Query 023887
Match_columns 276
No_of_seqs 286 out of 2708
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:22:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1162 Predicted GTPases [Gen 100.0 1.6E-51 3.4E-56 374.4 24.4 241 1-266 5-249 (301)
2 PRK12289 GTPase RsgA; Reviewed 100.0 8.6E-48 1.9E-52 361.1 26.5 242 1-266 9-256 (352)
3 PRK12288 GTPase RsgA; Reviewed 100.0 5.8E-46 1.3E-50 348.4 25.5 237 1-266 40-290 (347)
4 PRK00098 GTPase RsgA; Reviewed 100.0 2.5E-44 5.4E-49 331.5 27.0 240 1-266 1-249 (298)
5 cd01854 YjeQ_engC YjeQ/EngC. 100.0 5.1E-44 1.1E-48 327.8 25.6 236 4-266 2-246 (287)
6 TIGR00157 ribosome small subun 100.0 5E-42 1.1E-46 308.1 21.8 203 39-266 1-204 (245)
7 PRK01889 GTPase RsgA; Reviewed 100.0 9.7E-39 2.1E-43 300.9 22.8 234 1-266 29-279 (356)
8 PF03193 DUF258: Protein of un 99.9 4.8E-26 1E-30 191.8 6.9 119 126-266 2-120 (161)
9 cd01858 NGP_1 NGP-1. Autoanti 99.9 1.9E-22 4.2E-27 168.6 15.6 142 72-243 4-157 (157)
10 cd01857 HSR1_MMR1 HSR1/MMR1. 99.9 7E-22 1.5E-26 162.6 14.1 134 71-245 6-140 (141)
11 cd01849 YlqF_related_GTPase Yl 99.8 4.9E-20 1.1E-24 153.8 15.5 135 78-243 1-155 (155)
12 TIGR03596 GTPase_YlqF ribosome 99.8 6.3E-20 1.4E-24 167.4 16.1 148 69-250 14-180 (276)
13 PRK09563 rbgA GTPase YlqF; Rev 99.8 4.1E-19 8.9E-24 163.0 17.2 147 70-250 18-183 (287)
14 cd01856 YlqF YlqF. Proteins o 99.8 1.5E-19 3.4E-24 153.2 13.0 142 68-243 11-170 (171)
15 cd01859 MJ1464 MJ1464. This f 99.8 5.3E-19 1.1E-23 147.2 14.6 143 69-243 5-156 (156)
16 COG1161 Predicted GTPases [Gen 99.8 8.8E-19 1.9E-23 163.3 14.3 145 72-250 30-194 (322)
17 COG2884 FtsE Predicted ATPase 99.8 1.7E-19 3.7E-24 154.5 7.3 122 137-275 4-197 (223)
18 cd04178 Nucleostemin_like Nucl 99.8 4.6E-18 9.9E-23 145.2 15.4 136 78-243 1-172 (172)
19 cd01855 YqeH YqeH. YqeH is an 99.8 3.2E-18 7E-23 147.2 13.2 146 73-243 31-190 (190)
20 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 8.6E-19 1.9E-23 157.3 9.1 118 136-276 6-200 (254)
21 COG1120 FepC ABC-type cobalami 99.8 7.6E-19 1.7E-23 158.2 8.3 120 137-276 5-200 (258)
22 COG1126 GlnQ ABC-type polar am 99.8 1.1E-18 2.5E-23 152.1 7.4 120 137-275 5-196 (240)
23 KOG1424 Predicted GTP-binding 99.8 8.1E-18 1.8E-22 161.3 13.3 166 55-250 150-376 (562)
24 COG1116 TauB ABC-type nitrate/ 99.7 4.7E-18 1E-22 151.2 9.3 115 137-276 6-192 (248)
25 COG1127 Ttg2A ABC-type transpo 99.7 4.1E-18 8.9E-23 150.7 7.0 123 137-276 11-207 (263)
26 cd03216 ABC_Carb_Monos_I This 99.7 6.6E-18 1.4E-22 142.5 8.0 120 137-275 3-142 (163)
27 PRK13796 GTPase YqeH; Provisio 99.7 8.2E-17 1.8E-21 152.5 16.3 159 75-262 67-241 (365)
28 COG1125 OpuBA ABC-type proline 99.7 3.2E-18 6.8E-23 152.6 5.2 121 136-276 3-197 (309)
29 TIGR03597 GTPase_YqeH ribosome 99.7 8.3E-17 1.8E-21 152.2 15.0 159 73-260 60-233 (360)
30 COG3839 MalK ABC-type sugar tr 99.7 1.1E-17 2.4E-22 155.9 8.1 118 136-275 5-194 (338)
31 COG1136 SalX ABC-type antimicr 99.7 1.2E-17 2.6E-22 147.8 7.9 121 139-275 6-203 (226)
32 KOG2484 GTPase [General functi 99.7 4.6E-17 1E-21 152.2 10.4 152 71-252 141-316 (435)
33 COG1124 DppF ABC-type dipeptid 99.7 4.4E-17 9.5E-22 144.4 8.8 120 137-275 6-202 (252)
34 PRK13537 nodulation ABC transp 99.7 3.8E-17 8.2E-22 151.3 8.7 120 136-276 9-199 (306)
35 cd03229 ABC_Class3 This class 99.7 4.8E-17 1E-21 138.8 8.7 121 137-275 3-161 (178)
36 cd03218 ABC_YhbG The ABC trans 99.7 7.3E-17 1.6E-21 142.7 9.2 120 137-275 3-193 (232)
37 cd03259 ABC_Carb_Solutes_like 99.7 7.5E-17 1.6E-21 140.9 9.0 117 137-275 3-191 (213)
38 COG0411 LivG ABC-type branched 99.7 1.6E-17 3.6E-22 147.1 4.8 124 138-276 8-211 (250)
39 cd03230 ABC_DR_subfamily_A Thi 99.7 9.6E-17 2.1E-21 136.4 9.0 117 138-275 4-155 (173)
40 PRK13536 nodulation factor exp 99.7 6.4E-17 1.4E-21 151.9 8.7 121 135-276 42-233 (340)
41 cd03261 ABC_Org_Solvent_Resist 99.7 7.8E-17 1.7E-21 143.0 8.3 122 137-275 3-197 (235)
42 COG1160 Predicted GTPases [Gen 99.7 3.3E-16 7.1E-21 149.3 12.7 171 62-267 69-262 (444)
43 cd03225 ABC_cobalt_CbiO_domain 99.7 8.6E-17 1.9E-21 140.2 8.1 118 138-275 3-194 (211)
44 cd03246 ABCC_Protease_Secretio 99.7 1E-16 2.2E-21 136.1 8.2 119 137-275 3-156 (173)
45 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 1.2E-16 2.6E-21 140.0 8.5 124 137-276 3-202 (218)
46 cd03226 ABC_cobalt_CbiO_domain 99.7 1.4E-16 3E-21 138.6 8.7 115 138-275 3-186 (205)
47 COG1131 CcmA ABC-type multidru 99.7 9.6E-17 2.1E-21 147.8 8.1 118 137-275 7-197 (293)
48 TIGR02673 FtsE cell division A 99.7 1.3E-16 2.8E-21 139.4 8.5 122 137-275 4-197 (214)
49 cd03266 ABC_NatA_sodium_export 99.7 1.3E-16 2.9E-21 139.7 8.6 118 137-275 4-196 (218)
50 cd03217 ABC_FeS_Assembly ABC-t 99.7 1.6E-16 3.4E-21 138.1 8.9 122 137-275 3-164 (200)
51 cd03265 ABC_DrrA DrrA is the A 99.7 1.7E-16 3.6E-21 139.5 8.8 118 137-275 3-192 (220)
52 cd03224 ABC_TM1139_LivF_branch 99.7 1.1E-16 2.4E-21 140.4 7.7 120 137-275 3-192 (222)
53 cd03301 ABC_MalK_N The N-termi 99.7 2E-16 4.4E-21 138.1 9.3 117 137-275 3-191 (213)
54 TIGR00960 3a0501s02 Type II (G 99.7 1.2E-16 2.5E-21 140.0 7.7 122 137-275 4-198 (216)
55 cd03262 ABC_HisP_GlnQ_permease 99.7 1.9E-16 4E-21 138.2 8.8 121 137-275 3-195 (213)
56 TIGR01288 nodI ATP-binding ABC 99.7 1.6E-16 3.4E-21 146.7 8.7 118 137-275 7-195 (303)
57 cd03268 ABC_BcrA_bacitracin_re 99.7 1.6E-16 3.6E-21 138.3 8.3 116 138-275 4-186 (208)
58 COG1122 CbiO ABC-type cobalt t 99.7 2.2E-16 4.8E-21 141.1 9.2 120 137-276 6-200 (235)
59 COG3638 ABC-type phosphate/pho 99.7 7E-17 1.5E-21 142.5 5.7 124 136-276 5-209 (258)
60 TIGR03410 urea_trans_UrtE urea 99.7 2E-16 4.4E-21 139.7 8.4 120 137-275 3-192 (230)
61 cd03228 ABCC_MRP_Like The MRP 99.7 2.6E-16 5.7E-21 133.4 8.6 118 138-275 4-155 (171)
62 cd03222 ABC_RNaseL_inhibitor T 99.7 5.2E-17 1.1E-21 139.3 4.3 123 137-275 3-132 (177)
63 COG3842 PotA ABC-type spermidi 99.7 1.6E-16 3.4E-21 148.9 7.6 118 136-275 7-197 (352)
64 cd03293 ABC_NrtD_SsuB_transpor 99.7 4E-16 8.6E-21 137.1 9.4 114 137-275 3-192 (220)
65 cd03231 ABC_CcmA_heme_exporter 99.7 5.4E-16 1.2E-20 134.8 10.1 118 137-275 3-185 (201)
66 PRK13538 cytochrome c biogenes 99.7 4.1E-16 8.8E-21 135.7 9.3 119 137-276 4-190 (204)
67 PRK09536 btuD corrinoid ABC tr 99.7 1.9E-16 4.2E-21 151.6 7.9 120 137-276 6-200 (402)
68 KOG2423 Nucleolar GTPase [Gene 99.7 4.8E-16 1E-20 145.3 10.3 148 72-250 209-369 (572)
69 cd03269 ABC_putative_ATPase Th 99.7 2.8E-16 6E-21 137.1 8.2 114 138-275 4-188 (210)
70 cd03258 ABC_MetN_methionine_tr 99.7 2.5E-16 5.3E-21 139.5 8.0 122 137-275 4-201 (233)
71 TIGR03608 L_ocin_972_ABC putat 99.7 2.4E-16 5.3E-21 136.8 7.7 121 139-275 3-194 (206)
72 COG4988 CydD ABC-type transpor 99.6 2.9E-16 6.4E-21 153.2 9.0 119 138-276 324-516 (559)
73 TIGR02868 CydC thiol reductant 99.6 2.4E-16 5.1E-21 155.4 8.5 120 135-275 335-529 (529)
74 PRK13540 cytochrome c biogenes 99.6 4.1E-16 8.8E-21 135.3 8.9 118 137-275 4-187 (200)
75 TIGR01188 drrA daunorubicin re 99.6 1.8E-16 3.9E-21 146.3 7.0 112 144-276 3-185 (302)
76 cd03292 ABC_FtsE_transporter F 99.6 2.8E-16 6E-21 137.2 7.9 122 137-275 3-196 (214)
77 PRK11650 ugpC glycerol-3-phosp 99.6 3.5E-16 7.5E-21 147.8 8.7 117 137-275 6-195 (356)
78 PRK10908 cell division protein 99.6 3.5E-16 7.6E-21 137.7 8.1 121 138-275 5-197 (222)
79 PRK14250 phosphate ABC transpo 99.6 4.4E-16 9.5E-21 139.0 8.8 119 137-275 6-192 (241)
80 COG4152 ABC-type uncharacteriz 99.6 1.3E-16 2.8E-21 141.6 5.0 116 137-276 5-191 (300)
81 PRK13647 cbiO cobalt transport 99.6 3E-16 6.6E-21 142.9 7.6 120 137-276 7-199 (274)
82 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 5.2E-16 1.1E-20 137.9 8.9 119 137-276 4-194 (236)
83 cd03214 ABC_Iron-Siderophores_ 99.6 1.7E-16 3.6E-21 135.7 5.5 123 138-275 3-158 (180)
84 cd03264 ABC_drug_resistance_li 99.6 4.2E-16 9.2E-21 136.0 8.0 117 137-275 3-189 (211)
85 cd03296 ABC_CysA_sulfate_impor 99.6 6.1E-16 1.3E-20 137.7 9.1 124 137-275 5-197 (239)
86 PRK13644 cbiO cobalt transport 99.6 3.9E-16 8.4E-21 142.2 8.0 121 137-276 4-197 (274)
87 PRK11614 livF leucine/isoleuci 99.6 3.9E-16 8.5E-21 138.7 7.8 120 137-275 8-197 (237)
88 TIGR02211 LolD_lipo_ex lipopro 99.6 5E-16 1.1E-20 136.3 8.4 123 138-276 5-203 (221)
89 cd03263 ABC_subfamily_A The AB 99.6 5.2E-16 1.1E-20 136.2 8.4 117 138-275 4-192 (220)
90 cd03235 ABC_Metallic_Cations A 99.6 6.5E-16 1.4E-20 135.0 8.9 124 138-276 3-193 (213)
91 PRK10895 lipopolysaccharide AB 99.6 3.8E-16 8.1E-21 139.1 7.5 120 137-275 6-197 (241)
92 COG1129 MglA ABC-type sugar tr 99.6 3.2E-16 7E-21 152.1 7.6 121 137-276 11-206 (500)
93 cd03247 ABCC_cytochrome_bd The 99.6 4.1E-16 9E-21 132.9 7.4 117 138-275 4-157 (178)
94 PRK13543 cytochrome c biogenes 99.6 8.9E-16 1.9E-20 134.7 9.7 117 137-276 14-198 (214)
95 TIGR01189 ccmA heme ABC export 99.6 1E-15 2.2E-20 132.6 9.8 117 138-275 4-187 (198)
96 TIGR02314 ABC_MetN D-methionin 99.6 5.1E-16 1.1E-20 146.0 8.6 123 137-276 4-202 (343)
97 COG1135 AbcC ABC-type metal io 99.6 2.6E-16 5.5E-21 143.7 6.3 112 148-276 20-203 (339)
98 PRK11000 maltose/maltodextrin 99.6 4.9E-16 1.1E-20 147.4 8.5 118 136-275 5-194 (369)
99 cd03219 ABC_Mj1267_LivG_branch 99.6 6.2E-16 1.3E-20 137.0 8.6 123 138-275 4-203 (236)
100 PRK13638 cbiO cobalt transport 99.6 5.9E-16 1.3E-20 140.5 8.7 121 137-275 4-196 (271)
101 PRK11153 metN DL-methionine tr 99.6 4.4E-16 9.5E-21 146.3 8.0 123 137-276 4-202 (343)
102 PRK11629 lolD lipoprotein tran 99.6 5.7E-16 1.2E-20 137.4 8.2 124 137-276 8-207 (233)
103 COG1117 PstB ABC-type phosphat 99.6 3.7E-16 8E-21 136.3 6.7 127 136-275 9-208 (253)
104 COG3845 ABC-type uncharacteriz 99.6 3.8E-16 8.2E-21 149.7 7.3 120 138-276 8-201 (501)
105 TIGR01166 cbiO cobalt transpor 99.6 7.9E-16 1.7E-20 132.3 8.7 113 146-276 4-188 (190)
106 cd03215 ABC_Carb_Monos_II This 99.6 5.4E-16 1.2E-20 132.8 7.6 108 149-275 15-164 (182)
107 cd03256 ABC_PhnC_transporter A 99.6 6.8E-16 1.5E-20 137.1 8.6 62 137-210 3-66 (241)
108 PRK09493 glnQ glutamine ABC tr 99.6 5.7E-16 1.2E-20 137.8 8.1 122 137-276 4-197 (240)
109 PRK13539 cytochrome c biogenes 99.6 8.3E-16 1.8E-20 134.2 8.9 117 137-276 5-188 (207)
110 TIGR03873 F420-0_ABC_ATP propo 99.6 7.3E-16 1.6E-20 138.6 8.6 125 137-276 4-198 (256)
111 cd03257 ABC_NikE_OppD_transpor 99.6 9.5E-16 2.1E-20 134.9 9.0 122 137-275 4-206 (228)
112 PRK11432 fbpC ferric transport 99.6 5.9E-16 1.3E-20 145.9 8.2 118 136-275 8-197 (351)
113 PRK10584 putative ABC transpor 99.6 9.2E-16 2E-20 135.4 8.7 123 137-275 9-207 (228)
114 TIGR01186 proV glycine betaine 99.6 4.7E-16 1E-20 147.2 7.3 117 144-276 3-191 (363)
115 PRK10247 putative ABC transpor 99.6 8.6E-16 1.9E-20 135.7 8.5 120 137-276 10-199 (225)
116 COG3840 ThiQ ABC-type thiamine 99.6 6.3E-16 1.4E-20 132.0 7.2 96 158-275 24-190 (231)
117 cd03213 ABCG_EPDR ABCG transpo 99.6 1.4E-15 3E-20 131.7 9.4 118 137-275 6-171 (194)
118 TIGR01978 sufC FeS assembly AT 99.6 1.3E-15 2.9E-20 135.3 9.5 126 137-275 3-204 (243)
119 cd03295 ABC_OpuCA_Osmoprotecti 99.6 8.9E-16 1.9E-20 136.9 8.4 118 138-275 4-196 (242)
120 COG4987 CydC ABC-type transpor 99.6 4.2E-16 9.1E-21 150.7 6.7 121 135-275 337-533 (573)
121 PRK10575 iron-hydroxamate tran 99.6 8.7E-16 1.9E-20 139.0 8.4 126 136-276 13-209 (265)
122 PRK11248 tauB taurine transpor 99.6 1.4E-15 3E-20 137.1 9.5 114 137-275 4-189 (255)
123 COG0410 LivF ABC-type branched 99.6 8.3E-16 1.8E-20 135.3 7.8 121 136-275 5-197 (237)
124 PRK09452 potA putrescine/sperm 99.6 8.8E-16 1.9E-20 146.0 8.5 118 136-275 16-205 (375)
125 PRK13635 cbiO cobalt transport 99.6 7.3E-16 1.6E-20 140.8 7.6 121 136-276 7-202 (279)
126 TIGR03265 PhnT2 putative 2-ami 99.6 7.1E-16 1.5E-20 145.5 7.8 118 136-275 6-195 (353)
127 PRK11264 putative amino-acid A 99.6 1.2E-15 2.6E-20 136.5 8.7 124 137-275 6-204 (250)
128 cd03232 ABC_PDR_domain2 The pl 99.6 1.5E-15 3.4E-20 131.1 9.1 117 137-275 6-168 (192)
129 TIGR03522 GldA_ABC_ATP gliding 99.6 6.8E-16 1.5E-20 142.4 7.2 119 137-276 5-193 (301)
130 PRK13652 cbiO cobalt transport 99.6 9.5E-16 2.1E-20 139.8 8.1 120 137-276 6-199 (277)
131 TIGR03258 PhnT 2-aminoethylpho 99.6 8.6E-16 1.9E-20 145.4 8.0 119 135-275 6-199 (362)
132 PRK11247 ssuB aliphatic sulfon 99.6 1.3E-15 2.9E-20 137.7 8.9 116 135-275 13-194 (257)
133 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 1.9E-16 4.1E-21 131.1 3.1 122 138-275 4-127 (144)
134 cd00267 ABC_ATPase ABC (ATP-bi 99.6 1.3E-15 2.8E-20 127.1 8.2 118 138-275 3-140 (157)
135 PRK11231 fecE iron-dicitrate t 99.6 9.9E-16 2.1E-20 137.7 8.0 124 137-275 5-198 (255)
136 TIGR03740 galliderm_ABC gallid 99.6 1.6E-15 3.5E-20 133.5 9.2 114 138-275 4-184 (223)
137 PRK11831 putative ABC transpor 99.6 1E-15 2.2E-20 139.0 8.0 122 137-275 10-204 (269)
138 cd03294 ABC_Pro_Gly_Bertaine T 99.6 7.3E-16 1.6E-20 139.9 7.1 121 139-275 29-221 (269)
139 PRK10851 sulfate/thiosulfate t 99.6 1.1E-15 2.4E-20 144.3 8.4 118 137-276 5-198 (353)
140 TIGR02315 ABC_phnC phosphonate 99.6 1.4E-15 3E-20 135.4 8.4 62 137-210 4-67 (243)
141 PRK13650 cbiO cobalt transport 99.6 9.3E-16 2E-20 140.0 7.3 119 137-275 7-201 (279)
142 PRK11124 artP arginine transpo 99.6 1.2E-15 2.6E-20 135.9 7.9 124 137-275 5-201 (242)
143 COG2274 SunT ABC-type bacterio 99.6 1.2E-15 2.5E-20 155.0 8.6 121 135-275 472-668 (709)
144 PRK10253 iron-enterobactin tra 99.6 1.6E-15 3.5E-20 137.2 8.6 126 135-275 8-204 (265)
145 PRK10619 histidine/lysine/argi 99.6 1.4E-15 2.9E-20 137.0 7.7 125 136-275 7-212 (257)
146 cd03260 ABC_PstB_phosphate_tra 99.6 1.4E-15 3.1E-20 134.1 7.6 126 137-275 3-200 (227)
147 cd03298 ABC_ThiQ_thiamine_tran 99.6 2.9E-15 6.2E-20 130.7 9.4 114 138-275 4-189 (211)
148 TIGR03005 ectoine_ehuA ectoine 99.6 2.1E-15 4.6E-20 135.2 8.8 124 137-275 3-207 (252)
149 PRK13648 cbiO cobalt transport 99.6 1.8E-15 4E-20 137.2 8.3 120 137-276 10-204 (269)
150 cd03254 ABCC_Glucan_exporter_l 99.6 1.8E-15 4E-20 133.4 8.1 118 137-275 5-198 (229)
151 cd03300 ABC_PotA_N PotA is an 99.6 3E-15 6.5E-20 132.8 9.4 117 137-275 3-191 (232)
152 PRK13632 cbiO cobalt transport 99.6 2.1E-15 4.6E-20 137.0 8.4 121 136-276 9-204 (271)
153 PRK10790 putative multidrug tr 99.6 1.7E-15 3.8E-20 151.3 8.5 121 135-275 341-535 (592)
154 PRK15439 autoinducer 2 ABC tra 99.6 1.6E-15 3.4E-20 149.4 8.0 121 136-275 13-200 (510)
155 PRK13637 cbiO cobalt transport 99.6 1.8E-15 4E-20 138.6 8.0 121 137-275 5-205 (287)
156 cd03245 ABCC_bacteriocin_expor 99.6 2.2E-15 4.8E-20 132.2 8.2 125 137-276 5-200 (220)
157 PRK13643 cbiO cobalt transport 99.6 2.1E-15 4.5E-20 138.4 8.2 124 137-276 4-205 (288)
158 PRK13633 cobalt transporter AT 99.6 2.4E-15 5.1E-20 137.3 8.4 121 137-276 7-206 (280)
159 cd03251 ABCC_MsbA MsbA is an e 99.6 2.3E-15 4.9E-20 133.3 8.0 118 138-275 4-197 (234)
160 PRK13548 hmuV hemin importer A 99.6 2.9E-15 6.3E-20 135.1 8.7 119 137-275 5-201 (258)
161 PRK13646 cbiO cobalt transport 99.6 1.8E-15 4E-20 138.5 7.2 123 137-275 5-206 (286)
162 PRK11176 lipid transporter ATP 99.6 2.1E-15 4.5E-20 150.2 8.1 121 135-275 342-539 (582)
163 KOG0057 Mitochondrial Fe/S clu 99.6 2.3E-15 4.9E-20 145.8 8.0 121 135-276 352-547 (591)
164 TIGR03411 urea_trans_UrtD urea 99.6 2.7E-15 5.9E-20 133.5 8.0 124 137-275 5-202 (242)
165 PRK13631 cbiO cobalt transport 99.6 2.5E-15 5.5E-20 140.0 8.1 126 136-276 23-237 (320)
166 TIGR02857 CydD thiol reductant 99.6 2.2E-15 4.7E-20 148.6 8.0 121 135-275 321-517 (529)
167 cd03244 ABCC_MRP_domain2 Domai 99.6 3.6E-15 7.7E-20 130.9 8.5 120 136-275 4-198 (221)
168 PRK13641 cbiO cobalt transport 99.6 2.6E-15 5.6E-20 137.6 7.7 124 137-276 5-206 (287)
169 PRK13657 cyclic beta-1,2-gluca 99.6 2.8E-15 6.2E-20 149.7 8.7 121 135-275 335-530 (588)
170 PRK11174 cysteine/glutathione 99.6 2.3E-15 4.9E-20 150.3 7.9 120 135-275 350-544 (588)
171 cd03252 ABCC_Hemolysin The ABC 99.6 3.5E-15 7.7E-20 132.4 8.2 123 137-275 3-197 (237)
172 PRK11607 potG putrescine trans 99.6 3E-15 6.5E-20 142.4 8.0 118 136-275 21-210 (377)
173 TIGR00968 3a0106s01 sulfate AB 99.6 4.4E-15 9.5E-20 132.2 8.6 117 137-275 3-191 (237)
174 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.6 3.5E-15 7.6E-20 132.5 7.9 123 138-276 4-199 (238)
175 PRK13634 cbiO cobalt transport 99.6 3E-15 6.4E-20 137.5 7.6 124 137-276 5-207 (290)
176 PRK13642 cbiO cobalt transport 99.6 3.4E-15 7.3E-20 136.1 7.9 120 137-276 7-202 (277)
177 PRK10762 D-ribose transporter 99.6 3E-15 6.6E-20 146.9 8.0 121 137-276 7-202 (501)
178 TIGR03375 type_I_sec_LssB type 99.6 2.8E-15 6.1E-20 152.5 8.0 122 135-276 464-661 (694)
179 cd03369 ABCC_NFT1 Domain 2 of 99.6 5.3E-15 1.2E-19 128.8 8.6 120 136-275 8-184 (207)
180 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 3E-15 6.4E-20 152.1 8.1 120 135-275 452-645 (686)
181 PRK14247 phosphate ABC transpo 99.6 6.1E-15 1.3E-19 132.0 9.0 129 137-275 6-205 (250)
182 PRK13651 cobalt transporter AT 99.6 4.3E-15 9.2E-20 137.6 8.2 124 137-275 5-225 (305)
183 PRK15056 manganese/iron transp 99.6 5.2E-15 1.1E-19 134.5 8.7 126 135-275 7-202 (272)
184 PRK13645 cbiO cobalt transport 99.6 5.4E-15 1.2E-19 135.5 8.7 125 136-275 8-211 (289)
185 TIGR01277 thiQ thiamine ABC tr 99.6 7.2E-15 1.6E-19 128.6 9.1 114 138-275 4-189 (213)
186 PRK13636 cbiO cobalt transport 99.6 4.3E-15 9.3E-20 135.9 8.0 121 137-275 8-202 (283)
187 cd03253 ABCC_ATM1_transporter 99.6 4.6E-15 1E-19 131.5 7.9 123 137-275 3-196 (236)
188 COG4559 ABC-type hemin transpo 99.6 4.2E-15 9.2E-20 129.6 7.4 124 138-276 5-202 (259)
189 PRK15112 antimicrobial peptide 99.6 5.6E-15 1.2E-19 133.9 8.5 119 137-275 7-210 (267)
190 PRK13649 cbiO cobalt transport 99.6 4.7E-15 1E-19 135.1 8.0 123 137-275 5-205 (280)
191 TIGR02982 heterocyst_DevA ABC 99.6 4.9E-15 1.1E-19 130.3 7.7 122 138-276 5-203 (220)
192 PRK13639 cbiO cobalt transport 99.6 4.8E-15 1E-19 135.0 7.9 122 137-276 4-198 (275)
193 PRK10982 galactose/methyl gala 99.6 4.8E-15 1.1E-19 145.1 8.4 122 139-275 3-194 (491)
194 TIGR01193 bacteriocin_ABC ABC- 99.6 3.9E-15 8.4E-20 151.8 8.0 121 135-275 474-669 (708)
195 TIGR02769 nickel_nikE nickel i 99.6 5.6E-15 1.2E-19 133.7 8.2 122 137-275 5-211 (265)
196 cd03297 ABC_ModC_molybdenum_tr 99.6 8.3E-15 1.8E-19 128.2 8.8 118 139-275 5-192 (214)
197 cd03223 ABCD_peroxisomal_ALDP 99.6 1.4E-14 3E-19 122.6 9.7 122 138-275 4-148 (166)
198 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 4.3E-15 9.4E-20 151.4 8.0 120 135-275 478-672 (710)
199 PRK11701 phnK phosphonate C-P 99.6 6.8E-15 1.5E-19 132.5 8.2 60 137-208 9-69 (258)
200 PRK13541 cytochrome c biogenes 99.6 9.5E-15 2.1E-19 126.3 8.8 123 138-276 5-184 (195)
201 cd03248 ABCC_TAP TAP, the Tran 99.6 7.4E-15 1.6E-19 129.4 8.2 125 136-275 13-209 (226)
202 TIGR00972 3a0107s01c2 phosphat 99.6 8.8E-15 1.9E-19 130.9 8.7 121 137-275 4-203 (247)
203 COG1132 MdlB ABC-type multidru 99.6 4.8E-15 1E-19 147.4 7.8 121 135-275 329-524 (567)
204 PRK11022 dppD dipeptide transp 99.6 4.1E-15 8.8E-20 138.9 6.8 128 137-276 6-215 (326)
205 PRK09580 sufC cysteine desulfu 99.6 9.9E-15 2.1E-19 130.3 8.9 126 137-275 4-205 (248)
206 PRK10771 thiQ thiamine transpo 99.6 1.2E-14 2.7E-19 128.7 9.5 115 137-275 4-190 (232)
207 CHL00131 ycf16 sulfate ABC tra 99.6 1.4E-14 3.1E-19 129.7 9.9 126 137-275 10-211 (252)
208 PRK09700 D-allose transporter 99.6 5.4E-15 1.2E-19 145.4 7.8 124 137-275 8-205 (510)
209 PRK13549 xylose transporter AT 99.6 5.8E-15 1.3E-19 145.1 7.9 120 137-275 8-203 (506)
210 PRK11288 araG L-arabinose tran 99.6 5.7E-15 1.2E-19 145.0 7.8 120 137-275 7-200 (501)
211 TIGR02203 MsbA_lipidA lipid A 99.6 5.2E-15 1.1E-19 146.9 7.6 121 135-275 331-528 (571)
212 PRK14242 phosphate transporter 99.6 9.4E-15 2E-19 131.0 8.5 124 137-275 9-208 (253)
213 PRK10938 putative molybdenum t 99.6 6E-15 1.3E-19 144.3 7.9 123 137-275 6-195 (490)
214 PRK14267 phosphate ABC transpo 99.6 1E-14 2.2E-19 130.8 8.7 62 137-210 7-74 (253)
215 cd03267 ABC_NatA_like Similar 99.6 9.9E-15 2.1E-19 130.0 8.6 111 144-275 31-214 (236)
216 PRK11300 livG leucine/isoleuci 99.6 7E-15 1.5E-19 131.9 7.6 62 137-210 8-70 (255)
217 PRK11308 dppF dipeptide transp 99.6 5.6E-15 1.2E-19 138.1 7.2 112 148-276 29-216 (327)
218 COG4525 TauB ABC-type taurine 99.6 1.2E-14 2.5E-19 125.6 8.5 115 137-276 6-194 (259)
219 PRK15079 oligopeptide ABC tran 99.6 4.4E-15 9.5E-20 139.0 6.5 112 148-276 35-223 (331)
220 TIGR02323 CP_lyasePhnK phospho 99.6 1E-14 2.2E-19 130.8 8.5 60 137-208 6-66 (253)
221 cd03233 ABC_PDR_domain1 The pl 99.6 1.4E-14 3E-19 126.2 9.0 116 137-273 6-177 (202)
222 PRK14269 phosphate ABC transpo 99.6 9.5E-15 2.1E-19 130.7 8.2 122 137-275 5-201 (246)
223 PRK09544 znuC high-affinity zi 99.6 9.9E-15 2.2E-19 131.4 8.3 124 137-275 7-181 (251)
224 PRK14259 phosphate ABC transpo 99.6 9.1E-15 2E-19 132.8 8.1 129 136-275 15-213 (269)
225 PRK13640 cbiO cobalt transport 99.5 7.9E-15 1.7E-19 134.1 7.6 120 137-276 8-205 (282)
226 PRK14248 phosphate ABC transpo 99.5 1.5E-14 3.2E-19 131.1 8.6 127 136-275 23-223 (268)
227 PRK11160 cysteine/glutathione 99.5 1.1E-14 2.5E-19 145.2 8.6 122 135-276 339-535 (574)
228 PRK10070 glycine betaine trans 99.5 9.1E-15 2E-19 140.0 7.3 111 149-275 43-225 (400)
229 TIGR01192 chvA glucan exporter 99.5 1.4E-14 3.1E-19 144.9 8.9 121 135-275 335-530 (585)
230 TIGR02142 modC_ABC molybdenum 99.5 2E-14 4.4E-19 135.6 9.4 118 140-275 5-192 (354)
231 cd03234 ABCG_White The White s 99.5 2.8E-14 6E-19 126.0 9.6 114 147-275 20-203 (226)
232 TIGR02324 CP_lyasePhnL phospho 99.5 1.8E-14 3.9E-19 126.8 8.3 123 137-275 4-209 (224)
233 PRK09984 phosphonate/organopho 99.5 1.5E-14 3.3E-19 130.5 7.9 61 137-209 7-71 (262)
234 TIGR00958 3a01208 Conjugate Tr 99.5 8.5E-15 1.8E-19 149.5 7.1 120 135-275 479-674 (711)
235 PRK10418 nikD nickel transport 99.5 2.7E-14 5.8E-19 128.4 9.3 123 137-275 7-201 (254)
236 PRK15093 antimicrobial peptide 99.5 1.1E-14 2.3E-19 136.3 6.9 127 137-275 6-219 (330)
237 TIGR01842 type_I_sec_PrtD type 99.5 1.8E-14 4E-19 142.7 9.0 121 135-275 317-514 (544)
238 PRK14239 phosphate transporter 99.5 2.5E-14 5.3E-19 128.1 8.9 124 136-275 7-207 (252)
239 cd03299 ABC_ModC_like Archeal 99.5 2.4E-14 5.2E-19 127.3 8.8 115 138-275 4-190 (235)
240 TIGR03415 ABC_choXWV_ATP choli 99.5 1.2E-14 2.6E-19 138.5 7.2 115 146-276 36-226 (382)
241 cd03250 ABCC_MRP_domain1 Domai 99.5 3.3E-14 7.2E-19 123.5 9.5 123 137-275 3-188 (204)
242 PRK10789 putative multidrug tr 99.5 1.6E-14 3.5E-19 143.9 8.5 121 135-275 314-510 (569)
243 PRK14273 phosphate ABC transpo 99.5 2.4E-14 5.1E-19 128.6 8.8 121 137-275 10-209 (254)
244 TIGR02204 MsbA_rel ABC transpo 99.5 1.3E-14 2.8E-19 144.3 7.8 121 135-275 338-535 (576)
245 PRK10744 pstB phosphate transp 99.5 2.2E-14 4.8E-19 129.4 8.6 127 136-275 15-215 (260)
246 TIGR01846 type_I_sec_HlyB type 99.5 1.5E-14 3.2E-19 147.3 8.2 122 135-276 456-653 (694)
247 PRK14256 phosphate ABC transpo 99.5 2.7E-14 5.8E-19 128.1 8.9 123 137-275 7-207 (252)
248 PRK09473 oppD oligopeptide tra 99.5 1E-14 2.2E-19 136.5 6.3 124 137-276 15-223 (330)
249 PRK14241 phosphate transporter 99.5 2.2E-14 4.9E-19 129.1 8.4 130 136-275 6-207 (258)
250 cd03290 ABCC_SUR1_N The SUR do 99.5 4.3E-14 9.3E-19 124.0 9.9 61 138-210 4-66 (218)
251 KOG0058 Peptide exporter, ABC 99.5 1.1E-14 2.4E-19 145.1 6.7 121 135-275 466-663 (716)
252 COG4555 NatA ABC-type Na+ tran 99.5 1.2E-14 2.7E-19 125.8 6.2 115 140-275 7-193 (245)
253 PRK14254 phosphate ABC transpo 99.5 2.6E-14 5.6E-19 131.0 8.6 125 137-275 42-239 (285)
254 PRK00093 GTP-binding protein D 99.5 5.9E-13 1.3E-17 128.3 18.4 107 71-183 75-197 (435)
255 TIGR01184 ntrCD nitrate transp 99.5 2.4E-14 5.3E-19 127.0 8.1 109 152-275 3-175 (230)
256 PRK11144 modC molybdate transp 99.5 2.5E-14 5.5E-19 134.9 8.7 118 140-275 6-189 (352)
257 PRK10419 nikE nickel transport 99.5 1.8E-14 3.9E-19 130.8 7.3 122 137-275 6-212 (268)
258 PRK14271 phosphate ABC transpo 99.5 2.4E-14 5.1E-19 130.6 8.0 130 136-275 23-222 (276)
259 COG1137 YhbG ABC-type (unclass 99.5 1.8E-15 3.9E-20 130.8 0.4 119 138-275 8-199 (243)
260 cd03288 ABCC_SUR2 The SUR doma 99.5 2.5E-14 5.4E-19 128.9 7.7 127 135-276 20-216 (257)
261 PRK13547 hmuV hemin importer A 99.5 2.7E-14 5.9E-19 130.1 8.0 124 137-275 4-215 (272)
262 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.5 6E-15 1.3E-19 130.4 3.4 122 139-275 27-202 (224)
263 PLN03130 ABC transporter C fam 99.5 2.3E-14 5E-19 157.1 8.6 122 135-276 1238-1434(1622)
264 TIGR02633 xylG D-xylose ABC tr 99.5 2.6E-14 5.7E-19 140.1 8.2 124 137-275 4-201 (500)
265 KOG2485 Conserved ATP/GTP bind 99.5 6.3E-14 1.4E-18 128.0 10.0 149 73-250 43-213 (335)
266 cd03289 ABCC_CFTR2 The CFTR su 99.5 2.6E-14 5.7E-19 130.6 7.6 120 136-276 4-198 (275)
267 PRK14240 phosphate transporter 99.5 4.8E-14 1E-18 126.2 9.1 123 137-275 6-205 (250)
268 PRK14272 phosphate ABC transpo 99.5 4.8E-14 1E-18 126.3 9.1 61 137-209 7-73 (252)
269 PRK14235 phosphate transporter 99.5 2.8E-14 6.1E-19 129.4 7.7 126 135-275 20-222 (267)
270 PLN03232 ABC transporter C fam 99.5 2.3E-14 5.1E-19 156.3 8.4 122 135-276 1235-1431(1495)
271 TIGR03594 GTPase_EngA ribosome 99.5 6.6E-13 1.4E-17 127.6 17.5 107 71-183 73-196 (429)
272 PRK14268 phosphate ABC transpo 99.5 3.6E-14 7.8E-19 127.9 8.0 126 137-275 15-213 (258)
273 PRK14251 phosphate ABC transpo 99.5 4E-14 8.7E-19 126.8 8.3 124 137-275 7-206 (251)
274 PRK14270 phosphate ABC transpo 99.5 4.5E-14 9.7E-19 126.6 8.6 121 137-275 7-206 (251)
275 PRK14238 phosphate transporter 99.5 3.9E-14 8.4E-19 128.8 8.1 130 136-275 26-226 (271)
276 TIGR01194 cyc_pep_trnsptr cycl 99.5 2.8E-14 6E-19 141.9 7.7 121 135-275 338-531 (555)
277 PRK14249 phosphate ABC transpo 99.5 6E-14 1.3E-18 125.8 9.1 61 137-209 7-73 (251)
278 PRK14262 phosphate ABC transpo 99.5 4.6E-14 1E-18 126.3 8.4 121 137-275 6-205 (250)
279 PRK14243 phosphate transporter 99.5 4.5E-14 9.8E-19 127.8 8.4 129 137-275 13-210 (264)
280 PRK10522 multidrug transporter 99.5 4.2E-14 9.2E-19 140.3 8.8 121 135-275 323-510 (547)
281 COG0444 DppD ABC-type dipeptid 99.5 3.4E-14 7.3E-19 130.7 7.4 127 138-275 5-214 (316)
282 PRK14237 phosphate transporter 99.5 4.7E-14 1E-18 127.9 8.3 127 136-275 22-222 (267)
283 PRK14263 phosphate ABC transpo 99.5 4.9E-14 1.1E-18 127.5 8.4 122 137-276 11-209 (261)
284 PRK14246 phosphate ABC transpo 99.5 5.7E-14 1.2E-18 126.8 8.6 60 135-206 11-71 (257)
285 COG1118 CysA ABC-type sulfate/ 99.5 2.8E-14 6E-19 130.3 6.5 114 143-275 11-198 (345)
286 PRK14261 phosphate ABC transpo 99.5 6E-14 1.3E-18 125.9 8.7 123 137-275 9-208 (253)
287 PRK14253 phosphate ABC transpo 99.5 4.7E-14 1E-18 126.2 7.9 129 137-275 6-204 (249)
288 PRK14255 phosphate ABC transpo 99.5 7.2E-14 1.6E-18 125.2 9.1 126 137-275 8-207 (252)
289 COG0396 sufC Cysteine desulfur 99.5 7.3E-14 1.6E-18 123.1 8.6 121 137-274 6-203 (251)
290 COG4181 Predicted ABC-type tra 99.5 4E-14 8.6E-19 120.1 6.6 111 149-275 25-207 (228)
291 PRK14274 phosphate ABC transpo 99.5 4.7E-14 1E-18 127.1 7.5 125 136-275 14-214 (259)
292 COG4604 CeuD ABC-type enteroch 99.5 3.8E-14 8.3E-19 122.5 6.4 124 138-276 5-197 (252)
293 PRK14275 phosphate ABC transpo 99.5 6E-14 1.3E-18 128.6 7.9 124 137-275 42-241 (286)
294 TIGR00957 MRP_assoc_pro multi 99.5 4.7E-14 1E-18 154.2 8.1 122 135-276 1285-1481(1522)
295 PTZ00243 ABC transporter; Prov 99.5 5.1E-14 1.1E-18 154.0 8.3 122 135-276 1309-1506(1560)
296 COG4175 ProV ABC-type proline/ 99.5 1.8E-14 3.8E-19 132.1 3.8 112 149-276 43-226 (386)
297 PRK14244 phosphate ABC transpo 99.5 1E-13 2.2E-18 124.3 8.6 65 138-209 9-74 (251)
298 PRK14266 phosphate ABC transpo 99.5 7.7E-14 1.7E-18 124.9 7.7 124 137-275 6-205 (250)
299 cd03236 ABC_RNaseL_inhibitor_d 99.5 1.1E-13 2.4E-18 125.1 8.7 117 140-275 6-199 (255)
300 PRK14236 phosphate transporter 99.5 1E-13 2.2E-18 126.0 8.4 123 135-275 26-227 (272)
301 PRK10261 glutathione transport 99.5 5.6E-14 1.2E-18 141.6 7.3 112 148-276 338-525 (623)
302 TIGR02770 nickel_nikD nickel i 99.5 9.4E-14 2E-18 123.0 7.8 111 150-275 2-186 (230)
303 PRK14245 phosphate ABC transpo 99.5 9.1E-14 2E-18 124.5 7.8 124 137-275 6-205 (250)
304 KOG0055 Multidrug/pheromone ex 99.5 4.8E-14 1E-18 147.4 6.8 123 134-276 350-549 (1228)
305 PTZ00265 multidrug resistance 99.5 5E-14 1.1E-18 153.2 6.9 133 135-275 1166-1419(1466)
306 PRK14260 phosphate ABC transpo 99.5 1.2E-13 2.6E-18 124.6 8.2 124 135-276 8-210 (259)
307 PRK14252 phosphate ABC transpo 99.5 1.3E-13 2.8E-18 124.8 8.4 65 136-209 18-85 (265)
308 PRK14258 phosphate ABC transpo 99.5 1.7E-13 3.6E-18 123.8 8.9 63 135-209 8-76 (261)
309 PRK14265 phosphate ABC transpo 99.5 1.4E-13 3E-18 125.4 8.3 126 137-275 23-220 (274)
310 TIGR02633 xylG D-xylose ABC tr 99.5 7E-14 1.5E-18 137.2 6.2 114 148-276 274-464 (500)
311 PRK14257 phosphate ABC transpo 99.5 1.8E-13 4E-18 128.0 8.5 129 135-276 81-285 (329)
312 PRK03003 GTP-binding protein D 99.4 2.8E-12 6.1E-17 125.3 16.9 106 72-183 113-235 (472)
313 PRK15134 microcin C ABC transp 99.4 1.4E-13 3.1E-18 136.0 7.9 124 137-276 8-218 (529)
314 COG1123 ATPase components of v 99.4 2E-13 4.2E-18 133.7 8.3 111 148-276 305-491 (539)
315 TIGR03771 anch_rpt_ABC anchore 99.4 4.1E-13 8.8E-18 118.6 9.3 103 158-275 5-173 (223)
316 PRK13549 xylose transporter AT 99.4 1.3E-13 2.8E-18 135.6 6.5 114 148-276 276-466 (506)
317 COG1123 ATPase components of v 99.4 1.9E-13 4.2E-18 133.8 7.5 126 138-275 9-215 (539)
318 PRK10938 putative molybdenum t 99.4 1.6E-13 3.5E-18 134.3 7.0 122 140-276 266-463 (490)
319 TIGR03269 met_CoM_red_A2 methy 99.4 2.9E-13 6.3E-18 133.5 8.5 59 137-205 3-62 (520)
320 PRK09700 D-allose transporter 99.4 1.7E-13 3.8E-18 134.8 6.6 112 149-275 278-469 (510)
321 TIGR01271 CFTR_protein cystic 99.4 2.9E-13 6.2E-18 147.8 8.4 121 135-276 1218-1413(1490)
322 PRK15134 microcin C ABC transp 99.4 3.9E-13 8.4E-18 132.9 8.5 111 148-276 300-487 (529)
323 cd03237 ABC_RNaseL_inhibitor_d 99.4 7.8E-13 1.7E-17 118.9 9.7 103 158-275 24-176 (246)
324 TIGR01257 rim_protein retinal- 99.4 2.9E-13 6.2E-18 149.7 8.2 119 137-276 1940-2131(2272)
325 PRK03695 vitamin B12-transport 99.4 3.5E-13 7.6E-18 120.9 7.4 111 149-275 11-193 (248)
326 COG4619 ABC-type uncharacteriz 99.4 1.1E-13 2.3E-18 117.1 3.5 110 146-275 15-194 (223)
327 PRK10762 D-ribose transporter 99.4 4E-13 8.7E-18 132.0 8.0 113 149-276 267-456 (501)
328 PRK14264 phosphate ABC transpo 99.4 5.2E-13 1.1E-17 123.5 8.2 66 137-209 48-114 (305)
329 PRK10636 putative ABC transpor 99.4 5.7E-13 1.2E-17 134.7 8.9 119 140-275 318-487 (638)
330 PRK10982 galactose/methyl gala 99.4 2.6E-13 5.6E-18 132.9 6.1 114 148-276 262-452 (491)
331 PLN03211 ABC transporter G-25; 99.4 4.9E-13 1.1E-17 135.6 8.2 121 141-276 75-267 (659)
332 PRK11288 araG L-arabinose tran 99.4 2.6E-13 5.7E-18 133.3 6.1 113 149-276 268-457 (501)
333 COG4608 AppF ABC-type oligopep 99.4 1.6E-13 3.6E-18 123.6 4.2 114 148-276 27-171 (268)
334 PRK10535 macrolide transporter 99.4 6.1E-13 1.3E-17 134.7 8.5 123 137-275 7-204 (648)
335 PRK15064 ABC transporter ATP-b 99.4 7.7E-13 1.7E-17 130.8 8.8 121 139-275 324-495 (530)
336 COG4586 ABC-type uncharacteriz 99.4 2.6E-13 5.7E-18 122.2 4.9 113 148-276 38-218 (325)
337 KOG0056 Heavy metal exporter H 99.4 2.4E-13 5.2E-18 130.6 4.9 121 135-275 538-733 (790)
338 COG4598 HisP ABC-type histidin 99.4 2.5E-13 5.5E-18 116.1 4.5 124 137-275 9-212 (256)
339 PRK15439 autoinducer 2 ABC tra 99.4 3.7E-13 8.1E-18 132.6 6.4 113 149-276 278-464 (510)
340 PRK09518 bifunctional cytidyla 99.4 1.3E-11 2.9E-16 126.2 17.7 106 72-183 350-474 (712)
341 TIGR03269 met_CoM_red_A2 methy 99.4 6E-13 1.3E-17 131.2 7.5 56 138-205 283-344 (520)
342 COG1119 ModF ABC-type molybden 99.4 4.1E-13 8.9E-18 119.4 5.6 121 136-275 33-233 (257)
343 PRK10261 glutathione transport 99.4 4.5E-13 9.8E-18 135.1 6.4 125 137-276 15-230 (623)
344 PRK13409 putative ATPase RIL; 99.4 5E-13 1.1E-17 133.9 6.7 120 140-276 79-272 (590)
345 PRK13546 teichoic acids export 99.4 1.1E-12 2.4E-17 119.1 8.3 111 149-275 39-203 (264)
346 PRK11147 ABC transporter ATPas 99.4 1.1E-12 2.4E-17 132.5 8.8 120 139-275 324-497 (635)
347 PRK13545 tagH teichoic acids e 99.4 1.9E-13 4.1E-18 134.2 3.1 123 137-275 24-203 (549)
348 TIGR01257 rim_protein retinal- 99.4 7.9E-13 1.7E-17 146.2 8.1 118 137-276 931-1121(2272)
349 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 1.4E-12 3E-17 129.7 9.1 121 139-275 327-500 (552)
350 PRK11819 putative ABC transpor 99.4 1.4E-12 3.1E-17 129.8 8.8 121 139-275 329-502 (556)
351 COG4148 ModC ABC-type molybdat 99.4 9.4E-13 2E-17 119.1 6.7 104 156-275 20-189 (352)
352 cd03238 ABC_UvrA The excision 99.4 9.6E-13 2.1E-17 112.8 6.4 109 148-275 9-149 (176)
353 PRK15064 ABC transporter ATP-b 99.3 3.5E-13 7.7E-18 133.2 3.3 58 137-206 4-62 (530)
354 TIGR01187 potA spermidine/putr 99.3 1.6E-12 3.6E-17 121.3 7.4 90 164-275 1-161 (325)
355 COG0488 Uup ATPase components 99.3 5.1E-13 1.1E-17 131.9 4.2 58 137-206 6-64 (530)
356 COG4133 CcmA ABC-type transpor 99.3 9.1E-13 2E-17 113.0 4.9 115 145-274 13-189 (209)
357 PRK11147 ABC transporter ATPas 99.3 4E-13 8.7E-18 135.7 3.2 59 137-207 6-65 (635)
358 PRK11819 putative ABC transpor 99.3 4.7E-13 1E-17 133.2 3.5 58 136-205 8-67 (556)
359 KOG0055 Multidrug/pheromone ex 99.3 1.2E-12 2.6E-17 137.2 6.4 122 134-275 987-1185(1228)
360 PRK10636 putative ABC transpor 99.3 8.5E-13 1.9E-17 133.4 5.2 59 137-207 4-63 (638)
361 PRK13409 putative ATPase RIL; 99.3 3.2E-12 6.8E-17 128.2 8.9 110 150-275 355-514 (590)
362 PRK15177 Vi polysaccharide exp 99.3 4.5E-13 9.8E-18 117.7 2.5 110 150-275 3-163 (213)
363 PTZ00265 multidrug resistance 99.3 1.8E-12 3.8E-17 141.2 7.2 65 134-210 382-451 (1466)
364 COG1134 TagH ABC-type polysacc 99.3 8.5E-13 1.8E-17 117.3 3.9 116 146-276 39-208 (249)
365 KOG0054 Multidrug resistance-a 99.3 2.5E-12 5.4E-17 137.1 7.9 122 135-276 1139-1335(1381)
366 cd03291 ABCC_CFTR1 The CFTR su 99.3 6.1E-12 1.3E-16 115.4 9.5 49 146-206 49-98 (282)
367 COG4618 ArpD ABC-type protease 99.3 2.5E-12 5.4E-17 124.1 7.0 109 147-275 349-532 (580)
368 COG4107 PhnK ABC-type phosphon 99.3 2.6E-12 5.6E-17 109.5 6.2 121 139-275 11-212 (258)
369 COG1101 PhnK ABC-type uncharac 99.3 1.3E-12 2.9E-17 114.3 4.1 115 146-275 18-209 (263)
370 COG4674 Uncharacterized ABC-ty 99.3 1.2E-12 2.7E-17 113.1 3.5 125 137-276 8-207 (249)
371 TIGR03719 ABC_ABC_ChvD ATP-bin 99.3 3.2E-12 7E-17 127.1 7.0 58 137-206 7-66 (552)
372 COG0488 Uup ATPase components 99.3 5.2E-12 1.1E-16 124.7 8.2 112 148-275 336-496 (530)
373 PLN03073 ABC transporter F fam 99.3 7.4E-12 1.6E-16 128.0 9.1 121 139-275 513-684 (718)
374 COG4136 ABC-type uncharacteriz 99.3 5E-12 1.1E-16 105.4 6.3 108 149-275 17-195 (213)
375 TIGR00956 3a01205 Pleiotropic 99.3 8.6E-12 1.9E-16 135.5 8.9 128 137-276 762-963 (1394)
376 COG4172 ABC-type uncharacteriz 99.2 1.1E-11 2.4E-16 117.0 6.5 110 149-276 302-488 (534)
377 TIGR00955 3a01204 The Eye Pigm 99.2 1.7E-11 3.7E-16 123.5 7.3 115 146-275 37-226 (617)
378 COG4138 BtuD ABC-type cobalami 99.2 1.3E-11 2.9E-16 105.2 4.7 103 158-276 24-193 (248)
379 TIGR00954 3a01203 Peroxysomal 99.2 5.4E-11 1.2E-15 120.8 9.2 59 135-205 452-512 (659)
380 PLN03140 ABC transporter G fam 99.2 4.4E-11 9.6E-16 130.2 8.4 116 148-276 894-1080(1470)
381 COG4167 SapF ABC-type antimicr 99.2 7E-11 1.5E-15 101.5 7.1 85 149-250 28-122 (267)
382 KOG0061 Transporter, ABC super 99.2 6.8E-11 1.5E-15 119.1 8.2 109 147-275 43-230 (613)
383 COG4161 ArtP ABC-type arginine 99.2 2.3E-11 5E-16 102.6 4.0 122 138-275 6-201 (242)
384 KOG0059 Lipid exporter ABCA1 a 99.2 3.9E-11 8.5E-16 125.4 6.5 119 139-276 569-759 (885)
385 PLN03073 ABC transporter F fam 99.1 1.6E-11 3.4E-16 125.6 2.8 63 136-207 179-242 (718)
386 cd03278 ABC_SMC_barmotin Barmo 99.1 1.1E-10 2.5E-15 101.5 7.6 39 234-275 137-176 (197)
387 COG5265 ATM1 ABC-type transpor 99.1 5.4E-11 1.2E-15 112.8 4.9 120 136-275 264-458 (497)
388 COG4615 PvdE ABC-type sideroph 99.1 4E-11 8.7E-16 113.0 3.7 67 133-211 321-389 (546)
389 TIGR00956 3a01205 Pleiotropic 99.1 1.7E-10 3.6E-15 125.6 8.5 54 148-209 75-129 (1394)
390 COG1159 Era GTPase [General fu 99.1 5.6E-10 1.2E-14 101.9 8.6 84 160-271 7-92 (298)
391 TIGR00957 MRP_assoc_pro multi 99.0 4.4E-10 9.6E-15 123.3 9.1 60 135-206 637-699 (1522)
392 PF01926 MMR_HSR1: 50S ribosom 99.0 1.1E-09 2.3E-14 86.5 8.6 78 161-267 1-81 (116)
393 TIGR01271 CFTR_protein cystic 99.0 5.1E-10 1.1E-14 122.6 9.0 114 147-276 439-609 (1490)
394 COG4172 ABC-type uncharacteriz 99.0 4.8E-10 1E-14 106.1 7.5 119 147-276 23-219 (534)
395 KOG0066 eIF2-interacting prote 99.0 4.3E-10 9.4E-15 107.3 7.2 100 159-275 613-761 (807)
396 COG0218 Predicted GTPase [Gene 99.0 1.8E-09 3.8E-14 93.7 9.3 79 159-265 24-102 (200)
397 PLN03232 ABC transporter C fam 99.0 8.9E-10 1.9E-14 120.8 8.7 56 135-202 615-674 (1495)
398 PF00005 ABC_tran: ABC transpo 99.0 1.1E-10 2.4E-15 94.5 1.2 63 153-232 4-67 (137)
399 PLN03130 ABC transporter C fam 99.0 1.2E-09 2.5E-14 120.5 8.3 59 135-205 615-678 (1622)
400 cd04466 S1_YloQ_GTPase S1_YloQ 99.0 2E-09 4.3E-14 77.6 6.5 67 1-71 1-68 (68)
401 PLN03140 ABC transporter G fam 98.9 2.1E-09 4.6E-14 117.3 9.0 51 147-209 178-232 (1470)
402 KOG0065 Pleiotropic drug resis 98.9 1.8E-09 4E-14 113.9 7.5 116 147-275 804-990 (1391)
403 COG4778 PhnL ABC-type phosphon 98.9 1.7E-09 3.7E-14 92.0 5.8 45 149-205 26-71 (235)
404 KOG0927 Predicted transporter 98.9 8.3E-10 1.8E-14 107.4 4.2 111 149-275 405-566 (614)
405 PTZ00243 ABC transporter; Prov 98.9 2.5E-09 5.3E-14 117.7 8.2 49 145-205 671-720 (1560)
406 cd03279 ABC_sbcCD SbcCD and ot 98.9 6.8E-09 1.5E-13 91.1 9.1 41 233-276 152-194 (213)
407 cd03270 ABC_UvrA_I The excisio 98.8 7.4E-09 1.6E-13 91.8 7.0 39 234-275 159-199 (226)
408 TIGR02858 spore_III_AA stage I 98.8 7.3E-09 1.6E-13 94.6 6.5 94 160-275 112-229 (270)
409 cd01853 Toc34_like Toc34-like 98.8 3.1E-08 6.8E-13 89.4 9.8 26 158-183 30-55 (249)
410 COG0486 ThdF Predicted GTPase 98.8 2.5E-08 5.5E-13 95.9 9.2 84 158-271 216-303 (454)
411 cd03240 ABC_Rad50 The catalyti 98.8 3.2E-08 7E-13 86.5 9.1 41 232-275 139-183 (204)
412 PF02421 FeoB_N: Ferrous iron 98.8 3.3E-08 7.2E-13 83.2 8.2 56 161-246 2-60 (156)
413 KOG1191 Mitochondrial GTPase [ 98.7 3E-08 6.6E-13 95.7 8.1 81 158-267 267-350 (531)
414 cd01852 AIG1 AIG1 (avrRpt2-ind 98.7 6E-08 1.3E-12 83.7 9.2 23 161-183 2-24 (196)
415 COG1160 Predicted GTPases [Gen 98.7 2.8E-08 6.2E-13 95.3 7.7 83 160-271 4-90 (444)
416 cd03243 ABC_MutS_homologs The 98.7 1.6E-08 3.4E-13 88.0 5.4 112 158-275 28-151 (202)
417 TIGR00436 era GTP-binding prot 98.7 6.3E-08 1.4E-12 88.0 8.9 23 161-183 2-24 (270)
418 TIGR03598 GTPase_YsxC ribosome 98.7 1.3E-07 2.9E-12 80.1 10.0 60 159-246 18-77 (179)
419 cd03272 ABC_SMC3_euk Eukaryoti 98.7 3.5E-08 7.6E-13 87.7 6.3 39 233-274 181-220 (243)
420 cd03283 ABC_MutS-like MutS-lik 98.7 4.2E-08 9E-13 85.6 6.4 41 232-275 105-148 (199)
421 COG2401 ABC-type ATPase fused 98.7 1.6E-08 3.5E-13 96.2 3.6 121 148-275 397-568 (593)
422 cd03274 ABC_SMC4_euk Eukaryoti 98.6 4.6E-08 1E-12 86.1 5.9 40 233-275 150-190 (212)
423 PRK00454 engB GTP-binding prot 98.6 2.3E-07 5E-12 79.0 9.8 59 159-245 24-82 (196)
424 cd03280 ABC_MutS2 MutS2 homolo 98.6 3.2E-08 6.8E-13 86.0 4.1 40 232-274 108-150 (200)
425 PRK00089 era GTPase Era; Revie 98.6 2.7E-07 5.9E-12 84.4 10.0 24 160-183 6-29 (292)
426 cd04451 S1_IF1 S1_IF1: Transla 98.6 1.9E-07 4.2E-12 66.8 6.5 59 1-60 3-62 (64)
427 KOG2355 Predicted ABC-type tra 98.6 1.4E-07 3E-12 82.7 6.6 38 236-276 169-209 (291)
428 cd01876 YihA_EngB The YihA (En 98.6 2.7E-07 5.9E-12 75.2 8.1 57 162-246 2-58 (170)
429 cd04104 p47_IIGP_like p47 (47- 98.5 3.8E-07 8.2E-12 79.0 8.7 61 161-246 3-65 (197)
430 cd03271 ABC_UvrA_II The excisi 98.5 5.2E-08 1.1E-12 88.5 3.2 39 234-275 192-232 (261)
431 KOG1423 Ras-like GTPase ERA [C 98.5 3.8E-07 8.1E-12 83.9 8.4 60 160-248 73-135 (379)
432 cd04164 trmE TrmE (MnmE, ThdF, 98.5 1E-06 2.2E-11 71.4 10.1 25 159-183 1-25 (157)
433 KOG0062 ATPase component of AB 98.5 4.9E-08 1.1E-12 94.8 2.5 46 138-183 84-130 (582)
434 PRK00276 infA translation init 98.5 3.5E-07 7.6E-12 67.2 6.5 59 1-60 9-68 (72)
435 cd03273 ABC_SMC2_euk Eukaryoti 98.5 6.1E-07 1.3E-11 80.6 9.3 39 234-275 190-229 (251)
436 PF04548 AIG1: AIG1 family; I 98.5 2.9E-07 6.4E-12 80.8 6.9 23 161-183 2-24 (212)
437 COG4170 SapD ABC-type antimicr 98.5 1.4E-07 3.1E-12 82.9 4.6 115 149-275 22-219 (330)
438 KOG0054 Multidrug resistance-a 98.5 3.5E-07 7.6E-12 98.4 7.9 47 149-207 536-583 (1381)
439 cd03275 ABC_SMC1_euk Eukaryoti 98.4 9.4E-07 2E-11 79.3 9.3 40 233-275 178-219 (247)
440 COG1245 Predicted ATPase, RNas 98.4 6.5E-07 1.4E-11 86.2 8.5 37 236-275 477-516 (591)
441 CHL00010 infA translation init 98.4 5.9E-07 1.3E-11 67.0 6.5 59 1-60 9-68 (78)
442 PRK15494 era GTPase Era; Provi 98.4 7.4E-07 1.6E-11 83.8 8.3 23 161-183 54-76 (339)
443 TIGR00991 3a0901s02IAP34 GTP-b 98.4 1.2E-06 2.6E-11 81.4 9.4 25 159-183 38-62 (313)
444 TIGR00993 3a0901s04IAP86 chlor 98.4 1.7E-06 3.8E-11 87.0 10.9 74 160-261 119-194 (763)
445 cd03281 ABC_MSH5_euk MutS5 hom 98.4 6.1E-07 1.3E-11 79.0 6.9 40 233-275 109-154 (213)
446 cd03227 ABC_Class2 ABC-type Cl 98.4 8.8E-07 1.9E-11 74.5 7.6 41 232-275 99-141 (162)
447 cd03282 ABC_MSH4_euk MutS4 hom 98.4 2.1E-07 4.5E-12 81.6 3.4 120 150-275 19-151 (204)
448 COG3910 Predicted ATPase [Gene 98.4 1.1E-06 2.4E-11 76.0 7.5 38 234-274 148-187 (233)
449 cd04163 Era Era subfamily. Er 98.4 2.9E-06 6.3E-11 68.8 9.3 24 160-183 4-27 (168)
450 COG4178 ABC-type uncharacteriz 98.4 7.2E-07 1.6E-11 89.0 6.8 122 138-274 396-573 (604)
451 cd03276 ABC_SMC6_euk Eukaryoti 98.3 1.9E-06 4.1E-11 75.0 8.4 43 231-276 130-177 (198)
452 TIGR00450 mnmE_trmE_thdF tRNA 98.3 2E-06 4.3E-11 83.8 9.3 26 158-183 202-227 (442)
453 cd03284 ABC_MutS1 MutS1 homolo 98.3 2.6E-07 5.5E-12 81.6 2.8 26 156-181 27-52 (216)
454 cd01894 EngA1 EngA1 subfamily. 98.3 1.6E-06 3.4E-11 70.4 7.2 21 163-183 1-21 (157)
455 cd00820 PEPCK_HprK Phosphoenol 98.3 3.2E-07 6.9E-12 72.5 2.6 47 150-214 5-52 (107)
456 TIGR03156 GTP_HflX GTP-binding 98.3 2.5E-06 5.3E-11 80.8 9.0 24 160-183 190-213 (351)
457 PRK05291 trmE tRNA modificatio 98.3 2.5E-06 5.4E-11 83.2 9.1 80 158-267 214-296 (449)
458 PRK12298 obgE GTPase CgtA; Rev 98.3 2.6E-06 5.7E-11 81.7 9.0 55 161-245 161-219 (390)
459 TIGR03238 dnd_assoc_3 dnd syst 98.3 4.2E-07 9E-12 88.5 3.3 50 150-213 22-73 (504)
460 smart00534 MUTSac ATPase domai 98.3 1.5E-06 3.2E-11 74.7 5.9 41 232-275 78-122 (185)
461 cd03239 ABC_SMC_head The struc 98.3 4.9E-06 1.1E-10 71.3 9.1 41 232-275 116-158 (178)
462 PF00350 Dynamin_N: Dynamin fa 98.3 1.5E-06 3.3E-11 72.4 5.6 22 162-183 1-22 (168)
463 COG1129 MglA ABC-type sugar tr 98.3 2.6E-06 5.6E-11 83.5 8.0 108 149-275 274-461 (500)
464 cd01851 GBP Guanylate-binding 98.3 4.6E-06 9.9E-11 74.1 8.8 63 160-249 8-76 (224)
465 PRK04213 GTP-binding protein; 98.3 6.9E-06 1.5E-10 70.6 9.7 24 159-182 9-32 (201)
466 cd01898 Obg Obg subfamily. Th 98.2 1.8E-06 3.9E-11 71.5 5.5 23 161-183 2-24 (170)
467 cd03287 ABC_MSH3_euk MutS3 hom 98.2 2.5E-06 5.4E-11 75.8 6.5 110 152-275 23-154 (222)
468 PRK11058 GTPase HflX; Provisio 98.2 5.4E-06 1.2E-10 80.4 9.4 24 160-183 198-221 (426)
469 KOG0927 Predicted transporter 98.2 8.6E-07 1.9E-11 86.7 3.7 47 137-183 78-125 (614)
470 PTZ00258 GTP-binding protein; 98.2 5.4E-06 1.2E-10 79.4 9.1 26 158-183 20-45 (390)
471 TIGR03594 GTPase_EngA ribosome 98.2 3.6E-06 7.9E-11 80.9 8.0 23 161-183 1-23 (429)
472 cd01900 YchF YchF subfamily. 98.2 5.5E-06 1.2E-10 75.9 8.4 94 162-267 1-94 (274)
473 COG1084 Predicted GTPase [Gene 98.2 6.3E-06 1.4E-10 76.5 8.7 62 159-250 168-232 (346)
474 cd01850 CDC_Septin CDC/Septin. 98.2 5.9E-06 1.3E-10 75.7 8.6 23 161-183 6-28 (276)
475 PRK07721 fliI flagellum-specif 98.2 7.4E-06 1.6E-10 79.6 9.4 114 148-276 147-317 (438)
476 COG1245 Predicted ATPase, RNas 98.2 1.1E-06 2.4E-11 84.6 3.5 37 236-275 235-273 (591)
477 PRK09601 GTP-binding protein Y 98.2 9.7E-06 2.1E-10 76.9 9.8 96 160-267 3-98 (364)
478 cd01878 HflX HflX subfamily. 98.2 1.3E-05 2.8E-10 69.1 9.4 23 160-182 42-64 (204)
479 cd01881 Obg_like The Obg-like 98.1 2.4E-06 5.3E-11 70.9 4.4 20 164-183 1-20 (176)
480 cd01897 NOG NOG1 is a nucleola 98.1 1.2E-05 2.7E-10 66.4 8.6 23 161-183 2-24 (168)
481 PRK15467 ethanolamine utilizat 98.1 9.8E-06 2.1E-10 67.7 7.9 69 160-271 2-71 (158)
482 PF10662 PduV-EutP: Ethanolami 98.1 9.5E-06 2.1E-10 67.3 7.3 24 160-183 2-25 (143)
483 PF00735 Septin: Septin; Inte 98.1 1E-05 2.2E-10 74.4 7.8 23 161-183 6-28 (281)
484 cd01879 FeoB Ferrous iron tran 98.1 9E-06 2E-10 66.2 6.5 19 164-182 1-19 (158)
485 cd04171 SelB SelB subfamily. 98.1 7.4E-06 1.6E-10 67.0 5.9 22 161-182 2-23 (164)
486 COG0178 UvrA Excinuclease ATPa 98.1 1.3E-05 2.7E-10 81.9 8.4 38 236-276 847-886 (935)
487 cd01130 VirB11-like_ATPase Typ 98.1 5E-06 1.1E-10 71.4 4.8 46 150-207 15-61 (186)
488 PRK03003 GTP-binding protein D 98.0 1.9E-05 4.1E-10 77.5 9.3 24 160-183 39-62 (472)
489 PF05049 IIGP: Interferon-indu 98.0 1.2E-05 2.7E-10 76.4 7.5 64 159-247 35-100 (376)
490 cd01895 EngA2 EngA2 subfamily. 98.0 3.2E-05 6.9E-10 63.4 9.1 24 160-183 3-26 (174)
491 smart00053 DYNc Dynamin, GTPas 98.0 3.7E-05 8E-10 69.1 10.0 24 160-183 27-50 (240)
492 cd03277 ABC_SMC5_euk Eukaryoti 98.0 2.6E-05 5.7E-10 68.7 8.7 41 232-275 148-192 (213)
493 cd01888 eIF2_gamma eIF2-gamma 98.0 4.5E-05 9.7E-10 66.3 10.0 85 72-157 102-194 (203)
494 cd00880 Era_like Era (E. coli 98.0 2.5E-05 5.5E-10 62.2 7.7 20 164-183 1-20 (163)
495 COG3596 Predicted GTPase [Gene 98.0 1.3E-05 2.8E-10 72.9 6.4 26 158-183 38-63 (296)
496 cd03286 ABC_MSH6_euk MutS6 hom 98.0 5.1E-06 1.1E-10 73.6 3.6 119 151-275 21-153 (218)
497 TIGR02788 VirB11 P-type DNA tr 98.0 3.3E-05 7.2E-10 71.7 9.1 41 153-205 137-178 (308)
498 KOG0062 ATPase component of AB 98.0 6.2E-06 1.3E-10 80.4 4.4 101 159-275 390-539 (582)
499 PRK08472 fliI flagellum-specif 98.0 3E-06 6.5E-11 82.1 2.1 101 148-274 146-254 (434)
500 KOG1547 Septin CDC10 and relat 98.0 8.8E-06 1.9E-10 72.8 4.7 23 161-183 48-70 (336)
No 1
>COG1162 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=1.6e-51 Score=374.39 Aligned_cols=241 Identities=38% Similarity=0.612 Sum_probs=222.1
Q ss_pred CeeEEEecCCCCcee--ccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeecccccccccchhcccc
Q 023887 1 MRVIVQQSEPSRTSD--CNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78 (276)
Q Consensus 1 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~~anvD 78 (276)
|.++|.++..|-|.+ .+..+++.+.|..||+|++....++|||||.++.... .|+|++++||+|.|.||.++|+|
T Consensus 5 ~~g~v~~~~~g~y~v~~~~~~~~~~~~~~~r~~lr~~~~~~vVGD~V~~~~~~~---~g~I~~i~~Rkn~L~Rp~v~n~d 81 (301)
T COG1162 5 KRGRVVKVDAGFYGVRLEEEVDGEVYRCRARGNLRKKDLKPVVGDRVVFEDENN---NGVIEKILPRKNVLIRPPVANND 81 (301)
T ss_pred cCcEEEEeeCCEEEEEEccccccceeeeeeecceeccCccccccCeEEEecCCC---cceEEEEecccCceeCCcccccc
Confidence 467888888999965 3334567899999999999889999999999987532 28999999999999999999999
Q ss_pred EEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH--HHHHHhhhcCceeEEEecCCccchHHHHhh
Q 023887 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN--TWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156 (276)
Q Consensus 79 ~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~ 156 (276)
++++|+++..|.+++++|+|||+.|++.|+.|+||+||+||++++... ++...|.++||.++.+|..+..+++.|...
