTTTFSEMFPVDGDGYIIDTPGIKGFGTFD 242
Query: 251 VTKQSLAQTFPEVCAV 266
+ ++ + FPE+ V
Sbjct: 243 MEEEEIGHYFPEIFKV 258
>gi|343502525|ref|ZP_08740375.1| GTPase RsgA [Vibrio tubiashii ATCC 19109]
gi|418479223|ref|ZP_13048313.1| GTPase RsgA [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342814250|gb|EGU49198.1| GTPase RsgA [Vibrio tubiashii ATCC 19109]
gi|384573148|gb|EIF03645.1| GTPase RsgA [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 351
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 133/273 (48%), Gaps = 54/273 (19%)
Query: 5 VQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV----VGSIDWVDRRGMIE 60
++ E CN + G+E L + GDKV+ + S++ ++ G++E
Sbjct: 54 IEDLESGEVQRCNLRRGIESL--------------VSGDKVIWRPGLESMEGIN--GVVE 97
Query: 61 NVFQRSTEI--------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTL 112
V R++ + L P ANVD ++++ S+ P+L + R+LV +E+ I L
Sbjct: 98 AVEPRTSVLTRPDYYDGLKPVAANVDQMVIVSSV-LPELSLNIIDRYLVASETLSIAPLL 156
Query: 113 ALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSG 169
LNK++L+++E L +KS L+ + GY+ LF S ++ G+ L L+D+ + VG SG
Sbjct: 157 VLNKIDLLEQEQLAEYKSWLNEYERIGYKVLFVSKQTGEGIAELEAELKDRINIFVGQSG 216
Query: 170 VGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229
VGKSSL+NAL + + GE+S SG G+HTT L
Sbjct: 217 VGKSSLVNALMPQFNVEE----------------------GEISENSGLGQHTTTASRLY 254
Query: 230 PLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GG L D+PG + L + + + + F E
Sbjct: 255 HIPTGGDLIDSPGVREFGLWHLEAEEVTKAFVE 287
>gi|256544912|ref|ZP_05472283.1| GTP-binding protein [Anaerococcus vaginalis ATCC 51170]
gi|256399411|gb|EEU13017.1| GTP-binding protein [Anaerococcus vaginalis ATCC 51170]
Length = 287
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 28/220 (12%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+C R + +K + LVGD V + + +G I + R EI P +AN+D +L
Sbjct: 22 FMCKARGVFRKKNIKPLVGDNVEFDITE--NSKGYITKILDRKNEIKRPNIANIDQILYF 79
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++ P L F + ++L E I + + ++K +L DE+ L K GY+ +F
Sbjct: 80 ITIKNPSLNLFNIDKYLAMCEHINIDVVIIVSKKDLADEKDLEFIKM-YEKIGYKLVFID 138
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ + +L+ L +T+ + G SGVGKS+ +N L
Sbjct: 139 NYNDFPKNEILKILDGKTSAVSGSSGVGKSTFLNNL------------------------ 174
Query: 204 FEDQ-RVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
ED+ +G +S KS RGK+TTRH+ + L + DTPG
Sbjct: 175 VEDEIEIGTISEKSKRGKNTTRHIEIFNLGKNTNIFDTPG 214
>gi|427392430|ref|ZP_18886435.1| ribosome small subunit-dependent GTPase A [Alloiococcus otitis ATCC
51267]
gi|425731391|gb|EKU94209.1| ribosome small subunit-dependent GTPase A [Alloiococcus otitis ATCC
51267]
Length = 293
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 112/241 (46%), Gaps = 29/241 (12%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R L +K + LVGD V + D G I V R ++ PP+AN+D ++ S
Sbjct: 28 ARGLFRKKELTPLVGDYVTFDLEEGQD--GTILEVKDRKNLLVRPPIANIDLAFVISSAV 85
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK---SRLHTWGYEPLFCSV 144
PK L R LV ES I + ++K++L ++++ K GY+ C
Sbjct: 86 DPKFSQQLLDRMLVVLESIHIQPAIYISKLDLAPHDLVHEIKVLQDYYQNLGYD-FLCPE 144
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ ++ + + + V +G SGVGKS L+N L D N
Sbjct: 145 DGQVNQGQMQAIIGHKRVVFMGQSGVGKSRLLNQLN---------DQLNLL--------- 186
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
G+ S GRG+HTTRHV LLP+ GY+ADTPGF+ L + K+ L+Q FPE
Sbjct: 187 ----TGQTSKALGRGRHTTRHVELLPIF-EGYIADTPGFSSLDLEGIEKEELSQYFPEFW 241
Query: 265 A 265
A
Sbjct: 242 A 242
>gi|379726845|ref|YP_005319030.1| ribosome small subunit-stimulated GTPase EngC [Melissococcus
plutonius DAT561]
gi|376317748|dbj|BAL61535.1| ribosome small subunit-stimulated GTPase EngC [Melissococcus
plutonius DAT561]
Length = 262
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 30/228 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV+ S + D G I ++ R E+ P VANV+ +++ SM +P L RF
Sbjct: 1 MVGDKVIFESKNLTD--GYILDILPRFNELERPTVANVNQGVIVTSMVKPLFSYNLLDRF 58
Query: 100 LVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLF-CSVESKL-GLDSLL 154
L+ E+ I + L K++L++++ +++ + + GY + ++E K G++ L
Sbjct: 59 LIILENKKIKPIIYLTKIDLLNDDGSSDVHSIQKQYEQIGYPVILGNNLEMKYKGIEVLK 118
Query: 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214
Q ++ TV +G SG GKS+L+N + S+ + A E+S
Sbjct: 119 QYFPEKLTVFMGQSGSGKSTLLNNISSNLTLATA----------------------EISE 156
Query: 215 KSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GRGKHTTRH+ L+P+ G +ADTPGF+ + K+ L + FPE
Sbjct: 157 VLGRGKHTTRHIELIPID-QGLVADTPGFSSIDFQTIEKERLPKLFPE 203
>gi|418465484|ref|ZP_13036420.1| GTPase RsgA [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359755965|gb|EHK90125.1| GTPase RsgA [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 346
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 123/269 (45%), Gaps = 40/269 (14%)
Query: 11 SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTE 68
+R +D + G C +R L V+VGD+V+ G+ G+IE V R E
Sbjct: 50 ARHADVENAQGEIFRCNLRRTLAG----VVVGDRVIWRQGNEQLQGVSGVIEGVRPRQNE 105
Query: 69 ILDPP--------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
I P AN+D ++++ S+ P L + R+LV E I + LNK +++
Sbjct: 106 ISRPDYYDGMKVIAANIDRIIIVSSV-LPSLSLNIIDRYLVVCEEAKIEPIIVLNKADML 164
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
E S+L + GY+ L S +S L+ L L D ++ VG SGVGKSSLIN
Sbjct: 165 TESQWQAVDSQLEIYRNIGYQTLMVSAQSGKNLEKLTALLSDGVSIFVGQSGVGKSSLIN 224
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
A+ PH + RVGE+S+ SG G+HTT L L GG L
Sbjct: 225 AV--LPHV--------------------EARVGEISSTSGLGQHTTTSSRLYHLPQGGSL 262
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
D+PG + L + + + + + E V
Sbjct: 263 IDSPGIREFGLWHLEDEQITKGYREFQTV 291
>gi|332685783|ref|YP_004455557.1| ribosome small subunit-stimulated GTPase EngC [Melissococcus
plutonius ATCC 35311]
gi|332369792|dbj|BAK20748.1| ribosome small subunit-stimulated GTPase EngC [Melissococcus
plutonius ATCC 35311]
Length = 302
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 32/234 (13%)
Query: 36 KRRV--LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEP 93
KR++ VGDKV+ S + D G I ++ R E+ P VANV+ +++ SM +P
Sbjct: 35 KRKIVPFVGDKVIFESKNSTD--GYILDILPRFNELERPTVANVNQGVIVTSMVKPLFSY 92
Query: 94 FALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLF-CSVESKL- 148
L RFL+ E+ I + L K++L++++ +++ + + GY + ++E K
Sbjct: 93 NLLDRFLIILENKKIKPIIYLTKIDLLNDDGSSDVHSIQKQYEQIGYPVILGNNLEMKYK 152
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
G++ L Q ++ TV +G SG GKS+L+N + S+ + A
Sbjct: 153 GIEVLKQYFPEKLTVFMGQSGSGKSTLLNNISSNLTLATA-------------------- 192
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
E+S GRGKHTTRH+ L+P+ G +ADTPGF+ + K+ L + FPE
Sbjct: 193 --EISEVLGRGKHTTRHIELIPID-QGLVADTPGFSSIDFQTIEKERLPKLFPE 243
>gi|293553679|ref|ZP_06674303.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1039]
gi|425059189|ref|ZP_18462539.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
504]
gi|291602254|gb|EFF32482.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1039]
gi|403036254|gb|EJY47611.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
504]
Length = 299
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 116/236 (49%), Gaps = 30/236 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R + K LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +
Sbjct: 30 RGNFRNRKITPLVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVE 87
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESK 147
P L RFLV E I + L K +L D+ E + K GY P+ V +
Sbjct: 88 PAFSYNLLDRFLVTLEYESIEPIIFLTKTDLSDDPEKIEEIKQTYTKIGY-PVI--VPNH 144
Query: 148 LG-LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
G L++ L ++ +V +G SG GKS+L+N + SP + A
Sbjct: 145 TGDTTELIRYLPERLSVFMGQSGAGKSTLLNQI--SPELNLAT----------------- 185
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S GRG+HTTRHV L+P+ GG +ADTPGF+ L + L + FPE
Sbjct: 186 ---GEISDALGRGRHTTRHVELIPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPE 237
>gi|422880873|ref|ZP_16927329.1| GTP-binding protein [Streptococcus sanguinis SK355]
gi|332365861|gb|EGJ43618.1| GTP-binding protein [Streptococcus sanguinis SK355]
Length = 292
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 33/237 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE L+++ GYE L
Sbjct: 84 EPDFNTNLLDRFLVLLEHKRIHPIIYISKLDLLEDERSLDSYVDVYQAIGYEVLRSP--- 140
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
+ LL L + TV +G +GVGKS+L+N + A D+ +
Sbjct: 141 ----EQLLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------E 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEI 230
>gi|387891738|ref|YP_006322035.1| ribosome small subunit-dependent GTPase A [Pseudomonas fluorescens
A506]
gi|423689605|ref|ZP_17664125.1| ribosome small subunit-dependent GTPase A [Pseudomonas fluorescens
SS101]
gi|387163083|gb|AFJ58282.1| ribosome small subunit-dependent GTPase A [Pseudomonas fluorescens
A506]
gi|388001652|gb|EIK62981.1| ribosome small subunit-dependent GTPase A [Pseudomonas fluorescens
SS101]
Length = 343
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 118/253 (46%), Gaps = 50/253 (19%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRR---GMIENVFQRSTEI--------LDPPV 74
C +RA L + + GDKVV W G+I RSTE+ L P
Sbjct: 73 CHLRANLPAL----VTGDKVV-----WRAGNQGIGVIVAQLPRSTELRRPDSRGQLKPVA 123
Query: 75 ANVDHLLLLFSMDQPKLEPFA--LTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWK 129
ANVD ++++F+ P EP A + R+LV AE GI L LNK +L+DE+ LN
Sbjct: 124 ANVDMIVIVFA---PLPEPHANLIDRYLVAAEHAGIRPLLLLNKFDLIDEQNAPALNALL 180
Query: 130 SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
+ T GY L S G++ L Q+L + +V VG SGVGKSSL+N+L
Sbjct: 181 AVYRTLGYPVLEVSAHHGNGMEQLQQQLDGRISVFVGQSGVGKSSLVNSLLPEV------ 234
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
+ RVG +S SG+G HTT L GGG L D+PG + L
Sbjct: 235 ----------------ETRVGPLSELSGQGTHTTTTARLFHFPGGGELIDSPGIREFGLG 278
Query: 250 KVTKQSLAQTFPE 262
V++ + F E
Sbjct: 279 HVSRSDVEAGFIE 291
>gi|149012427|ref|ZP_01833458.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SP19-BS75]
gi|418190217|ref|ZP_12826728.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47373]
gi|147763483|gb|EDK70419.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SP19-BS75]
gi|353853047|gb|EHE33031.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47373]
Length = 292
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFFNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|417687465|ref|ZP_12336735.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41301]
gi|418160722|ref|ZP_12797420.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17227]
gi|418167627|ref|ZP_12804279.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17971]
gi|419521934|ref|ZP_14061528.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA05245]
gi|332072169|gb|EGI82655.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41301]
gi|353820905|gb|EHE01087.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17227]
gi|353828129|gb|EHE08273.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17971]
gi|379537414|gb|EHZ02598.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA05245]
Length = 292
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYRQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|383937809|ref|ZP_09991045.1| ribosome small subunit-dependent GTPase A [Streptococcus
pseudopneumoniae SK674]
gi|383715299|gb|EID71269.1| ribosome small subunit-dependent GTPase A [Streptococcus
pseudopneumoniae SK674]
Length = 292
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDGGELDFYEQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFPEIDSV 233
>gi|312871991|ref|ZP_07732073.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
2062A-h1]
gi|311092568|gb|EFQ50930.1| ribosome small subunit-dependent GTPase A [Lactobacillus iners LEAF
2062A-h1]
Length = 297
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 42/244 (17%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFSM 86
R + + +K++ LVGD+VVV D +G+ + V R+ E+ P +AN +++LL+ S
Sbjct: 31 RGVFRNLKQKPLVGDRVVVQP----DDKGINYLVAVADRTCELQRPALANAEYVLLVMSA 86
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPL--F 141
QP L R+LV + + + L+K +L+ + L KS+L+ + GY+ +
Sbjct: 87 TQPDFSVDLLDRYLVFFAWKKVKVVIFLSKTDLISSDELLKIKSKLNEYQKIGYQYFVDY 146
Query: 142 CSVESKL--GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+E L +DS D+ V+ G SGVGKS+L+N L+ D+
Sbjct: 147 QDLEQYLQNNIDS------DEIWVLAGQSGVGKSTLLNRLKK--------DI-------- 184
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
Q+ E+S RGKHTTR +SL G GY+ADTPGF+ L + L
Sbjct: 185 ------SQKTAEISFALNRGKHTTRQISLFEY-GKGYIADTPGFSSIDLSNIKLDELKDL 237
Query: 260 FPEV 263
F E+
Sbjct: 238 FYEI 241
>gi|417793692|ref|ZP_12440964.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK255]
gi|334272347|gb|EGL90713.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK255]
Length = 292
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSAKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ F + + + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD--FVTRK-----EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 233
>gi|261254065|ref|ZP_05946638.1| ribosome small subunit-stimulated GTPase EngC [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|417954990|ref|ZP_12598017.1| GTPase RsgA [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260937456|gb|EEX93445.1| ribosome small subunit-stimulated GTPase EngC [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|342814204|gb|EGU49153.1| GTPase RsgA [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 351
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 130/273 (47%), Gaps = 54/273 (19%)
Query: 5 VQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV----VGSIDWVDRRGMIE 60
++ SE CN + G+E L + GDKV+ + S++ + G++E
Sbjct: 54 IEDSETGEVQRCNLRRGIETL--------------VSGDKVIWRPGLESMEGIS--GVVE 97
Query: 61 NVFQRST--------EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTL 112
V R++ + L P ANVD ++++ S+ P+L + R+LV +E+ I L
Sbjct: 98 AVEPRTSILTRPDYYDGLKPVAANVDQMIIVSSV-LPELSLNIIDRYLVASETLNIAPLL 156
Query: 113 ALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSG 169
LNK++L++ E L ++ L + GY+ LF S ++ G+ L L+D+ + VG SG
Sbjct: 157 VLNKIDLLESEQLTQYREWLKEYERIGYKVLFVSKQTGEGIAELEAELKDRINIFVGQSG 216
Query: 170 VGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229
VGKSSL+NAL + + GEVS SG G+HTT L
Sbjct: 217 VGKSSLVNALMPQFNVEE----------------------GEVSENSGLGQHTTTASRLY 254
Query: 230 PLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GG L D+PG + L + + + + F E
Sbjct: 255 HIPTGGDLIDSPGVREFGLWHLEAEEVTKAFVE 287
>gi|424786980|ref|ZP_18213751.1| ribosome small subunit-dependent GTPase A [Streptococcus
intermedius BA1]
gi|422114231|gb|EKU17938.1| ribosome small subunit-dependent GTPase A [Streptococcus
intermedius BA1]
Length = 292
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 113/240 (47%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P P L RFLV E I + ++K++L+ D++ L+ + GY+ E
Sbjct: 84 EPDFNPNLLDRFLVLLEQKAIHPIIYISKLDLLEDDKELDAFLDVYQAIGYDTAKTVAE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPFLTSKKTVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ + L + FPE+ AV
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVDNAEELNRAFPEIAAV 233
>gi|90407112|ref|ZP_01215301.1| ribosome-associated GTPase [Psychromonas sp. CNPT3]
gi|90311834|gb|EAS39930.1| ribosome-associated GTPase [Psychromonas sp. CNPT3]
Length = 346
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 120/249 (48%), Gaps = 37/249 (14%)
Query: 27 VVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTEI--------LDPPVAN 76
+ R L++ R ++ GD+VV G+ + G++E V R + + + P AN
Sbjct: 61 IERCTLRRAVRSLVTGDRVVWRAGNEAYHGITGVVEAVHPRDSVLTRPDYYDGIKPIAAN 120
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
+ ++++ S+ P+ + R+++ E GI +ALNK +L+DE L ++
Sbjct: 121 IGQIIIVSSV-APEFSRNIIDRYIIACEDIGITPIIALNKSDLLDETNAAIIDKELQSYR 179
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY L+CS+ GL+SL ++D+ ++ VG SGVGK+SL+N L A+
Sbjct: 180 DIGYHVLYCSMHGD-GLESLKTVMKDEISIFVGQSGVGKTSLLNMLLPEVEAT------- 231
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
GE+S SG GKHTT L + GG + D+PG + SL +
Sbjct: 232 ---------------TGEISEGSGLGKHTTTTARLYHFADGGDIIDSPGIREFSLWHLEP 276
Query: 254 QSLAQTFPE 262
+ +A F E
Sbjct: 277 ERIASGFVE 285
>gi|392310118|ref|ZP_10272652.1| GTPase RsgA [Pseudoalteromonas citrea NCIMB 1889]
Length = 352
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 123/249 (49%), Gaps = 36/249 (14%)
Query: 27 VVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEILDPP--------VAN 76
V+R +++ ++ GD+V+ + D G+IE +R +++ P AN
Sbjct: 68 VLRCNIRRTVSNLVCGDEVIFRRAKVSEGDLAGVIEATEERRSQLTRPDFYDGIKVVAAN 127
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
+D +L++ ++ P+ P + R+LV E GI L LNK++L+D+E L + L +
Sbjct: 128 IDQILMVSAV-LPEFTPQIIDRYLVACEDMGIEPILVLNKIDLLDDEGLQHIEEVLDIYR 186
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY+ L S +SK G+D L Q+L D+ ++ VG SGVGKS+L+N + P+A
Sbjct: 187 GLGYKVLLVSNKSKQGIDELKQQLVDKNSIFVGQSGVGKSTLVNTV--LPNA-------- 236
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
D +VS SG G+HTT L L GG L D+PG + L +
Sbjct: 237 ------------DILTKQVSENSGLGQHTTTVSRLHHLPSGGNLIDSPGIREFGLWHLDV 284
Query: 254 QSLAQTFPE 262
+ + F E
Sbjct: 285 ERVTFCFKE 293
>gi|418977277|ref|ZP_13525105.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK575]
gi|383350151|gb|EID28046.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK575]
Length = 292
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 117/240 (48%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K VGD V + + + G I + +R ++ PP+ N+D +++ S+
Sbjct: 26 ARGNFRKKGHTPYVGDLVDFSAEE--NSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L+ D L+ ++ GY+ V S
Sbjct: 84 EPDFNSNLLDRFLVLLEHKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTS 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
K G LL L + TV +G +GVGKS+L+N + A D+ +
Sbjct: 140 KEG---LLPLLTGKVTVFMGQTGVGKSTLLNKI--------APDL--------------N 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 175 LETGEISDSLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 233
>gi|373454498|ref|ZP_09546364.1| ribosome small subunit-dependent GTPase A [Dialister
succinatiphilus YIT 11850]
gi|371935773|gb|EHO63516.1| ribosome small subunit-dependent GTPase A [Dialister
succinatiphilus YIT 11850]
Length = 288
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 112/240 (46%), Gaps = 26/240 (10%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LC R LK+ + +LVGD V + + + +I +V+ R T + PP AN+D L
Sbjct: 21 GALSLCRSRGRLKR-RTDILVGDYVDFETGNSGET--VITHVYPRKTVLYRPPSANIDQL 77
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
+L+ ++ P L F + + +V AE G+ + +NK +L DE + GY
Sbjct: 78 VLVSAVRTPDLNLFLMDKMVVMAEEAGVEPLIVINKADL-DEAGAEKAVTYYRKAGYSAF 136
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S+ GL+ L L+ GPSGVGKS+L+N ILG
Sbjct: 137 SLSLLHDEGLEELTSALKGPIIAFSGPSGVGKSTLLNR-------------------ILG 177
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
F GEVS +GRGK+TTRH L+ +L DTPG+ + ++ L+ F
Sbjct: 178 KSHFLS---GEVSRHTGRGKNTTRHAELIQWKDRRFLMDTPGYTYLDIDRIEGNHLSYLF 234
>gi|307709723|ref|ZP_07646174.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK564]
gi|307619425|gb|EFN98550.1| ribosome small subunit-dependent GTPase A [Streptococcus mitis
SK564]
Length = 292
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 117/240 (48%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K VGD V + + + G I + +R ++ PP+ N+D +++ S+
Sbjct: 26 ARGNFRKKGHTPYVGDLVDFSAEE--NSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + ++K++L+ D L+ ++ GY+ V S
Sbjct: 84 EPDFNSNLLDRFLVLLEHKGIHPIIYISKMDLLEDRGELDFYQQTYDDIGYD----FVTS 139
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
K + LL L + TV +G +GVGKS+L+N + A D+ +
Sbjct: 140 K---EELLPLLTGKVTVFMGQTGVGKSTLLNKI--------APDL--------------N 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 175 LETGEISDSLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 233
>gi|395647918|ref|ZP_10435768.1| GTPase RsgA [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 343
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 117/253 (46%), Gaps = 50/253 (19%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRR---GMIENVFQRSTEI--------LDPPV 74
C +RA L + + GD+VV W G+I R+TE+ L P
Sbjct: 73 CHLRANLPAL----VTGDQVV-----WRAGNQGIGVIVAQLPRTTELRRPDSRGQLKPVA 123
Query: 75 ANVDHLLLLFSMDQPKLEPFA--LTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWK 129
ANVD ++++F+ P EP A + R+LV AE GI L LNK +L+DE+ LN
Sbjct: 124 ANVDMIVIVFA---PLPEPHANLIDRYLVAAEHAGIRPLLLLNKFDLIDEQNAPALNALL 180
Query: 130 SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
+ T GY L S G++ L Q+L +V VG SGVGKSSL+N+L
Sbjct: 181 AVYRTLGYPVLEVSAHHGNGMEQLQQKLDGHISVFVGQSGVGKSSLVNSLLPEV------ 234
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
D RVG +S SG+G HTT L GGG L D+PG + L
Sbjct: 235 ----------------DTRVGPLSELSGQGTHTTTTARLFHFPGGGELIDSPGIREFGLG 278
Query: 250 KVTKQSLAQTFPE 262
V++ + F E
Sbjct: 279 HVSRSDVEAGFIE 291
>gi|146297080|ref|YP_001180851.1| ribosome small subunit-dependent GTPase A [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410656|gb|ABP67660.1| ribosome small subunit-dependent GTPase A [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 290
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 26/245 (10%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
D+ G C R + +K LVGD V + ++ +I+ + R +++ PP+ANV
Sbjct: 19 DREGTIYECKARGVFRKDDITPLVGDNVTI--VEKAKGAYVIDKILPRRNQLIRPPIANV 76
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D +++ + P++ L + LV + + +NKV+L + + L K++ +
Sbjct: 77 DTAIVVVASVFPEVSFITLDKLLVNVLREKVKPLICVNKVDLDNGKTLEVVKNQYGIF-- 134
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
E + S ++ G++ L + ++ + +V G SGVGK+S++N L P
Sbjct: 135 EVIGVSAKTGEGMEKLKEHIKGKISVFAGQSGVGKTSILNCLI----------------P 178
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
L K VGE+S K RG+HTTR V LL Y+ADTPGF+ + + K L
Sbjct: 179 GLNLK------VGEISKKIERGRHTTRVVELLRAGEDTYIADTPGFSSIEITGMLKDELK 232
Query: 258 QTFPE 262
+PE
Sbjct: 233 YYYPE 237
>gi|421218701|ref|ZP_15675590.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070335]
gi|395582017|gb|EJG42481.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070335]
Length = 426
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|342732287|ref|YP_004771126.1| ribosome small subunit-dependent GTPase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384455689|ref|YP_005668284.1| putative GTPase [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417963635|ref|ZP_12605529.1| Putative ribosome biogenesis GTPase RsgA [Candidatus Arthromitus
sp. SFB-3]
gi|418016310|ref|ZP_12655875.1| ribosome small subunit-dependent GTPase A [Candidatus Arthromitus
sp. SFB-mouse-NYU]
gi|418372541|ref|ZP_12964633.1| Putative ribosome biogenesis GTPase RsgA [Candidatus Arthromitus
sp. SFB-mouse-SU]
gi|342329742|dbj|BAK56384.1| ribosome small subunit-dependent GTPase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506645|gb|EGX28939.1| ribosome small subunit-dependent GTPase A [Candidatus Arthromitus
sp. SFB-mouse-NYU]
gi|346984032|dbj|BAK79708.1| putative GTPase [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380332198|gb|EIA23080.1| Putative ribosome biogenesis GTPase RsgA [Candidatus Arthromitus
sp. SFB-3]
gi|380342210|gb|EIA30655.1| Putative ribosome biogenesis GTPase RsgA [Candidatus Arthromitus
sp. SFB-mouse-SU]
Length = 295
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 38/231 (16%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
VGD+V + ID + G+IEN+ +R ++ + P ++NV + ++ S +PK+ L + L
Sbjct: 42 VGDRVTIKIIDRNKKEGVIENIHKRVSDFIRPQISNVTQIFIVLSYLEPKINFEMLNKML 101
Query: 101 VEAESTGIPLTLALNKVEL----VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156
+ E+ G+ + + +NK +L D+EV +K+ + Y+ + SV+ + +D + +
Sbjct: 102 INFEADGVKINIVINKCDLHTDVDDKEVDELFKN----FPYDVIKISVKHENNIDIIKDK 157
Query: 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST-- 214
L + + G SGVGKSSL+N + D+ + + ST
Sbjct: 158 LCNNISCFCGASGVGKSSLLNKIV-------------------------DKNIMDTSTLS 192
Query: 215 -KSGRGKHTTRHVSLLPLSG-GGYLADTPGFNQPSLLK-VTKQSLAQTFPE 262
K RGKHTTR L+ + GYL DTPGF+ ++ K + +L + F E
Sbjct: 193 QKVKRGKHTTRFSQLVYIDELDGYLIDTPGFSSVNISKHIDIDNLREYFIE 243
>gi|419496157|ref|ZP_14035873.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47461]
gi|421303655|ref|ZP_15754318.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17484]
gi|379593177|gb|EHZ57991.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47461]
gi|395899570|gb|EJH10510.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17484]
Length = 292
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|422850040|ref|ZP_16896716.1| GTP-binding protein [Streptococcus sanguinis SK115]
gi|325688928|gb|EGD30936.1| GTP-binding protein [Streptococcus sanguinis SK115]
Length = 292
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 114/240 (47%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E I + ++K++L+ DE+ L+ + + GYE + + E
Sbjct: 84 EPDFNANLLDRFLVLLEHKRIHPIIYISKLDLLEDEQSLDVYVQAYQSIGYEVIKTTEE- 142
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 143 ------LLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ T + L Q F E+ V
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVTTAEDLNQAFLEIAEV 233
>gi|15901807|ref|NP_346411.1| ribosome-associated GTPase [Streptococcus pneumoniae TIGR4]
gi|15903840|ref|NP_359390.1| ribosome-associated GTPase [Streptococcus pneumoniae R6]
gi|111658870|ref|ZP_01409491.1| hypothetical protein SpneT_02000041 [Streptococcus pneumoniae
