BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023887
(276 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3MG79|RSGA_ANAVT Putative ribosome biogenesis GTPase RsgA OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=rsgA PE=3 SV=1
Length = 370
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 146/238 (61%), Gaps = 23/238 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R LKKI ++V+VGD+VVV DW RG I V R T++ PP+AN D +LL+F+
Sbjct: 57 CTRRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIAEVLSRQTQLDRPPIANADQILLVFA 116
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P LEP+ L+RFLV+AE+TG+ + L LNK +LV E+ RL WGY+PLF SVE
Sbjct: 117 VADPPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVE 176
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
++ +D + + L ++ TV+ GPSGVGKSSLINAL D+
Sbjct: 177 KQINIDQIAKYLSNKITVVAGPSGVGKSSLINAL--------IPDI-------------- 214
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
+ RVGEVS K RG+HTTRHV L L GG LADTPGFNQP + + + L FPE
Sbjct: 215 NLRVGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEA 271
>sp|Q8YUA3|RSGA1_NOSS1 Putative ribosome biogenesis GTPase RsgA 1 OS=Nostoc sp. (strain
PCC 7120 / UTEX 2576) GN=rsgA1 PE=3 SV=1
Length = 370
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/235 (47%), Positives = 147/235 (62%), Gaps = 23/235 (9%)
Query: 29 RALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQ 88
R LKKI ++V+VGD+VVV DW RG I +V R T++ PP+AN D +LL+F++
Sbjct: 60 RTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIADVLSRQTQLDRPPIANADQILLVFAVAD 119
Query: 89 PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148
P LEP+ L+RFLV+AE+TG+ + L LNK +LV E+ RL WGY+PLF SVE+++
Sbjct: 120 PPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVENQI 179
Query: 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208
+D + + L ++ TV+ GPSGVGKSSLINAL + N + R
Sbjct: 180 NIDQIAKYLSNKITVVAGPSGVGKSSLINAL-----------IPNI-----------NLR 217
Query: 209 VGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263
VGEVS K RG+HTTRHV L L GG LADTPGFNQP + + + L FPE
Sbjct: 218 VGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEA 271
>sp|B0JW21|RSGA_MICAN Putative ribosome biogenesis GTPase RsgA OS=Microcystis aeruginosa
(strain NIES-843) GN=rsgA PE=3 SV=1
Length = 358
Score = 201 bits (510), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/245 (44%), Positives = 150/245 (61%), Gaps = 23/245 (9%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G LLC RA L+KI + V+VGD+V V ++ D++G I V RSTEI P VAN++ +
Sbjct: 31 GENLLCTRRARLQKIGQSVMVGDRVRVEEANFGDQQGAIAEVLPRSTEIDRPAVANIEQI 90
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL 140
LL+F++ +P L+P+ ++RFLV+AESTG+ + + +NK++L + E + W RL WGY P
Sbjct: 91 LLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLAGWGYRPF 150
Query: 141 FCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG 200
F SVE G ++LL +L + T++ GPSGVGKSSLIN L P
Sbjct: 151 FVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCL--IPEI--------------- 193
Query: 201 SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+QRVG+VS K +G+HTTRHV L L G LAD+PGFNQP + + L F
Sbjct: 194 -----NQRVGDVSGKLQKGRHTTRHVQLFALPNRGLLADSPGFNQPD-INCLPEELTFYF 247
Query: 261 PEVCA 265
PEV A
Sbjct: 248 PEVRA 252
>sp|Q8DK79|RSGA_THEEB Putative ribosome biogenesis GTPase RsgA OS=Thermosynechococcus
elongatus (strain BP-1) GN=rsgA PE=3 SV=1
Length = 348
Score = 182 bits (461), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 133/241 (55%), Gaps = 23/241 (9%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
ELLCV RA LKK+ ++V VGD VVV DW +RG I + R ++ P +ANVD +LL
Sbjct: 29 ELLCVRRARLKKMGQQVCVGDWVVVSHPDWPGQRGAIAEILPRRNQLSRPAIANVDQILL 88
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFC 142
LF++ P + +TRFL+ AE + + + K +LV + W+ RL WGY
Sbjct: 89 LFALADPPADVHPITRFLLTAEGLNVEIQVVFTKADLVSPQEQQQWRDRLQQWGYRCHVL 148
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +L L ++ TV+ GPSGVGKSSLI L
Sbjct: 149 SLTQGIAWQALRPHLANKITVVCGPSGVGKSSLIRHLTPR-------------------- 188
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
ED RVG VS RG+HTTRHV L PL+ GG++ADTPGFNQP L +Q LA FPE
Sbjct: 189 --EDIRVGAVSDHWHRGRHTTRHVELFPLAEGGWIADTPGFNQPELPPDPRQ-LAAAFPE 245
Query: 263 V 263
+
Sbjct: 246 I 246
>sp|P52640|RSGA_SYNY3 Putative ribosome biogenesis GTPase RsgA OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=rsgA PE=3 SV=1
Length = 369
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 143/260 (55%), Gaps = 39/260 (15%)
Query: 20 TGVELLCVVRALLKKIKRRVLVGDKVVV--------------GSIDWVDRR--GMIENVF 63
T LLC R LKK+ ++V+VGD+V V + V G I V+
Sbjct: 26 TSQPLLCTRRTRLKKVGQKVMVGDQVRVELPPSLLLHGRSNTAPVPMVAEGDLGAIAKVY 85
Query: 64 QRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE 123
R T + PPVAN + + L+F++ P LE + L+RFLV+AE+TG+ ++L NK +LV E
Sbjct: 86 PRRTVLERPPVANAEQICLVFALTDPPLEEWQLSRFLVQAEATGLEISLCFNKQDLVQET 145
Query: 124 VLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183
+ W RL WGY P+ SVE++ G++ L ++LR + +++ GPSGVGKSSLIN L
Sbjct: 146 DVKFWGDRLAAWGYAPIIISVENRWGVEKLQEKLRSRISLMAGPSGVGKSSLINLL---- 201
Query: 184 HASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243
+ G +Q+V VS K +G+HTTRHV L L GG LADTPGF
Sbjct: 202 --------------VPGV----EQQVKNVSGKLRKGRHTTRHVELFDLPHGGLLADTPGF 243
Query: 244 NQPSLLKVTKQSLAQTFPEV 263
NQP L V L FPE
Sbjct: 244 NQPD-LAVEPAQLIHLFPEA 262
>sp|Q7VEJ4|RSGA_PROMA Putative ribosome biogenesis GTPase RsgA OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=rsgA PE=3 SV=1
Length = 309
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 134/241 (55%), Gaps = 24/241 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R+ L V VGD V++ +IDW G+I V R I PPVANV ++++
Sbjct: 46 LLCTKRSRLSYKGHSVSVGDFVLIEAIDWTAETGVISFVEPRKNLITRPPVANVTDVIIV 105
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
S+ P + ++RFL++AE TG+ +T+ L K +L+DE++L + +L TWGY+P+ S
Sbjct: 106 VSLLDPSFDLNQVSRFLMKAEETGLKVTIVLTKRDLIDEKILEKYDKKLQTWGYQPIPIS 165
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ + G+ L RL+ + V+ GPSGVGKSSLIN L P S
Sbjct: 166 IVNGEGIQKLSARLKSMKLGVLCGPSGVGKSSLINYLL--PKISIP-------------- 209
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+G++S K RG+HTTRHV L + ++ADTPGFN+P Q + Q FPE
Sbjct: 210 ------IGKLSKKLKRGRHTTRHVELFSIYSDSFIADTPGFNKPEFYTEPSQ-VPQLFPE 262
Query: 263 V 263
+
Sbjct: 263 L 263
>sp|Q0IE58|RSGA_SYNS3 Putative ribosome biogenesis GTPase RsgA OS=Synechococcus sp.