T Consensus 82 ~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~ 161 (301)
T COG1162 82 QAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAEL 161 (301)
T ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHH
Confidence 999999999999999999999999999999999999999999877655 567788899999999999999999999999
Q ss_pred ccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcE
Q 023887 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGY 236 (276)
Q Consensus 157 l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~ 236 (276)
++|++++|+|+||||||||+|+|.+.. .++++++|.+.++|||||++..+++++.+++
T Consensus 162 l~~~~svl~GqSGVGKSSLiN~L~p~~----------------------~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~ 219 (301)
T COG1162 162 LAGKITVLLGQSGVGKSTLINALLPEL----------------------NQKTGEISEKLGRGRHTTTHVELFPLPGGGW 219 (301)
T ss_pred hcCCeEEEECCCCCcHHHHHHhhCchh----------------------hhhhhhhcccCCCCCCccceEEEEEcCCCCE
Confidence 999999999999999999999999976 4889999999999999999999999998999
Q ss_pred EEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 237 LADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 237 iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
|+|||||+++++++..++++.+.|+||.+.
T Consensus 220 iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~ 249 (301)
T COG1162 220 IIDTPGFRSLGLAHLEPEDLVQAFPEFAEL 249 (301)
T ss_pred EEeCCCCCccCcccCCHHHHHHHhHHHHHH
Confidence 999999999999999999999999999985
No 2
>PRK12289 GTPase RsgA; Reviewed
Probab=100.00 E-value=8.6e-48 Score=361.07 Aligned_cols=242 Identities=50% Similarity=0.839 Sum_probs=216.6
Q ss_pred CeeEEEecCCCCc-eeccCCC-----CcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeecccccccccchh
Q 023887 1 MRVIVQQSEPSRT-SDCNDKT-----GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV 74 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~~ 74 (276)
|.+.|... .+.| .|..+.+ +..+.|..||++++.+..|+|||||.++..++.+..++|++|+||+|.|.|+.+
T Consensus 9 ~~g~V~~~-~~~~y~V~~~~~~~~~~~~~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~~~~~~~I~~vlpR~~~L~R~~~ 87 (352)
T PRK12289 9 LLGTVVAV-QANFYRVQLDEPQNLNPPSLLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLPRKTELDRPPV 87 (352)
T ss_pred ccEEEEEE-ECCEEEEEECCCcccCcceEEEEEcccccccCCCCcccCCEEEEeecCCCCCceEEEEEeccccceechhh
Confidence 56888888 5555 7754321 357999999999977777999999999876665678999999999999999999
Q ss_pred ccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccchHHHH
Q 023887 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLL 154 (276)
Q Consensus 75 anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~ 154 (276)
+|+|++++|+++.+|.+++..++|||..++..++|+++|+||+||.+++..+.|...+..+||.++.+|+.++.+++.|.
T Consensus 88 aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~ 167 (352)
T PRK12289 88 ANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALL 167 (352)
T ss_pred hcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHh
Confidence 99999999999988988988999999999999999999999999998777778888888899999999999999999999
Q ss_pred hhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCC
Q 023887 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234 (276)
Q Consensus 155 ~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~ 234 (276)
..+.+++++|+|+||||||||||.|.+.. ...+++++.+.++|||||++..++.++.+
T Consensus 168 ~~L~~ki~v~iG~SgVGKSSLIN~L~~~~----------------------~~~t~~vs~~~~rGrHTT~~~~l~~l~~g 225 (352)
T PRK12289 168 EQLRNKITVVAGPSGVGKSSLINRLIPDV----------------------ELRVGKVSGKLGRGRHTTRHVELFELPNG 225 (352)
T ss_pred hhhccceEEEEeCCCCCHHHHHHHHcCcc----------------------ccccccccCCCCCCCCcCceeEEEECCCC
Confidence 99999999999999999999999999976 36788999999999999999999999878
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
++|+||||++.+++ ..+.+++...|+++.+.
T Consensus 226 ~~liDTPG~~~~~l-~~~~~~l~~~F~e~~~~ 256 (352)
T PRK12289 226 GLLADTPGFNQPDL-DCSPRELAHYFPEARQR 256 (352)
T ss_pred cEEEeCCCcccccc-ccCHHHHHhhHHHHHHh
Confidence 89999999999999 57889999999999873
No 3
>PRK12288 GTPase RsgA; Reviewed
Probab=100.00 E-value=5.8e-46 Score=348.39 Aligned_cols=237 Identities=32% Similarity=0.471 Sum_probs=207.3
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccC--CeeEEeeecccccccccch----
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVD--RRGMIENVFQRSTEILDPP---- 73 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~--~~~~i~~i~~R~~~~~r~~---- 73 (276)
|.+.|.+. .|.| .|.++ +|..+.|.+||+++ .|+|||||.++..+... ..|+|++|+||+|.|.||.
T Consensus 40 ~~g~Vi~~-~~~~~~v~~~-~g~~~~~~~~g~~~----~~~vGD~V~~~~~~~~~~~~~~~I~~il~R~n~L~R~~~~~~ 113 (347)
T PRK12288 40 QEGIVISR-FGQHADVEAA-DGEVHRCNIRRTIR----SLVTGDRVVWRPGKEALEGVSGVVEAVHPRTSVLTRPDYYDG 113 (347)
T ss_pred cceEEEEE-ECCEEEEEeC-CCcEEEEEecccCC----CCCCCcEEEEEeCCCcccccceEEEEEecccceEECCCcccc
Confidence 45778887 5555 77664 78889999999885 39999999998542111 1389999999999999975
Q ss_pred ----hccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHH---HHHHHHHHhhhcCceeEEEecCC
Q 023887 74 ----VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGYEPLFCSVES 146 (276)
Q Consensus 74 ----~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~---~~~~~~~~~~~~~~~~~~~s~~~ 146 (276)
|||+|++++|++.. |.+++.+++|||..++..++|+++|+||+||.+++ ....+...|.+++++++.+|+.+
T Consensus 114 ~q~iaANvD~vlIV~s~~-p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~t 192 (347)
T PRK12288 114 VKPIAANIDQIVIVSAVL-PELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHT 192 (347)
T ss_pred cceEEEEccEEEEEEeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 79999999999975 89999999999999999999999999999998754 23456667778899999999999
Q ss_pred ccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 147 ~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
+.+++.|...+.+++++|+|+||||||||||+|+|.. ...+++++...++|||||+..
T Consensus 193 g~GideL~~~L~~ki~~~vG~sgVGKSTLiN~Ll~~~----------------------~~~t~~is~~~~rGrHTT~~~ 250 (347)
T PRK12288 193 GEGLEELEAALTGRISIFVGQSGVGKSSLINALLPEA----------------------EILVGDVSDNSGLGQHTTTAA 250 (347)
T ss_pred CcCHHHHHHHHhhCCEEEECCCCCCHHHHHHHhcccc----------------------ceeeccccCcCCCCcCceeeE
Confidence 9999999999999999999999999999999999976 367899999999999999999
Q ss_pred EEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 227 SLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 227 ~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
.++.++.+++|+||||+++++++.++.+++...|+||.+.
T Consensus 251 ~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~ei~~~ 290 (347)
T PRK12288 251 RLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFVEFRDY 290 (347)
T ss_pred EEEEecCCCEEEECCCCCcccCCCCCHHHHHHhhHHHHHH
Confidence 9999988889999999999999988889999999999875
No 4
>PRK00098 GTPase RsgA; Reviewed
Probab=100.00 E-value=2.5e-44 Score=331.46 Aligned_cols=240 Identities=36% Similarity=0.554 Sum_probs=212.8
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeecccccccccchh-----
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPV----- 74 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~~----- 74 (276)
|.+.|.+. +|.| .|.++ +|.++.|++||++++.+..|+|||||.++.. .++.|+|++++||+|.+.|+.+
T Consensus 1 ~~g~v~~~-~~~~~~v~~~-~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~--~~~~g~i~~i~~R~~~l~R~~~~~~q~ 76 (298)
T PRK00098 1 MEGLIIKA-LGGFYYVESE-DGQVYQCRARGKFRKKTNTPAVGDRVEFSAE--NNDEGVILEIHERKNLLVRPPIFKSKL 76 (298)
T ss_pred CeEEEEEE-ECCEEEEEEC-CCCEEEEEeccccccCCCCcCCCCEEEEEEC--CCCcEEEEEEeCCCceEECCCCccccc
Confidence 78899998 6666 77654 5789999999999876778999999999863 3467899999999999999886
Q ss_pred --ccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCC-CHHHHHHHHHHhhhcCceeEEEecCCccchH
Q 023887 75 --ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLHTWGYEPLFCSVESKLGLD 151 (276)
Q Consensus 75 --anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 151 (276)
+|+|++++|+++..|.++...++|++..++..++|+++|+||+||. +.+....|...+.+++++++.+|+.++.+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~ 156 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLD 156 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHH
Confidence 9999999999998898888899999999999999999999999997 4444456667777889999999999999999
Q ss_pred HHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEec
Q 023887 152 SLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL 231 (276)
Q Consensus 152 ~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~ 231 (276)
.|...++|++++|+|+||||||||+|+|+|... ..+++++...++|+|||+...++.+
T Consensus 157 ~L~~~l~gk~~~~~G~sgvGKStlin~l~~~~~----------------------~~~g~v~~~~~~G~htT~~~~~~~~ 214 (298)
T PRK00098 157 ELKPLLAGKVTVLAGQSGVGKSTLLNALAPDLE----------------------LKTGEISEALGRGKHTTTHVELYDL 214 (298)
T ss_pred HHHhhccCceEEEECCCCCCHHHHHHHHhCCcC----------------------CCCcceeccCCCCCcccccEEEEEc
Confidence 999999999999999999999999999999762 4567787788999999999999999
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
+.+++++||||++.++++..+.+++.+.|+++.+.
T Consensus 215 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~f~~~~~~ 249 (298)
T PRK00098 215 PGGGLLIDTPGFSSFGLHDLEAEELEHYFPEFRPL 249 (298)
T ss_pred CCCcEEEECCCcCccCCCCCCHHHHHHHHHHHHHH
Confidence 88899999999999999988899999999999874
No 5
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=100.00 E-value=5.1e-44 Score=327.79 Aligned_cols=236 Identities=40% Similarity=0.594 Sum_probs=205.8
Q ss_pred EEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeecccccccccch--------h
Q 023887 4 IVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP--------V 74 (276)
Q Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~--------~ 74 (276)
.|.+. .|.| .+.++ +..+.|++||++++.+..|+|||||.++..+ ++.++|++++||+|.|.||. +
T Consensus 2 ~v~~~-~~~~~~v~~~--~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R~~~l~R~~~~~~~~~i~ 76 (287)
T cd01854 2 RVIAV-HGGFYDVETE--GGELRCRARGKLRKKGIKPVVGDWVEVEPDD--DGEGVIVRVLPRKNLLSRPAAGGREQVIA 76 (287)
T ss_pred EEEEE-ECCEEEEEEC--CeEEEEEeccccccCCCCccCCCEEEEEecC--CCcEEEEEEECCCceEEccCCCCcceeEE
Confidence 45556 5566 66654 6789999999998766789999999998643 45799999999999999998 9
Q ss_pred ccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccchHHHH
Q 023887 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSLL 154 (276)
Q Consensus 75 anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~ 154 (276)
+|+|++++|+++..|.+++..++|+|..++..++|+++|+||+||.++.....+...+.+++++++.+|+.++.+++.|.
T Consensus 77 anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~ 156 (287)
T cd01854 77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELR 156 (287)
T ss_pred EeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHH
Confidence 99999999999998887888999999999999999999999999987654445556666789999999999999999999
Q ss_pred hhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCC
Q 023887 155 QRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234 (276)
Q Consensus 155 ~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~ 234 (276)
..+++++++|+|+||||||||||+|.|... ..+++++...++|+|||+...++.+..+
T Consensus 157 ~~L~~k~~~~~G~sg~GKSTlin~l~~~~~----------------------~~~g~v~~~~~~g~~tT~~~~~~~~~~~ 214 (287)
T cd01854 157 EYLKGKTSVLVGQSGVGKSTLINALLPDLD----------------------LATGEISEKLGRGRHTTTHRELFPLPGG 214 (287)
T ss_pred hhhccceEEEECCCCCCHHHHHHHHhchhh----------------------ccccceeccCCCCCcccceEEEEEcCCC
Confidence 999999999999999999999999999762 3455566667899999999999999878
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
++++||||++.+++...+.+++...|+++.+.
T Consensus 215 ~~liDtPG~~~~~~~~~~~~~~~~~f~~~~~~ 246 (287)
T cd01854 215 GLLIDTPGFREFGLLHIDPEELAHYFPEFREL 246 (287)
T ss_pred CEEEECCCCCccCCccCCHHHHHHHhHHHHHH
Confidence 89999999999998778899999999999874
No 6
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=100.00 E-value=5e-42 Score=308.07 Aligned_cols=203 Identities=39% Similarity=0.565 Sum_probs=184.3
Q ss_pred ceeCcEEEEeeecccCCeeEEeeecccccccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 023887 39 VLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVE 118 (276)
Q Consensus 39 ~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~D 118 (276)
|+|||||.++..+ ++.++|+++++|.+.+.|+.++|+|++++|+++..|.++...+++++..++..++|+++|+||+|
T Consensus 1 ~~vGD~V~~~~~~--~~~~~i~~i~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~D 78 (245)
T TIGR00157 1 LVVGDRVVWEPGN--VVKVYGGAIAERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKID 78 (245)
T ss_pred CCCCcEEEEEecC--CCceEEEEEecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcc
Confidence 5899999998653 35689999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCCHHH-HHHHHHHhhhcCceeEEEecCCccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc
Q 023887 119 LVDEEV-LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP 197 (276)
Q Consensus 119 l~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p 197 (276)
|.++.. ..++...+.+.+++++.+|+.++.+++.+...+.+++++|+|+||||||||||.|.+..
T Consensus 79 L~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~l~~~~~~~~G~sgvGKStLiN~L~~~~-------------- 144 (245)
T TIGR00157 79 LLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEALQNRISVFAGQSGVGKSSLINALDPSV-------------- 144 (245)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhhhcCCEEEEECCCCCCHHHHHHHHhhhh--------------
Confidence 976443 33566777788999999999999999999999999999999999999999999999976
Q ss_pred cccceeeccccccccccccCCCCceeeeEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 198 ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 198 ~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
..++++++.+.++|||||++..++++ .+++|+||||++.++++..+.+++...|+||.+.
T Consensus 145 --------~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~~~l~~~~~~~~~~~f~e~~~~ 204 (245)
T TIGR00157 145 --------KQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNEFGLWHLEPEQLTQGFVEFRDY 204 (245)
T ss_pred --------hccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccccCCCCCCHHHHHHhCHHHHHH
Confidence 36788999999999999999999999 5789999999999999999999999999999874
No 7
>PRK01889 GTPase RsgA; Reviewed
Probab=100.00 E-value=9.7e-39 Score=300.87 Aligned_cols=234 Identities=27% Similarity=0.387 Sum_probs=193.3
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccc----cCCCceeCcEEEEeeecccCCeeEEeeecccccccccch--
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKK----IKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPP-- 73 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~----~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~-- 73 (276)
|.+.|.+. .|.| .|.++ +| ++.|.++|++++ .+..|+|||||.++. ++.|+|++++||+|.+.||.
T Consensus 29 ~~g~v~~~-~~~~~~v~~~-~~-~~~~~~~gk~~~~~~~~~~~~~vGD~V~~~~----~~~g~I~~i~pR~~~L~R~~~~ 101 (356)
T PRK01889 29 EPGRVVEE-HRSGYVVATE-EG-EVRAEVSGKWRHEAFPPGDRPAVGDWVLLDN----EKKARIVRLLPRRSLFSRKAAG 101 (356)
T ss_pred ccEEEEEE-ECCEEEEEEC-Cc-EEEEEecchhhccccccCCCCccCcEEEEec----CCceEEEEEECCCceEEcCCCC
Confidence 45778888 5555 77664 44 678999999975 345699999999974 35689999999999999986
Q ss_pred --------hccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEEec
Q 023887 74 --------VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSV 144 (276)
Q Consensus 74 --------~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~ 144 (276)
|||+|++++|++++ |.+++.+++|||+.|+..+++++||+||+||+++.. ...+...+ ..+|+++.+|+
T Consensus 102 ~~~~~q~iaANvD~vliV~s~~-p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa 179 (356)
T PRK01889 102 TRSEEQLIAANVDTVFIVCSLN-HDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSA 179 (356)
T ss_pred CCccceeEEEeCCEEEEEEecC-CCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEEC
Confidence 69999999999996 889999999999999999999999999999987532 22223333 56899999999
Q ss_pred CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCcee
Q 023887 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT 223 (276)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt 223 (276)
.++.+++.|...+ +|++++|+|+||+|||||+|+|+|.. .|..|+|.+++ ++++|+|
T Consensus 180 ~~g~gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~------------~~~~G~i~~~~----------~~g~~tt 237 (356)
T PRK01889 180 LDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEE------------VQKTGAVREDD----------SKGRHTT 237 (356)
T ss_pred CCCccHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhc------------ccceeeEEECC----------CCCcchh
Confidence 9999999999998 68999999999999999999999966 56666666543 4567888
Q ss_pred eeEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 224 RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 224 ~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
+...+..+..+.+++||||++.+.+.... ..+...|+++.+.
T Consensus 238 ~~~~l~~l~~~~~l~DtpG~~~~~l~~~~-~~l~~~f~~~~~~ 279 (356)
T PRK01889 238 THRELHPLPSGGLLIDTPGMRELQLWDAE-DGVEETFSDIEEL 279 (356)
T ss_pred hhccEEEecCCCeecCCCchhhhcccCch-hhHHHhHHHHHHH
Confidence 88888888778899999999999987643 6688999998874
No 8
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.92 E-value=4.8e-26 Score=191.81 Aligned_cols=119 Identities=45% Similarity=0.747 Sum_probs=91.8
Q ss_pred HHHHHHhhhcCceeEEEecCCccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 126 NTWKSRLHTWGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 126 ~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
++|.+.|+++||+++.+|..++.+++.|...+++++++|+|+||||||||+|.|.+..
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~---------------------- 59 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPEA---------------------- 59 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS----------------------
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhc----------------------
Confidence 4677889999999999999999999999999999999999999999999999999976
Q ss_pred cccccccccccCCCCceeeeEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 206 DQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 206 g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
.++++++|.+.++|+|||++..+++++.+++|+|||||+.+++...+.++|...|+||.+.
T Consensus 60 ~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~~~~~~~l~~~F~e~~~~ 120 (161)
T PF03193_consen 60 KQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLWHIDPEELAQYFPEFRPL 120 (161)
T ss_dssp ----S--------------SEEEEEETTSEEEECSHHHHT--GCCS-HHHHHHCSGGGHHH
T ss_pred chhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccccCCHHHHHHHHHHhccc
Confidence 3788999999999999999999999988999999999999999989999999999999974
No 9
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.89 E-value=1.9e-22 Score=168.57 Aligned_cols=142 Identities=27% Similarity=0.364 Sum_probs=108.6
Q ss_pred chhccccEEEEEEEcCCCCC-CHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhc-CceeEEEecCCccc
Q 023887 72 PPVANVDHLLLLFSMDQPKL-EPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-GYEPLFCSVESKLG 149 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~-~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 149 (276)
..+.++|++++|+|++.|.. ....+++++.. ...++|+++|+||+|+.+++....|...+.+. .+.++..|+.++.+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~ 82 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFG 82 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccccc
Confidence 46789999999999988743 35678888864 24569999999999999887777777777653 23456778887777
Q ss_pred hHHHHhhc----------cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCC
Q 023887 150 LDSLLQRL----------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (276)
Q Consensus 150 l~~l~~~l----------~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~g 219 (276)
++.|...+ ++..++++|+||||||||+|+|.+... ..+++.+|
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~-------------------------~~~~~~~g-- 135 (157)
T cd01858 83 KGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKV-------------------------CKVAPIPG-- 135 (157)
T ss_pred HHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCc-------------------------eeeCCCCC--
Confidence 77666554 244678999999999999999998541 12233344
Q ss_pred CceeeeEEEEecCCCcEEEecCCC
Q 023887 220 KHTTRHVSLLPLSGGGYLADTPGF 243 (276)
Q Consensus 220 k~tt~~~~~~~~~~~~~iiDtPg~ 243 (276)
+|+...++.++.+.+++||||+
T Consensus 136 --~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 136 --ETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred --eeEeEEEEEcCCCEEEEECcCC
Confidence 8888999998878999999995
No 10
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.88 E-value=7e-22 Score=162.59 Aligned_cols=134 Identities=31% Similarity=0.348 Sum_probs=105.5
Q ss_pred cchhccccEEEEEEEcCCCCCCH-HHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccc
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~-~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (276)
+..++++|.+++|+|++.|..+. ..+++++.... .++|+++|+||+|+.+++....|.+.+++.+++++++|+.++..
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 34689999999999998885443 47788875432 48999999999999887777778788888888889988876543
Q ss_pred hHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEE
Q 023887 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLL 229 (276)
Q Consensus 150 l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~ 229 (276)
+++++|+||+|||||+|.|.+.. ...++..+| +|++...+
T Consensus 85 -----------~~~~~G~~~vGKstlin~l~~~~-------------------------~~~~~~~~~----~~~~~~~~ 124 (141)
T cd01857 85 -----------TIGLVGYPNVGKSSLINALVGKK-------------------------KVSVSATPG----KTKHFQTI 124 (141)
T ss_pred -----------EEEEECCCCCCHHHHHHHHhCCC-------------------------ceeeCCCCC----cccceEEE
Confidence 79999999999999999999854 123444556 45556677
Q ss_pred ecCCCcEEEecCCCCC
Q 023887 230 PLSGGGYLADTPGFNQ 245 (276)
Q Consensus 230 ~~~~~~~iiDtPg~~~ 245 (276)
.++.+.+++||||+..
T Consensus 125 ~~~~~~~i~DtpG~~~ 140 (141)
T cd01857 125 FLTPTITLCDCPGLVF 140 (141)
T ss_pred EeCCCEEEEECCCcCC
Confidence 7777889999999943
No 11
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.84 E-value=4.9e-20 Score=153.81 Aligned_cols=135 Identities=30% Similarity=0.367 Sum_probs=104.2
Q ss_pred cEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhc-CceeEEEecCCccchHHHHh
Q 023887 78 DHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-GYEPLFCSVESKLGLDSLLQ 155 (276)
Q Consensus 78 D~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~l~~l~~ 155 (276)
|++++|+|++.|..+ ...+++ ..+...++|+++|+||+|+.+++....|...+... ++.++.+|+.++.+++.|..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIER--VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHH--HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 789999999887543 234443 23456789999999999998877666776555543 55789999999888887766
Q ss_pred hc------------------cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 156 RL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 156 ~l------------------~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
.+ .+.+++++|.||+|||||+|+|.+... . . .+
T Consensus 79 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~----------------------~---~----~~ 129 (155)
T cd01849 79 AFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLK----------------------L---K----VG 129 (155)
T ss_pred HHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHcccc----------------------c---c----cc
Confidence 32 457899999999999999999998541 1 1 23
Q ss_pred CCCceeeeEEEEecCCCcEEEecCCC
Q 023887 218 RGKHTTRHVSLLPLSGGGYLADTPGF 243 (276)
Q Consensus 218 ~gk~tt~~~~~~~~~~~~~iiDtPg~ 243 (276)
.++|+|+....+....+.+++||||+
T Consensus 130 ~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 130 NVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred CCCCcccceEEEEecCCEEEEECCCC
Confidence 44669999999988888899999996
No 12
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.84 E-value=6.3e-20 Score=167.44 Aligned_cols=148 Identities=26% Similarity=0.381 Sum_probs=115.0
Q ss_pred cccchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCc
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 147 (276)
.++..++++|++++|+|++.|..+ ...+++++ .++|+++|+||+||.+++....|.+.+.+.+++++.+|+.++
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~ 88 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKG 88 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCc
Confidence 345678999999999999888543 33566665 378999999999998877667787777666778899999988
Q ss_pred cchHHHHhhc----c--------------CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 148 LGLDSLLQRL----R--------------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 148 ~~l~~l~~~l----~--------------g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
.+++.|...+ + ...++++|.||||||||||.|.+.. .
T Consensus 89 ~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~-------------------------~ 143 (276)
T TIGR03596 89 KGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKK-------------------------V 143 (276)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCC-------------------------c
Confidence 8887775543 1 2369999999999999999999844 1
Q ss_pred cccccccCCCCceeeeEEEEecCCCcEEEecCCCCCCCCCh
Q 023887 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250 (276)
Q Consensus 210 ~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~ 250 (276)
..++..+| +|+..+++....+..++||||+..+.+..
T Consensus 144 ~~~~~~~g----~T~~~~~~~~~~~~~l~DtPG~~~~~~~~ 180 (276)
T TIGR03596 144 AKVGNRPG----VTKGQQWIKLSDGLELLDTPGILWPKFED 180 (276)
T ss_pred cccCCCCC----eecceEEEEeCCCEEEEECCCcccCCCCc
Confidence 22333445 78888899887788999999998777644
No 13
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.82 E-value=4.1e-19 Score=162.96 Aligned_cols=147 Identities=27% Similarity=0.414 Sum_probs=114.3
Q ss_pred ccchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCcc
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 148 (276)
++..++++|.+++|+|++.|..+ ...+++++ .++|.++|+||+||.+++..+.|...+.+.+++++.+|+.++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~ 92 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSENPMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQ 92 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCChhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 34578999999999999888443 33455554 3799999999999988766677877776667788999998888
Q ss_pred chHHHHhhc------------------cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 149 GLDSLLQRL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 149 ~l~~l~~~l------------------~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+++.|...+ ++.+++++|.||||||||+|+|.+.. ..
T Consensus 93 gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~-------------------------~~ 147 (287)
T PRK09563 93 GVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKK-------------------------IA 147 (287)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCC-------------------------cc
Confidence 877765542 12379999999999999999999854 22
Q ss_pred ccccccCCCCceeeeEEEEecCCCcEEEecCCCCCCCCCh
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~ 250 (276)
.++..+| +|+..+.+..+.+.+++||||+..+.+..
T Consensus 148 ~~~~~~g----~T~~~~~~~~~~~~~l~DtPGi~~~~~~~ 183 (287)
T PRK09563 148 KTGNRPG----VTKAQQWIKLGKGLELLDTPGILWPKLED 183 (287)
T ss_pred ccCCCCC----eEEEEEEEEeCCcEEEEECCCcCCCCCCc
Confidence 3344445 88889999988889999999998777543
No 14
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.82 E-value=1.5e-19 Score=153.25 Aligned_cols=142 Identities=30% Similarity=0.457 Sum_probs=106.9
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHH-HHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCC
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVES 146 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~-~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~ 146 (276)
...+..++++|++++|+|+..|..+.. .+..+ ..++|+++|+||+|+.+++....|.+.+...++.++.+|+.+
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~-----~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~ 85 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKI-----LGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKS 85 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCChhhHhH-----hcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCC
Confidence 334668999999999999987754322 22222 247899999999999877655566666666667889999999
Q ss_pred ccchHHHHhhccC-----------------CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 147 KLGLDSLLQRLRD-----------------QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 147 ~~~l~~l~~~l~g-----------------~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
+.+++.|...+.+ .+++++|.+|+|||||+|.|.+.. .
T Consensus 86 ~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~-------------------------~ 140 (171)
T cd01856 86 GKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKK-------------------------V 140 (171)
T ss_pred cccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCC-------------------------c
Confidence 8888887765422 379999999999999999999844 1
Q ss_pred cccccccCCCCceeeeEEEEecCCCcEEEecCCC
Q 023887 210 GEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243 (276)
Q Consensus 210 ~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~ 243 (276)
...+..++ +|+..+++....+..++||||+
T Consensus 141 ~~~~~~~~----~T~~~~~~~~~~~~~~iDtpG~ 170 (171)
T cd01856 141 AKVGNKPG----VTKGIQWIKISPGIYLLDTPGI 170 (171)
T ss_pred eeecCCCC----EEeeeEEEEecCCEEEEECCCC
Confidence 12222333 7888888887778899999997
No 15
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.81 E-value=5.3e-19 Score=147.22 Aligned_cols=143 Identities=31% Similarity=0.502 Sum_probs=105.8
Q ss_pred cccchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCc
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK 147 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 147 (276)
+.|.+.+++|.+++|+|+..|... ...+.+++ ...++|+++|+||+|+.+++....|.......+++++.+|+.++
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~---~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 81 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYV---LELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKER 81 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHH---HhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcccc
Confidence 456678899999999999876432 22344443 44689999999999998765555554333445678899999999
Q ss_pred cchHHHHhhc--------cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCC
Q 023887 148 LGLDSLLQRL--------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (276)
Q Consensus 148 ~~l~~l~~~l--------~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~g 219 (276)
.+++.|...+ ....++++|.||+|||||+|.|.+.. ....++..|
T Consensus 82 ~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~-------------------------~~~~~~~~~-- 134 (156)
T cd01859 82 LGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRH-------------------------SASTSPSPG-- 134 (156)
T ss_pred ccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCC-------------------------ccccCCCCC--
Confidence 9988877765 24688999999999999999999743 122222334
Q ss_pred CceeeeEEEEecCCCcEEEecCCC
Q 023887 220 KHTTRHVSLLPLSGGGYLADTPGF 243 (276)
Q Consensus 220 k~tt~~~~~~~~~~~~~iiDtPg~ 243 (276)
+|+..+++..+.+..++||||+
T Consensus 135 --~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 135 --YTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred --eeeeeEEEEcCCCEEEEECcCC
Confidence 6677778777778899999996
No 16
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=8.8e-19 Score=163.31 Aligned_cols=145 Identities=32% Similarity=0.493 Sum_probs=116.5
Q ss_pred chhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhc-CceeEEEecCCccc
Q 023887 72 PPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTW-GYEPLFCSVESKLG 149 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 149 (276)
..+..+|.++.|+|++.|..+ ...+++++ .+++.++|+||+||++....++|...+.+- +...++.+.....+
T Consensus 30 ~~~~~~d~vvevvDar~P~~s~~~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~ 104 (322)
T COG1161 30 EVLKSVDVVVEVVDARDPLGTRNPELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQG 104 (322)
T ss_pred HhcccCCEEEEEEeccccccccCccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccC
Confidence 468899999999999999654 34788887 467779999999999999999999998776 56677777665554
Q ss_pred hHHHH--------hh---c--cC-----CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 150 LDSLL--------QR---L--RD-----QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 150 l~~l~--------~~---l--~g-----~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
...+. .. + .| ..++++|.||||||||||+|+|.. ...
T Consensus 105 ~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~-------------------------~~~ 159 (322)
T COG1161 105 GKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKK-------------------------VAK 159 (322)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhccc-------------------------cee
Confidence 44443 21 1 22 689999999999999999999954 345
Q ss_pred cccccCCCCceeeeEEEEecCCCcEEEecCCCCCCCCCh
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~ 250 (276)
++..+| +|+..+.+..+.+.+|+||||+..+..+.
T Consensus 160 ~s~~PG----~Tk~~q~i~~~~~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 160 TSNRPG----TTKGIQWIKLDDGIYLLDTPGIIPPKFDD 194 (322)
T ss_pred eCCCCc----eecceEEEEcCCCeEEecCCCcCCCCccc
Confidence 556666 99999999999999999999998777544
No 17
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.79 E-value=1.7e-19 Score=154.50 Aligned_cols=122 Identities=20% Similarity=0.281 Sum_probs=107.5
Q ss_pred ceeEEEecCCcc-chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
|+.+...|..+. .++++++.+ +|+.+.++|+||+||||||++|.+.. .|+.|+|+++|.+++.+..
T Consensus 4 f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e------------~pt~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 4 FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE------------RPTRGKILVNGHDLSRLKG 71 (223)
T ss_pred ehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh------------cCCCceEEECCeecccccc
Confidence 445566676555 899999998 89999999999999999999999977 8999999999999998864
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
+. -+..++++++++|++++
T Consensus 72 ~~--iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIA 149 (223)
T COG2884 72 RE--IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIA 149 (223)
T ss_pred cc--cchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHH
Confidence 32 35688999999998765
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+|.|||+- ++|+....++.++|.+|...| ++++|||.
T Consensus 150 RAiV~~P~vLlADEPTG---NLDp~~s~~im~lfeeinr~GtTVl~ATHd~ 197 (223)
T COG2884 150 RAIVNQPAVLLADEPTG---NLDPDLSWEIMRLFEEINRLGTTVLMATHDL 197 (223)
T ss_pred HHHccCCCeEeecCCCC---CCChHHHHHHHHHHHHHhhcCcEEEEEeccH
Confidence 69999999 999999999999999999999 99999986
No 18
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.78 E-value=4.6e-18 Score=145.18 Aligned_cols=136 Identities=29% Similarity=0.367 Sum_probs=95.2
Q ss_pred cEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCc---------
Q 023887 78 DHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESK--------- 147 (276)
Q Consensus 78 D~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~--------- 147 (276)
|.+++|+|++.|..+ ...+.+++. ....++|.++|+||+||++++....|.+.+.+....+.+.+....
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKS 79 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhcc
Confidence 789999999987433 335555532 234579999999999999999888999888765433333332211
Q ss_pred ----------------cchHHHHhhc-----c-----CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccc
Q 023887 148 ----------------LGLDSLLQRL-----R-----DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS 201 (276)
Q Consensus 148 ----------------~~l~~l~~~l-----~-----g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~ 201 (276)
.+.+.+...+ + ...++++|.||+|||||||+|.|..
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~------------------ 141 (172)
T cd04178 80 VKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSR------------------ 141 (172)
T ss_pred cccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcc------------------
Confidence 0112221111 1 2489999999999999999999854
Q ss_pred eeeccccccccccccCCCCceeeeEEEEecCCCcEEEecCCC
Q 023887 202 KWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGF 243 (276)
Q Consensus 202 i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~ 243 (276)
...++..+| +|+..+.+..+.+..++||||+
T Consensus 142 -------~~~~~~~pg----~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 142 -------ACNVGATPG----VTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred -------cceecCCCC----eEcceEEEEeCCCEEEEECcCC
Confidence 223344455 8888888888778899999996
No 19
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.78 E-value=3.2e-18 Score=147.17 Aligned_cols=146 Identities=23% Similarity=0.354 Sum_probs=100.4
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH----HHHHH--HHhhhcCc---eeEEEe
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV----LNTWK--SRLHTWGY---EPLFCS 143 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~----~~~~~--~~~~~~~~---~~~~~s 143 (276)
...++|.+++|+|+..|..+.. +.+ .....++|+++|+||+|+.+++. .+.|. ..+...++ .++.+|
T Consensus 31 ~~~~ad~il~VvD~~~~~~~~~--~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vS 106 (190)
T cd01855 31 ISPKKALVVHVVDIFDFPGSLI--PRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILIS 106 (190)
T ss_pred cccCCcEEEEEEECccCCCccc--hhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEE
Confidence 5689999999999976643321 121 12335789999999999975432 22232 11123333 578899
Q ss_pred cCCccchHHHHhhc-----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCC
Q 023887 144 VESKLGLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (276)
Q Consensus 144 ~~~~~~l~~l~~~l-----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~ 218 (276)
+.++.+++.|...+ .+..++|+|.||||||||||+|.+.... ... .......+..+|
T Consensus 107 A~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvGKStliN~l~~~~~~----------~~~-------~~~~~~~~~~~g- 168 (190)
T cd01855 107 AKKGWGVEELINAIKKLAKKGGDVYVVGATNVGKSTLINALLKKDNG----------KKK-------LKDLLTTSPIPG- 168 (190)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCCHHHHHHHHHHhccc----------ccc-------cccccccCCCCC-
Confidence 99999998887776 3578999999999999999999985410 000 001112333333
Q ss_pred CCceeeeEEEEecCCCcEEEecCCC
Q 023887 219 GKHTTRHVSLLPLSGGGYLADTPGF 243 (276)
Q Consensus 219 gk~tt~~~~~~~~~~~~~iiDtPg~ 243 (276)
||+....+.+..+.+++||||+
T Consensus 169 ---tT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 169 ---TTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred ---eeeeeEEEecCCCCEEEeCcCC
Confidence 9999999998778999999996
No 20
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=8.6e-19 Score=157.27 Aligned_cols=118 Identities=21% Similarity=0.294 Sum_probs=99.4
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++++||||+|||||+++|+|.. +|.+|+|.++|+++....
T Consensus 6 ~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll------------~p~~G~i~~~g~~~~~~~- 72 (254)
T COG1121 6 EVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL------------KPSSGEIKIFGKPVRKRR- 72 (254)
T ss_pred EEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------cCCcceEEEccccccccc-
Confidence 4567888998657999999988 89999999999999999999999976 999999999988654432
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
....++|+||....
T Consensus 73 -------~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~ 145 (254)
T COG1121 73 -------KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQK 145 (254)
T ss_pred -------cCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHH
Confidence 22356666663211
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|||.. ++|.....++.+++.+++++| |+++|||++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~---gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~ 200 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFT---GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence 79999999 999999999999999999988 999999985
No 21
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.77 E-value=7.6e-19 Score=158.16 Aligned_cols=120 Identities=24% Similarity=0.372 Sum_probs=105.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
.+.+.++|++...++++++.+ +|++++|+||||||||||+++|+|.. +|.+|+|+++|+++...+.+
T Consensus 5 ~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l------------~p~~G~V~l~g~~i~~~~~k 72 (258)
T COG1120 5 VENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL------------KPKSGEVLLDGKDIASLSPK 72 (258)
T ss_pred EEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC------------CCCCCEEEECCCchhhcCHH
Confidence 467889999999999999998 89999999999999999999999976 99999999999999887754
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
. ..+.+++++|....
T Consensus 73 e-----lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv 147 (258)
T COG1120 73 E-----LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRV 147 (258)
T ss_pred H-----HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHH
Confidence 4 55677777776311
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||+. .||...+-++.+++.++.++ | ++++.||+|
T Consensus 148 ~iArALaQ~~~iLLLDEPTs---~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN 200 (258)
T COG1120 148 LIARALAQETPILLLDEPTS---HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN 200 (258)
T ss_pred HHHHHHhcCCCEEEeCCCcc---ccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 69999999 99998999999999999954 5 899999985
No 22
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.76 E-value=1.1e-18 Score=152.13 Aligned_cols=120 Identities=24% Similarity=0.308 Sum_probs=103.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+..+|++...+++++..+ +|++++++||||+||||||++|.++. +|++|+|+++|..+..-...
T Consensus 5 i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE------------~~~~G~I~i~g~~~~~~~~~ 72 (240)
T COG1126 5 IKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE------------EPDSGSITVDGEDVGDKKDI 72 (240)
T ss_pred EEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc------------CCCCceEEECCEeccchhhH
Confidence 467889999999999999998 89999999999999999999999977 99999999999765432111
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
...++.+++++|.+++
T Consensus 73 ----~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIA 148 (240)
T COG1126 73 ----LKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIA 148 (240)
T ss_pred ----HHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHH
Confidence 1256778888887655
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||+. .||+.-..++.+.+.++++.| ++++||+|
T Consensus 149 RALaM~P~vmLFDEPTS---ALDPElv~EVL~vm~~LA~eGmTMivVTHEM 196 (240)
T COG1126 149 RALAMDPKVMLFDEPTS---ALDPELVGEVLDVMKDLAEEGMTMIIVTHEM 196 (240)
T ss_pred HHHcCCCCEEeecCCcc---cCCHHHHHHHHHHHHHHHHcCCeEEEEechh
Confidence 69999999 999999999999999999999 89999987
No 23
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.75 E-value=8.1e-18 Score=161.32 Aligned_cols=166 Identities=26% Similarity=0.332 Sum_probs=129.2
Q ss_pred CeeEEeeecccccccccc---hhccccEEEEEEEcCCCC-CCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Q 023887 55 RRGMIENVFQRSTEILDP---PVANVDHLLLLFSMDQPK-LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKS 130 (276)
Q Consensus 55 ~~~~i~~i~~R~~~~~r~---~~anvD~vl~v~~~~~p~-~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~ 130 (276)
++..+.+.++|.-.++|. .+.-+|+|+.++|+++|. |.+..|++|..... ..+..+|++||+||.+++....|.+
T Consensus 150 ~e~l~lTpFErNLE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d-~~K~~~LLvNKaDLl~~~qr~aWa~ 228 (562)
T KOG1424|consen 150 NEKLVLTPFERNLEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-PSKANVLLVNKADLLPPEQRVAWAE 228 (562)
T ss_pred cCCeeechhhhCHHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccc-cccceEEEEehhhcCCHHHHHHHHH
Confidence 345777888888888885 799999999999999995 55678999986533 3467799999999999999999999
Q ss_pred HhhhcCceeEEEecCC------c----------cchHH--------------------------HHhh-----c------
Q 023887 131 RLHTWGYEPLFCSVES------K----------LGLDS--------------------------LLQR-----L------ 157 (276)
Q Consensus 131 ~~~~~~~~~~~~s~~~------~----------~~l~~--------------------------l~~~-----l------ 157 (276)
+|.+-++.++++|+.. . .+... +... +
T Consensus 229 YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~ 308 (562)
T KOG1424|consen 229 YFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTG 308 (562)
T ss_pred HHHhcCceEEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCC
Confidence 9988778888888643 0 00000 0000 0
Q ss_pred ----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCC
Q 023887 158 ----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG 233 (276)
Q Consensus 158 ----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~ 233 (276)
.-.++++||.|||||||+||+|.|.. .-.+|.-+| -|++++-+.+.+
T Consensus 309 ~~~~~~vtVG~VGYPNVGKSSTINaLvG~K-------------------------kVsVS~TPG----kTKHFQTi~ls~ 359 (562)
T KOG1424|consen 309 ERYKDVVTVGFVGYPNVGKSSTINALVGRK-------------------------KVSVSSTPG----KTKHFQTIFLSP 359 (562)
T ss_pred cCCCceeEEEeecCCCCchhHHHHHHhcCc-------------------------eeeeecCCC----CcceeEEEEcCC
Confidence 01589999999999999999999943 345666777 677888899999
Q ss_pred CcEEEecCCCCCCCCCh
Q 023887 234 GGYLADTPGFNQPSLLK 250 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~ 250 (276)
+..|+|+||.--|++..
T Consensus 360 ~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 360 SVCLCDCPGLVFPSFSP 376 (562)
T ss_pred CceecCCCCccccCCCc
Confidence 99999999998888765
No 24
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=4.7e-18 Score=151.20 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=96.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+..+|.....++++++.+ +|+.++|+||||||||||+|+++|.. +|++|+|.++|+++....
T Consensus 6 i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~------------~p~~G~V~~~g~~v~~p~-- 71 (248)
T COG1116 6 IEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE------------KPTSGEVLLDGRPVTGPG-- 71 (248)
T ss_pred EEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCcccCCCC--
Confidence 456777888888999999998 89999999999999999999999976 999999999999873321
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+++++|...+
T Consensus 72 --------~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 72 --------PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIAR 143 (248)
T ss_pred --------CCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHH
Confidence 234555554322
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||.- .||..++..+.+.+.++.+. + ++++|||++
T Consensus 144 AL~~~P~lLLlDEPFg---ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 144 ALATRPKLLLLDEPFG---ALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred HHhcCCCEEEEcCCcc---hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 79999999 99999999999999999986 3 999999963
No 25
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=4.1e-18 Score=150.68 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=106.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++-+++++++...++++++.+ +|++.+|+|+||+||||||+++.|.. +|++|+|+++|.++..+|+.
T Consensus 11 vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll------------~P~~GeI~i~G~~i~~ls~~ 78 (263)
T COG1127 11 VRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL------------RPDKGEILIDGEDIPQLSEE 78 (263)
T ss_pred EeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC------------CCCCCeEEEcCcchhccCHH
Confidence 456788899999999999998 89999999999999999999999977 99999999999999988853
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
.- ...++.+++++|.+.+
T Consensus 79 ~~--~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 79 EL--YEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HH--HHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHH
Confidence 21 1245678888886533
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||+. ++|++....+.+++.++.+. + ++++|||++
T Consensus 157 ARAialdPell~~DEPts---GLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 157 ARAIALDPELLFLDEPTS---GLDPISAGVIDELIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred HHHHhcCCCEEEecCCCC---CCCcchHHHHHHHHHHHHHhhCCEEEEEECChH
Confidence 69999999 99999999999999999985 5 899999974
No 26
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.73 E-value=6.6e-18 Score=142.46 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=96.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 3 LRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY------------KPDSGEILVDGKEVSFASPR 70 (163)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEECCcCCHH
Confidence 456677787667888888887 89999999999999999999999965 89999999999877654321
Q ss_pred cCCCCceeeeEEEEecCC-----------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 216 SGRGKHTTRHVSLLPLSG-----------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-----------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
. ...+.++++++-. ..+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 71 ~----~~~~~i~~~~qLS~G~~qrl~laral~~~p~illlDEP~~---~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 71 D----ARRAGIAMVYQLSVGERQMVEIARALARNARLLILDEPTA---ALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred H----HHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEEECCCc---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 1 1234566655322 3389999999 999999999999999997655 89999985
No 27
>PRK13796 GTPase YqeH; Provisional
Probab=99.73 E-value=8.2e-17 Score=152.52 Aligned_cols=159 Identities=26% Similarity=0.395 Sum_probs=111.1
Q ss_pred cccc-EEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCH----HHHHHHHHH-hhhcCc---eeEEEec
Q 023887 75 ANVD-HLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKSR-LHTWGY---EPLFCSV 144 (276)
Q Consensus 75 anvD-~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~----~~~~~~~~~-~~~~~~---~~~~~s~ 144 (276)
...| +++.|+|+.++..+ ...+.++. .++|+++|+||+||.+. +....|... ++..|+ .++.+|+
T Consensus 67 ~~~~~lIv~VVD~~D~~~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSA 141 (365)
T PRK13796 67 GDSDALVVNVVDIFDFNGSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISA 141 (365)
T ss_pred cccCcEEEEEEECccCCCchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEEC
Confidence 4445 88999998654333 22455543 37899999999999863 234455443 344565 5788999
Q ss_pred CCccchHHHHhhc----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCC
Q 023887 145 ESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGK 220 (276)
Q Consensus 145 ~~~~~l~~l~~~l----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk 220 (276)
.++.++++|...+ ++..++++|.||||||||||+|.+... | ..+....| ..+
T Consensus 142 k~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~~~~---------------~-----~~~~~~~s----~~p 197 (365)
T PRK13796 142 QKGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRIIKEIT---------------G-----EKDVITTS----RFP 197 (365)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHhhcc---------------C-----ccceEEec----CCC
Confidence 9988888887765 678999999999999999999997431 0 01112233 334
Q ss_pred ceeeeEEEEecCCCcEEEecCCCCCCC-C-ChhhHHHHHHHHHH
Q 023887 221 HTTRHVSLLPLSGGGYLADTPGFNQPS-L-LKVTKQSLAQTFPE 262 (276)
Q Consensus 221 ~tt~~~~~~~~~~~~~iiDtPg~~~~~-l-~~~~~~~l~~~f~e 262 (276)
+||+....++++.+.+++||||+.... + +.++.+++...++.
T Consensus 198 GTT~~~~~~~l~~~~~l~DTPGi~~~~~~~~~l~~~~l~~~~p~ 241 (365)
T PRK13796 198 GTTLDKIEIPLDDGSFLYDTPGIIHRHQMAHYLSAKDLKIISPK 241 (365)
T ss_pred CccceeEEEEcCCCcEEEECCCccccchhhhcCCHHHHhhcCCC
Confidence 599999999998888999999995332 3 33456667666654
No 28
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.72 E-value=3.2e-18 Score=152.59 Aligned_cols=121 Identities=20% Similarity=0.349 Sum_probs=101.2
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.|+.+++.|.+...++++++.+ +|+.++|+|+|||||||+|+++.+.. +|++|+|.++|+++.+...
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi------------ept~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI------------EPTSGEILIDGEDISDLDP 70 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc------------CCCCceEEECCeecccCCH
Confidence 3567888888888999999998 89999999999999999999999965 9999999999999887543
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
.. .++.++|+-|..++
T Consensus 71 ~~-----LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVG 145 (309)
T COG1125 71 VE-----LRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVG 145 (309)
T ss_pred HH-----HHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHH
Confidence 22 44455554443222
Q ss_pred -----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||.- .+|+++...+.+.|.++.+. + ++++|||++
T Consensus 146 v~RALAadP~ilLMDEPFg---ALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid 197 (309)
T COG1125 146 VARALAADPPILLMDEPFG---ALDPITRKQLQEEIKELQKELGKTIVFVTHDID 197 (309)
T ss_pred HHHHHhcCCCeEeecCCcc---ccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH
Confidence 79999999 99999999999999999975 5 999999974
No 29
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.72 E-value=8.3e-17 Score=152.21 Aligned_cols=159 Identities=28% Similarity=0.394 Sum_probs=111.6
Q ss_pred hhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHH----HHHHHHH-HhhhcCc---eeEEEe
Q 023887 73 PVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS-RLHTWGY---EPLFCS 143 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~----~~~~~~~-~~~~~~~---~~~~~s 143 (276)
.....|.+++|+|+.++..+ ...+.+++ .++|+++|+||+||.+.+ ....|.. .+++.++ .++.+|
T Consensus 60 ~~~~~~~Il~VvD~~d~~~s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vS 134 (360)
T TIGR03597 60 LGDSNALIVYVVDIFDFEGSLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVS 134 (360)
T ss_pred cccCCcEEEEEEECcCCCCCccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEec
Confidence 34577999999998654333 22455443 378999999999998643 3344543 3555666 478899
Q ss_pred cCCccchHHHHhhc----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCC
Q 023887 144 VESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRG 219 (276)
Q Consensus 144 ~~~~~~l~~l~~~l----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~g 219 (276)
+.++.+++++...+ +|..++|+|.+|||||||+|+|.+.... ......+|..+|
T Consensus 135 Ak~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~l~~~~~~--------------------~~~~~~~s~~pg-- 192 (360)
T TIGR03597 135 AKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINKLLKQNNG--------------------DKDVITTSPFPG-- 192 (360)
T ss_pred CCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhhccC--------------------CcceeeecCCCC--
Confidence 99999998887766 4779999999999999999999985410 011234454444
Q ss_pred CceeeeEEEEecCCCcEEEecCCCCCCC--CChhhHHHHHHHH
Q 023887 220 KHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTF 260 (276)
Q Consensus 220 k~tt~~~~~~~~~~~~~iiDtPg~~~~~--l~~~~~~~l~~~f 260 (276)
||+....++.+.+.+++||||+.... .+.++.+++..++
T Consensus 193 --tT~~~~~~~~~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~ 233 (360)
T TIGR03597 193 --TTLDLIEIPLDDGHSLYDTPGIINSHQMAHYLDKKDLKYIT 233 (360)
T ss_pred --eEeeEEEEEeCCCCEEEECCCCCChhHhhhhcCHHHHhhcC
Confidence 99999999987788999999996543 2333444444433
No 30
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.1e-17 Score=155.95 Aligned_cols=118 Identities=20% Similarity=0.282 Sum_probs=102.9
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+..+|++...++++++.+ +|+.++|+||||||||||||+|+|.. +|++|+|.++|.++..+++
T Consensus 5 ~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe------------~~~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 5 ELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE------------EPTSGEILIDGRDVTDLPP 72 (338)
T ss_pred EEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCCh
Confidence 3467788887755788999888 89999999999999999999999976 9999999999999999876
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..++++|++|++.+
T Consensus 73 -------~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAla 145 (338)
T COG3839 73 -------EKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALA 145 (338)
T ss_pred -------hHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHH
Confidence 34789999987533
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. +||.....+++..+.+++++ + +|++|||.
T Consensus 146 RAlVr~P~v~L~DEPlS---nLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq 194 (338)
T COG3839 146 RALVRKPKVFLLDEPLS---NLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ 194 (338)
T ss_pred HHHhcCCCEEEecCchh---HhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH
Confidence 69999999 89988889999999999875 5 89999984
No 31
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.72 E-value=1.2e-17 Score=147.79 Aligned_cols=121 Identities=22% Similarity=0.259 Sum_probs=99.9
Q ss_pred eEEEecCCc----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 139 PLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 139 ~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
.+...|..+ ..++++++.+ +|+.++|+||||||||||||+|.|.. .|++|.++++|.++...+
T Consensus 6 ~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld------------~pt~G~v~i~g~d~~~l~ 73 (226)
T COG1136 6 NVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD------------KPTSGEVLINGKDLTKLS 73 (226)
T ss_pred eeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCceEEECCEEcCcCC
Confidence 444555433 4688888888 89999999999999999999999977 899999999998888776
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
.. .+......++++++|.+++
T Consensus 74 ~~-~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVA 152 (226)
T COG1136 74 EK-ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVA 152 (226)
T ss_pred HH-HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHH
Confidence 43 2334456778888887654
Q ss_pred -----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 -----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 -----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
++.|||+- +||..+.+++.++|.++.+. | ++++|||.
T Consensus 153 IARAL~~~P~iilADEPTg---nLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 153 IARALINNPKIILADEPTG---NLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred HHHHHhcCCCeEEeeCccc---cCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 69999999 99999999999999999865 5 99999985
No 32
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.70 E-value=4.6e-17 Score=152.22 Aligned_cols=152 Identities=28% Similarity=0.362 Sum_probs=119.8
Q ss_pred cchhccccEEEEEEEcCCCC-CCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccc
Q 023887 71 DPPVANVDHLLLLFSMDQPK-LEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLG 149 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~-~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 149 (276)
|..+..+|+|+.|.|+++|. ..+..+|+.+..+. .+++.++||||+||+|.+..++|..++++.+..+.+.+..+...
T Consensus 141 rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~-gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~ 219 (435)
T KOG2484|consen 141 RKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAH-GNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQN 219 (435)
T ss_pred HHHHhhhheEEEeeeccCCCCCCChhHHHHHHhcc-CCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeeccccccc
Confidence 45799999999999999995 55678999886543 35999999999999999999999999999888777776544332
Q ss_pred -------------hHHHHhhc----c------CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 150 -------------LDSLLQRL----R------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 150 -------------l~~l~~~l----~------g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
.+.+...+ . --+++++|-|+|||||+||.|....
T Consensus 220 ~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k----------------------- 276 (435)
T KOG2484|consen 220 SNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRK----------------------- 276 (435)
T ss_pred ccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhc-----------------------
Confidence 22222222 1 1479999999999999999999743
Q ss_pred ccccccccccCCCCceeeeEEEEecCCCcEEEecCCCCCCCCChhh
Q 023887 207 QRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVT 252 (276)
Q Consensus 207 ~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~~~ 252 (276)
.+.+...+| .|+..+.+.++.+.-|+|.||+--+..+..+
T Consensus 277 --~C~vg~~pG----vT~smqeV~Ldk~i~llDsPgiv~~~~~~~~ 316 (435)
T KOG2484|consen 277 --ACNVGNVPG----VTRSMQEVKLDKKIRLLDSPGIVPPSIDEKD 316 (435)
T ss_pred --cccCCCCcc----chhhhhheeccCCceeccCCceeecCCCccc
Confidence 455544556 8999999999999999999999766665544
No 33
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.4e-17 Score=144.38 Aligned_cols=120 Identities=24% Similarity=0.277 Sum_probs=102.4
Q ss_pred ceeEEEecCCcc----chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVESKL----GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~~~----~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
.+.+.+.|..+. .++++++.+ +|++++++|+||+|||||.++|+|.. +|++|+|.++|.+...
T Consensus 6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~------------~p~~G~I~~~G~~~~~ 73 (252)
T COG1124 6 VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE------------KPSSGSILLDGKPLAP 73 (252)
T ss_pred EeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc------------CCCCceEEECCcccCc
Confidence 356677777777 889999887 99999999999999999999999977 9999999999987654
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
- ++.+...+.+++++|++..
T Consensus 74 ~----~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QR 149 (252)
T COG1124 74 K----KRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQR 149 (252)
T ss_pred c----ccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHH
Confidence 3 2223467899999998643
Q ss_pred -------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 -------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 -------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. .||...+.++.++|.++++. + +|++|||+
T Consensus 150 iaIARAL~~~PklLIlDEptS---aLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl 202 (252)
T COG1124 150 IAIARALIPEPKLLILDEPTS---ALDVSVQAQILNLLLELKKERGLTYLFISHDL 202 (252)
T ss_pred HHHHHHhccCCCEEEecCchh---hhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH
Confidence 69999999 99998999999999999985 4 99999996
No 34
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.70 E-value=3.8e-17 Score=151.26 Aligned_cols=120 Identities=20% Similarity=0.292 Sum_probs=99.0
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 9 ~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~------------~p~~G~v~i~G~~~~~~~~ 76 (306)
T PRK13537 9 DFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT------------HPDAGSISLCGEPVPSRAR 76 (306)
T ss_pred EEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEecccchH
Confidence 3567788888778899999998 89999999999999999999999966 8999999999987654221
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
. ..+.++++++....
T Consensus 77 ~------~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 150 (306)
T PRK13537 77 H------ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLA 150 (306)
T ss_pred H------HHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHH
Confidence 1 23456666655322
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|||.. ++|......+.+.+.++.+.| +|++||+++
T Consensus 151 ~aL~~~P~lllLDEPt~---gLD~~~~~~l~~~l~~l~~~g~till~sH~l~ 199 (306)
T PRK13537 151 RALVNDPDVLVLDEPTT---GLDPQARHLMWERLRSLLARGKTILLTTHFME 199 (306)
T ss_pred HHHhCCCCEEEEeCCCc---CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 79999999 999999999999999998766 999999873
No 35
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=4.8e-17 Score=138.80 Aligned_cols=121 Identities=20% Similarity=0.301 Sum_probs=94.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++......
T Consensus 3 ~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 3 LKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE------------EPDSGSILIDGEDLTDLEDE 70 (178)
T ss_pred EEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccchh
Confidence 345667776667888998887 89999999999999999999999955 89999999999876543200
Q ss_pred cCCCCceeeeEEEEecCC----------------------------------CcEEEecCCCCCCCCChhhHHHHHHHHH
Q 023887 216 SGRGKHTTRHVSLLPLSG----------------------------------GGYLADTPGFNQPSLLKVTKQSLAQTFP 261 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~----------------------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ 261 (276)
. ....+.+.++++.. ..+++|||.. ++|......+.+.+.
T Consensus 71 ~---~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~---~LD~~~~~~l~~~l~ 144 (178)
T cd03229 71 L---PPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTS---ALDPITRREVRALLK 144 (178)
T ss_pred H---HHHhhcEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcc---cCCHHHHHHHHHHHH
Confidence 0 01223444444432 1179999999 999999999999999
Q ss_pred HHhhc-c--eEEEeeeC
Q 023887 262 EVCAV-G--LLYMIHML 275 (276)
Q Consensus 262 ei~~~-~--ii~~~H~~ 275 (276)
++++. + ++++||++
T Consensus 145 ~~~~~~~~tiii~sH~~ 161 (178)
T cd03229 145 SLQAQLGITVVLVTHDL 161 (178)
T ss_pred HHHHhcCCEEEEEeCCH
Confidence 99876 4 89999985
No 36
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.69 E-value=7.3e-17 Score=142.68 Aligned_cols=120 Identities=16% Similarity=0.219 Sum_probs=92.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV------------KPDSGKILLDGQDITKLPMH 70 (232)
T ss_pred EEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEecccCCHh
Confidence 356677777667899999988 89999999999999999999999965 89999999999876433211
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
.. ....++++++....
T Consensus 71 ~~----~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 71 KR----ARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred HH----HhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 00 01123333332110
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 147 al~~~p~llllDEPt~---~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~ 193 (232)
T cd03218 147 ALATNPKFLLLDEPFA---GVDPIAVQDIQKIIKILKDRGIGVLITDHNV 193 (232)
T ss_pred HHhcCCCEEEecCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 79999999 999999999999999998765 89999986
No 37
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=7.5e-17 Score=140.95 Aligned_cols=117 Identities=22% Similarity=0.298 Sum_probs=91.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|+++...+.
T Consensus 3 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~- 69 (213)
T cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE------------RPDSGEILIDGRDVTGVPP- 69 (213)
T ss_pred eeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEcCcCch-
Confidence 345667776667889999888 89999999999999999999999965 8999999999986643211
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
....++++++...
T Consensus 70 ------~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~ 143 (213)
T cd03259 70 ------ERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALAR 143 (213)
T ss_pred ------hhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHH
Confidence 1122333333210
Q ss_pred -------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 -------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 -------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+++|||.. ++|......+.+.+.++.+. + ++++||++
T Consensus 144 al~~~p~~lllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 191 (213)
T cd03259 144 ALAREPSLLLLDEPLS---ALDAKLREELREELKELQRELGITTIYVTHDQ 191 (213)
T ss_pred HHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 079999999 99999999999999999763 5 99999986
No 38
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=1.6e-17 Score=147.09 Aligned_cols=124 Identities=19% Similarity=0.314 Sum_probs=96.9
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+-+..+|+.-..++++++.+ +|++++++||||+|||||+|+|.| +|+|++|+|.++|+++...+++.
T Consensus 8 ~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG------------~~~P~~G~v~~~G~~it~l~p~~ 75 (250)
T COG0411 8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITG------------FYKPSSGTVIFRGRDITGLPPHR 75 (250)
T ss_pred ccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecc------------cccCCCceEEECCcccCCCCHHH
Confidence 45667777777889999988 899999999999999999999999 67999999999999988766543
Q ss_pred CCCCceeeeEEEEecCCCc-------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGGG------------------------------------------------------------- 235 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~~------------------------------------------------------------- 235 (276)
-......+.++.....+++
T Consensus 76 iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~q 155 (250)
T COG0411 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQ 155 (250)
T ss_pred HHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHh
Confidence 1111122222221111110
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||.. ++++.+.+++.+.+.++++. | ++++.|||+
T Consensus 156 R~LEIArALa~~P~lLLLDEPaA---Gln~~e~~~l~~~i~~i~~~~g~tillIEHdM~ 211 (250)
T COG0411 156 RRLEIARALATQPKLLLLDEPAA---GLNPEETEELAELIRELRDRGGVTILLIEHDMK 211 (250)
T ss_pred HHHHHHHHHhcCCCEEEecCccC---CCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH
Confidence 79999999 99999999999999999985 4 899999984
No 39
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=9.6e-17 Score=136.36 Aligned_cols=117 Identities=21% Similarity=0.302 Sum_probs=93.5
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+ .
T Consensus 4 ~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~~~-~- 69 (173)
T cd03230 4 RNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL------------KPDSGEIKVLGKDIKKEP-E- 69 (173)
T ss_pred EEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEcccch-H-
Confidence 44556665556788888887 89999999999999999999999965 899999999998765432 1
Q ss_pred CCCCceeeeEEEEecCCC--------------------------------cEEEecCCCCCCCCChhhHHHHHHHHHHHh
Q 023887 217 GRGKHTTRHVSLLPLSGG--------------------------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~--------------------------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~ 264 (276)
.....++++++... .+++|||.. ++|....+.+.+.+.++.
T Consensus 70 ----~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~---~LD~~~~~~l~~~l~~~~ 142 (173)
T cd03230 70 ----EVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTS---GLDPESRREFWELLRELK 142 (173)
T ss_pred ----hhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHH
Confidence 12234666665421 179999999 999999999999999998
Q ss_pred hcc--eEEEeeeC
Q 023887 265 AVG--LLYMIHML 275 (276)
Q Consensus 265 ~~~--ii~~~H~~ 275 (276)
+.| ++++||+.
T Consensus 143 ~~g~tiii~th~~ 155 (173)
T cd03230 143 KEGKTILLSSHIL 155 (173)
T ss_pred HCCCEEEEECCCH
Confidence 765 89999985
No 40
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.68 E-value=6.4e-17 Score=151.89 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=98.0
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+.++.+.++|++...++++++.+ +|++++|+|+||+||||||++|+|.. +|++|+|.++|.++....