TIGR4]
gi|116516502|ref|YP_817203.1| ribosome-associated GTPase [Streptococcus pneumoniae D39]
gi|148985564|ref|ZP_01818753.1| ribosome-associated GTPase [Streptococcus pneumoniae SP3-BS71]
gi|148998514|ref|ZP_01825955.1| ribosome-associated GTPase [Streptococcus pneumoniae SP11-BS70]
gi|149003644|ref|ZP_01828509.1| ribosome-associated GTPase [Streptococcus pneumoniae SP14-BS69]
gi|149007459|ref|ZP_01831102.1| ribosome-associated GTPase [Streptococcus pneumoniae SP18-BS74]
gi|168492041|ref|ZP_02716184.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
CDC0288-04]
gi|168494775|ref|ZP_02718918.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
CDC3059-06]
gi|168576616|ref|ZP_02722482.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
MLV-016]
gi|221232708|ref|YP_002511862.1| GTPase EngC [Streptococcus pneumoniae ATCC 700669]
gi|225855473|ref|YP_002736985.1| ribosome-associated GTPase [Streptococcus pneumoniae JJA]
gi|225859739|ref|YP_002741249.1| ribosome-associated GTPase [Streptococcus pneumoniae 70585]
gi|237651001|ref|ZP_04525253.1| ribosome-associated GTPase [Streptococcus pneumoniae CCRI 1974]
gi|237822559|ref|ZP_04598404.1| ribosome-associated GTPase [Streptococcus pneumoniae CCRI 1974M2]
gi|307068592|ref|YP_003877558.1| putative GTPase [Streptococcus pneumoniae AP200]
gi|387758156|ref|YP_006065135.1| GTPase EngC [Streptococcus pneumoniae OXC141]
gi|415700639|ref|ZP_11458173.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
459-5]
gi|415750272|ref|ZP_11478186.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SV35]
gi|415753185|ref|ZP_11480167.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SV36]
gi|417677688|ref|ZP_12327093.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17545]
gi|417699357|ref|ZP_12348527.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41317]
gi|418074827|ref|ZP_12712075.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11184]
gi|418077199|ref|ZP_12714430.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47502]
gi|418079428|ref|ZP_12716649.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
4027-06]
gi|418081627|ref|ZP_12718835.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
6735-05]
gi|418090349|ref|ZP_12727501.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA43265]
gi|418099313|ref|ZP_12736408.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
6901-05]
gi|418106116|ref|ZP_12743170.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44500]
gi|418113319|ref|ZP_12750317.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41538]
gi|418115502|ref|ZP_12752487.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
5787-06]
gi|418117660|ref|ZP_12754628.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
6963-05]
gi|418124342|ref|ZP_12761271.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44378]
gi|418128877|ref|ZP_12765768.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NP170]
gi|418131143|ref|ZP_12768025.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA07643]
gi|418135760|ref|ZP_12772612.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11426]
gi|418138088|ref|ZP_12774924.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11663]
gi|418147225|ref|ZP_12783999.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13637]
gi|418149321|ref|ZP_12786082.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13856]
gi|418155944|ref|ZP_12792669.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA16242]
gi|418163016|ref|ZP_12799696.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17328]
gi|418174402|ref|ZP_12811012.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41277]
gi|418183526|ref|ZP_12820082.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA43380]
gi|418187970|ref|ZP_12824491.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47360]
gi|418194529|ref|ZP_12831017.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47439]
gi|418200954|ref|ZP_12837395.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47976]
gi|418217434|ref|ZP_12844112.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
Netherlands15B-37]
gi|418226342|ref|ZP_12852968.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NP112]
gi|418230769|ref|ZP_12857367.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP01]
gi|418232965|ref|ZP_12859550.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA07228]
gi|418237419|ref|ZP_12863984.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA19690]
gi|419432373|ref|ZP_13972501.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP05]
gi|419434603|ref|ZP_13974719.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA40183]
gi|419441175|ref|ZP_13981217.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA40410]
gi|419441929|ref|ZP_13981964.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13224]
gi|419454034|ref|ZP_13994003.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP03]
gi|419458538|ref|ZP_13998479.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA02254]
gi|419465344|ref|ZP_14005234.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA04175]
gi|419467642|ref|ZP_14007522.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA05248]
gi|419469785|ref|ZP_14009651.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA06083]
gi|419471862|ref|ZP_14011720.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA07914]
gi|419474058|ref|ZP_14013905.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13430]
gi|419478629|ref|ZP_14018451.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA18068]
gi|419498356|ref|ZP_14038060.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47522]
gi|419504702|ref|ZP_14044368.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47760]
gi|419506849|ref|ZP_14046509.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA49194]
gi|419513365|ref|ZP_14052997.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA05578]
gi|419517571|ref|ZP_14057185.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA02506]
gi|419524413|ref|ZP_14063985.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13723]
gi|419526704|ref|ZP_14066259.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA14373]
gi|419535467|ref|ZP_14074964.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17457]
gi|421207466|ref|ZP_15664514.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2090008]
gi|421211823|ref|ZP_15668804.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070035]
gi|421230588|ref|ZP_15687249.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2061376]
gi|421232663|ref|ZP_15689303.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2080076]
gi|421234892|ref|ZP_15691508.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2061617]
gi|421237073|ref|ZP_15693667.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2071004]
gi|421239304|ref|ZP_15695867.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2071247]
gi|421242349|ref|ZP_15698874.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2081074]
gi|421245754|ref|ZP_15702251.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2081685]
gi|421246110|ref|ZP_15702601.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2082170]
gi|421250240|ref|ZP_15706694.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2082239]
gi|421266959|ref|ZP_15717838.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SPAR27]
gi|421271411|ref|ZP_15722263.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SPAR48]
gi|421281975|ref|ZP_15732770.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA04672]
gi|421284116|ref|ZP_15734900.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA04216]
gi|421290535|ref|ZP_15741284.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA54354]
gi|421299450|ref|ZP_15750136.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA60080]
gi|421305925|ref|ZP_15756578.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA62331]
gi|421310387|ref|ZP_15761011.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA62681]
gi|421312737|ref|ZP_15763336.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA58981]
gi|421314838|ref|ZP_15765424.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47562]
gi|54037065|sp|P67685.1|RSGA_STRR6 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|54041062|sp|P67684.1|RSGA_STRPN RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|14973491|gb|AAK76051.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
TIGR4]
gi|15459483|gb|AAL00601.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116077078|gb|ABJ54798.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
D39]
gi|147755707|gb|EDK62753.1| ribosome-associated GTPase [Streptococcus pneumoniae SP11-BS70]
gi|147758376|gb|EDK65376.1| ribosome-associated GTPase [Streptococcus pneumoniae SP14-BS69]
gi|147761031|gb|EDK68000.1| ribosome-associated GTPase [Streptococcus pneumoniae SP18-BS74]
gi|147922284|gb|EDK73405.1| ribosome-associated GTPase [Streptococcus pneumoniae SP3-BS71]
gi|183573685|gb|EDT94213.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
CDC0288-04]
gi|183575318|gb|EDT95846.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
CDC3059-06]
gi|183577661|gb|EDT98189.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
MLV-016]
gi|220675170|emb|CAR69754.1| probable GTPase EngC [Streptococcus pneumoniae ATCC 700669]
gi|225720118|gb|ACO15972.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
70585]
gi|225722996|gb|ACO18849.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
JJA]
gi|301800745|emb|CBW33393.1| probable GTPase EngC [Streptococcus pneumoniae OXC141]
gi|306410129|gb|ADM85556.1| Predicted GTPase [Streptococcus pneumoniae AP200]
gi|332071961|gb|EGI82449.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17545]
gi|332199298|gb|EGJ13376.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41317]
gi|353745943|gb|EHD26608.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11184]
gi|353746048|gb|EHD26712.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
4027-06]
gi|353746145|gb|EHD26808.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47502]
gi|353750753|gb|EHD31390.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
6735-05]
gi|353760270|gb|EHD40848.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA43265]
gi|353768083|gb|EHD48609.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
6901-05]
gi|353774988|gb|EHD55472.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44500]
gi|353782250|gb|EHD62686.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41538]
gi|353784004|gb|EHD64426.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
5787-06]
gi|353787775|gb|EHD68176.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
6963-05]
gi|353794676|gb|EHD75029.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44378]
gi|353797751|gb|EHD78083.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NP170]
gi|353801369|gb|EHD81673.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA07643]
gi|353811104|gb|EHD91350.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13856]
gi|353811153|gb|EHD91398.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13637]
gi|353819650|gb|EHD99842.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA16242]
gi|353826294|gb|EHE06453.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17328]
gi|353836899|gb|EHE16986.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41277]
gi|353847530|gb|EHE27552.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA43380]
gi|353848851|gb|EHE28862.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47360]
gi|353857040|gb|EHE37005.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47439]
gi|353863521|gb|EHE43444.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47976]
gi|353869922|gb|EHE49801.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
Netherlands15B-37]
gi|353879908|gb|EHE59729.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NP112]
gi|353884891|gb|EHE64684.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP01]
gi|353885648|gb|EHE65436.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA07228]
gi|353891114|gb|EHE70872.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA19690]
gi|353900080|gb|EHE75641.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11663]
gi|353900382|gb|EHE75938.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11426]
gi|379529421|gb|EHY94668.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA02254]
gi|379536218|gb|EHZ01408.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA04175]
gi|379542555|gb|EHZ07711.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA05248]
gi|379543314|gb|EHZ08465.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA06083]
gi|379544107|gb|EHZ09253.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA07914]
gi|379549686|gb|EHZ14790.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13430]
gi|379555425|gb|EHZ20494.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13224]
gi|379555780|gb|EHZ20845.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13723]
gi|379556193|gb|EHZ21249.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA14373]
gi|379562668|gb|EHZ27678.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17457]
gi|379563907|gb|EHZ28905.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA18068]
gi|379575307|gb|EHZ40240.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA40183]
gi|379576460|gb|EHZ41385.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA40410]
gi|379598249|gb|EHZ63042.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47522]
gi|379604804|gb|EHZ69559.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47760]
gi|379605013|gb|EHZ69766.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA49194]
gi|379624711|gb|EHZ89341.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP03]
gi|379627749|gb|EHZ92359.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP05]
gi|379634530|gb|EHZ99095.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA05578]
gi|379637863|gb|EIA02413.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA02506]
gi|381308832|gb|EIC49675.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SV36]
gi|381314023|gb|EIC54800.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
459-5]
gi|381316818|gb|EIC57562.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SV35]
gi|395572209|gb|EJG32809.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070035]
gi|395573038|gb|EJG33630.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2090008]
gi|395593092|gb|EJG53345.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2061376]
gi|395594010|gb|EJG54251.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2080076]
gi|395599509|gb|EJG59675.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2061617]
gi|395600072|gb|EJG60231.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2071247]
gi|395601034|gb|EJG61187.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2071004]
gi|395606789|gb|EJG66890.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2081685]
gi|395611480|gb|EJG71552.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2081074]
gi|395612804|gb|EJG72840.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2082239]
gi|395616229|gb|EJG76240.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2082170]
gi|395866055|gb|EJG77188.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SPAR27]
gi|395866161|gb|EJG77293.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SPAR48]
gi|395879481|gb|EJG90540.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA04672]
gi|395879907|gb|EJG90963.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA04216]
gi|395886264|gb|EJG97281.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA54354]
gi|395899465|gb|EJH10406.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA60080]
gi|395904354|gb|EJH15271.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA62331]
gi|395908062|gb|EJH18946.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA58981]
gi|395908572|gb|EJH19450.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA62681]
gi|395912466|gb|EJH23325.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47562]
gi|429320125|emb|CCP33456.1| probable GTPase EngC [Streptococcus pneumoniae SPN034183]
gi|429321944|emb|CCP35430.1| probable GTPase EngC [Streptococcus pneumoniae SPN994039]
gi|429323764|emb|CCP31471.1| probable GTPase EngC [Streptococcus pneumoniae SPN994038]
Length = 292
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|417965311|ref|ZP_12606863.1| Putative ribosome biogenesis GTPase RsgA, partial [Candidatus
Arthromitus sp. SFB-4]
gi|380337971|gb|EIA26940.1| Putative ribosome biogenesis GTPase RsgA, partial [Candidatus
Arthromitus sp. SFB-4]
Length = 283
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 38/231 (16%)
Query: 41 VGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFL 100
VGD+V + ID + G+IEN+ +R ++ + P ++NV + ++ S +PK+ L + L
Sbjct: 42 VGDRVTIKIIDRNKKEGVIENIHKRVSDFIRPQISNVTQIFIVLSYLEPKINFEMLNKML 101
Query: 101 VEAESTGIPLTLALNKVEL----VDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156
+ E+ G+ + + +NK +L D+EV +K+ + Y+ + SV+ + +D + +
Sbjct: 102 INFEADGVKINIVINKCDLHTDVDDKEVDELFKN----FPYDVIKISVKHENNIDIIKDK 157
Query: 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST-- 214
L + + G SGVGKSSL+N + D+ + + ST
Sbjct: 158 LCNNISCFCGASGVGKSSLLNKIV-------------------------DKNIMDTSTLS 192
Query: 215 -KSGRGKHTTRHVSLLPLSG-GGYLADTPGFNQPSLLK-VTKQSLAQTFPE 262
K RGKHTTR L+ + GYL DTPGF+ ++ K + +L + F E
Sbjct: 193 QKVKRGKHTTRFSQLVYIDELDGYLIDTPGFSSVNISKHIDIDNLREYFIE 243
>gi|386087399|ref|YP_006003273.1| Ribosome small subunit-dependent GTPase A [Streptococcus
thermophilus ND03]
gi|387910494|ref|YP_006340800.1| ribosome small subunit-dependent GTPase A [Streptococcus
thermophilus MN-ZLW-002]
gi|312279112|gb|ADQ63769.1| Ribosome small subunit-dependent GTPase A [Streptococcus
thermophilus ND03]
gi|387575429|gb|AFJ84135.1| Ribosome small subunit-dependent GTPase A [Streptococcus
thermophilus MN-ZLW-002]
Length = 290
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 117/244 (47%), Gaps = 33/244 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++KV+LV D+ + + +++ G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKHIKPVIYISKVDLVEDDSEMKSIQTQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N R +P
Sbjct: 137 VFT-------LEELLPLLADKVTVFMGQTGVGKSTLLN--RIAPQL-------------- 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+ GE+S GRG+HTTR VSL + G +ADTPGF+ + L++
Sbjct: 174 ------NLETGEISDSLGRGRHTTRAVSLYDVHSGK-IADTPGFSSLDYEVANAEDLSEA 226
Query: 260 FPEV 263
FPE+
Sbjct: 227 FPEI 230
>gi|401685065|ref|ZP_10816935.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. BS35b]
gi|418974360|ref|ZP_13522272.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK1074]
gi|383349264|gb|EID27210.1| ribosome small subunit-dependent GTPase A [Streptococcus oralis
SK1074]
gi|400183270|gb|EJO17527.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. BS35b]
Length = 292
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
I + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKSIHPIVYISKMDLLEDRGELDFYQQTYGAIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ T + L Q FPE+ +V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSTAEDLNQAFPEIASV 233
>gi|409202546|ref|ZP_11230749.1| GTPase RsgA [Pseudoalteromonas flavipulchra JG1]
Length = 350
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 118/249 (47%), Gaps = 36/249 (14%)
Query: 27 VVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEILDPP--------VAN 76
V+R +++ ++ GD+V+ + D G+IE V +R T++ P AN
Sbjct: 66 VLRCNIRRTVTSLVCGDEVIFRRAKVSDGDLAGVIEAVHERRTQLTRPDFYDGVKVVAAN 125
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
+D +L++ ++ P+ P + R+LV E GI L LNK++L+D+E L L +
Sbjct: 126 IDQILMVSAV-VPEFTPQIIDRYLVACEDMGIEPILLLNKIDLLDQESLEYIDEVLDIYR 184
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY L S +S G+D L L D+ + VG SGVGKS+L+N + P+A
Sbjct: 185 ELGYRVLLVSTKSGEGIDELKHMLEDKNNIFVGQSGVGKSTLVNTV--LPNA-------- 234
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
D EVS SG G+HTT L L GG L D+PG + L +
Sbjct: 235 ------------DILTKEVSENSGLGQHTTTVSRLHHLPSGGNLIDSPGIREFGLWHLDV 282
Query: 254 QSLAQTFPE 262
+ + F E
Sbjct: 283 ERVTWCFKE 291
>gi|418179110|ref|ZP_12815690.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41565]
gi|353841424|gb|EHE21480.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41565]
Length = 514
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|335045556|ref|ZP_08538579.1| ribosome small subunit-dependent GTPase A [Oribacterium sp. oral
taxon 108 str. F0425]
gi|363897060|ref|ZP_09323603.1| ribosome small subunit-dependent GTPase A [Oribacterium sp. ACB7]
gi|333759342|gb|EGL36899.1| ribosome small subunit-dependent GTPase A [Oribacterium sp. oral
taxon 108 str. F0425]
gi|361959687|gb|EHL12963.1| ribosome small subunit-dependent GTPase A [Oribacterium sp. ACB7]
Length = 298
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 111/245 (45%), Gaps = 27/245 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRR--GMIENVFQRSTEILDPPVANVDHLLLL 83
C + + K R LVGD+V + ++ G I + +R E++ P V+N+D +LL
Sbjct: 24 CHAKGAFRNKKERPLVGDRVEFSEVPDSEKEHTGHILRILERKNELIRPLVSNIDQAVLL 83
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGYEPL 140
F++ P + RFL+ IP L NK +L+ D + + K
Sbjct: 84 FAVKNPAPSFPLIDRFLLHLLVKEIPCLLFFNKKDLLTREDGDFIEEIKEIYKKAELPVY 143
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F S + +L L+ +TTV GPSGVGKS++IN+L LG
Sbjct: 144 FLQGNSAEDKNRILSLLKGKTTVFSGPSGVGKSTMINSL-------------------LG 184
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+ E G +S K RGK+TTRH L Y+ DTPGF +++ ++L +
Sbjct: 185 EEKME---TGGLSEKIARGKNTTRHAEFFALDEDSYVLDTPGFTSLFPPEISPENLRYFY 241
Query: 261 PEVCA 265
PE A
Sbjct: 242 PEFEA 246
>gi|423305202|ref|ZP_17283201.1| ribosome small subunit-dependent GTPase A [Bacteroides uniformis
CL03T00C23]
gi|423311022|ref|ZP_17288991.1| ribosome small subunit-dependent GTPase A [Bacteroides uniformis
CL03T12C37]
gi|392680054|gb|EIY73428.1| ribosome small subunit-dependent GTPase A [Bacteroides uniformis
CL03T12C37]
gi|392682056|gb|EIY75406.1| ribosome small subunit-dependent GTPase A [Bacteroides uniformis
CL03T00C23]
Length = 297
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 25/196 (12%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
AN+D +L+ +++ P+ + RFL AE+ +P+ + NKV+ DEE L+ S ++
Sbjct: 72 AANLDQCMLIVTVNYPETSTTFIDRFLASAEAYRVPVKIIFNKVDAYDEEELHYLDSLIN 131
Query: 134 ---TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
T GY S G+D++ + L+ + T+ G SGVGKS+LI A+ D
Sbjct: 132 LYTTIGYPCFKVSARKGEGIDTIEKELKGRITLFSGHSGVGKSTLIKAI--------LPD 183
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
++ + GE+ST +G HTT + P+ G GY+ DTPG
Sbjct: 184 IE--------------IKTGEISTYHNKGMHTTTFSEMFPVPGNGYIIDTPGIKGFGTFD 229
Query: 251 VTKQSLAQTFPEVCAV 266
+ ++ + FPE+ V
Sbjct: 230 MEEEEIGHYFPEIFKV 245
>gi|119357863|ref|YP_912507.1| ribosome small subunit-dependent GTPase A [Chlorobium
phaeobacteroides DSM 266]
gi|119355212|gb|ABL66083.1| ribosome small subunit-dependent GTPase A [Chlorobium
phaeobacteroides DSM 266]
Length = 322
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 22/199 (11%)
Query: 64 QRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
RS E +N++ L+++ + +P L + R+LV AES +P+ + +NK++L D++
Sbjct: 95 NRSKEKKQVIASNIELLVIVVAAFEPPLSTRLIDRYLVFAESENLPVVIVVNKMDLDDDD 154
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
+ + GY + SV K GL+ L Q L + + + G SGVGKSS+IN L
Sbjct: 155 EIPALMAPYTLLGYTVILVSVRQKRGLEELDQLLSGKVSAMSGHSGVGKSSIINVL---- 210
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
G K + R S K+G+G HTT + +LPL GGYL DTPG
Sbjct: 211 ---------------TGQKRMKTAR---TSYKNGKGVHTTSNAVMLPLISGGYLIDTPGI 252
Query: 244 NQPSLLKVTKQSLAQTFPE 262
+ SL ++++ L F E
Sbjct: 253 REFSLSGISREQLRFYFRE 271
>gi|387121960|ref|YP_006287843.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415759031|ref|ZP_11481681.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416032290|ref|ZP_11572771.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416065044|ref|ZP_11581755.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416070140|ref|ZP_11583565.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|429732660|ref|ZP_19267255.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans Y4]
gi|347995424|gb|EGY36606.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|347999212|gb|EGY40063.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348000220|gb|EGY41012.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|348655147|gb|EGY70624.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385876452|gb|AFI88011.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429155579|gb|EKX98245.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans Y4]
Length = 346
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 124/269 (46%), Gaps = 40/269 (14%)
Query: 11 SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTE 68
+R +D ++ G C +R L V+VGD+V+ G+ G+IE V R E
Sbjct: 50 ARHADVENERGEIFRCNLRRTLAG----VVVGDRVIWRQGNEQLQGVSGVIEGVHPRQNE 105
Query: 69 ILDPP--------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
I P AN+D ++++ S+ P L + R+LV E I + LNK +++
Sbjct: 106 ISRPDYYDGMKVIAANIDRIIIISSV-LPSLSLNIIDRYLVVCEEAKIEPIIVLNKADML 164
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