(strain CC9311) GN=rsgA PE=3 SV=1
Length = 304
Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 131/241 (54%), Gaps = 24/241 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID R ++ +V R + + PPVAN +++
Sbjct: 36 LLCTRRTRLSHRGEAVYVGDRVRVEAIDVSHARAVVADVEPRVSFLTRPPVANASTVVVA 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++DQP +P +RFL+ AE T + + L L K +L++ E L + RL WGY PL S
Sbjct: 96 LAVDQPAFDPDQASRFLLTAERTSLAVQLVLTKTDLLEPEALERLRVRLQAWGYPPLLVS 155
Query: 144 VESKLGLDSLLQRLRDQT-TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S LGL L QRL + + +V+ GPSGVGKSSL+NAL P L
Sbjct: 156 TFSGLGLSELKQRLAESSLSVLCGPSGVGKSSLLNAL----------------IPEL--- 196
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D R+G VS + RG+HTTRHV L L +ADTPGFN+P L ++L FPE
Sbjct: 197 ---DLRIGSVSGRLQRGRHTTRHVELHHLGAKARVADTPGFNRPDLPD-DPRNLEVLFPE 252
Query: 263 V 263
+
Sbjct: 253 L 253
>sp|Q9K9Z1|RSGA_BACHD Putative ribosome biogenesis GTPase RsgA OS=Bacillus halodurans
(strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153
/ C-125) GN=rsgA PE=3 SV=1
Length = 294
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 129/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + LVGD+VV + + D G + + +R E+L PP+ANVD +L+FS
Sbjct: 25 CRGRGNFRNRNIKPLVGDEVVFEAENKTD--GYVLEIMERKNELLRPPIANVDRAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E+ GI + ++K++L+ EE L T K + + GY+
Sbjct: 83 AAEPTFSPLLLDRFLVHVEANGIEPLIVISKIDLLTEEELETIKQYRNDYEQLGYKVYLT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +LGLD++ + D +VI G SGVGKSSL+NA+ P L
Sbjct: 143 STIEQLGLDAIRKEFDDHVSVIAGQSGVGKSSLLNAIN----------------PAL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
D ++S+ GRGKHTTRHV L+P G G +ADTPGF+ + + + L+ FPE
Sbjct: 184 ---DIETNQISSHLGRGKHTTRHVELIPF-GSGLVADTPGFSSLDFIDMEPEELSHYFPE 239
Query: 263 V 263
+
Sbjct: 240 M 240
>sp|A6TRW0|RSGA_ALKMQ Putative ribosome biogenesis GTPase RsgA OS=Alkaliphilus
metalliredigens (strain QYMF) GN=rsgA PE=3 SV=1
Length = 292
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 131/235 (55%), Gaps = 22/235 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +L+K K LVGD V + D +++GMI+++F R TE++ P VANVD ++++FS
Sbjct: 25 CKGRGILRKKKLTPLVGDYVEITVTDEDNKKGMIDDIFPRKTELIRPTVANVDQVIVVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ QP L FL+ AE+ I + + LNK++LV E + GY + S
Sbjct: 85 VTQPDPHLSLLDHFLILAETQNIDVVICLNKLDLVQREDVAELVGIYEKVGYPVILTSQN 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+GL+ L + LR +TTV GPSGVGKS+L+N R PH +
Sbjct: 145 DSIGLEQLEKVLRGKTTVFAGPSGVGKSTLLN--RILPHVT------------------- 183
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTF 260
+ GE+S+K RGKHTTRHV L+ L G++ DTPGF+ ++ + ++ LA F
Sbjct: 184 -LQTGELSSKIARGKHTTRHVELISLETEGWVVDTPGFSSLNIDFLKEEELADYF 237
>sp|Q7UA74|RSGA_SYNPX Putative ribosome biogenesis GTPase RsgA OS=Synechococcus sp.
(strain WH8102) GN=rsgA PE=3 SV=1
Length = 299
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 133/241 (55%), Gaps = 24/241 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID V R ++ V R + + P VANV +++
Sbjct: 31 LLCTRRTRLSHRGETVHVGDRVRVEAIDPVQARAVVSGVEPRCSWLTRPQVANVSLVVVA 90
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
++DQP +P +RFL+ AE TG+P+ L L K +L++E RL WGY+ L S
Sbjct: 91 LAVDQPAFDPDQASRFLLTAERTGLPVQLLLTKGDLMEEHQRFALVERLMGWGYDSLVVS 150
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
++ G++ L QRL+D + V+ GPSGVGKSS++N L PH +
Sbjct: 151 SQTGEGVEVLSQRLKDTELAVLCGPSGVGKSSVLNCL--MPHLA---------------- 192
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RVG VS + RG+HTTRHV L P++ G +ADTPGFN+P L + L FPE
Sbjct: 193 ----LRVGAVSGRLQRGRHTTRHVELFPIAPGSRVADTPGFNRPDLPDDPSE-LGMLFPE 247
Query: 263 V 263
+
Sbjct: 248 L 248
>sp|Q97IC1|RSGA_CLOAB Putative ribosome biogenesis GTPase RsgA OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=rsgA PE=3 SV=1
Length = 288
Score = 144 bits (364), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 128/223 (57%), Gaps = 26/223 (11%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV I ++ +G+IE + R+ +++ PPV+NV ++FS+ P+ L +F
Sbjct: 38 IVGDKV---DITVINGKGVIEKIHPRTNKLIRPPVSNVTQAFIVFSIVNPEFSSDLLNKF 94
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
L+ E I + + +NK++LV+EE+L K+ L+ GYE F + +SK+G++ L + L+D
Sbjct: 95 LILCEFNNIKVKVCINKIDLVNEELLTPIKNLLNNTGYELKFLNAKSKIGINELKESLKD 154
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
TV+ GPSGVGKS+L+N++ S + G++S K RG
Sbjct: 155 NITVVCGPSGVGKSTLMNSIAGS----------------------NVMKTGDISEKLKRG 192
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
K+TTRH L+ ++ GG++ DTPGF+ L + + L FPE
Sbjct: 193 KNTTRHSELIEVA-GGFIVDTPGFSSLDLNFIDRYELKDLFPE 234
>sp|Q3ANM7|RSGA_SYNSC Putative ribosome biogenesis GTPase RsgA OS=Synechococcus sp.