T Consensus 42 i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~------------~p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT------------SPDAGKITVLGVPVPARA 109 (340)
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCceEEEECCEECCcch
Confidence 34567888888878899999998 89999999999999999999999965 899999999998764321
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
. ...+.++++++....
T Consensus 110 ~------~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~l 183 (340)
T PRK13536 110 R------LARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTL 183 (340)
T ss_pred H------HHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHH
Confidence 1 122345555443211
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|+|||.. ++|......+.+.+.++.+.| ++++||+++
T Consensus 184 A~aL~~~P~lLiLDEPt~---gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~ 233 (340)
T PRK13536 184 ARALINDPQLLILDEPTT---GLDPHARHLIWERLRSLLARGKTILLTTHFME 233 (340)
T ss_pred HHHHhcCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 79999999 999999999999999998766 999999873
No 41
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=7.8e-17 Score=142.98 Aligned_cols=122 Identities=22% Similarity=0.278 Sum_probs=91.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+|+|+|.. +|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL------------RPDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccChh
Confidence 345667777667889999888 89999999999999999999999965 89999999999765432210
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
. .+...+.++++++...
T Consensus 71 ~--~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia 148 (235)
T cd03261 71 E--LYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALA 148 (235)
T ss_pred h--HHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 0 0001112222222110
Q ss_pred --------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 --------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 --------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+. + ++++||++
T Consensus 149 ~al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~ 197 (235)
T cd03261 149 RALALDPELLLYDEPTA---GLDPIASGVIDDLIRSLKKELGLTSIMVTHDL 197 (235)
T ss_pred HHHhcCCCEEEecCCcc---cCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 079999999 99999999999999999863 5 99999986
No 42
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=3.3e-16 Score=149.26 Aligned_cols=171 Identities=26% Similarity=0.323 Sum_probs=127.4
Q ss_pred ecccccccccchhccccEEEEEEEcCC-CCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-ee
Q 023887 62 VFQRSTEILDPPVANVDHLLLLFSMDQ-PKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EP 139 (276)
Q Consensus 62 i~~R~~~~~r~~~anvD~vl~v~~~~~-p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~ 139 (276)
+.++...+.+.++..+|++++|+|.+. +...+..+.++| +..++|+++|+||+|-...+.. ...|+++|+ ++
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~L---r~~~kpviLvvNK~D~~~~e~~---~~efyslG~g~~ 142 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKIL---RRSKKPVILVVNKIDNLKAEEL---AYEFYSLGFGEP 142 (444)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH---HhcCCCEEEEEEcccCchhhhh---HHHHHhcCCCCc
Confidence 444445556678999999999999975 334444677777 4667999999999998744332 356888999 79
Q ss_pred EEEecCCccchHHHHhhc------------c----CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccccee
Q 023887 140 LFCSVESKLGLDSLLQRL------------R----DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l------------~----g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~ 203 (276)
+.+|+.++.++.+|...+ . .-.+||+|.||||||||+|+|+|..+.
T Consensus 143 ~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~------------------ 204 (444)
T COG1160 143 VPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERV------------------ 204 (444)
T ss_pred eEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceE------------------
Confidence 999999999988876653 1 257999999999999999999997642
Q ss_pred eccccccccccccCCCCceeeeEEEEecCC---CcEEEecCCCCCCCC--ChhhHHHHHHHHHHHhhcc
Q 023887 204 FEDQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYLADTPGFNQPSL--LKVTKQSLAQTFPEVCAVG 267 (276)
Q Consensus 204 ~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~---~~~iiDtPg~~~~~l--~~~~~~~l~~~f~ei~~~~ 267 (276)
-++..+| ||+..-..+... ...++||.|+|..+- +..+.-.+.++++.+....
T Consensus 205 -------Iv~~~aG----TTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~ 262 (444)
T COG1160 205 -------IVSDIAG----TTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERAD 262 (444)
T ss_pred -------EecCCCC----ccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcC
Confidence 2334456 888777666653 337999999987774 3345556777888887766
No 43
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.68 E-value=8.6e-17 Score=140.24 Aligned_cols=118 Identities=25% Similarity=0.365 Sum_probs=89.0
Q ss_pred eeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 138 EPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 138 ~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
+.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.
T Consensus 3 ~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 70 (211)
T cd03225 3 KNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL------------GPTSGEVLVDGKDLTKLSL 70 (211)
T ss_pred eeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEEcccCCH
Confidence 345666765 56788999887 89999999999999999999999965 8999999999876543210
Q ss_pred ccCCCCceeeeEEEEecCC-------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSG------------------------------------------------------------- 233 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~------------------------------------------------------------- 233 (276)
.. ....++++++..
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 145 (211)
T cd03225 71 KE-----LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAI 145 (211)
T ss_pred HH-----HHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence 00 011122222110
Q ss_pred --------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 --------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 --------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 146 aral~~~p~llllDEPt~---~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~ 194 (211)
T cd03225 146 AGVLAMDPDILLLDEPTA---GLDPAGRRELLELLKKLKAEGKTIIIVTHDL 194 (211)
T ss_pred HHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 0079999999 999999999999999998765 99999986
No 44
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.68 E-value=1e-16 Score=136.15 Aligned_cols=119 Identities=21% Similarity=0.274 Sum_probs=93.4
Q ss_pred ceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+ ...++++++.+ +|+.++|+|+||+|||||+++|+|.. +|++|+|.++|.++....
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~~~ 70 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL------------RPTSGRVRLDGADISQWD 70 (173)
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc------------CCCCCeEEECCEEcccCC
Confidence 3456666754 34688888887 89999999999999999999999965 899999999998775433
Q ss_pred cccCCCCceeeeEEEEecCC------------------------------CcEEEecCCCCCCCCChhhHHHHHHHHHHH
Q 023887 214 TKSGRGKHTTRHVSLLPLSG------------------------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEV 263 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~------------------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei 263 (276)
... ....++++++.. ..+|+|||.. ++|......+.+.+.++
T Consensus 71 ~~~-----~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~---~LD~~~~~~l~~~l~~~ 142 (173)
T cd03246 71 PNE-----LGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNS---HLDVEGERALNQAIAAL 142 (173)
T ss_pred HHH-----HHhheEEECCCCccccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCcc---ccCHHHHHHHHHHHHHH
Confidence 211 223455555442 1289999999 99999999999999999
Q ss_pred hhcc--eEEEeeeC
Q 023887 264 CAVG--LLYMIHML 275 (276)
Q Consensus 264 ~~~~--ii~~~H~~ 275 (276)
.+++ +|++||++
T Consensus 143 ~~~~~tii~~sh~~ 156 (173)
T cd03246 143 KAAGATRIVIAHRP 156 (173)
T ss_pred HhCCCEEEEEeCCH
Confidence 8765 99999986
No 45
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.67 E-value=1.2e-16 Score=140.03 Aligned_cols=124 Identities=24% Similarity=0.306 Sum_probs=91.8
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~ 70 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD------------RPTSGEVRVDGTDISK 70 (218)
T ss_pred EeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc------------CCCceeEEECCEehhh
Confidence 3456677765 56789999888 89999999999999999999999965 8999999999987654
Q ss_pred cccccCCCCceeeeEEEEecCCC---------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGG--------------------------------------------------------- 234 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~--------------------------------------------------------- 234 (276)
.+.... .+...+.++++++...
T Consensus 71 ~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 71 LSEKEL-AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred cchhHH-HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHH
Confidence 321000 0000112333332210
Q ss_pred -----------cEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeCC
Q 023887 235 -----------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHMLH 276 (276)
Q Consensus 235 -----------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~~ 276 (276)
.+|+|||.. ++|....+.+.+.+.++.+ .+ +|++||+++
T Consensus 150 ~la~al~~~p~lllLDEP~~---~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 202 (218)
T cd03255 150 AIARALANDPKIILADEPTG---NLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202 (218)
T ss_pred HHHHHHccCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 079999999 9999999999999999987 45 999999863
No 46
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.67 E-value=1.4e-16 Score=138.62 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=88.9
Q ss_pred eeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 138 EPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 138 ~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
+.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++....
T Consensus 3 ~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~-- 68 (205)
T cd03226 3 ENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI------------KESSGSILLNGKPIKAKE-- 68 (205)
T ss_pred ccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEhhhHH--
Confidence 345667765 56788898887 89999999999999999999999965 899999999997653200
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
..+.++++++.+
T Consensus 69 ------~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 142 (205)
T cd03226 69 ------RRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALL 142 (205)
T ss_pred ------hhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHH
Confidence 111222222221
Q ss_pred ---CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 ---GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ---~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 143 ~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 186 (205)
T cd03226 143 SGKDLLIFDEPTS---GLDYKNMERVGELIRELAAQGKAVIVITHDY 186 (205)
T ss_pred hCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 0079999999 999999999999999997665 99999986
No 47
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.67 E-value=9.6e-17 Score=147.83 Aligned_cols=118 Identities=20% Similarity=0.302 Sum_probs=96.2
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
...+...|+ ....++++++.+ +|++++|+|+||||||||||+|+|.. .|++|+|.++|.+...-..
T Consensus 7 ~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~------------~p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 7 VRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL------------KPTSGEILVLGYDVVKEPA 74 (293)
T ss_pred ecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEEcCEeCccCHH
Confidence 457788898 688999999998 79999999999999999999999976 8999999999976543110
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
...+.++++++.+..
T Consensus 75 ------~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia 148 (293)
T COG1131 75 ------KVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIA 148 (293)
T ss_pred ------HHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHH
Confidence 022334444443211
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc---eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG---LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~---ii~~~H~~ 275 (276)
+++|||+. +||+....++.+.+.++.+.+ |+++||.+
T Consensus 149 ~aL~~~P~lliLDEPt~---GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l 197 (293)
T COG1131 149 LALLHDPELLILDEPTS---GLDPESRREIWELLRELAKEGGVTILLSTHIL 197 (293)
T ss_pred HHHhcCCCEEEECCCCc---CCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH
Confidence 79999999 999999999999999999975 89999986
No 48
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.67 E-value=1.3e-16 Score=139.43 Aligned_cols=122 Identities=17% Similarity=0.231 Sum_probs=91.1
Q ss_pred ceeEEEec-CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++| .+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 4 ~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~~~~ 71 (214)
T TIGR02673 4 FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL------------TPSRGQVRIAGEDVNRLRG 71 (214)
T ss_pred EEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEcccCCH
Confidence 34566677 3456789999888 89999999999999999999999965 8999999999987643221
Q ss_pred ccCCCCceeeeEEEEecCCC------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGG------------------------------------------------------------ 234 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~------------------------------------------------------------ 234 (276)
... ....+.++++++...
T Consensus 72 ~~~--~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 72 RQL--PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIA 149 (214)
T ss_pred HHH--HHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 000 001122333332210
Q ss_pred --------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 --------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 --------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|......+.+.+.++.+.+ ++++||++
T Consensus 150 ~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 197 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTG---NLDPDLSERILDLLKRLNKRGTTVIVATHDL 197 (214)
T ss_pred HHHhCCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 079999999 999999999999999997665 99999986
No 49
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.67 E-value=1.3e-16 Score=139.71 Aligned_cols=118 Identities=21% Similarity=0.321 Sum_probs=92.5
Q ss_pred ceeEEEecCCc----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.+. ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~ 71 (218)
T cd03266 4 ADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL------------EPDAGFATVDGFDVVK 71 (218)
T ss_pred EEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCCceEEECCEEccc
Confidence 35567777654 6889999888 89999999999999999999999965 8999999999987643
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
... ...+.++++++....
T Consensus 72 ~~~------~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 145 (218)
T cd03266 72 EPA------EARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKV 145 (218)
T ss_pred CHH------HHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHH
Confidence 110 012234444433211
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 146 ~laral~~~p~illlDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 196 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTT---GLDVMATRALREFIRQLRALGKCILFSTHIM 196 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCc---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 79999999 999999999999999997665 99999986
No 50
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.67 E-value=1.6e-16 Score=138.11 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=94.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|.++|.++......
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~----------~~~p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 3 IKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHP----------KYEVTEGEILFKGEDITDLPPE 72 (200)
T ss_pred EEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCC----------cCCCCccEEEECCEECCcCCHH
Confidence 345667777667889999888 89999999999999999999999963 1379999999999877654321
Q ss_pred cCCCCceeeeEEEEecCC-------------------------------------CcEEEecCCCCCCCCChhhHHHHHH
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------GGYLADTPGFNQPSLLKVTKQSLAQ 258 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------~~~iiDtPg~~~~~l~~~~~~~l~~ 258 (276)
.. ....+.++++.. ..+++|+|.. ++|....+.+.+
T Consensus 73 ~~----~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~---~LD~~~~~~l~~ 145 (200)
T cd03217 73 ER----ARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDS---GLDIDALRLVAE 145 (200)
T ss_pred HH----hhCcEEEeecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc---cCCHHHHHHHHH
Confidence 10 112344444432 1179999999 999999999999
Q ss_pred HHHHHhhcc--eEEEeeeC
Q 023887 259 TFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 259 ~f~ei~~~~--ii~~~H~~ 275 (276)
.+.++.+.+ ++++||++
T Consensus 146 ~L~~~~~~~~tiii~sh~~ 164 (200)
T cd03217 146 VINKLREEGKSVLIITHYQ 164 (200)
T ss_pred HHHHHHHCCCEEEEEecCH
Confidence 999997655 89999986
No 51
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.7e-16 Score=139.55 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=91.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 3 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL------------KPTSGRATVAGHDVVREPRE 70 (220)
T ss_pred EEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEecCcChHH
Confidence 345667777667889999888 89999999999999999999999965 89999999998765321100
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+.++++++....
T Consensus 71 ------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~ 144 (220)
T cd03265 71 ------VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIAR 144 (220)
T ss_pred ------HhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHH
Confidence 11223333332110
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+. + ++++||++
T Consensus 145 al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~ 192 (220)
T cd03265 145 SLVHRPEVLFLDEPTI---GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM 192 (220)
T ss_pred HHhcCCCEEEEcCCcc---CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 99999999999999999875 5 89999986
No 52
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.67 E-value=1.1e-16 Score=140.43 Aligned_cols=120 Identities=17% Similarity=0.233 Sum_probs=90.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 3 VENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL------------PPRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred EeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEcCCCCHH
Confidence 345666776666788888887 89999999999999999999999965 89999999999765432211
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
.. ..+.++++++...
T Consensus 71 ~~----~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 71 ER----ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred HH----HhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHH
Confidence 00 0112233322210
Q ss_pred ------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 ------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 ------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 147 l~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 192 (222)
T cd03224 147 LMSRPKLLLLDEPSE---GLAPKIVEEIFEAIRELRDEGVTILLVEQNA 192 (222)
T ss_pred HhcCCCEEEECCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 079999999 999999999999999998655 99999986
No 53
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.67 E-value=2e-16 Score=138.10 Aligned_cols=117 Identities=21% Similarity=0.327 Sum_probs=92.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~v~~~g~~~~~~~~~ 70 (213)
T cd03301 3 LENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE------------EPTSGRIYIGGRDVTDLPPK 70 (213)
T ss_pred EEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCCcc
Confidence 345667777667889999887 89999999999999999999999965 89999999999876432211
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
...++++++....
T Consensus 71 -------~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~lar 143 (213)
T cd03301 71 -------DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGR 143 (213)
T ss_pred -------cceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHH
Confidence 1234444433210
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 144 al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~ 191 (213)
T cd03301 144 AIVREPKVFLMDEPLS---NLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ 191 (213)
T ss_pred HHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 79999999 99999999999999999864 5 99999986
No 54
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.67 E-value=1.2e-16 Score=139.99 Aligned_cols=122 Identities=22% Similarity=0.320 Sum_probs=91.2
Q ss_pred ceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+
T Consensus 4 ~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~ 71 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE------------KPTRGKIRFNGQDLTRLR 71 (216)
T ss_pred EEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEehhhcC
Confidence 3556677753 34788999888 89999999999999999999999965 899999999998764322
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
...- ....+.++++++....
T Consensus 72 ~~~~--~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 72 GREI--PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred hhHH--HHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 1000 0011223333332100
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 150 aral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 198 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTG---NLDPELSRDIMRLFEEFNRRGTTVLVATHDI 198 (216)
T ss_pred HHHHhcCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 79999999 999999999999999997665 99999986
No 55
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.67 E-value=1.9e-16 Score=138.20 Aligned_cols=121 Identities=19% Similarity=0.248 Sum_probs=90.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++......
T Consensus 3 ~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03262 3 IKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE------------EPDSGTIIIDGLKLTDDKKN 70 (213)
T ss_pred EEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCccchh
Confidence 355677777667889999888 89999999999999999999999965 89999999999765310000
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
.+...+.++++++..
T Consensus 71 ---~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 147 (213)
T cd03262 71 ---INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIA 147 (213)
T ss_pred ---HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHH
Confidence 000011122222110
Q ss_pred -------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 -------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 -------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 148 ~al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~ 195 (213)
T cd03262 148 RALAMNPKVMLFDEPTS---ALDPELVGEVLDVMKDLAEEGMTMVVVTHEM 195 (213)
T ss_pred HHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 0179999999 999999999999999998765 89999986
No 56
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.67 E-value=1.6e-16 Score=146.72 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=93.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 7 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~- 73 (303)
T TIGR01288 7 LVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI------------SPDRGKITVLGEPVPSRAR- 73 (303)
T ss_pred EEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECcccHH-
Confidence 456777887777899999998 89999999999999999999999965 8999999999876532110
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
.....++++++...
T Consensus 74 -----~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 74 -----LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred -----HHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHH
Confidence 01122333333211
Q ss_pred -------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 -------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 -------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+.| +|++||++
T Consensus 149 al~~~p~lllLDEPt~---gLD~~~~~~l~~~l~~~~~~g~til~~sH~~ 195 (303)
T TIGR01288 149 ALINDPQLLILDEPTT---GLDPHARHLIWERLRSLLARGKTILLTTHFM 195 (303)
T ss_pred HHhcCCCEEEEeCCCc---CCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 079999999 999999999999999998766 99999986
No 57
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.66 E-value=1.6e-16 Score=138.30 Aligned_cols=116 Identities=20% Similarity=0.248 Sum_probs=91.5
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.... .
T Consensus 4 ~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~-~- 69 (208)
T cd03268 4 NDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI------------KPDSGEITFDGKSYQKNI-E- 69 (208)
T ss_pred EEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCCcccchH-H-
Confidence 45667776667899999887 89999999999999999999999965 899999999998654320 0
Q ss_pred CCCCceeeeEEEEecCCCc-------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGGG------------------------------------------------------------- 235 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~~------------------------------------------------------------- 235 (276)
..+.++++++....
T Consensus 70 -----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 70 -----ALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred -----HHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 11223333332110
Q ss_pred ---EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ---YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ---~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 145 p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 186 (208)
T cd03268 145 PDLLILDEPTN---GLDPDGIKELRELILSLRDQGITVLISSHLL 186 (208)
T ss_pred CCEEEECCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 79999999 999999999999999998765 89999986
No 58
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.2e-16 Score=141.07 Aligned_cols=120 Identities=20% Similarity=0.308 Sum_probs=100.4
Q ss_pred ceeEEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc-cc
Q 023887 137 YEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-VS 213 (276)
Q Consensus 137 ~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~-vs 213 (276)
++.+.++|.+. ..++++++.+ +|+.++++|+||+|||||+++|.|.. +|++|+|.++|.++.. .+
T Consensus 6 ~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl------------~p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 6 AENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL------------KPTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred EEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC------------cCCCCEEEECCeeccchhh
Confidence 45677778765 7888999888 79999999999999999999999976 9999999999988763 11
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
.. ..++.+++++|.+..
T Consensus 74 ~~-----~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRva 148 (235)
T COG1122 74 LL-----ELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVA 148 (235)
T ss_pred HH-----HhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHH
Confidence 11 155677888886522
Q ss_pred -----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||+. ++|....+++.+.+.++.+. + +|++|||++
T Consensus 149 IA~vLa~~P~iliLDEPta---~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~ 200 (235)
T COG1122 149 IAGVLAMGPEILLLDEPTA---GLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE 200 (235)
T ss_pred hhHHHHcCCCEEEEcCCCC---CCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH
Confidence 79999999 99999999999999999988 3 999999974
No 59
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=7e-17 Score=142.53 Aligned_cols=124 Identities=20% Similarity=0.321 Sum_probs=106.4
Q ss_pred CceeEEEec-CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 136 GYEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 136 ~~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
.++.+...| ++..+++++++.+ +|+.++++|+||+||||||++|.|.. +|++|+|.++|.++....
T Consensus 5 ~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~------------d~t~G~i~~~g~~i~~~~ 72 (258)
T COG3638 5 EVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV------------DPTSGEILFNGVQITKLK 72 (258)
T ss_pred EEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc------------CCCcceEEecccchhccc
Confidence 356778888 7788999999998 89999999999999999999999955 999999999998877665
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
.+. -+..+++++|++|.+++
T Consensus 73 ~k~--lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSG 150 (258)
T COG3638 73 GKE--LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSG 150 (258)
T ss_pred hHH--HHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCc
Confidence 322 23467899999998765
Q ss_pred ------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
++.|||-. +||+.+.+.+.+.+.++.++ | +++..|+++
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPva---sLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVA---SLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCccc---ccChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 69999999 99999999999999999985 5 899999864
No 60
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.66 E-value=2e-16 Score=139.75 Aligned_cols=120 Identities=17% Similarity=0.246 Sum_probs=92.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 3 VSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL------------PVKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred EEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCEECCCCCHH
Confidence 345667777667899999988 89999999999999999999999965 89999999998776433211
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
.. ..+.++++++....
T Consensus 71 ~~----~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al 146 (230)
T TIGR03410 71 ER----ARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARAL 146 (230)
T ss_pred HH----HHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHH
Confidence 00 11233343332211
Q ss_pred ------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 147 ~~~p~illlDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 192 (230)
T TIGR03410 147 VTRPKLLLLDEPTE---GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL 192 (230)
T ss_pred hcCCCEEEecCCcc---cCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence 79999999 99999999999999999874 4 89999986
No 61
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=2.6e-16 Score=133.41 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=91.2
Q ss_pred eeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 138 EPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 138 ~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
+.+.+.|.+. ..++++++.+ +|++++++|+||+|||||+++|+|.. +|++|+++++|.++...+.
T Consensus 4 ~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~------------~~~~G~i~~~g~~~~~~~~ 71 (171)
T cd03228 4 KNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY------------DPTSGEILIDGVDLRDLDL 71 (171)
T ss_pred EEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCCEEEECCEEhhhcCH
Confidence 4556666554 5788888887 89999999999999999999999965 8999999999987654321
Q ss_pred ccCCCCceeeeEEEEecC------------------------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHh
Q 023887 215 KSGRGKHTTRHVSLLPLS------------------------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC 264 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~------------------------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~ 264 (276)
.. ..+.+.++++. +..+++|||.. ++|....+.+.+.+.++.
T Consensus 72 ~~-----~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~---gLD~~~~~~l~~~l~~~~ 143 (171)
T cd03228 72 ES-----LRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATS---ALDPETEALILEALRALA 143 (171)
T ss_pred HH-----HHhhEEEEcCCchhccchHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCc---CCCHHHHHHHHHHHHHhc
Confidence 11 12234444332 12389999999 999999999999999986
Q ss_pred hcc-eEEEeeeC
Q 023887 265 AVG-LLYMIHML 275 (276)
Q Consensus 265 ~~~-ii~~~H~~ 275 (276)
+.. ++++||++
T Consensus 144 ~~~tii~~sh~~ 155 (171)
T cd03228 144 KGKTVIVIAHRL 155 (171)
T ss_pred CCCEEEEEecCH
Confidence 533 89999986
No 62
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.66 E-value=5.2e-17 Score=139.33 Aligned_cols=123 Identities=18% Similarity=0.124 Sum_probs=90.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
|+.+.++|++...+.+. +.+ +|++++|+|+||+|||||+|+|+|.. +|++|+|.++|..++-+...
T Consensus 3 ~~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~q~ 69 (177)
T cd03222 3 YPDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQL------------IPNGDNDEWDGITPVYKPQY 69 (177)
T ss_pred CCCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCC------------CCCCcEEEECCEEEEEEccc
Confidence 56677888777666664 455 89999999999999999999999965 89999999999765544322
Q ss_pred cCCCCceeee---EEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc--c-eEEEeeeC
Q 023887 216 SGRGKHTTRH---VSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV--G-LLYMIHML 275 (276)
Q Consensus 216 ~g~gk~tt~~---~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~--~-ii~~~H~~ 275 (276)
........+. ...+..++..+++|||.. ++|....+.+.+.+.++.+. . ++++||++
T Consensus 70 ~~LSgGq~qrv~laral~~~p~lllLDEPts---~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSA---YLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 1100001111 112222456799999999 99999999999999998764 2 89999986
No 63
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.66 E-value=1.6e-16 Score=148.91 Aligned_cols=118 Identities=19% Similarity=0.312 Sum_probs=102.7
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+..+|++...++++++.+ +|+.++|+|||||||||||++|+|.. .|++|+|.++|+++..+++
T Consensus 7 ~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe------------~p~~G~I~l~G~~i~~lpp 74 (352)
T COG3842 7 EIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE------------QPSSGEILLDGEDITDVPP 74 (352)
T ss_pred EEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCCh
Confidence 3567889999888999999998 89999999999999999999999955 9999999999999999875
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+.+++|+..+
T Consensus 75 -------~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 75 -------EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVAL 147 (352)
T ss_pred -------hhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHH
Confidence 45678888886533
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. .||..-++++...+.++.+. | .|++|||-
T Consensus 148 ARAL~~~P~vLLLDEPlS---aLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 148 ARALVPEPKVLLLDEPLS---ALDAKLREQMRKELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred HHHhhcCcchhhhcCccc---chhHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 69999999 89988888888888888875 6 89999984
No 64
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=4e-16 Score=137.14 Aligned_cols=114 Identities=19% Similarity=0.286 Sum_probs=88.4
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++..
T Consensus 3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~ 70 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE------------RPTSGEVLVDGEPVTG 70 (220)
T ss_pred EEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECcc
Confidence 3456677765 56789999888 89999999999999999999999965 8999999999876532
Q ss_pred cccccCCCCceeeeEEEEecCC----------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSG---------------------------------------------------------- 233 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~---------------------------------------------------------- 233 (276)
.. ..++++++..
T Consensus 71 ~~----------~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl 140 (220)
T cd03293 71 PG----------PDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRV 140 (220)
T ss_pred cc----------CcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHH
Confidence 11 1122222110
Q ss_pred ----------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 ----------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 ----------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+. + ++++||++
T Consensus 141 ~la~al~~~p~lllLDEPt~---~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~ 192 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFS---ALDALTREQLQEELLDIWRETGKTVLLVTHDI 192 (220)
T ss_pred HHHHHHHcCCCEEEECCCCC---CCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 0179999999 99999999999999998653 4 89999986
No 65
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.65 E-value=5.4e-16 Score=134.80 Aligned_cols=118 Identities=21% Similarity=0.341 Sum_probs=91.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.....
T Consensus 3 i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~- 69 (201)
T cd03231 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS------------PPLAGRVLLNGGPLDFQRD- 69 (201)
T ss_pred EEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEecccccH-
Confidence 355677777667889999887 89999999999999999999999965 8999999999877542211
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
...+.++++++....
T Consensus 70 -----~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 70 -----SIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred -----HhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 011223333322100
Q ss_pred --EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 --YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 --~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.+ +|++||+.
T Consensus 145 ~llllDEPt~---~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 185 (201)
T cd03231 145 PLWILDEPTT---ALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185 (201)
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 79999999 999999999999999987765 89999974
No 66
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.65 E-value=4.1e-16 Score=135.75 Aligned_cols=119 Identities=18% Similarity=0.260 Sum_probs=90.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~v~~~g~~~~~~~~~ 71 (204)
T PRK13538 4 ARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA------------RPDAGEVLWQGEPIRRQRDE 71 (204)
T ss_pred EEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEEcccchHH
Confidence 345667776667889999988 89999999999999999999999965 89999999999775432110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
..+.++++++..
T Consensus 72 ------~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~ 145 (204)
T PRK13538 72 ------YHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWL 145 (204)
T ss_pred ------hhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHh
Confidence 011122221110
Q ss_pred ---CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 ---GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 ---~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+++|||.. ++|....+.+.+.+.++.+.+ ++++||+++
T Consensus 146 ~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 146 TRAPLWILDEPFT---AIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred cCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 0179999999 999999999999999997665 999999863
No 67
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.65 E-value=1.9e-16 Score=151.60 Aligned_cols=120 Identities=23% Similarity=0.299 Sum_probs=94.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||+||||||++|+|.. +|++|+|.++|.++...+..
T Consensus 6 ~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll------------~p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 6 VSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL------------TPTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred EeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC------------CCCCcEEEECCEEcCcCCHH
Confidence 466778888878899999998 89999999999999999999999966 89999999999876543211
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
. ..+.++++++..
T Consensus 74 ~-----~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 74 A-----ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRV 148 (402)
T ss_pred H-----HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 1 112222222210
Q ss_pred ----------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 ----------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 ----------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+++|||.. +||...+.++.+.+.++.+.+ +|++||+++
T Consensus 149 ~IArAL~~~P~iLLLDEPts---gLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~ 200 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTA---SLDINHQVRTLELVRRLVDDGKTAVAAIHDLD 200 (402)
T ss_pred HHHHHHHcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 0079999999 999999999999999998765 899999864
No 68
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.65 E-value=4.8e-16 Score=145.29 Aligned_cols=148 Identities=27% Similarity=0.340 Sum_probs=117.2
Q ss_pred chhccccEEEEEEEcCCC-CCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeE------EEec
Q 023887 72 PPVANVDHLLLLFSMDQP-KLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPL------FCSV 144 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p-~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~------~~s~ 144 (276)
..+..+|+++.|+|+++| ...+..+++||.. +...+..+.|+||+||+|......|...+.+. |+.+ .-+|
T Consensus 209 KViDSSDVvvqVlDARDPmGTrc~~ve~ylkk-e~phKHli~vLNKvDLVPtwvt~~Wv~~lSke-yPTiAfHAsi~nsf 286 (572)
T KOG2423|consen 209 KVIDSSDVVVQVLDARDPMGTRCKHVEEYLKK-EKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKE-YPTIAFHASINNSF 286 (572)
T ss_pred HhhcccceeEEeeeccCCcccccHHHHHHHhh-cCCcceeEEEeeccccccHHHHHHHHHHHhhh-CcceeeehhhcCcc
Confidence 478999999999999999 5778899999965 56688999999999999999999999887653 3332 2234
Q ss_pred CCccchHHHHhh--c----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCC
Q 023887 145 ESKLGLDSLLQR--L----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (276)
Q Consensus 145 ~~~~~l~~l~~~--l----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~ 218 (276)
+++..++-|... + +...++|||.||+||||+||+|.. ++++.+.+-+|
T Consensus 287 GKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~-------------------------KkVCkvAPIpG- 340 (572)
T KOG2423|consen 287 GKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRK-------------------------KKVCKVAPIPG- 340 (572)
T ss_pred chhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhh-------------------------cccccccCCCC-
Confidence 444444444432 2 345799999999999999999997 56788877777
Q ss_pred CCceeeeEEEEecCCCcEEEecCCCCCCCCCh
Q 023887 219 GKHTTRHVSLLPLSGGGYLADTPGFNQPSLLK 250 (276)
Q Consensus 219 gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~ 250 (276)
-|.--+|+.+..+.+|||+||+..|+-|.
T Consensus 341 ---ETKVWQYItLmkrIfLIDcPGvVyps~ds 369 (572)
T KOG2423|consen 341 ---ETKVWQYITLMKRIFLIDCPGVVYPSSDS 369 (572)
T ss_pred ---cchHHHHHHHHhceeEecCCCccCCCCCc
Confidence 77777888888899999999998777654
No 69
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=2.8e-16 Score=137.08 Aligned_cols=114 Identities=19% Similarity=0.283 Sum_probs=88.2
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...
T Consensus 4 ~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~---- 67 (210)
T cd03269 4 ENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII------------LPDSGEVLFDGKPLDIA---- 67 (210)
T ss_pred EEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCCchhHH----
Confidence 45666676666788888887 89999999999999999999999965 89999999998765320
Q ss_pred CCCCceeeeEEEEecCC---------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSG--------------------------------------------------------------- 233 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~--------------------------------------------------------------- 233 (276)
....++++++..
T Consensus 68 -----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 68 -----ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred -----HHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHH
Confidence 001122222110
Q ss_pred -----CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 -----GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 -----~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 143 l~~~p~~lllDEP~~---~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~ 188 (210)
T cd03269 143 VIHDPELLILDEPFS---GLDPVNVELLKDVIRELARAGKTVILSTHQM 188 (210)
T ss_pred HhcCCCEEEEeCCCc---CCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 0179999999 999999999999999987655 99999985
No 70
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=2.5e-16 Score=139.50 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=91.3
Q ss_pred ceeEEEecCCc----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.+. ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~ 71 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE------------RPTSGSVLVDGTDLTL 71 (233)
T ss_pred EecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEccc
Confidence 34566677654 6889999888 89999999999999999999999965 8999999999987643
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+...- ....+.++++++....
T Consensus 72 ~~~~~~--~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 149 (233)
T cd03258 72 LSGKEL--RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRV 149 (233)
T ss_pred CCHHHH--HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHH
Confidence 211000 0011223333322110
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|......+.+.+.++.+. + +|++||++
T Consensus 150 ~la~al~~~p~lllLDEP~~---~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 201 (233)
T cd03258 150 GIARALANNPKVLLCDEATS---ALDPETTQSILALLRDINRELGLTIVLITHEM 201 (233)
T ss_pred HHHHHHhcCCCEEEecCCCC---cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 79999999 99999999999999999764 5 99999986
No 71
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.65 E-value=2.4e-16 Score=136.76 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=89.9
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..+.....
T Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~~~ 70 (206)
T TIGR03608 3 NISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE------------KFDSGQVYLNGKETPPLNSKKA 70 (206)
T ss_pred ceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEccccchhhH
Confidence 4556676667889999887 89999999999999999999999965 8999999999987532211000
Q ss_pred CCCceeeeEEEEecCCC---------------------------------------------------------------
Q 023887 218 RGKHTTRHVSLLPLSGG--------------------------------------------------------------- 234 (276)
Q Consensus 218 ~gk~tt~~~~~~~~~~~--------------------------------------------------------------- 234 (276)
.....+.++++++...
T Consensus 71 -~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral 149 (206)
T TIGR03608 71 -SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAI 149 (206)
T ss_pred -HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHH
Confidence 0001122333332210
Q ss_pred -----cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 -----GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 -----~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+|+|||.. ++|..+.+.+.+.+.++.+.+ ++++||++
T Consensus 150 ~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 194 (206)
T TIGR03608 150 LKDPPLILADEPTG---SLDPKNRDEVLDLLLELNDEGKTIIIVTHDP 194 (206)
T ss_pred HcCCCEEEEeCCcC---CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 079999999 999999999999999997655 89999986
No 72
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.9e-16 Score=153.22 Aligned_cols=119 Identities=26% Similarity=0.292 Sum_probs=103.7
Q ss_pred eeEEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 138 ~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
+.+.+.|.++ ..+.++++.+ +|+.++++|+||+|||||+|+|+|.. +|++|+|.+||.+..+++..
T Consensus 324 ~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~------------~~~~G~I~vng~~l~~l~~~ 391 (559)
T COG4988 324 ENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL------------APTQGEIRVNGIDLRDLSPE 391 (559)
T ss_pred cceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC------------CCCCceEEECCccccccCHH
Confidence 3677788776 7899999998 89999999999999999999999965 99999999999999888754
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
. ..+++++++|.+..
T Consensus 392 ~-----~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRla 466 (559)
T COG4988 392 A-----WRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLA 466 (559)
T ss_pred H-----HHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHH
Confidence 4 66778888776532
Q ss_pred -----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 -----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 -----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. ++++||.++
T Consensus 467 LARAll~~~~l~llDEpTA---~LD~etE~~i~~~l~~l~~~ktvl~itHrl~ 516 (559)
T COG4988 467 LARALLSPASLLLLDEPTA---HLDAETEQIILQALQELAKQKTVLVITHRLE 516 (559)
T ss_pred HHHHhcCCCCEEEecCCcc---CCCHhHHHHHHHHHHHHHhCCeEEEEEcChH
Confidence 79999999 999999999999999999877 999999864
No 73
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.65 E-value=2.4e-16 Score=155.42 Aligned_cols=120 Identities=23% Similarity=0.295 Sum_probs=101.3
Q ss_pred cCceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|.+ ...++++++.+ +|++++++|+||+|||||+|+|+| +|+|++|+|.++|.++.++
T Consensus 335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g------------~~~p~~G~I~i~g~~i~~~ 402 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTG------------LLDPLQGEVTLDGVSVSSL 402 (529)
T ss_pred EEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEEhhhH
Confidence 456778888865 35799999998 899999999999999999999999 5699999999999998877
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
... .+.++++++|++..
T Consensus 403 -~~~-----lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQr 476 (529)
T TIGR02868 403 -QDE-----LRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGER 476 (529)
T ss_pred -HHH-----HHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHH
Confidence 443 66778888887532
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.+..+.. +|++||.+
T Consensus 477 QRiaiARall~~~~iliLDE~TS---aLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 477 QRLALARALLADAPILLLDEPTE---HLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 79999999 999999999999888875443 99999975
No 74
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.65 E-value=4.1e-16 Score=135.34 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=91.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++......
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~v~~~g~~~~~~~~~ 71 (200)
T PRK13540 4 VIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL------------NPEKGEILFERQSIKKDLCT 71 (200)
T ss_pred EEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeeEEECCCccccCHHH
Confidence 355677777777899999988 89999999999999999999999965 89999999999765421100
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
..+.++++++...
T Consensus 72 ------~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~ 145 (200)
T PRK13540 72 ------YQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSK 145 (200)
T ss_pred ------HHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 1112222222110
Q ss_pred --cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 --GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 --~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++++.+ +|++||+.
T Consensus 146 p~~lilDEP~~---~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 187 (200)
T PRK13540 146 AKLWLLDEPLV---ALDELSLLTIITKIQEHRAKGGAVLLTSHQD 187 (200)
T ss_pred CCEEEEeCCCc---ccCHHHHHHHHHHHHHHHHcCCEEEEEeCCc
Confidence 079999999 999999999999999987665 99999986
No 75
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.65 E-value=1.8e-16 Score=146.30 Aligned_cols=112 Identities=19% Similarity=0.288 Sum_probs=87.0
Q ss_pred cCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCce
Q 023887 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (276)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~t 222 (276)
|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.. .
T Consensus 3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~------~ 64 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL------------RPTSGTARVAGYDVVREPRK------V 64 (302)
T ss_pred eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEcccCHHH------H
Confidence 44455788888887 89999999999999999999999965 89999999999765321100 1
Q ss_pred eeeEEEEecCCCc-------------------------------------------------------------------
Q 023887 223 TRHVSLLPLSGGG------------------------------------------------------------------- 235 (276)
Q Consensus 223 t~~~~~~~~~~~~------------------------------------------------------------------- 235 (276)
.+.++++++....
T Consensus 65 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 144 (302)
T TIGR01188 65 RRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPD 144 (302)
T ss_pred HhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 1223333332111
Q ss_pred -EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 -YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 -~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|||.. ++|....+.+.+.+.++.+.| +|++||+++
T Consensus 145 lllLDEPt~---gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~ 185 (302)
T TIGR01188 145 VLFLDEPTT---GLDPRTRRAIWDYIRALKEEGVTILLTTHYME 185 (302)
T ss_pred EEEEeCCCc---CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 79999999 999999999999999998766 999999863
No 76
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.65 E-value=2.8e-16 Score=137.18 Aligned_cols=122 Identities=19% Similarity=0.249 Sum_probs=91.1
Q ss_pred ceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.....
T Consensus 3 ~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~ 70 (214)
T cd03292 3 FINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE------------LPTSGTIRVNGQDVSDLRG 70 (214)
T ss_pred EEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcccCCH
Confidence 3456677754 46788888887 89999999999999999999999965 8999999999986643211
Q ss_pred ccCCCCceeeeEEEEecCCC------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGG------------------------------------------------------------ 234 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~------------------------------------------------------------ 234 (276)
..- ....+.++++++...
T Consensus 71 ~~~--~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 148 (214)
T cd03292 71 RAI--PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIA 148 (214)
T ss_pred HHH--HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHH
Confidence 000 001122333333211
Q ss_pred --------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 --------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 --------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 149 ral~~~p~llllDEPt~---~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~ 196 (214)
T cd03292 149 RAIVNSPTILIADEPTG---NLDPDTTWEIMNLLKKINKAGTTVVVATHAK 196 (214)
T ss_pred HHHHcCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 079999999 999999999999999997665 99999985
No 77
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3.5e-16 Score=147.79 Aligned_cols=117 Identities=20% Similarity=0.266 Sum_probs=97.2
Q ss_pred ceeEEEec-CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++| .+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...++
T Consensus 6 i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~------------~p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 6 LQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE------------RITSGEIWIGGRVVNELEP 73 (356)
T ss_pred EEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC------------CCCceEEEECCEECCCCCH
Confidence 45677777 5667889999988 89999999999999999999999966 8999999999998765432
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|+...
T Consensus 74 -------~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalA 146 (356)
T PRK11650 74 -------ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMG 146 (356)
T ss_pred -------HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHH
Confidence 12456666665321
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|...++.+.+.+.++.+. + +|++|||+
T Consensus 147 RAL~~~P~llLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 195 (356)
T PRK11650 147 RAIVREPAVFLFDEPLS---NLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ 195 (356)
T ss_pred HHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 99999999999999999875 5 99999986
No 78
>PRK10908 cell division protein FtsE; Provisional
Probab=99.64 E-value=3.5e-16 Score=137.66 Aligned_cols=121 Identities=21% Similarity=0.348 Sum_probs=90.1
Q ss_pred eeEEEec-CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 138 EPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 138 ~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
+.+.++| .....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++......
T Consensus 5 ~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 5 EHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE------------RPSAGKIWFSGHDITRLKNR 72 (222)
T ss_pred EeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEcccCChh
Confidence 4556666 4456788998887 89999999999999999999999955 89999999999766432210
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
.- +...+.++++++...
T Consensus 73 ~~--~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (222)
T PRK10908 73 EV--PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIAR 150 (222)
T ss_pred HH--HHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHH
Confidence 00 001122333332210
Q ss_pred -------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 -------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 -------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 151 al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (222)
T PRK10908 151 AVVNKPAVLLADEPTG---NLDDALSEGILRLFEEFNRVGVTVLMATHDI 197 (222)
T ss_pred HHHcCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 079999999 999999999999999997655 99999986
No 79
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=4.4e-16 Score=138.98 Aligned_cols=119 Identities=19% Similarity=0.293 Sum_probs=90.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 6 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 6 FKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI------------DPTEGSILIDGVDIKTIDVI 73 (241)
T ss_pred EEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEEhhhcChH
Confidence 456667776667889999888 89999999999999999999999965 89999999999775432110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
. .+..++++++..
T Consensus 74 ~-----~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 74 D-----LRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred H-----hhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 0 011122222211
Q ss_pred --CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 --GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 --~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+. | +|++||++
T Consensus 149 ~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~ 192 (241)
T PRK14250 149 NPEVLLLDEPTS---ALDPTSTEIIEELIVKLKNKMNLTVIWITHNM 192 (241)
T ss_pred CCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence 0179999999 99999999999999999764 5 99999986
No 80
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.64 E-value=1.3e-16 Score=141.58 Aligned_cols=116 Identities=20% Similarity=0.286 Sum_probs=98.1
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.++.+|++...++++++.+ +|++.+++|+||+||||.+++|+|.. +|++|+|.++|.++...
T Consensus 5 ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll------------e~~~G~I~~~g~~~~~~--- 69 (300)
T COG4152 5 IEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL------------EPTEGEITWNGGPLSQE--- 69 (300)
T ss_pred EecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC------------CccCceEEEcCcchhhh---
Confidence 456788899999999999998 89999999999999999999999976 99999999999876542
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
.+..++|+|-..++
T Consensus 70 ------~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfis 143 (300)
T COG4152 70 ------IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFIS 143 (300)
T ss_pred ------hhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHH
Confidence 22334444433222
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|+|+|.. +||++..+-|.+...++++.| ||++||.|.
T Consensus 144 aviHePeLlILDEPFS---GLDPVN~elLk~~I~~lk~~GatIifSsH~Me 191 (300)
T COG4152 144 AVIHEPELLILDEPFS---GLDPVNVELLKDAIFELKEEGATIIFSSHRME 191 (300)
T ss_pred HHhcCCCEEEecCCcc---CCChhhHHHHHHHHHHHHhcCCEEEEecchHH
Confidence 79999999 999999999999999999998 999999873
No 81
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3e-16 Score=142.86 Aligned_cols=120 Identities=21% Similarity=0.242 Sum_probs=93.8
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 7 ~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 7 VEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY------------LPQRGRVKVMGREVNAENE 74 (274)
T ss_pred EEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCceEEEECCEECCCCCH
Confidence 456777775 456789999887 89999999999999999999999965 8999999999987643221
Q ss_pred ccCCCCceeeeEEEEecCCC------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGG------------------------------------------------------------ 234 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~------------------------------------------------------------ 234 (276)
.. ....++++++.+.
T Consensus 75 ~~-----~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~l 149 (274)
T PRK13647 75 KW-----VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAI 149 (274)
T ss_pred HH-----HHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHH
Confidence 10 1223444444320
Q ss_pred ---------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 235 ---------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 235 ---------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+++|||.. ++|......+.+.+.++++.| ++++||+++
T Consensus 150 araL~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~ 199 (274)
T PRK13647 150 AGVLAMDPDVIVLDEPMA---YLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199 (274)
T ss_pred HHHHHcCCCEEEEECCCc---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 079999999 999999999999999998765 999999863
No 82
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.64 E-value=5.2e-16 Score=137.89 Aligned_cols=119 Identities=17% Similarity=0.273 Sum_probs=91.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 4 VAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY------------VAQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred EEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCEEcccCChh
Confidence 345666776667889999887 89999999999999999999999965 89999999999766432210
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+.++++++....
T Consensus 72 ------~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~lar 145 (236)
T TIGR03864 72 ------ALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIAR 145 (236)
T ss_pred ------hhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHH
Confidence 11123333332100
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeCC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHMLH 276 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~~ 276 (276)
+++|||.. ++|....+.+.+.+.++.+ .+ ++++||+++
T Consensus 146 al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 194 (236)
T TIGR03864 146 ALLHRPALLLLDEPTV---GLDPASRAAIVAHVRALCRDQGLSVLWATHLVD 194 (236)
T ss_pred HHhcCCCEEEEcCCcc---CCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 79999999 9999999999999999975 35 999999863
No 83
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.64 E-value=1.7e-16 Score=135.71 Aligned_cols=123 Identities=24% Similarity=0.319 Sum_probs=90.6
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc-
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK- 215 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~- 215 (276)
+.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++......
T Consensus 3 ~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~------------~~~~G~v~~~g~~~~~~~~~~ 70 (180)
T cd03214 3 ENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL------------KPSSGEILLDGKDLASLSPKE 70 (180)
T ss_pred eEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCcCCHHH
Confidence 44566676656788888887 89999999999999999999999965 89999999999876432210
Q ss_pred --------------cCCCCceeeeEEEEe--------------cCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-
Q 023887 216 --------------SGRGKHTTRHVSLLP--------------LSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV- 266 (276)
Q Consensus 216 --------------~g~gk~tt~~~~~~~--------------~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~- 266 (276)
.+......+....++ .++..+++|||.. ++|..+.+.+.+.+.++.++
T Consensus 71 ~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~---~LD~~~~~~~~~~l~~~~~~~ 147 (180)
T cd03214 71 LARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTS---HLDIAHQIELLELLRRLARER 147 (180)
T ss_pred HHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHHHhc
Confidence 011111111111111 1123389999999 99999999999999999875
Q ss_pred c--eEEEeeeC
Q 023887 267 G--LLYMIHML 275 (276)
Q Consensus 267 ~--ii~~~H~~ 275 (276)
+ +|++||++
T Consensus 148 ~~tiii~sh~~ 158 (180)
T cd03214 148 GKTVVMVLHDL 158 (180)
T ss_pred CCEEEEEeCCH
Confidence 4 89999986
No 84
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=4.2e-16 Score=135.99 Aligned_cols=117 Identities=22% Similarity=0.315 Sum_probs=89.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +| +++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+ .
T Consensus 3 ~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~-~ 68 (211)
T cd03264 3 LENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT------------PPSSGTIRIDGQDVLKQP-Q 68 (211)
T ss_pred EEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCCccccch-H
Confidence 345666776667899999988 78 99999999999999999999965 899999999997654321 0
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
...+.++++++....
T Consensus 69 -----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 143 (211)
T cd03264 69 -----KLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQ 143 (211)
T ss_pred -----HHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHH
Confidence 011223333322110
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 144 al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tii~vsH~~ 189 (211)
T cd03264 144 ALVGDPSILIVDEPTA---GLDPEERIRFRNLLSELGEDRIVILSTHIV 189 (211)
T ss_pred HHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 79999999 999999999999999997644 99999986
No 85
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=6.1e-16 Score=137.71 Aligned_cols=124 Identities=19% Similarity=0.267 Sum_probs=89.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc-
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST- 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~- 214 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 5 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~~ 72 (239)
T cd03296 5 VRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE------------RPDSGTILFGGEDATDVPVQ 72 (239)
T ss_pred EEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCCcc
Confidence 456777787777899999988 89999999999999999999999965 8999999999876532211
Q ss_pred ---------ccCCCCcee--eeEEE----Ee----------------------cC-------------------------
Q 023887 215 ---------KSGRGKHTT--RHVSL----LP----------------------LS------------------------- 232 (276)
Q Consensus 215 ---------~~g~gk~tt--~~~~~----~~----------------------~~------------------------- 232 (276)
.+..-.+.| ..+.+ .. +.
T Consensus 73 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 000000000 00000 00 00
Q ss_pred --CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 233 --GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 233 --~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+..+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 153 ~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 197 (239)
T cd03296 153 VEPKVLLLDEPFG---ALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ 197 (239)
T ss_pred cCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 00079999999 99999999999999999864 5 89999986
No 86
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3.9e-16 Score=142.16 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=92.8
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 71 (274)
T PRK13644 4 LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL------------RPQKGKVLVSGIDTGDFSK 71 (274)
T ss_pred EEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEECCcccc
Confidence 456677774 345889999888 89999999999999999999999965 8999999999987653321
Q ss_pred ccCCCCceeeeEEEEecCCC--c---------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGG--G--------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~--~--------------------------------------------------------- 235 (276)
.. .....++++++.+. .
T Consensus 72 ~~----~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 147 (274)
T PRK13644 72 LQ----GIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVAL 147 (274)
T ss_pred HH----HHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHH
Confidence 00 01223344333210 0
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|+|||.. ++|......+.+.+.++.+.| ++++||+++
T Consensus 148 aral~~~p~lllLDEPt~---gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~ 197 (274)
T PRK13644 148 AGILTMEPECLIFDEVTS---MLDPDSGIAVLERIKKLHEKGKTIVYITHNLE 197 (274)
T ss_pred HHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 79999999 999999999999999998766 999999863
No 87
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3.9e-16 Score=138.66 Aligned_cols=120 Identities=17% Similarity=0.326 Sum_probs=91.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++......
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 8 FDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP------------RATSGRIVFDGKDITDWQTA 75 (237)
T ss_pred EEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCceEEECCEecCCCCHH
Confidence 456667776667889999888 89999999999999999999999965 89999999999765432210
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
. ...+.++++++...
T Consensus 76 ~----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 76 K----IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred H----HHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHH
Confidence 0 00112222222110
Q ss_pred ------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 ------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 ------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 152 l~~~p~illlDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (237)
T PRK11614 152 LMSQPRLLLLDEPSL---GLAPIIIQQIFDTIEQLREQGMTIFLVEQNA 197 (237)
T ss_pred HHhCCCEEEEcCccc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 079999999 999999999999999998765 89999986
No 88
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.64 E-value=5e-16 Score=136.33 Aligned_cols=123 Identities=23% Similarity=0.266 Sum_probs=90.4
Q ss_pred eeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 138 EPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 138 ~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...
T Consensus 5 ~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~ 72 (221)
T TIGR02211 5 ENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD------------NPTSGEVLFNGQSLSKL 72 (221)
T ss_pred EeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEEhhhc
Confidence 456666753 34788888887 89999999999999999999999965 89999999999876543
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+..... .-....++++++....
T Consensus 73 ~~~~~~-~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 151 (221)
T TIGR02211 73 SSNERA-KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVA 151 (221)
T ss_pred CHhHHH-HHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 211000 0000123333332100
Q ss_pred -----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||.. ++|....+.+.+.+.++.+. + +|++||+++
T Consensus 152 laral~~~p~illlDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 152 IARALVNQPSLVLADEPTG---NLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred HHHHHhCCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999763 4 999999863
No 89
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.64 E-value=5.2e-16 Score=136.16 Aligned_cols=117 Identities=17% Similarity=0.261 Sum_probs=90.2
Q ss_pred eeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 138 EPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 138 ~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
+.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++....
T Consensus 4 ~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~- 70 (220)
T cd03263 4 RNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL------------RPTSGTAYINGYSIRTDR- 70 (220)
T ss_pred EeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEecccch-
Confidence 456667765 56789999888 89999999999999999999999965 899999999998754211
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
....+.++++++....
T Consensus 71 -----~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 145 (220)
T cd03263 71 -----KAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLA 145 (220)
T ss_pred -----HHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHH
Confidence 0112233333332110
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 146 ~al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 192 (220)
T cd03263 146 IALIGGPSVLLLDEPTS---GLDPASRRAIWDLILEVRKGRSIILTTHSM 192 (220)
T ss_pred HHHhcCCCEEEECCCCC---CCCHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 79999999 999999999999999987633 99999986
No 90
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.64 E-value=6.5e-16 Score=134.99 Aligned_cols=124 Identities=23% Similarity=0.267 Sum_probs=87.9
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc------
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG------ 210 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~------ 210 (276)
+.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.
T Consensus 3 ~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~~i 70 (213)
T cd03235 3 EDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL------------KPTSGSIRVFGKPLEKERKRI 70 (213)
T ss_pred ccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCCEEEECCccHHHHHhhe
Confidence 34556666666789999888 89999999999999999999999965 899999999986532
Q ss_pred -ccccccCCCC--cee--eeEEE--------------------------Eec---------------------------C
Q 023887 211 -EVSTKSGRGK--HTT--RHVSL--------------------------LPL---------------------------S 232 (276)
Q Consensus 211 -~vs~~~g~gk--~tt--~~~~~--------------------------~~~---------------------------~ 232 (276)
-+...+.... ..| ..+.+ +.+ +
T Consensus 71 ~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 150 (213)
T cd03235 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQD 150 (213)
T ss_pred EEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 1111111000 000 00000 000 0
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+++|||.. ++|....+.+.+.+.++.+.+ +|++||+++
T Consensus 151 p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~ 193 (213)
T cd03235 151 PDLLLLDEPFA---GVDPKTQEDIYELLRELRREGMTILVVTHDLG 193 (213)
T ss_pred CCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 01179999999 999999999999999998665 999999863
No 91
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=3.8e-16 Score=139.10 Aligned_cols=120 Identities=14% Similarity=0.207 Sum_probs=89.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+..
T Consensus 6 ~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 6 AKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV------------PRDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred EeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCHH
Confidence 345666776667889999888 89999999999999999999999965 89999999998765332110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
.. ....++++++..
T Consensus 74 ~~----~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 74 AR----ARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred HH----HHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHH
Confidence 00 000111111110
Q ss_pred -------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 -------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 -------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 150 ral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 197 (241)
T PRK10895 150 RALAANPKFILLDEPFA---GVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197 (241)
T ss_pred HHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence 0079999999 999999999999999998766 99999986
No 92
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.64 E-value=3.2e-16 Score=152.08 Aligned_cols=121 Identities=19% Similarity=0.277 Sum_probs=98.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
.+.+.++|+.-..|+++++.+ +|++.+++|.||+||||||+.|.|. |+|++|+|+++|+++...++.
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv------------~~p~~G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV------------YPPDSGEILIDGKPVAFSSPR 78 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc------------ccCCCceEEECCEEccCCCHH
Confidence 456788998889999999998 9999999999999999999999994 599999999999987654433
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
.. ....+.++.|+..+
T Consensus 79 ~A----~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~V 154 (500)
T COG1129 79 DA----LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMV 154 (500)
T ss_pred HH----HhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHH
Confidence 22 22333333333211
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|+|||+. .|...+.+.|.+.+.+++++| +|++||.|+
T Consensus 155 eIArAl~~~arllIlDEPTa---aLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~ 206 (500)
T COG1129 155 EIARALSFDARVLILDEPTA---ALTVKETERLFDLIRRLKAQGVAIIYISHRLD 206 (500)
T ss_pred HHHHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH
Confidence 79999999 999888999999999999998 999999874
No 93
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.64 E-value=4.1e-16 Score=132.93 Aligned_cols=117 Identities=25% Similarity=0.321 Sum_probs=89.3
Q ss_pred eeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 138 EPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 138 ~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
+.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++....
T Consensus 4 ~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~~~- 70 (178)
T cd03247 4 NNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL------------KPQQGEITLDGVPVSDLE- 70 (178)
T ss_pred EEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCCEEEECCEEHHHHH-
Confidence 4556666543 5788888887 89999999999999999999999965 899999999998765321
Q ss_pred ccCCCCceeeeEEEEecCC---------------------------------CcEEEecCCCCCCCCChhhHHHHHHHHH
Q 023887 215 KSGRGKHTTRHVSLLPLSG---------------------------------GGYLADTPGFNQPSLLKVTKQSLAQTFP 261 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~---------------------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ 261 (276)
.. ..+.++++++.+ ..+++|||.. ++|....+.+.+.+.
T Consensus 71 ~~-----~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~---~LD~~~~~~l~~~l~ 142 (178)
T cd03247 71 KA-----LSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTV---GLDPITERQLLSLIF 142 (178)
T ss_pred HH-----HHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcc---cCCHHHHHHHHHHHH
Confidence 10 112333333321 1289999999 999999999999999
Q ss_pred HHhhcc-eEEEeeeC
Q 023887 262 EVCAVG-LLYMIHML 275 (276)
Q Consensus 262 ei~~~~-ii~~~H~~ 275 (276)
++.+.. ++++||++
T Consensus 143 ~~~~~~tii~~sh~~ 157 (178)
T cd03247 143 EVLKDKTLIWITHHL 157 (178)
T ss_pred HHcCCCEEEEEecCH
Confidence 986423 89999986
No 94
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.64 E-value=8.9e-16 Score=134.65 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=90.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++....
T Consensus 14 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~i~~~~-- 79 (214)
T PRK13543 14 AHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL------------HVESGQIQIDGKTATRGD-- 79 (214)
T ss_pred EeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC------------CCCCeeEEECCEEccchh--
Confidence 456667776667889999888 89999999999999999999999955 899999999987653210
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
..+.++++++.+
T Consensus 80 ------~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 80 ------RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred ------hhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHh
Confidence 001122222110
Q ss_pred ---CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 ---GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 ---~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+++|||.. ++|....+.+.+.+.++.+.+ ++++||+++
T Consensus 154 ~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 154 SPAPLWLLDEPYA---NLDLEGITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred cCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 0179999999 999999999999999987765 999999863
No 95
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.63 E-value=1e-15 Score=132.58 Aligned_cols=117 Identities=24% Similarity=0.332 Sum_probs=90.4
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 4 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~- 70 (198)
T TIGR01189 4 RNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL------------RPDSGEVRWNGTALAEQRDE- 70 (198)
T ss_pred EEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCEEcccchHH-
Confidence 45666777667889999888 89999999999999999999999955 89999999999865432210
Q ss_pred CCCCceeeeEEEEecCCC--------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGG-------------------------------------------------------------- 234 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~-------------------------------------------------------------- 234 (276)
..+.++++++...
T Consensus 71 -----~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 71 -----PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred -----hhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcC
Confidence 1122233322110
Q ss_pred --cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 --GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 --~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+.+ +|++||+.
T Consensus 146 p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 146 APLWILDEPTT---ALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred CCEEEEeCCCc---CCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 079999999 999999999999999987665 99999975
No 96
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.63 E-value=5.1e-16 Score=145.95 Aligned_cols=123 Identities=21% Similarity=0.271 Sum_probs=98.3
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|.|.. +|++|+|+++|.++..
T Consensus 4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~------------~p~~G~I~i~G~~i~~ 71 (343)
T TIGR02314 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE------------RPTSGSVIVDGQDLTT 71 (343)
T ss_pred EEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCc
Confidence 4556677742 25789999988 89999999999999999999999966 8999999999998766
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+... -+..++.+++++|....
T Consensus 72 ~~~~~--l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV 149 (343)
T TIGR02314 72 LSNSE--LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRV 149 (343)
T ss_pred CCHHH--HHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 53211 01124567777775422
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||.. ++|..+...+.+++.++.+. + ++++||+++
T Consensus 150 ~IARAL~~~P~iLLlDEPts---~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATS---ALDPATTQSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999874 5 999999873
No 97
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=2.6e-16 Score=143.72 Aligned_cols=112 Identities=21% Similarity=0.306 Sum_probs=98.9
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
..++++++.+ +|++.+++|+||+|||||++++.+.. +|++|+|.++|+++..++... -+..++.+
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le------------~PtsG~v~v~G~di~~l~~~~--Lr~~R~~I 85 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE------------RPTSGSVFVDGQDLTALSEAE--LRQLRQKI 85 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC------------CCCCceEEEcCEecccCChHH--HHHHHhhc
Confidence 4688888888 89999999999999999999999977 999999999999988876533 24577899
Q ss_pred EEEecCCCc--------------------------------------------------------------------EEE
Q 023887 227 SLLPLSGGG--------------------------------------------------------------------YLA 238 (276)
Q Consensus 227 ~~~~~~~~~--------------------------------------------------------------------~ii 238 (276)
+|++|.+++ +++
T Consensus 86 GMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~ 165 (339)
T COG1135 86 GMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLC 165 (339)
T ss_pred cEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEe
Confidence 999998755 699
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
|||+. .||+.+.+.+.+++.++.+. | |+++||.|+
T Consensus 166 DEaTS---ALDP~TT~sIL~LL~~In~~lglTIvlITHEm~ 203 (339)
T COG1135 166 DEATS---ALDPETTQSILELLKDINRELGLTIVLITHEME 203 (339)
T ss_pred cCccc---cCChHHHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 99999 99999999999999999975 7 999999874
No 98
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.63 E-value=4.9e-16 Score=147.40 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=95.5
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+.
T Consensus 5 ~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~------------~p~~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 5 TLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE------------DITSGDLFIGEKRMNDVPP 72 (369)
T ss_pred EEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCCCCH
Confidence 3456777887767889999888 89999999999999999999999965 8999999999987654321
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|....
T Consensus 73 -------~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLA 145 (369)
T PRK11000 73 -------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG 145 (369)
T ss_pred -------hHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHH
Confidence 11345555554211
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||....+.+.+.+.++.+. + +|++||++
T Consensus 146 raL~~~P~lLLLDEPts---~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~ 194 (369)
T PRK11000 146 RTLVAEPSVFLLDEPLS---NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194 (369)
T ss_pred HHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH
Confidence 79999999 99999999999999999764 5 99999986
No 99
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.63 E-value=6.2e-16 Score=137.04 Aligned_cols=123 Identities=22% Similarity=0.295 Sum_probs=88.2
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc--
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST-- 214 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~-- 214 (276)
+.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+.
T Consensus 4 ~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~~~ 71 (236)
T cd03219 4 RGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL------------RPTSGSVLFDGEDITGLPPHE 71 (236)
T ss_pred eeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCceEEECCEECCCCCHHH
Confidence 45666776666889999888 89999999999999999999999965 8999999999876543211
Q ss_pred -----------ccCCCCcee--eeEEE--------------------------------EecC-----------------
Q 023887 215 -----------KSGRGKHTT--RHVSL--------------------------------LPLS----------------- 232 (276)
Q Consensus 215 -----------~~g~gk~tt--~~~~~--------------------------------~~~~----------------- 232 (276)
....-...| ..+.+ +.+.
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRR 151 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHH
Confidence 000000000 00000 0000
Q ss_pred ----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 ----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.+ +|++||++
T Consensus 152 v~la~al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 203 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAA---GLNPEETEELAELIRELRERGITVLLVEHDM 203 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 00079999999 999999999999999998665 89999986
No 100
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=5.9e-16 Score=140.52 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=91.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.... .
T Consensus 4 ~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~-~ 70 (271)
T PRK13638 4 TSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL------------RPQKGAVLWQGKPLDYSK-R 70 (271)
T ss_pred EEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCccEEEECCEEccccc-C
Confidence 456777887667899999988 89999999999999999999999965 899999999998753100 0
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
.. ....+.++++++...
T Consensus 71 ~~--~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 71 GL--LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred CH--HHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHH
Confidence 00 000112222222110
Q ss_pred --------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 --------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 --------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+|+|||.. ++|......+.+.+.++.+.+ +|++||++
T Consensus 149 raL~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~ 196 (271)
T PRK13638 149 GALVLQARYLLLDEPTA---GLDPAGRTQMIAIIRRIVAQGNHVIISSHDI 196 (271)
T ss_pred HHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 079999999 999999999999999998665 89999986
No 101
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=4.4e-16 Score=146.33 Aligned_cols=123 Identities=18% Similarity=0.273 Sum_probs=94.7
Q ss_pred ceeEEEecC----CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~------------~p~~G~I~~~g~~i~~ 71 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE------------RPTSGRVLVDGQDLTA 71 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCc
Confidence 456677776 245788999888 89999999999999999999999965 8999999999987754
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+...- +...+.++++++....
T Consensus 72 ~~~~~~--~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv 149 (343)
T PRK11153 72 LSEKEL--RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRV 149 (343)
T ss_pred CCHHHH--HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 332110 0012345555543211
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||.. ++|......+.+.+.++.+. + +|++||+++
T Consensus 150 ~lAraL~~~p~iLlLDEPts---~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 150 AIARALASNPKVLLCDEATS---ALDPATTRSILELLKDINRELGLTIVLITHEMD 202 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999764 5 999999863
No 102
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=5.7e-16 Score=137.39 Aligned_cols=124 Identities=23% Similarity=0.278 Sum_probs=91.5
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|+++..
T Consensus 8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~i~~ 75 (233)
T PRK11629 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD------------TPTSGDVIFNGQPMSK 75 (233)
T ss_pred EEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcCc
Confidence 4556667753 35788888887 89999999999999999999999965 8999999999987654
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+...- .....+.++++++....
T Consensus 76 ~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl 154 (233)
T PRK11629 76 LSSAAK-AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRV 154 (233)
T ss_pred CCHHHH-HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 321100 00001223333332110
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeCC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHMLH 276 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~~ 276 (276)
+|+|||.. ++|....+.+.+.+.++.+ .| +|++||+++
T Consensus 155 ~la~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~ 207 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTG---NLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 79999999 9999999999999999975 35 899999863
No 103
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=3.7e-16 Score=136.29 Aligned_cols=127 Identities=17% Similarity=0.237 Sum_probs=100.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
..+.+.+.|++...+++++..+ +++++||+|||||||||||++|-...... -..-.+|+|.++|+++....-
T Consensus 9 ~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~-------~~~r~~G~v~~~g~ni~~~~~ 81 (253)
T COG1117 9 EVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLI-------PGARVEGEVLLDGKNIYDPKV 81 (253)
T ss_pred EecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccC-------cCceEEEEEEECCeeccCCCC
Confidence 3456788899999999999998 78999999999999999999998855100 001234999999998876421
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
.. -..++.++|++|.++-
T Consensus 82 d~---~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL 158 (253)
T COG1117 82 DV---VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL 158 (253)
T ss_pred CH---HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH
Confidence 11 1156788899886532
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||.. .||+++...+.+++.|+++.= |+++||+|
T Consensus 159 cIARalAv~PeVlLmDEPtS---ALDPIsT~kIEeLi~eLk~~yTIviVTHnm 208 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTS---ALDPISTLKIEELITELKKKYTIVIVTHNM 208 (253)
T ss_pred HHHHHHhcCCcEEEecCccc---ccCchhHHHHHHHHHHHHhccEEEEEeCCH
Confidence 69999999 999999999999999999753 99999987
No 104
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.63 E-value=3.8e-16 Score=149.75 Aligned_cols=120 Identities=17% Similarity=0.267 Sum_probs=99.7
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
.-+++.|..-...+++++.+ +|++.+++|.||+|||||||+|.| +|+|++|+|.++|+++.--++..