E S+L + GY+ L S +S L+ L L D ++ VG SGVGKSSLIN
Sbjct: 165 TESQWQEVDSQLEIYRKIGYQTLMVSAQSGKNLEKLTALLSDGVSIFVGQSGVGKSSLIN 224
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
A+ PH + +VGE+S+ SG G+HTT L L GG L
Sbjct: 225 AV--LPHV--------------------EAQVGEISSTSGLGQHTTTSSRLYHLPQGGSL 262
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
D+PG + L + + + + + E V
Sbjct: 263 IDSPGIREFGLWHLKDEQITRGYREFQTV 291
>gi|421228270|ref|ZP_15684967.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2072047]
gi|395592991|gb|EJG53245.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2072047]
Length = 514
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|374334894|ref|YP_005091581.1| GTPase RsgA [Oceanimonas sp. GK1]
gi|372984581|gb|AEY00831.1| GTPase RsgA [Oceanimonas sp. GK1]
Length = 344
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 122/262 (46%), Gaps = 40/262 (15%)
Query: 14 SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTEI-- 69
+D D G C +R L + + GD+VV G+ G++E V R+T +
Sbjct: 52 ADIEDSEGKIHRCNLRRTLGSL----VTGDRVVWRPGTDILQGISGVVEAVHPRATVLTR 107
Query: 70 ------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
+ P AN+D ++++ ++ P+L + R+LV AE +P L LNKV+L+ +E
Sbjct: 108 PDYYDGIKPVAANIDQIVVVSAV-LPELSCHIIDRYLVAAEDVEMPPMLVLNKVDLLSDE 166
Query: 124 VLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
+ L + GY L S ++ GLD L Q L T++ VG SGVGKSSL+NA+
Sbjct: 167 QRRDAERDLQRYRDIGYRVLLVSCDTGEGLDELQQALSSHTSIFVGQSGVGKSSLVNAV- 225
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
PH D + G VS SG G+HTT L GG L D+
Sbjct: 226 -MPHV--------------------DVQTGAVSDNSGLGQHTTTTARLYHFPTGGSLIDS 264
Query: 241 PGFNQPSLLKVTKQSLAQTFPE 262
PG + SL + +A F E
Sbjct: 265 PGIREFSLWHLDPDRVAWCFRE 286
>gi|392540395|ref|ZP_10287532.1| GTPase RsgA [Pseudoalteromonas piscicida JCM 20779]
Length = 350
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 118/249 (47%), Gaps = 36/249 (14%)
Query: 27 VVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEILDPP--------VAN 76
V+R +++ ++ GD+V+ + D G+IE V +R T++ P AN
Sbjct: 66 VLRCNIRRTVTSLVCGDEVIFRRAKVSDGDLAGVIEAVHERRTQLTRPDFYDGVKVVAAN 125
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
+D +L++ ++ P+ P + R+LV E GI L LNK++L+D+E L L +
Sbjct: 126 IDQILMVSAV-VPEFTPQIIDRYLVACEDMGIEPILLLNKIDLLDQESLEYIDEVLDIYR 184
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY L S +S G+D L L D+ + VG SGVGKS+L+N + P+A
Sbjct: 185 ELGYRVLLVSTKSGEGIDELKHMLEDKNNIFVGQSGVGKSTLVNTV--LPNA-------- 234
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
D EVS SG G+HTT L L GG L D+PG + L +
Sbjct: 235 ------------DILTKEVSENSGLGQHTTTVSRLHHLPSGGNLIDSPGIREFGLWHLDV 282
Query: 254 QSLAQTFPE 262
+ + F E
Sbjct: 283 ERVTWCFKE 291
>gi|288800847|ref|ZP_06406304.1| ribosome small subunit-dependent GTPase A [Prevotella sp. oral
taxon 299 str. F0039]
gi|288332308|gb|EFC70789.1| ribosome small subunit-dependent GTPase A [Prevotella sp. oral
taxon 299 str. F0039]
Length = 310
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 102/213 (47%), Gaps = 25/213 (11%)
Query: 54 DRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLA 113
DR+ I Q ++ ANVD L+ +++ P+ + RFL AE+ IP+TL
Sbjct: 65 DRKNYIVRKSQNLSKQSHILAANVDQAFLIVTVNYPQTSTGFIDRFLASAEAYNIPVTLV 124
Query: 114 LNKVELVDEEVLNTWKSRLH---TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGV 170
NK +L+ E+ L+ +H T GYE + S E+ G++ L ++L ++ TV+ G SGV
Sbjct: 125 FNKKDLLQEDELHYQDMLIHLYETIGYECMAISAETGEGVEKLKKQLVNKITVLSGNSGV 184
Query: 171 GKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP 230
GKS+LIN +L + + R E+S G HTT +LP
Sbjct: 185 GKSTLIN-------------------KVLLANYM---RTSEISDVHNTGMHTTTFSEMLP 222
Query: 231 LSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ GGY+ DTPG + + + F E+
Sbjct: 223 IEEGGYIIDTPGIKGFGSFNMEPEEICSYFKEI 255
>gi|227878879|ref|ZP_03996784.1| GTP-binding protein [Lactobacillus crispatus JV-V01]
gi|256849785|ref|ZP_05555216.1| GTPase [Lactobacillus crispatus MV-1A-US]
gi|262046516|ref|ZP_06019477.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
MV-3A-US]
gi|227861513|gb|EEJ69127.1| GTP-binding protein [Lactobacillus crispatus JV-V01]
gi|256713274|gb|EEU28264.1| GTPase [Lactobacillus crispatus MV-1A-US]
gi|260572965|gb|EEX29524.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
MV-3A-US]
Length = 296
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 114/240 (47%), Gaps = 34/240 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + ++ K++ VGD V + +D +GM + + R I P VANV H+LL+ S
Sbjct: 29 ARGVFRQKKQKPAVGDHVEI----QIDDKGMSYLVKILPRINRIGRPAVANVSHVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFL + +T+ L+K +L+ E LNT K L + GY
Sbjct: 85 AVEPDFSVELLDRFLTFFSWQKVGVTIYLSKADLLSEAKLNTIKQALAYYQKIGYLVFTD 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
E ++ + +++ ++Q + G SG GKS+L+N L+ DA
Sbjct: 145 YHEMQIQIPKMIE--KNQIWTLAGQSGAGKSTLLNHLK-----KDA-------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+Q G +ST RGKHTTR V L L G G+LADTPGF+ L + L F E
Sbjct: 184 ---NQATGAISTSLNRGKHTTRKVELFKL-GAGFLADTPGFSSIDLTPIKLNELCNYFVE 239
>gi|399156527|ref|ZP_10756594.1| ribosome small subunit-dependent GTPase A [SAR324 cluster bacterium
SCGC AAA001-C10]
Length = 298
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 118/250 (47%), Gaps = 36/250 (14%)
Query: 25 LCVVRALL---KKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP-------- 73
LC +R L ++ VGD+V V + + G I +F R T++ P
Sbjct: 26 LCRIRGNLFEESSYINKIAVGDEVEV-DLTAAEDAGWILRIFPRRTKLSRRPSVGYPEQV 84
Query: 74 -VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL 132
V+N D LL++ S+ P + R LV A G+ L L+K +L + ++ ++
Sbjct: 85 LVSNADTLLMVASIRTPPFRGGLIDRLLVAASCGGLEPVLILSKADLATSDEISPIENLY 144
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
+ GY L S+ GL+SL L+++ TV+ G SGVGKSSLI AL
Sbjct: 145 SSLGYTILVTSIPESRGLESLRDLLKNRITVLSGHSGVGKSSLIKAL-----------FP 193
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+W + R+G +S KSG+G+HTTR + + GG++ DTPG + L VT
Sbjct: 194 DW-----------EIRIGRISNKSGKGRHTTRMAEMFRIPIGGFIVDTPGIRELEPL-VT 241
Query: 253 KQSLAQTFPE 262
L F E
Sbjct: 242 ANELDSHFVE 251
>gi|256843393|ref|ZP_05548881.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
125-2-CHN]
gi|312984160|ref|ZP_07791506.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
CTV-05]
gi|423318410|ref|ZP_17296287.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
FB049-03]
gi|423322015|ref|ZP_17299886.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
FB077-07]
gi|256614813|gb|EEU20014.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
125-2-CHN]
gi|310894379|gb|EFQ43455.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
CTV-05]
gi|405591469|gb|EKB64971.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
FB077-07]
gi|405596134|gb|EKB69491.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
FB049-03]
Length = 296
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 114/239 (47%), Gaps = 34/239 (14%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFSM 86
R + ++ K++ VGD V + +D +GM + + R I P VANV H+LL+ S
Sbjct: 30 RGVFRQKKQKPAVGDHVEI----QIDDKGMSYLVKILPRINRIGRPAVANVSHVLLVISA 85
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCS 143
+P L RFL + +T+ L+K +L+ E LNT K L + GY
Sbjct: 86 VEPDFSVELLDRFLTFFSWQKVGVTIYLSKADLLSEAKLNTIKQALAYYQKIGYLVFTDY 145
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
E ++ + +++ ++Q + G SG GKS+L+N L+ DA
Sbjct: 146 HEMQIQIPKMIE--KNQIWTLAGQSGAGKSTLLNHLK-----KDA--------------- 183
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+Q G +ST RGKHTTR V L L G G+LADTPGF+ L + L F E
Sbjct: 184 --NQATGAISTSLNRGKHTTRKVELFKL-GAGFLADTPGFSSIDLTPIKLNELCNYFVE 239
>gi|349611594|ref|ZP_08890827.1| ribosome small subunit-dependent GTPase A [Lactobacillus sp.
7_1_47FAA]
gi|348608441|gb|EGY58423.1| ribosome small subunit-dependent GTPase A [Lactobacillus sp.
7_1_47FAA]
Length = 297
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 42/244 (17%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFSM 86
R + + +K++ LVGD+VVV D +G+ + V R+ E+ P +AN +++LL+ S
Sbjct: 31 RGIFRNLKQKPLVGDRVVVQP----DDKGINYLVAVADRTCELQRPALANAEYVLLVMSA 86
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPL--F 141
QP L R+LV + + + L+K +L+ + L KS+L+ + GY+ +
Sbjct: 87 TQPDFSVDLLDRYLVFFAWKKVKVVIFLSKTDLIPSDELLKIKSKLNEYQKIGYQYFVDY 146
Query: 142 CSVESKL--GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+E L +DS D+ V+ G SGVGKS+L+N L+ D+
Sbjct: 147 QDLEQYLQNNIDS------DEIWVLAGQSGVGKSTLLNRLKK--------DI-------- 184
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
Q+ E+S RGKHTTR +SL G GY+ADTPGF+ L + L
Sbjct: 185 ------SQKTAEISFALNRGKHTTRQISLFEY-GKGYIADTPGFSSIDLSNIKLDELKDL 237
Query: 260 FPEV 263
F E+
Sbjct: 238 FYEI 241
>gi|238854790|ref|ZP_04645120.1| ribosome small subunit-dependent GTPase A [Lactobacillus jensenii
269-3]
gi|260664021|ref|ZP_05864874.1| ribosome small subunit-dependent GTPase A [Lactobacillus jensenii
SJ-7A-US]
gi|313472302|ref|ZP_07812794.1| ribosome small subunit-dependent GTPase A [Lactobacillus jensenii
1153]
gi|238832580|gb|EEQ24887.1| ribosome small subunit-dependent GTPase A [Lactobacillus jensenii
269-3]
gi|239529850|gb|EEQ68851.1| ribosome small subunit-dependent GTPase A [Lactobacillus jensenii
1153]
gi|260561907|gb|EEX27876.1| ribosome small subunit-dependent GTPase A [Lactobacillus jensenii
SJ-7A-US]
Length = 295
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 118/239 (49%), Gaps = 30/239 (12%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R + +K + + VGD V V +D +IE VF+R I P V+NV H+LL+ S
Sbjct: 28 ARGVFRKRQEKPQVGDLVKV-QLDEHGTNYLIE-VFERKNRIGRPAVSNVSHVLLVISAV 85
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES- 146
+P L RFL E +P+T+ L+K +L +E L KS L YE + SV S
Sbjct: 86 EPDFSVNLLDRFLTFFEWQKVPVTIYLSKSDLATKEQLEAIKSALSY--YEEIGYSVFSN 143
Query: 147 KLGLD-SLLQRLRDQTT-VIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
K L+ +LL ++D + G SG GKS+L+N L+ DA
Sbjct: 144 KKKLEKALLSLIKDNEIWTLAGQSGAGKSTLLNFLK-----EDAG--------------- 183
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
Q GE+S RGKHTTR V L S GG++ADTPGF+ L + + L F E+
Sbjct: 184 --QDTGEISKSLNRGKHTTRSVQLFTYS-GGFIADTPGFSAIDLGPIKIKELQNYFVEL 239
>gi|194334658|ref|YP_002016518.1| ribosome small subunit-dependent GTPase A [Prosthecochloris
aestuarii DSM 271]
gi|194312476|gb|ACF46871.1| ribosome small subunit-dependent GTPase A [Prosthecochloris
aestuarii DSM 271]
Length = 316
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 98/199 (49%), Gaps = 22/199 (11%)
Query: 64 QRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
RS E + +N+D L ++ S D P L + R+LV A S +P+ + +NK +L ++
Sbjct: 90 NRSKEKIQVIASNIDQLCVVVSADDPPLNLRLIDRYLVFAGSEQMPVLIIINKTDLARQK 149
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
L GY + S ES G+++LL L + + G SGVGKS+LIN L
Sbjct: 150 ELEEEMRVYADLGYPLCYVSAESGEGIEALLDLLSGKISAFSGHSGVGKSTLINRL---- 205
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
+G E + E+S + RG HTT + +L L GGGY+ DTPG
Sbjct: 206 ---------------IGE---ERLKTAEISAGNSRGVHTTTNAVMLSLPGGGYVIDTPGI 247
Query: 244 NQPSLLKVTKQSLAQTFPE 262
+ +L VT ++L FPE
Sbjct: 248 REFNLSGVTSENLRFWFPE 266
>gi|293380315|ref|ZP_06626389.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
214-1]
gi|290923130|gb|EFE00059.1| ribosome small subunit-dependent GTPase A [Lactobacillus crispatus
214-1]
Length = 296
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 114/240 (47%), Gaps = 34/240 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + ++ K++ VGD V + +D +GM + + R I P VANV H+LL+ S
Sbjct: 29 ARGVFRQKKQKPAVGDHVEI----QIDDKGMSYLVKILPRINRIGRPAVANVSHVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFL + +T+ L+K +L+ E LNT K L + GY
Sbjct: 85 AVEPDFSVELLDRFLTFFSWQKVGVTIYLSKADLLSEAKLNTIKQALAYYQKIGYLVFTD 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
E ++ + +++ ++Q + G SG GKS+L+N L+ DA
Sbjct: 145 YHEMQIQIPKMIE--KNQIWTLAGQSGAGKSTLLNHLK-----KDA-------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+Q G +ST RGKHTTR V L L G G+LADTPGF+ L + L F E
Sbjct: 184 ---NQATGAISTSLNRGKHTTRKVELFKL-GAGFLADTPGFSSIDLTPIKLNELCNYFVE 239
>gi|429332808|ref|ZP_19213520.1| GTPase RsgA [Pseudomonas putida CSV86]
gi|428762564|gb|EKX84767.1| GTPase RsgA [Pseudomonas putida CSV86]
Length = 343
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 121/265 (45%), Gaps = 50/265 (18%)
Query: 14 SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRR---GMIENVFQRSTEI- 69
+D + G C +RA L + + GD+VV W G+I RSTE+
Sbjct: 61 ADDGAEAGQVFRCHLRANLPAL----VTGDRVV-----WRAGNQGIGVIVAQLPRSTELC 111
Query: 70 -------LDPPVANVDHLLLLFSMDQPKLEPFA--LTRFLVEAESTGIPLTLALNKVELV 120
L P ANVD ++++F+ P EP A + R+LV AE GI L LNK +L+
Sbjct: 112 RPDSRGQLKPVAANVDLIVIVFA---PAPEPHANLIDRYLVAAEHAGIRPLLLLNKADLI 168
Query: 121 DEE---VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
DE+ LN + GY L S G+ L L +V VG SGVGKSSL+N
Sbjct: 169 DEQNAPALNALLAVYRQLGYPLLEVSAHHGNGMQQLQTMLDGHISVFVGQSGVGKSSLVN 228
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
+L DV RVGE+S SG+G+HTT L GGG L
Sbjct: 229 SL--------LPDVQT--------------RVGELSEWSGQGQHTTTTARLYHFPGGGEL 266
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPE 262
D+PG + L+ V++ + F E
Sbjct: 267 IDSPGIREFGLVHVSRDDVEAGFIE 291
>gi|418963502|ref|ZP_13515339.1| ribosome small subunit-dependent GTPase A [Streptococcus anginosus
subsp. whileyi CCUG 39159]
gi|383343098|gb|EID21293.1| ribosome small subunit-dependent GTPase A [Streptococcus anginosus
subsp. whileyi CCUG 39159]
Length = 292
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 112/240 (46%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIADRKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P P L RFLV E I + ++K++L+ D++ L+ + GY ++
Sbjct: 84 EPDFNPNLLDRFLVLLEQKAIHPIIYISKLDLLEDDKELDAFLDVYQAIGY-------DT 136
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
+ LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 137 AKAVTELLPFLTSKKTVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVDNAEDLNQAFPEIAEV 233
>gi|340355043|ref|ZP_08677736.1| ribosome-associated GTP-binding protein [Sporosarcina newyorkensis
2681]
gi|339622724|gb|EGQ27238.1| ribosome-associated GTP-binding protein [Sporosarcina newyorkensis
2681]
Length = 293
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 129/255 (50%), Gaps = 32/255 (12%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANV 77
+ G + C R + + LVGD +V + D + I +V R +E++ PP+ANV
Sbjct: 17 EHNGELIQCKSRGVFRLKGINPLVGD-IVTYTPDG-ENDATITDVHTRKSELVRPPIANV 74
Query: 78 DHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY 137
D +LL+FS+ +P + L RFL ES + + ++K +L +++ + ++ L Y
Sbjct: 75 DQVLLVFSVVEPDMSLRLLDRFLTVIESHRLEPIIYVSKEDLANQQTIAENEANLAY--Y 132
Query: 138 EPLFCSVESKLGLDS-LLQRLR----DQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
+ + ++ +G D L++ LR +TTV+ G SGVGKS+L+N +
Sbjct: 133 QRIGYTILRNVGNDEPLIEVLRPYISGKTTVLAGQSGVGKSTLLNTIL------------ 180
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
P L + + G +S GRGKHTTRHV LL ++ G +ADTPGF+ +
Sbjct: 181 ----PEL------ELKTGVISDALGRGKHTTRHVELLEIA-DGLVADTPGFSSLDFEHIE 229
Query: 253 KQSLAQTFPEVCAVG 267
K+ L F E+ G
Sbjct: 230 KEELRDCFVEISEAG 244
>gi|418069026|ref|ZP_12706306.1| GTPase [Pediococcus acidilactici MA18/5M]
gi|357537759|gb|EHJ21782.1| GTPase [Pediococcus acidilactici MA18/5M]
Length = 309
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 29/244 (11%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R + + + LVGD VV + D+ G I ++ R E++ PP+AN+D +++ +
Sbjct: 28 ARGNFRNQQTKPLVGD--VVDFKENSDQTGYITSIHPRKNELVRPPLANIDQAVVVTAAT 85
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLF-CS 143
QP L R LV I + +K +L+D E K + GY+ +F
Sbjct: 86 QPDFSANLLDRQLVALAEKKISAVIYFSKTDLLDNEAYQDLKQIADYYQKIGYQVVFPVR 145
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
+ G+ +L + ++ T+ +G +G GKS+L+N + +P L +
Sbjct: 146 QKDDAGVKALRKLFAERLTIFMGQTGAGKSTLLNRI----------------DPDLNIQ- 188
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
GEVS RGKHTTR VSL+ + GG +ADTPGF+ ++ ++ L + F E+
Sbjct: 189 -----TGEVSQALNRGKHTTRKVSLMNID-GGLVADTPGFSSYAVFEMADTELKECFLEI 242
Query: 264 CAVG 267
+G
Sbjct: 243 KQIG 246
>gi|282850872|ref|ZP_06260246.1| ribosome small subunit-dependent GTPase A [Lactobacillus gasseri
224-1]
gi|420147425|ref|ZP_14654701.1| Putative ribosome biogenesis GTPase RsgA [Lactobacillus gasseri
CECT 5714]
gi|282557824|gb|EFB63412.1| ribosome small subunit-dependent GTPase A [Lactobacillus gasseri
224-1]
gi|398401426|gb|EJN54928.1| Putative ribosome biogenesis GTPase RsgA [Lactobacillus gasseri
CECT 5714]
Length = 297
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 112/238 (47%), Gaps = 34/238 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + + K++ LVGD+VVV +D +GM + + R+ EI P VANV +LL+ S
Sbjct: 29 ARGVFRDRKQKPLVGDRVVV----QLDNQGMNYLIEILPRTNEIGRPAVANVSKVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L R+L + + + L+K ++ E L K +L + GY
Sbjct: 85 AVEPDFSLELLDRYLTFFAWKNVGVVIYLSKADITPTEKLKAIKCKLDYYQKIGYSVFED 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E + L +++Q +DQ + G SG GKS+L+N L +
Sbjct: 145 AEELERQLPTMIQ--KDQIWTLAGQSGAGKSTLLNKLENEA------------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+Q G +ST RGKHTTR V L S G++ADTPGF+ L K+ L F
Sbjct: 184 ---NQETGAISTALNRGKHTTRQVKLFKYS-SGFIADTPGFSAIDLFKIKVDELGNYF 237
>gi|238852571|ref|ZP_04642981.1| ribosome small subunit-dependent GTPase A [Lactobacillus gasseri
202-4]
gi|238834717|gb|EEQ26944.1| ribosome small subunit-dependent GTPase A [Lactobacillus gasseri
202-4]
Length = 297
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 112/238 (47%), Gaps = 34/238 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + + K++ LVGD+VVV +D +GM + + R+ EI P VANV +LL+ S
Sbjct: 29 ARGVFRDRKQKPLVGDRVVV----QLDNQGMNYLIEILPRTNEIGRPAVANVSRVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L R+L + + + L+K ++ E L K +L + GY
Sbjct: 85 AVEPDFSLELLDRYLTFFAWKNVGVVIYLSKADITPTEKLKAIKCKLDYYQKIGYSVFED 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E + L +++Q +DQ + G SG GKS+L+N L +
Sbjct: 145 AEELERQLPTMIQ--KDQIWTLAGQSGAGKSTLLNKLENEA------------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+Q G +ST RGKHTTR V L S G++ADTPGF+ L K+ L F
Sbjct: 184 ---NQETGAISTALNRGKHTTRQVKLFKYS-SGFIADTPGFSAIDLFKIKVDELGNYF 237
>gi|381336978|ref|YP_005174753.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides J18]
gi|356644944|gb|AET30787.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides J18]
Length = 299
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 31/238 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K K++ LVGD V + + G I + +R ++ PP+AN+D +++ +
Sbjct: 32 ARGEFRKSKQKPLVGDFV---DFESENDEGFIWAIHERENFLVRPPIANIDIAVIVTAAK 88
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCSV 144
+P P L R LV E+ + + +K++L+++ E +N + + GY+ +F
Sbjct: 89 EPDFAPNLLDRQLVALEAANVRPLIYFSKMDLLEKSEHEKINHVANYYQSIGYDVIFS-- 146
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+SK ++L L+D +V +G +G GKS+L+N L P LG +
Sbjct: 147 DSKSAFEALKMMLKDHVSVFMGQTGAGKSTLLNHL----------------SPQLGLE-- 188
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GEVS RGKHTTR V+L+ + +ADTPGF+ + + L FPE
Sbjct: 189 ----TGEVSKALSRGKHTTRQVTLIEVD-EALIADTPGFSSYEVFDFPVEELDDYFPE 241
>gi|421269196|ref|ZP_15720062.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SPAR95]
gi|395867061|gb|EJG78186.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SPAR95]
Length = 292
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQDFPEIATV 233
>gi|116618604|ref|YP_818975.1| GTPase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
gi|122271196|sp|Q03W20.1|RSGA_LEUMM RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|116097451|gb|ABJ62602.1| Predicted GTPase [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
Length = 295
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 31/238 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K K++ LVGD V + + G I + +R ++ PP+AN+D +++ +
Sbjct: 28 ARGEFRKSKQKPLVGDFV---DFESENDEGFIWAIHERENFLVRPPIANIDIAVIVTAAK 84
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCSV 144
+P P L R LV E+ + + +K++L+++ E +N + + GY+ +F
Sbjct: 85 EPDFAPNLLDRQLVALEAANVRPLIYFSKMDLLEKSEHEKINHVANYYQSIGYDVIFS-- 142
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+SK ++L L+D +V +G +G GKS+L+N L P LG +
Sbjct: 143 DSKSAFEALKMMLKDHVSVFMGQTGAGKSTLLNHL----------------SPQLGLE-- 184
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GEVS RGKHTTR V+L+ + +ADTPGF+ + + L FPE
Sbjct: 185 ----TGEVSKALSRGKHTTRQVTLIEVD-EALIADTPGFSSYEVFDFPVEELDDYFPE 237
>gi|410638332|ref|ZP_11348896.1| ribosome-associated GTPase [Glaciecola lipolytica E3]
gi|410142252|dbj|GAC16101.1| ribosome-associated GTPase [Glaciecola lipolytica E3]
Length = 343
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 40/264 (15%)
Query: 12 RTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRST-- 67
+ +D D +G C +R + V+ GDKV G G+IE V R +
Sbjct: 49 KHADVQDASGEVTKCHIRRTIGS----VVCGDKVEFRPGKDANEGVNGVIELVHDRISVL 104
Query: 68 ------EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD 121
+ + P AN+D ++++ S+ P L + R+LV +E I L LNK+E+++
Sbjct: 105 TRPDFYDGVKPIAANIDQIIIVSSV-LPALSLNIIDRYLVASEDVQIKPVLLLNKIEMLN 163
Query: 122 EEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINA 178
+E ++ +++L + GY+ L S ++ G+ L Q L D+ +V VG SGVGKSS++N
Sbjct: 164 DEERSSVEAQLQIYKDIGYQVLLTSCKTGEGIAQLKQNLSDKVSVFVGQSGVGKSSIVNQ 223
Query: 179 LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238
L P A D+ +G++S SG G+HTT +L GGG L
Sbjct: 224 LL--PDA--------------------DEAIGDISDNSGLGQHTTTAAKMLHFPGGGDLI 261
Query: 239 DTPGFNQPSLLKVTKQSLAQTFPE 262
D+PG + +L ++ + + F E
Sbjct: 262 DSPGVREFALWHLSVEKVTSGFIE 285
>gi|339640359|ref|ZP_08661803.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. oral
taxon 056 str. F0418]
gi|339453628|gb|EGP66243.1| ribosome small subunit-dependent GTPase A [Streptococcus sp. oral
taxon 056 str. F0418]
Length = 291
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 33/238 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD+V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDEVEFSA--EKDSEGYILKIAERKNSLIRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVD-EEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI L L+K++L++ + L+++ + GY+ V
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPILYLSKLDLLEVRDELDSFLQVYRSIGYD-----VAR 138
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
+G LL L +TTV +G +GVGKS+L+N + A D+
Sbjct: 139 SVG--ELLPLLSMKTTVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
GE+S GRG+HTTR VSL L+GG +ADTPGF+ L Q FPE+
Sbjct: 175 LETGEISESLGRGRHTTRAVSLYNLNGGK-IADTPGFSSIDYEVSQADELNQAFPEIA 231
>gi|315634035|ref|ZP_07889324.1| GTP-binding protein [Aggregatibacter segnis ATCC 33393]
gi|315477285|gb|EFU68028.1| GTP-binding protein [Aggregatibacter segnis ATCC 33393]
Length = 372
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 123/269 (45%), Gaps = 40/269 (14%)
Query: 11 SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTE 68
+R +D + G C +R L V+VGD+V+ G+ G+IE V R E
Sbjct: 76 ARHADVENVQGEIFRCNLRRTLAS----VVVGDRVIWRQGNEQLQGVSGVIEGVHGRKNE 131
Query: 69 ILDPP--------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
I P AN+D ++++ S+ P L + R+LV E I + LNK +++
Sbjct: 132 ISRPDYYDGIKVIAANIDRIIIISSV-LPSLSLNIIDRYLVVCEEANIEPIIVLNKADML 190
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
EE S+L + GY+ L S ++K L+ L L D ++ VG SGVGKSSLIN
Sbjct: 191 TEEQWQDVDSQLKIYRDIGYQTLMVSAQNKKNLEKLTALLSDGVSIFVGQSGVGKSSLIN 250
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
A+ + A VGE+S+ SG G+HTT L L GG L
Sbjct: 251 AVLPNVAA----------------------LVGEISSTSGLGQHTTTSSRLYHLPQGGSL 288
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
D+PG + L + + + + + E V
Sbjct: 289 IDSPGIREFGLWHLEDEQITKGYREFQTV 317
>gi|447913817|ref|YP_007395229.1| Ribosome small subunit-stimulated GTPase EngC [Enterococcus faecium
NRRL B-2354]
gi|445189526|gb|AGE31168.1| Ribosome small subunit-stimulated GTPase EngC [Enterococcus faecium
NRRL B-2354]
Length = 299
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 115/236 (48%), Gaps = 30/236 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R + K LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +
Sbjct: 30 RGNFRNRKITPLVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVE 87
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESK 147
P L RFLV E I + L K +L D+ E + K GY P+ V +
Sbjct: 88 PAFSYNLLDRFLVTLEYESIEPIIFLTKTDLSDDPEKIEEIKQTYTKIGY-PVI--VPNH 144
Query: 148 LG-LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
G L++ ++ +V +G SG GKS+L+N + SP + A
Sbjct: 145 TGDTTELIRYFPERLSVFMGQSGAGKSTLLNQI--SPELNLAT----------------- 185
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S GRG+HTTRHV L+P+ GG +ADTPGF+ L + L + FPE
Sbjct: 186 ---GEISDTLGRGRHTTRHVELIPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPE 237
>gi|58337591|ref|YP_194176.1| hypothetical protein LBA1316 [Lactobacillus acidophilus NCFM]
gi|227904231|ref|ZP_04022036.1| GTP-binding protein [Lactobacillus acidophilus ATCC 4796]
gi|75357506|sp|Q5FJH9.1|RSGA_LACAC RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|58254908|gb|AAV43145.1| hypothetical protein LBA1316 [Lactobacillus acidophilus NCFM]
gi|227867879|gb|EEJ75300.1| GTP-binding protein [Lactobacillus acidophilus ATCC 4796]
Length = 296
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 122/257 (47%), Gaps = 43/257 (16%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDP 72
D TG+ + R + ++ K++ VGD+V + +D +GM + + R I P
Sbjct: 17 DVETATGI-VRTRARGVFRQKKQKPAVGDRVEI----QIDDKGMSYLVEILPRINRIGRP 71
Query: 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL 132