(strain CC9605) GN=rsgA PE=3 SV=1
Length = 304
Score = 144 bits (363), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 128/241 (53%), Gaps = 24/241 (9%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
LLC R L V VGD+V V +ID R ++ V R + + PPVANV + ++
Sbjct: 36 LLCTRRTRLSHRGEAVYVGDRVRVEAIDPGQGRAVVAEVEPRHSFLTRPPVANVSLVAVV 95
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCS 143
+++QP +P +RFL+ AE TG+ + L L K +L+ L +RL WGY+PL S
Sbjct: 96 LAVEQPSFDPDQASRFLLTAERTGLEVILLLTKTDLLSAAALERLVTRLQGWGYDPLAFS 155
Query: 144 VESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
+ G+D+L QRL Q +V+ GPSGVGKSSL+N L D+
Sbjct: 156 SAAGTGIDALRQRLAGAQLSVLCGPSGVGKSSLLNQL--------CPDL----------- 196
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
R VS + RG+HTTRHV L PL +ADTPGFN+P L + Q L FPE
Sbjct: 197 ---QLRTAAVSGRLQRGRHTTRHVELFPLGPSARVADTPGFNRPDLPE-DPQELGVLFPE 252
Query: 263 V 263
+
Sbjct: 253 L 253
>sp|B2THS4|RSGA_CLOBB Putative ribosome biogenesis GTPase RsgA OS=Clostridium botulinum
(strain Eklund 17B / Type B) GN=rsgA PE=3 SV=1
Length = 290
Score = 141 bits (355), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 125/238 (52%), Gaps = 27/238 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD VV I + +G+IE++ +RS+E+L P VAN+ ++F+
Sbjct: 24 CKARGKFRHKDVKPMVGDNVV---IQVENGKGVIESIEKRSSELLRPAVANISLAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FLV E I + LNKV+LV EE K R++ GYE L+ + +
Sbjct: 81 IKSPDINFDLLNKFLVLCEYNHIEAIVCLNKVDLVSEEERENVKKRINDIGYEVLYINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
LG D L +++ TV+ GPSG GKS+LIN L + H
Sbjct: 141 EGLGTDILKEKINGNITVLCGPSGAGKSTLINKLTNKEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQSLAQTFPE 262
G VS K GRGKHTTRH L+ +S GY+ DTPGF+ + + + K+ L FPE
Sbjct: 180 -MLTGIVSEKIGRGKHTTRHSELIEVS-NGYIVDTPGFSTLEIKELMNKEDLKYCFPE 235
>sp|B2V4B8|RSGA_CLOBA Putative ribosome biogenesis GTPase RsgA OS=Clostridium botulinum
(strain Alaska E43 / Type E3) GN=rsgA PE=3 SV=1
Length = 290
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 124/238 (52%), Gaps = 27/238 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD V+ I + +G+IE++ +RS+E+L P VAN+ ++F+
Sbjct: 24 CKARGKFRHKDVKPMVGDNVI---IQVENGKGVIESIEKRSSELLRPAVANISLAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FLV E I + LNKV+LV EE K R++ GYE L+ + +
Sbjct: 81 IKSPDINFDLLNKFLVLCEYNHIEAIVCLNKVDLVSEEERENVKKRINDIGYEVLYINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
LG D L +++ TV+ GPSG GKS+LIN L H
Sbjct: 141 EGLGTDILKEKINGNITVLCGPSGAGKSTLINKLTDKEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK-VTKQSLAQTFPE 262
G VS K GRGKHTTRH L+ +S GY+ DTPGF+ + + + K+ L FPE
Sbjct: 180 -MLTGIVSEKIGRGKHTTRHSELIEVS-NGYIVDTPGFSTLEIKELMEKEELKYCFPE 235
>sp|Q46I43|RSGA_PROMT Putative ribosome biogenesis GTPase RsgA OS=Prochlorococcus marinus
(strain NATL2A) GN=rsgA PE=3 SV=1
Length = 312
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 130/245 (53%), Gaps = 30/245 (12%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+ LLC+ R+ L + VGD V V SID+ ++R ++ +V R + + P VANV +
Sbjct: 42 IRLLCIRRSKLNYQGLFIDVGDIVCVESIDYKNKRAVVSDVEPRQSFLKRPAVANVTLVS 101
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
+ S D+P + +RFL+ AE I + L K++L+ + L + ++ +WGY+ +
Sbjct: 102 ICISADEPLFDMEQTSRFLLTAECANIEPLIILTKIDLITKNDLILYINKFKSWGYDCIP 161
Query: 142 CSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINAL---RSSPHASDAADVDNWFEP 197
S+ + G+DSL++RLR + TV+ GPSGVGK+SLIN L S P +S
Sbjct: 162 VSIHNSQGIDSLIERLRKTKLTVLAGPSGVGKTSLINHLIPTVSLPTSS----------- 210
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
VS K RG HTTRHV L + G LADTPGFN+P ++ A
Sbjct: 211 --------------VSKKLKRGTHTTRHVELFAIGNGSLLADTPGFNRPEIV-CEPSDFA 255
Query: 258 QTFPE 262
FPE
Sbjct: 256 FLFPE 260
>sp|Q5L0R8|RSGA_GEOKA Putative ribosome biogenesis GTPase RsgA OS=Geobacillus
kaustophilus (strain HTA426) GN=rsgA PE=3 SV=1
Length = 293
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 128/245 (52%), Gaps = 28/245 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G I + +R E++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKKKVTPLVGDRVVFQATSETE--GYILEIGERQNELVRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
P L RFLV ES I + ++K++L+D E +H + GY+ +
Sbjct: 83 AVSPDFSAKLLDRFLVLVESKRITPIIVISKIDLLDGESKEEIARYVHDYRRIGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +K GLD L RLR + +V+ G SGVGKSSL+NALR P L K
Sbjct: 143 SAVTKGGLDELALRLRGRVSVVAGQSGVGKSSLLNALR----------------PDLRLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++ST GRGKHTTRHV LL ++ GG +ADTPGF+ ++ L FPE
Sbjct: 187 ------TGDISTHLGRGKHTTRHVELLEVA-GGLVADTPGFSALEFNQIELDELPHYFPE 239
Query: 263 VCAVG 267
G
Sbjct: 240 FRTYG 244
>sp|A2BZC2|RSGA_PROM1 Putative ribosome biogenesis GTPase RsgA OS=Prochlorococcus marinus
(strain NATL1A) GN=rsgA PE=3 SV=1
Length = 312
Score = 138 bits (347), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 130/245 (53%), Gaps = 30/245 (12%)
Query: 22 VELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLL 81
+ LLC+ R+ L + VGD V V SID+ ++R ++ +V R + + P VANV +
Sbjct: 42 IRLLCIRRSKLNYQGLFIDVGDIVGVESIDYKNKRAVVSDVEPRQSFLKRPAVANVTLVS 101