T Consensus 8 ~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G------------~~~P~~GeI~v~G~~v~~~sP~d 75 (501)
T COG3845 8 RGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFG------------LYQPDSGEIRVDGKEVRIKSPRD 75 (501)
T ss_pred eccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhC------------cccCCcceEEECCEEeccCCHHH
Confidence 34566676666678888887 899999999999999999999999 56999999999999987766554
Q ss_pred CCCCceeeeEEEEecCCCc-------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGGG------------------------------------------------------------- 235 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~~------------------------------------------------------------- 235 (276)
. ....++|+.|.+.+
T Consensus 76 A----~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI 151 (501)
T COG3845 76 A----IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI 151 (501)
T ss_pred H----HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence 3 45566777665422
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|+|||+. -|.+.+.+++.+.+..+++.| ||++||-++
T Consensus 152 lKaLyr~a~iLILDEPTa---VLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 152 LKALYRGARLLILDEPTA---VLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 69999998 888889999999999999998 999999763
No 105
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.63 E-value=7.9e-16 Score=132.30 Aligned_cols=113 Identities=20% Similarity=0.240 Sum_probs=84.5
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceee
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~ 224 (276)
+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.. .... .+...+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~-~~~~--~~~~~~ 68 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL------------RPQSGAVLIDGEPLDY-SRKG--LLERRQ 68 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceeEEECCEEccc-cccc--hHHHHh
Confidence 345678888887 89999999999999999999999965 8999999999977531 1000 000112
Q ss_pred eEEEEecCCC---------------------------------------------------------------------c
Q 023887 225 HVSLLPLSGG---------------------------------------------------------------------G 235 (276)
Q Consensus 225 ~~~~~~~~~~---------------------------------------------------------------------~ 235 (276)
.++++++... .
T Consensus 69 ~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 148 (190)
T TIGR01166 69 RVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDV 148 (190)
T ss_pred hEEEEecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2333332210 0
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|||.. ++|....+.+.+.+.++.+.+ ++++||+++
T Consensus 149 lllDEPt~---~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 149 LLLDEPTA---GLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred EEEcCCcc---cCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 79999999 999999999999999998765 999999874
No 106
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.63 E-value=5.4e-16 Score=132.79 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=85.0
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
.++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++........ ..+.+.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~~~----~~~~i~ 78 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR------------PPASGEITLDGKPVTRRSPRDA----IRAGIA 78 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCccCHHHH----HhCCeE
Confidence 677888777 89999999999999999999999965 8999999999987654321100 122344
Q ss_pred EEecCC---------------------------------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-
Q 023887 228 LLPLSG---------------------------------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG- 267 (276)
Q Consensus 228 ~~~~~~---------------------------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~- 267 (276)
++++.. ..+++|||.. ++|....+.+.+.+.++.+.+
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~~ 155 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTR---GVDVGAKAEIYRLIRELADAGK 155 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCc---CCCHHHHHHHHHHHHHHHHCCC
Confidence 444321 1179999999 999999999999999997655
Q ss_pred -eEEEeeeC
Q 023887 268 -LLYMIHML 275 (276)
Q Consensus 268 -ii~~~H~~ 275 (276)
+|++||++
T Consensus 156 tiii~sh~~ 164 (182)
T cd03215 156 AVLLISSEL 164 (182)
T ss_pred EEEEEeCCH
Confidence 89999985
No 107
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=6.8e-16 Score=137.06 Aligned_cols=62 Identities=27% Similarity=0.430 Sum_probs=53.4
Q ss_pred ceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.
T Consensus 3 ~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~ 66 (241)
T cd03256 3 VENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV------------EPTSGSVLIDGTDIN 66 (241)
T ss_pred EeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCCceEEECCEecc
Confidence 3556777765 56889999888 89999999999999999999999965 899999999987654
No 108
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.63 E-value=5.7e-16 Score=137.84 Aligned_cols=122 Identities=16% Similarity=0.257 Sum_probs=91.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 4 FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE------------EITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred EEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCChh
Confidence 355667776667889999888 89999999999999999999999965 89999999999776431100
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
. +...+.++++++...
T Consensus 72 ~---~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 72 E---RLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIA 148 (240)
T ss_pred H---HHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHH
Confidence 0 001112222222110
Q ss_pred --------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 235 --------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 235 --------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+++|||.. ++|....+.+.+.+.++.+.+ +|++||+++
T Consensus 149 ~al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 197 (240)
T PRK09493 149 RALAVKPKLMLFDEPTS---ALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG 197 (240)
T ss_pred HHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 079999999 999999999999999998665 999999863
No 109
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.63 E-value=8.3e-16 Score=134.18 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=89.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|..+....
T Consensus 5 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~-- 70 (207)
T PRK13539 5 GEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL------------PPAAGTIKLDGGDIDDPD-- 70 (207)
T ss_pred EEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEeCcchh--
Confidence 456677777667899999888 89999999999999999999999965 899999999987542100
Q ss_pred cCCCCceeeeEEEEecC---------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLS--------------------------------------------------------------- 232 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~--------------------------------------------------------------- 232 (276)
....++++++.
T Consensus 71 ------~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 144 (207)
T PRK13539 71 ------VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVS 144 (207)
T ss_pred ------hHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhc
Confidence 00011111100
Q ss_pred -CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 -GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 -~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+++|||.. ++|....+.+.+.+.++.+++ ++++||+++
T Consensus 145 ~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 188 (207)
T PRK13539 145 NRPIWILDEPTA---ALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188 (207)
T ss_pred CCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 00179999999 999999999999999987766 999999863
No 110
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.63 E-value=7.3e-16 Score=138.62 Aligned_cols=125 Identities=22% Similarity=0.219 Sum_probs=90.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc-
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST- 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~- 214 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~~~ 71 (256)
T TIGR03873 4 LSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL------------RPDAGTVDLAGVDLHGLSRR 71 (256)
T ss_pred EEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCCEEEECCEEcccCCHH
Confidence 456677777777899999888 89999999999999999999999965 8999999999876543211
Q ss_pred -----------ccCCCCcee--eeEEE--------EecC-----------------------------------------
Q 023887 215 -----------KSGRGKHTT--RHVSL--------LPLS----------------------------------------- 232 (276)
Q Consensus 215 -----------~~g~gk~tt--~~~~~--------~~~~----------------------------------------- 232 (276)
....-...| .++.+ ....
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred HHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 000000000 00000 0000
Q ss_pred ----CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 ----GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 ----~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+++|||.. ++|....+.+.+.+.++.+.+ ++++||+++
T Consensus 152 l~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (256)
T TIGR03873 152 LAQEPKLLLLDEPTN---HLDVRAQLETLALVRELAATGVTVVAALHDLN 198 (256)
T ss_pred HhcCCCEEEEcCccc---cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 00079999999 999999999999999998765 999999863
No 111
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.63 E-value=9.5e-16 Score=134.93 Aligned_cols=122 Identities=24% Similarity=0.316 Sum_probs=88.3
Q ss_pred ceeEEEecCCc----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~ 71 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL------------KPTSGSIIFDGKDLLK 71 (228)
T ss_pred EEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEccc
Confidence 34566677543 5789999888 89999999999999999999999965 8999999999876543
Q ss_pred cccccCCCCceeeeEEEEecCC----------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSG---------------------------------------------------------- 233 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~---------------------------------------------------------- 233 (276)
.+... .....+.++++++..
T Consensus 72 ~~~~~--~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 149 (228)
T cd03257 72 LSRRL--RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGG 149 (228)
T ss_pred cchhh--HHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHH
Confidence 22100 000000111111100
Q ss_pred ---------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 ---------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 ---------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 150 ~~qrv~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 206 (228)
T cd03257 150 QRQRVAIARALALNPKLLIADEPTS---ALDVSVQAQILDLLKKLQEELGLTLLFITHDL 206 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCC---CCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 0079999999 99999999999999999865 5 89999986
No 112
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=5.9e-16 Score=145.94 Aligned_cols=118 Identities=20% Similarity=0.278 Sum_probs=97.7
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.
T Consensus 8 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~------------~p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 8 VLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE------------KPTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred EEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC------------CCCceEEEECCEECCCCCH
Confidence 3456777887767788999888 89999999999999999999999965 9999999999988765432
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|+...
T Consensus 76 -------~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLA 148 (351)
T PRK11432 76 -------QQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALA 148 (351)
T ss_pred -------HHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 22456666665321
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|....+++.+.+.++.+. + +|++|||+
T Consensus 149 RaL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 197 (351)
T PRK11432 149 RALILKPKVLLFDEPLS---NLDANLRRSMREKIRELQQQFNITSLYVTHDQ 197 (351)
T ss_pred HHHHcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 79999999 99999999999999999764 5 99999986
No 113
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.62 E-value=9.2e-16 Score=135.40 Aligned_cols=123 Identities=25% Similarity=0.261 Sum_probs=90.1
Q ss_pred ceeEEEecCCc----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 9 ~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~~~~ 76 (228)
T PRK10584 9 VHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD------------DGSSGEVSLVGQPLHQ 76 (228)
T ss_pred EeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCeeEEECCEEccc
Confidence 45566777542 4788999888 89999999999999999999999965 8999999999987644
Q ss_pred cccccCCCCceeeeEEEEecCCC---------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGG--------------------------------------------------------- 234 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~--------------------------------------------------------- 234 (276)
..... ..+.....++++++...
T Consensus 77 ~~~~~-~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl 155 (228)
T PRK10584 77 MDEEA-RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRV 155 (228)
T ss_pred CCHHH-HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHH
Confidence 32110 00000012232222210
Q ss_pred -----------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 -----------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 -----------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+|+|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 156 ~la~al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 207 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTG---NLDRQTGDKIADLLFSLNREHGTTLILVTHDL 207 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 079999999 99999999999999999754 4 99999986
No 114
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.62 E-value=4.7e-16 Score=147.17 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=93.2
Q ss_pred cCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCce
Q 023887 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (276)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~t 222 (276)
|+....++++++.+ +|++++|+|+||+|||||+++|.|.. +|++|+|+++|.++...+... .....
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~------------~p~~G~I~i~G~~i~~~~~~~-~~~~r 69 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI------------EPTAGQIFIDGENIMKQSPVE-LREVR 69 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC------------CCCceEEEECCEECCcCCHHH-HHHHH
Confidence 34455678888887 89999999999999999999999965 999999999999887654321 00001
Q ss_pred eeeEEEEecCCCc-------------------------------------------------------------------
Q 023887 223 TRHVSLLPLSGGG------------------------------------------------------------------- 235 (276)
Q Consensus 223 t~~~~~~~~~~~~------------------------------------------------------------------- 235 (276)
++.+++++|....
T Consensus 70 r~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~ 149 (363)
T TIGR01186 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPD 149 (363)
T ss_pred hCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4567777765422
Q ss_pred -EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. ++|....+.+.+.+.++.+. + ++++|||++
T Consensus 150 iLLlDEP~s---aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 150 ILLMDEAFS---ALDPLIRDSMQDELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred EEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999764 5 999999973
No 115
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.62 E-value=8.6e-16 Score=135.74 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=89.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 10 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 77 (225)
T PRK10247 10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI------------SPTSGTLLFEGEDISTLKPE 77 (225)
T ss_pred EeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCCeEEECCEEcCcCCHH
Confidence 345666776667889999888 89999999999999999999999965 89999999998765332110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
. ....++++++..
T Consensus 78 ~-----~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 78 I-----YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred H-----HHhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence 0 001111111110
Q ss_pred ----CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 234 ----GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 234 ----~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
..+++|+|.. ++|....+.+.+.+.++.+. + ++++||+++
T Consensus 153 ~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 153 QFMPKVLLLDEITS---ALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred hcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 0179999999 99999999999999998753 4 899999863
No 116
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.62 E-value=6.3e-16 Score=132.02 Aligned_cols=96 Identities=25% Similarity=0.339 Sum_probs=83.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCc--
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG-- 235 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~-- 235 (276)
.|++++|+|+||+|||||+|+++|.. .|.+|+|+++|++.....+ ..+.+++++|+.+.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~------------~P~~G~i~i~g~d~t~~~P-------~~RPVSmlFQEnNLFa 84 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFE------------TPASGEILINGVDHTASPP-------AERPVSMLFQENNLFA 84 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhcc------------CCCCceEEEcCeecCcCCc-------ccCChhhhhhccccch
Confidence 79999999999999999999999965 9999999999998876543 44677888887654
Q ss_pred ------------------------------------------------------------------EEEecCCCCCCCCC
Q 023887 236 ------------------------------------------------------------------YLADTPGFNQPSLL 249 (276)
Q Consensus 236 ------------------------------------------------------------------~iiDtPg~~~~~l~ 249 (276)
+++|||.. .+|
T Consensus 85 HLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFs---ALd 161 (231)
T COG3840 85 HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFS---ALD 161 (231)
T ss_pred hhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchh---hcC
Confidence 69999999 999
Q ss_pred hhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 250 KVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 250 ~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+.-..++.++..+++.+ + ++++||..
T Consensus 162 P~LR~eMl~Lv~~l~~E~~~TllmVTH~~ 190 (231)
T COG3840 162 PALRAEMLALVSQLCDERKMTLLMVTHHP 190 (231)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence 99899999999999975 4 99999975
No 117
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.62 E-value=1.4e-15 Score=131.72 Aligned_cols=118 Identities=23% Similarity=0.314 Sum_probs=91.2
Q ss_pred ceeEEEecCC------ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 137 YEPLFCSVES------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 137 ~~~~~~s~~~------~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|.++|+++
T Consensus 6 ~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~----------~~~~~~G~i~~~g~~~ 75 (194)
T cd03213 6 FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR----------TGLGVSGEVLINGRPL 75 (194)
T ss_pred EEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC----------CCCCCceEEEECCEeC
Confidence 4556677754 46788888887 89999999999999999999999943 1389999999999876
Q ss_pred cccccccCCCCceeeeEEEEecCC---------------------------------------CcEEEecCCCCCCCCCh
Q 023887 210 GEVSTKSGRGKHTTRHVSLLPLSG---------------------------------------GGYLADTPGFNQPSLLK 250 (276)
Q Consensus 210 ~~vs~~~g~gk~tt~~~~~~~~~~---------------------------------------~~~iiDtPg~~~~~l~~ 250 (276)
.... ..+.++++++.. ..+++|||.. ++|.
T Consensus 76 ~~~~--------~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~---~LD~ 144 (194)
T cd03213 76 DKRS--------FRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTS---GLDS 144 (194)
T ss_pred chHh--------hhheEEEccCcccCCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc---CCCH
Confidence 4310 112233333321 1179999999 9999
Q ss_pred hhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 251 VTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 251 ~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
...+.+.+.+.++.+.+ +|++||++
T Consensus 145 ~~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 145 SSALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 99999999999998765 89999986
No 118
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.62 E-value=1.3e-15 Score=135.34 Aligned_cols=126 Identities=22% Similarity=0.259 Sum_probs=89.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc--
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS-- 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs-- 213 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|.++|.++...+
T Consensus 3 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----------~~~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 3 IKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHP----------SYEVTSGTILFKGQDLLELEPD 72 (243)
T ss_pred EeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------CCCCCcceEEECCEecCCCCHH
Confidence 356677777667899999988 89999999999999999999999963 13789999999886543211
Q ss_pred -----------cccCCCCcee------------e------------------------eEE--EEe------cC------
Q 023887 214 -----------TKSGRGKHTT------------R------------------------HVS--LLP------LS------ 232 (276)
Q Consensus 214 -----------~~~g~gk~tt------------~------------------------~~~--~~~------~~------ 232 (276)
..+..-.+.| . ... +.. ++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 152 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKR 152 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHH
Confidence 0000000000 0 000 000 10
Q ss_pred ----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 ----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 153 l~la~al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~ 204 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDS---GLDIDALKIVAEGINRLREPDRSFLIITHYQ 204 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcc---cCCHHHHHHHHHHHHHHHHCCcEEEEEEecH
Confidence 01179999999 999999999999999998765 99999986
No 119
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=8.9e-16 Score=136.87 Aligned_cols=118 Identities=20% Similarity=0.338 Sum_probs=88.7
Q ss_pred eeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 138 EPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 138 ~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
+.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++......
T Consensus 4 ~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 71 (242)
T cd03295 4 ENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI------------EPTSGEIFIDGEDIREQDPV 71 (242)
T ss_pred EEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCeEcCcCChH
Confidence 456677766 56788898888 89999999999999999999999965 89999999998765431110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
. ....++++++.+
T Consensus 72 ~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~l 146 (242)
T cd03295 72 E-----LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGV 146 (242)
T ss_pred H-----hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHH
Confidence 0 001111111110
Q ss_pred --------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 --------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 --------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 147 aral~~~p~llllDEPt~---~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~ 196 (242)
T cd03295 147 ARALAADPPLLLMDEPFG---ALDPITRDQLQEEFKRLQQELGKTIVFVTHDI 196 (242)
T ss_pred HHHHhcCCCEEEecCCcc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 1179999999 99999999999999999764 5 89999986
No 120
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.2e-16 Score=150.69 Aligned_cols=121 Identities=21% Similarity=0.288 Sum_probs=97.9
Q ss_pred cCceeEEEecCCcc--chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~~~--~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.+.+ .++++++.+ +|++++|+|+||||||||++.|.| .|+|++|+|.++|.++..
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~------------~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG------------AWDPQQGSITLNGVEIAS 404 (573)
T ss_pred eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHh------------ccCCCCCeeeECCcChhh
Confidence 34567788887655 899999998 899999999999999999999999 459999999999999988
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++++. ....+.+++|..+.
T Consensus 405 l~~~~-----~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE 479 (573)
T COG4987 405 LDEQA-----LRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGE 479 (573)
T ss_pred CChhh-----HHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchH
Confidence 87643 23344444443321
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-ceEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-GLLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~ii~~~H~~ 275 (276)
+++|||+. ++|+++.+++.+.+.+-.+. .+|++||.+
T Consensus 480 ~rRLAlAR~LL~dapl~lLDEPTe---gLD~~TE~~vL~ll~~~~~~kTll~vTHrL 533 (573)
T COG4987 480 RRRLALARALLHDAPLWLLDEPTE---GLDPITERQVLALLFEHAEGKTLLMVTHRL 533 (573)
T ss_pred HHHHHHHHHHHcCCCeEEecCCcc---cCChhhHHHHHHHHHHHhcCCeEEEEeccc
Confidence 79999999 99999999988877776653 399999986
No 121
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=8.7e-16 Score=138.98 Aligned_cols=126 Identities=18% Similarity=0.226 Sum_probs=90.2
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc-
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS- 213 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs- 213 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++....
T Consensus 13 ~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ------------PPSEGEILLDAQPLESWSS 80 (265)
T ss_pred EEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCCEEEECCEehhhCCH
Confidence 3556777787667899999988 89999999999999999999999955 899999999987653211
Q ss_pred -----------cccCCCCcee--eeEEE--E---e---cC----------------------------------------
Q 023887 214 -----------TKSGRGKHTT--RHVSL--L---P---LS---------------------------------------- 232 (276)
Q Consensus 214 -----------~~~g~gk~tt--~~~~~--~---~---~~---------------------------------------- 232 (276)
...+.-...+ ..+.+ . . ..
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 160 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM 160 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHH
Confidence 1000000000 00000 0 0 00
Q ss_pred -----CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 233 -----GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 233 -----~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+..+|+|||.. ++|....+.+.+.+.++.+. + +|++||+++
T Consensus 161 al~~~p~lllLDEPt~---~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 161 LVAQDSRCLLLDEPTS---ALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN 209 (265)
T ss_pred HHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 00079999999 99999999999999999764 5 999999863
No 122
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.4e-15 Score=137.13 Aligned_cols=114 Identities=21% Similarity=0.286 Sum_probs=88.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 4 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~- 70 (255)
T PRK11248 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV------------PYQHGSITLDGKPVEGPGA- 70 (255)
T ss_pred EEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCC-
Confidence 345667776666789999888 89999999999999999999999965 8999999999876532110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
.++++++..
T Consensus 71 ---------~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~lar 141 (255)
T PRK11248 71 ---------ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIAR 141 (255)
T ss_pred ---------cEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHH
Confidence 011111110
Q ss_pred ------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 234 ------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 234 ------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+ .+ +|++||++
T Consensus 142 al~~~p~lllLDEPt~---~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~ 189 (255)
T PRK11248 142 ALAANPQLLLLDEPFG---ALDAFTREQMQTLLLKLWQETGKQVLLITHDI 189 (255)
T ss_pred HHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 0079999999 9999999999999999854 34 89999986
No 123
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.62 E-value=8.3e-16 Score=135.35 Aligned_cols=121 Identities=17% Similarity=0.258 Sum_probs=100.1
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+...|+....+.++++.+ +|++++++|+||||||||+++|+|.. +|.+|+|.++|+++...++
T Consensus 5 ~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~------------~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV------------RPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred eEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeeEEECCeecCCCCH
Confidence 3466788888888999999998 89999999999999999999999977 8999999999999987654
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
+.- ....++++|+..+.
T Consensus 73 ~~r----~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 73 HER----ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred HHH----HhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHH
Confidence 422 34455555553222
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++.+.-.+++.+.+.++++. + |+++.++.
T Consensus 149 RALm~~PklLLLDEPs~---GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~ 197 (237)
T COG0410 149 RALMSRPKLLLLDEPSE---GLAPKIVEEIFEAIKELRKEGGMTILLVEQNA 197 (237)
T ss_pred HHHhcCCCEEEecCCcc---CcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH
Confidence 79999999 99999999999999999976 5 88888764
No 124
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.62 E-value=8.8e-16 Score=145.95 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=97.3
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.
T Consensus 16 ~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~------------~p~~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 16 ELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE------------TPDSGRIMLDGQDITHVPA 83 (375)
T ss_pred EEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCCCCH
Confidence 4566778887766788888888 89999999999999999999999966 8999999999998765432
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|+...
T Consensus 84 -------~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLA 156 (375)
T PRK09452 84 -------ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIA 156 (375)
T ss_pred -------HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 12456666655321
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|...++.+.+.+.++.+. + +|++|||+
T Consensus 157 RaL~~~P~llLLDEP~s---~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~ 205 (375)
T PRK09452 157 RAVVNKPKVLLLDESLS---ALDYKLRKQMQNELKALQRKLGITFVFVTHDQ 205 (375)
T ss_pred HHHhcCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 99999999999999999874 5 89999985
No 125
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=7.3e-16 Score=140.80 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=94.3
Q ss_pred CceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 136 ~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...
T Consensus 7 ~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~------------~p~~G~i~~~g~~i~~~ 74 (279)
T PRK13635 7 RVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL------------LPEAGTITVGGMVLSEE 74 (279)
T ss_pred EEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECCEECCcC
Confidence 34567777753 35788888887 89999999999999999999999966 89999999999877543
Q ss_pred ccccCCCCceeeeEEEEecCCC-c--------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGG-G-------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~-~-------------------------------------------------------- 235 (276)
+... ..+.++++++... .
T Consensus 75 ~~~~-----~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv 149 (279)
T PRK13635 75 TVWD-----VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRV 149 (279)
T ss_pred cHHH-----HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHH
Confidence 2111 1223444444320 0
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. ++|..+...+.+.+.++.+. + ++++||+++
T Consensus 150 ~laral~~~p~lllLDEPt~---gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~ 202 (279)
T PRK13635 150 AIAGVLALQPDIIILDEATS---MLDPRGRREVLETVRQLKEQKGITVLSITHDLD 202 (279)
T ss_pred HHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 79999999 99999999999999999875 5 899999863
No 126
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.62 E-value=7.1e-16 Score=145.50 Aligned_cols=118 Identities=15% Similarity=0.231 Sum_probs=97.6
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|+.+....+
T Consensus 6 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 6 SIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE------------RQTAGTIYQGGRDITRLPP 73 (353)
T ss_pred EEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC------------CCCceEEEECCEECCCCCH
Confidence 3456777887766788888888 79999999999999999999999966 8999999999988764332
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|....
T Consensus 74 -------~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLA 146 (353)
T TIGR03265 74 -------QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALA 146 (353)
T ss_pred -------HHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHH
Confidence 23456777665322
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|...+..+.+.+.++.++ + +|++|||+
T Consensus 147 RaL~~~P~llLLDEP~s---~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~ 195 (353)
T TIGR03265 147 RALATSPGLLLLDEPLS---ALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195 (353)
T ss_pred HHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 79999999 99999999999999999774 5 99999986
No 127
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.62 E-value=1.2e-15 Score=136.46 Aligned_cols=124 Identities=19% Similarity=0.249 Sum_probs=91.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++......
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 6 VKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE------------QPEAGTIRVGDITIDTARSL 73 (250)
T ss_pred EeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEccccccc
Confidence 456677777667899999988 89999999999999999999999965 89999999998765421100
Q ss_pred c---CCCCceeeeEEEEecCC-----------------------------------------------------------
Q 023887 216 S---GRGKHTTRHVSLLPLSG----------------------------------------------------------- 233 (276)
Q Consensus 216 ~---g~gk~tt~~~~~~~~~~----------------------------------------------------------- 233 (276)
. ...+.....++++++..
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred cchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHH
Confidence 0 00000111222222211
Q ss_pred ----------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 ----------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ----------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 154 ~la~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~ 204 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTS---ALDPELVGEVLNTIRQLAQEKRTMVIVTHEM 204 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 0079999999 999999999999999998765 99999985
No 128
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=1.5e-15 Score=131.09 Aligned_cols=117 Identities=18% Similarity=0.264 Sum_probs=89.2
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|.++|.++..
T Consensus 6 ~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~----------~~~~~~G~i~~~g~~~~~ 75 (192)
T cd03232 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK----------TAGVITGEILINGRPLDK 75 (192)
T ss_pred EeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC----------cCCCcceEEEECCEehHH
Confidence 4556667753 45788888887 89999999999999999999999964 125899999999977531
Q ss_pred cccccCCCCceeeeEEEEecCC---------------------------------------CcEEEecCCCCCCCCChhh
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSG---------------------------------------GGYLADTPGFNQPSLLKVT 252 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~---------------------------------------~~~iiDtPg~~~~~l~~~~ 252 (276)
. ..+.++++++.. ..+++|||.. ++|...
T Consensus 76 ---~------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~---~LD~~~ 143 (192)
T cd03232 76 ---N------FQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTS---GLDSQA 143 (192)
T ss_pred ---H------hhhceEEecccCccccCCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCc---CCCHHH
Confidence 0 111222322221 1279999999 999999
Q ss_pred HHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 253 KQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 253 ~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+.+.+.+.++.+.+ ++++||++
T Consensus 144 ~~~l~~~l~~~~~~~~tiiivtH~~ 168 (192)
T cd03232 144 AYNIVRFLKKLADSGQAILCTIHQP 168 (192)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 999999999998655 99999986
No 129
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.62 E-value=6.8e-16 Score=142.41 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=94.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.....
T Consensus 5 ~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~------------~~~~G~i~i~g~~~~~~~~- 71 (301)
T TIGR03522 5 VSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL------------PPDSGSVQVCGEDVLQNPK- 71 (301)
T ss_pred EEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEcccChH-
Confidence 456778887777899999988 89999999999999999999999965 8999999999976643110
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
...+.++++++....
T Consensus 72 -----~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~ 146 (301)
T TIGR03522 72 -----EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQ 146 (301)
T ss_pred -----HHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHH
Confidence 012334444443211
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||.. ++|....+.+.+.+.++++.. ++++||+++
T Consensus 147 al~~~p~lliLDEPt~---gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~ 193 (301)
T TIGR03522 147 ALIHDPKVLILDEPTT---GLDPNQLVEIRNVIKNIGKDKTIILSTHIMQ 193 (301)
T ss_pred HHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHhcCCCEEEEEcCCHH
Confidence 69999999 999999999999999997533 999999863
No 130
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=9.5e-16 Score=139.76 Aligned_cols=120 Identities=21% Similarity=0.313 Sum_probs=91.2
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|+++...+.
T Consensus 6 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 6 TRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL------------KPTSGSVLIRGEPITKENI 73 (277)
T ss_pred EEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCcCCH
Confidence 456777774 345789999888 89999999999999999999999965 8999999999986543211
Q ss_pred ccCCCCceeeeEEEEecCC-------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSG------------------------------------------------------------- 233 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~------------------------------------------------------------- 233 (276)
.. ....++++++.+
T Consensus 74 ~~-----~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~l 148 (277)
T PRK13652 74 RE-----VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAI 148 (277)
T ss_pred HH-----HHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHH
Confidence 00 112222222211
Q ss_pred --------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 234 --------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 234 --------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
..+|+|||.. ++|....+.+.+.+.++.+. + ++++||+++
T Consensus 149 araL~~~p~llilDEPt~---gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~ 199 (277)
T PRK13652 149 AGVIAMEPQVLVLDEPTA---GLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD 199 (277)
T ss_pred HHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 0079999999 99999999999999999875 5 899999863
No 131
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.62 E-value=8.6e-16 Score=145.41 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=98.2
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccc--cceeeccccccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL--GSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~--G~i~~~g~~~~~ 211 (276)
+.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++ |+|+++|.++..
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV------------KAAGLTGRIAIADRDLTH 73 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCEEEEECCEECCC
Confidence 34567788887767889999888 89999999999999999999999965 8999 999999987754
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+. ..+.+++++|+...
T Consensus 74 ~~~-------~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRv 146 (362)
T TIGR03258 74 APP-------HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRI 146 (362)
T ss_pred CCH-------HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHH
Confidence 322 22456666665322
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc--c--eEEEeeeC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV--G--LLYMIHML 275 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~--~--ii~~~H~~ 275 (276)
+++|||.. ++|....+++.+.+.++.+. | +|++|||+
T Consensus 147 aLARAL~~~P~llLLDEP~s---~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~ 199 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLS---ALDANIRANMREEIAALHEELPELTILCVTHDQ 199 (362)
T ss_pred HHHHHHhcCCCEEEEcCccc---cCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 79999999 99999999999999999875 5 89999986
No 132
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.62 E-value=1.3e-15 Score=137.68 Aligned_cols=116 Identities=22% Similarity=0.245 Sum_probs=89.9
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++....
T Consensus 13 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~------------~p~~G~i~~~g~~~~~~~ 80 (257)
T PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE------------TPSAGELLAGTAPLAEAR 80 (257)
T ss_pred EEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEHHHhh
Confidence 34567778887777889999888 89999999999999999999999965 899999999886542210
Q ss_pred cccCCCCceeeeEEEEecCC------------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSG------------------------------------------------------------ 233 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~------------------------------------------------------------ 233 (276)
..++++++..
T Consensus 81 ----------~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 81 ----------EDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred ----------CceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 1111211110
Q ss_pred --CcEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 234 --GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 234 --~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+ .+ +|++||++
T Consensus 151 ~p~lllLDEPt~---~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~ 194 (257)
T PRK11247 151 RPGLLLLDEPLG---ALDALTRIEMQDLIESLWQQHGFTVLLVTHDV 194 (257)
T ss_pred CCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 0179999999 9999999999999999865 34 89999986
No 133
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.62 E-value=1.9e-16 Score=131.10 Aligned_cols=122 Identities=23% Similarity=0.213 Sum_probs=86.0
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccc-ccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR-VGEVSTK 215 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~-~~~vs~~ 215 (276)
+.+.++|.....++++++.+ +|++++|+|+||+|||||+|+|+|.. +|++|+|++++.. ++-+..-
T Consensus 4 ~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~~~~~i~~~~~l 71 (144)
T cd03221 4 ENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL------------EPDEGIVTWGSTVKIGYFEQL 71 (144)
T ss_pred EEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCceEEEECCeEEEEEEccC
Confidence 45666676656788888887 89999999999999999999999965 8999999998852 1111100
Q ss_pred cCCCCceeeeEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 216 SGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
++-.+..-.-...+..++..+++|||.. ++|......+.+.+.++. ..++++||++
T Consensus 72 S~G~~~rv~laral~~~p~illlDEP~~---~LD~~~~~~l~~~l~~~~-~til~~th~~ 127 (144)
T cd03221 72 SGGEKMRLALAKLLLENPNLLLLDEPTN---HLDLESIEALEEALKEYP-GTVILVSHDR 127 (144)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHcC-CEEEEEECCH
Confidence 0000000000111112345699999999 999999999999988873 2399999985
No 134
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=1.3e-15 Score=127.08 Aligned_cols=118 Identities=22% Similarity=0.369 Sum_probs=91.8
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.....++++++.+ +|++++|+|+||+|||||+++|.|.. +|.+|++++++.++.......
T Consensus 3 ~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~------------~~~~G~i~~~~~~~~~~~~~~ 70 (157)
T cd00267 3 ENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL------------KPTSGEILIDGKDIAKLPLEE 70 (157)
T ss_pred EEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCEEcccCCHHH
Confidence 34555665556788888777 89999999999999999999999965 899999999998765432111
Q ss_pred CCCCceeeeEEEEecC-----------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 217 GRGKHTTRHVSLLPLS-----------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~-----------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
....++++++- +..+++|||.. ++|......+.+.+.++.+.+ ++++||++
T Consensus 71 -----~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~---~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 140 (157)
T cd00267 71 -----LRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEPTS---GLDPASRERLLELLRELAEEGRTVIIVTHDP 140 (157)
T ss_pred -----HHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCc---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 22345554432 23389999999 999999999999999988754 99999985
No 135
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=9.9e-16 Score=137.70 Aligned_cols=124 Identities=23% Similarity=0.297 Sum_probs=89.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc--
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS-- 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs-- 213 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~~ 72 (255)
T PRK11231 5 TENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL------------TPQSGTVFLGDKPISMLSSR 72 (255)
T ss_pred EEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCCcEEEECCEEhHHCCHH
Confidence 456777887777899999888 89999999999999999999999965 899999999987643211
Q ss_pred ----------cccCCCCcee--eeEEE--------Ee------------------cC-----------------------
Q 023887 214 ----------TKSGRGKHTT--RHVSL--------LP------------------LS----------------------- 232 (276)
Q Consensus 214 ----------~~~g~gk~tt--~~~~~--------~~------------------~~----------------------- 232 (276)
.........| ..+.+ +. +.
T Consensus 73 ~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 152 (255)
T PRK11231 73 QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMV 152 (255)
T ss_pred HHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHH
Confidence 1100000000 00000 00 00
Q ss_pred ----CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 ----GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ----~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 153 l~~~p~llllDEP~~---~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~ 198 (255)
T PRK11231 153 LAQDTPVVLLDEPTT---YLDINHQVELMRLMRELNTQGKTVVTVLHDL 198 (255)
T ss_pred HhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 00079999999 999999999999999987665 89999986
No 136
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.61 E-value=1.6e-15 Score=133.48 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=89.6
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++....
T Consensus 4 ~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~~~~~~~~~--- 68 (223)
T TIGR03740 4 KNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL------------RPTSGEIIFDGHPWTRKD--- 68 (223)
T ss_pred EeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEeccccc---
Confidence 45666776667788888887 89999999999999999999999965 899999999987543110
Q ss_pred CCCCceeeeEEEEecCCC--------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGG-------------------------------------------------------------- 234 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~-------------------------------------------------------------- 234 (276)
.+.++++++...
T Consensus 69 ------~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 69 ------LHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred ------cccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 012333332211
Q ss_pred --cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 --GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 --~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|+|.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 143 p~llllDEP~~---~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~ 184 (223)
T TIGR03740 143 PKLLILDEPTN---GLDPIGIQELRELIRSFPEQGITVILSSHIL 184 (223)
T ss_pred CCEEEECCCcc---CCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 079999999 999999999999999998665 99999986
No 137
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.61 E-value=1e-15 Score=138.97 Aligned_cols=122 Identities=21% Similarity=0.310 Sum_probs=90.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 10 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 10 MRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI------------APDHGEILFDGENIPAMSRS 77 (269)
T ss_pred EeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEccccChh
Confidence 455667776667788898888 89999999999999999999999965 89999999998765432110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
.. +...+.++++++..
T Consensus 78 ~~--~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 78 RL--YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred hH--HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 00 00011122222211
Q ss_pred -------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 -------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 -------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 156 ral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 156 RAIALEPDLIMFDEPFV---GQDPITMGVLVKLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred HHHhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 0079999999 99999999999999999764 5 99999985
No 138
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=7.3e-16 Score=139.93 Aligned_cols=121 Identities=20% Similarity=0.290 Sum_probs=90.4
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
.+..+|+....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+...-
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~------------~p~~G~i~i~g~~~~~~~~~~~ 96 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI------------EPTSGKVLIDGQDIAAMSRKEL 96 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEccccChhhh
Confidence 4455566666788888887 89999999999999999999999965 8999999999987654321100
Q ss_pred CCCceeeeEEEEecCCCc--------------------------------------------------------------
Q 023887 218 RGKHTTRHVSLLPLSGGG-------------------------------------------------------------- 235 (276)
Q Consensus 218 ~gk~tt~~~~~~~~~~~~-------------------------------------------------------------- 235 (276)
.+.....++++++....
T Consensus 97 -~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 97 -RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred -hhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 00001223333332110
Q ss_pred ------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 176 ~~~p~illLDEPt~---~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~ 221 (269)
T cd03294 176 AVDPDILLMDEAFS---ALDPLIRREMQDELLRLQAELQKTIVFITHDL 221 (269)
T ss_pred hcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 99999999999999999754 4 99999986
No 139
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.61 E-value=1.1e-15 Score=144.25 Aligned_cols=118 Identities=18% Similarity=0.231 Sum_probs=93.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|+++......
T Consensus 5 i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~------------~p~~G~I~i~g~~i~~~~~~ 72 (353)
T PRK10851 5 IANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE------------HQTSGHIRFHGTDVSRLHAR 72 (353)
T ss_pred EEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCHH
Confidence 456677777667888999888 89999999999999999999999965 89999999999876543211
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
.+.+++++|+..
T Consensus 73 -------~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRv 145 (353)
T PRK10851 73 -------DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRV 145 (353)
T ss_pred -------HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHH
Confidence 122333333210
Q ss_pred -----------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 -----------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 -----------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+++|||.. ++|...++.+.+.+.++.+. + +|++|||++
T Consensus 146 alArAL~~~P~llLLDEP~s---~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ 198 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFG---ALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE 198 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 079999999 99999999999999999875 5 899999863
No 140
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.61 E-value=1.4e-15 Score=135.36 Aligned_cols=62 Identities=29% Similarity=0.412 Sum_probs=53.0
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.
T Consensus 4 ~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 4 VENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV------------EPSSGSILLEGTDIT 67 (243)
T ss_pred EEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCccEEEECCEEhh
Confidence 345667776 566889999888 89999999999999999999999965 899999999987654
No 141
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=9.3e-16 Score=140.03 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=92.8
Q ss_pred ceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 137 YEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...
T Consensus 7 ~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~ 74 (279)
T PRK13650 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL------------EAESGQIIIDGDLLTEE 74 (279)
T ss_pred EEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEECCcC
Confidence 4567777753 24788888887 89999999999999999999999965 89999999999877542
Q ss_pred ccccCCCCceeeeEEEEecCCC-c--------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGG-G-------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~-~-------------------------------------------------------- 235 (276)
+... ..+.++++++.+. .
T Consensus 75 ~~~~-----~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv 149 (279)
T PRK13650 75 NVWD-----IRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRV 149 (279)
T ss_pred cHHH-----HHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHH
Confidence 2111 1223444444320 0
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. ++|....+.+.+.+.++++. | +|++||++
T Consensus 150 ~lAral~~~p~lLlLDEPt~---~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~ 201 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATS---MLDPEGRLELIKTIKGIRDDYQMTVISITHDL 201 (279)
T ss_pred HHHHHHHcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 79999999 99999999999999999874 6 99999986
No 142
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.2e-15 Score=135.91 Aligned_cols=124 Identities=22% Similarity=0.255 Sum_probs=90.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++......
T Consensus 5 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~ 72 (242)
T PRK11124 5 LNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE------------MPRSGTLNIAGNHFDFSKTP 72 (242)
T ss_pred EEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEeccccccc
Confidence 456777777667899999988 89999999999999999999999965 89999999999765210000
Q ss_pred c-CCCCceeeeEEEEecCCC------------------------------------------------------------
Q 023887 216 S-GRGKHTTRHVSLLPLSGG------------------------------------------------------------ 234 (276)
Q Consensus 216 ~-g~gk~tt~~~~~~~~~~~------------------------------------------------------------ 234 (276)
. ...+.....++++++...
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred chhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 0 000001112222222110
Q ss_pred ---------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 ---------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 ---------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||.. ++|....+.+.+.+.++.+.+ ++++||++
T Consensus 153 aral~~~p~llilDEPt~---~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 201 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTA---ALDPEITAQIVSIIRELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHhcCCCEEEEcCCCC---cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 079999999 999999999999999998765 89999985
No 143
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.61 E-value=1.2e-15 Score=154.97 Aligned_cols=121 Identities=21% Similarity=0.259 Sum_probs=106.8
Q ss_pred cCceeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|... ..+++++..+ +|++++++|+||||||||+++|.| +|+|.+|+|.+||.+++.
T Consensus 472 I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~g------------ly~p~~G~I~~dg~dl~~ 539 (709)
T COG2274 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLG------------LYKPQQGRILLDGVDLND 539 (709)
T ss_pred EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEeHHh
Confidence 4467788888765 5799999998 899999999999999999999999 669999999999999999
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++++++++|+.-.
T Consensus 540 i~~~~-----lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQ 614 (709)
T COG2274 540 IDLAS-----LRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQ 614 (709)
T ss_pred cCHHH-----HHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHH
Confidence 88655 88999999997522
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+++.+.+.+.++.... +|+++|.+
T Consensus 615 rQrlalARaLl~~P~ILlLDEaTS---aLD~~sE~~I~~~L~~~~~~~T~I~IaHRl 668 (709)
T COG2274 615 RQRLALARALLSKPKILLLDEATS---ALDPETEAIILQNLLQILQGRTVIIIAHRL 668 (709)
T ss_pred HHHHHHHHHhccCCCEEEEeCccc---ccCHhHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 69999999 999999999999999988655 99999975
No 144
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.6e-15 Score=137.24 Aligned_cols=126 Identities=22% Similarity=0.293 Sum_probs=91.1
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+
T Consensus 8 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~ 75 (265)
T PRK10253 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM------------TPAHGHVWLDGEHIQHYA 75 (265)
T ss_pred EEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCcEEEECCEEhhhCC
Confidence 34567788888777899999988 89999999999999999999999965 899999999987653211
Q ss_pred ------------cccCCCCcee--eeEEE--------E------------------ec----------------------
Q 023887 214 ------------TKSGRGKHTT--RHVSL--------L------------------PL---------------------- 231 (276)
Q Consensus 214 ------------~~~g~gk~tt--~~~~~--------~------------------~~---------------------- 231 (276)
.....-...+ ..+.+ + -+
T Consensus 76 ~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 76 SKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred HHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHH
Confidence 0000000000 00000 0 00
Q ss_pred -----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 232 -----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 232 -----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+..+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 156 ral~~~p~llllDEPt~---gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~ 204 (265)
T PRK10253 156 MVLAQETAIMLLDEPTT---WLDISHQIDLLELLSELNREKGYTLAAVLHDL 204 (265)
T ss_pred HHHhcCCCEEEEeCccc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 001179999999 99999999999999999764 5 99999986
No 145
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.60 E-value=1.4e-15 Score=136.98 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=92.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+.
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 7 NVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE------------KPSEGSIVVNGQTINLVRD 74 (257)
T ss_pred EEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEcccccc
Confidence 3456777777667889999888 89999999999999999999999965 8999999999976542110
Q ss_pred ccC--------CCCceeeeEEEEecCCCc---------------------------------------------------
Q 023887 215 KSG--------RGKHTTRHVSLLPLSGGG--------------------------------------------------- 235 (276)
Q Consensus 215 ~~g--------~gk~tt~~~~~~~~~~~~--------------------------------------------------- 235 (276)
..+ ..+...+.++++++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 154 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLS 154 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 000 000011233333332110
Q ss_pred -------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 -------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 -------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.| ++++||++
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~ 212 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTS---ALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 999999999999999998765 99999986
No 146
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.60 E-value=1.4e-15 Score=134.10 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=88.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|... ...++|++|+|.++|.++...+..
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-------~~~~~~~~G~i~~~g~~~~~~~~~ 75 (227)
T cd03260 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLND-------LIPGAPDEGEVLLDGKDIYDLDVD 75 (227)
T ss_pred EEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc-------cccCCCCCeEEEECCEEhhhcchH
Confidence 345677777667889999888 899999999999999999999999530 012278999999988764321100
Q ss_pred cCCCCceeeeEEEEecC---------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLS--------------------------------------------------------------- 232 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~--------------------------------------------------------------- 232 (276)
. +...+.++++++.
T Consensus 76 ~---~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l 152 (227)
T cd03260 76 V---LELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCL 152 (227)
T ss_pred H---HHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHH
Confidence 0 0000000110000
Q ss_pred -------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 -------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 -------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 153 a~al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 200 (227)
T cd03260 153 ARALANEPEVLLLDEPTS---ALDPISTAKIEELIAELKKEYTIVIVTHNM 200 (227)
T ss_pred HHHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHhhCcEEEEEeccH
Confidence 01179999999 999999999999999997654 99999986
No 147
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=2.9e-15 Score=130.74 Aligned_cols=114 Identities=24% Similarity=0.263 Sum_probs=84.0
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.... .++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 4 ~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~------------~~~~G~i~~~g~~~~~~~~~- 68 (211)
T cd03298 4 DKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE------------TPQSGRVLINGVDVTAAPPA- 68 (211)
T ss_pred EeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEEcCcCCHh-
Confidence 45556665432 2677776 89999999999999999999999965 89999999998765322100
Q ss_pred CCCCceeeeEEEEecCC---------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSG--------------------------------------------------------------- 233 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~--------------------------------------------------------------- 233 (276)
.+.++++++..
T Consensus 69 ------~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 69 ------DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred ------HccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHH
Confidence 01122222110
Q ss_pred -----CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 -----GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 -----~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+. + ++++||++
T Consensus 143 l~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 189 (211)
T cd03298 143 LVRDKPVLLLDEPFA---ALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189 (211)
T ss_pred HhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 0079999999 99999999999999999753 5 89999986
No 148
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.60 E-value=2.1e-15 Score=135.23 Aligned_cols=124 Identities=16% Similarity=0.193 Sum_probs=91.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+.+
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 3 FSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE------------PIDEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred EEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccccc
Confidence 345667777667888999888 89999999999999999999999965 89999999999876432100
Q ss_pred cC-------C-CCceeeeEEEEecCCC-----------------------------------------------------
Q 023887 216 SG-------R-GKHTTRHVSLLPLSGG----------------------------------------------------- 234 (276)
Q Consensus 216 ~g-------~-gk~tt~~~~~~~~~~~----------------------------------------------------- 234 (276)
.+ . .+...+.++++++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG 150 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence 00 0 0001122333332210
Q ss_pred ----------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 ----------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 ----------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+++|||.. ++|......+.+.+.++.+. + +|++||++
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 207 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTS---ALDPELVGEVLNVIRRLASEHDLTMLLVTHEM 207 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 079999999 99999999999999999864 5 99999986
No 149
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.8e-15 Score=137.17 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=90.8
Q ss_pred ceeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+. ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++....
T Consensus 10 i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~~~ 77 (269)
T PRK13648 10 FKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE------------KVKSGEIFYNNQAITDDN 77 (269)
T ss_pred EEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCcCC
Confidence 45667777542 4788888887 89999999999999999999999965 899999999998764321
Q ss_pred cccCCCCceeeeEEEEecCCC-----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGG----------------------------------------------------------- 234 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~----------------------------------------------------------- 234 (276)
... ..+.++++++.+.
T Consensus 78 ~~~-----~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 152 (269)
T PRK13648 78 FEK-----LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVA 152 (269)
T ss_pred HHH-----HHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHH
Confidence 100 1122333332210
Q ss_pred ----------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 ----------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 ----------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+|+|||.. ++|....+.+.+.+.++.+. + +|++||+++
T Consensus 153 laral~~~p~lllLDEPt~---~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 153 IAGVLALNPSVIILDEATS---MLDPDARQNLLDLVRKVKSEHNITIISITHDLS 204 (269)
T ss_pred HHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch
Confidence 079999999 99999999999999999764 5 899999863
No 150
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=1.8e-15 Score=133.43 Aligned_cols=118 Identities=23% Similarity=0.339 Sum_probs=87.5
Q ss_pred ceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 5 ~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~ 72 (229)
T cd03254 5 FENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY------------DPQKGQILIDGIDIRDISR 72 (229)
T ss_pred EEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECCEeHHHcCH
Confidence 4566777764 35789999887 89999999999999999999999966 8999999999866542110
Q ss_pred ccCCCCceeeeEEEEe--------------------------------------------------------c-------
Q 023887 215 KSGRGKHTTRHVSLLP--------------------------------------------------------L------- 231 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~--------------------------------------------------------~------- 231 (276)
.. ....+++++ +
T Consensus 73 ~~-----~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~r 147 (229)
T cd03254 73 KS-----LRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQL 147 (229)
T ss_pred HH-----HhhhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHH
Confidence 00 000000000 0
Q ss_pred ---------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 ---------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 ---------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+..+|+|||.. ++|....+.+.+.+.++.+ + ++++||++
T Consensus 148 v~la~al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 198 (229)
T cd03254 148 LAIARAMLRDPKILILDEATS---NIDTETEKLIQEALEKLMK-GRTSIIIAHRL 198 (229)
T ss_pred HHHHHHHhcCCCEEEEeCccc---cCCHHHHHHHHHHHHHhcC-CCEEEEEecCH
Confidence 011279999999 9999999999999999864 5 99999986
No 151
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=3e-15 Score=132.76 Aligned_cols=117 Identities=17% Similarity=0.250 Sum_probs=91.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++......
T Consensus 3 ~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~------------~~~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03300 3 LENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE------------TPTSGEILLDGKDITNLPPH 70 (232)
T ss_pred EEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcCcCChh
Confidence 345667776667889999887 89999999999999999999999965 89999999999866542211
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
...++++++....
T Consensus 71 -------~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~lar 143 (232)
T cd03300 71 -------KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIAR 143 (232)
T ss_pred -------hcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 1223333332100
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|+|.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 144 al~~~p~llllDEP~~---gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~ 191 (232)
T cd03300 144 ALVNEPKVLLLDEPLG---ALDLKLRKDMQLELKRLQKELGITFVFVTHDQ 191 (232)
T ss_pred HHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 79999999 99999999999999999864 5 99999985
No 152
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=2.1e-15 Score=136.95 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=92.1
Q ss_pred CceeEEEecC--CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 136 GYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 136 ~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...
T Consensus 9 ~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~i~~~ 76 (271)
T PRK13632 9 KVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL------------KPQSGEIKIDGITISKE 76 (271)
T ss_pred EEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEecCcC
Confidence 3456777774 346788888887 89999999999999999999999965 89999999999876432
Q ss_pred ccccCCCCceeeeEEEEecCCC----------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGG---------------------------------------------------------- 234 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~---------------------------------------------------------- 234 (276)
+... ....++++++.+.
T Consensus 77 ~~~~-----~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 151 (271)
T PRK13632 77 NLKE-----IRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRV 151 (271)
T ss_pred CHHH-----HhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHH
Confidence 2110 1223333333210
Q ss_pred -----------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 -----------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 -----------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+++|||.. ++|....+.+.+.+.++.+. + +|++||+++
T Consensus 152 ~laral~~~p~lllLDEP~~---gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 204 (271)
T PRK13632 152 AIASVLALNPEIIIFDESTS---MLDPKGKREIKKIMVDLRKTRKKTLISITHDMD 204 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh
Confidence 079999999 99999999999999999764 3 899999863
No 153
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.60 E-value=1.7e-15 Score=151.27 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=100.8
Q ss_pred cCceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|.. ...++++++.+ +|++++++|+||+|||||+++|+| +|+|++|+|.++|.++..+
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~g------------l~~p~~G~I~idg~~i~~~ 408 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG------------YYPLTEGEIRLDGRPLSSL 408 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCceEEECCEEhhhC
Confidence 445677777754 45789999988 899999999999999999999999 5699999999999988876
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .+.++++++|++..
T Consensus 409 ~~~~-----l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQ 483 (592)
T PRK10790 409 SHSV-----LRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQ 483 (592)
T ss_pred CHHH-----HHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 6443 55677777776422
Q ss_pred --------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 --------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 --------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 484 RialARaLl~~~~illlDEpts---~LD~~t~~~i~~~l~~~~~~~tvIivtHr~ 535 (592)
T PRK10790 484 LLALARVLVQTPQILILDEATA---NIDSGTEQAIQQALAAVREHTTLVVIAHRL 535 (592)
T ss_pred HHHHHHHHHhCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 79999999 999999999999998886544 99999976
No 154
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.60 E-value=1.6e-15 Score=149.37 Aligned_cols=121 Identities=18% Similarity=0.239 Sum_probs=93.1
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+|+|+|.. +|++|+|.++|.++...+.
T Consensus 13 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 80 (510)
T PRK15439 13 CARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV------------PPDSGTLEIGGNPCARLTP 80 (510)
T ss_pred EEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCCCCH
Confidence 3466777887767899999988 89999999999999999999999965 8999999999976543221
Q ss_pred ccCCCCceeeeEEEEecCC-------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSG------------------------------------------------------------- 233 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~------------------------------------------------------------- 233 (276)
..- ....++++++..
T Consensus 81 ~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 81 AKA----HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred HHH----HhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHH
Confidence 100 001223332221
Q ss_pred ---CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 ---GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ---~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+.| +|++||++
T Consensus 157 ~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~ 200 (510)
T PRK15439 157 RDSRILILDEPTA---SLTPAETERLFSRIRELLAQGVGIVFISHKL 200 (510)
T ss_pred cCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 1179999999 999999999999999998766 99999986
No 155
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.8e-15 Score=138.65 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=92.0
Q ss_pred ceeEEEecCC-----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~ 72 (287)
T PRK13637 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL------------KPTSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCccEEEECCEECC
Confidence 4556667753 24788898887 89999999999999999999999965 899999999998765
Q ss_pred ccccccCCCCceeeeEEEEecCCC--------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGG-------------------------------------------------------- 234 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~-------------------------------------------------------- 234 (276)
..+... +.....+++++|.+.
T Consensus 73 ~~~~~~---~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq 149 (287)
T PRK13637 73 DKKVKL---SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQ 149 (287)
T ss_pred CcCccH---HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHH
Confidence 421000 001233444443210
Q ss_pred ---------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 ---------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 ---------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+|+|||.. ++|......+.+.+.++.+. | +|++||++
T Consensus 150 ~qrv~iAraL~~~P~llllDEPt~---gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 205 (287)
T PRK13637 150 KRRVAIAGVVAMEPKILILDEPTA---GLDPKGRDEILNKIKELHKEYNMTIILVSHSM 205 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcc---CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 079999999 99999999999999999864 5 89999986
No 156
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.60 E-value=2.2e-15 Score=132.16 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=87.7
Q ss_pred ceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~ 72 (220)
T cd03245 5 FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY------------KPTSGSVLLDGTDIRQLD 72 (220)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCeEEECCEEhHHCC
Confidence 4556677754 34788888887 89999999999999999999999965 899999999886543211
Q ss_pred ------------cccCCCCcee-eeE-------------------EE-------------------Eec-----------
Q 023887 214 ------------TKSGRGKHTT-RHV-------------------SL-------------------LPL----------- 231 (276)
Q Consensus 214 ------------~~~g~gk~tt-~~~-------------------~~-------------------~~~----------- 231 (276)
..+..-..+- ..+ .+ ..+
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la 152 (220)
T cd03245 73 PADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA 152 (220)
T ss_pred HHHHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHH
Confidence 0000000000 000 00 000
Q ss_pred -----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 232 -----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 232 -----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
++..+|+|||.. ++|..+.+.+.+.+.++.+.. +|++||+++
T Consensus 153 ~al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~ 200 (220)
T cd03245 153 RALLNDPPILLLDEPTS---AMDMNSEERLKERLRQLLGDKTLIIITHRPS 200 (220)
T ss_pred HHHhcCCCEEEEeCccc---cCCHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 011289999999 999999999999999987644 999999863
No 157
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.1e-15 Score=138.35 Aligned_cols=124 Identities=19% Similarity=0.273 Sum_probs=92.7
Q ss_pred ceeEEEecCCc-----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|.|.. +|++|+|+++|.++.
T Consensus 4 ~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~ 71 (288)
T PRK13643 4 FEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL------------QPTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC------------CCCCcEEEECCEECc
Confidence 45667777532 3788888888 89999999999999999999999965 899999999998764
Q ss_pred ccccccCCCCceeeeEEEEecCCC--c-----------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGG--G----------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~--~----------------------------------------------------- 235 (276)
..+.... .....+.++++++.+. .
T Consensus 72 ~~~~~~~-~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqk 150 (288)
T PRK13643 72 STSKQKE-IKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQM 150 (288)
T ss_pred ccccccc-HHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHH
Confidence 2110000 0001233444444320 0
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|+|||.. ++|......+.+.+.++++.| ++++||+++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~---gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~ 205 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTA---GLDPKARIEMMQLFESIHQSGQTVVLVTHLMD 205 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCcc---CCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 79999999 999999999999999998766 999999863
No 158
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.4e-15 Score=137.34 Aligned_cols=121 Identities=18% Similarity=0.278 Sum_probs=92.5
Q ss_pred ceeEEEecCC------ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 137 YEPLFCSVES------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 137 ~~~~~~s~~~------~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++
T Consensus 7 ~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~i~g~~i 74 (280)
T PRK13633 7 CKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL------------IPSEGKVYVDGLDT 74 (280)
T ss_pred EeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEec
Confidence 4567777753 35889999888 89999999999999999999999965 89999999999876
Q ss_pred cccccccCCCCceeeeEEEEecCCC-------------------------------------------------------
Q 023887 210 GEVSTKSGRGKHTTRHVSLLPLSGG------------------------------------------------------- 234 (276)
Q Consensus 210 ~~vs~~~g~gk~tt~~~~~~~~~~~------------------------------------------------------- 234 (276)
...+.... ..+.++++++.+.
T Consensus 75 ~~~~~~~~----~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~ 150 (280)
T PRK13633 75 SDEENLWD----IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQK 150 (280)
T ss_pred cccccHHH----HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHH
Confidence 53211000 1223344333210
Q ss_pred --------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 --------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 --------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+|+|||.. ++|......+.+.+.++.++ + ++++||+++
T Consensus 151 qrv~laral~~~p~llllDEPt~---gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~ 206 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTA---MLDPSGRREVVNTIKELNKKYGITIILITHYME 206 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 079999999 99999999999999999764 5 899999864
No 159
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=2.3e-15 Score=133.28 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=86.3
Q ss_pred eeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 138 EPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 138 ~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
+.+.++|.+. ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 4 ~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 71 (234)
T cd03251 4 KNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY------------DVDSGRILIDGHDVRDYTL 71 (234)
T ss_pred EEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------cCCCCEEEECCEEhhhCCH
Confidence 4566667544 5788888887 89999999999999999999999965 8999999999876532110
Q ss_pred ccCCCCceeeeEEEEe--------------------------------------------------------c-------
Q 023887 215 KSGRGKHTTRHVSLLP--------------------------------------------------------L------- 231 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~--------------------------------------------------------~------- 231 (276)
.. ..+.+++++ +
T Consensus 72 ~~-----~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 146 (234)
T cd03251 72 AS-----LRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR 146 (234)
T ss_pred HH-----HHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence 00 000000000 0
Q ss_pred ---------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ---------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ---------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+++|||.. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 147 v~la~al~~~p~lllLDEP~~---~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 197 (234)
T cd03251 147 IAIARALLKDPPILILDEATS---ALDTESERLVQAALERLMKNRTTFVIAHRL 197 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccc---cCCHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 011279999999 999999999999999987532 99999986
No 160
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.59 E-value=2.9e-15 Score=135.13 Aligned_cols=119 Identities=23% Similarity=0.324 Sum_probs=89.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+..
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~p~~G~i~~~g~~~~~~~~~ 72 (258)
T PRK13548 5 ARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL------------SPDSGEVRLNGRPLADWSPA 72 (258)
T ss_pred EEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCEEcccCCHH
Confidence 455677777767899999888 89999999999999999999999965 89999999988654321100
Q ss_pred cCCCCceeeeEEEEe-----------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLP----------------------------------------------------------------- 230 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~----------------------------------------------------------------- 230 (276)
. ....+++++
T Consensus 73 ~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 73 E-----LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred H-----hhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHH
Confidence 0 000011111
Q ss_pred ---------cCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHh-hcc--eEEEeeeC
Q 023887 231 ---------LSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVC-AVG--LLYMIHML 275 (276)
Q Consensus 231 ---------~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~-~~~--ii~~~H~~ 275 (276)
..+..+++|||.. ++|....+.+.+.+.++. +.+ +|++||++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTS---ALDLAHQHHVLRLARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 1234478999999 999999999999999998 555 99999986
No 161
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=1.8e-15 Score=138.55 Aligned_cols=123 Identities=14% Similarity=0.236 Sum_probs=94.3
Q ss_pred ceeEEEecCC-----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~------------~p~~G~i~~~g~~i~ 72 (286)
T PRK13646 5 FDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL------------KPTTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEECc
Confidence 4566777753 24889999888 89999999999999999999999965 899999999998765
Q ss_pred ccccccCCCCceeeeEEEEecCCC--c-----------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGG--G----------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~--~----------------------------------------------------- 235 (276)
..+.... .+...+.++++++.+. .
T Consensus 73 ~~~~~~~-~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~ 151 (286)
T PRK13646 73 HKTKDKY-IRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQM 151 (286)
T ss_pred cccccch-HHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence 3211000 0112345555555321 0
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. ++|......+.+.+.++.+. | ++++||++
T Consensus 152 qrv~laraL~~~p~illlDEPt~---~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~ 206 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTA---GLDPQSKRQVMRLLKSLQTDENKTIILVSHDM 206 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 79999999 99999999999999999764 5 99999986
No 162
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.59 E-value=2.1e-15 Score=150.25 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=98.2
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|. |+|++|+|.++|.++..
T Consensus 342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl------------~~p~~G~I~i~g~~i~~ 409 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF------------YDIDEGEILLDGHDLRD 409 (582)
T ss_pred EEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc------------cCCCCceEEECCEEhhh
Confidence 445677788864 45799999988 8999999999999999999999994 59999999999998877
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .+..+++++|++..
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 410 YTLAS-----LRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred cCHHH-----HHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 65332 34556666665311
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+...+.+.+.++.+.. +|++||++
T Consensus 485 qrQRi~LARall~~~~ililDEpts---aLD~~t~~~i~~~l~~~~~~~tvI~VtHr~ 539 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATS---ALDTESERAIQAALDELQKNRTSLVIAHRL 539 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccc---cCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 79999999 999999999999998886544 99999986
No 163
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.3e-15 Score=145.85 Aligned_cols=121 Identities=22% Similarity=0.347 Sum_probs=104.8
Q ss_pred cCceeEEEecCCcc-chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.|+.+.++|+.+. .++++++.+ +|+++||+|+||+||||+||+|.+ ||+ .+|+|.++|+++.++
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr------------F~d-~sG~I~IdG~dik~~ 418 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR------------FFD-YSGSILIDGQDIKEV 418 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH------------Hhc-cCCcEEECCeeHhhh
Confidence 34677888998877 999999998 899999999999999999999998 668 999999999999999
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... +++.++++||+..+
T Consensus 419 ~~~S-----lR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGek 493 (591)
T KOG0057|consen 419 SLES-----LRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEK 493 (591)
T ss_pred ChHH-----hhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchH
Confidence 8654 88999999998533
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. .+|..+..++.+.+.+....- +|++.|+++
T Consensus 494 QrvslaRa~lKda~Il~~DEaTS---~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ 547 (591)
T KOG0057|consen 494 QRVSLARAFLKDAPILLLDEATS---ALDSETEREILDMIMDVMSGRTVIMIVHRLD 547 (591)
T ss_pred HHHHHHHHHhcCCCeEEecCccc---ccchhhHHHHHHHHHHhcCCCeEEEEEecch
Confidence 69999999 999999999999888833222 999999873
No 164
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.59 E-value=2.7e-15 Score=133.54 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=88.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 5 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 5 LEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT------------RPDEGSVLFGGTDLTGLPEH 72 (242)
T ss_pred EEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEECCeecCCCCHH
Confidence 345667776666788999888 89999999999999999999999965 89999999999765432110
Q ss_pred -------------cCCCCceee--eEEE------------------------------EecC------------------
Q 023887 216 -------------SGRGKHTTR--HVSL------------------------------LPLS------------------ 232 (276)
Q Consensus 216 -------------~g~gk~tt~--~~~~------------------------------~~~~------------------ 232 (276)
+..-.+.|- .+.+ +.+.
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv 152 (242)
T TIGR03411 73 QIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWL 152 (242)
T ss_pred HHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 000000000 0000 0000
Q ss_pred ---------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ---------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ---------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 153 ~laral~~~p~~lllDEPt~---~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 202 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVA---GMTDEETEKTAELLKSLAGKHSVVVVEHDM 202 (242)
T ss_pred HHHHHHhcCCCEEEecCCcc---CCCHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 00079999999 999999999999999997633 99999986
No 165
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.5e-15 Score=139.97 Aligned_cols=126 Identities=21% Similarity=0.312 Sum_probs=95.0
Q ss_pred CceeEEEecCCc-----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 136 GYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 136 ~~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
.++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++
T Consensus 23 ~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~------------~p~~G~I~i~g~~~ 90 (320)
T PRK13631 23 RVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI------------KSKYGTIQVGDIYI 90 (320)
T ss_pred EEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEECCEEc
Confidence 356677777542 4788888888 89999999999999999999999955 99999999999876
Q ss_pred cccc----------ccc-CCCCceeeeEEEEecCCC--c-----------------------------------------
Q 023887 210 GEVS----------TKS-GRGKHTTRHVSLLPLSGG--G----------------------------------------- 235 (276)
Q Consensus 210 ~~vs----------~~~-g~gk~tt~~~~~~~~~~~--~----------------------------------------- 235 (276)
+... ... ...+...+.++++++.+. .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 170 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYL 170 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHh
Confidence 5320 000 000112344555555421 1
Q ss_pred ---------------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ---------------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ---------------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+|+|+|.. ++|..+...+.+.+.++.+.+ +|++||+++
T Consensus 171 ~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPts---gLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~ 237 (320)
T PRK13631 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTA---GLDPKGEHEMMQLILDAKANNKTVFVITHTME 237 (320)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc---CCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 79999999 999999999999999997766 999999863
No 166
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.59 E-value=2.2e-15 Score=148.60 Aligned_cols=121 Identities=21% Similarity=0.304 Sum_probs=99.9
Q ss_pred cCceeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.+. ..++++++.+ +|++++++|+||+|||||+|+|+| +|+|++|+|.++|.++.+
T Consensus 321 i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g------------~~~~~~G~I~~~g~~i~~ 388 (529)
T TIGR02857 321 LEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLG------------FVDPTEGSIAVNGVPLAD 388 (529)
T ss_pred EEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEehhh
Confidence 4567788888653 5799999988 899999999999999999999999 559999999999998887
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++..
T Consensus 389 ~~~~~-----lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq 463 (529)
T TIGR02857 389 ADADS-----WRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQ 463 (529)
T ss_pred CCHHH-----HHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHH
Confidence 65432 45567777776422
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 464 ~qri~laRal~~~~~ililDE~ts---~lD~~~~~~i~~~l~~~~~~~t~i~itH~~ 517 (529)
T TIGR02857 464 AQRLALARAFLRDAPLLLLDEPTA---HLDAETEALVTEALRALAQGRTVLLVTHRL 517 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccc---ccCHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 79999999 999999999999998886433 99999986
No 167
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.59 E-value=3.6e-15 Score=130.92 Aligned_cols=120 Identities=21% Similarity=0.223 Sum_probs=88.7
Q ss_pred CceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 136 ~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...
T Consensus 4 ~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~ 71 (221)
T cd03244 4 EFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV------------ELSSGSILIDGVDISKI 71 (221)
T ss_pred EEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCCEEEECCEEhHhC
Confidence 34567777753 35889999988 89999999999999999999999965 89999999998765431
Q ss_pred ccccCCCCceeeeEEEEecC------------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLS------------------------------------------------------------ 232 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~------------------------------------------------------------ 232 (276)
.... ..+.++++++.