VANV H+LL+ S +P L RFL + +T+ L+K +L+ E+ LN K L
Sbjct: 72 AVANVSHVLLVISAVEPDFSLELLDRFLTFFSWQKVNVTIYLSKADLISEQRLNEIKESL 131
Query: 133 HTW---GYEPLFCS---VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHA 185
+ GY P+F +E K+G ++D Q + G SG GKS+L+N L+
Sbjct: 132 DYYQKIGY-PVFIDYHHLEEKIG-----DMIKDNQIWTLAGQSGAGKSTLLNHLK----- 180
Query: 186 SDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ 245
DA +Q G +ST RGKHTTR V L L G G+LADTPGF+
Sbjct: 181 KDA-----------------NQTTGAISTSLNRGKHTTRKVELFKL-GHGFLADTPGFSS 222
Query: 246 PSLLKVTKQSLAQTFPE 262
L + L F E
Sbjct: 223 IDLTPIKLNELCNYFIE 239
>gi|168487121|ref|ZP_02711629.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
CDC1087-00]
gi|169833128|ref|YP_001695337.1| ribosome-associated GTPase [Streptococcus pneumoniae Hungary19A-6]
gi|194397972|ref|YP_002038566.1| ribosome-associated GTPase [Streptococcus pneumoniae G54]
gi|418185731|ref|ZP_12822269.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47283]
gi|419480796|ref|ZP_14020599.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA19101]
gi|419491894|ref|ZP_14031628.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47179]
gi|419494090|ref|ZP_14033814.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47210]
gi|419500498|ref|ZP_14040191.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47597]
gi|419511223|ref|ZP_14050863.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NP141]
gi|419530998|ref|ZP_14070523.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA40028]
gi|419533168|ref|ZP_14072682.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47794]
gi|421216043|ref|ZP_15672963.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070109]
gi|421275680|ref|ZP_15726508.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA52612]
gi|168995630|gb|ACA36242.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
Hungary19A-6]
gi|183569980|gb|EDT90508.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
CDC1087-00]
gi|194357639|gb|ACF56087.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
G54]
gi|353847635|gb|EHE27656.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47283]
gi|379569384|gb|EHZ34355.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA19101]
gi|379570793|gb|EHZ35753.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA40028]
gi|379591426|gb|EHZ56251.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47179]
gi|379592069|gb|EHZ56887.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47210]
gi|379598554|gb|EHZ63342.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47597]
gi|379604912|gb|EHZ69666.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47794]
gi|379630678|gb|EHZ95260.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NP141]
gi|395579423|gb|EJG39923.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070109]
gi|395872855|gb|EJG83951.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA52612]
gi|429316774|emb|CCP36492.1| probable GTPase EngC [Streptococcus pneumoniae SPN034156]
Length = 292
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYRQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N L P L + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKLV----------------PDL------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|148993154|ref|ZP_01822720.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SP9-BS68]
gi|168489989|ref|ZP_02714188.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SP195]
gi|417679945|ref|ZP_12329340.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17570]
gi|418126617|ref|ZP_12763521.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44511]
gi|418192410|ref|ZP_12828911.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47388]
gi|418215165|ref|ZP_12841898.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA54644]
gi|418235166|ref|ZP_12861741.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA08780]
gi|419436792|ref|ZP_13976876.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
8190-05]
gi|419485185|ref|ZP_14024959.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA43257]
gi|419509063|ref|ZP_14048713.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA49542]
gi|421221049|ref|ZP_15677884.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070425]
gi|421223298|ref|ZP_15680079.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070531]
gi|421279742|ref|ZP_15730547.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17301]
gi|421294953|ref|ZP_15745673.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA56113]
gi|421301811|ref|ZP_15752480.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA19998]
gi|147928128|gb|EDK79146.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SP9-BS68]
gi|183571620|gb|EDT92148.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SP195]
gi|332072065|gb|EGI82552.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17570]
gi|353795226|gb|EHD75577.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44511]
gi|353854732|gb|EHE34704.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47388]
gi|353868730|gb|EHE48615.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA54644]
gi|353885882|gb|EHE65667.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA08780]
gi|379581105|gb|EHZ45993.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA43257]
gi|379610271|gb|EHZ75003.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA49542]
gi|379611460|gb|EHZ76184.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
8190-05]
gi|395585527|gb|EJG45907.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070425]
gi|395586583|gb|EJG46951.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070531]
gi|395878478|gb|EJG89543.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17301]
gi|395892146|gb|EJH03138.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA56113]
gi|395897946|gb|EJH08899.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA19998]
Length = 292
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYRQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N L P L + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKLV----------------PDL------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|374851011|dbj|BAL53984.1| hypothetical conserved protein [uncultured planctomycete]
gi|374854276|dbj|BAL57162.1| hypothetical conserved protein [uncultured planctomycete]
Length = 379
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 127/255 (49%), Gaps = 39/255 (15%)
Query: 21 GVELLCVVRALLKKI----KRRVLVGDKVVV-------GSIDWVD-RRGMIENVFQRSTE 68
G CVVR LL+ + + V+ GD+V + GSI+ V+ R G++ +
Sbjct: 101 GRTFRCVVRKLLRDLSIDERHIVVTGDRVWIRPATAQEGSIERVEPRHGLLTRGAKGKEH 160
Query: 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW 128
I+ ANVD ++++ S+ +P L+P + R+LV AE + + NK +LVD V W
Sbjct: 161 II---AANVDQVVIVASLAEPILKPHLVDRYLVSAEKGQLRPIICFNKADLVDL-VNYQW 216
Query: 129 KSRLHTW-GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASD 187
+++ G + S + G+D L + L+++ TV G SGVGKSSL+NA+
Sbjct: 217 LIGMYSQLGIPVIPASARTGFGIDRLKELLKNRQTVFAGQSGVGKSSLLNAI-------- 268
Query: 188 AADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPS 247
+P L K V EVS + +G+HTT L+ L G ++ DTPG Q
Sbjct: 269 --------QPGLQLK------VREVSEATQKGRHTTTTAELIRLDFGAWVVDTPGIRQFM 314
Query: 248 LLKVTKQSLAQTFPE 262
L ++ + L FPE
Sbjct: 315 LWEIVPEELDGYFPE 329
>gi|418122032|ref|ZP_12758974.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44194]
gi|353791507|gb|EHD71883.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44194]
Length = 514
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYRQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N L P L + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKLV----------------PDL------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|440740155|ref|ZP_20919650.1| GTPase RsgA [Pseudomonas fluorescens BRIP34879]
gi|447919666|ref|YP_007400234.1| GTPase RsgA [Pseudomonas poae RE*1-1-14]
gi|440377840|gb|ELQ14475.1| GTPase RsgA [Pseudomonas fluorescens BRIP34879]
gi|445203529|gb|AGE28738.1| GTPase RsgA [Pseudomonas poae RE*1-1-14]
Length = 343
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 118/253 (46%), Gaps = 50/253 (19%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRR---GMIENVFQRSTEI--------LDPPV 74
C +RA L + + GDKVV W G+I R+TE+ L P
Sbjct: 73 CHLRANLPAL----VTGDKVV-----WRAGNQGIGVIVAQLPRTTELRRPDSRGQLKPVA 123
Query: 75 ANVDHLLLLFSMDQPKLEPFA--LTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWK 129
ANVD ++++F+ P EP A + R+LV AE GI L LNK +L+D++ LN
Sbjct: 124 ANVDMIVIVFA---PLPEPHANLIDRYLVAAEHAGIRPLLLLNKFDLIDDQNAPALNALL 180
Query: 130 SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
+ T GY L S G++ L Q+L + +V VG SGVGKSSL+N+L
Sbjct: 181 AVYRTLGYPVLEVSAHHGDGMEQLQQQLDGRISVFVGQSGVGKSSLVNSLLPEV------ 234
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
D RVG +S SG+G HTT L GGG L D+PG + L
Sbjct: 235 ----------------DTRVGPLSELSGQGTHTTTTARLFHFPGGGELIDSPGIREFGLG 278
Query: 250 KVTKQSLAQTFPE 262
V++ + F E
Sbjct: 279 HVSRSDVEAGFIE 291
>gi|418027634|ref|ZP_12666257.1| Hydrolase acting on phosphorous-containing anhydrides
[Streptococcus thermophilus CNCM I-1630]
gi|354690688|gb|EHE90631.1| Hydrolase acting on phosphorous-containing anhydrides
[Streptococcus thermophilus CNCM I-1630]
Length = 290
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 33/244 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N++
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNINQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV D+ + + +++ G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKHIKPVIYISKMDLVEDDSEMKSIQTQYQRIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N R +P
Sbjct: 137 VFT-------LEELLPLLADKVTVFMGQTGVGKSTLLN--RIAPQL-------------- 173
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
+ GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 174 ------NLETGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVANAEDLSEA 226
Query: 260 FPEV 263
FPE+
Sbjct: 227 FPEI 230
>gi|387784912|ref|YP_006070995.1| putative GTPase engC [Streptococcus salivarius JIM8777]
gi|338745794|emb|CCB96160.1| putative GTPase engC [Streptococcus salivarius JIM8777]
Length = 290
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 33/244 (13%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + + + G I + QR ++ PP+ N+D
Sbjct: 19 GVVYQTRARGNFRKKGQTPYVGDFVEFSAEE--NSEGYILKIGQRINSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEP 139
+++ S +P L RFLV E I + ++K++LV D+ + + + G++
Sbjct: 77 VVIMSAKEPDFNSNLLDRFLVLLEHKNIKPVIYISKMDLVEDDSEMKAIQKQYQKIGFDF 136
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
+F L+ LL L D+ TV +G +GVGKS+L+N R +P
Sbjct: 137 IFS-------LEELLPLLTDKITVFMGQTGVGKSTLLN--RIAPELK------------- 174
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
GE+S GRG+HTTR VSL + GG +ADTPGF+ + L++
Sbjct: 175 -------LETGEISDSLGRGRHTTRAVSLYDVHGGK-IADTPGFSSLDYEVDNAEDLSEA 226
Query: 260 FPEV 263
FPE+
Sbjct: 227 FPEI 230
>gi|425046815|ref|ZP_18450803.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
510]
gi|403023152|gb|EJY35438.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
510]
Length = 299
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 115/236 (48%), Gaps = 30/236 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R + K LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +
Sbjct: 30 RGNFRNRKITPLVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVE 87
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESK 147
P L RFLV E I + L K +L D+ E + K GY P+ V +
Sbjct: 88 PAFSYNLLDRFLVTLEYESIEPIIFLTKTDLSDDPEKIEEIKQTYTKIGY-PVI--VPNH 144
Query: 148 LG-LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
G L++ ++ +V +G SG GKS+L+N + SP + A
Sbjct: 145 TGDTTELIRYFPERLSVFMGQSGAGKSTLLNQI--SPELNLAT----------------- 185
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S GRG+HTTRHV L+P+ GG +ADTPGF+ L + L + FPE
Sbjct: 186 ---GEISDALGRGRHTTRHVELIPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPE 237
>gi|342164662|ref|YP_004769301.1| GTPase RsgA [Streptococcus pseudopneumoniae IS7493]
gi|341934544|gb|AEL11441.1| GTPase RsgA [Streptococcus pseudopneumoniae IS7493]
Length = 292
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ +V
Sbjct: 192 RTVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIASV 233
>gi|262401568|ref|ZP_06078135.1| ribosome small subunit-stimulated GTPase EngC [Vibrio sp. RC586]
gi|262352283|gb|EEZ01412.1| ribosome small subunit-stimulated GTPase EngC [Vibrio sp. RC586]
Length = 353
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 121/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R I V + L P A
Sbjct: 65 CNLRRGIESLVSGDKVLWRPGAETLAG---ISGVVEAVETRSSIL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYTTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALL------------ 227
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ ED G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 228 --------PELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGNLIDSPGVREFGLWHLE 279
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 280 SDDVTKAYVE 289
>gi|69245431|ref|ZP_00603426.1| Protein of unknown function DUF258 [Enterococcus faecium DO]
gi|257879842|ref|ZP_05659495.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257882568|ref|ZP_05662221.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257886034|ref|ZP_05665687.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257891683|ref|ZP_05671336.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257894158|ref|ZP_05673811.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260559515|ref|ZP_05831696.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|261206666|ref|ZP_05921364.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289565027|ref|ZP_06445481.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
D344SRF]
gi|293563689|ref|ZP_06678130.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1162]
gi|293570101|ref|ZP_06681181.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1071]
gi|294614913|ref|ZP_06694804.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1636]
gi|294618615|ref|ZP_06698154.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1679]
gi|294623691|ref|ZP_06702524.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
U0317]
gi|314938227|ref|ZP_07845527.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133a04]
gi|314943124|ref|ZP_07849922.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133C]
gi|314949321|ref|ZP_07852663.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0082]
gi|314952255|ref|ZP_07855269.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133A]
gi|314992111|ref|ZP_07857561.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133B]
gi|314996293|ref|ZP_07861349.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133a01]
gi|383329931|ref|YP_005355815.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus faecium
Aus0004]
gi|389869747|ref|YP_006377170.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium DO]
gi|406579476|ref|ZP_11054707.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD4E]
gi|406581815|ref|ZP_11056950.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD3E]
gi|406584223|ref|ZP_11059258.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD2E]
gi|406589677|ref|ZP_11064105.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD1E]
gi|410937643|ref|ZP_11369502.1| ribosome small subunit-dependent GTPase A [Enterococcus sp. GMD5E]
gi|415892940|ref|ZP_11550039.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4453]
gi|416138834|ref|ZP_11599111.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4452]
gi|424790094|ref|ZP_18216687.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
V689]
gi|424797360|ref|ZP_18222958.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
S447]
gi|424849930|ref|ZP_18274357.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R501]
gi|424859985|ref|ZP_18283960.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R499]
gi|424898955|ref|ZP_18322502.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R497]
gi|424952103|ref|ZP_18367141.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R496]
gi|424953486|ref|ZP_18368444.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R494]
gi|424957017|ref|ZP_18371769.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R446]
gi|424960827|ref|ZP_18375308.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1986]
gi|424965092|ref|ZP_18379119.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1190]
gi|424967578|ref|ZP_18381271.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1140]
gi|424970943|ref|ZP_18384417.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1139]
gi|424974726|ref|ZP_18387943.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1137]
gi|424977462|ref|ZP_18390473.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1123]
gi|424979755|ref|ZP_18392589.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV99]
gi|424985888|ref|ZP_18398345.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV69]
gi|424986856|ref|ZP_18399258.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV38]
gi|424992533|ref|ZP_18404590.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV26]
gi|424995166|ref|ZP_18407063.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV168]
gi|424999157|ref|ZP_18410797.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV165]
gi|425001030|ref|ZP_18412566.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV161]
gi|425004973|ref|ZP_18416256.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV102]
gi|425008272|ref|ZP_18419365.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV1]
gi|425011292|ref|ZP_18422201.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E422]
gi|425013386|ref|ZP_18424118.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E417]
gi|425017688|ref|ZP_18428184.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
C621]
gi|425020444|ref|ZP_18430749.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
C497]
gi|425030248|ref|ZP_18435442.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
C1904]
gi|425033030|ref|ZP_18438033.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
515]
gi|425036358|ref|ZP_18441121.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
514]
gi|425039083|ref|ZP_18443648.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
513]
gi|425041971|ref|ZP_18446343.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
511]
gi|425048044|ref|ZP_18451969.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
509]
gi|425053660|ref|ZP_18457190.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
506]
gi|425061729|ref|ZP_18464937.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
503]
gi|427397662|ref|ZP_18890144.1| ribosome small subunit-dependent GTPase A [Enterococcus durans
FB129-CNAB-4]
gi|430821477|ref|ZP_19440085.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0045]
gi|430827182|ref|ZP_19445346.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0164]
gi|430829996|ref|ZP_19448065.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0269]
gi|430832557|ref|ZP_19450600.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0333]
gi|430837172|ref|ZP_19455147.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0680]
gi|430839958|ref|ZP_19457894.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0688]
gi|430845352|ref|ZP_19463246.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1050]
gi|430847145|ref|ZP_19464992.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1133]
gi|430851322|ref|ZP_19469072.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1185]
gi|430854015|ref|ZP_19471737.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1258]
gi|430856278|ref|ZP_19473977.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1392]
gi|430859196|ref|ZP_19476811.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1552]
gi|430861038|ref|ZP_19478630.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1573]
gi|430906581|ref|ZP_19485016.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1575]
gi|430964171|ref|ZP_19487619.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1576]
gi|431014800|ref|ZP_19490342.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1578]
gi|431216456|ref|ZP_19501207.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1620]
gi|431239336|ref|ZP_19503639.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1622]
gi|431265358|ref|ZP_19506060.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1623]
gi|431312205|ref|ZP_19508855.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1626]
gi|431387251|ref|ZP_19511614.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1627]
gi|431449114|ref|ZP_19513955.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1630]
gi|431512491|ref|ZP_19515918.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1634]
gi|431560987|ref|ZP_19519619.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1731]
gi|431668784|ref|ZP_19524146.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1904]
gi|431747442|ref|ZP_19536236.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2134]
gi|431749941|ref|ZP_19538671.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2297]
gi|431756193|ref|ZP_19544831.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2883]
gi|431761105|ref|ZP_19549692.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E3346]
gi|431766089|ref|ZP_19554585.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4215]
gi|431768621|ref|ZP_19557056.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1321]
gi|431771741|ref|ZP_19560118.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1644]
gi|431774672|ref|ZP_19562977.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2369]
gi|431777742|ref|ZP_19565993.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2560]
gi|431780438|ref|ZP_19568617.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4389]
gi|431783160|ref|ZP_19571282.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E6012]
gi|431784116|ref|ZP_19572161.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E6045]
gi|68195813|gb|EAN10249.1| Protein of unknown function DUF258 [Enterococcus faecium DO]
gi|257814070|gb|EEV42828.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257818226|gb|EEV45554.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257821890|gb|EEV49020.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257828043|gb|EEV54669.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257830537|gb|EEV57144.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260074614|gb|EEW62935.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|260079159|gb|EEW66852.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289163234|gb|EFD11080.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
D344SRF]
gi|291587473|gb|EFF19357.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1071]
gi|291592199|gb|EFF23817.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1636]
gi|291595134|gb|EFF26472.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1679]
gi|291596906|gb|EFF28124.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
U0317]
gi|291604373|gb|EFF33866.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1162]
gi|313589537|gb|EFR68382.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133a01]
gi|313593325|gb|EFR72170.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133B]
gi|313595597|gb|EFR74442.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133A]
gi|313598132|gb|EFR76977.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133C]
gi|313642423|gb|EFS07003.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0133a04]
gi|313644270|gb|EFS08850.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
TX0082]
gi|364090931|gb|EHM33458.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4452]
gi|364092978|gb|EHM35293.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4453]
gi|378939625|gb|AFC64697.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus faecium
Aus0004]
gi|388534996|gb|AFK60188.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium DO]
gi|402916515|gb|EJX37381.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R501]
gi|402921207|gb|EJX41666.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
S447]
gi|402921238|gb|EJX41696.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
V689]
gi|402926063|gb|EJX46131.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R499]
gi|402927710|gb|EJX47645.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R496]
gi|402931979|gb|EJX51525.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R497]
gi|402938878|gb|EJX57844.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R494]
gi|402944649|gb|EJX63047.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
R446]
gi|402944972|gb|EJX63351.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1190]
gi|402945764|gb|EJX64095.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1986]
gi|402954068|gb|EJX71723.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1140]
gi|402955683|gb|EJX73194.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1137]
gi|402960436|gb|EJX77580.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1139]
gi|402964971|gb|EJX81719.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV69]
gi|402965793|gb|EJX82481.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