Query: 82 LLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLF 141
+ S D+P + +RFL+ AE I + L K++L+ + L + ++ +WGY+ +
Sbjct: 102 ICISADEPLFDMEQTSRFLLTAECANIEPLIILTKIDLITKNDLILYINKFKSWGYDCIP 161
Query: 142 CSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINAL---RSSPHASDAADVDNWFEP 197
S+ + G+DSL++RLR + TV+ GPSGVGK+SLIN L S P +S
Sbjct: 162 VSIHNSQGIDSLIERLRKTKLTVLAGPSGVGKTSLINHLIPTVSLPTSS----------- 210
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
VS K RG HTTRHV L + G LADTPGFN+P ++ A
Sbjct: 211 --------------VSKKLKRGTHTTRHVELFAIGNGSLLADTPGFNRPEIV-CEPSDFA 255
Query: 258 QTFPE 262
FPE
Sbjct: 256 FLFPE 260
>sp|Q819U6|RSGA_BACCR Putative ribosome biogenesis GTPase RsgA OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=rsgA PE=3 SV=1
Length = 293
Score = 137 bits (345), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 131/241 (54%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPTE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T ++ + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMKATVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPYLENCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>sp|A4IM52|RSGA_GEOTN Putative ribosome biogenesis GTPase RsgA OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=rsgA PE=3 SV=1
Length = 293
Score = 137 bits (345), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 127/245 (51%), Gaps = 28/245 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G I + +R E++ PPVANV+ +L+FS
Sbjct: 25 CRGRGVFRKQKVTPLVGDRVVFTATGEAE--GYILEICERQNELVRPPVANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD---EEVLNTWKSRLHTWGYEPLFC 142
P L RFLV ES I + ++K++L+D +E + + GYE +
Sbjct: 83 AVSPDFSAKLLDRFLVLVESKNITPVIVISKIDLLDGGMKETIAQYVRDYRHIGYEVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +K GLD L+ L + +V+ G SGVGKSSL+NALR P L K
Sbjct: 143 STVTKEGLDELMSHLCGRVSVVAGQSGVGKSSLLNALR----------------PDLQLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G++ST GRGKHTTRHV LL ++ GG +ADTPGF+ + L FPE
Sbjct: 187 ------TGDISTHLGRGKHTTRHVELLAIA-GGLVADTPGFSALEFDHIELDELPYYFPE 239
Query: 263 VCAVG 267
A G
Sbjct: 240 FRAYG 244
>sp|O34530|RSGA_BACSU Putative ribosome biogenesis GTPase RsgA OS=Bacillus subtilis
(strain 168) GN=rsgA PE=1 SV=1
Length = 298
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 126/244 (51%), Gaps = 29/244 (11%)
Query: 24 LLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLL 83
+ C R + +K K LVGD VV + + D+ G + + +R+ E++ PP+ NVD +L+
Sbjct: 27 IQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQAVLV 84
Query: 84 FSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEP 139
FS QP L RFLV E+ I + + K++L++ E+ + + GY+
Sbjct: 85 FSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 144
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S + + L ++ +D+TTV G SGVGKSSL+NA+ P L
Sbjct: 145 YLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAI----------------SPEL 188
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G R E+S GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L T
Sbjct: 189 G------LRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYT 241
Query: 260 FPEV 263
FP++
Sbjct: 242 FPDI 245
>sp|A2C5M0|RSGA_PROM3 Putative ribosome biogenesis GTPase RsgA OS=Prochlorococcus marinus
(strain MIT 9303) GN=rsgA PE=3 SV=1
Length = 321
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 130/247 (52%), Gaps = 24/247 (9%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
D + LLC R L V VGD+V V +IDW +RR ++ +V R + I PPVAN
Sbjct: 40 TDAEPLRLLCTRRTRLDHRGAAVHVGDRVWVEAIDWQERRAVVGDVEPRQSWINRPPVAN 99
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
V +++ ++ QP + +RFL+ AE TG+ + L L K +L+ + L RL WG
Sbjct: 100 VTAVVVALAVKQPCFDADQASRFLLSAEQTGVDVHLILTKRDLITSDQLEQQLVRLRGWG 159
Query: 137 YEPLFCSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
Y P+ SV++ GL +L +L + V GPSGVGK+SL+N L P S
Sbjct: 160 YRPMAVSVQTGEGLGALKNKLSSTRLAVFCGPSGVGKTSLLNQL--LPQLS--------- 208
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
RVG VS + RG+HTTRHV L L G +ADTPGFN+P L +
Sbjct: 209 -----------LRVGAVSGRLQRGRHTTRHVELFRLCEGSLVADTPGFNRPE-LPADPRK 256
Query: 256 LAQTFPE 262
LA FPE
Sbjct: 257 LAVLFPE 263
>sp|C4ZEV1|RSGA_EUBR3 Putative ribosome biogenesis GTPase RsgA OS=Eubacterium rectale
(strain ATCC 33656 / VPI 0990) GN=rsgA PE=3 SV=1
Length = 302
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 117/237 (49%), Gaps = 22/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C + +K K + LVGD V + +D G +E + R E++ P V+N+D L++F+
Sbjct: 35 CKAKGTFRKQKIKPLVGDTVDIAVLDEEKHIGNVERILPRKNELIRPAVSNIDMALVIFA 94
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+P L RFL E +P+T+ NK +L+ + KS GY +F S +
Sbjct: 95 SAKPDPNFNLLDRFLCMMEYQHVPVTICFNKKDLITPQKQQELKSIYEPAGYRVMFTSTK 154
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G+D + L +TT + GPSGVGKSS+IN L+ DV
Sbjct: 155 TGEGIDEIKHVLEGRTTTVAGPSGVGKSSIINCLQD--------DV-------------- 192
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH ++P+ G Y+ DTPGF+ + K+ L +PE
Sbjct: 193 QMETGHISEKIERGKHTTRHSEIIPIKDGTYIMDTPGFSSMDVPGFEKEDLWTCYPE 249