T Consensus 72 ~~~~-----~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q 146 (221)
T cd03244 72 GLHD-----LRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ 146 (221)
T ss_pred CHHH-----HhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence 1100 00011111110
Q ss_pred -----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 -----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 -----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|+|.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 147 r~~laral~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 198 (221)
T cd03244 147 LLCLARALLRKSKILVLDEATA---SVDPETDALIQKTIREAFKDCTVLTIAHRL 198 (221)
T ss_pred HHHHHHHHhcCCCEEEEeCccc---cCCHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 11279999999 999999999999999986533 99999986
No 168
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=2.6e-15 Score=137.65 Aligned_cols=124 Identities=21% Similarity=0.274 Sum_probs=91.3
Q ss_pred ceeEEEecCC-----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|+++.
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~ 72 (287)
T PRK13641 5 FENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL------------KPSSGTITIAGYHIT 72 (287)
T ss_pred EEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEECc
Confidence 4566777753 24788888887 89999999999999999999999966 899999999998764
Q ss_pred ccccccCCCCceeeeEEEEecCCC--------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGG-------------------------------------------------------- 234 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~-------------------------------------------------------- 234 (276)
....... .+.....++++++.+.
T Consensus 73 ~~~~~~~-~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 73 PETGNKN-LKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQM 151 (287)
T ss_pred cccccch-HHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHH
Confidence 2100000 0001122333333210
Q ss_pred --------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 235 --------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 235 --------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+|+|||.. ++|....+.+.+.+.++.+.| ++++||+++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~---gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~ 206 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAA---GLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD 206 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 079999999 999999999999999997666 899999863
No 169
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.58 E-value=2.8e-15 Score=149.69 Aligned_cols=121 Identities=24% Similarity=0.366 Sum_probs=100.6
Q ss_pred cCceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+| +|+|++|+|.++|.++.++
T Consensus 335 I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~g------------l~~p~~G~I~i~g~~i~~~ 402 (588)
T PRK13657 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQR------------VFDPQSGRILIDGTDIRTV 402 (588)
T ss_pred EEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCCEEEECCEEhhhC
Confidence 445677888864 45799999988 899999999999999999999999 5699999999999988876
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.+++++|++..
T Consensus 403 ~~~~-----~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 403 TRAS-----LRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred CHHH-----HHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 6433 55677888776532
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 478 QRialARall~~~~iliLDEpts---~LD~~t~~~i~~~l~~~~~~~tvIiitHr~ 530 (588)
T PRK13657 478 QRLAIARALLKDPPILILDEATS---ALDVETEAKVKAALDELMKGRTTFIIAHRL 530 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHhcCCEEEEEEecH
Confidence 69999999 999999999999888875533 99999985
No 170
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.58 E-value=2.3e-15 Score=150.26 Aligned_cols=120 Identities=30% Similarity=0.318 Sum_probs=99.8
Q ss_pred cCceeEEE-ecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFC-SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~-s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.+ ++.+...++++++.+ +|++++|+|+||+|||||+++|+| +| |++|+|.++|.++.++
T Consensus 350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g------------~~-p~~G~I~i~g~~i~~~ 416 (588)
T PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG------------FL-PYQGSLKINGIELREL 416 (588)
T ss_pred EEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CC-CCCcEEEECCEecccC
Confidence 44555644 344556799999988 899999999999999999999999 77 8999999999999887
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++++++++|++..
T Consensus 417 ~~~~-----lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 417 DPES-----WRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred CHHH-----HHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 6543 66788888887522
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+|+|||+. ++|..+.+.+.+.+.++.+.- +|++||.+
T Consensus 492 QRialARAll~~~~IliLDE~TS---aLD~~te~~i~~~l~~~~~~~TvIiItHrl 544 (588)
T PRK11174 492 QRLALARALLQPCQLLLLDEPTA---SLDAHSEQLVMQALNAASRRQTTLMVTHQL 544 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 79999999 999999999999998886533 99999975
No 171
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.58 E-value=3.5e-15 Score=132.40 Aligned_cols=123 Identities=19% Similarity=0.257 Sum_probs=86.2
Q ss_pred ceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.+.|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+
T Consensus 3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~ 70 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY------------VPENGRVLVDGHDLALAD 70 (237)
T ss_pred EEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECCeehHhcC
Confidence 3456666653 34788888887 89999999999999999999999965 899999999987643211
Q ss_pred c------------ccC-----------CC-Cceee-e-------EE-------------------EEec-----------
Q 023887 214 T------------KSG-----------RG-KHTTR-H-------VS-------------------LLPL----------- 231 (276)
Q Consensus 214 ~------------~~g-----------~g-k~tt~-~-------~~-------------------~~~~----------- 231 (276)
. ... .. +..+. . .. ...+
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~la 150 (237)
T cd03252 71 PAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIA 150 (237)
T ss_pred HHHHhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHH
Confidence 0 000 00 00000 0 00 0000
Q ss_pred -----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 -----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 -----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
++..+|+|||.. ++|....+.+.+.+.++.+ + ++++||++
T Consensus 151 ral~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~ 197 (237)
T cd03252 151 RALIHNPRILIFDEATS---ALDYESEHAIMRNMHDICA-GRTVIIIAHRL 197 (237)
T ss_pred HHHhhCCCEEEEeCCcc---cCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH
Confidence 011179999999 9999999999999999875 5 89999986
No 172
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=3e-15 Score=142.40 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=96.5
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|..+....+
T Consensus 21 ~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~------------~p~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 21 EIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE------------QPTAGQIMLDGVDLSHVPP 88 (377)
T ss_pred EEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECCCCCH
Confidence 3456777776666788888888 89999999999999999999999966 8999999999987754321
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|+...
T Consensus 89 -------~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 89 -------YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALA 161 (377)
T ss_pred -------HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 23567777776422
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|...++.+.+.+.++.+. + +|++|||+
T Consensus 162 RAL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 210 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMG---ALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ 210 (377)
T ss_pred HHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 79999999 99999999999888888653 5 99999986
No 173
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.58 E-value=4.4e-15 Score=132.23 Aligned_cols=117 Identities=19% Similarity=0.216 Sum_probs=92.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.....
T Consensus 3 i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~i~g~~~~~~~~- 69 (237)
T TIGR00968 3 IANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE------------QPDSGRIRLNGQDATRVHA- 69 (237)
T ss_pred EEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEEcCcCCh-
Confidence 345667777667888888887 89999999999999999999999955 8999999999987643211
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+.++++++.+..
T Consensus 70 ------~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~lar 143 (237)
T TIGR00968 70 ------RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALAR 143 (237)
T ss_pred ------hhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence 12234444433211
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|+|.. ++|....+.+.+.+.++.+. + ++++||++
T Consensus 144 al~~~p~llllDEP~~---~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~ 191 (237)
T TIGR00968 144 ALAVEPQVLLLDEPFG---ALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ 191 (237)
T ss_pred HHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 99999999999999999875 4 99999985
No 174
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.58 E-value=3.5e-15 Score=132.51 Aligned_cols=123 Identities=19% Similarity=0.258 Sum_probs=86.1
Q ss_pred eeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 138 EPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 138 ~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+.+.+.|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+
T Consensus 4 ~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~~~~ 71 (238)
T cd03249 4 KNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY------------DPTSGEILLDGVDIRDLN 71 (238)
T ss_pred EEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC------------CCCCCEEEECCEehhhcC
Confidence 455666643 24688888887 89999999999999999999999965 899999999986653211
Q ss_pred ccc-------------------------CCCCceeee-------EEE-------------------Eec-----------
Q 023887 214 TKS-------------------------GRGKHTTRH-------VSL-------------------LPL----------- 231 (276)
Q Consensus 214 ~~~-------------------------g~gk~tt~~-------~~~-------------------~~~----------- 231 (276)
... +........ ..+ ..+
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 151 (238)
T cd03249 72 LRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIA 151 (238)
T ss_pred HHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHH
Confidence 000 000000000 000 000
Q ss_pred -----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 232 -----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 232 -----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+..+++|||.. ++|....+.+.+.+.++. ++ ++++||+++
T Consensus 152 ~al~~~p~llllDEP~~---gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~ 199 (238)
T cd03249 152 RALLRNPKILLLDEATS---ALDAESEKLVQEALDRAM-KGRTTIVIAHRLS 199 (238)
T ss_pred HHHhcCCCEEEEeCccc---cCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH
Confidence 012279999999 999999999999999987 55 899999863
No 175
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=3e-15 Score=137.49 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=93.1
Q ss_pred ceeEEEecCC-----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|+++.
T Consensus 5 ~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~ 72 (290)
T PRK13634 5 FQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL------------QPTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECCEECc
Confidence 4567777753 34788898888 89999999999999999999999966 899999999998764
Q ss_pred ccccccCCCCceeeeEEEEecCCC--c-----------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGG--G----------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~--~----------------------------------------------------- 235 (276)
....... .+...+.++++++.+. .
T Consensus 73 ~~~~~~~-~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~ 151 (290)
T PRK13634 73 AGKKNKK-LKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQM 151 (290)
T ss_pred cccccch-HHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHH
Confidence 2100000 0001233444444320 0
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. ++|......+.+.+.++.+. | +|++||+++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~---~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~ 207 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTA---GLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME 207 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999764 5 999999863
No 176
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=3.4e-15 Score=136.13 Aligned_cols=120 Identities=17% Similarity=0.194 Sum_probs=92.6
Q ss_pred ceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 137 YEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
++.+.++|.+. ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...
T Consensus 7 ~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~i~~~ 74 (277)
T PRK13642 7 VENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF------------EEFEGKVKIDGELLTAE 74 (277)
T ss_pred EEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCCEEEECCEECCcC
Confidence 45667777532 3688888887 89999999999999999999999965 89999999999876532
Q ss_pred ccccCCCCceeeeEEEEecCCC-c--------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGG-G-------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~-~-------------------------------------------------------- 235 (276)
+... ....++++++.+. .
T Consensus 75 ~~~~-----~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 149 (277)
T PRK13642 75 NVWN-----LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRV 149 (277)
T ss_pred CHHH-----HhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHH
Confidence 2110 1233444444321 0
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. ++|....+.+.+.+.++.+. | ++++||+++
T Consensus 150 ~lAraL~~~p~llllDEPt~---~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 150 AVAGIIALRPEIIILDESTS---MLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999874 5 999999863
No 177
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.58 E-value=3e-15 Score=146.94 Aligned_cols=121 Identities=19% Similarity=0.257 Sum_probs=90.1
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+..
T Consensus 7 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~~ 74 (501)
T PRK10762 7 LKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY------------TRDAGSILYLGKEVTFNGPK 74 (501)
T ss_pred EeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCHH
Confidence 456777787667899999988 89999999999999999999999965 89999999998765321100
Q ss_pred cCCCCceeeeEEEEecC---------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLS--------------------------------------------------------------- 232 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~--------------------------------------------------------------- 232 (276)
.. ..+.++++++.
T Consensus 75 ~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 150 (501)
T PRK10762 75 SS----QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMV 150 (501)
T ss_pred HH----HhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHH
Confidence 00 00001110000
Q ss_pred ---------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 ---------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 ---------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.+ +|++||+++
T Consensus 151 ~la~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~ 202 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTD---ALTDTETESLFRVIRELKSQGRGIVYISHRLK 202 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcC---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 01179999999 999999999999999997765 999999863
No 178
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.58 E-value=2.8e-15 Score=152.49 Aligned_cols=122 Identities=17% Similarity=0.293 Sum_probs=100.6
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. ...++++++.+ +|++++++|+||+|||||+++|+| +|+|++|+|.++|.++..
T Consensus 464 I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~g------------l~~p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG------------LYQPTEGSVLLDGVDIRQ 531 (694)
T ss_pred EEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEEhhh
Confidence 456778888863 35799999998 899999999999999999999999 569999999999998887
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++..
T Consensus 532 ~~~~~-----lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQ 606 (694)
T TIGR03375 532 IDPAD-----LRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ 606 (694)
T ss_pred CCHHH-----HHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHH
Confidence 65433 45566666665321
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||+++
T Consensus 607 rQRlalARall~~p~iliLDE~Ts---~LD~~te~~i~~~l~~~~~~~T~iiItHrl~ 661 (694)
T TIGR03375 607 RQAVALARALLRDPPILLLDEPTS---AMDNRSEERFKDRLKRWLAGKTLVLVTHRTS 661 (694)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 79999999 999999999999999887544 999999863
No 179
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.58 E-value=5.3e-15 Score=128.79 Aligned_cols=120 Identities=21% Similarity=0.211 Sum_probs=89.7
Q ss_pred CceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 136 GYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 136 ~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...
T Consensus 8 ~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~ 75 (207)
T cd03369 8 EVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL------------EAEEGKIEIDGIDISTI 75 (207)
T ss_pred EEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCCeEEECCEEhHHC
Confidence 45667777764 35788888887 89999999999999999999999955 89999999999776432
Q ss_pred ccccCCCCceeeeEEEEecCC-----------------------------------------------------CcEEEe
Q 023887 213 STKSGRGKHTTRHVSLLPLSG-----------------------------------------------------GGYLAD 239 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~-----------------------------------------------------~~~iiD 239 (276)
.... ....++++++.+ ..+|+|
T Consensus 76 ~~~~-----~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllD 150 (207)
T cd03369 76 PLED-----LRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLD 150 (207)
T ss_pred CHHH-----HHhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 2110 111222222211 117999
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+|.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 151 EP~~---~LD~~~~~~l~~~l~~~~~~~tiii~th~~ 184 (207)
T cd03369 151 EATA---SIDYATDALIQKTIREEFTNSTILTIAHRL 184 (207)
T ss_pred CCcc---cCCHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 9999 999999999999999986422 89999986
No 180
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.58 E-value=3e-15 Score=152.12 Aligned_cols=120 Identities=23% Similarity=0.334 Sum_probs=100.0
Q ss_pred cCceeEEEecC--CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|. +...++++++.+ +|++++++|+||+|||||+|+|+| +|+|++|+|.++|.++.+
T Consensus 452 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g------------l~~p~~G~I~idg~~i~~ 519 (686)
T TIGR03797 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG------------FETPESGSVFYDGQDLAG 519 (686)
T ss_pred EEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCCEEEECCEEcCc
Confidence 45677888884 346899999998 899999999999999999999999 569999999999999887
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++++++++|++..
T Consensus 520 ~~~~~-----lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr 594 (686)
T TIGR03797 520 LDVQA-----VRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594 (686)
T ss_pred CCHHH-----HHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 76443 56677787776422
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++. .-+|++||.+
T Consensus 595 QRialARAll~~p~iLiLDEpTS---~LD~~te~~i~~~L~~~~-~T~IiItHr~ 645 (686)
T TIGR03797 595 QRLLIARALVRKPRILLFDEATS---ALDNRTQAIVSESLERLK-VTRIVIAHRL 645 (686)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHhC-CeEEEEecCh
Confidence 69999999 999999999988888762 2399999975
No 181
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=6.1e-15 Score=132.02 Aligned_cols=129 Identities=20% Similarity=0.226 Sum_probs=87.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc-
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST- 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~- 214 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... ....|++|+|.++|.++...+.
T Consensus 6 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-------~~~~~~~G~i~~~g~~i~~~~~~ 78 (250)
T PRK14247 6 IRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL-------YPEARVSGEVYLDGQDIFKMDVI 78 (250)
T ss_pred EEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-------CCCCCCceEEEECCEECCcCCHH
Confidence 456677777667889999988 8999999999999999999999996510 0001579999998876532110
Q ss_pred -----------ccCCCCcee-----------------------------eeEEE-------E-----ec-----------
Q 023887 215 -----------KSGRGKHTT-----------------------------RHVSL-------L-----PL----------- 231 (276)
Q Consensus 215 -----------~~g~gk~tt-----------------------------~~~~~-------~-----~~----------- 231 (276)
.+..-...| ....+ . .+
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 158 (250)
T PRK14247 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA 158 (250)
T ss_pred HHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence 000000000 00000 0 00
Q ss_pred -----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+++|||.. ++|....+.+.+.+.++.+.. ++++||++
T Consensus 159 ral~~~p~lllLDEP~~---~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 205 (250)
T PRK14247 159 RALAFQPEVLLADEPTA---NLDPENTAKIESLFLELKKDMTIVLVTHFP 205 (250)
T ss_pred HHHhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 011179999999 999999999999999986522 99999986
No 182
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=4.3e-15 Score=137.59 Aligned_cols=124 Identities=18% Similarity=0.215 Sum_probs=93.4
Q ss_pred ceeEEEecCCc-----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.+..
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~------------~p~~G~i~~~g~~~~ 72 (305)
T PRK13651 5 VKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL------------LPDTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEEeceecc
Confidence 45667777542 4788899888 89999999999999999999999965 899999999876542
Q ss_pred cccc-------------c-----cC-CCCceeeeEEEEecCCC--c----------------------------------
Q 023887 211 EVST-------------K-----SG-RGKHTTRHVSLLPLSGG--G---------------------------------- 235 (276)
Q Consensus 211 ~vs~-------------~-----~g-~gk~tt~~~~~~~~~~~--~---------------------------------- 235 (276)
..+. . .. ..+...+.+++++|++. .
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELV 152 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHc
Confidence 1100 0 00 00112345666666421 0
Q ss_pred ----------------------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ----------------------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ----------------------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+|+|||.. ++|....+.+.+.+.++++.| +|++||++
T Consensus 153 gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 225 (305)
T PRK13651 153 GLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTA---GLDPQGVKEILEIFDNLNKQGKTIILVTHDL 225 (305)
T ss_pred CCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH
Confidence 79999999 999999999999999998766 89999986
No 183
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.57 E-value=5.2e-15 Score=134.47 Aligned_cols=126 Identities=19% Similarity=0.130 Sum_probs=89.9
Q ss_pred cCceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc-
Q 023887 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE- 211 (276)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~- 211 (276)
+.++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 7 l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~ 74 (272)
T PRK15056 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV------------RLASGKISILGQPTRQA 74 (272)
T ss_pred EEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEhHHh
Confidence 34567778884 456789999888 89999999999999999999999965 8999999999865421
Q ss_pred --------cccccCC-C-Ccee-e-eEEE--E------ecC---------------------------------------
Q 023887 212 --------VSTKSGR-G-KHTT-R-HVSL--L------PLS--------------------------------------- 232 (276)
Q Consensus 212 --------vs~~~g~-g-k~tt-~-~~~~--~------~~~--------------------------------------- 232 (276)
+...+.. . ...+ . .+.+ + ...
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~la 154 (272)
T PRK15056 75 LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLA 154 (272)
T ss_pred hccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 1111100 0 0000 0 0000 0 000
Q ss_pred ------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 ------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 155 raL~~~p~llllDEPt~---~LD~~~~~~l~~~L~~~~~~g~tviivsH~~ 202 (272)
T PRK15056 155 RAIAQQGQVILLDEPFT---GVDVKTEARIISLLRELRDEGKTMLVSTHNL 202 (272)
T ss_pred HHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 00079999999 999999999999999998766 99999986
No 184
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=5.4e-15 Score=135.50 Aligned_cols=125 Identities=15% Similarity=0.182 Sum_probs=90.1
Q ss_pred CceeEEEecCCc-----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 136 GYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 136 ~~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
.++.+.++|.+. ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++
T Consensus 8 ~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i 75 (289)
T PRK13645 8 ILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI------------ISETGQTIVGDYAI 75 (289)
T ss_pred EEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCEEc
Confidence 356677777653 3788998888 89999999999999999999999965 89999999998765
Q ss_pred cccccccCCCCceeeeEEEEecCCC-------------------------------------------------------
Q 023887 210 GEVSTKSGRGKHTTRHVSLLPLSGG------------------------------------------------------- 234 (276)
Q Consensus 210 ~~vs~~~g~gk~tt~~~~~~~~~~~------------------------------------------------------- 234 (276)
................++++++...
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq 155 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQ 155 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHH
Confidence 3100000000001122333332210
Q ss_pred ---------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 ---------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 ---------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+|+|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 156 ~qrv~laral~~~p~lLlLDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~ 211 (289)
T PRK13645 156 KRRVALAGIIAMDGNTLVLDEPTG---GLDPKGEEDFINLFERLNKEYKKRIIMVTHNM 211 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 079999999 99999999999999998763 5 99999986
No 185
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.57 E-value=7.2e-15 Score=128.61 Aligned_cols=114 Identities=26% Similarity=0.318 Sum_probs=84.8
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|.. .+.++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+.
T Consensus 4 ~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~-- 67 (213)
T TIGR01277 4 DKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI------------EPASGSIKVNDQSHTGLAP-- 67 (213)
T ss_pred EeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEcccCCh--
Confidence 445555542 345666666 89999999999999999999999965 8999999999986543110
Q ss_pred CCCCceeeeEEEEecCCC--------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGG-------------------------------------------------------------- 234 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~-------------------------------------------------------------- 234 (276)
..+.++++++...
T Consensus 68 -----~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 68 -----YQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARC 142 (213)
T ss_pred -----hccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHH
Confidence 1112222222210
Q ss_pred ------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 ------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 ------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+++|+|.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 143 l~~~p~llllDEPt~---~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~ 189 (213)
T TIGR01277 143 LVRPNPILLLDEPFS---ALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189 (213)
T ss_pred HhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 079999999 99999999999999999764 4 89999985
No 186
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=4.3e-15 Score=135.93 Aligned_cols=121 Identities=18% Similarity=0.244 Sum_probs=93.2
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.....
T Consensus 8 ~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~------------~p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 8 VEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL------------KPSSGRILFDGKPIDYSRK 75 (283)
T ss_pred EEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCccEEEECCEECCCCcc
Confidence 456777775 456889999888 89999999999999999999999965 8999999999987631100
Q ss_pred ccCCCCceeeeEEEEecCCC--c---------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGG--G--------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~--~--------------------------------------------------------- 235 (276)
. .+.....++++++.+. .
T Consensus 76 ~---~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 76 G---LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAI 152 (283)
T ss_pred h---HHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHH
Confidence 0 0012234455544321 0
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|......+.+.+.++.+. | ++++||++
T Consensus 153 araL~~~p~lLilDEPt~---gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~ 202 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTA---GLDPMGVSEIMKLLVEMQKELGLTIIIATHDI 202 (283)
T ss_pred HHHHHcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 79999999 99999999999999999864 5 99999986
No 187
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=4.6e-15 Score=131.46 Aligned_cols=123 Identities=24% Similarity=0.344 Sum_probs=86.9
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.....
T Consensus 3 ~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~v~~~g~~~~~~~~ 70 (236)
T cd03253 3 FENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY------------DVSSGSILIDGQDIREVTL 70 (236)
T ss_pred EEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CCCCCEEEECCEEhhhCCH
Confidence 345666674 345788888887 89999999999999999999999965 8999999999876532110
Q ss_pred ------------cc-------------CCCCceeee-------EEE------E-------------ecC-----------
Q 023887 215 ------------KS-------------GRGKHTTRH-------VSL------L-------------PLS----------- 232 (276)
Q Consensus 215 ------------~~-------------g~gk~tt~~-------~~~------~-------------~~~----------- 232 (276)
.. +........ ..+ + .++
T Consensus 71 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~ 150 (236)
T cd03253 71 DSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIAR 150 (236)
T ss_pred HHHHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHH
Confidence 00 000000000 000 0 010
Q ss_pred -----CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 -----GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 -----~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+ + +|++||++
T Consensus 151 aL~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~ 196 (236)
T cd03253 151 AILKNPPILLLDEATS---ALDTHTEREIQAALRDVSK-GRTTIVIAHRL 196 (236)
T ss_pred HHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH
Confidence 11289999999 9999999999999999877 6 89999986
No 188
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=4.2e-15 Score=129.62 Aligned_cols=124 Identities=25% Similarity=0.327 Sum_probs=93.7
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++......++++++.+ +|+..+|+||||+|||||+++|+|.. .|++|++.++|.+....+...
T Consensus 5 ~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel------------~p~~G~v~~~g~~l~~~~~~~ 72 (259)
T COG4559 5 ENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL------------SPDSGEVTLNGVPLNSWPPEE 72 (259)
T ss_pred eeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc------------CCCCCeEeeCCcChhhCCHHH
Confidence 45677777888899999987 89999999999999999999999987 899999999998876633221
Q ss_pred --------------------------CCCCcee-----ee------------------EEEEecCC--------------
Q 023887 217 --------------------------GRGKHTT-----RH------------------VSLLPLSG-------------- 233 (276)
Q Consensus 217 --------------------------g~gk~tt-----~~------------------~~~~~~~~-------------- 233 (276)
|+-+|.+ .+ ..|-.+++
T Consensus 73 lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred HHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHH
Confidence 0000100 00 00000000
Q ss_pred --------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 --------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 --------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+.+++|||.. .+|...+....++.++|...| ++.+-||+|
T Consensus 153 l~~~v~~~r~L~LDEPts---aLDi~HQ~~tl~laR~la~~g~~V~~VLHDLN 202 (259)
T COG4559 153 LWPPVPSGRWLFLDEPTS---ALDIAHQHHTLRLARQLAREGGAVLAVLHDLN 202 (259)
T ss_pred ccCCCCCCceEEecCCcc---ccchHHHHHHHHHHHHHHhcCCcEEEEEccch
Confidence 0169999999 999888999999999999886 999999987
No 189
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.57 E-value=5.6e-15 Score=133.91 Aligned_cols=119 Identities=22% Similarity=0.231 Sum_probs=87.7
Q ss_pred ceeEEEecCC---------ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 137 YEPLFCSVES---------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~~---------~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~g 74 (267)
T PRK15112 7 VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI------------EPTSGELLIDD 74 (267)
T ss_pred EeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC------------CCCCCEEEECC
Confidence 3456666642 24788888888 89999999999999999999999965 89999999998
Q ss_pred ccccccccccCCCCceeeeEEEEecCC-----------------------------------------------------
Q 023887 207 QRVGEVSTKSGRGKHTTRHVSLLPLSG----------------------------------------------------- 233 (276)
Q Consensus 207 ~~~~~vs~~~g~gk~tt~~~~~~~~~~----------------------------------------------------- 233 (276)
.++....... ....++++++..
T Consensus 75 ~~~~~~~~~~-----~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 149 (267)
T PRK15112 75 HPLHFGDYSY-----RSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHM 149 (267)
T ss_pred EECCCCchhh-----HhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchh
Confidence 7654211000 001112211110
Q ss_pred -------------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 -------------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 -------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 150 LS~G~~qrv~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~ 210 (267)
T PRK15112 150 LAPGQKQRLGLARALILRPKVIIADEALA---SLDMSMRSQLINLMLELQEKQGISYIYVTQHL 210 (267)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH
Confidence 0079999999 99999999999999999764 5 89999986
No 190
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=4.7e-15 Score=135.12 Aligned_cols=123 Identities=19% Similarity=0.263 Sum_probs=88.5
Q ss_pred ceeEEEecCC-----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~i~ 72 (280)
T PRK13649 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH------------VPTQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEcc
Confidence 3556677753 24788888887 89999999999999999999999965 899999999987654
Q ss_pred ccccccCCCCceeeeEEEEecCC---------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSG--------------------------------------------------------- 233 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~--------------------------------------------------------- 233 (276)
..+.... .+...+.++++++..
T Consensus 73 ~~~~~~~-~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 151 (280)
T PRK13649 73 STSKNKD-IKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQM 151 (280)
T ss_pred ccccccC-HHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence 3210000 000011122222110
Q ss_pred -------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 -------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 -------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 205 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTA---GLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEeccH
Confidence 0179999999 999999999999999997655 99999986
No 191
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.57 E-value=4.9e-15 Score=130.31 Aligned_cols=122 Identities=20% Similarity=0.199 Sum_probs=89.4
Q ss_pred eeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 138 EPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 138 ~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.+.+.|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...
T Consensus 5 ~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~------------~~~~G~i~~~g~~~~~~ 72 (220)
T TIGR02982 5 RNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR------------SVQEGSLKVLGQELYGA 72 (220)
T ss_pred EEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCEEhHhc
Confidence 445566653 44788888887 89999999999999999999999955 89999999999876532
Q ss_pred ccccCCCCceeeeEEEEecCCC----------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGG---------------------------------------------------------- 234 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~---------------------------------------------------------- 234 (276)
+.... ......++++++...
T Consensus 73 ~~~~~--~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 73 SEKEL--VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRV 150 (220)
T ss_pred CHhHH--HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHH
Confidence 21000 001112222222110
Q ss_pred -----------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 -----------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 -----------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+++|||.. ++|......+.+.+.++.+. + +|++||+++
T Consensus 151 ~laral~~~p~illlDEP~~---~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTA---ALDSKSGRDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 079999999 99999999999999999863 4 999999863
No 192
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=4.8e-15 Score=134.98 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=92.1
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~~~~~~~ 71 (275)
T PRK13639 4 TRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL------------KPTSGEVLIKGEPIKYDKK 71 (275)
T ss_pred EEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCccEEEECCEECccccc
Confidence 456677775 345788888888 89999999999999999999999965 8999999999987631110
Q ss_pred ccCCCCceeeeEEEEecCCC------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGG------------------------------------------------------------ 234 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~------------------------------------------------------------ 234 (276)
. .+.....+++++++..
T Consensus 72 -~--~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 72 -S--LLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAI 148 (275)
T ss_pred -h--HHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHH
Confidence 0 0001233444444310
Q ss_pred ---------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 235 ---------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 235 ---------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+++|||.. ++|......+.+.+.++.+.+ ++++||+++
T Consensus 149 aral~~~p~llllDEPt~---gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~ 198 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTS---GLDPMGASQIMKLLYDLNKEGITIIISTHDVD 198 (275)
T ss_pred HHHHhcCCCEEEEeCCCc---CCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 079999999 999999999999999998655 999999863
No 193
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.8e-15 Score=145.10 Aligned_cols=122 Identities=19% Similarity=0.240 Sum_probs=87.8
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc----
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS---- 213 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs---- 213 (276)
.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+
T Consensus 3 nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~~~ 70 (491)
T PRK10982 3 NISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY------------QKDSGSILFQGKEIDFKSSKEA 70 (491)
T ss_pred ceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCceEEEECCEECCCCCHHHH
Confidence 4566776667889999888 89999999999999999999999965 899999999997653211
Q ss_pred ---------cccCCCCcee--eeEEE--E-----------------------ecC-------------------------
Q 023887 214 ---------TKSGRGKHTT--RHVSL--L-----------------------PLS------------------------- 232 (276)
Q Consensus 214 ---------~~~g~gk~tt--~~~~~--~-----------------------~~~------------------------- 232 (276)
.....-...| ..+.+ . .+.
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 71 LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 0000000000 00000 0 000
Q ss_pred --CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 --GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 --~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 151 ~~p~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~ 194 (491)
T PRK10982 151 YNAKIVIMDEPTS---SLTEKEVNHLFTIIRKLKERGCGIVYISHKM 194 (491)
T ss_pred hCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 00179999999 999999999999999998766 99999986
No 194
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.57 E-value=3.9e-15 Score=151.80 Aligned_cols=121 Identities=18% Similarity=0.256 Sum_probs=98.5
Q ss_pred cCceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+| +|+|++|+|.++|.++.++
T Consensus 474 I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~g------------l~~p~~G~I~idg~~i~~~ 541 (708)
T TIGR01193 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVG------------FFQARSGEILLNGFSLKDI 541 (708)
T ss_pred EEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCcEEEECCEEHHHc
Confidence 44677888886 346799999988 899999999999999999999999 5699999999999998876
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.+++++|++..
T Consensus 542 ~~~~-----lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ 616 (708)
T TIGR01193 542 DRHT-----LRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616 (708)
T ss_pred CHHH-----HHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence 6433 45566777665311
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++...-+|++||++
T Consensus 617 rQRialARall~~p~iliLDE~Ts---~LD~~te~~i~~~L~~~~~~T~IiitHr~ 669 (708)
T TIGR01193 617 KQRIALARALLTDSKVLILDESTS---NLDTITEKKIVNNLLNLQDKTIIFVAHRL 669 (708)
T ss_pred HHHHHHHHHHhhCCCEEEEeCccc---cCCHHHHHHHHHHHHHhcCCEEEEEecch
Confidence 79999999 99999999998888876322289999986
No 195
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.57 E-value=5.6e-15 Score=133.70 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=88.5
Q ss_pred ceeEEEecC---------CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 137 YEPLFCSVE---------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~---------~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g 72 (265)
T TIGR02769 5 VRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE------------KPAQGTVSFRG 72 (265)
T ss_pred EEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECC
Confidence 345566664 245788999888 89999999999999999999999965 89999999999
Q ss_pred ccccccccccCCCCceeeeEEEEecCC-----------------------------------------------------
Q 023887 207 QRVGEVSTKSGRGKHTTRHVSLLPLSG----------------------------------------------------- 233 (276)
Q Consensus 207 ~~~~~vs~~~g~gk~tt~~~~~~~~~~----------------------------------------------------- 233 (276)
.++...+.... ....+.++++++..
T Consensus 73 ~~i~~~~~~~~--~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 150 (265)
T TIGR02769 73 QDLYQLDRKQR--RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQ 150 (265)
T ss_pred EEccccCHHHH--HHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhh
Confidence 76543211000 00001112111110
Q ss_pred -------------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 -------------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 -------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 151 LSgGe~qrv~laral~~~p~illLDEPt~---~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 211 (265)
T TIGR02769 151 LSGGQLQRINIARALAVKPKLIVLDEAVS---NLDMVLQAVILELLRKLQQAFGTAYLFITHDL 211 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 0079999999 99999999999999999864 5 99999986
No 196
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=8.3e-15 Score=128.20 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=86.8
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
.+.++|++... ++++.+ + ++++|+|+||+|||||+++|+|.. +|++|+|.++|.++........
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~~~ 69 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE------------KPDGGTIVLNGTVLFDSRKKIN 69 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEecccccchhh
Confidence 35667766543 788877 7 999999999999999999999965 8999999999976542111000
Q ss_pred CCCceeeeEEEEecCCCc--------------------------------------------------------------
Q 023887 218 RGKHTTRHVSLLPLSGGG-------------------------------------------------------------- 235 (276)
Q Consensus 218 ~gk~tt~~~~~~~~~~~~-------------------------------------------------------------- 235 (276)
. +...+.++++++....
T Consensus 70 ~-~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 70 L-PPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred h-hhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 0 0012234444433211
Q ss_pred ----EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ----YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ----~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+. + ++++||++
T Consensus 149 ~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 192 (214)
T cd03297 149 QPELLLLDEPFS---ALDRALRLQLLPELKQIKKNLNIPVIFVTHDL 192 (214)
T ss_pred CCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH
Confidence 79999999 99999999999999999764 5 89999986
No 197
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.56 E-value=1.4e-14 Score=122.56 Aligned_cols=122 Identities=20% Similarity=0.124 Sum_probs=85.3
Q ss_pred eeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-ccccccc
Q 023887 138 EPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVST 214 (276)
Q Consensus 138 ~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~vs~ 214 (276)
+.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.+++. .++-+..
T Consensus 4 ~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~~~~~i~~~~q 71 (166)
T cd03223 4 ENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW------------PWGSGRIGMPEGEDLLFLPQ 71 (166)
T ss_pred EEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCCceEEEECC
Confidence 456666643 45788888887 89999999999999999999999965 899999998873 2333332
Q ss_pred ccCCCCcee-eeEEE---Eec----------------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeee
Q 023887 215 KSGRGKHTT-RHVSL---LPL----------------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHM 274 (276)
Q Consensus 215 ~~g~gk~tt-~~~~~---~~~----------------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~ 274 (276)
....-..+. .++.+ ..+ .+..+++|||.. ++|....+.+.+.+.++. ..+|++||+
T Consensus 72 ~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~---~LD~~~~~~l~~~l~~~~-~tiiivsh~ 147 (166)
T cd03223 72 RPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATS---ALDEESEDRLYQLLKELG-ITVISVGHR 147 (166)
T ss_pred CCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCcc---ccCHHHHHHHHHHHHHhC-CEEEEEeCC
Confidence 211100000 11110 001 123389999999 999999999999888872 239999998
Q ss_pred C
Q 023887 275 L 275 (276)
Q Consensus 275 ~ 275 (276)
+
T Consensus 148 ~ 148 (166)
T cd03223 148 P 148 (166)
T ss_pred h
Confidence 6
No 198
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.56 E-value=4.3e-15 Score=151.40 Aligned_cols=120 Identities=16% Similarity=0.194 Sum_probs=98.8
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. ...++++++.+ +|++++++|+||+|||||+++|+| +|+|++|+|.++|.++..
T Consensus 478 I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g------------l~~p~~G~I~idg~~i~~ 545 (710)
T TIGR03796 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG------------LYQPWSGEILFDGIPREE 545 (710)
T ss_pred EEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCcEEEECCEeHHH
Confidence 446778888864 46799999998 899999999999999999999999 569999999999999887
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++..
T Consensus 546 ~~~~~-----lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ 620 (710)
T TIGR03796 546 IPREV-----LANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ 620 (710)
T ss_pred CCHHH-----HHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence 66433 56677777776422
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.+. ..-+|++||.+
T Consensus 621 rQRiaLARall~~p~iliLDEptS---~LD~~te~~i~~~l~~~-~~T~IiitHrl 672 (710)
T TIGR03796 621 RQRLEIARALVRNPSILILDEATS---ALDPETEKIIDDNLRRR-GCTCIIVAHRL 672 (710)
T ss_pred HHHHHHHHHHhhCCCEEEEECccc---cCCHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 79999999 99999989888888762 12299999975
No 199
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.56 E-value=6.8e-15 Score=132.50 Aligned_cols=60 Identities=27% Similarity=0.314 Sum_probs=52.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.+
T Consensus 9 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~ 69 (258)
T PRK11701 9 VRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL------------APDAGEVHYRMRD 69 (258)
T ss_pred EeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCcc
Confidence 456677776666788888887 89999999999999999999999965 8999999999986
No 200
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.56 E-value=9.5e-15 Score=126.29 Aligned_cols=123 Identities=22% Similarity=0.303 Sum_probs=83.7
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc---
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS--- 213 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs--- 213 (276)
+.+.++|.....++ +++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+
T Consensus 5 ~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~i~~~~~~~ 71 (195)
T PRK13541 5 HQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIM------------QPSSGNIYYKNCNINNIAKPY 71 (195)
T ss_pred EEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCcccChhhhhh
Confidence 45566665544444 77776 89999999999999999999999965 899999999997653321
Q ss_pred -----cccCCCCcee--eeEE-----------------EEec---------------------------CCCcEEEecCC
Q 023887 214 -----TKSGRGKHTT--RHVS-----------------LLPL---------------------------SGGGYLADTPG 242 (276)
Q Consensus 214 -----~~~g~gk~tt--~~~~-----------------~~~~---------------------------~~~~~iiDtPg 242 (276)
...+.-.+.| ..+. .+.+ .+..+++|||.
T Consensus 72 ~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~ 151 (195)
T PRK13541 72 CTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE 151 (195)
T ss_pred EEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0000000000 0000 0000 00117999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 243 FNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 243 ~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
. ++|....+.+.+.+.+..+.+ ++++||+++
T Consensus 152 ~---~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 152 T---NLSKENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred c---cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 9 999999999999998766655 999999864
No 201
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.56 E-value=7.4e-15 Score=129.43 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=87.8
Q ss_pred CceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 136 GYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 136 ~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
.++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 13 ~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~ 80 (226)
T cd03248 13 KFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY------------QPQGGQVLLDGKPISQ 80 (226)
T ss_pred EEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCcEEEECCCchHH
Confidence 34667777754 24788888887 89999999999999999999999965 8999999999876532
Q ss_pred ccc------------cc-------------CCCCcee----e------------eE--EEEec-C---------------
Q 023887 212 VST------------KS-------------GRGKHTT----R------------HV--SLLPL-S--------------- 232 (276)
Q Consensus 212 vs~------------~~-------------g~gk~tt----~------------~~--~~~~~-~--------------- 232 (276)
... .. +...... . .. ++-.. .
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~ 160 (226)
T cd03248 81 YEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVA 160 (226)
T ss_pred cCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH
Confidence 110 00 0000000 0 00 00000 0
Q ss_pred --------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 --------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 --------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.. ++++||++
T Consensus 161 laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 209 (226)
T cd03248 161 IARALIRNPQVLILDEATS---ALDAESEQQVQQALYDWPERRTVLVIAHRL 209 (226)
T ss_pred HHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 01179999999 999999999999999987633 99999986
No 202
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.56 E-value=8.8e-15 Score=130.86 Aligned_cols=121 Identities=21% Similarity=0.303 Sum_probs=88.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc-----ccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~-----~G~i~~~g~~~~ 210 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|+ +|+|+++|.++.
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 4 IENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN------------DLVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred EEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC------------CCCcCCCCceEEEECCEEcc
Confidence 456777777667889999888 89999999999999999999999965 777 999999987654
Q ss_pred ccccccCCCCceeeeEEEEec-----------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPL----------------------------------------------------------- 231 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~----------------------------------------------------------- 231 (276)
..+... ......++++++
T Consensus 72 ~~~~~~---~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 148 (247)
T TIGR00972 72 DKKIDV---VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGG 148 (247)
T ss_pred ccccch---HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHH
Confidence 210000 000000000000
Q ss_pred -------------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -------------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -------------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+++|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tiiivsH~~ 203 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTS---ALDPIATGKIEELIQELKKKYTIVIVTHNM 203 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhcCeEEEEecCH
Confidence 001179999999 999999999999999987644 99999986
No 203
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.56 E-value=4.8e-15 Score=147.44 Aligned_cols=121 Identities=21% Similarity=0.294 Sum_probs=104.0
Q ss_pred cCceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|. ++..++++++.+ +|++++++|+||+|||||+|+|.+ +|+|++|+|.+||.++.++
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r------------~~~~~~G~I~idg~dI~~i 396 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR------------LYDPTSGEILIDGIDIRDI 396 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc------------cCCCCCCeEEECCEehhhc
Confidence 45678889998 578999999998 899999999999999999999999 6799999999999999988
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.+++++|+...
T Consensus 397 ~~~~-----lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 397 SLDS-----LRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred CHHH-----HHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 7554 66777888876422
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+...+.+.+.++.+.- +++++|.+
T Consensus 472 QrlaiARall~~~~ILILDEaTS---alD~~tE~~I~~~l~~l~~~rT~iiIaHRl 524 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATS---ALDTETEALIQDALKKLLKGRTTLIIAHRL 524 (567)
T ss_pred HHHHHHHHHhcCCCEEEEecccc---ccCHHhHHHHHHHHHHHhcCCEEEEEeccH
Confidence 69999999 999999999999998777432 78899976
No 204
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=4.1e-15 Score=138.92 Aligned_cols=128 Identities=20% Similarity=0.154 Sum_probs=94.9
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.... -..|++|+|.++|+++..
T Consensus 6 v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~--------~~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 6 VDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDY--------PGRVMAEKLEFNGQDLQR 77 (326)
T ss_pred EeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--------CCCCcceEEEECCEECCc
Confidence 4456666654 24789999988 8999999999999999999999996510 002589999999988765
Q ss_pred cccccCCCCceeeeEEEEecCCC--c------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGG--G------------------------------------------------------ 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~--~------------------------------------------------------ 235 (276)
.+.+. +.+...+.+++++|++. .
T Consensus 78 ~~~~~-~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSg 156 (326)
T PRK11022 78 ISEKE-RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSG 156 (326)
T ss_pred CCHHH-HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 43221 01111234566665431 0
Q ss_pred ------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. ++|.....++.+.+.++.+. + +|++|||++
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts---~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTT---ALDVTIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999863 5 999999973
No 205
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.56 E-value=9.9e-15 Score=130.26 Aligned_cols=126 Identities=21% Similarity=0.194 Sum_probs=88.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc-
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST- 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~- 214 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|.++|.++...+.
T Consensus 4 ~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----------~~~~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 4 IKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRE----------DYEVTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred EEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCc----------cCCCCceEEEECCCccccCCHH
Confidence 456667776666788998887 89999999999999999999999963 136899999999865432110
Q ss_pred ------------ccCC-------------CCceee--e---EE----------------E--------E--ecC------
Q 023887 215 ------------KSGR-------------GKHTTR--H---VS----------------L--------L--PLS------ 232 (276)
Q Consensus 215 ------------~~g~-------------gk~tt~--~---~~----------------~--------~--~~~------ 232 (276)
.... .+.... . .. + . .++
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHH
Confidence 0000 000000 0 00 0 0 011
Q ss_pred ----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 ----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 154 v~laral~~~p~illLDEPt~---~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~ 205 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDS---GLDIDALKIVADGVNSLRDGKRSFIIVTHYQ 205 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 11289999999 999999999999999998765 89999985
No 206
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=1.2e-14 Score=128.72 Aligned_cols=115 Identities=26% Similarity=0.291 Sum_probs=84.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.... .++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++......
T Consensus 4 ~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~~~~~~ 69 (232)
T PRK10771 4 LTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL------------TPASGSLTLNGQDHTTTPPS 69 (232)
T ss_pred EEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCeecCcCChh
Confidence 355666775422 3667766 89999999999999999999999965 89999999998765432110
Q ss_pred cCCCCceeeeEEEEecCC--------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSG-------------------------------------------------------------- 233 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~-------------------------------------------------------------- 233 (276)
.+.++++++..
T Consensus 70 -------~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 142 (232)
T PRK10771 70 -------RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALAR 142 (232)
T ss_pred -------hccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHH
Confidence 00111111110
Q ss_pred ------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 ------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 ------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 143 al~~~p~lllLDEP~~---gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~ 190 (232)
T PRK10771 143 CLVREQPILLLDEPFS---ALDPALRQEMLTLVSQVCQERQLTLLMVSHSL 190 (232)
T ss_pred HHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 0079999999 99999999999999998763 5 99999986
No 207
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.56 E-value=1.4e-14 Score=129.67 Aligned_cols=126 Identities=19% Similarity=0.303 Sum_probs=89.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|+++|.++...+..
T Consensus 10 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~----------~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T CHL00131 10 IKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHP----------AYKILEGDILFKGESILDLEPE 79 (252)
T ss_pred EEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCC----------cCcCCCceEEECCEEcccCChh
Confidence 456667776666889999887 89999999999999999999999963 2478999999988665332110
Q ss_pred c----CC---------CCcee----------------------------------eeEEE--------E-e-cCC-----
Q 023887 216 S----GR---------GKHTT----------------------------------RHVSL--------L-P-LSG----- 233 (276)
Q Consensus 216 ~----g~---------gk~tt----------------------------------~~~~~--------~-~-~~~----- 233 (276)
. +. -+.++ ....+ + . ++.
T Consensus 80 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 80 ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHH
Confidence 0 00 00000 00000 0 0 110
Q ss_pred -----------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 -----------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 -----------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||.. ++|..+.+.+.+.+.++.+.+ +|++||++
T Consensus 160 v~la~al~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~ 211 (252)
T CHL00131 160 NEILQMALLDSELAILDETDS---GLDIDALKIIAEGINKLMTSENSIILITHYQ 211 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 1189999999 999999999999999998655 89999985
No 208
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.56 E-value=5.4e-15 Score=145.40 Aligned_cols=124 Identities=19% Similarity=0.240 Sum_probs=90.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc-
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST- 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~- 214 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+.
T Consensus 8 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~i~~~~~~ 75 (510)
T PRK09700 8 MAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH------------EPTKGTITINNINYNKLDHK 75 (510)
T ss_pred EeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc------------CCCccEEEECCEECCCCCHH
Confidence 456777787667899999988 89999999999999999999999965 8999999999876533211
Q ss_pred ------------ccCCCCcee--eeEEE--E------e---------------------c--------------------
Q 023887 215 ------------KSGRGKHTT--RHVSL--L------P---------------------L-------------------- 231 (276)
Q Consensus 215 ------------~~g~gk~tt--~~~~~--~------~---------------------~-------------------- 231 (276)
....-...| ..+.+ . . +
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred HHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH
Confidence 000000000 00000 0 0 0
Q ss_pred -------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 -------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 -------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
++..+|+|||.. ++|......+.+.+.++.+.| +|++||++
T Consensus 156 ia~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~ 205 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTS---SLTNKEVDYLFLIMNQLRKEGTAIVYISHKL 205 (510)
T ss_pred HHHHHhcCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 000179999999 999999999999999998766 99999986
No 209
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=5.8e-15 Score=145.12 Aligned_cols=120 Identities=18% Similarity=0.287 Sum_probs=89.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc--cccceeeccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+|+|+|.. +| ++|+|+++|.++...+
T Consensus 8 ~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 8 MKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY------------PHGTYEGEIIFEGEELQASN 75 (506)
T ss_pred EeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCeEEEECCEECCCCC
Confidence 456777887667899999998 89999999999999999999999965 54 8999999987653211
Q ss_pred cccCCCCceeeeEEEEecC-------------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLS------------------------------------------------------------- 232 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~------------------------------------------------------------- 232 (276)
...- ....+++++|.
T Consensus 76 ~~~~----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqr 151 (506)
T PRK13549 76 IRDT----ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQL 151 (506)
T ss_pred HHHH----HHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH
Confidence 0000 00001111000
Q ss_pred ----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 ----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+|+|||.. ++|......+.+.+.++.+.+ +|++||++
T Consensus 152 v~la~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~ 203 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTA---SLTESETAVLLDIIRDLKAHGIACIYISHKL 203 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 00179999999 999999999999999997765 99999986
No 210
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.56 E-value=5.7e-15 Score=145.00 Aligned_cols=120 Identities=23% Similarity=0.299 Sum_probs=89.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+..
T Consensus 7 ~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 7 FDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY------------QPDAGSILIDGQEMRFASTT 74 (501)
T ss_pred EeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCCEEEECCEECCCCCHH
Confidence 456677777667889999888 89999999999999999999999965 89999999998765321100
Q ss_pred cCCCCceeeeEEEEecC---------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLS--------------------------------------------------------------- 232 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~--------------------------------------------------------------- 232 (276)
.. ....+++++|.
T Consensus 75 ~~----~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ 150 (501)
T PRK11288 75 AA----LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVE 150 (501)
T ss_pred HH----HhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHH
Confidence 00 00011111110
Q ss_pred --------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 --------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 --------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+|+|||+. ++|....+.+.+.+.++.+.| +|++||++
T Consensus 151 laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~ 200 (501)
T PRK11288 151 IAKALARNARVIAFDEPTS---SLSAREIEQLFRVIRELRAEGRVILYVSHRM 200 (501)
T ss_pred HHHHHHhCCCEEEEcCCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 00179999999 999999999999999998766 99999986
No 211
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.56 E-value=5.2e-15 Score=146.89 Aligned_cols=121 Identities=21% Similarity=0.298 Sum_probs=95.6
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. ...++++++.+ +|++++++|+||+|||||+++|+| +|+|++|+|.++|.++..
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~g------------l~~~~~G~I~i~g~~i~~ 398 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPR------------FYEPDSGQILLDGHDLAD 398 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCCeEEECCEeHHh
Confidence 445677888854 45789999988 899999999999999999999999 459999999999988776
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .+..+++++|++..
T Consensus 399 ~~~~~-----~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 399 YTLAS-----LRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred cCHHH-----HHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 54322 33344444443211
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.+..+.. +|++||+.
T Consensus 474 qrQRiaLARall~~~~illLDEpts---~LD~~~~~~i~~~L~~~~~~~tiIiitH~~ 528 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATS---ALDNESERLVQAALERLMQGRTTLVIAHRL 528 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccc---cCCHHHHHHHHHHHHHHhCCCEEEEEehhh
Confidence 79999999 999999999999999886544 99999985
No 212
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=9.4e-15 Score=131.01 Aligned_cols=124 Identities=19% Similarity=0.261 Sum_probs=86.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc--ccccceeeccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~--p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|... .++ |++|+|+++|+++...+
T Consensus 9 ~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 9 ARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMND---------LIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred EeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcc---------cCCCCCCceEEEECCEEccccc
Confidence 455667776666889999888 899999999999999999999999641 012 68999999887653210
Q ss_pred cccCCCCceeeeEEEEecC-------------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLS------------------------------------------------------------- 232 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~------------------------------------------------------------- 232 (276)
.... .....++++++.
T Consensus 80 ~~~~---~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 80 VDVV---ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQ 156 (253)
T ss_pred cCHH---HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 0000 000001111000
Q ss_pred -----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 -----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 -----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.. ++++||++
T Consensus 157 rv~laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tvii~tH~~ 208 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPAS---ALDPIATQKIEELIHELKARYTIIIVTHNM 208 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHhcCCeEEEEEecH
Confidence 01179999999 999999999999999996532 99999986
No 213
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.56 E-value=6e-15 Score=144.32 Aligned_cols=123 Identities=18% Similarity=0.189 Sum_probs=89.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+|+|+|.. +|++|+|.++|.++...+..
T Consensus 6 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~------------~p~~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 6 ISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL------------PLLSGERQSQFSHITRLSFE 73 (490)
T ss_pred EEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCceEEECCcccccCCHH
Confidence 456778887667899999988 89999999999999999999999966 89999999887654321100
Q ss_pred -----cCCCC---------------ceeeeEEEEe-----------------c---------------------------
Q 023887 216 -----SGRGK---------------HTTRHVSLLP-----------------L--------------------------- 231 (276)
Q Consensus 216 -----~g~gk---------------~tt~~~~~~~-----------------~--------------------------- 231 (276)
.+.-. ..+. ...+. +
T Consensus 74 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (490)
T PRK10938 74 QLQKLVSDEWQRNNTDMLSPGEDDTGRTT-AEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS 152 (490)
T ss_pred HHHHHhceeccCcchhhcccchhhccccH-HHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 00000 0000 00000 0
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
++..+++|||+. ++|....+.+.+.+.++.+.| +|++||++
T Consensus 153 ~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~ 195 (490)
T PRK10938 153 EPDLLILDEPFD---GLDVASRQQLAELLASLHQSGITLVLVLNRF 195 (490)
T ss_pred CCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 000179999999 999999999999999998766 89999986
No 214
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1e-14 Score=130.78 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=52.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-----cccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~~~ 210 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|+++|.++.
T Consensus 7 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 7 TVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL------------ELNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred EEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CcccCCCCceEEEECCEEcc
Confidence 456777777667899999988 89999999999999999999999965 54 5899999887653
No 215
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.56 E-value=9.9e-15 Score=129.95 Aligned_cols=111 Identities=16% Similarity=0.231 Sum_probs=83.3
Q ss_pred cCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCce
Q 023887 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (276)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~t 222 (276)
|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.+...... . .
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~~~~~~~--~----~ 92 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL------------QPTSGEVRVAGLVPWKRRK--K----F 92 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCEEccccch--h----h
Confidence 34455688888887 89999999999999999999999965 8999999998875422110 0 1
Q ss_pred eeeEEEEe-cCC--------------------------------------------------------------------
Q 023887 223 TRHVSLLP-LSG-------------------------------------------------------------------- 233 (276)
Q Consensus 223 t~~~~~~~-~~~-------------------------------------------------------------------- 233 (276)
...+++++ +..
T Consensus 93 ~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p 172 (236)
T cd03267 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEP 172 (236)
T ss_pred cccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 11222221 100
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 173 ~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 214 (236)
T cd03267 173 EILFLDEPTI---GLDVVAQENIRNFLKEYNRERGTTVLLTSHYM 214 (236)
T ss_pred CEEEEcCCCC---CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 0079999999 99999999999999999764 4 99999986
No 216
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=7e-15 Score=131.87 Aligned_cols=62 Identities=19% Similarity=0.393 Sum_probs=53.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~~~g~~~~ 70 (255)
T PRK11300 8 VSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY------------KPTGGTILLRGQHIE 70 (255)
T ss_pred EeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc------------CCCcceEEECCEECC
Confidence 456667776667889999887 89999999999999999999999965 899999999997653
No 217
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=5.6e-15 Score=138.07 Aligned_cols=112 Identities=22% Similarity=0.296 Sum_probs=89.6
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+...- +...+.+
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~------------~p~~G~i~~~g~~l~~~~~~~~--~~~r~~i 94 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE------------TPTGGELYYQGQDLLKADPEAQ--KLLRQKI 94 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC------------CCCCcEEEECCEEcCcCCHHHH--HHHhCCE
Confidence 4688888887 89999999999999999999999965 8999999999988765432110 1123456
Q ss_pred EEEecCCC--c---------------------------------------------------------------------
Q 023887 227 SLLPLSGG--G--------------------------------------------------------------------- 235 (276)
Q Consensus 227 ~~~~~~~~--~--------------------------------------------------------------------- 235 (276)
++++|++. .
T Consensus 95 ~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~ 174 (327)
T PRK11308 95 QIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPD 174 (327)
T ss_pred EEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCC
Confidence 66666531 0
Q ss_pred -EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. +||.....++.+++.++.+. + +|++|||++
T Consensus 175 lLilDEPts---~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 216 (327)
T PRK11308 175 VVVADEPVS---ALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS 216 (327)
T ss_pred EEEEECCCc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 79999999 99999999999999999874 5 999999963
No 218
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1.2e-14 Score=125.58 Aligned_cols=115 Identities=23% Similarity=0.332 Sum_probs=91.8
Q ss_pred ceeEEEecCCcc--chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~--~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
.+.+..+|.... .+++++..+ +|+.++++||||||||||+|.++|.. +|+.|+|.+++.++....
T Consensus 6 ~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~------------~P~~G~i~l~~r~i~gPg 73 (259)
T COG4525 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV------------TPSRGSIQLNGRRIEGPG 73 (259)
T ss_pred hhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc------------CcccceEEECCEeccCCC
Confidence 356677787666 688888887 89999999999999999999999965 999999999998775432
Q ss_pred cccCCCCceeeeEEEEecCCC-----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGG----------------------------------------------------------- 234 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~----------------------------------------------------------- 234 (276)
.. .+.++|...
T Consensus 74 ae----------rgvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGi 143 (259)
T COG4525 74 AE----------RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGI 143 (259)
T ss_pred cc----------ceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHH
Confidence 11 122222221
Q ss_pred ---------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 ---------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 ---------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+++|+|.- .+|..+.+.+..++-++... | ++++||+++
T Consensus 144 ARALa~eP~~LlLDEPfg---AlDa~tRe~mQelLldlw~~tgk~~lliTH~ie 194 (259)
T COG4525 144 ARALAVEPQLLLLDEPFG---ALDALTREQMQELLLDLWQETGKQVLLITHDIE 194 (259)
T ss_pred HHHhhcCcceEeecCchh---hHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 179999998 89999999999999999975 4 999999864
No 219
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.55 E-value=4.4e-15 Score=139.01 Aligned_cols=112 Identities=18% Similarity=0.227 Sum_probs=87.1
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+...- +..++.+
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~------------~p~~G~I~~~G~~i~~~~~~~~--~~~r~~i 100 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV------------KATDGEVAWLGKDLLGMKDDEW--RAVRSDI 100 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC------------CCCCcEEEECCEECCcCCHHHH--HHHhCce
Confidence 3578888887 89999999999999999999999966 8999999999987754432110 0012344
Q ss_pred EEEecCCC--c---------------------------------------------------------------------
Q 023887 227 SLLPLSGG--G--------------------------------------------------------------------- 235 (276)
Q Consensus 227 ~~~~~~~~--~--------------------------------------------------------------------- 235 (276)
++++|++. .
T Consensus 101 ~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P 180 (331)
T PRK15079 101 QMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEP 180 (331)
T ss_pred EEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 55444320 0
Q ss_pred --EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 --YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 --~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. +||.....++.+.+.++.+. + +|++|||++
T Consensus 181 ~llilDEPts---~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~ 223 (331)
T PRK15079 181 KLIICDEPVS---ALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA 223 (331)
T ss_pred CEEEEeCCCc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 79999999 99999999999999999874 5 999999973
No 220
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.55 E-value=1e-14 Score=130.80 Aligned_cols=60 Identities=27% Similarity=0.260 Sum_probs=52.1
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (276)
++.+.+.|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.+
T Consensus 6 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~ 66 (253)
T TIGR02323 6 VSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL------------APDHGTATYIMRS 66 (253)
T ss_pred EeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEEeccc
Confidence 455677776666789999888 89999999999999999999999965 8999999998865
No 221
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=1.4e-14 Score=126.20 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=87.1
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc---ccccceeecccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQR 208 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~---p~~G~i~~~g~~ 208 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|+++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT------------EGNVSVEGDIHYNGIP 73 (202)
T ss_pred EEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC------------CCCCCcceEEEECCEE
Confidence 4556666753 35678888887 89999999999999999999999965 5 899999999987
Q ss_pred ccccccccCCCCceeeeEEEEecCCCc---------------------------------------------EEEecCCC
Q 023887 209 VGEVSTKSGRGKHTTRHVSLLPLSGGG---------------------------------------------YLADTPGF 243 (276)
Q Consensus 209 ~~~vs~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------~iiDtPg~ 243 (276)
+...... ..+.++++++.... +++|||..
T Consensus 74 ~~~~~~~------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~ 147 (202)
T cd03233 74 YKEFAEK------YPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTR 147 (202)
T ss_pred Cccchhh------hcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCc
Confidence 6543210 22334444443211 79999999
Q ss_pred CCCCCChhhHHHHHHHHHHHhhc-c--eEEEee
Q 023887 244 NQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIH 273 (276)
Q Consensus 244 ~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H 273 (276)
++|....+.+.+.+.++.+. + +++++|
T Consensus 148 ---~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~ 177 (202)
T cd03233 148 ---GLDSSTALEILKCIRTMADVLKTTTFVSLY 177 (202)
T ss_pred ---cCCHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 99999999999999999864 3 455554
No 222
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=9.5e-15 Score=130.66 Aligned_cols=122 Identities=17% Similarity=0.211 Sum_probs=87.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.+.|++...++++++.+ +|++++|+|+||+|||||+|+|+|... -+.|++|+|.++|.++......
T Consensus 5 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 5 TTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMND---------KIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred eeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---------CCCCCceEEEECCEecccCCHH
Confidence 345667776667889999887 899999999999999999999999641 1247899999998765431100
Q ss_pred cCCCCceeeeEEEEecC---------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLS--------------------------------------------------------------- 232 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~--------------------------------------------------------------- 232 (276)
. ..+.++++++.
T Consensus 76 ~-----~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 150 (246)
T PRK14269 76 A-----LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQR 150 (246)
T ss_pred H-----HhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHH
Confidence 0 00011111110
Q ss_pred ----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.. ++++||++
T Consensus 151 v~laral~~~p~lllLDEP~~---~LD~~~~~~l~~~l~~~~~~~tiii~tH~~ 201 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTS---ALDPISSGVIEELLKELSHNLSMIMVTHNM 201 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 01179999999 999999999999999986522 99999986
No 223
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.55 E-value=9.9e-15 Score=131.43 Aligned_cols=124 Identities=21% Similarity=0.222 Sum_probs=87.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-ccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~vs~ 214 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.+++. .++-+..
T Consensus 7 ~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~------------~p~~G~i~~~~~~~i~~v~q 74 (251)
T PRK09544 7 LENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV------------APDEGVIKRNGKLRIGYVPQ 74 (251)
T ss_pred EeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCccCEEEecc
Confidence 455677777667888888887 89999999999999999999999965 899999988763 2222222
Q ss_pred ccCCCCce--e--eeEEE---------------Eec---------------------------CCCcEEEecCCCCCCCC
Q 023887 215 KSGRGKHT--T--RHVSL---------------LPL---------------------------SGGGYLADTPGFNQPSL 248 (276)
Q Consensus 215 ~~g~gk~t--t--~~~~~---------------~~~---------------------------~~~~~iiDtPg~~~~~l 248 (276)
........ + ....+ +-+ .+..+++|||.. ++
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~---~L 151 (251)
T PRK09544 75 KLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ---GV 151 (251)
T ss_pred ccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc---CC
Confidence 11111000 0 00000 000 001179999999 99
Q ss_pred ChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 249 LKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 249 ~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
|......+.+.+.++.+. + +|++||++
T Consensus 152 D~~~~~~l~~~L~~~~~~~g~tiiivsH~~ 181 (251)
T PRK09544 152 DVNGQVALYDLIDQLRRELDCAVLMVSHDL 181 (251)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 999999999999999764 5 89999986
No 224
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=9.1e-15 Score=132.76 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=88.1
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcc-cccccceeeccccccc--
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF-EPILGSKWFEDQRVGE-- 211 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~-~p~~G~i~~~g~~~~~-- 211 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... .+ .|++|+|.++|.++..
T Consensus 15 ~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--------~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 15 SLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDL--------IEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred EEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc--------cCCCCCceEEEECCEEccccc
Confidence 3566777887767899999988 8999999999999999999999996510 00 1689999998875421
Q ss_pred ------------cccccCCCCce------------------e-------eeEEE-------Ee-----c-----------
Q 023887 212 ------------VSTKSGRGKHT------------------T-------RHVSL-------LP-----L----------- 231 (276)
Q Consensus 212 ------------vs~~~g~gk~t------------------t-------~~~~~-------~~-----~----------- 231 (276)
+......-..+ . ....+ .. +
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la 166 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA 166 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence 11000000000 0 00000 00 0
Q ss_pred -----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
++..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 167 ral~~~p~lllLDEPt~---gLD~~~~~~l~~~l~~~~~~~tiiivtH~~ 213 (269)
T PRK14259 167 RTIAIEPEVILMDEPCS---ALDPISTLKIEETMHELKKNFTIVIVTHNM 213 (269)
T ss_pred HHHhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 001179999999 999999999999999986533 99999986
No 225
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=7.9e-15 Score=134.11 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=90.7
Q ss_pred ceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccc---cceeecccccc
Q 023887 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL---GSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~---G~i~~~g~~~~ 210 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++ |+|+++|.++.
T Consensus 8 i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~------------~p~~g~~G~i~i~g~~~~ 75 (282)
T PRK13640 8 FKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL------------LPDDNPNSKITVDGITLT 75 (282)
T ss_pred EEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc------------CCCCCCCcEEEECCEECC
Confidence 4556677753 34788888887 89999999999999999999999965 7887 89999998764
Q ss_pred ccccccCCCCceeeeEEEEecCCC--------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGG-------------------------------------------------------- 234 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~-------------------------------------------------------- 234 (276)
...... ....++++++++.
T Consensus 76 ~~~~~~-----~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~q 150 (282)
T PRK13640 76 AKTVWD-----IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQ 150 (282)
T ss_pred cCCHHH-----HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHH
Confidence 321100 1123334333210
Q ss_pred -------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 -------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 -------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+++|+|.. ++|....+.+.+.+.++.+. | ++++||+++
T Consensus 151 rv~laral~~~P~llllDEPt~---gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 151 RVAIAGILAVEPKIIILDESTS---MLDPAGKEQILKLIRKLKKKNNLTVISITHDID 205 (282)
T ss_pred HHHHHHHHHcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 079999999 99999999999999999764 5 999999863
No 226
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.5e-14 Score=131.11 Aligned_cols=127 Identities=15% Similarity=0.225 Sum_probs=88.7
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... .-+.|++|+|.++|+++...+.
T Consensus 23 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-------~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 23 EVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL-------IPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred EEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccc-------cCCCCCceEEEECCEEcccccc
Confidence 3567777887777899999888 8999999999999999999999996410 0012789999988866532100
Q ss_pred ccCCCCceeeeEEEEec---------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPL--------------------------------------------------------------- 231 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~--------------------------------------------------------------- 231 (276)
... ...+.++++++
T Consensus 96 ~~~---~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 96 NVV---NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR 172 (268)
T ss_pred cHH---HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence 000 00000111000
Q ss_pred ---------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ---------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ---------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 173 l~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~tiii~tH~~ 223 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPAS---ALDPISNAKIEELITELKEEYSIIIVTHNM 223 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCc---ccCHHHHHHHHHHHHHHhcCCEEEEEEeCH
Confidence 001179999999 999999999999999996533 99999986
No 227
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.54 E-value=1.1e-14 Score=145.19 Aligned_cols=122 Identities=19% Similarity=0.271 Sum_probs=97.1
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.+ ...++++++.+ +|++++++|+||+|||||+++|+| +|+|++|+|.++|.++.+
T Consensus 339 i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g------------~~~p~~G~I~i~g~~i~~ 406 (574)
T PRK11160 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTR------------AWDPQQGEILLNGQPIAD 406 (574)
T ss_pred EEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEEhhh
Confidence 456778888864 35799999988 899999999999999999999999 459999999999988776
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++..