P1123]
gi|402968197|gb|EJX84691.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV99]
gi|402973078|gb|EJX89227.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV26]
gi|402975685|gb|EJX91625.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV38]
gi|402978065|gb|EJX93830.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV168]
gi|402980115|gb|EJX95744.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV165]
gi|402987642|gb|EJY02689.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV161]
gi|402988014|gb|EJY03043.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV102]
gi|402993011|gb|EJY07662.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
ERV1]
gi|402997457|gb|EJY11778.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E422]
gi|403001087|gb|EJY15162.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E417]
gi|403003827|gb|EJY17682.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
C1904]
gi|403003896|gb|EJY17745.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
C621]
gi|403009250|gb|EJY22709.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
C497]
gi|403011437|gb|EJY24747.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
515]
gi|403014993|gb|EJY27941.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
514]
gi|403017440|gb|EJY30187.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
513]
gi|403024993|gb|EJY37105.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
511]
gi|403029320|gb|EJY41081.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
506]
gi|403031770|gb|EJY43360.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
509]
gi|403040655|gb|EJY51717.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
503]
gi|404455512|gb|EKA02359.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD4E]
gi|404459003|gb|EKA05376.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD3E]
gi|404464413|gb|EKA09954.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD2E]
gi|404470471|gb|EKA15103.1| Putative ribosome biogenesis GTPase RsgA [Enterococcus sp. GMD1E]
gi|410733776|gb|EKQ75698.1| ribosome small subunit-dependent GTPase A [Enterococcus sp. GMD5E]
gi|425721973|gb|EKU84873.1| ribosome small subunit-dependent GTPase A [Enterococcus durans
FB129-CNAB-4]
gi|430438430|gb|ELA48861.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0045]
gi|430444362|gb|ELA54217.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0164]
gi|430479314|gb|ELA56570.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0269]
gi|430479843|gb|ELA57053.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0333]
gi|430487602|gb|ELA64322.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0680]
gi|430490198|gb|ELA66740.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0688]
gi|430495757|gb|ELA71893.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1050]
gi|430534284|gb|ELA74745.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1185]
gi|430537818|gb|ELA78133.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1133]
gi|430539692|gb|ELA79932.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1258]
gi|430544038|gb|ELA84083.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1552]
gi|430545111|gb|ELA85105.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1392]
gi|430550627|gb|ELA90410.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1573]
gi|430554539|gb|ELA94141.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1575]
gi|430555232|gb|ELA94776.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1576]
gi|430559624|gb|ELA98972.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1578]
gi|430569821|gb|ELB08801.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1620]
gi|430571943|gb|ELB10815.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1622]
gi|430576193|gb|ELB14862.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1623]
gi|430579154|gb|ELB17690.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1626]
gi|430580808|gb|ELB19274.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1627]
gi|430585506|gb|ELB23791.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1630]
gi|430586410|gb|ELB24667.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1634]
gi|430589828|gb|ELB27928.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1731]
gi|430599950|gb|ELB37632.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1904]
gi|430606269|gb|ELB43627.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2134]
gi|430610892|gb|ELB48022.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2297]
gi|430615648|gb|ELB52592.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2883]
gi|430622479|gb|ELB59200.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E3346]
gi|430627159|gb|ELB63676.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4215]
gi|430629040|gb|ELB65462.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1321]
gi|430632731|gb|ELB68932.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1644]
gi|430633557|gb|ELB69712.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2369]
gi|430639035|gb|ELB74926.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2560]
gi|430639850|gb|ELB75705.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E4389]
gi|430645833|gb|ELB81335.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E6012]
gi|430650157|gb|ELB85511.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E6045]
Length = 299
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 115/236 (48%), Gaps = 30/236 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R + K LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +
Sbjct: 30 RGNFRNRKITPLVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVE 87
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESK 147
P L RFLV E I + L K +L D+ E + K GY P+ V +
Sbjct: 88 PAFSYNLLDRFLVTLEYESIEPIIFLTKTDLSDDPEKIEEIKQTYTKIGY-PVI--VPNH 144
Query: 148 LG-LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
G L++ ++ +V +G SG GKS+L+N + SP + A
Sbjct: 145 TGDTTELIRYFPERLSVFMGQSGAGKSTLLNQI--SPELNLAT----------------- 185
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S GRG+HTTRHV L+P+ GG +ADTPGF+ L + L + FPE
Sbjct: 186 ---GEISDALGRGRHTTRHVELIPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPE 237
>gi|334365951|ref|ZP_08514896.1| ribosome small subunit-dependent GTPase A [Alistipes sp. HGB5]
gi|390946517|ref|YP_006410277.1| ribosome small subunit-dependent GTPase A [Alistipes finegoldii DSM
17242]
gi|313157846|gb|EFR57256.1| ribosome small subunit-dependent GTPase A [Alistipes sp. HGB5]
gi|390423086|gb|AFL77592.1| ribosome small subunit-dependent GTPase A [Alistipes finegoldii DSM
17242]
Length = 306
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 99/189 (52%), Gaps = 22/189 (11%)
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
ANVD LL+ ++ P+ + RFLV E+ +P+T+ L+K++L D + + + + +
Sbjct: 89 ANVDQALLMATLRSPETATEFVDRFLVTCEAYKVPVTILLSKIDLQDPQAVADFHAVYES 148
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
GY + S + G+ ++ + L+ +TT++ G SGVGKS+LI A+
Sbjct: 149 AGYRVMEVSSATGEGVGAVHELLKGRTTLVSGNSGVGKSTLIRAI--------------- 193
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
+P L D R GE+S +G+HTT ++ PL+ GG + DTPG L+ +
Sbjct: 194 -DPSL------DIRTGEISESHHKGRHTTTFSTMYPLAEGGAVIDTPGIKGFGLIDIDDA 246
Query: 255 SLAQTFPEV 263
L FPE+
Sbjct: 247 ELWHYFPEM 255
>gi|261209802|ref|ZP_05924105.1| ribosome small subunit-stimulated GTPase EngC [Vibrio sp. RC341]
gi|260841158|gb|EEX67675.1| ribosome small subunit-stimulated GTPase EngC [Vibrio sp. RC341]
Length = 353
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 120/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R I V + L P A
Sbjct: 65 CNLRRGIESLVSGDKVLWRPGAETLAG---ISGVVEAVETRSSIL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYTTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALLPELE-------- 231
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
ED G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 232 ------------EDVEEGAISETSGLGQHTTTAARLYHIPSGGNLIDSPGVREFGLWHLE 279
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 280 TDDVTKAYVE 289
>gi|408790121|ref|ZP_11201754.1| Ribosome small subunit-stimulated GTPase EngC [Lactobacillus florum
2F]
gi|408520695|gb|EKK20730.1| Ribosome small subunit-stimulated GTPase EngC [Lactobacillus florum
2F]
Length = 303
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 119/243 (48%), Gaps = 31/243 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R +K + LVGD V S D G I ++ R E++ PP+AN D +++ S+ +
Sbjct: 31 RGNFRKRDVKPLVGDLVEFSSNGEKD--GYIRSILPRRNELVRPPIANTDQAIVVTSIVE 88
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW----GYEPLFCSV 144
P+ L + LV E I L +K++LV E + ++++ + GY P+F +
Sbjct: 89 PEFSDILLDKELVALEKEHISPLLYFSKLDLVAPETREHFLTKINQYQTLIGY-PVFLAD 147
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+ L L RL + TV++G +GVGKS+L+N L EP L
Sbjct: 148 AGDV-LAQLRARLTKKQTVVLGQTGVGKSTLLNQL----------------EPDLRLA-- 188
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264
GE+S GRGKHTTR VSL ++ G +ADTPGF+ L ++ + L FPE
Sbjct: 189 ----TGEISQVLGRGKHTTRKVSLQKIN-HGLIADTPGFSSFDTLNISVKVLKNYFPEFV 243
Query: 265 AVG 267
V
Sbjct: 244 RVA 246
>gi|152996652|ref|YP_001341487.1| ribosome-associated GTPase [Marinomonas sp. MWYL1]
gi|150837576|gb|ABR71552.1| ribosome small subunit-dependent GTPase A [Marinomonas sp. MWYL1]
Length = 344
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 125/256 (48%), Gaps = 46/256 (17%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRR---GMIENVFQRSTEI-------- 69
G C +RA L ++ + GDKVV W ++ G++ R T +
Sbjct: 68 GTSTRCNLRANLGQL----VTGDKVV-----WRPKQNEGGVVVATTPRHTSLSRPDMHGR 118
Query: 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK 129
+ P AN+DH++++ + +P + R+LV AE+ GIP + LNK +L+DE+
Sbjct: 119 IKPVAANIDHIIVVIAA-EPVAHANLIDRYLVAAETVGIPPVILLNKCDLIDEKNKADLD 177
Query: 130 SRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHAS 186
+ L T+ Y+ + S++++ G+++L L+D+T+V VG SGVGKSSLI L
Sbjct: 178 NLLKTYEDLNYKIIRTSIKNQAGMEALYDFLQDKTSVFVGQSGVGKSSLIGTL------- 230
Query: 187 DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQP 246
D+ D VGE+S K +G HTT L + GG L D+PG +
Sbjct: 231 -LPDI--------------DISVGELSQKRKKGVHTTTTARLFHMPKGGDLIDSPGIREF 275
Query: 247 SLLKVTKQSLAQTFPE 262
L +++ L F E
Sbjct: 276 GLWHISEDELLNGFIE 291
>gi|418323810|ref|ZP_12935072.1| ribosome small subunit-dependent GTPase A [Staphylococcus
pettenkoferi VCU012]
gi|365229156|gb|EHM70319.1| ribosome small subunit-dependent GTPase A [Staphylococcus
pettenkoferi VCU012]
Length = 291
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 111/242 (45%), Gaps = 30/242 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R L +K K +VGD VV + G I +V +R+ ++ PPV+N+DHL+++ S
Sbjct: 28 RGLFRKKKFSPIVGD--VVDFEVENESEGYIYHVHERTNQLKRPPVSNIDHLVIVMSAKA 85
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE--- 145
P L RFLV A S + ++ + K +L+ ++ RL Y L SVE
Sbjct: 86 PDFSSQLLDRFLVIAHSYALAPSIVVTKKDLLSDDEAREVNERLEV--YRDLGYSVEVVG 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+D L + V+ G SGVGKS+L+N F P L E
Sbjct: 144 RDDAVDQLFTNWSEGLVVLSGQSGVGKSTLLNK----------------FHPELS---LE 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA 265
Q ++S RG+HTTRH+ L GY+ADTPGF+ + K L F E+
Sbjct: 185 TQ---DISKALNRGRHTTRHIELFQFE-KGYVADTPGFSALDFDHIDKSELKDYFVEIKD 240
Query: 266 VG 267
G
Sbjct: 241 YG 242
>gi|224476330|ref|YP_002633936.1| hypothetical protein Sca_0841 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|254766840|sp|B9DPK4.1|RSGA_STACT RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|222420937|emb|CAL27751.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 291
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 114/242 (47%), Gaps = 30/242 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R L +K K +VGD +V I+ V G I++V +R E+ PPV+N+DHL+++ S +
Sbjct: 28 RGLFRKKKFSPIVGD-IVDFEIENV-TEGYIQHVHERQNELKRPPVSNIDHLVIVMSAVE 85
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVE 145
P + RFLV A S G+ + + K ++ + + + L + GY F V
Sbjct: 86 PDFSTQLVDRFLVIAHSYGLNPRIVVTKKDMASDSQIERIEKDLDVYRAIGYPVQF--VG 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++++ V+ G SGVGKS+L+NA R P L +
Sbjct: 144 KNDNIETIFDEWGSGLAVLSGQSGVGKSTLLNAYR----------------PDLAIE--- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA 265
++S RGKHTTRHV L GG++ADTPGF+ + K + F E+
Sbjct: 185 ---TNQISKSLNRGKHTTRHVELFERK-GGFVADTPGFSALDFDHIHKDEVKDYFLEIQE 240
Query: 266 VG 267
G
Sbjct: 241 YG 242
>gi|418158326|ref|ZP_12795039.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA16833]
gi|353821111|gb|EHE01290.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA16833]
Length = 514
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|429885620|ref|ZP_19367200.1| Ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae
PS15]
gi|429227514|gb|EKY33524.1| Ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae
PS15]
Length = 353
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 122/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R I V + L P A
Sbjct: 65 CNLRRGIESLVSGDKVLWRPGAETLAG---ISGVVEAVETRSSIL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ +TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYSTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALL------------ 227
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ ED G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 228 --------PELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGDLIDSPGVREFGLWHLE 279
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 280 TDDVTKAYVE 289
>gi|170717218|ref|YP_001784338.1| ribosome-associated GTPase [Haemophilus somnus 2336]
gi|254766806|sp|B0UT89.1|RSGA_HAES2 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|168825347|gb|ACA30718.1| ribosome small subunit-dependent GTPase A [Haemophilus somnus 2336]
Length = 350
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 120/249 (48%), Gaps = 36/249 (14%)
Query: 27 VVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTEI--------LDPPVAN 76
++R L++ + V+VGD+VV G RG+IE V R +I L P AN
Sbjct: 65 IIRCNLRRTLKSVVVGDRVVWRKGKEQLQGVRGVIEAVQPRHNQIVRPDYYDGLKPIAAN 124
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
+D ++++ ++ P L + R+LV ES+ IP + +NK +L+ E +L +
Sbjct: 125 IDRIIIVSAV-LPNLSLNIIDRYLVVCESSNIPAVIVVNKADLLSSEARIEVGLQLEIYR 183
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GYE L S +S ++ L L + T++ VG SGVGKSSLIN + +A
Sbjct: 184 KIGYETLLISAKSGENMEKLTALLSEGTSIFVGQSGVGKSSLINYILPEVNA-------- 235
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
+ G++S SG G+HTT L LS GG L D+PG + L + +
Sbjct: 236 --------------QTGKLSQVSGLGQHTTTSSRLYHLSQGGNLIDSPGIREFGLWHLDR 281
Query: 254 QSLAQTFPE 262
+ + + E
Sbjct: 282 EQITNGYRE 290
>gi|116629422|ref|YP_814594.1| GTPase [Lactobacillus gasseri ATCC 33323]
gi|311110929|ref|ZP_07712326.1| ribosome small subunit-dependent GTPase A [Lactobacillus gasseri
MV-22]
gi|122273640|sp|Q044G6.1|RSGA_LACGA RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|116095004|gb|ABJ60156.1| Predicted GTPase [Lactobacillus gasseri ATCC 33323]
gi|311066083|gb|EFQ46423.1| ribosome small subunit-dependent GTPase A [Lactobacillus gasseri
MV-22]
Length = 297
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 112/238 (47%), Gaps = 34/238 (14%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDPPVANVDHLLLLFS 85
R + + K++ LVGD+VVV +D +GM + + R+ EI P VANV +LL+ S
Sbjct: 29 ARGVFRDRKQKPLVGDRVVV----QLDNQGMNYLIEILPRTNEIGRPAVANVSKVLLVIS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L R+L + + + L+K ++ E L K +L + GY
Sbjct: 85 AVEPDFSLELLDRYLTFFAWKNVGVVIYLSKADITPTEKLKAIKCKLDYYQKIGYSVFED 144
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ E + L +++Q +DQ + G SG GKS+L+N L +
Sbjct: 145 AEELERQLPTMIQ--KDQIWTLAGQSGAGKSTLLNKLENEA------------------- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+Q G +ST RGKHTTR V L S G++ADTPGF+ L K+ L F
Sbjct: 184 ---NQETGAISTALNRGKHTTRQVKLFKYS-SGFIADTPGFSAIDLFKIKVDELENYF 237
>gi|148989984|ref|ZP_01821259.1| ribosome-associated GTPase [Streptococcus pneumoniae SP6-BS73]
gi|149021934|ref|ZP_01835921.1| ribosome-associated GTPase [Streptococcus pneumoniae SP23-BS72]
gi|418103662|ref|ZP_12740733.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NP070]
gi|418170088|ref|ZP_12806728.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA19077]
gi|419476305|ref|ZP_14016139.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA14688]
gi|419482994|ref|ZP_14022779.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA40563]
gi|419487449|ref|ZP_14027210.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44128]
gi|421209736|ref|ZP_15666747.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070005]
gi|421225814|ref|ZP_15682550.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070768]
gi|421241432|ref|ZP_15697976.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2080913]
gi|421273648|ref|ZP_15724487.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SPAR55]
gi|147924644|gb|EDK75730.1| ribosome-associated GTPase [Streptococcus pneumoniae SP6-BS73]
gi|147929972|gb|EDK80960.1| ribosome-associated GTPase [Streptococcus pneumoniae SP23-BS72]
gi|353774441|gb|EHD54932.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NP070]
gi|353833400|gb|EHE13511.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA19077]
gi|379557885|gb|EHZ22923.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA14688]
gi|379578459|gb|EHZ43371.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA40563]
gi|379585085|gb|EHZ49946.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44128]
gi|395572391|gb|EJG32988.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070005]
gi|395588507|gb|EJG48836.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070768]
gi|395606710|gb|EJG66813.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2080913]
gi|395872963|gb|EJG84057.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
SPAR55]
Length = 292
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N L P L + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKLV----------------PDL------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|325106097|ref|YP_004275751.1| ribosome small subunit-dependent GTPase A [Pedobacter saltans DSM
12145]
gi|324974945|gb|ADY53929.1| ribosome small subunit-dependent GTPase A [Pedobacter saltans DSM
12145]
Length = 306
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 107/237 (45%), Gaps = 36/237 (15%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV----------ANVDHLLLLFSMDQ 88
V VGD +V ++ G+I + R I+ + AN+D L+ ++
Sbjct: 42 VAVGD-IVTFELEPDQETGVISKIEPRKNYIIRKSINLSKQAHIIAANMDQAFLIVTLAS 100
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFCSVE 145
P+ + RFLV AE+ IP TL NK++L EE +L + S GY S
Sbjct: 101 PRTSLGFIDRFLVTAEAYHIPATLIFNKLDLFSEEGLDILEDFMSIYEDIGYPCYTVSAN 160
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+D + L+D+TT+ G SGVGKSSLIN L P L
Sbjct: 161 DGTNIDLIEDLLKDKTTLFSGHSGVGKSSLINKLI----------------PNL------ 198
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + GE+S S GKHTT + L GG L DTPG + + + K+ LA FPE
Sbjct: 199 EIKTGEISDWSDSGKHTTTFAEMYDLPFGGKLIDTPGIRELGVFDIDKKQLAHYFPE 255
>gi|163783950|ref|ZP_02178919.1| hypothetical protein HG1285_12382 [Hydrogenivirga sp. 128-5-R1-1]
gi|159880785|gb|EDP74320.1| hypothetical protein HG1285_12382 [Hydrogenivirga sp. 128-5-R1-1]
Length = 296
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 118/242 (48%), Gaps = 39/242 (16%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
+ +LKK K + GD V ID + IE++ +R ++ P VANVD +L++ +
Sbjct: 31 KKVLKKTK--ICAGDYVFGEIID--NESFAIEDIEERKNLLIRPKVANVDKVLVVQTFKL 86
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVD-------EEVLNTWKSRLHTWGYEPLF 141
P + F L LV + G+ + NK++L+D +E++N +K GYE
Sbjct: 87 PPFDDFLLDNLLVVYDYLGVEPVIVFNKIDLLDDSEKEKLQEIINIYKD----AGYEVYK 142
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S +++ G++ L L ++ GPSG GKSSL++ L
Sbjct: 143 ISTKTEEGIEKLKNSLEGSIIIVAGPSGSGKSSLVSKLTGLN------------------ 184
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQ-PSLLKVTKQSLAQTF 260
E Q EVS K+ RGKHTT V+L +S ++ADTPGF+ +L+ + K+ + F
Sbjct: 185 --LETQ---EVSQKTKRGKHTTTRVTLYKISQNTFIADTPGFSSVDALVFMDKKQVKDYF 239
Query: 261 PE 262
E
Sbjct: 240 RE 241
>gi|422921589|ref|ZP_16954805.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae BJG-01]
gi|341648546|gb|EGS72601.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae BJG-01]
Length = 353
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 122/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R I V + L P A
Sbjct: 65 CNLRRGIESLVSGDKVLWRPGAETLAG---ISGVVEAVETRSSIL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ +TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYSTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALL------------ 227
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ ED G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 228 --------PELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGDLIDSPGVREFGLWHLE 279
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 280 TDDVTKAYVE 289
>gi|225861801|ref|YP_002743310.1| ribosome-associated GTPase [Streptococcus pneumoniae Taiwan19F-14]
gi|298230180|ref|ZP_06963861.1| ribosome-associated GTPase [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255258|ref|ZP_06978844.1| ribosome-associated GTPase [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503754|ref|YP_003725694.1| GTP-binding protein [Streptococcus pneumoniae TCH8431/19A]
gi|387789027|ref|YP_006254095.1| ribosome-associated GTPase [Streptococcus pneumoniae ST556]
gi|417313443|ref|ZP_12100154.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA04375]
gi|418083805|ref|ZP_12720999.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44288]
gi|418085989|ref|ZP_12723166.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47281]
gi|418094786|ref|ZP_12731911.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA49138]
gi|418101459|ref|ZP_12738540.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
7286-06]
gi|418119459|ref|ZP_12756413.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA18523]
gi|418142515|ref|ZP_12779325.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13455]
gi|418151500|ref|ZP_12788244.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA14798]
gi|418153753|ref|ZP_12790489.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA16121]
gi|418165296|ref|ZP_12801961.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17371]
gi|418172138|ref|ZP_12808757.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA19451]
gi|418196647|ref|ZP_12833121.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47688]
gi|418198835|ref|ZP_12835290.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47778]
gi|418224196|ref|ZP_12850833.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
5185-06]
gi|418228479|ref|ZP_12855094.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
3063-00]
gi|419425935|ref|ZP_13966128.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
7533-05]
gi|419428046|ref|ZP_13968225.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
5652-06]
gi|419430227|ref|ZP_13970388.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11856]
gi|419437172|ref|ZP_13977249.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13499]
gi|419445504|ref|ZP_13985517.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA19923]
gi|419447656|ref|ZP_13987659.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
7879-04]
gi|419449775|ref|ZP_13989770.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
4075-00]
gi|419451911|ref|ZP_13991893.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP02]
gi|419502645|ref|ZP_14042325.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47628]
gi|419519703|ref|ZP_14059308.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA08825]
gi|419528952|ref|ZP_14068491.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17719]
gi|421288397|ref|ZP_15739157.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA58771]
gi|225727813|gb|ACO23664.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
Taiwan19F-14]
gi|298239349|gb|ADI70480.1| GTP-binding protein [Streptococcus pneumoniae TCH8431/19A]
gi|327389148|gb|EGE87494.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA04375]
gi|353753760|gb|EHD34377.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44288]
gi|353755171|gb|EHD35777.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47281]
gi|353763594|gb|EHD44147.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA49138]
gi|353769520|gb|EHD50037.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
7286-06]
gi|353789942|gb|EHD70330.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA18523]
gi|353804126|gb|EHD84412.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13455]
gi|353813438|gb|EHD93669.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA14798]
gi|353815777|gb|EHD95991.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA16121]
gi|353828015|gb|EHE08160.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17371]
gi|353834261|gb|EHE14365.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA19451]
gi|353859314|gb|EHE39266.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47688]
gi|353860593|gb|EHE40536.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47778]
gi|353877850|gb|EHE57690.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