>sp|Q732K9|RSGA_BACC1 Putative ribosome biogenesis GTPase RsgA OS=Bacillus cereus (strain
ATCC 10987) GN=rsgA PE=3 SV=1
Length = 293
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPSE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P P L RFLV E I + ++K++LVDE++ T +S + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVESYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>sp|C5D8S1|RSGA_GEOSW Putative ribosome biogenesis GTPase RsgA OS=Geobacillus sp. (strain
WCH70) GN=rsgA PE=3 SV=1
Length = 293
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 127/242 (52%), Gaps = 28/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + G I N+ +R ++ PP+ANV+ +L+FS
Sbjct: 25 CRGRGVFRKQKITPLVGDHVEFQATSETE--GYIMNIRERKNWLVRPPIANVEQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW---GYEPLFC 142
+P L RFLV ES I + +NK++LVD++ T + + + GY+ +
Sbjct: 83 AVEPDFSTRLLDRFLVLVESKHIRPIIVVNKMDLVDDQTKPTMEQYIRDYRQIGYDVIET 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S +KLG++ LL L +V G SGVGKSSL+NALR P L K
Sbjct: 143 STITKLGVEQLLSYLEGHISVFAGQSGVGKSSLLNALR----------------PDLQLK 186
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
++ST GRGKHTTRHV LL + GGG +ADTPGF+ L + + L FPE
Sbjct: 187 ------TNDISTHLGRGKHTTRHVELLEI-GGGLVADTPGFSALELDDIELEELPLYFPE 239
Query: 263 VC 264
C
Sbjct: 240 FC 241
>sp|Q7V9C6|RSGA_PROMM Putative ribosome biogenesis GTPase RsgA OS=Prochlorococcus marinus
(strain MIT 9313) GN=rsgA PE=3 SV=1
Length = 321
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 131/248 (52%), Gaps = 24/248 (9%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
D + LLC R L V VGD+V V +IDW +RR ++ +V R + I PPVAN
Sbjct: 40 TDDEPLRLLCTRRTRLDHRGAAVHVGDRVWVEAIDWQERRAVVGDVEPRQSWINRPPVAN 99
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWG 136
V +++ ++ QP + +RFL+ AE TG+ + L L K +L+ + L RL WG
Sbjct: 100 VTAVVVALAVKQPCFDADQASRFLLSAEQTGVDVHLILTKRDLITSDQLEQQLVRLRGWG 159
Query: 137 YEPLFCSVESKLGLDSLLQRLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF 195
Y P+ SV++ GL +L +L + V GPSGVGK+SL+N L P S
Sbjct: 160 YRPMAVSVQTGEGLGALKNKLSSTRLAVFCGPSGVGKTSLLNQL--LPQLS--------- 208
Query: 196 EPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQS 255
RVG VS + RG+HTTRHV L L G +ADTPGFN+P L +
Sbjct: 209 -----------LRVGAVSGRLKRGRHTTRHVELFRLCEGSLVADTPGFNRPE-LPADLRK 256
Query: 256 LAQTFPEV 263
LA FPE+
Sbjct: 257 LAVLFPEL 264
>sp|Q81WH7|RSGA_BACAN Putative ribosome biogenesis GTPase RsgA OS=Bacillus anthracis
GN=rsgA PE=3 SV=1
Length = 293
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 127/241 (52%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + + G + VF R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQADNPSE--GYVLEVFDRKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE E + + + GY+ LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEKMRETVEAYANDYREMGYDVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
S+ + +D L L +V+ G SGVGKSS++N LR P L
Sbjct: 143 SINTSESIDILKPFLEGCVSVVAGQSGVGKSSMLNVLR----------------PEL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELIAI-GSGLVADTPGFSSLDFIDIEVEDLTYCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>sp|A7Z4J8|RSGA_BACA2 Putative ribosome biogenesis GTPase RsgA OS=Bacillus
amyloliquefaciens (strain FZB42) GN=rsgA PE=3 SV=1
Length = 296
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 29/242 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD V + + D+ G + + +R+ E++ PP++NVD +L+FS
Sbjct: 27 CRGRGIFRKNKITPLVGDYAVYQAEN--DKEGYLLEIKERTNELIRPPISNVDQAVLVFS 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKSRLHTWGYEPLF 141
QP L RFLV E+ GI + + K++L +E + ++ GY+
Sbjct: 85 AVQPAFSTSLLDRFLVLVEANGIHPIICITKMDLAADGESKEAILSYVKDYQAIGYDVYV 144
Query: 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201
S + GL +++ ++TTV G SGVGKSSL+NA+ SP
Sbjct: 145 TSSKENSGLTGIVKHFENKTTVFAGQSGVGKSSLLNAI--SPEL---------------- 186
Query: 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFP 261
+ + E+ST GRGKHTTRHV L+ S GG +ADTPGF+ + ++ L TFP
Sbjct: 187 ----ELKTNEISTHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTGIEEEELGSTFP 241
Query: 262 EV 263
E+
Sbjct: 242 EI 243
>sp|Q0SS84|RSGA_CLOPS Putative ribosome biogenesis GTPase RsgA OS=Clostridium perfringens
(strain SM101 / Type A) GN=rsgA PE=3 SV=1
Length = 287
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 118/237 (49%), Gaps = 26/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD+V +I + +G+IE++ +RS+E++ P VANV ++F+
Sbjct: 24 CKARGKFRYNSLKPMVGDRV---TIKVENGKGVIEDIHERSSELIRPTVANVTQAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L RFL E I + LNK +L EE K ++ GYE LF + +
Sbjct: 81 IKNPDINLDLLNRFLTLCEYNDIHAVVCLNKEDLCTEEEKENLKELINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G D+L +RL TV+ GPSG GKS+L+NA H
Sbjct: 141 EGKGFDALKERLEHNITVLCGPSGAGKSTLLNAFIDREH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K GRGKHTTRH L+ + GYL DTPGF + + + SL FPE
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIDVD-NGYLVDTPGFTTLDVTFIDRDSLKYCFPE 234
>sp|A7GRJ1|RSGA_BACCN Putative ribosome biogenesis GTPase RsgA OS=Bacillus cereus subsp.