T Consensus 407 ~~~~~-----~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqr 481 (574)
T PRK11160 407 YSEAA-----LRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQ 481 (574)
T ss_pred CCHHH-----HHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHH
Confidence 54322 33444555444211
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||+++
T Consensus 482 qRialARall~~~~ililDE~ts---~lD~~t~~~i~~~l~~~~~~~tviiitHr~~ 535 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTE---GLDAETERQILELLAEHAQNKTVLMITHRLT 535 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHcCCCEEEEEecChh
Confidence 79999999 999999999999999886533 899999863
No 228
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=9.1e-15 Score=140.04 Aligned_cols=111 Identities=19% Similarity=0.268 Sum_probs=85.0
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
+++++++.+ +|++++|+|+||+|||||+++|.|.. +|++|+|+++|.++...+...- .+...+.++
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~------------~p~sG~I~i~G~~i~~~~~~~l-~~~~~~~ig 109 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI------------EPTRGQVLIDGVDIAKISDAEL-REVRRKKIA 109 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC------------CCCCCEEEECCEECCcCCHHHH-HHHHhCCEE
Confidence 577777777 89999999999999999999999965 8999999999987654332100 000112344
Q ss_pred EEecCCCc--------------------------------------------------------------------EEEe
Q 023887 228 LLPLSGGG--------------------------------------------------------------------YLAD 239 (276)
Q Consensus 228 ~~~~~~~~--------------------------------------------------------------------~iiD 239 (276)
+++|.... +|+|
T Consensus 110 yv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 110 MVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred EEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 44443211 7999
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
||.. ++|....+.+.+.+.++.+ .+ +|++||++
T Consensus 190 EPts---~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~ 225 (400)
T PRK10070 190 EAFS---ALDPLIRTEMQDELVKLQAKHQRTIVFISHDL 225 (400)
T ss_pred CCCc---cCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH
Confidence 9999 9999999999999999975 35 89999986
No 229
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.54 E-value=1.4e-14 Score=144.87 Aligned_cols=121 Identities=20% Similarity=0.306 Sum_probs=94.1
Q ss_pred cCceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|.+ ...++++++.+ +|++++++|+||+|||||+++|+| +|+|++|+|.++|.++...
T Consensus 335 i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g------------~~~~~~G~i~~~g~~~~~~ 402 (585)
T TIGR01192 335 VEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQR------------VYDPTVGQILIDGIDINTV 402 (585)
T ss_pred EEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHcc------------CCCCCCCEEEECCEEhhhC
Confidence 446778888865 45789999888 899999999999999999999999 4599999999999877654
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.+++++|++..
T Consensus 403 ~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 403 TRES-----LRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred CHHH-----HHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 3211 22233333333210
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 478 qrl~lARall~~p~ililDEpts---~LD~~~~~~i~~~l~~~~~~~tvI~isH~~ 530 (585)
T TIGR01192 478 QRLAIARAILKNAPILVLDEATS---ALDVETEARVKNAIDALRKNRTTFIIAHRL 530 (585)
T ss_pred HHHHHHHHHhcCCCEEEEECCcc---CCCHHHHHHHHHHHHHHhCCCEEEEEEcCh
Confidence 79999999 999999999999998886533 99999986
No 230
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.54 E-value=2e-14 Score=135.61 Aligned_cols=118 Identities=21% Similarity=0.191 Sum_probs=87.5
Q ss_pred EEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCC
Q 023887 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~ 218 (276)
+.++|++.. + ++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++........
T Consensus 5 l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~------------~p~~G~I~~~g~~i~~~~~~~~- 69 (354)
T TIGR02142 5 FSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT------------RPDEGEIVLNGRTLFDSRKGIF- 69 (354)
T ss_pred EEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECccCccccc-
Confidence 455665433 3 667766 89999999999999999999999965 8999999999987643211000
Q ss_pred CCceeeeEEEEecCCCc---------------------------------------------------------------
Q 023887 219 GKHTTRHVSLLPLSGGG--------------------------------------------------------------- 235 (276)
Q Consensus 219 gk~tt~~~~~~~~~~~~--------------------------------------------------------------- 235 (276)
.....+.++++++....
T Consensus 70 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 70 LPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred cchhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 00112345555543211
Q ss_pred ---EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 150 p~lllLDEPts---~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~ 192 (354)
T TIGR02142 150 PRLLLMDEPLA---ALDDPRKYEILPYLERLHAEFGIPILYVSHSL 192 (354)
T ss_pred CCEEEEcCCCc---CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 79999999 99999999999999999875 5 99999986
No 231
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.54 E-value=2.8e-14 Score=125.98 Aligned_cols=114 Identities=25% Similarity=0.289 Sum_probs=80.4
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc---ccccceeeccccccc---------cc
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQRVGE---------VS 213 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~---p~~G~i~~~g~~~~~---------vs 213 (276)
...++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|+++|.++.. +.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~------------~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~ 87 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV------------EGGGTTSGQILFNGQPRKPDQFQKCVAYVR 87 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc------------CCCCCCceEEEECCEECChHHhcccEEEeC
Confidence 45788888887 89999999999999999999999965 5 899999998865421 11
Q ss_pred cccCCCCc------------------eee-----eE-E-EEe---c-----------C----------------CCcEEE
Q 023887 214 TKSGRGKH------------------TTR-----HV-S-LLP---L-----------S----------------GGGYLA 238 (276)
Q Consensus 214 ~~~g~gk~------------------tt~-----~~-~-~~~---~-----------~----------------~~~~ii 238 (276)
.....-.+ ... .. . .+. + + +..+++
T Consensus 88 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illl 167 (226)
T cd03234 88 QDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLIL 167 (226)
T ss_pred CCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEE
Confidence 00000000 000 00 0 000 0 0 011799
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
|||.. ++|......+.+.+.++.+.+ ++++||++
T Consensus 168 DEP~~---gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 168 DEPTS---GLDSFTALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred eCCCc---CCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 99999 999999999999999998765 89999985
No 232
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.53 E-value=1.8e-14 Score=126.80 Aligned_cols=123 Identities=21% Similarity=0.218 Sum_probs=85.5
Q ss_pred ceeEEEecCC-------ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec--c
Q 023887 137 YEPLFCSVES-------KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE--D 206 (276)
Q Consensus 137 ~~~~~~s~~~-------~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~--g 206 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++ |
T Consensus 4 ~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~~~g 71 (224)
T TIGR02324 4 VEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY------------LPDSGRILVRHEG 71 (224)
T ss_pred EEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEEecCC
Confidence 3456666642 35789999887 89999999999999999999999965 8999999987 3
Q ss_pred c--cccccccccCCCCceeeeEEEEecCC---------------------------------------------------
Q 023887 207 Q--RVGEVSTKSGRGKHTTRHVSLLPLSG--------------------------------------------------- 233 (276)
Q Consensus 207 ~--~~~~vs~~~g~gk~tt~~~~~~~~~~--------------------------------------------------- 233 (276)
. ++...+... ......+.++++++..
T Consensus 72 ~~~~~~~~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 150 (224)
T TIGR02324 72 AWVDLAQASPRE-VLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATF 150 (224)
T ss_pred CccchhhcCHHH-HHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccC
Confidence 2 221111000 0000001112221111
Q ss_pred ------------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 ------------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++++.+ ++++||++
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~ 209 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTA---SLDAANRQVVVELIAEAKARGAALIGIFHDE 209 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 1179999999 999999999999999998766 89999985
No 233
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.53 E-value=1.5e-14 Score=130.53 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=51.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc---ccceeeccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRV 209 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~~ 209 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|+ +|+|+++|.++
T Consensus 7 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 7 VEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI------------TGDKSAGSHIELLGRTV 71 (262)
T ss_pred EeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC------------CCCCCCceEEEECCEec
Confidence 456677777777899999988 89999999999999999999999965 554 59999998765
No 234
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.53 E-value=8.5e-15 Score=149.52 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=93.6
Q ss_pred cCceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.++.+.++|.+ ...++++++.+ +|++++|+|+||+|||||+|+|.| +|+|++|+|.++|.++.
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~g------------l~~p~~G~I~idg~~i~ 546 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQN------------LYQPTGGQVLLDGVPLV 546 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCCEEEECCEEHH
Confidence 456778888864 35799999998 899999999999999999999999 56999999999999987
Q ss_pred ccccccCCCCceeeeEEEEecCCCc-------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------- 235 (276)
++.... .++.+++++|++..
T Consensus 547 ~~~~~~-----lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 621 (711)
T TIGR00958 547 QYDHHY-----LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGG 621 (711)
T ss_pred hcCHHH-----HHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHH
Confidence 765332 44566666665321
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
+|+|||+. ++|..+.+.+.+ .......-+|++||.+
T Consensus 622 QkQRlalARALl~~p~ILILDEpTS---aLD~~te~~i~~-~~~~~~~TvIiItHrl 674 (711)
T TIGR00958 622 QKQRIAIARALVRKPRVLILDEATS---ALDAECEQLLQE-SRSRASRTVLLIAHRL 674 (711)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcccc---ccCHHHHHHHHH-hhccCCCeEEEEeccH
Confidence 79999999 999988777776 2222111299999986
No 235
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.53 E-value=2.7e-14 Score=128.41 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=86.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc----cccceeeccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP----ILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p----~~G~i~~~g~~~~~ 211 (276)
++.+.++| +...++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|+++|.++..
T Consensus 7 ~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~~~~~~~~G~i~~~g~~i~~ 73 (254)
T PRK10418 7 LRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL------------PAGVRQTAGRVLLDGKPVAP 73 (254)
T ss_pred EeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCcCCEEEECCeeccc
Confidence 45566677 456788999887 89999999999999999999999976 66 89999999876521
Q ss_pred ----------cccccC--CCCcee---------------e----------eEEEEe-----------cC-----------
Q 023887 212 ----------VSTKSG--RGKHTT---------------R----------HVSLLP-----------LS----------- 232 (276)
Q Consensus 212 ----------vs~~~g--~gk~tt---------------~----------~~~~~~-----------~~----------- 232 (276)
+...+. .....+ . ...+-. ++
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 74 CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 111100 000000 0 000000 00
Q ss_pred -----CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 233 -----GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 233 -----~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+. + ++++||++
T Consensus 154 al~~~p~lLlLDEPt~---~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~ 201 (254)
T PRK10418 154 ALLCEAPFIIADEPTT---DLDVVAQARILDLLESIVQKRALGMLLVTHDM 201 (254)
T ss_pred HHhcCCCEEEEeCCCc---ccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 01179999999 99999999999999998764 4 99999985
No 236
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.1e-14 Score=136.25 Aligned_cols=127 Identities=19% Similarity=0.212 Sum_probs=88.3
Q ss_pred ceeEEEecC----CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.... -+.|++|+|+++|+++..
T Consensus 6 v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~--------~~~~~~G~i~~~g~~i~~ 77 (330)
T PRK15093 6 IRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKD--------NWRVTADRMRFDDIDLLR 77 (330)
T ss_pred EeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCC--------CCCCcceEEEECCEECCc
Confidence 345666663 234789999888 8999999999999999999999997620 124689999999876543
Q ss_pred cccccCCCCceeeeEEEEecC-----------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLS----------------------------------------------------------- 232 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~----------------------------------------------------------- 232 (276)
.+...- .+...+.+++++|+
T Consensus 78 ~~~~~~-~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p 156 (330)
T PRK15093 78 LSPRER-RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP 156 (330)
T ss_pred CCHHHH-HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc
Confidence 211000 00000011111110
Q ss_pred --------------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 233 --------------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 233 --------------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+..+|+|||.. +||.....++.+.+.++.+. + +|++|||+
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts---~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl 219 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTN---AMEPTTQAQIFRLLTRLNQNNNTTILLISHDL 219 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 00179999999 99999999999999999874 5 99999996
No 237
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.53 E-value=1.8e-14 Score=142.69 Aligned_cols=121 Identities=24% Similarity=0.326 Sum_probs=94.5
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.+ ...++++++.+ +|++++++|+||+|||||+++|+|. |+|++|+|.++|.++..
T Consensus 317 i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~------------~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 317 LSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI------------WPPTSGSVRLDGADLKQ 384 (544)
T ss_pred EEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEehhh
Confidence 445677888854 46799999988 8999999999999999999999994 59999999999987765
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+... .++.+++++|++..
T Consensus 385 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq 459 (544)
T TIGR01842 385 WDRET-----FGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQ 459 (544)
T ss_pred CCHHH-----HhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHH
Confidence 43221 22334444333210
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++...+ +|++||++
T Consensus 460 ~qrl~lARall~~~~ililDEpts---~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~ 514 (544)
T TIGR01842 460 RQRIALARALYGDPKLVVLDEPNS---NLDEEGEQALANAIKALKARGITVVVITHRP 514 (544)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcc---ccCHHHHHHHHHHHHHHhhCCCEEEEEeCCH
Confidence 79999999 999999999999999986544 89999986
No 238
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.5e-14 Score=128.13 Aligned_cols=124 Identities=19% Similarity=0.273 Sum_probs=87.6
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc---cccceeeccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGE 211 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p---~~G~i~~~g~~~~~ 211 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. .+.| ++|+|+++|.++..
T Consensus 7 ~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~----------~~~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 7 QVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMN----------DLNPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred EEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccc----------ccCCCCCccceEEECCEECcC
Confidence 3466777787667889999888 89999999999999999999999964 1135 58999988865421
Q ss_pred cccccCCCCceeeeEEEEecC-----------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLS----------------------------------------------------------- 232 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~----------------------------------------------------------- 232 (276)
..... +...+.++++++.
T Consensus 77 ~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (252)
T PRK14239 77 PRTDT---VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQ 153 (252)
T ss_pred cccch---HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHH
Confidence 00000 0000011111110
Q ss_pred -------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 -------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 -------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|||.. ++|......+.+.+.++.+.. ++++||++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 207 (252)
T PRK14239 154 QQRVCIARVLATSPKIILLDEPTS---ALDPISAGKIEETLLGLKDDYTMLLVTRSM 207 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcc---ccCHHHHHHHHHHHHHHhhCCeEEEEECCH
Confidence 01179999999 999999999999999986533 99999986
No 239
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=2.4e-14 Score=127.32 Aligned_cols=115 Identities=24% Similarity=0.326 Sum_probs=88.9
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.+.|... .++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.....
T Consensus 4 ~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~------------~p~~G~v~i~g~~~~~~~~-- 68 (235)
T cd03299 4 ENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI------------KPDSGKILLNGKDITNLPP-- 68 (235)
T ss_pred EeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCEEcCcCCh--
Confidence 3455566543 678888887 89999999999999999999999965 8999999999987654221
Q ss_pred CCCCceeeeEEEEecCCCc-------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGGG------------------------------------------------------------- 235 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~~------------------------------------------------------------- 235 (276)
..+.++++++....
T Consensus 69 -----~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara 143 (235)
T cd03299 69 -----EKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARA 143 (235)
T ss_pred -----hHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHH
Confidence 11234444433211
Q ss_pred -------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 -------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 -------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.. ++|..+.+.+.+.+.++... + ++++||++
T Consensus 144 l~~~p~llllDEPt~---gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~ 190 (235)
T cd03299 144 LVVNPKILLLDEPFS---ALDVRTKEKLREELKKIRKEFGVTVLHVTHDF 190 (235)
T ss_pred HHcCCCEEEECCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 79999999 99999999999999998764 5 99999986
No 240
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.53 E-value=1.2e-14 Score=138.47 Aligned_cols=115 Identities=23% Similarity=0.273 Sum_probs=86.9
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc----cccccccccCCCC
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ----RVGEVSTKSGRGK 220 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~----~~~~vs~~~g~gk 220 (276)
...+++++++.+ +|++++|+|+||+|||||+++|.|.. +|++|+|+++|+ ++...+...- .+
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~------------~p~~G~I~idG~~~~~~i~~~~~~~l-~~ 102 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN------------PVSRGSVLVKDGDGSIDVANCDAATL-RR 102 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEECCEecccccccCCHHHH-HH
Confidence 334567777777 89999999999999999999999965 899999999986 3322221100 00
Q ss_pred ceeeeEEEEecCCCc-----------------------------------------------------------------
Q 023887 221 HTTRHVSLLPLSGGG----------------------------------------------------------------- 235 (276)
Q Consensus 221 ~tt~~~~~~~~~~~~----------------------------------------------------------------- 235 (276)
...+.+++++|.+..
T Consensus 103 ~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~ 182 (382)
T TIGR03415 103 LRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMD 182 (382)
T ss_pred HhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 011356666665322
Q ss_pred ---EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ---YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ---~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||.. ++|.....++.+.+.++.+. + ++++|||++
T Consensus 183 P~ILLlDEPts---~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 183 ADILLMDEPFS---ALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred CCEEEEECCCc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 79999999 99999999999999999864 5 999999863
No 241
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.53 E-value=3.3e-14 Score=123.49 Aligned_cols=123 Identities=24% Similarity=0.283 Sum_probs=83.6
Q ss_pred ceeEEEecCCc-----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++| .++
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~------------~~~~G~i~~~g-~i~ 69 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL------------EKLSGSVSVPG-SIA 69 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC------------CCCCCeEEEcC-EEE
Confidence 35566777653 5789999988 89999999999999999999999965 89999998887 222
Q ss_pred ccccccC-----------CCCcee-----e---eEEE-------------------Eec----------------CCCcE
Q 023887 211 EVSTKSG-----------RGKHTT-----R---HVSL-------------------LPL----------------SGGGY 236 (276)
Q Consensus 211 ~vs~~~g-----------~gk~tt-----~---~~~~-------------------~~~----------------~~~~~ 236 (276)
-+...+. .+.... . ...+ ..+ .+..+
T Consensus 70 ~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ll 149 (204)
T cd03250 70 YVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIY 149 (204)
T ss_pred EEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 2211100 000000 0 0000 000 11228
Q ss_pred EEecCCCCCCCCChhhHHHHHH-HHHHHhhcc--eEEEeeeC
Q 023887 237 LADTPGFNQPSLLKVTKQSLAQ-TFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 237 iiDtPg~~~~~l~~~~~~~l~~-~f~ei~~~~--ii~~~H~~ 275 (276)
++|||.. ++|....+.+.+ ++.+..+.+ +|++||++
T Consensus 150 llDEP~~---~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~ 188 (204)
T cd03250 150 LLDDPLS---AVDAHVGRHIFENCILGLLLNNKTRILVTHQL 188 (204)
T ss_pred EEeCccc---cCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 9999999 999988888877 566665555 89999985
No 242
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.53 E-value=1.6e-14 Score=143.89 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=93.3
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. ...++++++.+ +|++++++|+||+|||||+++|.| +|+|++|+|.++|+++.+
T Consensus 314 I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g------------~~~p~~G~i~~~g~~~~~ 381 (569)
T PRK10789 314 LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQR------------HFDVSEGDIRFHDIPLTK 381 (569)
T ss_pred EEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhc------------ccCCCCCEEEECCEEHhh
Confidence 345667778754 35789999888 899999999999999999999999 459999999999988765
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+... .+..+++++|++..
T Consensus 382 ~~~~~-----~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq 456 (569)
T PRK10789 382 LQLDS-----WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQ 456 (569)
T ss_pred CCHHH-----HHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHH
Confidence 43221 22333443333211
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 457 ~qRi~lARall~~~~illlDEpts---~LD~~~~~~i~~~l~~~~~~~tii~itH~~ 510 (569)
T PRK10789 457 KQRISIARALLLNAEILILDDALS---AVDGRTEHQILHNLRQWGEGRTVIISAHRL 510 (569)
T ss_pred HHHHHHHHHHhcCCCEEEEECccc---cCCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 79999999 999999999999998875433 99999986
No 243
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.4e-14 Score=128.58 Aligned_cols=121 Identities=17% Similarity=0.266 Sum_probs=87.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-----cccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~~~ 210 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|+++|.++.
T Consensus 10 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 10 TENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN------------DLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred EeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc------------cCCcCCCCceEEEECCEecc
Confidence 456677777667889999888 89999999999999999999999965 44 5899999887643
Q ss_pred ccccccCCCCceeeeEEEEecC----------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLS---------------------------------------------------------- 232 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~---------------------------------------------------------- 232 (276)
..+... +...+.++++++.
T Consensus 78 ~~~~~~---~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 154 (254)
T PRK14273 78 SNNFDI---LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGG 154 (254)
T ss_pred cccccH---HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHH
Confidence 100000 0000011111110
Q ss_pred --------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 --------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 --------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~tvii~sH~~ 209 (254)
T PRK14273 155 QQQRLCIARTLAIEPNVILMDEPTS---ALDPISTGKIEELIINLKESYTIIIVTHNM 209 (254)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCc---ccCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 01179999999 999999999999999996533 89999986
No 244
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.53 E-value=1.3e-14 Score=144.29 Aligned_cols=121 Identities=22% Similarity=0.325 Sum_probs=94.4
Q ss_pred cCceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.++.+.++|.. ...++++++.+ +|+.++|+|+||+|||||+++|+| +|+|.+|+|.++|.++.
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~g------------l~~p~~G~I~i~g~~i~ 405 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLR------------FYDPQSGRILLDGVDLR 405 (576)
T ss_pred EEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHh------------ccCCCCCEEEECCEEHH
Confidence 445677888854 35789999888 999999999999999999999999 45999999999998776
Q ss_pred ccccccCCCCceeeeEEEEecCCCc-------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------- 235 (276)
..+... .++.+++++|++..
T Consensus 406 ~~~~~~-----~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 406 QLDPAE-----LRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred hcCHHH-----HHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 544321 22344444443211
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 481 q~Qrl~laRal~~~~~ililDEpts---~lD~~~~~~i~~~l~~~~~~~t~IiitH~~ 535 (576)
T TIGR02204 481 QRQRIAIARAILKDAPILLLDEATS---ALDAESEQLVQQALETLMKGRTTLIIAHRL 535 (576)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCccc---ccCHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 79999999 999999888999998886433 99999975
No 245
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.2e-14 Score=129.37 Aligned_cols=127 Identities=16% Similarity=0.163 Sum_probs=88.1
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|..... -..|++|+|+++|.++.....
T Consensus 15 ~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-------p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 15 QVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELY-------PEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred EEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccC-------CCCCcceEEEECCEEcccccc
Confidence 3566777887667899999888 89999999999999999999999965100 001589999998876531000
Q ss_pred ccCCCCceeeeEEEEecC--------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLS-------------------------------------------------------------- 232 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~-------------------------------------------------------------- 232 (276)
.. ....+.++++++.
T Consensus 88 ~~---~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 164 (260)
T PRK10744 88 DI---ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQR 164 (260)
T ss_pred ch---HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHH
Confidence 00 0000011111110
Q ss_pred ----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 165 v~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~L~~~~~~~tiii~sH~~ 215 (260)
T PRK10744 165 LCIARGIAIRPEVLLLDEPCS---ALDPISTGRIEELITELKQDYTVVIVTHNM 215 (260)
T ss_pred HHHHHHHHCCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 01179999999 999999999999999996533 89999986
No 246
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.53 E-value=1.5e-14 Score=147.32 Aligned_cols=122 Identities=19% Similarity=0.246 Sum_probs=98.1
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. ...++++++.+ +|++++++|+||+|||||+|+|+| +|+|++|+|.++|.++.+
T Consensus 456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g------------~~~p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQR------------LYTPQHGQVLVDGVDLAI 523 (694)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhc------------CCCCCCceEEECCEehhh
Confidence 445678888853 34799999988 899999999999999999999999 459999999999998877
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++..
T Consensus 524 ~~~~~-----~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 524 ADPAW-----LRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred CCHHH-----HHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 65432 34455565554311
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||+++
T Consensus 599 ~qri~lARall~~~~ililDEpts---~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 653 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATS---ALDYESEALIMRNMREICRGRTVIIIAHRLS 653 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCc---CCCHHHHHHHHHHHHHHhCCCEEEEEeCChH
Confidence 79999999 999999999999999885433 999999863
No 247
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.7e-14 Score=128.09 Aligned_cols=123 Identities=17% Similarity=0.290 Sum_probs=88.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc---ccccceeecccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE---PILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~---p~~G~i~~~g~~~~~v 212 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|... +. |++|+|+++|.++...
T Consensus 7 ~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----------~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 7 LEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHD----------LVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred EEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhccc----------CCCCCCCceEEEECCEEcccc
Confidence 456777787667899999888 899999999999999999999999651 11 3689999988765321
Q ss_pred ccccCCCCceeeeEEEEecCC-----------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSG----------------------------------------------------------- 233 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~----------------------------------------------------------- 233 (276)
+... ...++.++++++..
T Consensus 77 ~~~~---~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (252)
T PRK14256 77 GVDP---VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQ 153 (252)
T ss_pred cCCh---HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHH
Confidence 0000 00011111111110
Q ss_pred --------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 234 --------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 234 --------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~---gLD~~~~~~l~~~l~~~~~~~tiiivsH~~ 207 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPAS---ALDPISTLKIEELIEELKEKYTIIIVTHNM 207 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHhCCcEEEEECCH
Confidence 1179999999 999999999999999997644 99999986
No 248
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.53 E-value=1e-14 Score=136.50 Aligned_cols=124 Identities=22% Similarity=0.203 Sum_probs=93.3
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc---ccceeecccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQR 208 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~ 208 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|. +|+|.++|.+
T Consensus 15 i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~------------~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 15 VKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL------------AANGRIGGSATFNGRE 82 (330)
T ss_pred EeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC------------CCCCCCCeEEEECCEE
Confidence 4555666632 34688899888 89999999999999999999999966 664 9999999987
Q ss_pred ccccccccCCCCceeeeEEEEecCCC------------------------------------------------------
Q 023887 209 VGEVSTKSGRGKHTTRHVSLLPLSGG------------------------------------------------------ 234 (276)
Q Consensus 209 ~~~vs~~~g~gk~tt~~~~~~~~~~~------------------------------------------------------ 234 (276)
+...+...- .+...+.+++++|+..
T Consensus 83 i~~~~~~~~-~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~ 161 (330)
T PRK09473 83 ILNLPEKEL-NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHE 161 (330)
T ss_pred CCcCCHHHH-HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCccc
Confidence 755432210 0001134555555421
Q ss_pred --------------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 --------------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 --------------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+|+|||.. +||.....++.+.+.++.+. + +|++|||++
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts---~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTT---ALDVTVQAQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 079999999 99999999999999999874 5 999999973
No 249
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.2e-14 Score=129.11 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=87.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc--
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV-- 212 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v-- 212 (276)
.++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.... ..+.|++|+|.++|.++...
T Consensus 6 ~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~-------~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 6 DVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEV-------IPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred EEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc-------ccCCCcceEEEECCEecccccc
Confidence 3566777887667889999888 8999999999999999999999996510 00013799999988765210
Q ss_pred ------------ccccC-----------------CCC--c-e-ee-------eEEE------------Eec---------
Q 023887 213 ------------STKSG-----------------RGK--H-T-TR-------HVSL------------LPL--------- 231 (276)
Q Consensus 213 ------------s~~~g-----------------~gk--~-t-t~-------~~~~------------~~~--------- 231 (276)
..... .+. . . .. ...+ ..+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLC 158 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 00000 000 0 0 00 0000 000
Q ss_pred -------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+|+|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 159 laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tviivsH~~ 207 (258)
T PRK14241 159 IARAIAVEPDVLLMDEPCS---ALDPISTLAIEDLINELKQDYTIVIVTHNM 207 (258)
T ss_pred HHHHHhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 011289999999 999999999999999996533 99999986
No 250
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.53 E-value=4.3e-14 Score=124.03 Aligned_cols=61 Identities=26% Similarity=0.334 Sum_probs=50.4
Q ss_pred eeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 138 EPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 138 ~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
..+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.
T Consensus 4 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~G~i~~~g~~~~ 66 (218)
T cd03290 4 TNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM------------QTLEGKVHWSNKNES 66 (218)
T ss_pred eeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCCCeEEECCcccc
Confidence 34556665 345788888887 89999999999999999999999965 899999999887553
No 251
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.1e-14 Score=145.07 Aligned_cols=121 Identities=18% Similarity=0.294 Sum_probs=104.0
Q ss_pred cCceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.|+.+.++|... +.++++++.+ +|+++|+|||||+||||+.++|.+ +|+|++|+|.+||.++.
T Consensus 466 IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~r------------fY~PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 466 IEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLR------------FYDPTSGRILLDGVPIS 533 (716)
T ss_pred EEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHH------------hcCCCCCeEEECCeehh
Confidence 4577888999755 4689999998 999999999999999999999997 88999999999999999
Q ss_pred ccccccCCCCceeeeEEEEecCCCc-------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------- 235 (276)
++..+. .+++++++.|++-+
T Consensus 534 ~~~~~~-----lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGG 608 (716)
T KOG0058|consen 534 DINHKY-----LRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGG 608 (716)
T ss_pred hcCHHH-----HHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccch
Confidence 987654 77899999887622
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+|+||.+. .||..+...+.+.+..+.+.- +|+++|-+
T Consensus 609 QKQRIAIARALlr~P~VLILDEATS---ALDaeSE~lVq~aL~~~~~~rTVlvIAHRL 663 (716)
T KOG0058|consen 609 QKQRIAIARALLRNPRVLILDEATS---ALDAESEYLVQEALDRLMQGRTVLVIAHRL 663 (716)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhh---hcchhhHHHHHHHHHHhhcCCeEEEEehhh
Confidence 69999999 999888888888888776644 99999976
No 252
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.2e-14 Score=125.81 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=92.6
Q ss_pred EEEecCCcc-chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 140 LFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 140 ~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
+..+|+... ++++++|.. +|+++++.|+||+||||++++|...+ .|++|+++++|.++..-+..
T Consensus 7 l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL------------~P~~G~v~idg~d~~~~p~~-- 72 (245)
T COG4555 7 LTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL------------IPDSGKVTIDGVDTVRDPSF-- 72 (245)
T ss_pred hhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc------------cCCCceEEEeecccccChHH--
Confidence 344555443 678888887 89999999999999999999999966 99999999999887664422
Q ss_pred CCCceeeeEEEEecCCCc--------------------------------------------------------------
Q 023887 218 RGKHTTRHVSLLPLSGGG-------------------------------------------------------------- 235 (276)
Q Consensus 218 ~gk~tt~~~~~~~~~~~~-------------------------------------------------------------- 235 (276)
.+++++.++-..+.
T Consensus 73 ----vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 73 ----VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ----HhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 44556655522221
Q ss_pred ------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|+|.. ++|-.+...+.+.+..++..| ++++||.|
T Consensus 149 vh~P~i~vlDEP~s---GLDi~~~r~~~dfi~q~k~egr~viFSSH~m 193 (245)
T COG4555 149 VHDPSILVLDEPTS---GLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM 193 (245)
T ss_pred hcCCCeEEEcCCCC---CccHHHHHHHHHHHHHhhcCCcEEEEecccH
Confidence 79999999 999999999999999999877 99999987
No 253
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.6e-14 Score=131.02 Aligned_cols=125 Identities=18% Similarity=0.259 Sum_probs=88.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcc-cccccceeecccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWF-EPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~-~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... .. .|++|+|+++|.++...+.
T Consensus 42 i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--------~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 42 ARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDL--------IDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred EEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCc--------ccCCCCceEEEECCEEcccccc
Confidence 456677776667889999888 8999999999999999999999996510 00 1689999998876532100
Q ss_pred ccCCCCceeeeEEEEecC--------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLS-------------------------------------------------------------- 232 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~-------------------------------------------------------------- 232 (276)
.. +...+.++++++.
T Consensus 114 ~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 114 DP---VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred ch---HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 00 0000111111110
Q ss_pred --------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 --------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 --------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 191 LAraL~~~p~lLLLDEPts---~LD~~~~~~l~~~L~~~~~~~tiii~tH~~ 239 (285)
T PRK14254 191 IARAIAPDPEVILMDEPAS---ALDPVATSKIEDLIEELAEEYTVVIVTHNM 239 (285)
T ss_pred HHHHHHcCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 01179999999 999999999999999997654 99999985
No 254
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.52 E-value=5.9e-13 Score=128.32 Aligned_cols=107 Identities=29% Similarity=0.392 Sum_probs=79.1
Q ss_pred cchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCcc
Q 023887 71 DPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKL 148 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 148 (276)
..++.++|.+++|+|+..+... ...+.++| +..++|+++|+||+|+.+.+.. ...+..+++ +++.+|+.++.
T Consensus 75 ~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l---~~~~~piilv~NK~D~~~~~~~---~~~~~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 75 ELAIEEADVILFVVDGRAGLTPADEEIAKIL---RKSNKPVILVVNKVDGPDEEAD---AYEFYSLGLGEPYPISAEHGR 148 (435)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCcEEEEEECccCccchhh---HHHHHhcCCCCCEEEEeeCCC
Confidence 3467899999999999764222 22344444 4568999999999998653221 133456777 48899999998
Q ss_pred chHHHHhhc-c-------------CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 149 GLDSLLQRL-R-------------DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 149 ~l~~l~~~l-~-------------g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++...+ + .-.++++|.+|+|||||+|+|++..
T Consensus 149 gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~ 197 (435)
T PRK00093 149 GIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEE 197 (435)
T ss_pred CHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 888776654 1 2479999999999999999999854
No 255
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.52 E-value=2.4e-14 Score=126.97 Aligned_cols=109 Identities=21% Similarity=0.297 Sum_probs=76.5
Q ss_pred HHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc-------cCCCCcee
Q 023887 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK-------SGRGKHTT 223 (276)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~-------~g~gk~tt 223 (276)
++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.. ...-...|
T Consensus 3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~t 70 (230)
T TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA------------QPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLT 70 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCChhheEEecCcccCCCCC
Confidence 445555 89999999999999999999999965 89999999998765432110 00000000
Q ss_pred --eeEEE------------------------Eec---------------------------CCCcEEEecCCCCCCCCCh
Q 023887 224 --RHVSL------------------------LPL---------------------------SGGGYLADTPGFNQPSLLK 250 (276)
Q Consensus 224 --~~~~~------------------------~~~---------------------------~~~~~iiDtPg~~~~~l~~ 250 (276)
..+.+ +.+ .+..+|+|||.. ++|.
T Consensus 71 v~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~---gLD~ 147 (230)
T TIGR01184 71 VRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFG---ALDA 147 (230)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc---CCCH
Confidence 00000 000 001179999999 9999
Q ss_pred hhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 251 VTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 251 ~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
...+.+.+.+.++.+. + +|++||++
T Consensus 148 ~~~~~l~~~l~~~~~~~~~tii~~sH~~ 175 (230)
T TIGR01184 148 LTRGNLQEELMQIWEEHRVTVLMVTHDV 175 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999999999764 5 89999986
No 256
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.5e-14 Score=134.86 Aligned_cols=118 Identities=24% Similarity=0.242 Sum_probs=87.8
Q ss_pred EEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCC
Q 023887 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~ 218 (276)
+.++|++.. + ++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++........
T Consensus 6 l~k~~~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~------------~p~~G~I~~~g~~~~~~~~~~~- 70 (352)
T PRK11144 6 FKQQLGDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT------------RPQKGRIVLNGRVLFDAEKGIC- 70 (352)
T ss_pred EEEEeCCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEccccccccc-
Confidence 455665432 2 567666 89999999999999999999999965 8999999999987643211000
Q ss_pred CCceeeeEEEEecCCCc--------------------------------------------------------------E
Q 023887 219 GKHTTRHVSLLPLSGGG--------------------------------------------------------------Y 236 (276)
Q Consensus 219 gk~tt~~~~~~~~~~~~--------------------------------------------------------------~ 236 (276)
.+...+.++++++.... +
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ll 150 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELL 150 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 00022345565554211 7
Q ss_pred EEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 237 LADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 237 iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
++|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 151 LLDEPts---~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~ 189 (352)
T PRK11144 151 LMDEPLA---SLDLPRKRELLPYLERLAREINIPILYVSHSL 189 (352)
T ss_pred EEcCCcc---cCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 9999999 99999999999999999865 5 99999986
No 257
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.52 E-value=1.8e-14 Score=130.79 Aligned_cols=122 Identities=19% Similarity=0.236 Sum_probs=87.9
Q ss_pred ceeEEEecC---------CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 137 YEPLFCSVE---------SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~---------~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
++.+.+.|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|
T Consensus 6 ~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~sG~i~~~g 73 (268)
T PRK10419 6 VSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE------------SPSQGNVSWRG 73 (268)
T ss_pred EeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECC
Confidence 345566665 245788999888 89999999999999999999999965 89999999999
Q ss_pred ccccccccccCCCCceeeeEEEEecC------------------------------------------------------
Q 023887 207 QRVGEVSTKSGRGKHTTRHVSLLPLS------------------------------------------------------ 232 (276)
Q Consensus 207 ~~~~~vs~~~g~gk~tt~~~~~~~~~------------------------------------------------------ 232 (276)
.++.......- +...+.++++++.
T Consensus 74 ~~~~~~~~~~~--~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 151 (268)
T PRK10419 74 EPLAKLNRAQR--KAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQ 151 (268)
T ss_pred EeccccChhHH--HHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCcc
Confidence 86543211000 0000011111110
Q ss_pred ------------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 233 ------------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 233 ------------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.++ + +|++||++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~---~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~ 212 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVS---NLDLVLQAGVIRLLKKLQQQFGTACLFITHDL 212 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCc---ccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH
Confidence 00179999999 99999999999999999864 4 89999985
No 258
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.4e-14 Score=130.63 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=88.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc--
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV-- 212 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v-- 212 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... ....|++|+|+++|.++...
T Consensus 23 ~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p-------~~~~~~~G~i~~~g~~i~~~~~ 95 (276)
T PRK14271 23 AAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK-------VSGYRYSGDVLLGGRSIFNYRD 95 (276)
T ss_pred EEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc-------CCCCCCceEEEECCEEccccch
Confidence 4567788887777899999988 8999999999999999999999996510 00014789999888654321
Q ss_pred -----------ccccCCCC-------------c--ee------------eeEEEE------------ecC----------
Q 023887 213 -----------STKSGRGK-------------H--TT------------RHVSLL------------PLS---------- 232 (276)
Q Consensus 213 -----------s~~~g~gk-------------~--tt------------~~~~~~------------~~~---------- 232 (276)
+.....-. + .+ ....+. .++
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred hHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 00000000 0 00 000000 000
Q ss_pred ------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|+|.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 176 ral~~~p~lllLDEPt~---~LD~~~~~~l~~~L~~~~~~~tiiivsH~~ 222 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTS---ALDPTTTEKIEEFIRSLADRLTVIIVTHNL 222 (276)
T ss_pred HHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 01179999999 999999999999999987644 99999986
No 259
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.52 E-value=1.8e-15 Score=130.85 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=101.3
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
..+..+|++...++++++.+ +|+++++.||||+||||.++++.|.. +|++|+|++++.++...+-.
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv------------~~d~G~i~ld~~diT~lPm~- 74 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV------------RPDSGKILLDDEDITKLPMH- 74 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE------------ecCCceEEECCcccccCChH-
Confidence 34567788888889999887 89999999999999999999999966 99999999999998876533
Q ss_pred CCCCceeeeEEEEecCCCc-------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGGG------------------------------------------------------------- 235 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~~------------------------------------------------------------- 235 (276)
+..+..++|++|+...
T Consensus 75 ---~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIA 151 (243)
T COG1137 75 ---KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA 151 (243)
T ss_pred ---HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHH
Confidence 2255667777776422
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. +.|++...++.+....+++.| |+++-|+.
T Consensus 152 RaLa~~P~fiLLDEPFA---GVDPiaV~dIq~iI~~L~~rgiGvLITDHNV 199 (243)
T COG1137 152 RALAANPKFILLDEPFA---GVDPIAVIDIQRIIKHLKDRGIGVLITDHNV 199 (243)
T ss_pred HHHhcCCCEEEecCCcc---CCCchhHHHHHHHHHHHHhCCceEEEccccH
Confidence 69999999 999999999999999999987 89998874
No 260
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.52 E-value=2.5e-14 Score=128.93 Aligned_cols=127 Identities=18% Similarity=0.126 Sum_probs=87.9
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. ...++++++.+ +|+.++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 20 i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~G~i~i~g~~i~~ 87 (257)
T cd03288 20 IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV------------DIFDGKIVIDGIDISK 87 (257)
T ss_pred EEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc------------CCCCCeEEECCEEhhh
Confidence 345667777765 45788888887 89999999999999999999999955 8999999998876533
Q ss_pred ccc------------ccCCCCce------------ee---------eE----EEE-------------ecC---------
Q 023887 212 VST------------KSGRGKHT------------TR---------HV----SLL-------------PLS--------- 232 (276)
Q Consensus 212 vs~------------~~g~gk~t------------t~---------~~----~~~-------------~~~--------- 232 (276)
.+. .+..-..+ .. .. ..+ .++
T Consensus 88 ~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~l 167 (257)
T cd03288 88 LPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCL 167 (257)
T ss_pred CCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHH
Confidence 110 00000000 00 00 000 000
Q ss_pred -------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 233 -------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 233 -------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+..+++|+|.. ++|....+.+.+.+.++.+.. ++++||+++
T Consensus 168 aral~~~p~llllDEPt~---gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~ 216 (257)
T cd03288 168 ARAFVRKSSILIMDEATA---SIDMATENILQKVVMTAFADRTVVTIAHRVS 216 (257)
T ss_pred HHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHhcCCCEEEEEecChH
Confidence 11179999999 999999999999998875422 999999863
No 261
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.51 E-value=2.7e-14 Score=130.15 Aligned_cols=124 Identities=22% Similarity=0.281 Sum_probs=89.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc--------ccceeeccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI--------LGSKWFEDQ 207 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~--------~G~i~~~g~ 207 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|+ +|+|.++|.
T Consensus 4 ~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~------------~p~~~~~~~~~~G~i~~~g~ 71 (272)
T PRK13547 4 ADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL------------TGGGAPRGARVTGDVTLNGE 71 (272)
T ss_pred EEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCcccccccCCceEEEECCE
Confidence 456777787777899999988 89999999999999999999999965 776 899988886
Q ss_pred ccccc------------ccccC------------CC--Cce---------------------------eeeEE-------
Q 023887 208 RVGEV------------STKSG------------RG--KHT---------------------------TRHVS------- 227 (276)
Q Consensus 208 ~~~~v------------s~~~g------------~g--k~t---------------------------t~~~~------- 227 (276)
++... +.... .+ .+. .+...
T Consensus 72 ~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGEL 151 (272)
T ss_pred EcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 54321 00000 00 000 00000
Q ss_pred --------EEe--------cCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 228 --------LLP--------LSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 228 --------~~~--------~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+.. ..+..+|+|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~ 215 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTA---ALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP 215 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 000 1345579999999 99999999999999999865 5 89999986
No 262
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.51 E-value=6e-15 Score=130.45 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=86.4
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
.+...|+....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|..........+
T Consensus 27 ~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~p~~G~i~~~g~~~~~~~~~~~ 94 (224)
T cd03220 27 GRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY------------PPDSGTVTVRGRVSSLLGLGGG 94 (224)
T ss_pred hhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEEchhhccccc
Confidence 3444566666788888888 89999999999999999999999965 8999999999875432111000
Q ss_pred CCCcee--eeE----------------------EEEec---------------------------CCCcEEEecCCCCCC
Q 023887 218 RGKHTT--RHV----------------------SLLPL---------------------------SGGGYLADTPGFNQP 246 (276)
Q Consensus 218 ~gk~tt--~~~----------------------~~~~~---------------------------~~~~~iiDtPg~~~~ 246 (276)
.....| ..+ ..+.+ ++..+|+|||..
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~--- 171 (224)
T cd03220 95 FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLA--- 171 (224)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc---
Confidence 000000 000 00000 011179999999
Q ss_pred CCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 247 SLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 247 ~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
++|..+.+.+.+.+.++.+.+ +|++||++
T Consensus 172 gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~ 202 (224)
T cd03220 172 VGDAAFQEKCQRRLRELLKQGKTVILVSHDP 202 (224)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 999999999999999997765 99999985
No 263
>PLN03130 ABC transporter C family member; Provisional
Probab=99.51 E-value=2.3e-14 Score=157.09 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=103.9
Q ss_pred cCceeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|... ..++++++.+ +|++++|||+||+|||||+++|.| +|+|++|+|.+||.++.+
T Consensus 1238 I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r------------l~~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130 1238 IKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR------------IVELERGRILIDGCDISK 1305 (1622)
T ss_pred EEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC------------cCCCCCceEEECCEeccc
Confidence 4567888889643 5899999998 899999999999999999999999 569999999999999988
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++++++++|++-.
T Consensus 1306 i~l~~-----LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130 1306 FGLMD-----LRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred CCHHH-----HHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence 87544 66778888887522
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.+..+.. +|+++|.++
T Consensus 1381 QrlaLARALLr~p~ILILDEATS---aLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~ 1434 (1622)
T PLN03130 1381 QLLSLARALLRRSKILVLDEATA---AVDVRTDALIQKTIREEFKSCTMLIIAHRLN 1434 (1622)
T ss_pred HHHHHHHHHHcCCCEEEEECCCC---CCCHHHHHHHHHHHHHHCCCCEEEEEeCChH
Confidence 69999999 999999999999998876543 999999864
No 264
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.51 E-value=2.6e-14 Score=140.15 Aligned_cols=124 Identities=17% Similarity=0.212 Sum_probs=88.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc--cccceeeccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|.++|+++...+
T Consensus 4 i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~------------~~~~~~G~i~~~g~~~~~~~ 71 (500)
T TIGR02633 4 MKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY------------PHGTWDGEIYWSGSPLKASN 71 (500)
T ss_pred EEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCCCeEEEECCEECCCCC
Confidence 355677777667899999888 89999999999999999999999965 54 7999999886543211
Q ss_pred -------------cccCCCCcee------------------------e-------eEEE---E------ecC--------
Q 023887 214 -------------TKSGRGKHTT------------------------R-------HVSL---L------PLS-------- 232 (276)
Q Consensus 214 -------------~~~g~gk~tt------------------------~-------~~~~---~------~~~-------- 232 (276)
..+..-...| . ...+ . .++
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 72 IRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred HHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHH
Confidence 0000000000 0 0000 0 000
Q ss_pred --------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 --------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 --------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.| +|++||++
T Consensus 152 iA~al~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tviiitHd~ 201 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSS---SLTEKETEILLDIIRDLKAHGVACVYISHKL 201 (500)
T ss_pred HHHHHhhCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 01179999999 999999999999999998776 89999986
No 265
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.51 E-value=6.3e-14 Score=127.99 Aligned_cols=149 Identities=28% Similarity=0.349 Sum_probs=96.6
Q ss_pred hhccccEEEEEEEcCCCCCCHH-HHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCce-eEEEecCCccc-
Q 023887 73 PVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYE-PLFCSVESKLG- 149 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~-~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~- 149 (276)
.+.++|.++.|-|++.|..+-+ .+++++ ..++.+||+||+||++..+.....+.++.-.+. .+..+......
T Consensus 43 ~l~~~D~iiEvrDaRiPLssrn~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~ 117 (335)
T KOG2485|consen 43 RLPLVDCIIEVRDARIPLSSRNELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNK 117 (335)
T ss_pred hcccccEEEEeeccccCCccccHHHHHhc-----CCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhh
Confidence 4679999999999999976644 677776 378999999999999976666555555543332 22222211111
Q ss_pred --------hHHHHhhc--------cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 150 --------LDSLLQRL--------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 150 --------l~~l~~~l--------~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+..+...+ .+-.++++|.||+|||||||++..... ......
T Consensus 118 ~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~L----------------------rk~k~a- 174 (335)
T KOG2485|consen 118 QVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHL----------------------RKKKAA- 174 (335)
T ss_pred ccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHh----------------------hhccce-
Confidence 11111111 235799999999999999999987541 111111
Q ss_pred cccCCCCceeeeEEE-Eec--CCCcEEEecCCCCCCCCCh
Q 023887 214 TKSGRGKHTTRHVSL-LPL--SGGGYLADTPGFNQPSLLK 250 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~-~~~--~~~~~iiDtPg~~~~~l~~ 250 (276)
..|..+..|+.++. +.. .+-.+++||||+..|++.+
T Consensus 175 -~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 175 -RVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred -eccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCC
Confidence 12333347776665 333 3467999999998887643
No 266
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.51 E-value=2.6e-14 Score=130.56 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=90.9
Q ss_pred CceeEEEecC--CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 136 GYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 136 ~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|.|.. + .+|+|+++|.++...
T Consensus 4 ~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~------------~-~~G~I~i~g~~i~~~ 70 (275)
T cd03289 4 TVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL------------N-TEGDIQIDGVSWNSV 70 (275)
T ss_pred EEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc------------C-CCcEEEECCEEhhhC
Confidence 3567777773 345799999988 89999999999999999999999964 5 689999999877543
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.++++++.+..
T Consensus 71 ~~~~-----lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~q 145 (275)
T cd03289 71 PLQK-----WRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQ 145 (275)
T ss_pred CHHH-----HhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 2111 12233444333211
Q ss_pred --------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 --------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 --------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|+|.. ++|..+...+.+.+.++.... +|++||+++
T Consensus 146 rl~LaRall~~p~illlDEpts---~LD~~~~~~l~~~l~~~~~~~tii~isH~~~ 198 (275)
T cd03289 146 LMCLARSVLSKAKILLLDEPSA---HLDPITYQVIRKTLKQAFADCTVILSEHRIE 198 (275)
T ss_pred HHHHHHHHhcCCCEEEEECccc---cCCHHHHHHHHHHHHHhcCCCEEEEEECCHH
Confidence 79999999 999999999999999875432 999999863
No 267
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=4.8e-14 Score=126.23 Aligned_cols=123 Identities=19% Similarity=0.267 Sum_probs=86.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc---cccceeecccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p---~~G~i~~~g~~~~~v 212 (276)
++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|... ..| ++|+|+++|.++...
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~----------~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14240 6 VKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMND----------LIPSVKIEGEVLLDGQDIYKS 75 (250)
T ss_pred EEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc----------ccCCCCCceEEEECCEEcccc
Confidence 456777777667889999988 899999999999999999999999641 012 689999988765320
Q ss_pred ccccCCCCceeeeEEEEecC------------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLS------------------------------------------------------------ 232 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~------------------------------------------------------------ 232 (276)
+... ...+..++++++.
T Consensus 76 ~~~~---~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 76 DIDV---NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQ 152 (250)
T ss_pred ccch---HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHH
Confidence 0000 0000001111110
Q ss_pred ------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|....+.+.+.+.++.+.. ++++||++
T Consensus 153 qrv~laral~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 205 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTS---ALDPISTLKIEELIQELKKDYTIVIVTHNM 205 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 01179999999 999999999999999986532 99999986
No 268
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=4.8e-14 Score=126.26 Aligned_cols=61 Identities=18% Similarity=0.374 Sum_probs=51.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-----cccceeeccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRV 209 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~~ 209 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|.++|.++
T Consensus 7 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~------------~~~~~~~~~G~i~~~g~~~ 73 (252)
T PRK14272 7 AQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH------------DLTPGARVTGRILLDGQDI 73 (252)
T ss_pred EeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC------------CCCcCCCCceeEEECCEEc
Confidence 456677777667899999888 89999999999999999999999965 44 379988888665
No 269
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.8e-14 Score=129.35 Aligned_cols=126 Identities=18% Similarity=0.221 Sum_probs=88.9
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc-----ccccceeecccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (276)
+.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|+++|.+
T Consensus 20 l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~~~~~~G~I~~~g~~ 87 (267)
T PRK14235 20 MRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN------------DTIDGCRVTGKITLDGED 87 (267)
T ss_pred EEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc------------ccccCCCCceEEEECCEE
Confidence 34567788887767889999888 89999999999999999999999965 4 489999999876
Q ss_pred cccc--------------ccccCCCCcee----------------------------eeEEEE------------ec---
Q 023887 209 VGEV--------------STKSGRGKHTT----------------------------RHVSLL------------PL--- 231 (276)
Q Consensus 209 ~~~v--------------s~~~g~gk~tt----------------------------~~~~~~------------~~--- 231 (276)
+... ...+..-..+. ....+. .+
T Consensus 88 i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 167 (267)
T PRK14235 88 IYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGG 167 (267)
T ss_pred CcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 5321 00000000000 000000 00
Q ss_pred -------------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -------------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -------------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+|+|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~L~~l~~~~tiiivtH~~ 222 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCS---ALDPIATAKVEELIDELRQNYTIVIVTHSM 222 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCc---CCCHHHHHHHHHHHHHHhcCCeEEEEEcCH
Confidence 001179999999 999999999999999997633 99999986
No 270
>PLN03232 ABC transporter C family member; Provisional
Probab=99.51 E-value=2.3e-14 Score=156.33 Aligned_cols=122 Identities=24% Similarity=0.235 Sum_probs=103.1
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. +..++++++.+ +|++++|||+||+|||||+++|.| +|+|++|+|.+||.++.+
T Consensus 1235 I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r------------l~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232 1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR------------IVELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred EEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCcCCCceEEECCEEhhh
Confidence 456788888954 36899999998 899999999999999999999999 569999999999999988
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++++++++|++-.
T Consensus 1303 i~~~~-----lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1377 (1495)
T PLN03232 1303 FGLTD-----LRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQR 1377 (1495)
T ss_pred CCHHH-----HHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHH
Confidence 76543 56778888887522
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.+..+.. +|+++|.++
T Consensus 1378 QrlaLARALLr~~~ILILDEATS---aLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ 1431 (1495)
T PLN03232 1378 QLLSLARALLRRSKILVLDEATA---SVDVRTDSLIQRTIREEFKSCTMLVIAHRLN 1431 (1495)
T ss_pred HHHHHHHHHHhCCCEEEEECCcc---cCCHHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 69999999 999999999999988875533 999999863
No 271
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.51 E-value=6.6e-13 Score=127.60 Aligned_cols=107 Identities=25% Similarity=0.452 Sum_probs=80.7
Q ss_pred cchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCcc
Q 023887 71 DPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKL 148 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 148 (276)
..++.++|.+++|+|+..+... ...+.++| +..++|+++|+||+|+.+.+... ..+.++++ +++.+|+.++.
T Consensus 73 ~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l---~~~~~piilVvNK~D~~~~~~~~---~~~~~lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 73 EIAIEEADVILFVVDGREGLTPEDEEIAKWL---RKSGKPVILVANKIDGKKEDAVA---AEFYSLGFGEPIPISAEHGR 146 (429)
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHH---HHhCCCEEEEEECccCCcccccH---HHHHhcCCCCeEEEeCCcCC
Confidence 3467899999999999764322 22455555 45689999999999997654221 33566788 78999999999
Q ss_pred chHHHHhhc----c--C---------CEEEEEecCCCChhHHHHHHcCCC
Q 023887 149 GLDSLLQRL----R--D---------QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 149 ~l~~l~~~l----~--g---------~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++...+ + . -.++++|.+|+|||||+|.|++..
T Consensus 147 gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~ 196 (429)
T TIGR03594 147 GIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE 196 (429)
T ss_pred ChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCC
Confidence 888776653 1 1 269999999999999999999854
No 272
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=3.6e-14 Score=127.87 Aligned_cols=126 Identities=19% Similarity=0.206 Sum_probs=87.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... ....|++|+|.++|.++......
T Consensus 15 ~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~-------~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 15 VENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDL-------IKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred EeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCc-------ccCCCcceEEEECCEEcccccch
Confidence 455666776666789999888 8999999999999999999999996510 00014799999988765321000
Q ss_pred cCCCCceeeeEEEEecC---------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLS--------------------------------------------------------------- 232 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~--------------------------------------------------------------- 232 (276)
. ....+.++++++.
T Consensus 88 ~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 88 V---VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred H---HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence 0 0000011111110
Q ss_pred --------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 --------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 --------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 165 laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~l~~~~tiiivsH~~ 213 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTS---ALDPISTARIEDLIMNLKKDYTIVIVTHNM 213 (258)
T ss_pred HHHHHHcCCCEEEEeCCCc---ccCHHHHHHHHHHHHHHhhCCEEEEEECCH
Confidence 01179999999 999999999999999986533 99999986
No 273
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=4e-14 Score=126.79 Aligned_cols=124 Identities=20% Similarity=0.297 Sum_probs=86.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc-----ccccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~~~ 210 (276)
++.+.++|+....++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|.++|+++.
T Consensus 7 ~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~~p~~~~~G~v~i~g~~~~ 74 (251)
T PRK14251 7 AKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN------------DDIENIKITGEIKFEGQNIY 74 (251)
T ss_pred EEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc------------ccccCCCcceEEEECCEEcc
Confidence 456777777667888999887 89999999999999999999999965 3 47899999887642
Q ss_pred cc--------------ccccCC-----------C-------Cc--ee-------eeEEEE-------e-----c------
Q 023887 211 EV--------------STKSGR-----------G-------KH--TT-------RHVSLL-------P-----L------ 231 (276)
Q Consensus 211 ~v--------------s~~~g~-----------g-------k~--tt-------~~~~~~-------~-----~------ 231 (276)
.. ...+.. + .. .. ....+. . +
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 75 GSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred cccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH
Confidence 10 000000 0 00 00 000000 0 0
Q ss_pred ----------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ----------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ----------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 155 r~~laral~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~tiiiisH~~ 206 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTS---ALDPISSSEIEETLMELKHQYTFIMVTHNL 206 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCc---cCCHHHHHHHHHHHHHHHcCCeEEEEECCH
Confidence 001179999999 999999999999999986533 99999986
No 274
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=4.5e-14 Score=126.57 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=86.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc-----ccccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~~~ 210 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|.++|.++.
T Consensus 7 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~------------~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 7 SKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMN------------DLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred EEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhcc------------CcccCCCCccEEEECCEecc
Confidence 455667776667889999888 89999999999999999999999965 4 37899999887653
Q ss_pred ccccccCCCCceeeeEEEEec-----------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPL----------------------------------------------------------- 231 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~----------------------------------------------------------- 231 (276)
..+... ....+.++++++
T Consensus 75 ~~~~~~---~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 151 (251)
T PRK14270 75 DKDVDV---VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGG 151 (251)
T ss_pred cccccH---HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 210000 000000000000
Q ss_pred -------------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -------------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -------------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+++|||.. ++|......+.+.+.++.+.. ++++||++
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~---~LD~~~~~~l~~~L~~~~~~~tiiivsH~~ 206 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTS---ALDPISTLKIEDLMVELKKEYTIVIVTHNM 206 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhCCeEEEEEcCH
Confidence 011179999999 999999999999999987644 99999986
No 275
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.50 E-value=3.9e-14 Score=128.78 Aligned_cols=130 Identities=21% Similarity=0.229 Sum_probs=87.5
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc--
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV-- 212 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v-- 212 (276)
.++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... ..+.|++|+|.++|.++...
T Consensus 26 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-------~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 26 DTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVEL-------VPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred EEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccC-------CCCCCCceeEEECCEEcccccc
Confidence 3456677776667788888887 8999999999999999999999996510 00016899999988765210
Q ss_pred ------------cccc------------------CCCCc-e-eee-------E----EE--------Eec----------
Q 023887 213 ------------STKS------------------GRGKH-T-TRH-------V----SL--------LPL---------- 231 (276)
Q Consensus 213 ------------s~~~------------------g~gk~-t-t~~-------~----~~--------~~~---------- 231 (276)
...+ +.... . ... . .+ ..+
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~l 178 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCI 178 (271)
T ss_pred cHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHH
Confidence 0000 00000 0 000 0 00 000
Q ss_pred ------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+|+|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 179 araL~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~tiiivsH~~ 226 (271)
T PRK14238 179 ARCLAIEPDVILMDEPTS---ALDPISTLKVEELVQELKKDYSIIIVTHNM 226 (271)
T ss_pred HHHHHcCCCEEEEeCCCC---cCCHHHHHHHHHHHHHHHcCCEEEEEEcCH
Confidence 011189999999 999999999999999987633 99999986
No 276
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.50 E-value=2.8e-14 Score=141.92 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=90.7
Q ss_pred cCceeEEEecCCc-----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccc
Q 023887 135 WGYEPLFCSVESK-----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (276)
Q Consensus 135 ~~~~~~~~s~~~~-----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (276)
+.++.+.++|.+. ..++++++.+ +|++++++|+||+|||||+|+|+| +|+|++|+|.++|.+
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g------------~~~p~~G~i~~~g~~ 405 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG------------LYIPQEGEILLDGAA 405 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEE
Confidence 4567788888642 4789999887 899999999999999999999999 559999999999988
Q ss_pred ccccccccCCCCceeeeEEEEecCC-------------------------------------------------------
Q 023887 209 VGEVSTKSGRGKHTTRHVSLLPLSG------------------------------------------------------- 233 (276)
Q Consensus 209 ~~~vs~~~g~gk~tt~~~~~~~~~~------------------------------------------------------- 233 (276)
+...+... .+..+++++|+.
T Consensus 406 i~~~~~~~-----~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRla 480 (555)
T TIGR01194 406 VSADSRDD-----YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLA 480 (555)
T ss_pred CCCCCHHH-----HHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHH
Confidence 76543211 112222322221
Q ss_pred ---------CcEEEecCCCCCCCCChhhHHHHHHHH-HHHhhcc--eEEEeeeC
Q 023887 234 ---------GGYLADTPGFNQPSLLKVTKQSLAQTF-PEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ---------~~~iiDtPg~~~~~l~~~~~~~l~~~f-~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||+. ++|..+.+.+.+.+ +++...+ +|++||++
T Consensus 481 laRall~~~~ililDE~ts---~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~ 531 (555)
T TIGR01194 481 LICAWLEDRPILLFDEWAA---DQDPAFKRFFYEELLPDLKRQGKTIIIISHDD 531 (555)
T ss_pred HHHHHHcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence 0179999999 99999888887654 4565444 99999985
No 277
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=6e-14 Score=125.76 Aligned_cols=61 Identities=25% Similarity=0.392 Sum_probs=51.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc-----ccceeeccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQRV 209 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~-----~G~i~~~g~~~ 209 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|+ +|+|+++|.++
T Consensus 7 ~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~------------~~~~~~~~~G~v~~~g~~~ 73 (251)
T PRK14249 7 IRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN------------DIVSGARLEGAVLLDNENI 73 (251)
T ss_pred EEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc------------CccccCCcccEEEECCEEc
Confidence 456677777667889999887 89999999999999999999999966 554 69999888765
No 278
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=4.6e-14 Score=126.32 Aligned_cols=121 Identities=19% Similarity=0.334 Sum_probs=86.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc-----ccccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~~~ 210 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|.++|.++.
T Consensus 6 ~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~------------~~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 6 IENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMN------------DHIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred EEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccc------------cCCCCCCcceEEEECCEEcc
Confidence 456667776667788999887 89999999999999999999999965 4 38899999886543
Q ss_pred ccccccCCCCceeeeEEEEecC----------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLS---------------------------------------------------------- 232 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~---------------------------------------------------------- 232 (276)
..+... ......++++++.
T Consensus 74 ~~~~~~---~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14262 74 DPQLDV---TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGG 150 (250)
T ss_pred cchhhH---HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHH
Confidence 210000 0000011111110
Q ss_pred --------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 --------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 --------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|+|.. ++|..+...+.+.+.++.+.. ++++||++
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~tili~sH~~ 205 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTS---ALDPIATQRIEKLLEELSENYTIVIVTHNI 205 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcc---ccCHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 11179999999 999999999999999987533 99999986
No 279
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.50 E-value=4.5e-14 Score=127.79 Aligned_cols=129 Identities=19% Similarity=0.217 Sum_probs=87.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc---
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV--- 212 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v--- 212 (276)
++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|..... -..|++|+|+++|.++...
T Consensus 13 i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-------~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 13 TENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLI-------PGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred EeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccc-------CCCCCceEEEECCEEccccccC
Confidence 456677777667889999988 89999999999999999999999964100 0014789999988665210
Q ss_pred -----------ccccCCCCce--------------e-----------eeEEEE-------e-----c-------------
Q 023887 213 -----------STKSGRGKHT--------------T-----------RHVSLL-------P-----L------------- 231 (276)
Q Consensus 213 -----------s~~~g~gk~t--------------t-----------~~~~~~-------~-----~------------- 231 (276)
......-..+ . ....+. . +
T Consensus 86 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lara 165 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARA 165 (264)
T ss_pred hHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHH
Confidence 0000000000 0 000000 0 0
Q ss_pred ---CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ---SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ---~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 166 l~~~p~lllLDEPt~---~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~ 210 (264)
T PRK14243 166 IAVQPEVILMDEPCS---ALDPISTLRIEELMHELKEQYTIIIVTHNM 210 (264)
T ss_pred HhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 011279999999 999999999999999997644 99999986
No 280
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.50 E-value=4.2e-14 Score=140.25 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=90.5
Q ss_pred cCceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|.+ ...++++++.+ +|++++++|+||+|||||+++|+| +|+|++|+|.++|.++.+.
T Consensus 323 i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g------------~~~~~~G~i~~~g~~~~~~ 390 (547)
T PRK10522 323 LELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTG------------LYQPQSGEILLDGKPVTAE 390 (547)
T ss_pred EEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEECCCC
Confidence 456778888864 45799999988 899999999999999999999999 4599999999999877643
Q ss_pred ccccCCCCceeeeEEEEecCC-----------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSG----------------------------------------------------------- 233 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~----------------------------------------------------------- 233 (276)
+... .+.++++++|++
T Consensus 391 ~~~~-----~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~ 465 (547)
T PRK10522 391 QPED-----YRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALA 465 (547)
T ss_pred CHHH-----HhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHh
Confidence 2111 111222222211
Q ss_pred ---CcEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 234 ---GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 234 ---~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
..+++|||+. ++|..+.+.+.+.+.+..+ .+ +|++||++
T Consensus 466 ~~~~ililDE~ts---~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~ 510 (547)
T PRK10522 466 EERDILLLDEWAA---DQDPHFRREFYQVLLPLLQEMGKTIFAISHDD 510 (547)
T ss_pred cCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHHhCCCEEEEEEech
Confidence 1179999999 9999988888887765543 34 99999975
No 281
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.50 E-value=3.4e-14 Score=130.66 Aligned_cols=127 Identities=22% Similarity=0.246 Sum_probs=100.2
Q ss_pred eeEEEecCCc----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 138 EPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 138 ~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.+.++|... ..++++++.+ +|++++|||.|||||||+.++|+|.... .-....+|+|.|+|+++..+
T Consensus 5 ~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~-------~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 5 KNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK-------PNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred eeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCC-------CCCeEeeeEEEECCcccccC
Confidence 4455555442 4689999998 8999999999999999999999997720 00124679999999998888
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+++ .+.+..-+.+++++|++..
T Consensus 78 ~~~-~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSG 156 (316)
T COG0444 78 SEK-ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSG 156 (316)
T ss_pred CHH-HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCC
Confidence 764 2223345788999987421
Q ss_pred ------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 236 ------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 236 ------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
+|.|||+- +||-..+.++.+++.++.+ .| +|++|||+
T Consensus 157 GMrQRV~IAmala~~P~LlIADEPTT---ALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl 214 (316)
T COG0444 157 GMRQRVMIAMALALNPKLLIADEPTT---ALDVTVQAQILDLLKELQREKGTALILITHDL 214 (316)
T ss_pred cHHHHHHHHHHHhCCCCEEEeCCCcc---hhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 69999999 9999999999999999997 45 99999997
No 282
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.50 E-value=4.7e-14 Score=127.87 Aligned_cols=127 Identities=17% Similarity=0.263 Sum_probs=88.1
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.... ..-.|++|+|.++|.++.....
T Consensus 22 ~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-------~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 22 STKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDT-------IDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred EEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc-------cCCCCcceEEEECCEEcccccC
Confidence 3456777777677889999888 8999999999999999999999996510 0002589999999876532000
Q ss_pred ccCCCCceeeeEEEEecC--------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLS-------------------------------------------------------------- 232 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~-------------------------------------------------------------- 232 (276)
.. ....+.++++++.
T Consensus 95 ~~---~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 95 NV---YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQR 171 (267)
T ss_pred Ch---HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHH
Confidence 00 0000011111110
Q ss_pred ----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 172 l~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~tiii~tH~~ 222 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPAS---ALDPISTMQLEETMFELKKNYTIIIVTHNM 222 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 01179999999 999999999999999996533 99999986
No 283
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=4.9e-14 Score=127.50 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=89.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-----cccceeecccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~~~ 210 (276)
.+...+.|++...++++++.+ +|++++|+|+||+|||||+++|+|.. .| ++|+|+++|.++.
T Consensus 11 ~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 11 CKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMN------------DLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred EEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHccc------------ccccCCCCceEEEECCEecc
Confidence 355666777767889999888 89999999999999999999999965 44 7899999987654
Q ss_pred ccccccCCCCceeeeEEEEecCC---------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSG--------------------------------------------------------- 233 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~--------------------------------------------------------- 233 (276)
..+... ....+.++++++..