5185-06]
gi|353879808|gb|EHE59630.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
3063-00]
gi|379138769|gb|AFC95560.1| ribosome-associated GTPase [Streptococcus pneumoniae ST556]
gi|379542113|gb|EHZ07277.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13499]
gi|379548923|gb|EHZ14036.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA11856]
gi|379562964|gb|EHZ27970.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA17719]
gi|379569925|gb|EHZ34891.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA19923]
gi|379598395|gb|EHZ63185.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47628]
gi|379612412|gb|EHZ77130.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
7879-04]
gi|379616655|gb|EHZ81349.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
5652-06]
gi|379617433|gb|EHZ82122.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
7533-05]
gi|379621641|gb|EHZ86284.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP02]
gi|379621773|gb|EHZ86415.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
4075-00]
gi|379639742|gb|EIA04282.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA08825]
gi|395885513|gb|EJG96536.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA58771]
Length = 292
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYQQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|421213905|ref|ZP_15670858.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070108]
gi|395578618|gb|EJG39133.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
2070108]
Length = 292
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYRQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N L P L + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKLV----------------PDL------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQDFPEIATV 233
>gi|47093056|ref|ZP_00230834.1| conserved hypothetical protein TIGR00157 [Listeria monocytogenes
str. 4b H7858]
gi|47018557|gb|EAL09312.1| conserved hypothetical protein TIGR00157 [Listeria monocytogenes
serotype 4b str. H7858]
Length = 225
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 28/195 (14%)
Query: 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTW 128
PPVAN+D +L+FS +P RFLV E I + ++K++L E E + +
Sbjct: 3 PPVANIDIAILVFSAVEPDFSTNLADRFLVAIEKEDIKPVICISKMDLASESEKEQIAVY 62
Query: 129 KSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDA 188
K GY+ + E +++ + +T VI G SGVGKS+L+N+L S
Sbjct: 63 KDIYEAIGYDVFVTNDEPD--KEAIKDYISGKTAVIAGQSGVGKSTLLNSLNSDLTL--- 117
Query: 189 ADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
+ E+S GRGKHTTRHV L+P+ G G++ADTPGF+
Sbjct: 118 -------------------KTAEISNALGRGKHTTRHVELMPI-GDGFVADTPGFSSIEW 157
Query: 249 LKVTKQSLAQTFPEV 263
+ ++L FPE+
Sbjct: 158 DDLQPETLQFCFPEM 172
>gi|338996992|ref|ZP_08635697.1| GTPase RsgA [Halomonas sp. TD01]
gi|338766065|gb|EGP20992.1| GTPase RsgA [Halomonas sp. TD01]
Length = 339
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 126/269 (46%), Gaps = 49/269 (18%)
Query: 11 SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDW---VDRRGMIENVFQRST 67
RT + D G + C +RA L + + GD+V+ W D G++ +R +
Sbjct: 54 GRTLEVRDADGTPVRCHLRANLDGL----VTGDRVI-----WRAGQDGSGVVVAREERDS 104
Query: 68 EI--------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVEL 119
+ L P AN+D LL++F++ +P P + R+LV AE+TGI L LNK +L
Sbjct: 105 VLKRPDPRGQLKPVAANIDQLLIVFAV-EPAPHPNLIDRYLVAAEATGIAPVLVLNKTDL 163
Query: 120 VDEE--VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
+ E+ L R + GY + + ++ GLD L Q+L +T+V VG SGVGKSSLI+
Sbjct: 164 LPEDGGKLGQLLERYRSLGYTVVRTTTANEAGLDELRQQLEGRTSVFVGQSGVGKSSLID 223
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG---- 233
L E R+G +S S +G HTT L +S
Sbjct: 224 LLLPD----------------------ETLRIGALSEDSRKGTHTTTTARLYAMSSDEVT 261
Query: 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G L D+PG + L+ + +Q + F E
Sbjct: 262 DGELIDSPGIREFGLIHLDEQEVTDGFIE 290
>gi|229526998|ref|ZP_04416394.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae
12129(1)]
gi|229335521|gb|EEO01002.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae
12129(1)]
Length = 353
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 65 CNLRRGIESLVSGDNVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELRELYTTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALL------------ 227
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ ED G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 228 --------PELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGNLIDSPGVREFGLWHLE 279
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 280 TDDVTKAYVE 289
>gi|360036977|ref|YP_004938740.1| ribosome-associated GTPase [Vibrio cholerae O1 str. 2010EL-1786]
gi|356648131|gb|AET28186.1| ribosome-associated GTPase [Vibrio cholerae O1 str. 2010EL-1786]
Length = 319
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 122/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 31 CNLRRGIESLVSGDNVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 86
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ +TW +
Sbjct: 87 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYSTWLNDY 145
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 146 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALL------------ 193
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ ED G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 194 --------PELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGDLIDSPGVREFGLWHLE 245
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 246 TDDVTKAYVE 255
>gi|269103614|ref|ZP_06156311.1| ribosome small subunit-stimulated GTPase EngC [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163512|gb|EEZ42008.1| ribosome small subunit-stimulated GTPase EngC [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 366
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 124/260 (47%), Gaps = 40/260 (15%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVV----VGSIDWVDRRGMIENVFQRSTEILDPP 73
D +E V R L++ R ++ GD+VV V ++ + G++E V +R + + P
Sbjct: 69 DIEDLETHKVHRCNLRRSIRSLVSGDRVVWRPGVEALQGI--AGVVEAVHERQSVLTRPD 126
Query: 74 --------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL 125
ANVD L+++ S P+L + R+L+ AE+ I + LNK++L+D+E
Sbjct: 127 YYDGVKAVAANVD-LIVIVSAILPELSLNIIDRYLIAAETVEIEPLIVLNKIDLLDKEQR 185
Query: 126 NTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSS 182
+ L + GY + S E+ G+D L Q L++ TT+ G SGVGKSS++N L
Sbjct: 186 QQVEETLSLYQDIGYNIRYVSTETGEGMDELKQDLKNHTTIFAGQSGVGKSSMVNTL--M 243
Query: 183 PHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPG 242
P D VG+VS SG G+HTT L GG L D+PG
Sbjct: 244 PEV--------------------DAEVGDVSENSGLGQHTTTAARLYHFEDGGDLIDSPG 283
Query: 243 FNQPSLLKVTKQSLAQTFPE 262
+ L + + + + F E
Sbjct: 284 VREFGLWHLEPEHVTKAFVE 303
>gi|417823470|ref|ZP_12470065.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HE48]
gi|340048509|gb|EGR09428.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HE48]
Length = 353
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 65 CNLRRGIESLVSGDNVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELRELYTTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALL------------ 227
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ ED G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 228 --------PELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGNLIDSPGVREFGLWHLE 279
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 280 TDDVTKAYVE 289
>gi|119776165|ref|YP_928905.1| ribosome-associated GTPase [Shewanella amazonensis SB2B]
gi|119768665|gb|ABM01236.1| ribosome small subunit-dependent GTPase A [Shewanella amazonensis
SB2B]
Length = 351
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 124/249 (49%), Gaps = 36/249 (14%)
Query: 27 VVRALLKKIKRRVLVGDKVVVGSI--DWVDRRGMIENVFQRSTEILDPPV--------AN 76
++R +++ + ++ GDKV++ D G++E V R++ + P + AN
Sbjct: 65 IIRCNIRRTIQSLVTGDKVIIRQALEDGSAIGGVVEAVHPRTSSLTRPDLYDGVKIIAAN 124
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLH 133
+D +L++ S+ P + R+LV +E TGI + LNK++L+++E + R
Sbjct: 125 IDQILIVSSV-VPAFTTQIIDRYLVASEDTGISPVIILNKIDLMNDEDRADIEAALGRYR 183
Query: 134 TWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
+ GY S +SK G+D++ L D+ +V VG SGVGKSS+INAL P A
Sbjct: 184 SLGYPVYEVSSKSKAGIDTVKALLNDKISVFVGQSGVGKSSMINALL--PDA-------- 233
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
+ GEVS SG G+HTT LL L GG L D+PG + +L +
Sbjct: 234 ------------ELLTGEVSEGSGLGQHTTTTARLLHLPSGGDLIDSPGVREFALWHLPP 281
Query: 254 QSLAQTFPE 262
++ F E
Sbjct: 282 DRVSWCFTE 290
>gi|336053905|ref|YP_004562192.1| ribosome biogenesis GTPase RsgA [Lactobacillus kefiranofaciens ZW3]
gi|333957282|gb|AEG40090.1| possible ribosome biogenesis GTPase RsgA [Lactobacillus
kefiranofaciens ZW3]
Length = 296
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 119/253 (47%), Gaps = 35/253 (13%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGM--IENVFQRSTEILDP 72
D TG+ + R + ++ K++ VGD+V + +D +GM + + R I P
Sbjct: 17 DVETTTGI-VRTRARGVFRQKKQKPAVGDRVEI----QIDDQGMSYLVKILPRLNRIGRP 71
Query: 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRL 132
VANV H+LL+ S +P L RFL + +T+ L+K +L++ E L K +L
Sbjct: 72 AVANVSHVLLVISAIEPDFSVELLDRFLTFFSWQRVRVTIYLSKTDLIEAEKLAKIKQKL 131
Query: 133 HTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
+ GY E + + +++Q DQ + G SG GKS+L+N L+ DA
Sbjct: 132 SYYQAIGYLVFTDYHEVQRQISTMIQ--DDQIWTLAGQSGAGKSTLLNHLK-----KDA- 183
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
+Q G +ST RGKHTTR V L L G G+LADTPGF+ L
Sbjct: 184 ----------------NQTTGAISTSLNRGKHTTRKVELFKL-GAGFLADTPGFSSIDLT 226
Query: 250 KVTKQSLAQTFPE 262
+ L F E
Sbjct: 227 LIKLNELCNYFVE 239
>gi|254292057|ref|ZP_04962834.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
AM-19226]
gi|297582246|ref|ZP_06944162.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae RC385]
gi|384423651|ref|YP_005633009.1| Ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae
LMA3984-4]
gi|150422043|gb|EDN14013.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
AM-19226]
gi|297533547|gb|EFH72392.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae RC385]
gi|327483204|gb|AEA77611.1| Ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae
LMA3984-4]
Length = 353
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 122/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 65 CNLRRGIESLVSGDNVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ +TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYSTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALL------------ 227
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ ED G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 228 --------PELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGNLIDSPGVREFGLWHLE 279
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 280 TDDVTKAYVE 289
>gi|268611646|ref|ZP_06145373.1| ribosome small subunit-dependent GTPase A [Ruminococcus
flavefaciens FD-1]
Length = 292
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 39/243 (16%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + GD+V + G+I + +R I+ PP+AN+D L+ + S
Sbjct: 29 CKARGVFRNKGISPCAGDRVTL-------ENGVISEICERKNSIIRPPLANLDQLIFVVS 81
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P L +F+ AE GI + + K +L D ++ S + G + +
Sbjct: 82 TCSPSPNFLILDKFIAIAEYKGITPVVVITKTDLGDSSEIHRIYSGI---GIDVIDVDYG 138
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
S ++++ + L + + G SG GKS+L+NA+ S+ +
Sbjct: 139 SDETIEAVRRLLAGKISAFTGNSGAGKSTLLNAVDSTLNIP------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF-----NQPSLLKVTKQSLAQTF 260
GE+S K GRG+HTTRH L L GGY+ADTPGF N+ +++ K+ LA F
Sbjct: 180 ---TGEISKKLGRGRHTTRHAELYKLKDGGYIADTPGFSTFDTNRYDIIR--KEELAGCF 234
Query: 261 PEV 263
E+
Sbjct: 235 REM 237
>gi|308048229|ref|YP_003911795.1| ribosome small subunit-dependent GTPase A [Ferrimonas balearica DSM
9799]
gi|307630419|gb|ADN74721.1| ribosome small subunit-dependent GTPase A [Ferrimonas balearica DSM
9799]
Length = 350
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 124/262 (47%), Gaps = 40/262 (15%)
Query: 14 SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTEILD 71
+D D G C +R + + +VGD V G+ G+IE V R +++
Sbjct: 53 ADVEDDQGEIFRCNLRRTINSL----VVGDAVAWRKGAEQLAGIAGVIEAVHPRRSQLAR 108
Query: 72 PP--------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
P AN+D +L++ ++ P+L + R+LV AE TGIP L LNKV+L+D+E
Sbjct: 109 PDYYDGLKVVAANIDQILVVSAV-VPELSSQIIDRYLVAAEDTGIPPVLVLNKVDLLDDE 167
Query: 124 VLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALR 180
+ L + GY S ++ G+ L L+D+ ++ VG SGVGKSS+IN L
Sbjct: 168 GFALVEEILEPYRDIGYPIYLVSSQTGEGMAELADCLKDKISIFVGQSGVGKSSMINQLL 227
Query: 181 SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADT 240
P A + G+VS+ SG G+HTT LL + GG L D+
Sbjct: 228 --PDA--------------------ELLTGDVSSNSGLGQHTTTTARLLHFTDGGDLIDS 265
Query: 241 PGFNQPSLLKVTKQSLAQTFPE 262
PG + +L + + + F E
Sbjct: 266 PGVREFALWHLAPERVTWGFKE 287
>gi|262273023|ref|ZP_06050842.1| ribosome small subunit-stimulated GTPase EngC [Grimontia hollisae
CIP 101886]
gi|262222933|gb|EEY74239.1| ribosome small subunit-stimulated GTPase EngC [Grimontia hollisae
CIP 101886]
Length = 350
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 126/261 (48%), Gaps = 44/261 (16%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVV----VGSIDWVDRRGMIENVFQRSTEI--- 69
+ +TGV C +R ++ + + GD VV V S+ + G++E V +R + +
Sbjct: 57 DSQTGVIHRCNLRRSIESL----VTGDNVVWRPGVESLQGI--AGVVEAVHERHSVLTRP 110
Query: 70 -----LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV 124
+ P ANVD ++++ ++ P+L + R+L+ E G + +NK++L+D+E
Sbjct: 111 DYYDGVKPVAANVDQVVIVSAI-LPELSTNIIDRYLIATEQVGFKPLIVINKIDLLDKEG 169
Query: 125 LNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
L K+ L + GY+ L S ++ G+D L L T++ VG SGVGKSSL+NAL
Sbjct: 170 LERIKNILTLYTDIGYDVLMVSQKTGEGIDDLKAYLAGSTSIFVGQSGVGKSSLVNALLP 229
Query: 182 SPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241
+A GEVS SG G+HTT L GGG L D+P
Sbjct: 230 EVNAD----------------------TGEVSENSGLGQHTTTTARLYHFPGGGDLIDSP 267
Query: 242 GFNQPSLLKVTKQSLAQTFPE 262
G + L + + + Q F E
Sbjct: 268 GVREFGLWHLEPEQVTQGFKE 288
>gi|257899953|ref|ZP_05679606.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|257837865|gb|EEV62939.1| conserved hypothetical protein [Enterococcus faecium Com15]
Length = 299
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 114/236 (48%), Gaps = 30/236 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R + K LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +
Sbjct: 30 RGNFRNRKITPLVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVE 87
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESK 147
P L RFLV E I + L K +L D+ + + K GY + V +
Sbjct: 88 PAFSYNLLDRFLVTLEYESIEPLIFLTKTDLSDDPKTIEEIKQTYTKIGYPVI---VPNH 144
Query: 148 LG-LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
G L++ ++ +V +G SG GKS+L+N + SP + A
Sbjct: 145 AGDTTELIRYFPERLSVFMGQSGAGKSTLLNQI--SPELNLAT----------------- 185
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S GRG+HTTRHV LLP+ GG +ADTPGF+ L + L + FPE
Sbjct: 186 ---GEISDALGRGRHTTRHVELLPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPE 237
>gi|262163600|ref|ZP_06031343.1| ribosome small subunit-stimulated GTPase EngC [Vibrio mimicus
VM223]
gi|262027967|gb|EEY46629.1| ribosome small subunit-stimulated GTPase EngC [Vibrio mimicus
VM223]
Length = 353
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 125/261 (47%), Gaps = 28/261 (10%)
Query: 5 VQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQ 64
++ E CN + G+E L +L + L G + G ++ V+ R + V
Sbjct: 54 IEDPETGEIHRCNLRRGIESLVSGDKVLWRPGAETLAG---ISGVVEAVETRSSVL-VRP 109
Query: 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV 124
+ L P ANVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+
Sbjct: 110 DYYDGLKPVAANVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPEL 168
Query: 125 ---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
TW + GYE L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 169 REQYTTWLNDYRAIGYEVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNAL-- 226
Query: 182 SPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241
+++ E G +S SG G+HTT L + GG L D+P
Sbjct: 227 ------LPELEEHVEE------------GAISETSGLGQHTTTAARLYHIPSGGDLIDSP 268
Query: 242 GFNQPSLLKVTKQSLAQTFPE 262
G + L + + + F E
Sbjct: 269 GVREFGLWHLETDDVTKAFVE 289
>gi|256419475|ref|YP_003120128.1| ribosome-associated GTPase [Chitinophaga pinensis DSM 2588]
gi|256034383|gb|ACU57927.1| ribosome small subunit-dependent GTPase A [Chitinophaga pinensis
DSM 2588]
Length = 311
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 114/240 (47%), Gaps = 37/240 (15%)
Query: 39 VLVGD--KVVVGSIDWVDRRGMIENVFQRSTEILDPP----------VANVDHLLLLFSM 86
+ VGD ++V D MI + +R I+ AN+D +L+ ++
Sbjct: 43 IAVGDVVEIVREGGDATANNAMITEISKRHNYIVRSSPHKKNQKHIVAANMDQAMLICTV 102
Query: 87 DQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTW---KSRLHTWGYEPLFCS 143
+P+ + RFLV A + IP+ L NK ++ E+ L+ + ++ GY+ L S
Sbjct: 103 KEPRTSNGFMDRFLVTAAAYHIPVILVFNKKDIYKEKDLDKFAELQALYEDIGYKVLLVS 162
Query: 144 VESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203
E+ G+D L ++D+TT++ G SGVGKSSLIN L P L
Sbjct: 163 AETTDGIDLLKAEMKDKTTLMSGHSGVGKSSLINRLL----------------PGL---- 202
Query: 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
D R VS SG+G HTT + + L GG L DTPG + ++ +TK L+ F E+
Sbjct: 203 --DLRTTAVSGWSGKGLHTTTYAEMYDLPDGGKLIDTPGVREFGIVDITKPELSHYFLEM 260
>gi|430824317|ref|ZP_19442881.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0120]
gi|430867723|ref|ZP_19482621.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1574]
gi|430441332|gb|ELA51447.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E0120]
gi|430550110|gb|ELA89919.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E1574]
Length = 299
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 115/236 (48%), Gaps = 30/236 (12%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R + K LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +
Sbjct: 30 RGNFRNRKITPLVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVE 87
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESK 147
P L RFLV E I + L K +L D+ E + K GY P+ V +
Sbjct: 88 PAFSYNLLDRFLVTLEYESIEPIIFLTKTDLSDDPEKIEEIKQIYTKIGY-PVI--VPNH 144
Query: 148 LG-LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
G L++ ++ +V +G SG GKS+L+N + SP + A
Sbjct: 145 TGDTTELIRYFPERLSVFMGQSGAGKSTLLNQI--SPELNLAT----------------- 185
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GE+S GRG+HTTRHV L+P+ GG +ADTPGF+ L + L + FPE
Sbjct: 186 ---GEISDALGRGRHTTRHVELIPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPE 237
>gi|421308188|ref|ZP_15758828.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA60132]
gi|395906362|gb|EJH17261.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA60132]
Length = 292
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 106/223 (47%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ + E LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYRQTYGDIGYDFVTSKKE-------LLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N L P L + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKLV----------------PDL------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|153802849|ref|ZP_01957435.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae MZO-3]
gi|124121604|gb|EAY40347.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae MZO-3]
Length = 353
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 122/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 65 CNLRRGIESLVSGDNVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ +TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYSTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALL------------ 227
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ ED G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 228 --------PELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGNLIDSPGVREFGLWHLE 279
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 280 TDDVTKAYVE 289
>gi|258620690|ref|ZP_05715725.1| ribosome small subunit-dependent GTPase A [Vibrio mimicus VM573]
gi|424811012|ref|ZP_18236343.1| ribosome small subunit-dependent GTPase A [Vibrio mimicus SX-4]
gi|258586888|gb|EEW11602.1| ribosome small subunit-dependent GTPase A [Vibrio mimicus VM573]
gi|342321894|gb|EGU17691.1| ribosome small subunit-dependent GTPase A [Vibrio mimicus SX-4]
Length = 353
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 125/261 (47%), Gaps = 28/261 (10%)
Query: 5 VQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQ 64
++ E CN + G+E L +L + L G + G ++ V+ R + V
Sbjct: 54 IENPETGEIHRCNLRRGIESLVSGDKVLWRPGAETLAG---ISGVVEAVETRSSVL-VRP 109
Query: 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV 124
+ L P ANVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+
Sbjct: 110 DYYDGLKPVAANVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPEL 168
Query: 125 ---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
TW + GYE L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 169 REQYTTWLNDYRAIGYEVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNAL-- 226
Query: 182 SPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241
+++ E G +S SG G+HTT L + GG L D+P
Sbjct: 227 ------LPELEEHVEE------------GAISETSGLGQHTTTAARLYHIPSGGDLIDSP 268
Query: 242 GFNQPSLLKVTKQSLAQTFPE 262
G + L + + + F E
Sbjct: 269 GVREFGLWHLETDDVTKAFVE 289
>gi|193212055|ref|YP_001998008.1| ribosome small subunit-dependent GTPase A [Chlorobaculum parvum
NCIB 8327]
gi|254766356|sp|B3QL20.1|RSGA_CHLP8 RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|193085532|gb|ACF10808.1| ribosome small subunit-dependent GTPase A [Chlorobaculum parvum
NCIB 8327]
Length = 311
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 22/188 (11%)
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D ++L+ S D P + R+LV AES +PL + +NK++L +E ++
Sbjct: 97 ANIDQIVLITSFDDPPFNSRLVDRYLVFAESEHLPLLIVVNKIDLDEEGMVEEDLEVYRN 156
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
S E G++ L + LRD+ + G SGVGKS+LIN L
Sbjct: 157 LDCNICLVSAEDGRGIEELRELLRDRLSAFSGHSGVGKSTLINLLVGR------------ 204
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
E+ R E S K+G+G HTT ++ L GGGY+ DTPG + +L +T++
Sbjct: 205 ----------EELRTAETSGKTGKGVHTTTSSAMFQLPGGGYVIDTPGIREFNLAGITRE 254
Query: 255 SLAQTFPE 262
+L + E
Sbjct: 255 NLRFYYTE 262
>gi|182684918|ref|YP_001836665.1| ribosome-associated GTPase [Streptococcus pneumoniae CGSP14]
gi|303254093|ref|ZP_07340208.1| ribosome-associated GTPase [Streptococcus pneumoniae BS455]
gi|303260357|ref|ZP_07346327.1| ribosome-associated GTPase [Streptococcus pneumoniae SP-BS293]
gi|303262505|ref|ZP_07348447.1| ribosome-associated GTPase [Streptococcus pneumoniae SP14-BS292]
gi|303265136|ref|ZP_07351049.1| ribosome-associated GTPase [Streptococcus pneumoniae BS397]
gi|303266002|ref|ZP_07351897.1| ribosome-associated GTPase [Streptococcus pneumoniae BS457]
gi|303268066|ref|ZP_07353867.1| ribosome-associated GTPase [Streptococcus pneumoniae BS458]
gi|387760072|ref|YP_006067050.1| GTPase EngC [Streptococcus pneumoniae INV200]
gi|418140328|ref|ZP_12777151.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13338]
gi|418181334|ref|ZP_12817902.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41688]
gi|419515476|ref|ZP_14055100.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
England14-9]
gi|421296812|ref|ZP_15747518.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA58581]
gi|182630252|gb|ACB91200.1| ribosome-associated GTPase [Streptococcus pneumoniae CGSP14]
gi|301802661|emb|CBW35427.1| probable GTPase EngC [Streptococcus pneumoniae INV200]
gi|302598926|gb|EFL65957.1| ribosome-associated GTPase [Streptococcus pneumoniae BS455]
gi|302636405|gb|EFL66898.1| ribosome-associated GTPase [Streptococcus pneumoniae SP14-BS292]
gi|302638523|gb|EFL68988.1| ribosome-associated GTPase [Streptococcus pneumoniae SP-BS293]
gi|302642426|gb|EFL72772.1| ribosome-associated GTPase [Streptococcus pneumoniae BS458]
gi|302644443|gb|EFL74695.1| ribosome-associated GTPase [Streptococcus pneumoniae BS457]
gi|302645353|gb|EFL75587.1| ribosome-associated GTPase [Streptococcus pneumoniae BS397]
gi|353842160|gb|EHE22208.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41688]
gi|353904578|gb|EHE80046.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA13338]
gi|379635163|gb|EHZ99723.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
England14-9]
gi|395893798|gb|EJH04781.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA58581]
Length = 292
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 106/223 (47%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ + E LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDRGELDFYRQTYGDIGYDFVTSKKE-------LLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N L P L + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKLV----------------PDL------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|297588343|ref|ZP_06946986.1| ribosome small subunit-dependent GTPase A [Finegoldia magna ATCC
53516]
gi|297573716|gb|EFH92437.1| ribosome small subunit-dependent GTPase A [Finegoldia magna ATCC
53516]
Length = 292
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 25/204 (12%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV I+ + G I + RS + P V+N+D +L S+ P + L ++
Sbjct: 41 VVGDKV---DINVENGLGFILKIHPRSVLLHRPEVSNIDKCFVLSSIKSPNINLMLLDKY 97
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