cytotoxis (strain NVH 391-98) GN=rsgA PE=3 SV=1
Length = 293
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 129/241 (53%), Gaps = 28/241 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K K LVGD+VV + + G + VF+R E++ PP+ANVD +L+FS
Sbjct: 25 CRGRGVFRKNKITPLVGDQVVFQAENQ--NEGYVLEVFERKNELVRPPIANVDQAILVFS 82
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE---EVLNTWKSRLHTWGYEPLFC 142
+P P L RFLV E I + ++K++LVDE +++ ++ + GY LF
Sbjct: 83 AVEPDFNPGLLDRFLVLIEYHNIKPIICISKMDLVDEPMRKMVESYANDYREMGYAVLFT 142
Query: 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202
SV + ++ L L + +V+ G SGVGKSS++N LR P L
Sbjct: 143 SVHAAESIEILKPFLEECVSVVAGQSGVGKSSMLNVLR----------------PDL--- 183
Query: 203 WFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ + ++S+ GRGKHTTRHV L+ + G G +ADTPGF+ + + + L FPE
Sbjct: 184 ---ELKTNDISSHLGRGKHTTRHVELISI-GSGLVADTPGFSSLDFIDIEVEDLTFCFPE 239
Query: 263 V 263
+
Sbjct: 240 L 240
>sp|Q0TPL7|RSGA_CLOP1 Putative ribosome biogenesis GTPase RsgA OS=Clostridium perfringens
(strain ATCC 13124 / NCTC 8237 / Type A) GN=rsgA PE=3
SV=1
Length = 287
Score = 134 bits (337), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 118/237 (49%), Gaps = 26/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD+V +I + +G+IE++ +RS+E++ P VANV ++F+
Sbjct: 24 CKARGKFRYNSLKPMVGDRV---TIKVENGKGVIEDIHERSSELIRPTVANVTQAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L RFL E I + LNK +L EE K ++ GYE LF + +
Sbjct: 81 IKNPDINLDLLNRFLTLCEYNDIHAVVCLNKEDLCTEEEKENLKELINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G D+L +RL TV+ GPSG GKS+L+N+ H
Sbjct: 141 EGKGFDALKERLEHNITVLCGPSGAGKSTLLNSFIDREH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K GRGKHTTRH L+ + GYL DTPGF + + + SL FPE
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIDVD-NGYLVDTPGFTTLDVTFIDRDSLKYCFPE 234
>sp|Q8XJL9|RSGA_CLOPE Putative ribosome biogenesis GTPase RsgA OS=Clostridium perfringens
(strain 13 / Type A) GN=rsgA PE=3 SV=1
Length = 287
Score = 134 bits (336), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 118/237 (49%), Gaps = 26/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD+V +I + +G+IE++ +RS+E++ P VANV ++F+
Sbjct: 24 CKARGKFRYNSLKPMVGDRV---TIKVENGKGVIEDIHERSSELIRPTVANVTQAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L RFL E I + LNK +L EE K ++ GYE LF + +
Sbjct: 81 IKNPDINLDLLNRFLTLCEYNDIHAVVCLNKEDLCTEEEKENLKELINDIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
G D+L +RL TV+ GPSG GKS+L+N+ H
Sbjct: 141 EGKGFDALKERLEHNITVLCGPSGAGKSTLLNSFIDREH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K GRGKHTTRH L+ + GYL DTPGF + + + SL FPE
Sbjct: 180 -METGSVSEKIGRGKHTTRHSELIDVD-NGYLVDTPGFTTLDVTFIDRDSLKYCFPE 234
>sp|A6LSK4|RSGA_CLOB8 Putative ribosome biogenesis GTPase RsgA OS=Clostridium
beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rsgA
PE=3 SV=1
Length = 290
Score = 131 bits (329), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 123/238 (51%), Gaps = 27/238 (11%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + +VGD V +I +G+IE + +R +E++ P VANV ++F+
Sbjct: 24 CKARGKFRHKDIKPMVGDDV---TIKMEHGKGVIEEIHERKSELVRPTVANVSLAFVVFA 80
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ P + L +FL+ E I + + LNK++LV EE K R++ GYE LF + +
Sbjct: 81 VKNPDINFDLLNKFLILCEYNNIEVIVCLNKIDLVSEEEREEIKKRINVIGYEVLFINAK 140
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G++ L +++R TV GPSG GKS+LIN L + H
Sbjct: 141 KGIGIERLEEKIRGNITVFCGPSGAGKSTLINKLSNKEH--------------------- 179
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT-KQSLAQTFPE 262
G VS K GRGKHTTRH L+ ++ GY+ DTPGF+ + + K SL FPE
Sbjct: 180 -METGNVSVKLGRGKHTTRHSELIEVA-DGYIVDTPGFSTLEIKDLMDKNSLKYCFPE 235
>sp|Q3AC25|RSGA_CARHZ Putative ribosome biogenesis GTPase RsgA OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=rsgA PE=3
SV=1
Length = 290
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 128/243 (52%), Gaps = 34/243 (13%)
Query: 25 LCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLF 84
+C R KK ++L GD+V++ + + G+IE++ R E++ PP+ANVD +LL+F
Sbjct: 23 MCKARGKFKKDNIKILTGDRVIIREL-VPNSEGVIESLLPRKNELIRPPIANVDQVLLVF 81
Query: 85 SMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLF 141
+ P + R LV A + + + L NK +LV+ E + +K L P
Sbjct: 82 AFADPFPSTELIDRLLVMAYALRLEVVLVFNKFDLVNPESQKLFEYYKKIL------PKV 135
Query: 142 CSVESK--LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
++ ++ G+D L L + +V+ GPSGVGKS+LIN L +
Sbjct: 136 VAITARGDTGIDELTDYLNQKISVLAGPSGVGKSTLINRL------------------VP 177
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
G+K GEVS K RG+HTTRHV L+ L GG++ADTPGF+ +L ++ K L
Sbjct: 178 GAKL----ATGEVSPKIKRGRHTTRHVELIKLPFGGFIADTPGFSNLTLPEMDKLELQSY 233
Query: 260 FPE 262
FPE
Sbjct: 234 FPE 236
>sp|A5N7Y7|RSGA_CLOK5 Putative ribosome biogenesis GTPase RsgA OS=Clostridium kluyveri
(strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rsgA PE=3
SV=1
Length = 287
Score = 127 bits (319), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 26/223 (11%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV I +G+I+ + R +++ P VANV L++F+ + P++ L +F
Sbjct: 38 MVGDKV---EIKLERDQGIIDEICPRISQLKRPAVANVTQALVVFAFNHPEINEDLLNKF 94
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
L+ E + + NK++L D+E + GYE +F + G+D + ++L+D
Sbjct: 95 LISCEFNNLKPIVCFNKLDLADKEKKLDVIDMIRNTGYEVIFLKAKEGYGIDKVREKLKD 154
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
TV+ GPSGVGKS+++NA I G + E G++S K RG
Sbjct: 155 NITVLCGPSGVGKSTILNA-------------------IYGKELME---TGQISHKLNRG 192
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
KHTTRH ++ L G++ DTPGF+ + +TK L FPE
Sbjct: 193 KHTTRHSEIIELE-DGFMVDTPGFSSLDIGHITKDKLQYCFPE 234
>sp|B9E1E8|RSGA_CLOK1 Putative ribosome biogenesis GTPase RsgA OS=Clostridium kluyveri
(strain NBRC 12016) GN=rsgA PE=3 SV=1
Length = 287
Score = 127 bits (319), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 26/223 (11%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV I +G+I+ + R +++ P VANV L++F+ + P++ L +F
Sbjct: 38 MVGDKV---EIKLERDQGIIDEICPRISQLKRPAVANVTQALVVFAFNHPEINEDLLNKF 94
Query: 100 LVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRD 159
L+ E + + NK++L D+E + GYE +F + G+D + ++L+D
Sbjct: 95 LISCEFNNLKPIVCFNKLDLADKEKKLDVIDMIRNTGYEVIFLKAKEGYGIDKVREKLKD 154