T Consensus 79 ~~~~~~---~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 79 GKGVDP---VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred ccccch---HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 211000 00111222222211
Q ss_pred -------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 234 -------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 234 -------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
..+++|+|.. ++|......+.+.+.++.+.. +|++||+++
T Consensus 156 qrv~laral~~~p~llllDEPts---gLD~~~~~~l~~~l~~~~~~~tii~isH~~~ 209 (261)
T PRK14263 156 QRLCIARAIATEPEVLLLDEPCS---ALDPIATRRVEELMVELKKDYTIALVTHNMQ 209 (261)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 0179999999 999999999999999996533 899999863
No 284
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=5.7e-14 Score=126.78 Aligned_cols=60 Identities=23% Similarity=0.331 Sum_probs=50.8
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
+.++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|
T Consensus 11 i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~------------~~~~G~v~~~G 71 (257)
T PRK14246 11 FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI------------EIYDSKIKVDG 71 (257)
T ss_pred eeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCcCceeEcC
Confidence 55678888898888899999998 89999999999999999999999965 77776554443
No 285
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=2.8e-14 Score=130.33 Aligned_cols=114 Identities=20% Similarity=0.248 Sum_probs=90.5
Q ss_pred ecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCc
Q 023887 143 SVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (276)
Q Consensus 143 s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~ 221 (276)
.+.....+++++..+ .|+.+++.|+||+|||||+++|+|.. .|++|.|.++|+.....+...-
T Consensus 11 ~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe------------~p~~G~I~~~~~~l~D~~~~~~---- 74 (345)
T COG1118 11 RFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE------------TPDAGRIRLNGRVLFDVSNLAV---- 74 (345)
T ss_pred hcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC------------CCCCceEEECCEeccchhccch----
Confidence 334444566677776 79999999999999999999999977 8999999999994443332111
Q ss_pred eeeeEEEEecCCCc------------------------------------------------------------------
Q 023887 222 TTRHVSLLPLSGGG------------------------------------------------------------------ 235 (276)
Q Consensus 222 tt~~~~~~~~~~~~------------------------------------------------------------------ 235 (276)
..+.+++++|...+
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~ 154 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAV 154 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhc
Confidence 34677777775422
Q ss_pred ----EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ----YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ----~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+++|||.- .+|..-..++++-+.++++. + .+++|||.
T Consensus 155 eP~vLLLDEPf~---ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~ 198 (345)
T COG1118 155 EPKVLLLDEPFG---ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ 198 (345)
T ss_pred CCCeEeecCCch---hhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH
Confidence 69999999 99988899999999999986 6 89999996
No 286
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=6e-14 Score=125.88 Aligned_cols=123 Identities=17% Similarity=0.282 Sum_probs=87.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc---cccceeecccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p---~~G~i~~~g~~~~~v 212 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|... ..| ++|+|.++|.++...
T Consensus 9 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~----------~~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 9 TKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMND----------LIPGCRITGDILYNGENIMDS 78 (253)
T ss_pred EeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhcccc----------CCCCCCcceEEEECCEEcccc
Confidence 456677777667899999888 899999999999999999999999641 013 589999988765432
Q ss_pred ccccCCCCceeeeEEEEec-------------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPL------------------------------------------------------------- 231 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~------------------------------------------------------------- 231 (276)
+..... ....++++++
T Consensus 79 ~~~~~~---~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 79 GADVVA---LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred ccchhh---hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHH
Confidence 100000 0000111000
Q ss_pred -----------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -----------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -----------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
++..+++|||.. ++|....+.+.+.+.++.+.. ++++||++
T Consensus 156 qrv~laral~~~p~lllLDEP~~---gLD~~~~~~l~~~l~~~~~~~tvii~sh~~ 208 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCS---ALDPIATAKIEDLIEDLKKEYTVIIVTHNM 208 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHhhCceEEEEEcCH
Confidence 011179999999 999999999999999987643 99999985
No 287
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=4.7e-14 Score=126.16 Aligned_cols=129 Identities=21% Similarity=0.206 Sum_probs=86.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc----
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE---- 211 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~---- 211 (276)
++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... ....|++|++.++|.++..
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-------~~~~~~~G~v~~~g~~~~~~~~~ 78 (249)
T PRK14253 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDL-------IEGVKITGKLTMDGEDIYGNIDV 78 (249)
T ss_pred EeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhccc-------ccCCCCceEEEECCEEcccccch
Confidence 455667777667899999988 8999999999999999999999996510 0001468999888865421
Q ss_pred ---------cccccCCCCce--------------e------e-------eEEEE------------ec------------
Q 023887 212 ---------VSTKSGRGKHT--------------T------R-------HVSLL------------PL------------ 231 (276)
Q Consensus 212 ---------vs~~~g~gk~t--------------t------~-------~~~~~------------~~------------ 231 (276)
+...+..-..+ . . ...+. .+
T Consensus 79 ~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 158 (249)
T PRK14253 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIAR 158 (249)
T ss_pred HHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHH
Confidence 00000000000 0 0 00000 00
Q ss_pred ----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+++|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 159 al~~~p~llllDEP~~---~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 204 (249)
T PRK14253 159 TIAMEPDVILMDEPTS---ALDPIATHKIEELMEELKKNYTIVIVTHSM 204 (249)
T ss_pred HHHcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 011179999999 999999999999999997644 99999986
No 288
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=7.2e-14 Score=125.19 Aligned_cols=126 Identities=18% Similarity=0.260 Sum_probs=86.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc---cccceeecccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p---~~G~i~~~g~~~~~v 212 (276)
++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|... +.| ++|+|+++|.++...
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~----------~~~~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14255 8 SSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMND----------LIPGVTITGNVSLRGQNIYAP 77 (252)
T ss_pred EEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc----------cCCCCCcccEEEEcCEEcccc
Confidence 456677777667889999887 899999999999999999999999641 124 589999888765310
Q ss_pred --------------ccccCC----------------C--C-ce-eee-------EEE-------EecC------------
Q 023887 213 --------------STKSGR----------------G--K-HT-TRH-------VSL-------LPLS------------ 232 (276)
Q Consensus 213 --------------s~~~g~----------------g--k-~t-t~~-------~~~-------~~~~------------ 232 (276)
...... + . .. ... ..+ ....
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv 157 (252)
T PRK14255 78 NEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRV 157 (252)
T ss_pred cccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHH
Confidence 000000 0 0 00 000 000 0000
Q ss_pred ---------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ---------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ---------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 158 ~laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tii~vsH~~ 207 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTS---ALDPISSTQIENMLLELRDQYTIILVTHSM 207 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHHhCCEEEEEECCH
Confidence 01179999999 999999999999999997644 99999986
No 289
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=7.3e-14 Score=123.07 Aligned_cols=121 Identities=22% Similarity=0.269 Sum_probs=96.5
Q ss_pred ceeEEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.++++.... +.++.++..+ +|++.+++||||+|||||.++|+|.. -|++++|+|.++|+++.+++.
T Consensus 6 I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p----------~Y~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 6 IKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP----------KYEVTEGEILFDGEDILELSP 75 (251)
T ss_pred EeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC----------CceEecceEEECCcccccCCH
Confidence 45677777774 8999999998 89999999999999999999999987 799999999999999887654
Q ss_pred ccCCCCceeeeEEEEecC--------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLS-------------------------------------------------------------- 232 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~-------------------------------------------------------------- 232 (276)
..- .+..+-+-.|.
T Consensus 76 ~ER----Ar~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkK 151 (251)
T COG0396 76 DER----ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKK 151 (251)
T ss_pred hHH----HhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHH
Confidence 321 11111111111
Q ss_pred -----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeee
Q 023887 233 -----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHM 274 (276)
Q Consensus 233 -----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~ 274 (276)
++..|+|+|-. ++|-..-+.+.+.+.++++.+ ++++||+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DS---GLDIdalk~V~~~i~~lr~~~~~~liITHy 203 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDS---GLDIDALKIVAEGINALREEGRGVLIITHY 203 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCc---CccHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 11169999999 999888899999999999876 9999996
No 290
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.49 E-value=4e-14 Score=120.07 Aligned_cols=111 Identities=28% Similarity=0.336 Sum_probs=92.7
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
++.++++.+ +|+.++|||+||+||||||-.|+|.. +|++|+|.+.|+++..+.+ +++.+-..++++
T Consensus 25 IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd------------~~ssGeV~l~G~~L~~ldE-d~rA~~R~~~vG 91 (228)
T COG4181 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD------------DPSSGEVRLLGQPLHKLDE-DARAALRARHVG 91 (228)
T ss_pred EeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC------------CCCCceEEEcCcchhhcCH-HHHHHhhcccee
Confidence 466666666 89999999999999999999999977 9999999999999988874 456666667888
Q ss_pred EEecCCCc--------------------------------------------------------------------EEEe
Q 023887 228 LLPLSGGG--------------------------------------------------------------------YLAD 239 (276)
Q Consensus 228 ~~~~~~~~--------------------------------------------------------------------~iiD 239 (276)
+++|++.. ++.|
T Consensus 92 fVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfAD 171 (228)
T COG4181 92 FVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFAD 171 (228)
T ss_pred EEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEecc
Confidence 88887533 6999
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
+|+- ++|..+-+.+.+++-++.. .| ++++|||.
T Consensus 172 EPTG---NLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~ 207 (228)
T COG4181 172 EPTG---NLDRATGDKIADLLFALNRERGTTLVLVTHDP 207 (228)
T ss_pred CCCC---CcchhHHHHHHHHHHHHhhhcCceEEEEeCCH
Confidence 9999 8999888888887666654 56 89999985
No 291
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=4.7e-14 Score=127.09 Aligned_cols=125 Identities=22% Similarity=0.317 Sum_probs=87.0
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc--c---cccceeeccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--P---ILGSKWFEDQRV 209 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~--p---~~G~i~~~g~~~ 209 (276)
.++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. + | ++|+|+++|.++
T Consensus 14 ~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~p~~~~~G~i~~~g~~~ 81 (259)
T PRK14274 14 QINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI------------QMVPNVKLTGEMNYNGSNI 81 (259)
T ss_pred EEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc------------cCCCCCCCceEEEECCEEc
Confidence 4556777777667888998888 89999999999999999999999965 3 3 589998888765
Q ss_pred cc--------------cccccCC----------------C---Cc-eee-------eEEEE-------e-----c-----
Q 023887 210 GE--------------VSTKSGR----------------G---KH-TTR-------HVSLL-------P-----L----- 231 (276)
Q Consensus 210 ~~--------------vs~~~g~----------------g---k~-tt~-------~~~~~-------~-----~----- 231 (276)
.. ++..... + +. ... ...+. . +
T Consensus 82 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 82 LKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQ 161 (259)
T ss_pred cccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 31 0000000 0 00 000 00000 0 0
Q ss_pred -----------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 -----------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 -----------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+++|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 162 qrv~laral~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~tiiivtH~~ 214 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTS---ALDPVSTRKIEELILKLKEKYTIVIVTHNM 214 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence 001179999999 999999999999999997633 99999986
No 292
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=3.8e-14 Score=122.52 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=92.0
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+..+|++...+++++..+ +|++++|+||||+|||||+.++.+.. ++++|+|+++|+++...+.+.
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~------------~~d~G~i~i~g~~~~~~~s~~ 72 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL------------KKDSGEITIDGLELTSTPSKE 72 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc------------cccCceEEEeeeecccCChHH
Confidence 45667788888999999988 89999999999999999999999966 899999999998876522110
Q ss_pred -------------------------------CCCCc---------------------------------eeeeEEEEe-c
Q 023887 217 -------------------------------GRGKH---------------------------------TTRHVSLLP-L 231 (276)
Q Consensus 217 -------------------------------g~gk~---------------------------------tt~~~~~~~-~ 231 (276)
.+||- .+..++|+. |
T Consensus 73 LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQ 152 (252)
T COG4604 73 LAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQ 152 (252)
T ss_pred HHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeec
Confidence 00111 111111111 1
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+-.-.++|||.. +||-....++.+.++.+.++ + ++++-||.|
T Consensus 153 dTdyvlLDEPLN---NLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN 197 (252)
T COG4604 153 DTDYVLLDEPLN---NLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197 (252)
T ss_pred cCcEEEecCccc---ccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc
Confidence 112269999999 89887788888999888864 5 999999975
No 293
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=6e-14 Score=128.59 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=86.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc--ccccceeeccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~--p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|... ..+ |++|+|.++|.++....
T Consensus 42 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---------~~p~~~~~G~I~~~g~~i~~~~ 112 (286)
T PRK14275 42 AKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMND---------LIPSCHTTGALMFDGEDIYGKF 112 (286)
T ss_pred EeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---------cCCCCCCceEEEECCEEhhhcc
Confidence 456677776666788998888 899999999999999999999999641 012 58999999887653210
Q ss_pred cccCCCCceeeeEEEEec--------------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPL-------------------------------------------------------------- 231 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~-------------------------------------------------------------- 231 (276)
.... .....++++++
T Consensus 113 ~~~~---~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 113 TDEV---LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred cchH---HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 0000 00000000000
Q ss_pred ----------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ----------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ----------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
++..+|+|||.. ++|....+.+.+.+.++.... +|++||++
T Consensus 190 rv~LAraL~~~p~lllLDEPt~---gLD~~~~~~l~~~L~~~~~~~tvIivsH~~ 241 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTS---ALDPKATAKIEDLIQELRGSYTIMIVTHNM 241 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 001179999999 999999999999999987533 99999986
No 294
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.48 E-value=4.7e-14 Score=154.19 Aligned_cols=122 Identities=17% Similarity=0.173 Sum_probs=103.2
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. +..++++++.+ +|++++|+|+||+|||||+++|.+ +|+|++|+|.+||.++.+
T Consensus 1285 I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r------------l~~~~~G~I~IdG~dI~~ 1352 (1522)
T TIGR00957 1285 VEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR------------INESAEGEIIIDGLNIAK 1352 (1522)
T ss_pred EEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CccCCCCeEEECCEEccc
Confidence 456788889965 35899999998 899999999999999999999999 569999999999999998
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++-.
T Consensus 1353 i~~~~-----LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1353 IGLHD-----LRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred cCHHH-----HHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 87544 66778888887522
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.+..+.. +|+++|.++
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTS---alD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ 1481 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATA---AVDLETDNLIQSTIRTQFEDCTVLTIAHRLN 1481 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 69999999 999999888999888765543 999999763
No 295
>PTZ00243 ABC transporter; Provisional
Probab=99.48 E-value=5.1e-14 Score=154.02 Aligned_cols=122 Identities=20% Similarity=0.243 Sum_probs=102.9
Q ss_pred cCceeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|..+ ..++++++.+ +|++++|+|+||+|||||+++|.| +|+|++|+|.+||.++..
T Consensus 1309 I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlr------------l~~p~~G~I~IDG~di~~ 1376 (1560)
T PTZ00243 1309 LVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR------------MVEVCGGEIRVNGREIGA 1376 (1560)
T ss_pred EEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCcEEEECCEEccc
Confidence 5578888999653 4799999998 899999999999999999999999 569999999999999988
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++-+
T Consensus 1377 i~l~~-----LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243 1377 YGLRE-----LRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred CCHHH-----HHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence 76543 56778888887422
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+|+|||+. ++|..+.+.+.+.+.+..+.. +|+++|.++
T Consensus 1452 QrLaLARALL~~~~~ILlLDEATS---aLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ 1506 (1560)
T PTZ00243 1452 QLMCMARALLKKGSGFILMDEATA---NIDPALDRQIQATVMSAFSAYTVITIAHRLH 1506 (1560)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHCCCCEEEEEeccHH
Confidence 69999999 999999999999888865433 999999763
No 296
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.48 E-value=1.8e-14 Score=132.09 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=92.7
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
++.+.++.+ .|++.+++|-||||||||+++|.+.. +|++|+|+++|.++..++... ...-.++.++
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi------------ept~G~ilv~g~di~~~~~~~-Lr~~Rr~~~s 109 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI------------EPTRGEILVDGKDIAKLSAAE-LRELRRKKIS 109 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC------------CCCCceEEECCcchhcCCHHH-HHHHHhhhhh
Confidence 566666666 79999999999999999999999965 999999999999998877542 2333456777
Q ss_pred EEecCCCc--------------------------------------------------------------------EEEe
Q 023887 228 LLPLSGGG--------------------------------------------------------------------YLAD 239 (276)
Q Consensus 228 ~~~~~~~~--------------------------------------------------------------------~iiD 239 (276)
|++|.+++ +++|
T Consensus 110 MVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMD 189 (386)
T COG4175 110 MVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMD 189 (386)
T ss_pred hhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEec
Confidence 88876544 6999
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
||.. .||+....++.+-+-++... . |+++|||++
T Consensus 190 EaFS---ALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd 226 (386)
T COG4175 190 EAFS---ALDPLIRTEMQDELLELQAKLKKTIVFITHDLD 226 (386)
T ss_pred Cchh---hcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 9999 99999999988888888764 3 999999985
No 297
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1e-13 Score=124.26 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=50.5
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
+.+.+.|.....++++++.+ +|++++|+|+||+|||||+++|+|..... -..|++|+|+++|.++
T Consensus 9 ~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~-------~~~~~~G~i~~~g~~i 74 (251)
T PRK14244 9 KNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFV-------PNCKVKGELDIDGIDV 74 (251)
T ss_pred eeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccC-------CCCCcceEEEECCEeh
Confidence 45666776667889999887 89999999999999999999999965100 0015789999888654
No 298
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=7.7e-14 Score=124.88 Aligned_cols=124 Identities=16% Similarity=0.236 Sum_probs=87.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc--ccccceeeccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~--p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|... .++ |++|+|+++|.++...+
T Consensus 6 ~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 6 VENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMND---------LIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc---------cCCCCCCccEEEECCEEccccc
Confidence 456777777667889999888 899999999999999999999999641 012 48999999997653210
Q ss_pred cccCCCCceeeeEEEEecC-------------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLS------------------------------------------------------------- 232 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~------------------------------------------------------------- 232 (276)
... ....+.++++++.
T Consensus 77 ~~~---~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 77 VDV---VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ 153 (250)
T ss_pred ccH---HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHH
Confidence 000 0000011111110
Q ss_pred -----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 -----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 -----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|+|.. ++|......+.+.+.++.+.. ++++||++
T Consensus 154 rv~laral~~~p~llllDEP~~---gLD~~~~~~l~~~l~~~~~~~tiii~sh~~ 205 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCS---ALDPISTTKIEDLIHKLKEDYTIVIVTHNM 205 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 01179999999 999999999999999996533 99999986
No 299
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.48 E-value=1.1e-13 Score=125.14 Aligned_cols=117 Identities=25% Similarity=0.268 Sum_probs=83.1
Q ss_pred EEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccccee-----------ecc
Q 023887 140 LFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------FED 206 (276)
Q Consensus 140 ~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~-----------~~g 206 (276)
+.++|+.+ ..++++++ + +|++++|+|+||+|||||+|+|+|.. +|++|+|+ ++|
T Consensus 6 ~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~------------~p~~G~I~~~~~~~~~~~~~~g 72 (255)
T cd03236 6 PVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKL------------KPNLGKFDDPPDWDEILDEFRG 72 (255)
T ss_pred cceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCCceEeeccccchhhhhccC
Confidence 44566544 46788874 5 89999999999999999999999955 99999996 667
Q ss_pred ccccccccccCCCCceeeeEEEE----ec---------------------------------------------------
Q 023887 207 QRVGEVSTKSGRGKHTTRHVSLL----PL--------------------------------------------------- 231 (276)
Q Consensus 207 ~~~~~vs~~~g~gk~tt~~~~~~----~~--------------------------------------------------- 231 (276)
.++........++ + ..+.++ .+
T Consensus 73 ~~~~~~~~~~~~~-~--~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 73 SELQNYFTKLLEG-D--VKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred chhhhhhHHhhhc-c--cceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 6654321100000 0 000110 00
Q ss_pred -------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 -------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 -------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
++..+++|||.. ++|......+.+.+.++.+.+ +|++||++
T Consensus 150 laral~~~p~illlDEPts---~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~ 199 (255)
T cd03236 150 IAAALARDADFYFFDEPSS---YLDIKQRLNAARLIRELAEDDNYVLVVEHDL 199 (255)
T ss_pred HHHHHHhCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 001179999999 999999999999999998765 99999986
No 300
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1e-13 Score=125.97 Aligned_cols=123 Identities=20% Similarity=0.277 Sum_probs=88.3
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc-----ccccceeecccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-----PILGSKWFEDQR 208 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~-----p~~G~i~~~g~~ 208 (276)
+.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|+++|.+
T Consensus 26 l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~------------~~~~~~~~~G~i~i~g~~ 93 (272)
T PRK14236 26 LEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMN------------DLVDNCRIEGEIRLDGQN 93 (272)
T ss_pred EEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC------------CCccCCCCceEEEECCEE
Confidence 34567777887667888988888 89999999999999999999999965 4 489999998876
Q ss_pred ccccccccCCCCceeeeEEEEecC--------------------------------------------------------
Q 023887 209 VGEVSTKSGRGKHTTRHVSLLPLS-------------------------------------------------------- 232 (276)
Q Consensus 209 ~~~vs~~~g~gk~tt~~~~~~~~~-------------------------------------------------------- 232 (276)
+....... ......++++++.
T Consensus 94 i~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 170 (272)
T PRK14236 94 IYDKKVDV---AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLS 170 (272)
T ss_pred CcccccCH---HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCC
Confidence 53200000 0000001111100
Q ss_pred ----------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 ----------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ----------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 171 ~Gq~qrv~laral~~~p~lllLDEPt~---gLD~~~~~~l~~~L~~~~~~~tiiivtH~~ 227 (272)
T PRK14236 171 GGQQQRLVIARAIAIEPEVLLLDEPTS---ALDPISTLKIEELITELKSKYTIVIVTHNM 227 (272)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhCCeEEEEeCCH
Confidence 01179999999 999999999999999997633 99999986
No 301
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.47 E-value=5.6e-14 Score=141.58 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=85.8
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++...+...- +...+.+
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~------------~p~~G~I~~~g~~i~~~~~~~~--~~~~~~i 403 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV------------ESQGGEIIFNGQRIDTLSPGKL--QALRRDI 403 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCcEEEECCEECCcCCHHHH--HHhcCCe
Confidence 4688888887 89999999999999999999999966 8999999999986643321000 0011234
Q ss_pred EEEecCCC------------------------------------------------------------------------
Q 023887 227 SLLPLSGG------------------------------------------------------------------------ 234 (276)
Q Consensus 227 ~~~~~~~~------------------------------------------------------------------------ 234 (276)
++++|++.
T Consensus 404 ~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~ 483 (623)
T PRK10261 404 QFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPK 483 (623)
T ss_pred EEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 44444310
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.+|+|||.. +||......+.+++.++.+. + +|++|||++
T Consensus 484 llllDEPts---~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~ 525 (623)
T PRK10261 484 VIIADEAVS---ALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA 525 (623)
T ss_pred EEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 079999999 99999999999999999764 5 999999963
No 302
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.47 E-value=9.4e-14 Score=123.02 Aligned_cols=111 Identities=25% Similarity=0.303 Sum_probs=76.9
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc----cccceeecccccccc----------cc
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP----ILGSKWFEDQRVGEV----------ST 214 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p----~~G~i~~~g~~~~~v----------s~ 214 (276)
++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|+++|.++... ..
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 69 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL------------PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQ 69 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCccCccccEEEECCEechhhhhhhheeEEEec
Confidence 34556666 89999999999999999999999966 67 899999998664321 11
Q ss_pred ccC--CCCcee---------eeEEE-----------------Ee------------c----------------CCCcEEE
Q 023887 215 KSG--RGKHTT---------RHVSL-----------------LP------------L----------------SGGGYLA 238 (276)
Q Consensus 215 ~~g--~gk~tt---------~~~~~-----------------~~------------~----------------~~~~~ii 238 (276)
.+. .....+ ..... +. + ++..+++
T Consensus 70 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllL 149 (230)
T TIGR02770 70 NPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIA 149 (230)
T ss_pred CchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 100 000000 00000 00 0 0011799
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
|||.. ++|....+.+.+.+.++.+. + +|++||++
T Consensus 150 DEPt~---~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 186 (230)
T TIGR02770 150 DEPTT---DLDVVNQARVLKLLRELRQLFGTGILLITHDL 186 (230)
T ss_pred cCCcc---ccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999 99999999999999999864 5 89999986
No 303
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=9.1e-14 Score=124.49 Aligned_cols=124 Identities=13% Similarity=0.212 Sum_probs=85.9
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc--cccceeeccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~~~~vs 213 (276)
++.+.+.|.+...++++++.+ +|++++|+|+||+|||||+++|+|... .++| ++|+|.++|.++...+
T Consensus 6 ~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---------~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 6 ARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMND---------LIPATRLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhc---------ccCCCCCceEEEECCEeccccc
Confidence 455667776666788898887 899999999999999999999998521 1243 5899998887653210
Q ss_pred cccCCCCceeeeEEEEecC-------------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLS------------------------------------------------------------- 232 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~------------------------------------------------------------- 232 (276)
... +...+.++++++.
T Consensus 77 ~~~---~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 77 VQV---DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQ 153 (250)
T ss_pred ccH---HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHH
Confidence 000 0000001110000
Q ss_pred -----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 -----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 -----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 154 rv~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~tiiivtH~~ 205 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPAS---ALDPISTAKVEELIHELKKDYTIVIVTHNM 205 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 01179999999 999999999999999986533 99999986
No 304
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.47 E-value=4.8e-14 Score=147.43 Aligned_cols=123 Identities=20% Similarity=0.307 Sum_probs=103.2
Q ss_pred hcCceeEEEecCCcc---chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 134 TWGYEPLFCSVESKL---GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 134 ~~~~~~~~~s~~~~~---~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
.+.++.+.++|...+ .++++++.+ +|+++++||+||+||||++++|.+ +|+|++|+|.++|.++
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~R------------fydP~~G~V~idG~di 417 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLAR------------FYDPTSGEVLIDGEDI 417 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHH------------hcCCCCceEEEcCccc
Confidence 345788999998764 577788877 899999999999999999999998 7899999999999999
Q ss_pred cccccccCCCCceeeeEEEEecCCCc------------------------------------------------------
Q 023887 210 GEVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------ 235 (276)
Q Consensus 210 ~~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------ 235 (276)
.++..+. .+..++++.|++-.
T Consensus 418 ~~~~~~~-----lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSG 492 (1228)
T KOG0055|consen 418 RNLNLKW-----LRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSG 492 (1228)
T ss_pred hhcchHH-----HHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCCh
Confidence 8876554 66688888887522
Q ss_pred ------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+|+|||+. .||..+...+.+.+....+-- .|+++|.|.
T Consensus 493 GQKQRIAIARalv~~P~ILLLDEaTS---aLD~~se~~Vq~ALd~~~~grTTivVaHRLS 549 (1228)
T KOG0055|consen 493 GQKQRIAIARALVRNPKILLLDEATS---ALDAESERVVQEALDKASKGRTTIVVAHRLS 549 (1228)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCccc---ccCHHHHHHHHHHHHHhhcCCeEEEEeeehh
Confidence 79999999 999999888888887765532 899999873
No 305
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.47 E-value=5e-14 Score=153.19 Aligned_cols=133 Identities=17% Similarity=0.122 Sum_probs=102.8
Q ss_pred cCceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCC------------------------
Q 023887 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHAS------------------------ 186 (276)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~------------------------ 186 (276)
+.++.+.++|.+ .+.++++++.+ +|++++|||+||+|||||+++|.|.....
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccc
Confidence 456788899963 35799999998 89999999999999999999999944210
Q ss_pred ------------------ccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCc-------------
Q 023887 187 ------------------DAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG------------- 235 (276)
Q Consensus 187 ------------------~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~------------- 235 (276)
.+...+.-..|++|+|.++|.++.+++... .++.+++++|++-+
T Consensus 1246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~-----lR~~i~~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKD-----LRNLFSIVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHH-----HHhhccEeCCCCccccccHHHHHhcCC
Confidence 000011111237999999999998877543 67788888887532
Q ss_pred -----------------------------------------------------------EEEecCCCCCCCCChhhHHHH
Q 023887 236 -----------------------------------------------------------YLADTPGFNQPSLLKVTKQSL 256 (276)
Q Consensus 236 -----------------------------------------------------------~iiDtPg~~~~~l~~~~~~~l 256 (276)
+|+|||+. +||..+.+.+
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTS---aLD~~sE~~I 1397 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATS---SLDSNSEKLI 1397 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc---ccCHHHHHHH
Confidence 79999999 9999999999
Q ss_pred HHHHHHHhh-cc--eEEEeeeC
Q 023887 257 AQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 257 ~~~f~ei~~-~~--ii~~~H~~ 275 (276)
.+.+.++.. .+ +|+++|.+
T Consensus 1398 ~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1398 EKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred HHHHHHHhccCCCEEEEEechH
Confidence 999999852 34 99999975
No 306
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.2e-13 Score=124.58 Aligned_cols=124 Identities=19% Similarity=0.257 Sum_probs=88.4
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-----cccceeecccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (276)
+.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|.++|++
T Consensus 8 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~------------~~~~~~~~~G~i~~~g~~ 75 (259)
T PRK14260 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS------------ELEGPVKVEGVVDFFGQN 75 (259)
T ss_pred EEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc------------CcccCCccceEEEECCEe
Confidence 34567777887667889999888 89999999999999999999999965 43 58999998876
Q ss_pred ccccccccCCCCceeeeEEEEecC--------------------------------------------------------
Q 023887 209 VGEVSTKSGRGKHTTRHVSLLPLS-------------------------------------------------------- 232 (276)
Q Consensus 209 ~~~vs~~~g~gk~tt~~~~~~~~~-------------------------------------------------------- 232 (276)
+...+... +.....++++++.
T Consensus 76 i~~~~~~~---~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 152 (259)
T PRK14260 76 IYDPRINI---NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLS 152 (259)
T ss_pred ccccccch---HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCC
Confidence 53200000 0000001111100
Q ss_pred ----------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 233 ----------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 233 ----------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+..+++|||.. ++|......+.+.+.++.+.. +|++||+++
T Consensus 153 ~G~~qrv~laral~~~p~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~ 210 (259)
T PRK14260 153 GGQQQRLCIARALAIKPKVLLMDEPCS---ALDPIATMKVEELIHSLRSELTIAIVTHNMQ 210 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 01179999999 999999999999999987543 999999863
No 307
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.3e-13 Score=124.76 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=51.6
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc--ccccceeeccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWFEDQRV 209 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~--p~~G~i~~~g~~~ 209 (276)
.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... ++ |++|+|.++|..+
T Consensus 18 ~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---------~~~~~~sG~i~~~g~~~ 85 (265)
T PRK14252 18 EVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL---------YPGNHYEGEIILHPDNV 85 (265)
T ss_pred EEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC---------CCCCCcccEEEEcCccc
Confidence 3567777887667899999988 8999999999999999999999997510 01 2788888877543
No 308
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=1.7e-13 Score=123.84 Aligned_cols=63 Identities=25% Similarity=0.354 Sum_probs=52.0
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc-----ccceeecccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-----LGSKWFEDQR 208 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~-----~G~i~~~g~~ 208 (276)
+.++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|+ +|+|.++|++
T Consensus 8 l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~------------~~~g~i~~~G~i~~~g~~ 75 (261)
T PRK14258 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN------------ELESEVRVEGRVEFFNQN 75 (261)
T ss_pred EEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc------------CCCCCccccceEEECCEE
Confidence 34566777787667889999888 89999999999999999999999966 553 7888888765
Q ss_pred c
Q 023887 209 V 209 (276)
Q Consensus 209 ~ 209 (276)
+
T Consensus 76 i 76 (261)
T PRK14258 76 I 76 (261)
T ss_pred h
Confidence 4
No 309
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=1.4e-13 Score=125.38 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=86.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|..... ...|.+|+|.++|+++......
T Consensus 23 ~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~-------~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 23 VEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI-------PGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred EeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccc-------cCCCcCceEEECCEecccccch
Confidence 456677776666788999888 89999999999999999999999965100 0013689999888665210000
Q ss_pred cCCCCceeeeEEEEec----------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPL---------------------------------------------------------------- 231 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~---------------------------------------------------------------- 231 (276)
. ......++++++
T Consensus 96 ~---~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 172 (274)
T PRK14265 96 S---VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI 172 (274)
T ss_pred h---HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHH
Confidence 0 000000011000
Q ss_pred ------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 232 ------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 232 ------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||++
T Consensus 173 AraL~~~p~lllLDEPt~---~LD~~~~~~l~~~L~~~~~~~tiii~sH~~ 220 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCS---ALDPISTRQVEELCLELKEQYTIIMVTHNM 220 (274)
T ss_pred HHHHhhCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 001179999999 999999999999999997533 99999986
No 310
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.45 E-value=7e-14 Score=137.15 Aligned_cols=114 Identities=17% Similarity=0.199 Sum_probs=80.6
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-cccceeeccccccc-------------c
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGE-------------V 212 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-~~G~i~~~g~~~~~-------------v 212 (276)
..++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|+++|+++.. +
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~------------~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 341 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY------------PGKFEGNVFINGKPVDIRNPAQAIRAGIAMV 341 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC------------CCCCCeEEEECCEECCCCCHHHHHhCCCEEc
Confidence 4688888887 89999999999999999999999965 64 89999998865421 0
Q ss_pred cccc---CCCCcee-----------------------------eeEEEEecC----------------------------
Q 023887 213 STKS---GRGKHTT-----------------------------RHVSLLPLS---------------------------- 232 (276)
Q Consensus 213 s~~~---g~gk~tt-----------------------------~~~~~~~~~---------------------------- 232 (276)
.... +.-...| .....+.+.
T Consensus 342 ~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~ 421 (500)
T TIGR02633 342 PEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTN 421 (500)
T ss_pred CcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhC
Confidence 0000 0000000 000000000
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+++|||+. ++|....+.+.+.+.++.+.| +|++|||++
T Consensus 422 p~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 464 (500)
T TIGR02633 422 PRVLILDEPTR---GVDVGAKYEIYKLINQLAQEGVAIIVVSSELA 464 (500)
T ss_pred CCEEEEcCCCC---CcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 01179999999 999999999999999998776 999999963
No 311
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.8e-13 Score=127.97 Aligned_cols=129 Identities=17% Similarity=0.193 Sum_probs=89.8
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|..... -..|++|+|.++|.++..
T Consensus 81 i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~-------~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 81 FEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLI-------EGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred EEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc-------CCCCCceEEEECCEEccc
Confidence 345677777743 35789999988 89999999999999999999999965100 002679999999987642
Q ss_pred cccccCCCCceeeeEEEEecCC----------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSG---------------------------------------------------------- 233 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~---------------------------------------------------------- 233 (276)
..... ...++.++++++.+
T Consensus 154 ~~~~~---~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGq 230 (329)
T PRK14257 154 KKISS---LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQ 230 (329)
T ss_pred cccch---HhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHH
Confidence 10000 00011122221110
Q ss_pred --------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 234 --------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 234 --------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
..+|+|+|.. ++|......+.+.+.++.+.. +|++||+++
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts---~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~ 285 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTS---ALDPIATAKIEELILELKKKYSIIIVTHSMA 285 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 0179999999 999999999999999987644 999999863
No 312
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.45 E-value=2.8e-12 Score=125.35 Aligned_cols=106 Identities=29% Similarity=0.380 Sum_probs=76.7
Q ss_pred chhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCccc
Q 023887 72 PPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLG 149 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 149 (276)
..+.++|.+++|+|+..+... ...+.+++ +..++|+++|+||+|+...+... ..+..+++ .++.+|+.++.+
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~~~i~~~l---~~~~~piilV~NK~Dl~~~~~~~---~~~~~~g~~~~~~iSA~~g~g 186 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATDEAVARVL---RRSGKPVILAANKVDDERGEADA---AALWSLGLGEPHPVSALHGRG 186 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCCEEEEEECccCCccchhh---HHHHhcCCCCeEEEEcCCCCC
Confidence 467899999999999765322 22333333 45789999999999996432111 22334565 467899999998
Q ss_pred hHHHHhhc-----c----------CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 150 LDSLLQRL-----R----------DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 150 l~~l~~~l-----~----------g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++++...+ + ..+++++|.+|||||||+|.|++..
T Consensus 187 i~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~ 235 (472)
T PRK03003 187 VGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEE 235 (472)
T ss_pred cHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 88876543 1 1479999999999999999999854
No 313
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.45 E-value=1.4e-13 Score=136.02 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=88.1
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-----cccceeecc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g 206 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|.++|
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~------------~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL------------PSPPVVYPSGDIRFHG 75 (529)
T ss_pred EeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCcCCccceEEEECC
Confidence 3456677753 35789999988 89999999999999999999999976 44 799999988
Q ss_pred ccccccccccCCCCceeeeEEEEecC------------------------------------------------------
Q 023887 207 QRVGEVSTKSGRGKHTTRHVSLLPLS------------------------------------------------------ 232 (276)
Q Consensus 207 ~~~~~vs~~~g~gk~tt~~~~~~~~~------------------------------------------------------ 232 (276)
.++...+...- .+...+.+++++|.
T Consensus 76 ~~i~~~~~~~~-~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 154 (529)
T PRK15134 76 ESLLHASEQTL-RGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP 154 (529)
T ss_pred EecccCCHHHH-HHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC
Confidence 76533211000 00000011111111
Q ss_pred --------------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 233 --------------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 233 --------------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+..+++|||+. +||....+.+.+.+.++.++ + +|++||+++
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~llllDEPt~---~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 218 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTT---ALDVSVQAQILQLLRELQQELNMGLLFITHNLS 218 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCC---ccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH
Confidence 01179999999 99999999999999999764 5 899999963
No 314
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.44 E-value=2e-13 Score=133.72 Aligned_cols=111 Identities=23% Similarity=0.313 Sum_probs=93.2
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
..++++++.+ +|++++|||.||||||||.++|+|.. +|++|+|.++|.+ ..++ .+..+...+.+
T Consensus 305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~------------~P~~G~i~~~g~~-~~~~--~~~~~~~r~~~ 369 (539)
T COG1123 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL------------PPSSGSIIFDGQD-LDLT--GGELRRLRRRI 369 (539)
T ss_pred eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEEeCcc-cccc--cchhhhhhhhe
Confidence 3477888887 89999999999999999999999966 9999999999988 3333 23334466788
Q ss_pred EEEecCCCc-----------------------------------------------------------------------
Q 023887 227 SLLPLSGGG----------------------------------------------------------------------- 235 (276)
Q Consensus 227 ~~~~~~~~~----------------------------------------------------------------------- 235 (276)
++++|++..
T Consensus 370 QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~ 449 (539)
T COG1123 370 QMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPK 449 (539)
T ss_pred EEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCC
Confidence 999987532
Q ss_pred -EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||.. .||...+..+.+++.++.+. | .+++|||+.
T Consensus 450 lli~DEp~S---aLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~ 491 (539)
T COG1123 450 LLILDEPVS---ALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA 491 (539)
T ss_pred EEEecCCcc---ccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 69999999 99999999999999999975 6 899999973
No 315
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.44 E-value=4.1e-13 Score=118.58 Aligned_cols=103 Identities=24% Similarity=0.306 Sum_probs=73.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc-------ccccccCCCCc--eee--eE
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG-------EVSTKSGRGKH--TTR--HV 226 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~-------~vs~~~g~gk~--tt~--~~ 226 (276)
+|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++. -+...+....+ .|. .+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~------------~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l 72 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI------------PPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTV 72 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHH
Confidence 79999999999999999999999965 899999999997542 11111110000 000 00
Q ss_pred --------EEEecC---------------------------------------------CCcEEEecCCCCCCCCChhhH
Q 023887 227 --------SLLPLS---------------------------------------------GGGYLADTPGFNQPSLLKVTK 253 (276)
Q Consensus 227 --------~~~~~~---------------------------------------------~~~~iiDtPg~~~~~l~~~~~ 253 (276)
...... +..+++|||.. ++|..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~---~LD~~~~ 149 (223)
T TIGR03771 73 MSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFT---GLDMPTQ 149 (223)
T ss_pred HhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc---cCCHHHH
Confidence 000000 00079999999 9999999
Q ss_pred HHHHHHHHHHhhcc--eEEEeeeC
Q 023887 254 QSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 254 ~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+.+.+.+.++.+.+ +|++||++
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~~ 173 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHDL 173 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCH
Confidence 99999999998765 99999986
No 316
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=1.3e-13 Score=135.65 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=80.7
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc-ccccceeecccccccc-------------
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-PILGSKWFEDQRVGEV------------- 212 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~-p~~G~i~~~g~~~~~v------------- 212 (276)
..++++++.+ +|++++|+|+||+|||||+++|+|.. + |++|+|+++|+++...
T Consensus 276 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~------------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 343 (506)
T PRK13549 276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY------------PGRWEGEIFIDGKPVKIRNPQQAIAQGIAMV 343 (506)
T ss_pred ccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC------------CCCCCcEEEECCEECCCCCHHHHHHCCCEEe
Confidence 4688888887 89999999999999999999999965 6 5899999988654211
Q ss_pred cccc---CCCCcee--eeE---------------------------EEEecC----------------------------
Q 023887 213 STKS---GRGKHTT--RHV---------------------------SLLPLS---------------------------- 232 (276)
Q Consensus 213 s~~~---g~gk~tt--~~~---------------------------~~~~~~---------------------------- 232 (276)
.... +.-...| ..+ ..+.+.
T Consensus 344 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~ 423 (506)
T PRK13549 344 PEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLN 423 (506)
T ss_pred CcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhC
Confidence 1000 0000000 000 000000
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+|+|||+. ++|....+.+.+.+.++.+.| +|++|||++
T Consensus 424 p~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~ 466 (506)
T PRK13549 424 PKILILDEPTR---GIDVGAKYEIYKLINQLVQQGVAIIVISSELP 466 (506)
T ss_pred CCEEEEcCCCC---CcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 01179999999 999999999999999998776 999999963
No 317
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.43 E-value=1.9e-13 Score=133.78 Aligned_cols=126 Identities=20% Similarity=0.215 Sum_probs=99.0
Q ss_pred eeEEEecCCc----cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 138 EPLFCSVESK----LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 138 ~~~~~s~~~~----~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.+.++|... ..++++++.+ +|++++|+|.|||||||+.++|+|.... -....+|+|.++|+++..+
T Consensus 9 ~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~--------~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 9 ENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE--------GGRITSGEVILDGRDLLGL 80 (539)
T ss_pred eceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCC--------CCcccceEEEECCcchhcC
Confidence 4455555433 3689999998 9999999999999999999999998720 0123589999999988777
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... +.+-.-+.+++++|++-.
T Consensus 81 ~~~~-~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~ 159 (539)
T COG1123 81 SERE-MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGM 159 (539)
T ss_pred CHHH-HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence 6532 233344778888887421
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||+- .||...+.++.+++.++.++ | +|++|||+
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTT---aLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl 215 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTT---ALDVTTQAQILDLLKDLQRELGMAVLFITHDL 215 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCcc---ccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH
Confidence 69999999 99999999999999999964 5 99999997
No 318
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.43 E-value=1.6e-13 Score=134.28 Aligned_cols=122 Identities=21% Similarity=0.221 Sum_probs=83.5
Q ss_pred EEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-cccceeeccccccc------
Q 023887 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGE------ 211 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-~~G~i~~~g~~~~~------ 211 (276)
+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +| ++|+|+++|.++..
T Consensus 266 l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~------------~~~~~G~i~~~g~~~~~~~~~~~ 333 (490)
T PRK10938 266 GVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH------------PQGYSNDLTLFGRRRGSGETIWD 333 (490)
T ss_pred eEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CcccCCeEEEecccCCCCCCHHH
Confidence 455666556788898887 89999999999999999999999954 44 68888887754311
Q ss_pred -------cccccCCCC-c-ee-e------------------------------eEEEEe-c-C-----------------
Q 023887 212 -------VSTKSGRGK-H-TT-R------------------------------HVSLLP-L-S----------------- 232 (276)
Q Consensus 212 -------vs~~~g~gk-~-tt-~------------------------------~~~~~~-~-~----------------- 232 (276)
+........ . ++ . ...+-. . .
T Consensus 334 ~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 413 (490)
T PRK10938 334 IKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIV 413 (490)
T ss_pred HHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHH
Confidence 000000000 0 00 0 000000 0 0
Q ss_pred ------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc---eEEEeeeCC
Q 023887 233 ------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG---LLYMIHMLH 276 (276)
Q Consensus 233 ------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~---ii~~~H~~~ 276 (276)
+..+++|||+. ++|....+.+.+.+.++.+.+ +|++|||++
T Consensus 414 ~al~~~p~lllLDEPt~---gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~ 463 (490)
T PRK10938 414 RALVKHPTLLILDEPLQ---GLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE 463 (490)
T ss_pred HHHhcCCCEEEEcCccc---cCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh
Confidence 01179999999 999999999999999998753 899999974
No 319
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.43 E-value=2.9e-13 Score=133.49 Aligned_cols=59 Identities=27% Similarity=0.382 Sum_probs=49.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
++.+.++|.+...++++++.+ +|++++|+|+||||||||+++|+|.. -++|++|+|.++
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~----------~~~p~~G~i~~~ 62 (520)
T TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD----------QYEPTSGRIIYH 62 (520)
T ss_pred EEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc----------cCCCCceEEEEe
Confidence 345677787667899999988 89999999999999999999999953 126899999886
No 320
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.42 E-value=1.7e-13 Score=134.75 Aligned_cols=112 Identities=15% Similarity=0.232 Sum_probs=80.2
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc-------------ccc
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-------------VST 214 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~-------------vs~ 214 (276)
.++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.. +..
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~------------~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q 345 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD------------KRAGGEIRLNGKDISPRSPLDAVKKGMAYITE 345 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC------------cCCCCeEEECCEECCCCCHHHHHHCCcEEccC
Confidence 577888777 89999999999999999999999965 8999999998865421 111
Q ss_pred c---cCCCCcee--eeEEE-------------------------------EecC--------------------------
Q 023887 215 K---SGRGKHTT--RHVSL-------------------------------LPLS-------------------------- 232 (276)
Q Consensus 215 ~---~g~gk~tt--~~~~~-------------------------------~~~~-------------------------- 232 (276)
. .+.-...| ..+.+ +.+.
T Consensus 346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~ 425 (510)
T PRK09700 346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLC 425 (510)
T ss_pred ccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHh
Confidence 0 00000000 00000 0000
Q ss_pred --CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 --GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 --~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+|+|||+. ++|....+.+.+.+.++.+.| +|++|||+
T Consensus 426 ~~p~lLlLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~ 469 (510)
T PRK09700 426 CCPEVIIFDEPTR---GIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469 (510)
T ss_pred cCCCEEEECCCCC---CcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 00179999999 999999999999999998766 99999996
No 321
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.42 E-value=2.9e-13 Score=147.78 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=101.8
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.. +..++++++.+ +|++++|+|+||+|||||+++|.|. |+ .+|+|.++|.++..
T Consensus 1218 I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl------------~~-~~G~I~IdG~di~~ 1284 (1490)
T TIGR01271 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL------------LS-TEGEIQIDGVSWNS 1284 (1490)
T ss_pred EEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh------------cC-CCcEEEECCEEccc
Confidence 446778888864 56899999998 8999999999999999999999994 46 78999999999988
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
++... .++.+++++|++-.
T Consensus 1285 i~~~~-----lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271 1285 VTLQT-----WRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred CCHHH-----HHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence 77544 66788888887522
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+...+.+.+.+..+.. +|+++|.++
T Consensus 1360 QrL~LARALLr~~~ILlLDEaTS---~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ 1413 (1490)
T TIGR01271 1360 QLMCLARSILSKAKILLLDEPSA---HLDPVTLQIIRKTLKQSFSNCTVILSEHRVE 1413 (1490)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 69999999 999999999999988876544 999999763
No 322
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.42 E-value=3.9e-13 Score=132.90 Aligned_cols=111 Identities=22% Similarity=0.261 Sum_probs=80.5
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
..++++++.+ +|++++|+|+||+|||||+++|+|.. |++|+|+++|.++...+...- ......+
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-------------~~~G~i~~~g~~i~~~~~~~~--~~~~~~i 364 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-------------NSQGEIWFDGQPLHNLNRRQL--LPVRHRI 364 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-------------CCCcEEEECCEEccccchhhH--HHhhhce
Confidence 4688899888 89999999999999999999999954 478999998865532211000 0000111
Q ss_pred EEEecCC-------------------------------------------------------------------------
Q 023887 227 SLLPLSG------------------------------------------------------------------------- 233 (276)
Q Consensus 227 ~~~~~~~------------------------------------------------------------------------- 233 (276)
++++|..
T Consensus 365 ~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p 444 (529)
T PRK15134 365 QVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKP 444 (529)
T ss_pred EEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCC
Confidence 1111110
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
..+|+|||+. ++|....+.+.+.+.++.+. + +|++|||++
T Consensus 445 ~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~ 487 (529)
T PRK15134 445 SLIILDEPTS---SLDKTVQAQILALLKSLQQKHQLAYLFISHDLH 487 (529)
T ss_pred CEEEeeCCcc---ccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 0179999999 99999999999999999864 5 999999863
No 323
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.41 E-value=7.8e-13 Score=118.87 Aligned_cols=103 Identities=19% Similarity=0.212 Sum_probs=73.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceee--eE---------
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR--HV--------- 226 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~--~~--------- 226 (276)
+|++++|+|+||+|||||+++|+|.. +|++|+|.++|..++-+......-...|. .+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~------------~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 91 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL------------KPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYT 91 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC------------cCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccc
Confidence 68999999999999999999999965 89999999988655443322110000000 00
Q ss_pred ---------EEEec---------------------------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--
Q 023887 227 ---------SLLPL---------------------------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G-- 267 (276)
Q Consensus 227 ---------~~~~~---------------------------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~-- 267 (276)
..+.+ .+..+++|||.. ++|......+.+.+.++.+. +
T Consensus 92 ~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~---~LD~~~~~~l~~~l~~~~~~~~~t 168 (246)
T cd03237 92 HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSA---YLDVEQRLMASKVIRRFAENNEKT 168 (246)
T ss_pred cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCE
Confidence 00000 001189999999 99999999999999999763 4
Q ss_pred eEEEeeeC
Q 023887 268 LLYMIHML 275 (276)
Q Consensus 268 ii~~~H~~ 275 (276)
++++||++
T Consensus 169 iiivsHd~ 176 (246)
T cd03237 169 AFVVEHDI 176 (246)
T ss_pred EEEEeCCH
Confidence 99999986
No 324
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.41 E-value=2.9e-13 Score=149.65 Aligned_cols=119 Identities=14% Similarity=0.175 Sum_probs=94.4
Q ss_pred ceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|+. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++..-.
T Consensus 1940 v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll------------~ptsG~I~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1940 LNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT------------TVTSGDATVAGKSILTNI 2007 (2272)
T ss_pred EEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC------------CCCccEEEECCEECcchH
Confidence 4567778865 45899999988 89999999999999999999999976 899999999998764210
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
. ...+.+++++|....
T Consensus 2008 ~------~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2008 S------DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLST 2081 (2272)
T ss_pred H------HHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHH
Confidence 0 012234444443211
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|||.. ++|+..++.+.+.+.++.+.| +|++||+++
T Consensus 2082 A~ALi~~P~VLLLDEPTs---GLDp~sr~~l~~lL~~l~~~g~TIILtTH~me 2131 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTT---GMDPQARRMLWNTIVSIIREGRAVVLTSHSME 2131 (2272)
T ss_pred HHHHhcCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 79999999 999999999999999998766 999999863
No 325
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.41 E-value=3.5e-13 Score=120.92 Aligned_cols=111 Identities=27% Similarity=0.345 Sum_probs=77.3
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc------------cc
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS------------TK 215 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs------------~~ 215 (276)
.++++++.+ +|++++|+|+||+|||||+++|+|.. ++ +|+|.++|.++...+ ..
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~------------~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 77 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL------------PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQ 77 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CC-CeEEEECCEecCcCCHHHHhhheEEeccc
Confidence 467777777 89999999999999999999999954 43 788888876542210 00
Q ss_pred cCC--------------CCce----------------------eeeEEE--------------Eec-------CCCcEEE
Q 023887 216 SGR--------------GKHT----------------------TRHVSL--------------LPL-------SGGGYLA 238 (276)
Q Consensus 216 ~g~--------------gk~t----------------------t~~~~~--------------~~~-------~~~~~ii 238 (276)
+.. .... .+.... +.. .+..+++
T Consensus 78 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 78 QTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred CccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 000 0000 000000 001 2256789
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 158 DEPt~---~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~ 193 (248)
T PRK03695 158 DEPMN---SLDVAQQAALDRLLSELCQQGIAVVMSSHDL 193 (248)
T ss_pred cCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 99999 999999999999999998665 99999986
No 326
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.41 E-value=1.1e-13 Score=117.14 Aligned_cols=110 Identities=22% Similarity=0.295 Sum_probs=85.1
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceee
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~ 224 (276)
+...++++++.+ +|+.+++.||||+|||||+++++... .|++|++++.|++++...+.. .+.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li------------sp~~G~l~f~Ge~vs~~~pea-----~Rq 77 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI------------SPTSGTLLFEGEDVSTLKPEA-----YRQ 77 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc------------CCCCceEEEcCccccccChHH-----HHH
Confidence 345678888887 89999999999999999999999866 899999999999988754322 233
Q ss_pred eEEEEecCC------------------------------------------------------------------CcEEE
Q 023887 225 HVSLLPLSG------------------------------------------------------------------GGYLA 238 (276)
Q Consensus 225 ~~~~~~~~~------------------------------------------------------------------~~~ii 238 (276)
.++|+.|.+ ..+++
T Consensus 78 ~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLL 157 (223)
T COG4619 78 QVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLL 157 (223)
T ss_pred HHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEe
Confidence 333333322 11799
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHh-hcc--eEEEeeeC
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVC-AVG--LLYMIHML 275 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~-~~~--ii~~~H~~ 275 (276)
|||+. .||.-.++.+.+.+.... ++. ++-+|||-
T Consensus 158 DE~Ts---ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~ 194 (223)
T COG4619 158 DEITS---ALDESNKRNIEEMIHRYVREQNVAVLWITHDK 194 (223)
T ss_pred cCchh---hcChhhHHHHHHHHHHHhhhhceEEEEEecCh
Confidence 99999 999888898888766665 554 89999984
No 327
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.41 E-value=4e-13 Score=131.96 Aligned_cols=113 Identities=16% Similarity=0.208 Sum_probs=80.5
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc-------------cc
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV-------------ST 214 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v-------------s~ 214 (276)
.++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|+++... +.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~------------~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q 334 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL------------PRTSGYVTLDGHEVVTRSPQDGLANGIVYISE 334 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCCCCHHHHHHCCCEEecC
Confidence 467777777 89999999999999999999999965 89999999998654221 11
Q ss_pred cc---CCCCcee--eeE----------------------------EEEecC----------------------------C
Q 023887 215 KS---GRGKHTT--RHV----------------------------SLLPLS----------------------------G 233 (276)
Q Consensus 215 ~~---g~gk~tt--~~~----------------------------~~~~~~----------------------------~ 233 (276)
.+ ..-.+.| ..+ ..+.+. +
T Consensus 335 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p 414 (501)
T PRK10762 335 DRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRP 414 (501)
T ss_pred ccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 10 0000000 000 000010 0
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+|+|||+. ++|....+.+.+.+.++.++| +|++|||++
T Consensus 415 ~lllLDEPt~---~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~ 456 (501)
T PRK10762 415 KVLILDEPTR---GVDVGAKKEIYQLINQFKAEGLSIILVSSEMP 456 (501)
T ss_pred CEEEEcCCCC---CCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 1179999999 999999999999999998766 999999863
No 328
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=5.2e-13 Score=123.54 Aligned_cols=66 Identities=24% Similarity=0.305 Sum_probs=52.4
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
++.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.... ..+.|++|+|.++|.++
T Consensus 48 i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~-------~~~~p~~G~I~i~g~~i 114 (305)
T PRK14264 48 VEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDR-------IKAARIDGSVELDGQDI 114 (305)
T ss_pred EEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-------cCCCCCceEEEECCEEc
Confidence 456777777767889999888 8999999999999999999999996510 00026899999988654
No 329
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=5.7e-13 Score=134.71 Aligned_cols=119 Identities=20% Similarity=0.241 Sum_probs=82.6
Q ss_pred EEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc-cccccccccc-
Q 023887 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVSTKS- 216 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-~~~~~vs~~~- 216 (276)
+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|++++ ..++-++...
T Consensus 318 l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~------------~p~~G~i~~~~~~~igy~~Q~~~ 385 (638)
T PRK10636 318 VSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL------------APVSGEIGLAKGIKLGYFAQHQL 385 (638)
T ss_pred eEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEEECCCEEEEEecCcch
Confidence 455666556788888887 89999999999999999999999966 89999998753 2333222110
Q ss_pred -CCCCcee------------------eeEEEEec----------------------------CCCcEEEecCCCCCCCCC
Q 023887 217 -GRGKHTT------------------RHVSLLPL----------------------------SGGGYLADTPGFNQPSLL 249 (276)
Q Consensus 217 -g~gk~tt------------------~~~~~~~~----------------------------~~~~~iiDtPg~~~~~l~ 249 (276)
......+ .....+.+ .+..+|+|+|+. +||
T Consensus 386 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~---~LD 462 (638)
T PRK10636 386 EFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTN---HLD 462 (638)
T ss_pred hhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC---CCC
Confidence 0000000 00000000 011189999999 999
Q ss_pred hhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 250 KVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 250 ~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
..+.+.+.+.+.++ .+ +|++|||+
T Consensus 463 ~~~~~~l~~~L~~~--~gtvi~vSHd~ 487 (638)
T PRK10636 463 LDMRQALTEALIDF--EGALVVVSHDR 487 (638)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEeCCH
Confidence 99999999999988 35 99999986
No 330
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.40 E-value=2.6e-13 Score=132.94 Aligned_cols=114 Identities=11% Similarity=0.144 Sum_probs=81.5
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc------------
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST------------ 214 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~------------ 214 (276)
..++++++.+ +|++++|+|+||+|||||+++|.|.. +|++|+|+++|.++...+.
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~ 329 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR------------EKSAGTITLHGKKINNHNANEAINHGFALVT 329 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC------------cCCccEEEECCEECCCCCHHHHHHCCCEEcC
Confidence 3577777777 89999999999999999999999976 8999999999866532110
Q ss_pred -cc---CCCCcee------ee-E-----------------------EEEec----------------------------C
Q 023887 215 -KS---GRGKHTT------RH-V-----------------------SLLPL----------------------------S 232 (276)
Q Consensus 215 -~~---g~gk~tt------~~-~-----------------------~~~~~----------------------------~ 232 (276)
.. +.-...+ .. + ..+.+ +
T Consensus 330 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 409 (491)
T PRK10982 330 EERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQ 409 (491)
T ss_pred CchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcC
Confidence 00 0000000 00 0 00000 0
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+|+|||+. ++|....+.+.+.+.++.+++ +|++|||++
T Consensus 410 p~illLDEPt~---gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~ 452 (491)
T PRK10982 410 PEILMLDEPTR---GIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452 (491)
T ss_pred CCEEEEcCCCc---ccChhHHHHHHHHHHHHHHCCCEEEEECCChH
Confidence 11289999999 999999999999999998776 999999963
No 331
>PLN03211 ABC transporter G-25; Provisional
Probab=99.40 E-value=4.9e-13 Score=135.56 Aligned_cols=121 Identities=21% Similarity=0.258 Sum_probs=84.4
Q ss_pred EEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc--cccceeeccccccc------
Q 023887 141 FCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQRVGE------ 211 (276)
Q Consensus 141 ~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~~~~------ 211 (276)
..+|.+...+++++..+ +|++++|+|+||+|||||+|+|+|.. +| .+|+|.++|+++..
T Consensus 75 ~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~------------~~~~~sG~I~inG~~~~~~~~~~i 142 (659)
T PLN03211 75 TRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRI------------QGNNFTGTILANNRKPTKQILKRT 142 (659)
T ss_pred cccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC------------CCCceeEEEEECCEECchhhccce
Confidence 34555566788888887 89999999999999999999999965 55 38999998875421
Q ss_pred --cccccCCC------------------Ccee------------eeEEEEe-------------cC--------------
Q 023887 212 --VSTKSGRG------------------KHTT------------RHVSLLP-------------LS-------------- 232 (276)
Q Consensus 212 --vs~~~g~g------------------k~tt------------~~~~~~~-------------~~-------------- 232 (276)
+...+..- +..+ ...++-. ++
T Consensus 143 ~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~ 222 (659)
T PLN03211 143 GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 222 (659)
T ss_pred EEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHH
Confidence 00000000 0000 0000000 00
Q ss_pred --CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 --GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 --~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+++|||.. ++|..+...+.+.+.++.+.| +|+++|+++
T Consensus 223 ~~P~iLlLDEPts---gLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~ 267 (659)
T PLN03211 223 INPSLLILDEPTS---GLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267 (659)
T ss_pred hCCCEEEEeCCCC---CcCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Confidence 11279999999 999999999999999998766 999999863
No 332
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.40 E-value=2.6e-13 Score=133.27 Aligned_cols=113 Identities=17% Similarity=0.236 Sum_probs=80.4
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc-------------cc
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV-------------ST 214 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v-------------s~ 214 (276)
.++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|+++... ..
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~------------~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 335 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT------------RRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPE 335 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC------------cCCCceEEECCEECCCCCHHHHHhCCCEEcCc
Confidence 567777777 89999999999999999999999966 89999999988654210 00
Q ss_pred cc---CCCC-cee-eeEE----------------------------EEecC----------------------------C
Q 023887 215 KS---GRGK-HTT-RHVS----------------------------LLPLS----------------------------G 233 (276)
Q Consensus 215 ~~---g~gk-~tt-~~~~----------------------------~~~~~----------------------------~ 233 (276)
.. +.-. .+. ..+. .+.+. +
T Consensus 336 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p 415 (501)
T PRK11288 336 DRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDM 415 (501)
T ss_pred CHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCC
Confidence 00 0000 000 0000 00000 0
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+|+|||+. ++|....+.+.+.+.++.++| +|++|||++
T Consensus 416 ~lllLDEPt~---~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 457 (501)
T PRK11288 416 KVILLDEPTR---GIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP 457 (501)
T ss_pred CEEEEcCCCC---CCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 1179999999 999999999999999998876 999999963
No 333
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.40 E-value=1.6e-13 Score=123.64 Aligned_cols=114 Identities=25% Similarity=0.311 Sum_probs=85.0
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc-----------
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK----------- 215 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~----------- 215 (276)
..++++++.+ +|+++++||.||+|||||-++|+|.. +|++|+|+++|+++..++..
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~------------~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~ 94 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE------------EPTSGEILFEGKDITKLSKEERRERVLELLE 94 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc------------CCCCceEEEcCcchhhcchhHHHHHHHHHHH
Confidence 4678888888 89999999999999999999999965 99999999999876443311
Q ss_pred -cCCCC-ceeeeEE--------------EEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 216 -SGRGK-HTTRHVS--------------LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 216 -~g~gk-~tt~~~~--------------~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
.|..+ +..+..- .+.+.+..+++|+|.. .+|--.+.++..++.++.+. | .+++|||+.
T Consensus 95 ~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvS---aLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~ 171 (268)
T COG4608 95 KVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVS---ALDVSVQAQILNLLKDLQEELGLTYLFISHDLS 171 (268)
T ss_pred HhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchh---hcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence 11100 0111100 1112234489999999 88877788999999999975 5 899999974
No 334
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.39 E-value=6.1e-13 Score=134.69 Aligned_cols=123 Identities=21% Similarity=0.229 Sum_probs=91.6
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|++.++|+++..
T Consensus 7 ~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~------------~~~~G~i~~~g~~i~~ 74 (648)
T PRK10535 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD------------KPTSGTYRVAGQDVAT 74 (648)
T ss_pred EeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEcCc
Confidence 4566777753 24788888887 89999999999999999999999965 8999999999987654
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.....- .....+.+++++++...
T Consensus 75 ~~~~~~-~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv 153 (648)
T PRK10535 75 LDADAL-AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRV 153 (648)
T ss_pred CCHHHH-HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHH
Confidence 321100 00001223333322110
Q ss_pred ------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++++.+ ++++||++
T Consensus 154 ~LAraL~~~P~lLllDEP~~---gLD~~s~~~l~~ll~~l~~~g~tilivsH~~ 204 (648)
T PRK10535 154 SIARALMNGGQVILADEPTG---ALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204 (648)
T ss_pred HHHHHHhcCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 79999999 999999999999999998765 99999986
No 335
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=7.7e-13 Score=130.83 Aligned_cols=121 Identities=19% Similarity=0.226 Sum_probs=83.0
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-ccccccccc
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVSTKS 216 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~vs~~~ 216 (276)
.+.++|.....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.+++. .++-++...
T Consensus 324 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~------------~p~~G~i~~~~~~~i~~~~q~~ 391 (530)
T PRK15064 324 NLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL------------EPDSGTVKWSENANIGYYAQDH 391 (530)
T ss_pred eeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCceEEEEEcccc
Confidence 3556676666788888888 89999999999999999999999965 899999988763 222222111
Q ss_pred C--CCCcee--ee-----------------EEEEec----------------------------CCCcEEEecCCCCCCC
Q 023887 217 G--RGKHTT--RH-----------------VSLLPL----------------------------SGGGYLADTPGFNQPS 247 (276)
Q Consensus 217 g--~gk~tt--~~-----------------~~~~~~----------------------------~~~~~iiDtPg~~~~~ 247 (276)
. .-.+.| .. ...+-+ .+..+|+|||.. +
T Consensus 392 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~---~ 468 (530)
T PRK15064 392 AYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTN---H 468 (530)
T ss_pred cccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCC---C
Confidence 0 000000 00 000000 001189999999 9
Q ss_pred CChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 248 LLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 248 l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
+|....+.+.+.+.++. ..+|++|||+
T Consensus 469 LD~~~~~~l~~~l~~~~-~tvi~vsHd~ 495 (530)
T PRK15064 469 MDMESIESLNMALEKYE-GTLIFVSHDR 495 (530)
T ss_pred CCHHHHHHHHHHHHHCC-CEEEEEeCCH
Confidence 99999999999988872 2399999986
No 336
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.39 E-value=2.6e-13 Score=122.25 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=81.6
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc-----cccccC--CC
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-----VSTKSG--RG 219 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~-----vs~~~g--~g 219 (276)
..++++++.+ +|++++++|+||+||||+|++|.|.. .|++|++.++|..-.. +. +.+ +|
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll------------~p~~G~v~V~G~~Pf~~~~~~~~-~~~~v~g 104 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL------------LPTSGKVRVNGKDPFRRREEYLR-SIGLVMG 104 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc------------ccCCCeEEecCcCcchhHHHHHH-HHHHHhh
Confidence 3678888888 89999999999999999999999977 8999999998865332 00 000 00
Q ss_pred Cceeee-------------------------------------------EEEEe--------------cCCCcEEEecCC
Q 023887 220 KHTTRH-------------------------------------------VSLLP--------------LSGGGYLADTPG 242 (276)
Q Consensus 220 k~tt~~-------------------------------------------~~~~~--------------~~~~~~iiDtPg 242 (276)
..+... +.-++ -.+..+++|||+
T Consensus 105 qk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpT 184 (325)
T COG4586 105 QKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPT 184 (325)
T ss_pred hhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCc
Confidence 000000 00000 011227999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 243 FNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 243 ~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+ +||-..+..+++.+++..+. + |+++||+++
T Consensus 185 v---gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~ 218 (325)
T COG4586 185 V---GLDVNAQANIREFLKEYNEERQATVLLTTHIFD 218 (325)
T ss_pred c---CcchhHHHHHHHHHHHHHHhhCceEEEEecchh
Confidence 9 99998999999999999874 4 999999974
No 337
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.39 E-value=2.4e-13 Score=130.60 Aligned_cols=121 Identities=22% Similarity=0.338 Sum_probs=100.5
Q ss_pred cCceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.|+.++++|.. .+.++++++.+ +|+++++||+||+||||+|++|.+ +|+.++|.|.+||+++..+
T Consensus 538 i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR------------ffdv~sGsI~iDgqdIrnv 605 (790)
T KOG0056|consen 538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR------------FFDVNSGSITIDGQDIRNV 605 (790)
T ss_pred EEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH------------HhhccCceEEEcCchHHHH
Confidence 346778888864 56799999987 999999999999999999999998 8899999999999999887
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
...+ .+.+++.+||+.-.