L+ E I + NK +LV E+ + GY+ +F S ES + + LL ++
Sbjct: 98 LLMIEKNNIDCVIVFNKSDLVSEDEKKFYADIYRNIGYKVIFNSNESSITNEELLNEFKN 157
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
+ ++GPSG GKSS + L + ED G++S K+ RG
Sbjct: 158 HISCVIGPSGAGKSSTLKKLFPN----------------------EDFVSGKISDKTQRG 195
Query: 220 KHTTRHVSLLPLSGGGYLADTPGF 243
K TTRH+ + + Y+ DTPGF
Sbjct: 196 KQTTRHIEIKMVDDNTYVLDTPGF 219
>gi|418087663|ref|ZP_12724830.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47033]
gi|418203212|ref|ZP_12839638.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA52306]
gi|419454356|ref|ZP_13994319.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP04]
gi|421286222|ref|ZP_15736996.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA60190]
gi|353757064|gb|EHD37661.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47033]
gi|353866216|gb|EHE46119.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA52306]
gi|379630797|gb|EHZ95377.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
EU-NP04]
gi|395885057|gb|EJG96085.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA60190]
Length = 292
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L+ D L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLEDGGELDFYQQTYGDIGYD----FVTSK---EELLPLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N + A D+ + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKI--------APDL--------------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|227431994|ref|ZP_03914014.1| ribosome-associated GTP-binding protein [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227352279|gb|EEJ42485.1| ribosome-associated GTP-binding protein [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 299
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 31/238 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K K++ LVGD V + + G I + +R ++ PP+AN+D +++ +
Sbjct: 32 ARGEFRKSKQKPLVGDFV---DFESENDEGFIWAIHERENFLVRPPIANIDIAVIVTAAK 88
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFCSV 144
+P P L R LV E+ + + +K++L+++ E +N + + GY+ +F
Sbjct: 89 EPDFAPNLLDRQLVALEAANVRPLIYFSKMDLLEKSEHEKINHVANYYQSIGYDVIFS-- 146
Query: 145 ESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204
+SK ++L L+D +V +G +G GKS+L+N L P LG +
Sbjct: 147 DSKSAFEALKIMLKDHVSVFMGQTGAGKSTLLNHL----------------SPQLGLE-- 188
Query: 205 EDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GEVS RGKHTTR V+L+ + +ADTPGF+ + + L FPE
Sbjct: 189 ----TGEVSKALSRGKHTTRQVTLIEVD-EALIADTPGFSSYEVFDFPVEELDDYFPE 241
>gi|449143314|ref|ZP_21774152.1| GTPase RsgA [Vibrio mimicus CAIM 602]
gi|449081054|gb|EMB51950.1| GTPase RsgA [Vibrio mimicus CAIM 602]
Length = 353
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 125/261 (47%), Gaps = 28/261 (10%)
Query: 5 VQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQ 64
++ E CN + G+E L +L + L G + G ++ V+ R + V
Sbjct: 54 IEDPETGEIHRCNLRRGIESLVSGDKVLWRPGAETLAG---ISGVVEAVETRSSVL-VRP 109
Query: 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV 124
+ L P ANVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+
Sbjct: 110 DYYDGLKPVAANVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPEL 168
Query: 125 ---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
TW + GYE L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 169 REQYTTWLNDYRAIGYEVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNAL-- 226
Query: 182 SPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241
+++ E G +S SG G+HTT L + GG L D+P
Sbjct: 227 ------LPELEEHVEE------------GAISETSGLGQHTTTAARLYHIPSGGDLIDSP 268
Query: 242 GFNQPSLLKVTKQSLAQTFPE 262
G + L + + + F E
Sbjct: 269 GVREFGLWHLETDDVTKAFVE 289
>gi|431744822|ref|ZP_19533688.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2071]
gi|430604982|gb|ELB42404.1| ribosome small subunit-dependent GTPase A [Enterococcus faecium
E2071]
Length = 299
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 112/225 (49%), Gaps = 30/225 (13%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
LVGD+V+ S + D G + + R +++ PPV NVD +++ S+ +P L RF
Sbjct: 41 LVGDQVIFESENQTD--GYLLEILPRKNQLVRPPVTNVDLGIIVTSIVEPAFSYNLLDRF 98
Query: 100 LVEAESTGIPLTLALNKVELVDE-EVLNTWKSRLHTWGYEPLFCSVESKLG-LDSLLQRL 157
LV E I + L K +L D+ E + K GY P+ V + G L++
Sbjct: 99 LVTLEYESIEPIIFLTKTDLSDDPEKIEEIKQIYTKIGY-PVI--VPNHTGDTTELIRYF 155
Query: 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217
++ +V +G SG GKS+L+N + SP + A GE+S G
Sbjct: 156 PERLSVFMGQSGAGKSTLLNQI--SPELNLAT--------------------GEISDALG 193
Query: 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RG+HTTRHV L+P+ GG +ADTPGF+ L + L + FPE
Sbjct: 194 RGRHTTRHVELIPIY-GGLVADTPGFSSIDFLTIEAGELPRQFPE 237
>gi|424921109|ref|ZP_18344470.1| ribosome small subunit-dependent GTPase A [Pseudomonas fluorescens
R124]
gi|404302269|gb|EJZ56231.1| ribosome small subunit-dependent GTPase A [Pseudomonas fluorescens
R124]
Length = 343
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 121/261 (46%), Gaps = 50/261 (19%)
Query: 18 DKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRR---GMIENVFQRSTEI----- 69
++ G C +RA L + + GD+VV W G+I RSTE+
Sbjct: 65 EQAGQVFRCHLRANLPAL----VTGDRVV-----WRAGNQGIGVIVAQLPRSTELCRPDS 115
Query: 70 ---LDPPVANVDHLLLLFSMDQPKLEPFA--LTRFLVEAESTGIPLTLALNKVELVDEE- 123
L P ANVD ++++F+ P EP A + R+LV AE GI L LNK +L+DE+
Sbjct: 116 RGQLKPVAANVDMIVIVFA---PLPEPHANLIDRYLVAAEHAGIRPLLLLNKFDLIDEQN 172
Query: 124 --VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
LN + T GY L S G++ L ++L + +V VG SGVGKSSL+N+L
Sbjct: 173 APALNALLAVYRTLGYPVLEVSAHHGNGMEQLQKQLDGRISVFVGQSGVGKSSLVNSLLP 232
Query: 182 SPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241
+ RVG +S SG+G HTT L GGG L D+P
Sbjct: 233 EV----------------------ETRVGPLSELSGQGTHTTTTARLFHFPGGGELIDSP 270
Query: 242 GFNQPSLLKVTKQSLAQTFPE 262
G + L V++ + F E
Sbjct: 271 GIREFGLGHVSRADVEAGFIE 291
>gi|322386717|ref|ZP_08060341.1| GTP-binding protein [Streptococcus cristatus ATCC 51100]
gi|417921398|ref|ZP_12564889.1| ribosome small subunit-dependent GTPase A [Streptococcus cristatus
ATCC 51100]
gi|321268999|gb|EFX51935.1| GTP-binding protein [Streptococcus cristatus ATCC 51100]
gi|342834081|gb|EGU68356.1| ribosome small subunit-dependent GTPase A [Streptococcus cristatus
ATCC 51100]
Length = 292
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 113/240 (47%), Gaps = 33/240 (13%)
Query: 28 VRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMD 87
R +K + VGD V + D G I + +R ++ PP+ N+D +++ S
Sbjct: 26 ARGNFRKKGQTPYVGDHVEFSADK--DSEGYILKIAERKNSLVRPPIVNIDQAVVIMSAK 83
Query: 88 QPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVES 146
+P L RFLV E GI + L+K++L+ DE L+T+ GY+ + SVE
Sbjct: 84 EPDFNANLLDRFLVLLEHKGIHPLIYLSKLDLLEDEASLDTYVQAYQRIGYQ-VVRSVE- 141
Query: 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206
LL L + TV +G +GVGKS+L+N + A D+
Sbjct: 142 -----DLLPLLTGKITVFMGQTGVGKSTLLNKI--------APDL--------------Q 174
Query: 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
GE+S GRG+HTTR VS L+GG +ADTPGF+ + L FPE+ +
Sbjct: 175 LETGEISESLGRGRHTTRAVSFYNLNGGK-IADTPGFSSLDYEVDKGEDLNAAFPEIAEI 233
>gi|261867656|ref|YP_003255578.1| ribosome-associated GTPase [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|415767762|ref|ZP_11483392.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|416107818|ref|ZP_11590737.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444345687|ref|ZP_21153694.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261412988|gb|ACX82359.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348004855|gb|EGY45347.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348658306|gb|EGY75877.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|443542550|gb|ELT52871.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 346
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 124/269 (46%), Gaps = 40/269 (14%)
Query: 11 SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTE 68
+R +D ++ G C +R L V+VGD+V+ G+ G+IE V R E
Sbjct: 50 ARHADVENERGEIFRCNLRRTLAG----VVVGDRVIWRQGNEQLQGVSGVIEGVHPRQNE 105
Query: 69 ILDPP--------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
I P AN+D ++++ S+ P L + R+LV E I + LNK +++
Sbjct: 106 ISRPDYYDGMKVIAANIDRIIIISSV-LPSLSLNIIDRYLVVCEEAKIEPIIVLNKADML 164
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
E S+L + GY+ L S +S L+ L L D ++ VG SGVGKSSLIN
Sbjct: 165 TELQWQEVDSQLEIYRKIGYQTLMVSAQSGKNLEKLTALLSDGVSIFVGQSGVGKSSLIN 224
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
A+ PH + +VGE+S+ SG G+HTT L L GG L
Sbjct: 225 AV--LPHV--------------------EAQVGEISSTSGLGQHTTTSSRLYHLPQGGSL 262
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
D+PG + L + + + + + E V
Sbjct: 263 IDSPGIREFGLWHLEDEQITRGYREFQTV 291
>gi|365967448|ref|YP_004949010.1| ribosome-associated GTPase [Aggregatibacter actinomycetemcomitans
ANH9381]
gi|416076628|ref|ZP_11585625.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444344966|ref|ZP_21153090.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348004768|gb|EGY45265.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|365746361|gb|AEW77266.1| ribosome-associated GTPase [Aggregatibacter actinomycetemcomitans
ANH9381]
gi|443542440|gb|ELT52769.1| ribosome small subunit-dependent GTPase A [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 346
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 124/269 (46%), Gaps = 40/269 (14%)
Query: 11 SRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTE 68
+R +D ++ G C +R L V+VGD+V+ G+ G+IE V R E
Sbjct: 50 ARHADVENERGEIFRCNLRRTLAG----VVVGDRVIWRQGNEQLQGVSGVIEGVHPRQNE 105
Query: 69 ILDPP--------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV 120
I P AN+D ++++ S+ P L + R+LV E I + LNK +++
Sbjct: 106 ISRPDYYDGMKVIAANIDRIIIISSV-LPSLSLNIIDRYLVVCEEAKIEPIIVLNKADML 164
Query: 121 DEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLIN 177
E S+L + GY+ L S +S L+ L L D ++ VG SGVGKSSLIN
Sbjct: 165 TELQWQEVDSQLEIYRKIGYQTLMVSAQSGKNLEKLTALLSDGVSIFVGQSGVGKSSLIN 224
Query: 178 ALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237
A+ PH + +VGE+S+ SG G+HTT L L GG L
Sbjct: 225 AV--LPHV--------------------EAQVGEISSTSGLGQHTTTSSRLYHLPQGGSL 262
Query: 238 ADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
D+PG + L + + + + + E V
Sbjct: 263 IDSPGIREFGLWHLEDEQITRGYREFQTV 291
>gi|33152163|ref|NP_873516.1| ribosome-associated GTPase [Haemophilus ducreyi 35000HP]
gi|38257397|sp|Q7VMF1.1|RSGA_HAEDU RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|33148385|gb|AAP95905.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 342
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 118/249 (47%), Gaps = 36/249 (14%)
Query: 27 VVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENVFQRSTEILDPP--------VAN 76
++R L++ + V+VGD V GS G+IE V+ R E+ P +N
Sbjct: 59 IIRCNLRRTLKNVVVGDHVSWRKGSQQLQGISGVIEAVYPRHNELSRPDYYDGIKVMASN 118
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
+D ++++ ++ P L + R+LV E+ GIP + LNK++L+ E+ + +L +
Sbjct: 119 IDQIIIISAV-MPVLSLNIIDRYLVICENAGIPALIVLNKIDLLSEQERQHVQQQLAIYE 177
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY+ L S + +D L + L + T++ VG SGVGKSSLIN L HA
Sbjct: 178 NIGYQTLCLSANTGENMDKLDRYLANGTSIFVGQSGVGKSSLINQLLPEVHAI------- 230
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
G +S SG G+HTT L L GG L D+PG + L +T
Sbjct: 231 ---------------TGAISDISGLGQHTTTASRLYHLPQGGNLIDSPGIREFGLWHLTP 275
Query: 254 QSLAQTFPE 262
+ + + E
Sbjct: 276 EQITLGYCE 284
>gi|421350199|ref|ZP_15800566.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HE-25]
gi|395954921|gb|EJH65527.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HE-25]
Length = 353
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 65 CNLRRGIESLVSGDNVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYTTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALL------------ 227
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ ED G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 228 --------PELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGNLIDSPGVREFGLWHLE 279
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 280 TDDVTKAYVE 289
>gi|417819227|ref|ZP_12465845.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HE39]
gi|419828915|ref|ZP_14352405.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-1A2]
gi|419831697|ref|ZP_14355165.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-61A2]
gi|422916075|ref|ZP_16950421.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-02A1]
gi|423814284|ref|ZP_17715026.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-55C2]
gi|423847510|ref|ZP_17718826.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-59A1]
gi|423878679|ref|ZP_17722419.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-60A1]
gi|423945776|ref|ZP_17733289.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HE-40]
gi|423974960|ref|ZP_17736837.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HE-46]
gi|423996495|ref|ZP_17739766.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-02C1]
gi|424015195|ref|ZP_17755047.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-55B2]
gi|424018308|ref|ZP_17758115.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-59B1]
gi|424623699|ref|ZP_18062181.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-50A1]
gi|424628258|ref|ZP_18066571.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-51A1]
gi|424632212|ref|ZP_18070334.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-52A1]
gi|424635299|ref|ZP_18073325.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-55A1]
gi|424639091|ref|ZP_18076993.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-56A1]
gi|424647374|ref|ZP_18085056.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-57A1]
gi|443526228|ref|ZP_21092319.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-78A1]
gi|340042757|gb|EGR03721.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HE39]
gi|341641196|gb|EGS65754.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-02A1]
gi|408016570|gb|EKG54113.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-50A1]
gi|408021968|gb|EKG59198.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-52A1]
gi|408027942|gb|EKG64879.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-56A1]
gi|408027994|gb|EKG64924.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-55A1]
gi|408037702|gb|EKG74084.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-57A1]
gi|408059512|gb|EKG94270.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-51A1]
gi|408622512|gb|EKK95495.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-1A2]
gi|408637015|gb|EKL09119.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-55C2]
gi|408644417|gb|EKL16107.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-60A1]
gi|408645519|gb|EKL17166.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-59A1]
gi|408652346|gb|EKL23566.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-61A2]
gi|408662239|gb|EKL33201.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HE-40]
gi|408666336|gb|EKL37129.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HE-46]
gi|408855089|gb|EKL94822.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-02C1]
gi|408862277|gb|EKM01807.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-55B2]
gi|408871073|gb|EKM10333.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-59B1]
gi|443455437|gb|ELT19213.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-78A1]
Length = 353
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 65 CNLRRGIESLVSGDNVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELRELYTTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALL------------ 227
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ ED G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 228 --------PELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGDLIDSPGVREFGLWHLE 279
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 280 TDDVTKAYVE 289
>gi|258624476|ref|ZP_05719422.1| ribosome small subunit-dependent GTPase A [Vibrio mimicus VM603]
gi|258583225|gb|EEW08028.1| ribosome small subunit-dependent GTPase A [Vibrio mimicus VM603]
Length = 353
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 125/261 (47%), Gaps = 28/261 (10%)
Query: 5 VQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQ 64
++ E CN + G+E L +L + L G + G ++ V+ R + V
Sbjct: 54 IEDPETGEIHRCNLRRGIESLVSGDKVLWRPGAETLAG---ISGVVEAVETRSSVL-VRP 109
Query: 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV 124
+ L P ANVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+
Sbjct: 110 DYYDGLKPVAANVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPEL 168
Query: 125 ---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRS 181
TW + GYE L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 169 REQYTTWLNDYRAIGYEVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNAL-- 226
Query: 182 SPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241
+++ E G +S SG G+HTT L + GG L D+P
Sbjct: 227 ------LPELEEHVEE------------GAISETSGLGQHTTTAARLYHIPSGGDLIDSP 268
Query: 242 GFNQPSLLKVTKQSLAQTFPE 262
G + L + + + F E
Sbjct: 269 GVREFGLWHLETDDVTKAFVE 289
>gi|374338767|ref|YP_005095484.1| ribosome small subunit-stimulated GTPase EngC [Streptococcus
macedonicus ACA-DC 198]
gi|372284884|emb|CCF03192.1| Ribosome small subunit-stimulated GTPase EngC [Streptococcus
macedonicus ACA-DC 198]
Length = 290
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 116/246 (47%), Gaps = 37/246 (15%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
GV R +K + VGD V + D + G I + R ++ PP+ N+D
Sbjct: 19 GVIYQTRARGNFRKKGQTPYVGDFVEFSADDHSE--GYILAIHDRKNSLVRPPIVNIDQA 76
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGY 137
+++ S +P L RFLV E I + ++K++LV DE + T + + GY
Sbjct: 77 VVIMSAKEPDFNANLLDRFLVLLEHKAIEPIVYISKMDLVTTPDE--IRTIQRQYQEIGY 134
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
+ FC+ L+ LL L D+ TV +G +GVGKS+L+N + P
Sbjct: 135 Q--FCT-----SLEELLPLLTDKVTVFIGQTGVGKSTLLNKI----------------AP 171
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
L + GE+S GRG+HTTR VS ++GG +ADTPGF+ + L
Sbjct: 172 ELKLE------TGEISDSLGRGRHTTRAVSFYNVNGGK-IADTPGFSSLDYEITNAEDLN 224
Query: 258 QTFPEV 263
+ FPE+
Sbjct: 225 EAFPEL 230
>gi|227484658|ref|ZP_03914974.1| possible GTP-binding protein EngC [Anaerococcus lactolyticus ATCC
51172]
gi|227237378|gb|EEI87393.1| possible GTP-binding protein EngC [Anaerococcus lactolyticus ATCC
51172]
Length = 289
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 25/212 (11%)
Query: 37 RRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFAL 96
++ LVGD V + ++ D + I + R EI P +AN+D LL+ +++ P L + L
Sbjct: 35 KKPLVGDNVEIEILE--DDKAYITKLLARKNEIKRPNIANIDQLLVFITINDPPLNLYNL 92
Query: 97 TRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156
++L E I +T+ L K++L E + GYE + + + +
Sbjct: 93 DKYLAMCEYLNISVTIMLTKIDLAPCEKVEEISGIYKNIGYEVILIDNYKDFPQEKIREI 152
Query: 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216
L+ +T+ + G SGVGKS+ ++ L +D E +G++S KS
Sbjct: 153 LKGKTSAVSGASGVGKSTFLSNL-----------IDAEIE------------IGDISQKS 189
Query: 217 GRGKHTTRHVSLLPLSGGGYLADTPGFNQPSL 248
RGK+TTRH + L+ ++ DTPGF+ L
Sbjct: 190 KRGKNTTRHTEIFKLAKDTFIFDTPGFDSFDL 221
>gi|229512382|ref|ZP_04401857.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae TMA
21]
gi|229350597|gb|EEO15542.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae TMA
21]
Length = 353
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 122/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 65 CNLRRGIESLVSGDNVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ +TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYSTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALL------------ 227
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ ED G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 228 --------PELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGDLIDSPGVREFGLWHLE 279
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 280 TDDVTKAYVE 289
>gi|380696911|ref|ZP_09861770.1| GTPase RsgA [Bacteroides faecis MAJ27]
Length = 310
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 94/196 (47%), Gaps = 25/196 (12%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLH 133
AN+D +L+ +++ P+ + RFL AE+ +P+ L NKV+ DE+ L+ + ++
Sbjct: 85 AANLDQCMLVVTINYPETSTIFIDRFLASAEAYRVPVKLVFNKVDAYDEDELHYLDALIN 144
Query: 134 TW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
+ GY S + G+D++ + L + T+ G SGVGKS+LINA+
Sbjct: 145 LYTHIGYPCFKVSAKKGTGVDTIKKELEGKITLFSGHSGVGKSTLINAILPGI------- 197
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
+ + GE+ST +G HTT + + G GY+ DTPG
Sbjct: 198 ---------------ETKTGEISTYHNKGMHTTTFSEMFSVDGDGYIIDTPGIKGFGTFD 242
Query: 251 VTKQSLAQTFPEVCAV 266
+ ++ + FPE+ V
Sbjct: 243 MEEEEIGHYFPEIFKV 258
>gi|168484283|ref|ZP_02709235.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
CDC1873-00]
gi|417697153|ref|ZP_12346330.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47368]
gi|418092587|ref|ZP_12729726.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44452]
gi|418110958|ref|ZP_12747976.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA49447]
gi|418176774|ref|ZP_12813364.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41437]
gi|418219701|ref|ZP_12846365.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NP127]
gi|418222016|ref|ZP_12848668.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47751]
gi|418239498|ref|ZP_12866048.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419423781|ref|ZP_13963993.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA43264]
gi|419460812|ref|ZP_14000738.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA02270]
gi|419463112|ref|ZP_14003014.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA02714]
gi|419489717|ref|ZP_14029465.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44386]
gi|172042505|gb|EDT50551.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
CDC1873-00]
gi|332199409|gb|EGJ13486.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47368]
gi|353762387|gb|EHD42947.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44452]
gi|353781130|gb|EHD61579.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA49447]
gi|353840400|gb|EHE20466.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41437]
gi|353872793|gb|EHE52656.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NP127]
gi|353874064|gb|EHE53922.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA47751]
gi|353891882|gb|EHE71633.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379529571|gb|EHY94815.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA02270]
gi|379529645|gb|EHY94888.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA02714]
gi|379585225|gb|EHZ50083.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA43264]
gi|379585816|gb|EHZ50671.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA44386]
Length = 292
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 108/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L++ L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLENRGELDFYRQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N L P L + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKLV----------------PDL------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|320155080|ref|YP_004187459.1| ribosome small subunit-stimulated GTPase EngC [Vibrio vulnificus
MO6-24/O]
gi|319930392|gb|ADV85256.1| ribosome small subunit-stimulated GTPase EngC [Vibrio vulnificus
MO6-24/O]
Length = 352
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 50/271 (18%)
Query: 5 VQQSEPSRTSDCNDKTGVELLCVVRALLKKIKRRVLVGDKVV--VGSIDWVDRRGMIENV 62
++ +E CN + G+E L + GDKV+ G G++E V
Sbjct: 55 IEDAETGLIERCNLRRGIESL--------------VSGDKVIWRKGLESMAGISGVVEAV 100
Query: 63 FQRSTEI--------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLAL 114
R++ + L P AN+D ++++ S+ P+L + R+L+ AE+ GI L L
Sbjct: 101 EPRTSVLTRPDYYDGLKPVAANIDQMVIVSSV-LPELSLNIIDRYLIAAETLGIEPLLVL 159
Query: 115 NKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVG 171
NK++L+ E L T++ L + GY+ L+ S S G+ L +L+D+ + VG SGVG
Sbjct: 160 NKIDLLQEAELATYREWLADYEKIGYKILYVSKRSGAGISELEAQLQDRINIFVGQSGVG 219
Query: 172 KSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL 231
KSSL+NAL P L D GE+S SG G+HTT L +
Sbjct: 220 KSSLVNALI----------------PEL------DIEEGEISELSGLGQHTTTAARLYHI 257
Query: 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
GG L D+PG + L + + + + + E
Sbjct: 258 PSGGNLIDSPGVREFGLWHLEPEEITKAYLE 288
>gi|423342711|ref|ZP_17320425.1| ribosome small subunit-dependent GTPase A [Parabacteroides
johnsonii CL02T12C29]
gi|409216966|gb|EKN09945.1| ribosome small subunit-dependent GTPase A [Parabacteroides
johnsonii CL02T12C29]
Length = 310
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 25/193 (12%)
Query: 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKS 130
ANVD +L+ +++ P + RFL AE+ +P+ L NK++ D E+L+ +
Sbjct: 85 AANVDQAMLIVTVNYPITTTVFIDRFLATAEAYRVPVKLVFNKIDRYNGGDRELLDGLVN 144
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
T GY ++ GLD L + L+ + T++ G SGVGKS++IN L
Sbjct: 145 LYTTIGYPCSMLCARTEEGLDGLKEDLKGKITLLSGHSGVGKSTIINKL----------- 193
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
I G+ D R G++S +G HTT ++PL GGYL DTPG ++
Sbjct: 194 -------IPGA----DLRTGDISEYHNKGMHTTTFSEMIPLPDGGYLIDTPGIKGFGTIE 242
Query: 251 VTKQSLAQTFPEV 263
+ +A FPE+
Sbjct: 243 MEGAEIAHYFPEI 255
>gi|229526904|ref|ZP_04416307.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae bv.