Query: 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219
TV+ GPSGVGKS+++NA I G + E G++S K RG
Sbjct: 155 NITVLCGPSGVGKSTILNA-------------------IYGKELME---TGQISHKLNRG 192
Query: 220 KHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
KHTTRH ++ L G++ DTPGF+ + +TK L FPE
Sbjct: 193 KHTTRHSEIIELE-DGFMVDTPGFSSLDIGHITKDKLQYCFPE 234
>sp|Q895P5|RSGA_CLOTE Putative ribosome biogenesis GTPase RsgA OS=Clostridium tetani
(strain Massachusetts / E88) GN=rsgA PE=3 SV=1
Length = 290
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 33/227 (14%)
Query: 40 LVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRF 99
+VGDKV + ID + +G IE +F+R +++ P V+N+ +++F+ P + L +F
Sbjct: 38 MVGDKVEI-EIDN-NSKGTIEKIFERKNKLIRPAVSNISQAIIVFAFKNPNINLDLLNKF 95
Query: 100 LVEAESTGIPLTLALNKVELVD----EEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155
L++ E I +A NKV+LV+ EEV++ KS GYE ++ + + +G++ + +
Sbjct: 96 LLQCEYNEINAVVAFNKVDLVENPEKEEVVDIIKS----AGYEVIYLNAKEGMGIEKIRE 151
Query: 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215
+L+ V+ GPSG GKS++IN L +G E G++S K
Sbjct: 152 KLKGNLNVLCGPSGAGKSTIINKL-------------------VGKDVME---TGQISEK 189
Query: 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
RGKHTTRH L+ + G+L DTPGF+ S+ + K+ + FPE
Sbjct: 190 LKRGKHTTRHSELIEVE-DGFLVDTPGFSSLSIEDIEKEEIQFLFPE 235
>sp|B8I262|RSGA_CLOCE Putative ribosome biogenesis GTPase RsgA OS=Clostridium
cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584
/ H10) GN=rsgA PE=3 SV=1
Length = 305
Score = 124 bits (312), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 23/237 (9%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + +K L GD+V ID + G I+ + RS+E++ P VANVD + ++ +
Sbjct: 27 CKPRGVFRKNSVTPLPGDRVGFSIIDGDKKLGNIDEILPRSSELVRPAVANVDQIAIIVA 86
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L + L+ AE+ I + + +NK++L D++ ++ GY+ + S
Sbjct: 87 AKAPNPDYMLLDKLLITAETRNIRVLICVNKIDL-DDDTAKIVRNAYSPAGYDVIEISSV 145
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+G L + L+ TV G SGVGKS+++N + +++W
Sbjct: 146 RNIGYKRLKEELKGHITVFAGQSGVGKSTILNHI-----------MESWV---------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G VS K RGKHTTRH LL L GGY+ADTPGF+ ++ + L + +PE
Sbjct: 185 -METGSVSNKIERGKHTTRHAELLELKYGGYVADTPGFSSFEIIDIPYNQLERYYPE 240
>sp|Q8R9T7|RSGA_THETN Putative ribosome biogenesis GTPase RsgA OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=rsgA PE=3 SV=1
Length = 295
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R +K LVGD V ++ ++ G I + R +++ PPVANVD +++F+
Sbjct: 27 CRARGKFRKDNIIPLVGDIAEVQLVN--EKEGYILEILPRKNQLVRPPVANVDQAIIVFA 84
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
+ +P++ L + +V AE I + +NKV++ E + + GY+ + S
Sbjct: 85 ISKPEINRVLLDKMIVVAEINKIEPVVCINKVDMEKREEVENLINVYRKIGYKAVGTSAV 144
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ G++ L L+D+ + GPSGVGKSSLIN ++S+
Sbjct: 145 TGEGMEELKSYLKDKISFFAGPSGVGKSSLINLIQSNIRL-------------------- 184
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
+ GE+S K GRG+HTTR V LPL GGY+ DTPGF + + K+ L F E
Sbjct: 185 --KTGELSEKLGRGRHTTRSVEFLPLDFGGYVLDTPGFTALE-IDIPKEELRNYFRE 238
>sp|A7GG89|RSGA_CLOBL Putative ribosome biogenesis GTPase RsgA OS=Clostridium botulinum
(strain Langeland / NCTC 10281 / Type F) GN=rsgA PE=3
SV=1
Length = 292
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E S + GY+ +F + E
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAE 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 KERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPE 237
>sp|B1IIL4|RSGA_CLOBK Putative ribosome biogenesis GTPase RsgA OS=Clostridium botulinum
(strain Okra / Type B1) GN=rsgA PE=3 SV=1
Length = 292
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E S + GY+ +F + E
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAE 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 KERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPE 237
>sp|Q5WFL1|RSGA_BACSK Putative ribosome biogenesis GTPase RsgA OS=Bacillus clausii
(strain KSM-K16) GN=rsgA PE=3 SV=1
Length = 293
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 121/249 (48%), Gaps = 28/249 (11%)
Query: 21 GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHL 80
G + C R + +K K+ LVGD V + + D G + + +R ++ PP+ANVD
Sbjct: 20 GALIQCRGRGVFRKRKQTPLVGDYVEFEAENETD--GYVMAIKERKNQLNRPPIANVDQA 77
Query: 81 LLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV---DEEVLNTWKSRLHTWGY 137
+L+FS +P L RFLV E I L ++K +L+ + + L + GY
Sbjct: 78 ILVFSAKEPDFHTLLLDRFLVHIEQHDIKPVLIISKTDLLEASERDALTRQVAMYEQIGY 137
Query: 138 EPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197
L+ S + LL L +Q +VI G SGVGKSSL+NAL +P A +
Sbjct: 138 PVLYTSTKQADDPSELLPLLANQVSVIAGQSGVGKSSLLNAL--APEAKIETN------- 188
Query: 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLA 257
E+S GRG+HTTRH LLP+ G G +ADTPGF+ + + L
Sbjct: 189 -------------EISRHLGRGRHTTRHTELLPI-GEGLVADTPGFSSLEFTDMEAEDLR 234
Query: 258 QTFPEVCAV 266
FPE ++
Sbjct: 235 FCFPEFLSL 243
>sp|C3L0K4|RSGA_CLOB6 Putative ribosome biogenesis GTPase RsgA OS=Clostridium botulinum
(strain 657 / Type Ba4) GN=rsgA PE=3 SV=1
Length = 292
Score = 120 bits (302), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 120/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + + NK++LV++E S + GY+ +F + +
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKVIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 EERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLYCIPE 237
>sp|Q8ER21|RSGA2_OCEIH Putative ribosome biogenesis GTPase RsgA 2 OS=Oceanobacillus
iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /
HTE831) GN=rsgA2 PE=3 SV=1
Length = 293
Score = 120 bits (302), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 118/246 (47%), Gaps = 28/246 (11%)
Query: 23 ELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLL 82
+ +C R L + K LVGD V D D G I + +RS E++ PP+AN+D ++
Sbjct: 22 QFVCKGRGLFRNKKITPLVGDYVEFEPKD--DNEGYIMEIKERSNELVRPPIANIDQAII 79
Query: 83 LFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT---WKSRLHTWGYEP 139
+ S P L RFLV ES I + + KV+L++E+ L +K GY
Sbjct: 80 VSSAVDPDFTTLLLDRFLVLIESKHIQPIILITKVDLLNEDQLENIKLYKQHYEKIGYRV 139
Query: 140 LFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL 199