albensis VL426]
gi|229336073|gb|EEO01092.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae bv.
albensis VL426]
Length = 353
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 122/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 65 CNLRRGIESLVSGDNVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ +TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYSTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALL------------ 227
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ ED G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 228 --------PELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGDLIDSPGVREFGLWHLE 279
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 280 TDDVTKAYVE 289
>gi|121591590|ref|ZP_01678843.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae 2740-80]
gi|153823995|ref|ZP_01976662.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae B33]
gi|227080552|ref|YP_002809103.1| ribosome-associated GTPase [Vibrio cholerae M66-2]
gi|229506864|ref|ZP_04396372.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae BX
330286]
gi|229508669|ref|ZP_04398163.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae B33]
gi|229516051|ref|ZP_04405502.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae RC9]
gi|229606378|ref|YP_002877026.1| ribosome-associated GTPase [Vibrio cholerae MJ-1236]
gi|254851650|ref|ZP_05241000.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae MO10]
gi|255747140|ref|ZP_05421083.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholera CIRS
101]
gi|262149016|ref|ZP_06028161.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae
INDRE 91/1]
gi|298501302|ref|ZP_07011099.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae MAK 757]
gi|379740220|ref|YP_005332189.1| GTPase RsgA [Vibrio cholerae IEC224]
gi|417811413|ref|ZP_12458076.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-49A2]
gi|417815185|ref|ZP_12461821.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HCUF01]
gi|418331046|ref|ZP_12942000.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-06A1]
gi|418336205|ref|ZP_12945105.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-23A1]
gi|418342584|ref|ZP_12949390.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-28A1]
gi|418347748|ref|ZP_12952485.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-43A1]
gi|419824809|ref|ZP_14348318.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1033(6)]
gi|421315613|ref|ZP_15766186.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1032(5)]
gi|421319125|ref|ZP_15769686.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1038(11)]
gi|421323161|ref|ZP_15773692.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1041(14)]
gi|421327568|ref|ZP_15778085.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1042(15)]
gi|421330564|ref|ZP_15781047.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1046(19)]
gi|421334162|ref|ZP_15784633.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1048(21)]
gi|421338061|ref|ZP_15788502.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-20A2]
gi|421345535|ref|ZP_15795922.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-46A1]
gi|422890376|ref|ZP_16932808.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-40A1]
gi|422901173|ref|ZP_16936559.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-48A1]
gi|422905338|ref|ZP_16940203.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-70A1]
gi|422905384|ref|ZP_16940244.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-70A1]
gi|422912082|ref|ZP_16946616.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HFU-02]
gi|422924558|ref|ZP_16957605.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-38A1]
gi|423143611|ref|ZP_17131232.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-19A1]
gi|423148592|ref|ZP_17135958.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-21A1]
gi|423152370|ref|ZP_17139589.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-22A1]
gi|423155184|ref|ZP_17142325.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-32A1]
gi|423159026|ref|ZP_17146002.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-33A2]
gi|423163703|ref|ZP_17150504.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-48B2]
gi|423729720|ref|ZP_17703046.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-17A1]
gi|423746943|ref|ZP_17711236.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-50A2]
gi|423891432|ref|ZP_17725252.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-62A1]
gi|423926265|ref|ZP_17729869.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-77A1]
gi|424000887|ref|ZP_17743984.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-17A2]
gi|424005045|ref|ZP_17748037.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-37A1]
gi|424022841|ref|ZP_17762512.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-62B1]
gi|424025860|ref|ZP_17765484.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-69A1]
gi|424585239|ref|ZP_18024839.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1030(3)]
gi|424589614|ref|ZP_18029067.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1037(10)]
gi|424593863|ref|ZP_18033209.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1040(13)]
gi|424597794|ref|ZP_18037000.1| ribosome small subunit-dependent GTPase A [Vibrio Cholerae
CP1044(17)]
gi|424600560|ref|ZP_18039723.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1047(20)]
gi|424605493|ref|ZP_18044463.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1050(23)]
gi|424609193|ref|ZP_18048058.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-39A1]
gi|424612111|ref|ZP_18050924.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-41A1]
gi|424615991|ref|ZP_18054688.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-42A1]
gi|424620766|ref|ZP_18059299.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-47A1]
gi|424643569|ref|ZP_18081329.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-56A2]
gi|424651491|ref|ZP_18089021.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-57A2]
gi|424655453|ref|ZP_18092762.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-81A2]
gi|440712275|ref|ZP_20892898.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae
4260B]
gi|443502387|ref|ZP_21069385.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-64A1]
gi|443506295|ref|ZP_21073097.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-65A1]
gi|443510131|ref|ZP_21076808.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-67A1]
gi|443513966|ref|ZP_21080516.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-68A1]
gi|443517779|ref|ZP_21084207.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-71A1]
gi|443522362|ref|ZP_21088616.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-72A2]
gi|443529293|ref|ZP_21095312.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-7A1]
gi|443534028|ref|ZP_21099955.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-80A1]
gi|443536702|ref|ZP_21102561.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-81A1]
gi|449054428|ref|ZP_21733096.1| Ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae O1
str. Inaba G4222]
gi|121546556|gb|EAX56758.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae 2740-80]
gi|126518482|gb|EAZ75705.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae B33]
gi|227008440|gb|ACP04652.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae M66-2]
gi|229346954|gb|EEO11921.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae RC9]
gi|229354304|gb|EEO19233.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae B33]
gi|229355969|gb|EEO20888.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae BX
330286]
gi|229369033|gb|ACQ59456.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae
MJ-1236]
gi|254847355|gb|EET25769.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae MO10]
gi|255735189|gb|EET90591.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholera CIRS
101]
gi|262031206|gb|EEY49825.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae
INDRE 91/1]
gi|297539993|gb|EFH76057.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae MAK 757]
gi|340044141|gb|EGR05095.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HCUF01]
gi|340045548|gb|EGR06490.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-49A2]
gi|341626015|gb|EGS51435.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-70A1]
gi|341626070|gb|EGS51477.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-70A1]
gi|341627547|gb|EGS52849.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-48A1]
gi|341628149|gb|EGS53426.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-40A1]
gi|341641478|gb|EGS66019.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HFU-02]
gi|341648858|gb|EGS72881.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-38A1]
gi|356422048|gb|EHH75533.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-06A1]
gi|356422857|gb|EHH76325.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-21A1]
gi|356427041|gb|EHH80310.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-19A1]
gi|356433381|gb|EHH86571.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-23A1]
gi|356435228|gb|EHH88385.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-22A1]
gi|356438333|gb|EHH91373.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-28A1]
gi|356443963|gb|EHH96780.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-32A1]
gi|356448215|gb|EHI00995.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-43A1]
gi|356450903|gb|EHI03610.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-33A2]
gi|356456614|gb|EHI09207.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-48B2]
gi|378793730|gb|AFC57201.1| GTPase RsgA [Vibrio cholerae IEC224]
gi|395922879|gb|EJH33693.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1032(5)]
gi|395924182|gb|EJH34990.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1041(14)]
gi|395925974|gb|EJH36766.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1038(11)]
gi|395933090|gb|EJH43832.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1042(15)]
gi|395934959|gb|EJH45695.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1046(19)]
gi|395937922|gb|EJH48628.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1048(21)]
gi|395946876|gb|EJH57535.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-20A2]
gi|395948683|gb|EJH59325.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-46A1]
gi|395964326|gb|EJH74556.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-56A2]
gi|395964530|gb|EJH74745.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-57A2]
gi|395967493|gb|EJH77577.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-42A1]
gi|395975943|gb|EJH85411.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-47A1]
gi|395978704|gb|EJH88078.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1030(3)]
gi|395979750|gb|EJH89082.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1047(20)]
gi|408010622|gb|EKG48474.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-39A1]
gi|408017405|gb|EKG54911.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-41A1]
gi|408037043|gb|EKG73450.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1037(10)]
gi|408037773|gb|EKG74148.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1040(13)]
gi|408045249|gb|EKG81099.1| ribosome small subunit-dependent GTPase A [Vibrio Cholerae
CP1044(17)]
gi|408047138|gb|EKG82789.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1050(23)]
gi|408057889|gb|EKG92719.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-81A2]
gi|408612072|gb|EKK85419.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae
CP1033(6)]
gi|408628005|gb|EKL00786.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-17A1]
gi|408643562|gb|EKL15283.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-50A2]
gi|408659509|gb|EKL30553.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-77A1]
gi|408660327|gb|EKL31346.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-62A1]
gi|408849779|gb|EKL89786.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-37A1]
gi|408850095|gb|EKL90080.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-17A2]
gi|408875012|gb|EKM14168.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-62B1]
gi|408881669|gb|EKM20533.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-69A1]
gi|439972048|gb|ELP48353.1| ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae
4260B]
gi|443433265|gb|ELS75777.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-64A1]
gi|443437095|gb|ELS83200.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-65A1]
gi|443440928|gb|ELS90604.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-67A1]
gi|443444749|gb|ELS98012.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-68A1]
gi|443448586|gb|ELT05210.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-71A1]
gi|443451644|gb|ELT11894.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-72A2]
gi|443459930|gb|ELT27322.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-7A1]
gi|443462813|gb|ELT33837.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-80A1]
gi|443467704|gb|ELT42359.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HC-81A1]
gi|448266062|gb|EMB03293.1| Ribosome small subunit-stimulated GTPase EngC [Vibrio cholerae O1
str. Inaba G4222]
Length = 353
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 122/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 65 CNLRRGIESLVSGDNVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ +TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYSTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALL------------ 227
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
+ ED G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 228 --------PELEEDVEEGAISETSGLGQHTTTAARLYHIPSGGDLIDSPGVREFGLWHLE 279
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 280 TDDVTKAYVE 289
>gi|418108528|ref|ZP_12745563.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41410]
gi|353777055|gb|EHD57529.1| ribosome small subunit-dependent GTPase A [Streptococcus pneumoniae
GA41410]
Length = 514
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 108/223 (48%), Gaps = 37/223 (16%)
Query: 51 DWVD------RRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE 104
DWVD G I + +R ++ PP+ N+D +++ S+ +P L RFLV E
Sbjct: 41 DWVDFSAEENSEGYILKIHERKNSLVRPPIVNIDQAVVIMSVKEPDFNSNLLDRFLVLLE 100
Query: 105 STGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + ++K++L++ L+ ++ GY+ V SK + LL L + TV
Sbjct: 101 HKGIHPIVYISKMDLLENRGELDFYRQTYGDIGYD----FVTSK---EELLSLLTGKVTV 153
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
+G +GVGKS+L+N L P L + GE+S GRG+HTT
Sbjct: 154 FMGQTGVGKSTLLNKLV----------------PDL------NLETGEISDSLGRGRHTT 191
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266
R VS L+GG +ADTPGF+ + L Q FPE+ V
Sbjct: 192 RAVSFYNLNGGK-IADTPGFSSLDYEVSRAEDLNQAFPEIATV 233
>gi|422908873|ref|ZP_16943535.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HE-09]
gi|341637661|gb|EGS62338.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HE-09]
Length = 353
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 65 CNLRRGIESLVSGDKVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYTTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL P D +
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALL--PELEDGVE-- 235
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 236 ----------------EGAISETSGLGQHTTTAARLYHIPSGGNLIDSPGVREFGLWHLE 279
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 280 TDDVTKAYVE 289
>gi|424658234|ref|ZP_18095494.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HE-16]
gi|408055677|gb|EKG90594.1| ribosome small subunit-dependent GTPase A [Vibrio cholerae HE-16]
Length = 353
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 28/250 (11%)
Query: 16 CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVA 75
CN + G+E L +L + L G + G ++ V+ R + V + L P A
Sbjct: 65 CNLRRGIESLVSGDKVLWRPGAETLAG---ISGVVEAVEARSSVL-VRPDYYDGLKPVAA 120
Query: 76 NVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRL 132
NVD ++++ S+ P+L + R+L+ +E+ GI + LNK++L+ E+ TW +
Sbjct: 121 NVDQMVIVSSV-LPELSLNIIDRYLIASETLGIAPLIVLNKIDLLSPELREQYTTWLNDY 179
Query: 133 HTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVD 192
GY+ L+ S ++ G+ L +LRD+T V VG SGVGKSSL+NAL P D +
Sbjct: 180 RAIGYDVLYVSKKTGEGIADLEVKLRDRTNVFVGQSGVGKSSLVNALL--PELEDGVE-- 235
Query: 193 NWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252
G +S SG G+HTT L + GG L D+PG + L +
Sbjct: 236 ----------------EGAISETSGLGQHTTTAARLYHIPSGGNLIDSPGVREFGLWHLE 279
Query: 253 KQSLAQTFPE 262
+ + + E
Sbjct: 280 TDDVTKAYVE 289
>gi|409096883|ref|ZP_11216907.1| GTPase RsgA [Pedobacter agri PB92]
Length = 306
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 109/238 (45%), Gaps = 36/238 (15%)
Query: 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV----------ANVDHLLLLFSMDQ 88
+ VGD+V ++ +G+I + R I+ + AN+D +LL ++
Sbjct: 42 IAVGDRVKF-DLEKDSNQGLINELLPRKNYIIRKSINLSKQAQILAANLDMAILLVTLAS 100
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFCSVE 145
P+ + RFLV AE+ +P L NK++L +E +L +K GY S
Sbjct: 101 PRTSLGFIDRFLVTAEAYDVPAVLVFNKLDLFSKEGLEILQDFKEIYEKIGYPCYEVSAL 160
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ + + + + D+ T+I G SGVGKSSLINAL
Sbjct: 161 KGINIPVIQELITDKITLISGHSGVGKSSLINALLPD----------------------R 198
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
D R GEVS S +G+HTT + L GG++ DTPG + ++ + K+ L F E+
Sbjct: 199 DLRTGEVSDWSDKGQHTTTFAEMFELPQGGFIVDTPGIRELGVIDIEKEELGHFFREI 256
>gi|392552531|ref|ZP_10299668.1| GTPase RsgA [Pseudoalteromonas spongiae UST010723-006]
Length = 351
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 126/249 (50%), Gaps = 36/249 (14%)
Query: 27 VVRALLKKIKRRVLVGDKVVV--GSIDWVDRRGMIENVFQRSTEILDPP--------VAN 76
++R +++ + ++ GD V+ + D G+IE V +R++++ P AN
Sbjct: 67 ILRCNIRRTIKSLVCGDNVIFRPAKVSEGDLAGVIELVEERTSQLTRPDFYDGVKVVAAN 126
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW- 135
+D +L++ ++ P+ P + R+LV E GI L LNKV+L+D+E + L +
Sbjct: 127 IDQILMVSAV-LPEFTPNIIDRYLVACEDMGIEPILVLNKVDLLDDEGIEYLDEVLDIYR 185
Query: 136 --GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN 193
GY+ F S ++ G++ L L+D++++ VG SGVGKS+L+N+L P A+
Sbjct: 186 DIGYQVYFISNKTGQGVEELKALLKDKSSIFVGQSGVGKSTLVNSLL--PDAN------- 236
Query: 194 WFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTK 253
IL EVS SG G+HTT +L L+ GG L D+PG + L +
Sbjct: 237 ----IL---------TQEVSEVSGLGQHTTTVSTLHHLASGGDLIDSPGIREFGLWHLEN 283
Query: 254 QSLAQTFPE 262
+ F E
Sbjct: 284 DRVTWCFKE 292
>gi|350270713|ref|YP_004882021.1| putative ribosome biogenesis GTPase RsgA [Oscillibacter
valericigenes Sjm18-20]
gi|348595555|dbj|BAK99515.1| putative ribosome biogenesis GTPase RsgA [Oscillibacter
valericigenes Sjm18-20]
Length = 295
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 113/245 (46%), Gaps = 36/245 (14%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
L C R ++ LVGD V + + D G++E V R + L P VANVD ++++
Sbjct: 23 LRCRARGKFRREGLSPLVGDWVEIRELGNGD--GIVEAVKPRKNDFLRPAVANVDQIVVI 80
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPL 140
S PK +P+ + R A + + LNK +L ++ S H + G+ +
Sbjct: 81 ASEALPKTDPYLIDRLSAIAVLKSCGVVVVLNKCDL------DSADSLYHIYRAAGFPTV 134
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
S E+ GL+ L + + + G SGVGKSS++NAL H
Sbjct: 135 RVSAETGEGLEELKPLISGRLSAFTGNSGVGKSSILNALDPEFHL--------------- 179
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPG---FNQPSLLKVTKQSLA 257
+VGE+S GRG+HTTRH+ L L G + D+PG F+ L K L
Sbjct: 180 -------QVGEISAALGRGRHTTRHIELYHLDCGADVVDSPGFASFDTDELDLELKHRLP 232
Query: 258 QTFPE 262
+TFP+
Sbjct: 233 ETFPD 237
>gi|227536004|ref|ZP_03966053.1| GTP-binding protein [Sphingobacterium spiritivorum ATCC 33300]
gi|227244117|gb|EEI94132.1| GTP-binding protein [Sphingobacterium spiritivorum ATCC 33300]
Length = 306
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 25/195 (12%)
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHT 134
AN+D LL+ ++ P + RFLV AE+ +P L NK++L EE L+ K H
Sbjct: 87 ANLDQALLVVTLASPPTSLGFIDRFLVTAEAYSVPAMLVFNKLDLFSEEGLDILKEYEHI 146
Query: 135 W---GYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADV 191
+ GY S + ++ L L+D+ T++ G SGVGKS+LINAL P A
Sbjct: 147 YESIGYPCYEVSALEGINVEELKDLLKDRVTLVSGHSGVGKSTLINAL--IPEAG----- 199
Query: 192 DNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKV 251
+ G +S S +GKHTT ++ L GG L DTPG + ++ +
Sbjct: 200 ---------------LKTGSISDWSDKGKHTTTFAEMMDLPFGGKLIDTPGIRELGIVDI 244
Query: 252 TKQSLAQTFPEVCAV 266
Q L+ FPE+ A+
Sbjct: 245 EPQELSHFFPEMRAL 259
>gi|39938668|ref|NP_950434.1| hypothetical protein PAM_182 [Onion yellows phytoplasma OY-M]
gi|81402519|sp|Q6YR36.1|RSGA_ONYPE RecName: Full=Putative ribosome biogenesis GTPase RsgA
gi|39721777|dbj|BAD04267.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M]
Length = 306
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 112/207 (54%), Gaps = 25/207 (12%)
Query: 58 MIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKV 117
+I+++ R E+ P VAN+D +LL+FS+ +P + L +FL+ E + + L +K+
Sbjct: 69 LIQSILPRKNELKRPNVANIDQVLLVFSLVKPNFQFLLLDKFLLILEQQKLDVVLVFSKI 128
Query: 118 ELVDEEVLNTWKSRLHTW-GYEPL-FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSL 175
+L++ E L T + +L + ++P + + + K+G+D+L +Q TV+ G +GVGKS+L
Sbjct: 129 DLLEPENLTTMQQQLSYYQKFQPFYYINSKQKIGIDALKHIFANQITVLAGQTGVGKSTL 188
Query: 176 INALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235
+ AL P A + E+S GRGKHTT++ L + GG
Sbjct: 189 LKAL--IPDAK--------------------LKTQEISESLGRGKHTTKNAQLYEFN-GG 225
Query: 236 YLADTPGFNQPSLLKVTKQSLAQTFPE 262
++ DTPGF++ L ++L +P+
Sbjct: 226 FIVDTPGFSKLDLTTFCPRTLKNFYPD 252
>gi|410617083|ref|ZP_11328059.1| ribosome-associated GTPase [Glaciecola polaris LMG 21857]
gi|410163352|dbj|GAC32197.1| ribosome-associated GTPase [Glaciecola polaris LMG 21857]
Length = 342
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 132/279 (47%), Gaps = 47/279 (16%)
Query: 4 IVQQSEPSRT-------SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVV--GSIDWVD 54
++++ +P R +D D G C +R + V+ GD+V+ G +
Sbjct: 34 LLEEQQPGRVIGRFGKHADVEDSEGHIHRCHIRRTVIS----VVCGDEVLFRPGKDGTEN 89
Query: 55 RRGMIENVFQRSTEI--------LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST 106
G+IE V R T + + P AN+D ++++ S+ P L + R+LV +E
Sbjct: 90 ISGVIEIVHDRKTVLTRPDFYDGVKPVAANIDQIIIVSSV-IPALSLNIIDRYLVASEDV 148
Query: 107 GIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFCSVESKLGLDSLLQRLRDQTTV 163
GI + LNKVEL+++ + +LH + GY ++ S +++ G+ L L+D+ +V
Sbjct: 149 GIEPVILLNKVELLNDSEREDVEKQLHIYHDIGYRVVYTSCKTQTGISDLALCLKDKISV 208
Query: 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223
VG SGVGKSS+IN L DA ++ N EVS SG G+HTT
Sbjct: 209 FVGQSGVGKSSIINEL-----LPDAKEITN-----------------EVSDNSGLGQHTT 246
Query: 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
LL GG L D+PG + +L + + L F E
Sbjct: 247 TTAKLLHFPQGGDLIDSPGVREFALWHMQMERLTWGFKE 285
>gi|441499159|ref|ZP_20981346.1| Ribosome small subunit-stimulated GTPase EngC [Fulvivirga
imtechensis AK7]
gi|441437025|gb|ELR70382.1| Ribosome small subunit-stimulated GTPase EngC [Fulvivirga
imtechensis AK7]
Length = 307
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 126/267 (47%), Gaps = 42/267 (15%)
Query: 17 NDKTGVELLCVVRALLK----KIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDP 72
ND++ C R L+ K + VGD VV + V+ +G+I+ + R I+
Sbjct: 19 NDRS---YTCRTRGKLRLKGFKTTNPIAVGDYVVFSLDEEVEGQGVIDEILPRENYIIRK 75
Query: 73 PV----------ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE 122
V +N+D +L+ ++ P+ + RFLV AES IP L NK++L+D
Sbjct: 76 SVKLKSQGHIIASNIDQAILIVTLAYPRTSLGFIDRFLVTAESFRIPQVLIFNKIDLLDG 135
Query: 123 EV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINAL 179
+ L +S G + L S ++ G++ + L+ + ++I G SGVGKS+LIN +
Sbjct: 136 DARHYLAEIRSLYENIGIQCLEVSALTETGIEDVKDLLKGKKSLISGHSGVGKSTLINKI 195
Query: 180 RSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239
+P +Q+ GEVS + +G HTT + + ++ D
Sbjct: 196 --APEI--------------------NQKTGEVSDYAEKGIHTTTFAEMFRIGQDTFIID 233
Query: 240 TPGFNQPSLLKVTKQSLAQTFPEVCAV 266
TPG + ++ + K+ L+ FPE+ A+
Sbjct: 234 TPGIKELGIIDIDKEELSDYFPEMRAL 260
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,305,227,002
Number of Sequences: 23463169
Number of extensions: 178468664
Number of successful extensions: 888535
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2822
Number of HSP's successfully gapped in prelim test: 1370
Number of HSP's that attempted gapping in prelim test: 878418
Number of HSP's gapped (non-prelim): 4480
length of query: 276
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 136
effective length of database: 9,074,351,707
effective search space: 1234111832152
effective search space used: 1234111832152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)