S +++ L L ++ +V G SGVGKSSLIN L S A
Sbjct: 140 ELVSSKNQDLLPELEPYFDEKVSVFAGQSGVGKSSLINVLDPSLLLETA----------- 188
Query: 200 GSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259
E+S GRGKHTTRHV L+ + G G +ADTPGF+ ++ + LA +
Sbjct: 189 -----------EISKSLGRGKHTTRHVELMKI-GNGLVADTPGFSVLEFREIEAEELADS 236
Query: 260 FPEVCA 265
FPE A
Sbjct: 237 FPEFNA 242
>sp|C1FSS3|RSGA_CLOBJ Putative ribosome biogenesis GTPase RsgA OS=Clostridium botulinum
(strain Kyoto / Type A2) GN=rsgA PE=3 SV=1
Length = 292
Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E S + GY+ +F + +
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 EERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPE 237
>sp|A5I4T1|RSGA_CLOBH Putative ribosome biogenesis GTPase RsgA OS=Clostridium botulinum
(strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rsgA
PE=3 SV=1
Length = 292
Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E S + GY+ +F + +
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 EERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPE 237
>sp|A7FW69|RSGA_CLOB1 Putative ribosome biogenesis GTPase RsgA OS=Clostridium botulinum
(strain ATCC 19397 / Type A) GN=rsgA PE=3 SV=1
Length = 292
Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + SID + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SIDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E S + GY+ +F + +
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 EERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPE 237
>sp|B9K7Z8|RSGA_THENN Putative ribosome biogenesis GTPase RsgA OS=Thermotoga neapolitana
(strain ATCC 49049 / DSM 4359 / NS-E) GN=rsgA PE=3 SV=1
Length = 295
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 128/253 (50%), Gaps = 36/253 (14%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVV-----VGSIDWVDRRGMIENVFQRSTEILD 71
+++TG LLC +R + ++ VGD+V GS G+IENV R ++
Sbjct: 21 DEETGERLLCKLRGKFRLQNLKIYVGDRVEYTPDGTGS-------GVIENVLHRKNLLVK 73
Query: 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK-- 129
P VANVD +L+ ++ P+ + + +FLV E + L +NK+++ DEE L K
Sbjct: 74 PHVANVDQAILVVTVKMPETSTYIIDKFLVLTEKNELETVLVINKMDIYDEEDLEKVKEL 133
Query: 130 SRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAA 189
R+++ Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+ +P
Sbjct: 134 ERIYSKLYPIVKTSAKTGMGIEELKKYLKGKISTMAGLSGVGKSSLLNAI--NP------ 185
Query: 190 DVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249
G K RV EVS K RG+HTT LL GGY+ DTPGF +
Sbjct: 186 ----------GLKL----RVSEVSQKLQRGRHTTTSAQLLRFDFGGYVVDTPGFANLEIG 231
Query: 250 KVTKQSLAQTFPE 262
+ + L F E
Sbjct: 232 DIEPEELKYYFKE 244
>sp|B1KX53|RSGA_CLOBM Putative ribosome biogenesis GTPase RsgA OS=Clostridium botulinum
(strain Loch Maree / Type A3) GN=rsgA PE=3 SV=1
Length = 292
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 119/237 (50%), Gaps = 25/237 (10%)
Query: 26 CVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFS 85
C R + + ++GD V + S+D + +G IE +++R +E+ P VANV L++FS
Sbjct: 26 CKARGKFRHTELTPMIGDYVEI-SVDK-NNKGAIEKIYERRSELFRPAVANVTQALVVFS 83
Query: 86 MDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145
P + L +FL+ E + + NK++LV++E S + GY+ +F + +
Sbjct: 84 FKNPDINIDLLNKFLLLCEYNNLKAIVCFNKMDLVNKEDYKDIISMIEQAGYDIIFLNAK 143
Query: 146 SKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205
+ +D + + ++D TV GPSGVGKS+++N I+G E
Sbjct: 144 EERNMDIIKKLIKDNVTVFCGPSGVGKSTMLN-------------------KIIGK---E 181
Query: 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262
G +S K RGKHTTRH L+ + G L DTPGF+ + + K+ L PE
Sbjct: 182 TMITGNISEKLKRGKHTTRHSELIYVD-EGLLVDTPGFSSLDINFMEKEDLLHCIPE 237
>sp|A8FD43|RSGA_BACP2 Putative ribosome biogenesis GTPase RsgA OS=Bacillus pumilus
(strain SAFR-032) GN=rsgA PE=3 SV=1
Length = 298
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 125/253 (49%), Gaps = 29/253 (11%)
Query: 15 DCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74
D + ++G + C R + +K K LVGD VV + + D+ G + V +R+ E++ PP+
Sbjct: 18 DESQESGKVVQCRARGIFRKNKITPLVGDYVVYQADN--DKEGYLLEVKERTNELVRPPI 75
Query: 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV----DEEVLNTWKS 130
+NVD +L+FS +P L RFLV E+ I + + K++L+ + E + +
Sbjct: 76 SNVDQAVLVFSAAEPTFSTSLLDRFLVLVEANHIEPIICITKMDLLKTDEERETIMAYAD 135
Query: 131 RLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAAD 190
GYE S G++ L ++ TV G SGVGKSSL+NA+ SP + D
Sbjct: 136 DYRQIGYEVHLTSTIEGDGIEKLTPHFHNKITVFAGQSGVGKSSLLNAM--SPELALKTD 193
Query: 191 VDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250
++S+ GRGKHTTRHV L+ + G +ADTPGF+
Sbjct: 194 --------------------DISSHLGRGKHTTRHVELIR-TANGLIADTPGFSSLEFTG 232
Query: 251 VTKQSLAQTFPEV 263
+ + L F ++
Sbjct: 233 IEAEDLGLYFLDI 245
>sp|Q9X242|RSGA_THEMA Putative ribosome biogenesis GTPase RsgA OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=rsgA PE=1 SV=1
Length = 295
Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 127/248 (51%), Gaps = 26/248 (10%)
Query: 17 NDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVAN 76
+++TG +LC +R + ++ VGD+V + G+IENV R + P VAN
Sbjct: 21 DEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDET--GSGVIENVLHRKNLLTKPHVAN 78
Query: 77 VDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWK--SRLHT 134
VD ++L+ ++ P+ + + +FLV AE + + +NK++L DE+ L + +++
Sbjct: 79 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYS 138
Query: 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNW 194
Y + S ++ +G++ L + L+ + + + G SGVGKSSL+NA+ +P
Sbjct: 139 GLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI--NP----------- 185
Query: 195 FEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQ 254
G K RV EVS K RG+HTT LL GGY+ DTPGF + + +
Sbjct: 186 -----GLKL----RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 236
Query: 255 SLAQTFPE 262
L F E
Sbjct: 237 ELKHYFKE 244
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,758,129
Number of Sequences: 539616
Number of extensions: 4244392
Number of successful extensions: 24234
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 218
Number of HSP's that attempted gapping in prelim test: 23266
Number of HSP's gapped (non-prelim): 603
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)