T Consensus 606 t~~S-----LRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEK 680 (790)
T KOG0056|consen 606 TQSS-----LRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEK 680 (790)
T ss_pred HHHH-----HHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcch
Confidence 6443 66777888776311
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++||.+. .+|--+.+.+.+.+..+++.- .|+++|.+
T Consensus 681 QRVAiARtiLK~P~iIlLDEATS---ALDT~tER~IQaaL~rlca~RTtIVvAHRL 733 (790)
T KOG0056|consen 681 QRVAIARTILKAPSIILLDEATS---ALDTNTERAIQAALARLCANRTTIVVAHRL 733 (790)
T ss_pred hhHHHHHHHhcCCcEEEEcchhh---hcCCccHHHHHHHHHHHhcCCceEEEeeee
Confidence 58899988 888878889999999998754 78888875
No 338
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.39 E-value=2.5e-13 Score=116.09 Aligned_cols=124 Identities=18% Similarity=0.214 Sum_probs=98.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
.+.+...|+..+.++.++... +|..+.|+|.||+||||+++++.-.. .|+.|.|+++|..+.-...+
T Consensus 9 v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE------------~P~~G~I~v~geei~~k~~~ 76 (256)
T COG4598 9 VEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE------------KPSAGSIRVNGEEIRLKRDK 76 (256)
T ss_pred hhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc------------CCCCceEEECCeEEEeeeCC
Confidence 344556777777888888765 89999999999999999999998765 89999999999887664443
Q ss_pred cCCCC--------ceeeeEEEEecCCCc----------------------------------------------------
Q 023887 216 SGRGK--------HTTRHVSLLPLSGGG---------------------------------------------------- 235 (276)
Q Consensus 216 ~g~gk--------~tt~~~~~~~~~~~~---------------------------------------------------- 235 (276)
.|.-+ ..++..+|++|.+++
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGG 156 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGG 156 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCch
Confidence 33211 122345566665544
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|+|+. .+|+.-..++.+.+.++.++| ++++||.|
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTS---ALDPElVgEVLkv~~~LAeEgrTMv~VTHEM 212 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTS---ALDPELVGEVLKVMQDLAEEGRTMVVVTHEM 212 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcc---cCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 69999999 999998999999999999998 89999987
No 339
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.39 E-value=3.7e-13 Score=132.57 Aligned_cols=113 Identities=13% Similarity=0.200 Sum_probs=79.7
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc-------------ccc
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE-------------VST 214 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~-------------vs~ 214 (276)
.++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.++.. +..
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~------------~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q 345 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR------------PARGGRIMLNGKEINALSTAQRLARGLVYLPE 345 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC------------CCCCcEEEECCEECCCCCHHHHHhCCcEECCC
Confidence 467777776 89999999999999999999999966 8999999998865422 111
Q ss_pred cc---CCCCceee--e-------------------------EEEEecC----------------------------CCcE
Q 023887 215 KS---GRGKHTTR--H-------------------------VSLLPLS----------------------------GGGY 236 (276)
Q Consensus 215 ~~---g~gk~tt~--~-------------------------~~~~~~~----------------------------~~~~ 236 (276)
.. +.-...+. . ...+-+. +..+
T Consensus 346 ~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lL 425 (510)
T PRK15439 346 DRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLL 425 (510)
T ss_pred ChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEE
Confidence 00 00000000 0 0000000 0117
Q ss_pred EEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 237 LADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 237 iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
|+|||+. ++|....+.+.+.+.++.+++ +|++|||++
T Consensus 426 lLDEPt~---gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~ 464 (510)
T PRK15439 426 IVDEPTR---GVDVSARNDIYQLIRSIAAQNVAVLFISSDLE 464 (510)
T ss_pred EECCCCc---CcChhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 9999999 999999999999999998766 999999963
No 340
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.39 E-value=1.3e-11 Score=126.18 Aligned_cols=106 Identities=26% Similarity=0.337 Sum_probs=77.2
Q ss_pred chhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCccc
Q 023887 72 PPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLG 149 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 149 (276)
..+.++|.+++|+|+..+... ...+.++| +..++|+++|+||+|+...... ...+..+++ .++.+|+.++.+
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~L---r~~~~pvIlV~NK~D~~~~~~~---~~~~~~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDERIVRML---RRAGKPVVLAVNKIDDQASEYD---AAEFWKLGLGEPYPISAMHGRG 423 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HhcCCCEEEEEECcccccchhh---HHHHHHcCCCCeEEEECCCCCC
Confidence 357899999999999753222 22344444 5679999999999998654221 123344565 467899999999
Q ss_pred hHHHHhhc-----c------------CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 150 LDSLLQRL-----R------------DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 150 l~~l~~~l-----~------------g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|...+ + -.+++++|.+|||||||+|.|.+..
T Consensus 424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~ 474 (712)
T PRK09518 424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEE 474 (712)
T ss_pred chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 88876543 1 1479999999999999999999854
No 341
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.38 E-value=6e-13 Score=131.24 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=46.5
Q ss_pred eeEEEecCC-----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 138 EPLFCSVES-----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 138 ~~~~~s~~~-----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
+.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++
T Consensus 283 ~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~ 344 (520)
T TIGR03269 283 RNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL------------EPTSGEVNVR 344 (520)
T ss_pred eccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEEe
Confidence 345666632 34688888887 89999999999999999999999966 8899999885
No 342
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.38 E-value=4.1e-13 Score=119.38 Aligned_cols=121 Identities=22% Similarity=0.307 Sum_probs=93.0
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.+.++++..+++|+-.+ +|+..+|+|+||+|||||++++.+.. .|++|.+.+.|.+.+...-
T Consensus 33 ~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~------------~pssg~~~~~G~~~G~~~~ 100 (257)
T COG1119 33 ELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH------------PPSSGDVTLLGRRFGKGET 100 (257)
T ss_pred EecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc------------CCCCCceeeeeeeccCCcc
Confidence 4567889999999999999887 89999999999999999999999976 8899999888876654321
Q ss_pred ccCCCCceeeeEEE-----------------------------EecC---------------------------------
Q 023887 215 KSGRGKHTTRHVSL-----------------------------LPLS--------------------------------- 232 (276)
Q Consensus 215 ~~g~gk~tt~~~~~-----------------------------~~~~--------------------------------- 232 (276)
... .++.+++ +...
T Consensus 101 ~~e----lrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge 176 (257)
T COG1119 101 IFE----LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGE 176 (257)
T ss_pred hHH----HHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhH
Confidence 000 1111111 1100
Q ss_pred -------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc--c--eEEEeeeC
Q 023887 233 -------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV--G--LLYMIHML 275 (276)
Q Consensus 233 -------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~--~--ii~~~H~~ 275 (276)
+..+|+|||.- ++|....+.+.+.|.++... + ++++||..
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~---GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~ 233 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQ---GLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccc---cCChHHHHHHHHHHHHHhcCCCCceEEEEEcch
Confidence 00079999999 99999999999999999975 3 99999974
No 343
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.38 E-value=4.5e-13 Score=135.06 Aligned_cols=125 Identities=21% Similarity=0.186 Sum_probs=88.5
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|..+..
T Consensus 15 v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll------------~p~~G~i~~~g~~~~~ 82 (623)
T PRK10261 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL------------EQAGGLVQCDKMLLRR 82 (623)
T ss_pred EeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC------------CCCCeEEEECCEEecc
Confidence 4556677752 24788999988 89999999999999999999999965 8899999887753210
Q ss_pred -------cccccCCC--CceeeeEEEEecCC-------------------------------------------------
Q 023887 212 -------VSTKSGRG--KHTTRHVSLLPLSG------------------------------------------------- 233 (276)
Q Consensus 212 -------vs~~~g~g--k~tt~~~~~~~~~~------------------------------------------------- 233 (276)
+....... +.....+++++|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 162 (623)
T PRK10261 83 RSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTIL 162 (623)
T ss_pred ccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHH
Confidence 00000000 00001233333321
Q ss_pred -------------------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 234 -------------------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 234 -------------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
..+|+|||+. +||....+++.+++.++.+. | +|++|||++
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~---~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~ 230 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTT---ALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG 230 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCC---ccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 0079999999 99999999999999999854 5 999999963
No 344
>PRK13409 putative ATPase RIL; Provisional
Probab=99.38 E-value=5e-13 Score=133.94 Aligned_cols=120 Identities=23% Similarity=0.270 Sum_probs=83.9
Q ss_pred EEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccccee-----------ecc
Q 023887 140 LFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-----------FED 206 (276)
Q Consensus 140 ~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~-----------~~g 206 (276)
+..+|+.. ..+.++. .+ +|++++|+|+||+|||||+++|+|.. +|++|+|. ++|
T Consensus 79 ~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l------------~p~~G~i~~~~~~~~~~~~~~G 145 (590)
T PRK13409 79 PVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGEL------------IPNLGDYEEEPSWDEVLKRFRG 145 (590)
T ss_pred ceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCc------------cCCCccccCCCcHHHHHHHhCC
Confidence 44556543 4677777 45 89999999999999999999999966 89999997 888
Q ss_pred ccccccccccCCC-CceeeeEEEEec------------------------------------------------------
Q 023887 207 QRVGEVSTKSGRG-KHTTRHVSLLPL------------------------------------------------------ 231 (276)
Q Consensus 207 ~~~~~vs~~~g~g-k~tt~~~~~~~~------------------------------------------------------ 231 (276)
.++.........+ .......+++.+
T Consensus 146 ~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~ 225 (590)
T PRK13409 146 TELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAA 225 (590)
T ss_pred hHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 7654321100000 000000111110
Q ss_pred ----CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 232 ----SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 232 ----~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+..+++|||.. +||......+.+.+.++.+ + +|++||+++
T Consensus 226 al~~~p~lllLDEPts---~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~ 272 (590)
T PRK13409 226 ALLRDADFYFFDEPTS---YLDIRQRLNVARLIRELAE-GKYVLVVEHDLA 272 (590)
T ss_pred HHhcCCCEEEEECCCC---CCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 011189999999 9999999999999999987 6 999999863
No 345
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.38 E-value=1.1e-12 Score=119.06 Aligned_cols=111 Identities=19% Similarity=0.191 Sum_probs=77.3
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCcee----
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT---- 223 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt---- 223 (276)
.++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|... ......+.....|
T Consensus 39 il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~------------~p~~G~I~~~g~~~-~~~~~~~~~~~~tv~en 105 (264)
T PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL------------SPTVGKVDRNGEVS-VIAISAGLSGQLTGIEN 105 (264)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------CCCceEEEECCEEe-EEecccCCCCCCcHHHH
Confidence 567777777 89999999999999999999999965 89999998887421 0000000000000
Q ss_pred ---------------------------------eeEEEEe--------------cCCCcEEEecCCCCCCCCChhhHHHH
Q 023887 224 ---------------------------------RHVSLLP--------------LSGGGYLADTPGFNQPSLLKVTKQSL 256 (276)
Q Consensus 224 ---------------------------------~~~~~~~--------------~~~~~~iiDtPg~~~~~l~~~~~~~l 256 (276)
+....++ .++..+++|+|.. ++|....+.+
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~---gLD~~~~~~l 182 (264)
T PRK13546 106 IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALS---VGDQTFAQKC 182 (264)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccc---cCCHHHHHHH
Confidence 0000000 0011289999999 9999899999
Q ss_pred HHHHHHHhhcc--eEEEeeeC
Q 023887 257 AQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 257 ~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+.+.++.+.+ +|++||++
T Consensus 183 ~~~L~~~~~~g~tiIiisH~~ 203 (264)
T PRK13546 183 LDKIYEFKEQNKTIFFVSHNL 203 (264)
T ss_pred HHHHHHHHHCCCEEEEEcCCH
Confidence 99999997665 89999985
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.37 E-value=1.1e-12 Score=132.52 Aligned_cols=120 Identities=16% Similarity=0.223 Sum_probs=81.7
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-ccccccccc
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVSTKS 216 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~vs~~~ 216 (276)
.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++.. .++-+....
T Consensus 324 ~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~------------~p~~G~i~~~~~~~i~y~~q~~ 391 (635)
T PRK11147 324 NVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL------------QADSGRIHCGTKLEVAYFDQHR 391 (635)
T ss_pred eeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEECCCcEEEEEeCcc
Confidence 3556676666788888887 89999999999999999999999965 899999987421 222222110
Q ss_pred -CCCCcee--ee--------------------EEEEec----------------------------CCCcEEEecCCCCC
Q 023887 217 -GRGKHTT--RH--------------------VSLLPL----------------------------SGGGYLADTPGFNQ 245 (276)
Q Consensus 217 -g~gk~tt--~~--------------------~~~~~~----------------------------~~~~~iiDtPg~~~ 245 (276)
..-.+.| .. ...+.+ .+..+|+|+|+.
T Consensus 392 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~-- 469 (635)
T PRK11147 392 AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTN-- 469 (635)
T ss_pred cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC--
Confidence 0000000 00 000000 001189999999
Q ss_pred CCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 246 PSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 246 ~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
++|..+.+.+.+.+.++ .+ +|++|||+
T Consensus 470 -~LD~~~~~~l~~~l~~~--~~tvi~vSHd~ 497 (635)
T PRK11147 470 -DLDVETLELLEELLDSY--QGTVLLVSHDR 497 (635)
T ss_pred -CCCHHHHHHHHHHHHhC--CCeEEEEECCH
Confidence 99999998888888876 24 99999986
No 347
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.37 E-value=1.9e-13 Score=134.17 Aligned_cols=123 Identities=18% Similarity=0.221 Sum_probs=86.0
Q ss_pred ceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 137 YEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.+.+++++... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|+++|.... +
T Consensus 24 lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl------------~P~sGeI~I~G~~~~-i 90 (549)
T PRK13545 24 LKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT------------MPNKGTVDIKGSAAL-I 90 (549)
T ss_pred EEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC------------CCCceEEEECCEeee-E
Confidence 34556666553 4688888887 89999999999999999999999966 899999999885421 0
Q ss_pred ccccCCCCcee-------------------------------------eeEEEEe--------------cCCCcEEEecC
Q 023887 213 STKSGRGKHTT-------------------------------------RHVSLLP--------------LSGGGYLADTP 241 (276)
Q Consensus 213 s~~~g~gk~tt-------------------------------------~~~~~~~--------------~~~~~~iiDtP 241 (276)
....+.....| +.+..++ ..+..+|+|||
T Consensus 91 ~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEP 170 (549)
T PRK13545 91 AISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEA 170 (549)
T ss_pred EeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 00000000000 0000000 00112899999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 242 GFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 242 g~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 171 Ts---gLD~~sr~~LlelL~el~~~G~TIIIVSHdl 203 (549)
T PRK13545 171 LS---VGDQTFTKKCLDKMNEFKEQGKTIFFISHSL 203 (549)
T ss_pred cc---cCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 99 999999999999999997765 99999986
No 348
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.37 E-value=7.9e-13 Score=146.22 Aligned_cols=118 Identities=16% Similarity=0.244 Sum_probs=92.8
Q ss_pred ceeEEEecC--CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.+.|. +...++++++.+ +|++++|+|+||+|||||+|+|+|.. +|++|+|+++|.++..-.
T Consensus 931 I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl------------~PtsG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 931 VKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL------------PPTSGTVLVGGKDIETNL 998 (2272)
T ss_pred EEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC------------CCCceEEEECCEECcchH
Confidence 455677774 356789999888 89999999999999999999999966 899999999998764211
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
. ..++.+++++|....
T Consensus 999 ~------~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsL 1072 (2272)
T TIGR01257 999 D------AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSV 1072 (2272)
T ss_pred H------HHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 0 012345555543211
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|||.. ++|....+.+.+.+.++++ | +|++||+++
T Consensus 1073 ArALi~~PkVLLLDEPTS---GLDp~sr~~l~~lL~~l~~-g~TIIltTHdmd 1121 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTS---GVDPYSRRSIWDLLLKYRS-GRTIIMSTHHMD 1121 (2272)
T ss_pred HHHHHcCCCEEEEECCCc---CCCHHHHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence 79999999 9999999999999999964 5 999999873
No 349
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.37 E-value=1.4e-12 Score=129.71 Aligned_cols=121 Identities=22% Similarity=0.277 Sum_probs=82.9
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-ccccccccc
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVSTKS 216 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~vs~~~ 216 (276)
.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|++++. .++-++...
T Consensus 327 ~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~------------~p~~G~i~~~~~~~i~~v~q~~ 394 (552)
T TIGR03719 327 NLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE------------QPDSGTIKIGETVKLAYVDQSR 394 (552)
T ss_pred eEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCeEEEECCceEEEEEeCCc
Confidence 3455666666888898887 89999999999999999999999966 889999887542 122221110
Q ss_pred C-CCCcee----------------------eeEEEEecC----------------------------CCcEEEecCCCCC
Q 023887 217 G-RGKHTT----------------------RHVSLLPLS----------------------------GGGYLADTPGFNQ 245 (276)
Q Consensus 217 g-~gk~tt----------------------~~~~~~~~~----------------------------~~~~iiDtPg~~~ 245 (276)
. .-...| .....+.+. +..+|+|||+.
T Consensus 395 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~-- 472 (552)
T TIGR03719 395 DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTN-- 472 (552)
T ss_pred cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--
Confidence 0 000000 000000010 01189999999
Q ss_pred CCCChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 246 PSLLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 246 ~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
++|....+.+.+.+.++.. .+|++|||+
T Consensus 473 -~LD~~~~~~l~~~l~~~~~-~viivsHd~ 500 (552)
T TIGR03719 473 -DLDVETLRALEEALLEFAG-CAVVISHDR 500 (552)
T ss_pred -CCCHHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence 9999999999999998842 399999986
No 350
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.36 E-value=1.4e-12 Score=129.79 Aligned_cols=121 Identities=23% Similarity=0.271 Sum_probs=83.1
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-ccccccccc
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVSTKS 216 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~vs~~~ 216 (276)
.+.++|.+...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|++++. .++-++...
T Consensus 329 ~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~------------~p~~G~i~~~~~~~i~~v~q~~ 396 (556)
T PRK11819 329 NLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE------------QPDSGTIKIGETVKLAYVDQSR 396 (556)
T ss_pred eEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEECCceEEEEEeCch
Confidence 3455666666789999888 89999999999999999999999966 899999988542 222222110
Q ss_pred -CCCCcee-------------------------eeEEEEe---------c----------------CCCcEEEecCCCCC
Q 023887 217 -GRGKHTT-------------------------RHVSLLP---------L----------------SGGGYLADTPGFNQ 245 (276)
Q Consensus 217 -g~gk~tt-------------------------~~~~~~~---------~----------------~~~~~iiDtPg~~~ 245 (276)
..-...| ....+-. + .+..+|+|||..
T Consensus 397 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~-- 474 (556)
T PRK11819 397 DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTN-- 474 (556)
T ss_pred hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC--
Confidence 0000000 0000000 0 011189999999
Q ss_pred CCCChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 246 PSLLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 246 ~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
++|....+.+.+.+.++.. .+|++|||+
T Consensus 475 -~LD~~~~~~l~~~l~~~~~-tvi~vtHd~ 502 (556)
T PRK11819 475 -DLDVETLRALEEALLEFPG-CAVVISHDR 502 (556)
T ss_pred -CCCHHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 9999999999999998742 399999986
No 351
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=9.4e-13 Score=119.12 Aligned_cols=104 Identities=24% Similarity=0.263 Sum_probs=85.7
Q ss_pred hccC-CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCC
Q 023887 156 RLRD-QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGG 234 (276)
Q Consensus 156 ~l~g-~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~ 234 (276)
.+++ .++++.|+||+|||||||++.|.. .|++|.|.++|.-+...+.....-. ..+.++|++|+-+
T Consensus 20 ~~p~~GvTAlFG~SGsGKTslin~IaGL~------------rPdeG~I~lngr~L~Ds~k~i~lp~-~~RriGYVFQDAR 86 (352)
T COG4148 20 TLPARGITALFGPSGSGKTSLINMIAGLT------------RPDEGRIELNGRVLVDAEKGIFLPP-EKRRIGYVFQDAR 86 (352)
T ss_pred cCCCCceEEEecCCCCChhhHHHHHhccC------------CccccEEEECCEEeecccCCcccCh-hhheeeeEeeccc
Confidence 3466 789999999999999999999977 8999999999987766543322222 3467899998743
Q ss_pred c--------------------------------------------------------------EEEecCCCCCCCCChhh
Q 023887 235 G--------------------------------------------------------------YLADTPGFNQPSLLKVT 252 (276)
Q Consensus 235 ~--------------------------------------------------------------~iiDtPg~~~~~l~~~~ 252 (276)
+ +++|||.. ++|...
T Consensus 87 LFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLa---SLD~~R 163 (352)
T COG4148 87 LFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLA---SLDLPR 163 (352)
T ss_pred cccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchh---hcccch
Confidence 3 69999999 999989
Q ss_pred HHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 253 KQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 253 ~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+.++.-+++.++++ . |+++||.+
T Consensus 164 K~EilpylERL~~e~~IPIlYVSHS~ 189 (352)
T COG4148 164 KREILPYLERLRDEINIPILYVSHSL 189 (352)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEecCH
Confidence 99999999999986 4 99999975
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.36 E-value=9.6e-13 Score=112.82 Aligned_cols=109 Identities=22% Similarity=0.232 Sum_probs=73.3
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc-------c-----ccc
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG-------E-----VST 214 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~-------~-----vs~ 214 (276)
..++++++.+ +|++++|+|+||+|||||+|++.+ ++|++.+++.... - .-.
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----------------~~G~v~~~~~~~~~~~~~~~~~~q~~~l~ 72 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----------------ASGKARLISFLPKFSRNKLIFIDQLQFLI 72 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----------------cCCcEEECCcccccccccEEEEhHHHHHH
Confidence 4577888887 899999999999999999999864 1344444433100 0 000
Q ss_pred ccCCCCc-eeeeEE--------------EEecC--CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 215 KSGRGKH-TTRHVS--------------LLPLS--GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 215 ~~g~gk~-tt~~~~--------------~~~~~--~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+.+.. ...... .+..+ +..+++|||.. ++|....+.+.+.+.++.+.+ +|++||++
T Consensus 73 ~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~---~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~ 149 (176)
T cd03238 73 DVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPST---GLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149 (176)
T ss_pred HcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 1111110 011111 11224 57799999999 999999999999999997665 99999986
No 353
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=3.5e-13 Score=133.21 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=50.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.+++
T Consensus 4 i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~------------~p~~G~i~~~~ 62 (530)
T PRK15064 4 TANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL------------EPSAGNVSLDP 62 (530)
T ss_pred EEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEecC
Confidence 356777887777899999988 89999999999999999999999966 88999998875
No 354
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.34 E-value=1.6e-12 Score=121.28 Aligned_cols=90 Identities=26% Similarity=0.401 Sum_probs=71.2
Q ss_pred EEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCc--------
Q 023887 164 IVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG-------- 235 (276)
Q Consensus 164 lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~-------- 235 (276)
|+|+||+|||||+++|+|.. +|++|+|.++|.++...+. ..+.++++++....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~------------~p~~G~I~i~g~~i~~~~~-------~~~~i~~v~q~~~l~~~~tv~e 61 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE------------QPDSGSIMLDGEDVTNVPP-------HLRHINMVFQSYALFPHMTVEE 61 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC------------CCCceEEEECCEECCCCCH-------HHCCEEEEecCccccCCCcHHH
Confidence 57999999999999999965 8999999999987654321 11234444443211
Q ss_pred ------------------------------------------------------------EEEecCCCCCCCCChhhHHH
Q 023887 236 ------------------------------------------------------------YLADTPGFNQPSLLKVTKQS 255 (276)
Q Consensus 236 ------------------------------------------------------------~iiDtPg~~~~~l~~~~~~~ 255 (276)
+++|||.. ++|....+.
T Consensus 62 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s---~LD~~~~~~ 138 (325)
T TIGR01187 62 NVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLS---ALDKKLRDQ 138 (325)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCc---cCCHHHHHH
Confidence 79999999 999999999
Q ss_pred HHHHHHHHhhc-c--eEEEeeeC
Q 023887 256 LAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 256 l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+.+.+.++.+. + +|++||++
T Consensus 139 l~~~l~~l~~~~g~tiiivTHd~ 161 (325)
T TIGR01187 139 MQLELKTIQEQLGITFVFVTHDQ 161 (325)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999764 5 99999986
No 355
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.34 E-value=5.1e-13 Score=131.86 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=51.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
...+..+|+....++++++.+ +|.+++|||+||+||||||++|+|.. .|++|+|...+
T Consensus 6 ~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~------------~~~~G~i~~~~ 64 (530)
T COG0488 6 LENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL------------EPDSGEVTRPK 64 (530)
T ss_pred EeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC------------cCCCCeEeecC
Confidence 356778888888899999988 89999999999999999999999977 89999987664
No 356
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=9.1e-13 Score=113.05 Aligned_cols=115 Identities=22% Similarity=0.292 Sum_probs=83.1
Q ss_pred CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc---------
Q 023887 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST--------- 214 (276)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~--------- 214 (276)
.+...+.+|++.+ +|+.+.|.|+||+|||||+++|+|.. .|++|+|++++..+....+
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl------------~p~~G~v~~~~~~i~~~~~~~~~~l~yL 80 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL------------RPDAGEVYWQGEPIQNVRESYHQALLYL 80 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc------------CCCCCeEEecCCCCccchhhHHHHHHHh
Confidence 3344567777777 89999999999999999999999977 9999999999887766443
Q ss_pred --ccCCCCceee--eEEEE---ecC-------------------------------------------CCcEEEecCCCC
Q 023887 215 --KSGRGKHTTR--HVSLL---PLS-------------------------------------------GGGYLADTPGFN 244 (276)
Q Consensus 215 --~~g~gk~tt~--~~~~~---~~~-------------------------------------------~~~~iiDtPg~~ 244 (276)
++|.....|. +..++ ... ...+|+|||..
T Consensus 81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~t- 159 (209)
T COG4133 81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFT- 159 (209)
T ss_pred hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCccc-
Confidence 1121111110 00000 000 00189999999
Q ss_pred CCCCChhhHHHHHHHHHHHhhcc--eEEEeee
Q 023887 245 QPSLLKVTKQSLAQTFPEVCAVG--LLYMIHM 274 (276)
Q Consensus 245 ~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~ 274 (276)
.+|......+...|.+-...| |+++||.
T Consensus 160 --aLDk~g~a~l~~l~~~H~~~GGiVllttHq 189 (209)
T COG4133 160 --ALDKEGVALLTALMAAHAAQGGIVLLTTHQ 189 (209)
T ss_pred --ccCHHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 999988888899998888776 8999996
No 357
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.34 E-value=4e-13 Score=135.67 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=51.8
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (276)
++.+.++|+....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.+++.
T Consensus 6 i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~------------~p~~G~I~~~~~ 65 (635)
T PRK11147 6 IHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV------------LLDDGRIIYEQD 65 (635)
T ss_pred EeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC------------CCCCeEEEeCCC
Confidence 456778887777899999988 89999999999999999999999965 899999988763
No 358
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.34 E-value=4.7e-13 Score=133.23 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=50.2
Q ss_pred CceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
.++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++
T Consensus 8 ~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~------------~p~~G~i~~~ 67 (556)
T PRK11819 8 TMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD------------KEFEGEARPA 67 (556)
T ss_pred EEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEec
Confidence 3456778887 567899999998 89999999999999999999999965 8899998765
No 359
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.33 E-value=1.2e-12 Score=137.17 Aligned_cols=122 Identities=19% Similarity=0.300 Sum_probs=104.3
Q ss_pred hcCceeEEEecCCcc---chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 134 TWGYEPLFCSVESKL---GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 134 ~~~~~~~~~s~~~~~---~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
++.++.+.++|.+.+ .+++++..+ +|+++|+||+||+||||.|-+|.+ +|+|++|.|.+||.++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR------------fYdp~~G~V~IDg~di 1054 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER------------FYDPDAGKVKIDGVDI 1054 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH------------hcCCCCCeEEECCccc
Confidence 356788999998655 577788777 899999999999999999999987 8999999999999999
Q ss_pred cccccccCCCCceeeeEEEEecCCCc------------------------------------------------------
Q 023887 210 GEVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------ 235 (276)
Q Consensus 210 ~~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------ 235 (276)
..+..+ |.+++++++.|++-+
T Consensus 1055 k~lnl~-----~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSG 1129 (1228)
T KOG0055|consen 1055 KDLNLK-----WLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSG 1129 (1228)
T ss_pred ccCCHH-----HHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCc
Confidence 988754 488999999998743
Q ss_pred ------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+|+||.+. .||..+.+.+.+.+....+-- .++++|-+
T Consensus 1130 GQKQRIAIARAilRnPkILLLDEATS---ALDseSErvVQeALd~a~~gRT~IvIAHRL 1185 (1228)
T KOG0055|consen 1130 GQKQRIAIARAILRNPKILLLDEATS---ALDSESERVVQEALDRAMEGRTTIVIAHRL 1185 (1228)
T ss_pred hHHHHHHHHHHHHcCCCeeeeeccch---hhhhhhHHHHHHHHHHhhcCCcEEEEecch
Confidence 69999999 999988888999988876532 89999976
No 360
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=8.5e-13 Score=133.42 Aligned_cols=59 Identities=25% Similarity=0.322 Sum_probs=52.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (276)
++.+.++|+....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|++++.
T Consensus 4 i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~------------~pd~G~I~~~~~ 63 (638)
T PRK10636 4 FSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI------------SADGGSYTFPGN 63 (638)
T ss_pred EEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEecCC
Confidence 456788888878899999998 89999999999999999999999965 899999988764
No 361
>PRK13409 putative ATPase RIL; Provisional
Probab=99.33 E-value=3.2e-12 Score=128.20 Aligned_cols=110 Identities=21% Similarity=0.233 Sum_probs=76.2
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCcee-----
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT----- 223 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt----- 223 (276)
++.+++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++ ..++-++.........|
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~------------~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL------------KPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEEe-eeEEEecccccCCCCCcHHHHH
Confidence 56666666 89999999999999999999999976 8899998764 22222111110000000
Q ss_pred ---------------------------eeEEE--------------EecCCCcEEEecCCCCCCCCChhhHHHHHHHHHH
Q 023887 224 ---------------------------RHVSL--------------LPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPE 262 (276)
Q Consensus 224 ---------------------------~~~~~--------------~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~e 262 (276)
+.+.. +..++..+|+|||.. ++|......+.+.+.+
T Consensus 422 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~---~LD~~~~~~l~~~l~~ 498 (590)
T PRK13409 422 RSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSA---HLDVEQRLAVAKAIRR 498 (590)
T ss_pred HHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHH
Confidence 00000 000112289999999 9999999999999999
Q ss_pred Hhhc-c--eEEEeeeC
Q 023887 263 VCAV-G--LLYMIHML 275 (276)
Q Consensus 263 i~~~-~--ii~~~H~~ 275 (276)
+.+. + ++++|||+
T Consensus 499 l~~~~g~tviivsHD~ 514 (590)
T PRK13409 499 IAEEREATALVVDHDI 514 (590)
T ss_pred HHHhCCCEEEEEeCCH
Confidence 9764 4 99999996
No 362
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.33 E-value=4.5e-13 Score=117.71 Aligned_cols=110 Identities=20% Similarity=0.167 Sum_probs=71.7
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccccee-eccccccccccccCCCCcee--ee
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW-FEDQRVGEVSTKSGRGKHTT--RH 225 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~-~~g~~~~~vs~~~g~gk~tt--~~ 225 (276)
++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|. +++.... +......-+..| .+
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~------------~~~sG~i~~~~~~~~~-~~~~~~l~~~ltv~en 69 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD------------APDEGDFIGLRGDALP-LGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc------------cCCCCCEEEecCceec-cccccccCCcCcHHHH
Confidence 45667777 89999999999999999999999965 89999986 6664321 000000000000 00
Q ss_pred --------------------------------EEEEe--------------cCCCcEEEecCCCCCCCCChhhHHHHHHH
Q 023887 226 --------------------------------VSLLP--------------LSGGGYLADTPGFNQPSLLKVTKQSLAQT 259 (276)
Q Consensus 226 --------------------------------~~~~~--------------~~~~~~iiDtPg~~~~~l~~~~~~~l~~~ 259 (276)
+..++ .++..+++|||.. ++|......+.+.
T Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~---~lD~~~~~~~~~~ 146 (213)
T PRK15177 70 ARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLY---TGDNATQLRMQAA 146 (213)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCc---cCCHHHHHHHHHH
Confidence 00000 0112279999998 8888888888887
Q ss_pred HHH-HhhcceEEEeeeC
Q 023887 260 FPE-VCAVGLLYMIHML 275 (276)
Q Consensus 260 f~e-i~~~~ii~~~H~~ 275 (276)
+.+ +.+.++|++||++
T Consensus 147 l~~~~~~~~ii~vsH~~ 163 (213)
T PRK15177 147 LACQLQQKGLIVLTHNP 163 (213)
T ss_pred HHHHhhCCcEEEEECCH
Confidence 654 4344599999986
No 363
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.32 E-value=1.8e-12 Score=141.24 Aligned_cols=65 Identities=18% Similarity=0.334 Sum_probs=54.9
Q ss_pred hcCceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec-ccc
Q 023887 134 TWGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQR 208 (276)
Q Consensus 134 ~~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~-g~~ 208 (276)
.+.++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|.| +|+|++|+|+++ |.+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~g------------l~~p~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER------------LYDPTEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHH------------hccCCCCeEEEeCCcc
Confidence 35567888888742 5799999998 899999999999999999999999 569999999994 555
Q ss_pred cc
Q 023887 209 VG 210 (276)
Q Consensus 209 ~~ 210 (276)
+.
T Consensus 450 i~ 451 (1466)
T PTZ00265 450 LK 451 (1466)
T ss_pred hh
Confidence 43
No 364
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=8.5e-13 Score=117.30 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=79.9
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceee
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR 224 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~ 224 (276)
....|+++++.+ +|++++|+|+||+|||||+++|+|.. +|++|++.++|+-..-+....|..+..|-
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~------------~Pt~G~v~v~G~v~~li~lg~Gf~pelTG 106 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY------------KPTSGKVKVTGKVAPLIELGAGFDPELTG 106 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc------------CCCCceEEEcceEehhhhcccCCCcccch
Confidence 345789999998 89999999999999999999999954 99999998887643222222222222220
Q ss_pred -------------------------------------eEE--------------EEecCCCcEEEecCCCCCCCCChhhH
Q 023887 225 -------------------------------------HVS--------------LLPLSGGGYLADTPGFNQPSLLKVTK 253 (276)
Q Consensus 225 -------------------------------------~~~--------------~~~~~~~~~iiDtPg~~~~~l~~~~~ 253 (276)
.+. ...+++..+|+||-.. -.|..=.
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvla---vGD~~F~ 183 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLA---VGDAAFQ 183 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhh---cCCHHHH
Confidence 000 1112234489999876 5565445
Q ss_pred HHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 254 QSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 254 ~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+...+.+.++.+.+ ++++||+++
T Consensus 184 ~K~~~rl~e~~~~~~tiv~VSHd~~ 208 (249)
T COG1134 184 EKCLERLNELVEKNKTIVLVSHDLG 208 (249)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCHH
Confidence 66677778886655 999999863
No 365
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.32 E-value=2.5e-12 Score=137.07 Aligned_cols=122 Identities=24% Similarity=0.259 Sum_probs=104.9
Q ss_pred cCceeEEEecCCc--cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVESK--LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~~--~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+...|..+ ..++++++.+ +|++++|||++|||||||+++|.+.. +|.+|+|.+||.++++
T Consensus 1139 I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~------------e~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1139 IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV------------EPAEGEILIDGVDISK 1206 (1381)
T ss_pred EEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc------------CccCCeEEEcCeeccc
Confidence 4466777777654 6799999998 89999999999999999999999965 9999999999999999
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
+.-++ .++.++.+||++-+
T Consensus 1207 igL~d-----LRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1207 IGLHD-----LRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred ccHHH-----HHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence 88766 78889999998632
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++||.+. +.|..+..-+.+++++-.+.. +|.++|.+|
T Consensus 1282 QLlCLARALLr~skILvLDEATA---sVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~ 1335 (1381)
T KOG0054|consen 1282 QLLCLARALLRKSKILVLDEATA---SVDPETDALIQKTIREEFKDCTVLTIAHRLN 1335 (1381)
T ss_pred HHHHHHHHHhccCCEEEEecccc---cCChHHHHHHHHHHHHHhcCCeEEEEeeccc
Confidence 69999999 999988888888888766655 999999875
No 366
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.32 E-value=6.1e-12 Score=115.40 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=43.2
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|
T Consensus 49 ~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~------------~p~~G~I~i~g 98 (282)
T cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL------------EPSEGKIKHSG 98 (282)
T ss_pred cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECC
Confidence 345788888887 89999999999999999999999965 89999988765
No 367
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.32 E-value=2.5e-12 Score=124.07 Aligned_cols=109 Identities=26% Similarity=0.320 Sum_probs=93.1
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeee
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~ 225 (276)
...+++++|.+ +|+-+++|||||+|||||.++|.|. ++|.+|.|.+||-++....+.. .-++
T Consensus 349 ~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~------------w~p~~G~VRLDga~l~qWd~e~-----lG~h 411 (580)
T COG4618 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI------------WPPTSGSVRLDGADLRQWDREQ-----LGRH 411 (580)
T ss_pred CcceecceeEecCCceEEEECCCCccHHHHHHHHHcc------------cccCCCcEEecchhhhcCCHHH-----hccc
Confidence 46789999998 8999999999999999999999994 5999999999999888766432 4466
Q ss_pred EEEEecCCCc----------------------------------------------------------------------
Q 023887 226 VSLLPLSGGG---------------------------------------------------------------------- 235 (276)
Q Consensus 226 ~~~~~~~~~~---------------------------------------------------------------------- 235 (276)
++|++|+-.+
T Consensus 412 iGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P 491 (580)
T COG4618 412 IGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDP 491 (580)
T ss_pred cCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCC
Confidence 7788776322
Q ss_pred --EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 --YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 --~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.++|||-. +||......+.+.+.+++++| +++++|-.
T Consensus 492 ~lvVLDEPNs---NLD~~GE~AL~~Ai~~~k~rG~~vvviaHRP 532 (580)
T COG4618 492 FLVVLDEPNS---NLDSEGEAALAAAILAAKARGGTVVVIAHRP 532 (580)
T ss_pred cEEEecCCCC---CcchhHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 59999999 999988999999999999998 89999953
No 368
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.6e-12 Score=109.49 Aligned_cols=121 Identities=18% Similarity=0.180 Sum_probs=89.0
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc-----cccccc
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-----QRVGEV 212 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-----~~~~~v 212 (276)
.+..+|+...+-++++|.+ +|+..+|+|.||+|||||+++|.+.. .|+.|++.+.- .++-..
T Consensus 11 ~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl------------~p~~G~v~Y~~r~~~~~dl~~m 78 (258)
T COG4107 11 GLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL------------TPDAGTVTYRMRDGQPRDLYTM 78 (258)
T ss_pred hhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhccc------------CCCCCeEEEEcCCCCchhHhhh
Confidence 3455677777888999987 99999999999999999999999977 89999998754 222233
Q ss_pred ccccCCCCceeeeEEEEecCCC----------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGG---------------------------------------------------------- 234 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~---------------------------------------------------------- 234 (276)
++. .+.+-.++.-+++.|.+.
T Consensus 79 sEa-eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMq 157 (258)
T COG4107 79 SEA-ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQ 157 (258)
T ss_pred chH-HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHH
Confidence 321 122223344455554431
Q ss_pred --------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 --------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 --------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..++|+|+- ++|---+..+.+++..+... + ++++|||+
T Consensus 158 QRLQiARnLVt~PrLvfMDEPTG---GLDVSVQARLLDllrgLv~~l~la~viVTHDl 212 (258)
T COG4107 158 QRLQIARNLVTRPRLVFMDEPTG---GLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred HHHHHHHHhccCCceEEecCCCC---CcchhhHHHHHHHHHHHHHhcCceEEEEechh
Confidence 169999999 89876677888888888753 5 89999997
No 369
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.31 E-value=1.3e-12 Score=114.34 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=85.1
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC-------
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG------- 217 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g------- 217 (276)
++..+++++..+ +|..+.++|.||+|||||+|+|+|.. .|++|.|.++|.++...+....
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l------------~~t~G~I~Idg~dVtk~~~~~RA~~larV 85 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL------------KPTSGQILIDGVDVTKKSVAKRANLLARV 85 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcc------------ccCCceEEECceecccCCHHHHhhHHHHH
Confidence 345677777777 89999999999999999999999977 9999999999998876443210
Q ss_pred ----------------------------------------------------CCCceeeeEEEEec--------------
Q 023887 218 ----------------------------------------------------RGKHTTRHVSLLPL-------------- 231 (276)
Q Consensus 218 ----------------------------------------------------~gk~tt~~~~~~~~-------------- 231 (276)
..++.+..+++++-
T Consensus 86 fQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~ 165 (263)
T COG1101 86 FQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLH 165 (263)
T ss_pred hcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcC
Confidence 00011111111110
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc---eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG---LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~---ii~~~H~~ 275 (276)
++..+++||-+. .+|+...+.+.+.=.++.+.. .+++||+|
T Consensus 166 ~pkiLLLDEHTA---ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm 209 (263)
T COG1101 166 PPKILLLDEHTA---ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM 209 (263)
T ss_pred CCcEEEecchhh---cCCcchHHHHHHHHHHHHHhcCCceEEEeccH
Confidence 011179999999 999999999999888888764 89999987
No 370
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.30 E-value=1.2e-12 Score=113.07 Aligned_cols=125 Identities=18% Similarity=0.340 Sum_probs=95.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc-cccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-~~~~~vs~ 214 (276)
...+.+|+..-..+++|++.+ +|+.-+++||||+||||+|..|.|.. .|+.|+++++| .++...++
T Consensus 8 ~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt------------rp~~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 8 LDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT------------RPQEGEVLFDGDTDLTKLPE 75 (249)
T ss_pred EeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC------------CCCcceEEEcCchhhccCCH
Confidence 356788888888999999988 89999999999999999999999987 89999999998 55544221
Q ss_pred c----cCCCCceee------------------------------------------------------------------
Q 023887 215 K----SGRGKHTTR------------------------------------------------------------------ 224 (276)
Q Consensus 215 ~----~g~gk~tt~------------------------------------------------------------------ 224 (276)
. -|.||...+
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQw 155 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQW 155 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhh
Confidence 1 122221111
Q ss_pred -eEE-EEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 225 -HVS-LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 225 -~~~-~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
.++ ++-|+++.+++|+|-. ++.+.+.+...+++..++..- ++++.|||.
T Consensus 156 LEIGMll~Q~P~lLLlDEPvA---GMTd~Et~~taeLl~~la~~hsilVVEHDM~ 207 (249)
T COG4674 156 LEIGMLLAQDPKLLLLDEPVA---GMTDAETEKTAELLKSLAGKHSILVVEHDMG 207 (249)
T ss_pred hhhheeeccCCcEEEecCccC---CCcHHHHHHHHHHHHHHhcCceEEEEeccHH
Confidence 111 1223445589999999 998888889999999998764 999999984
No 371
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.30 E-value=3.2e-12 Score=127.10 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=49.8
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.+++
T Consensus 7 ~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~------------~p~~G~i~~~~ 66 (552)
T TIGR03719 7 MNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD------------KEFNGEARPAP 66 (552)
T ss_pred EeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEecC
Confidence 456777886 556889999988 89999999999999999999999965 88999988764
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.30 E-value=5.2e-12 Score=124.73 Aligned_cols=112 Identities=26% Similarity=0.364 Sum_probs=73.7
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc-cccccccccc---------
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED-QRVGEVSTKS--------- 216 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g-~~~~~vs~~~--------- 216 (276)
..++++++.+ +|.+++|+|+||+||||||+.|+|.. .|.+|+|.+.. ..++......
T Consensus 336 ~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~------------~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~ 403 (530)
T COG0488 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL------------GPLSGTVKVGETVKIGYFDQHRDELDPDKTV 403 (530)
T ss_pred eeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc------------ccCCceEEeCCceEEEEEEehhhhcCccCcH
Confidence 4677788877 89999999999999999999999977 67788775432 1111111000
Q ss_pred ---------CC---------------CCceeeeEE--------------EEecCCCcEEEecCCCCCCCCChhhHHHHHH
Q 023887 217 ---------GR---------------GKHTTRHVS--------------LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQ 258 (276)
Q Consensus 217 ---------g~---------------gk~tt~~~~--------------~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~ 258 (276)
.. +....+.+. ++...++.+|+|||+. +||..+.+.|.+
T Consensus 404 ~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTN---hLDi~s~~aLe~ 480 (530)
T COG0488 404 LEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTN---HLDIESLEALEE 480 (530)
T ss_pred HHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCc---cCCHHHHHHHHH
Confidence 00 000000000 1111223389999999 999888888888
Q ss_pred HHHHHhhcceEEEeeeC
Q 023887 259 TFPEVCAVGLLYMIHML 275 (276)
Q Consensus 259 ~f~ei~~~~ii~~~H~~ 275 (276)
.+.++.-. +|++|||.
T Consensus 481 aL~~f~Gt-vl~VSHDr 496 (530)
T COG0488 481 ALLDFEGT-VLLVSHDR 496 (530)
T ss_pred HHHhCCCe-EEEEeCCH
Confidence 88776422 99999984
No 373
>PLN03073 ABC transporter F family; Provisional
Probab=99.29 E-value=7.4e-12 Score=128.00 Aligned_cols=121 Identities=21% Similarity=0.230 Sum_probs=78.5
Q ss_pred eEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-cccccccc
Q 023887 139 PLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGEVSTK 215 (276)
Q Consensus 139 ~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~vs~~ 215 (276)
.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|++++. .++-++..
T Consensus 513 ~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll------------~p~~G~I~~~~~~~igyv~Q~ 580 (718)
T PLN03073 513 DASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL------------QPSSGTVFRSAKVRMAVFSQH 580 (718)
T ss_pred eeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCceEEECCceeEEEEecc
Confidence 34556643 34688888887 89999999999999999999999976 899999886542 11111110
Q ss_pred c-------------------CCCC---------------ceeeeEEEEe--------------cCCCcEEEecCCCCCCC
Q 023887 216 S-------------------GRGK---------------HTTRHVSLLP--------------LSGGGYLADTPGFNQPS 247 (276)
Q Consensus 216 ~-------------------g~gk---------------~tt~~~~~~~--------------~~~~~~iiDtPg~~~~~ 247 (276)
. +..+ ...+.+..++ ..+..+|+|||+. +
T Consensus 581 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~---~ 657 (718)
T PLN03073 581 HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSN---H 657 (718)
T ss_pred ccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCC---C
Confidence 0 0000 0000000000 0011289999999 9
Q ss_pred CChhhHHHHHHHHHHHhhcceEEEeeeC
Q 023887 248 LLKVTKQSLAQTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 248 l~~~~~~~l~~~f~ei~~~~ii~~~H~~ 275 (276)
+|....+.+.+.+.++. ..+|++|||+
T Consensus 658 LD~~s~~~l~~~L~~~~-gtvIivSHd~ 684 (718)
T PLN03073 658 LDLDAVEALIQGLVLFQ-GGVLMVSHDE 684 (718)
T ss_pred CCHHHHHHHHHHHHHcC-CEEEEEECCH
Confidence 99988888877776652 1399999986
No 374
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.29 E-value=5e-12 Score=105.43 Aligned_cols=108 Identities=26% Similarity=0.395 Sum_probs=83.3
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
-+.++++.+ +|+++.++||||+|||||+..+.|.+.. -| --+|+++++++++..++. ..++++
T Consensus 17 LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~--------~F-~~~G~~~l~~~~l~~lPa-------~qRq~G 80 (213)
T COG4136 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAG--------QF-SCTGELWLNEQRLDMLPA-------AQRQIG 80 (213)
T ss_pred EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhccc--------Cc-ceeeEEEECCeeccccch-------hhhhee
Confidence 355566666 8999999999999999999999997621 01 135999999999988764 346778
Q ss_pred EEecCCCc-------------------------------------------------------------------EEEec
Q 023887 228 LLPLSGGG-------------------------------------------------------------------YLADT 240 (276)
Q Consensus 228 ~~~~~~~~-------------------------------------------------------------------~iiDt 240 (276)
+++|+.-. +++||
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDE 160 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDE 160 (213)
T ss_pred eeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCC
Confidence 77776311 69999
Q ss_pred CCCCCCCCChhhHHHHHH-HHHHHhhcc--eEEEeeeC
Q 023887 241 PGFNQPSLLKVTKQSLAQ-TFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 241 Pg~~~~~l~~~~~~~l~~-~f~ei~~~~--ii~~~H~~ 275 (276)
|.. .+|..-.++.++ .|.+.++.| ++++|||.
T Consensus 161 PFS---~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 161 PFS---RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred chh---HHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 998 787655555554 788998888 89999996
No 375
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.27 E-value=8.6e-12 Score=135.51 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=87.9
Q ss_pred ceeEEEecC----CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVE----SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~----~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.+++. ....+++++..+ +|+.++|+|+||+|||||+|+|+|... ...|++|+|.++|+++..
T Consensus 762 ~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~---------~g~~~~G~I~i~G~~~~~ 832 (1394)
T TIGR00956 762 WRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVT---------TGVITGGDRLVNGRPLDS 832 (1394)
T ss_pred EEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---------CCCcceeEEEECCEECCh
Confidence 344555553 345788888887 899999999999999999999999752 013788999999876521
Q ss_pred --------cccccC----------------------------------------CCCceeeeEE----------------
Q 023887 212 --------VSTKSG----------------------------------------RGKHTTRHVS---------------- 227 (276)
Q Consensus 212 --------vs~~~g----------------------------------------~gk~tt~~~~---------------- 227 (276)
+...+. ......+.+.
T Consensus 833 ~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~I 912 (1394)
T TIGR00956 833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTI 912 (1394)
T ss_pred hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHH
Confidence 010000 0000000010
Q ss_pred --EEecCCC-cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 228 --LLPLSGG-GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 228 --~~~~~~~-~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+-.+++ .+++|||+. ++|......+.+.+.++++.| +|+++|+++
T Consensus 913 a~aL~~~P~~iLlLDEPTs---gLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~ 963 (1394)
T TIGR00956 913 GVELVAKPKLLLFLDEPTS---GLDSQTAWSICKLMRKLADHGQAILCTIHQPS 963 (1394)
T ss_pred HHHHHcCCCeEEEEcCCCC---CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 0000122 479999999 999999999999999998776 999999863
No 376
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.24 E-value=1.1e-11 Score=116.99 Aligned_cols=110 Identities=28% Similarity=0.354 Sum_probs=91.9
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
.++++++.+ +|+++++||.||+|||||=.+|++.. +++|+|+|+|+++...+.+. -+..++.++
T Consensus 302 AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~-------------~s~G~I~F~G~~i~~~~~~~--mrplR~~mQ 366 (534)
T COG4172 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-------------PSQGEIRFDGQDIDGLSRKE--MRPLRRRMQ 366 (534)
T ss_pred EeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc-------------CcCceEEECCccccccChhh--hhhhhhhce
Confidence 456677666 89999999999999999999999965 45599999999998877543 245778899
Q ss_pred EEecCCCc------------------------------------------------------------------------
Q 023887 228 LLPLSGGG------------------------------------------------------------------------ 235 (276)
Q Consensus 228 ~~~~~~~~------------------------------------------------------------------------ 235 (276)
+++|++.+
T Consensus 367 vVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~ 446 (534)
T COG4172 367 VVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPE 446 (534)
T ss_pred EEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCc
Confidence 99998744
Q ss_pred -EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|||+. .||.--+.++.+++.++.+. + .+++|||+.
T Consensus 447 ~i~LDEPTS---ALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~ 488 (534)
T COG4172 447 LILLDEPTS---ALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA 488 (534)
T ss_pred EEEecCCch---HhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 69999999 89887788899999999874 5 899999973
No 377
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.22 E-value=1.7e-11 Score=123.52 Aligned_cols=115 Identities=23% Similarity=0.268 Sum_probs=81.1
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc---cccceeeccccccc---------c
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQRVGE---------V 212 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p---~~G~i~~~g~~~~~---------v 212 (276)
+...+++++..+ +|+.++|+|+||+|||||+|+|+|.. +| .+|+|.++|.++.. +
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~------------~~~~~~~G~i~~~g~~~~~~~~~~~i~yv 104 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS------------PKGVKGSGSVLLNGMPIDAKEMRAISAYV 104 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC------------CCCCcceeEEEECCEECCHHHHhhhceee
Confidence 455788888887 89999999999999999999999965 44 37899998876421 0
Q ss_pred cccc----------------------------------------CCCCceeeeEEE----EecC----------------
Q 023887 213 STKS----------------------------------------GRGKHTTRHVSL----LPLS---------------- 232 (276)
Q Consensus 213 s~~~----------------------------------------g~gk~tt~~~~~----~~~~---------------- 232 (276)
...+ |......+.++. -.++
T Consensus 105 ~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~ 184 (617)
T TIGR00955 105 QQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD 184 (617)
T ss_pred ccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcC
Confidence 0000 000000011110 0011
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+++|||.. ++|..+...+.+.+.++.+.| +|+++|++
T Consensus 185 p~vlllDEPts---gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~ 226 (617)
T TIGR00955 185 PPLLFCDEPTS---GLDSFMAYSVVQVLKGLAQKGKTIICTIHQP 226 (617)
T ss_pred CCEEEeeCCCc---chhHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 12279999999 999999999999999998766 89999986
No 378
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.20 E-value=1.3e-11 Score=105.22 Aligned_cols=103 Identities=25% Similarity=0.358 Sum_probs=75.4
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc----------------------
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK---------------------- 215 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~---------------------- 215 (276)
.|++.=+|||||+|||||+-.|+|.. |-+|+|.++|+++...+..
T Consensus 24 aGe~~HliGPNGaGKSTLLA~lAGm~-------------~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~ 90 (248)
T COG4138 24 AGEILHLVGPNGAGKSTLLARMAGMT-------------SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVW 90 (248)
T ss_pred cceEEEEECCCCccHHHHHHHHhCCC-------------CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhh
Confidence 68999999999999999999999964 7899999999877541100
Q ss_pred --------------------------cCC---------CCcee-eeEEEEec-C------CCcEEEecCCCCCCCCChhh
Q 023887 216 --------------------------SGR---------GKHTT-RHVSLLPL-S------GGGYLADTPGFNQPSLLKVT 252 (276)
Q Consensus 216 --------------------------~g~---------gk~tt-~~~~~~~~-~------~~~~iiDtPg~~~~~l~~~~ 252 (276)
+.. |.-.+ +-.+.+.| . .+.+++|||.. ++|-..
T Consensus 91 ~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~---~LDvAQ 167 (248)
T COG4138 91 HYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMN---SLDVAQ 167 (248)
T ss_pred hhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCc---chhHHH
Confidence 000 00011 11111111 1 13489999999 898877
Q ss_pred HHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 253 KQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 253 ~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+.+++.+++.+| |++++||+|
T Consensus 168 ~~aLdrll~~~c~~G~~vims~HDLN 193 (248)
T COG4138 168 QSALDRLLSALCQQGLAIVMSSHDLN 193 (248)
T ss_pred HHHHHHHHHHHHhCCcEEEEeccchh
Confidence 888999999999998 999999986
No 379
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.19 E-value=5.4e-11 Score=120.81 Aligned_cols=59 Identities=24% Similarity=0.224 Sum_probs=48.2
Q ss_pred cCceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
+.++.+.++|. +...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++
T Consensus 452 i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~------------~~~~G~i~~~ 512 (659)
T TIGR00954 452 IKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW------------PVYGGRLTKP 512 (659)
T ss_pred EEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCeEeec
Confidence 34566777774 346799999888 89999999999999999999999954 7888877654
No 380
>PLN03140 ABC transporter G family member; Provisional
Probab=99.18 E-value=4.4e-11 Score=130.24 Aligned_cols=116 Identities=19% Similarity=0.189 Sum_probs=79.7
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc---------ccccC
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV---------STKSG 217 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v---------s~~~g 217 (276)
..+++++..+ +|+.++|+|+||+|||||+|+|+|... .-+.+|+|.++|.+.... ...+.
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~----------~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~ 963 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT----------GGYIEGDIRISGFPKKQETFARISGYCEQNDI 963 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC----------CCcccceEEECCccCChHHhhhheEEEccccc
Confidence 4677888877 899999999999999999999999651 014679998888653210 00000
Q ss_pred C------------------CCceee------------eEEE-------E------ec----------------CCCcEEE
Q 023887 218 R------------------GKHTTR------------HVSL-------L------PL----------------SGGGYLA 238 (276)
Q Consensus 218 ~------------------gk~tt~------------~~~~-------~------~~----------------~~~~~ii 238 (276)
. .+..+. ...+ + .+ ++..+++
T Consensus 964 ~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~L 1043 (1470)
T PLN03140 964 HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFM 1043 (1470)
T ss_pred cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEE
Confidence 0 000000 0000 0 00 1122799
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
|||+. +||......+.+.+.++++.| +|+++|+++
T Consensus 1044 DEPTs---gLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1044 DEPTS---GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080 (1470)
T ss_pred eCCCC---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 99999 999999999999999998877 999999863
No 381
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.16 E-value=7e-11 Score=101.49 Aligned_cols=85 Identities=21% Similarity=0.250 Sum_probs=62.0
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
.++.++|.+ +|++.+++|.||+|||||.++|+|.. +|++|+|.+|+..+.--... ....++.
T Consensus 28 AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi------------~PTsG~il~n~~~L~~~Dy~-----~R~k~IR 90 (267)
T COG4167 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI------------EPTSGEILINDHPLHFGDYS-----FRSKRIR 90 (267)
T ss_pred cccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc------------CCCCceEEECCccccccchH-----hhhhhee
Confidence 345566666 79999999999999999999999966 99999999999876432211 1346788
Q ss_pred EEecCCCc---------EEEecCCCCCCCCCh
Q 023887 228 LLPLSGGG---------YLADTPGFNQPSLLK 250 (276)
Q Consensus 228 ~~~~~~~~---------~iiDtPg~~~~~l~~ 250 (276)
|++|+++. .|+|.|.-....+++
T Consensus 91 MiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~ 122 (267)
T COG4167 91 MIFQDPNTSLNPRLRIGQILDFPLRLNTDLEP 122 (267)
T ss_pred eeecCCccccChhhhhhhHhcchhhhcccCCh
Confidence 88887643 455555554444443
No 382
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.16 E-value=6.8e-11 Score=119.09 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=82.4
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeee
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~ 225 (276)
+..+++++... +|+..|++|+||+|||||||+|+|..... ...+|+|.+||++...- ...+.
T Consensus 43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~---------~~~~G~ilvNG~~~~~~--------~~~~~ 105 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGG---------LKLSGEILLNGRPRDSR--------SFRKI 105 (613)
T ss_pred ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCC---------CcceEEEEECCccCchh--------hhhhe
Confidence 44566666665 89999999999999999999999976210 25789999999443221 02233
Q ss_pred EEEEecCCC-----------------------------------------------------------------------
Q 023887 226 VSLLPLSGG----------------------------------------------------------------------- 234 (276)
Q Consensus 226 ~~~~~~~~~----------------------------------------------------------------------- 234 (276)
.+++.|++-
T Consensus 106 s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~El 185 (613)
T KOG0061|consen 106 SGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALEL 185 (613)
T ss_pred eEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHH
Confidence 344444321
Q ss_pred -----cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 -----GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 -----~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|||+. +||......+.+.++++++.| ||++.|..
T Consensus 186 l~~P~iLflDEPTS---GLDS~sA~~vv~~Lk~lA~~grtVi~tIHQP 230 (613)
T KOG0061|consen 186 LTDPSILFLDEPTS---GLDSFSALQVVQLLKRLARSGRTVICTIHQP 230 (613)
T ss_pred HcCCCEEEecCCCC---CcchhhHHHHHHHHHHHHhCCCEEEEEEeCC
Confidence 179999999 999999999999999999988 88889964
No 383
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.16 E-value=2.3e-11 Score=102.62 Aligned_cols=122 Identities=21% Similarity=0.263 Sum_probs=91.5
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
+.+.++|+....+-++.+.. .|++++++||||+|||||++.|.=.. .|.+|+..+-+.... .|..+
T Consensus 6 ~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle------------~p~sg~l~ia~~~fd-~s~~~ 72 (242)
T COG4161 6 NGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLE------------MPRSGTLNIAGNHFD-FSKTP 72 (242)
T ss_pred cccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHh------------CCCCCeEEecccccc-cccCc
Confidence 44667788878888777765 89999999999999999999987544 789999877654321 11111
Q ss_pred --CCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 217 --GRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 217 --g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
...+..+++++|++|....
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvai 152 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHH
Confidence 1223355667777665433
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
++.|+|+. .+|+....++...++|+.+.| -+++||..
T Consensus 153 aralmmkpqvllfdepta---aldpeitaqvv~iikel~~tgitqvivthev 201 (242)
T COG4161 153 ARALMMEPQVLLFDEPTA---ALDPEITAQIVSIIKELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHhcCCcEEeecCccc---ccCHHHHHHHHHHHHHHHhcCceEEEEEeeh
Confidence 69999999 999988888999999999988 48889975
No 384
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.15 E-value=3.9e-11 Score=125.38 Aligned_cols=119 Identities=15% Similarity=0.208 Sum_probs=92.7
Q ss_pred eEEEecCCcc-chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc
Q 023887 139 PLFCSVESKL-GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS 216 (276)
Q Consensus 139 ~~~~s~~~~~-~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~ 216 (276)
.+..-|.... .++++++.+ +|++.++.|+|||||||++|+|.|.. +|++|++++.|..+..-....
T Consensus 569 ~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~------------~~t~G~a~i~g~~i~~~~~~~ 636 (885)
T KOG0059|consen 569 NLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET------------KPTSGEALIKGHDITVSTDFQ 636 (885)
T ss_pred ceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc------------cCCcceEEEecCccccccchh
Confidence 3444555444 667777776 89999999999999999999999977 999999999887765422111
Q ss_pred CCCCceeeeEEEEecCCCc-------------------------------------------------------------
Q 023887 217 GRGKHTTRHVSLLPLSGGG------------------------------------------------------------- 235 (276)
Q Consensus 217 g~gk~tt~~~~~~~~~~~~------------------------------------------------------------- 235 (276)
. ..++++++||....
T Consensus 637 ~----~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aia 712 (885)
T KOG0059|consen 637 Q----VRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIA 712 (885)
T ss_pred h----hhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHH
Confidence 1 33456666665321
Q ss_pred -------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 -------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 -------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+++|+|.- ++|+..++.+++.++++++.+ ++++||.|+
T Consensus 713 lig~p~vi~LDEPst---GmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe 759 (885)
T KOG0059|consen 713 LIGDPSVILLDEPST---GLDPKARRHLWDIIARLRKNGKAIILTSHSME 759 (885)
T ss_pred HhcCCCEEEecCCCC---CCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 69999999 999999999999999999875 999999874
No 385
>PLN03073 ABC transporter F family; Provisional
Probab=99.14 E-value=1.6e-11 Score=125.63 Aligned_cols=63 Identities=17% Similarity=0.071 Sum_probs=50.0
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (276)
.++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|... ...|.+|+|.+.++
T Consensus 179 ~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~---------~g~p~~g~I~~~~Q 242 (718)
T PLN03073 179 HMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI---------DGIPKNCQILHVEQ 242 (718)
T ss_pred EEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---------CCCCCCCEEEEEec
Confidence 3456888887777899999988 899999999999999999999998531 01477777765443
No 386
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.14 E-value=1.1e-10 Score=101.49 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=34.1
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
..+++|||.. ++|......+.+.+.++.+.. +|++||++
T Consensus 137 ~illlDEP~~---~LD~~~~~~l~~~l~~~~~~~tiIiitH~~ 176 (197)
T cd03278 137 PFCVLDEVDA---ALDDANVERFARLLKEFSKETQFIVITHRK 176 (197)
T ss_pred CEEEEeCCcc---cCCHHHHHHHHHHHHHhccCCEEEEEECCH
Confidence 4589999999 999999999999999987633 99999986
No 387
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.4e-11 Score=112.80 Aligned_cols=120 Identities=23% Similarity=0.321 Sum_probs=98.9
Q ss_pred CceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 136 GYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 136 ~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
.|..+.+.|. ..+++.++++.+ .|++++++|+||+||||++++|.+ ||++.+|.|.++|+++..+.
T Consensus 264 ~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfR------------FyD~~sG~I~id~qdir~vt 331 (497)
T COG5265 264 AFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFR------------FYDVNSGSITIDGQDIRDVT 331 (497)
T ss_pred EEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHH------------HhCCcCceEEEcchhHHHhH
Confidence 3456666664 456899999987 899999999999999999999998 88999999999999998865
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
.+. .++.++++||+.-+
T Consensus 332 q~s-----lR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekq 406 (497)
T COG5265 332 QQS-----LRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQ 406 (497)
T ss_pred HHH-----HHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHH
Confidence 443 66777777776311
Q ss_pred --------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 --------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 --------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++||.+. .||.-+.+++.+.+.++...- .++++|-+
T Consensus 407 rvaiar~ilk~p~il~~deats---aldt~te~~iq~~l~~~~~~rttlviahrl 458 (497)
T COG5265 407 RVAIARTILKNPPILILDEATS---ALDTHTEQAIQAALREVSAGRTTLVIAHRL 458 (497)
T ss_pred HHHHHHHHhcCCCEEEEehhhh---HhhhhHHHHHHHHHHHHhCCCeEEEEeehh
Confidence 68999998 899888999999999987533 88999976
No 388
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.11 E-value=4e-11 Score=113.00 Aligned_cols=67 Identities=18% Similarity=0.343 Sum_probs=53.8
Q ss_pred hhcCceeEEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 133 HTWGYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 133 ~~~~~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
..+.++.+.++|... .-+.-++..+ +|+.+-++|.||||||||+.+|.| +|+|++|+|.+||.++.
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtG------------L~~PqsG~I~ldg~pV~ 388 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTG------------LYQPQSGEILLDGKPVS 388 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhc------------ccCCCCCceeECCccCC
Confidence 345566777777654 3344555555 899999999999999999999999 56999999999999886
Q ss_pred c
Q 023887 211 E 211 (276)
Q Consensus 211 ~ 211 (276)
.
T Consensus 389 ~ 389 (546)
T COG4615 389 A 389 (546)
T ss_pred C
Confidence 5
No 389
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.10 E-value=1.7e-10 Score=125.61 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=44.4
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
..+++++..+ +|+.++|+|+||+|||||+|+|+|... ....|.+|+|.++|.++
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~--------~~~~~~~G~I~~~G~~~ 129 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTD--------GFHIGVEGVITYDGITP 129 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC--------CCCCCceeEEEECCEeh
Confidence 4577777776 899999999999999999999999641 12367899999998755
No 390
>COG1159 Era GTPase [General function prediction only]
Probab=99.05 E-value=5.6e-10 Score=101.88 Aligned_cols=84 Identities=26% Similarity=0.415 Sum_probs=52.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEec-CCCcEEE
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL-SGGGYLA 238 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~-~~~~~ii 238 (276)
..++++|+||||||||+|.|.| ++++-+|+++...||.-+ +.+.. +.+..++
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G-------------------------~KisIvS~k~QTTR~~I~--GI~t~~~~QiIfv 59 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVG-------------------------QKISIVSPKPQTTRNRIR--GIVTTDNAQIIFV 59 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhc-------------------------CceEeecCCcchhhhhee--EEEEcCCceEEEE
Confidence 3789999999999999999998 456777777763222222 23333 3466899
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEE
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYM 271 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~ 271 (276)
||||+..|. ..............+.+.. ++++
T Consensus 60 DTPGih~pk-~~l~~~m~~~a~~sl~dvDlilfv 92 (298)
T COG1159 60 DTPGIHKPK-HALGELMNKAARSALKDVDLILFV 92 (298)
T ss_pred eCCCCCCcc-hHHHHHHHHHHHHHhccCcEEEEE
Confidence 999997773 2223333333334444444 4443
No 391
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.05 E-value=4.4e-10 Score=123.34 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=50.6
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
+.++.+.++|.. ...++++++.+ +|+.++++|+||+|||||+++|+|.. +|++|+|.++|
T Consensus 637 i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~------------~~~~G~i~~~g 699 (1522)
T TIGR00957 637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM------------DKVEGHVHMKG 699 (1522)
T ss_pred EEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------ccCCcEEEECC
Confidence 345667777754 35789999887 89999999999999999999999965 89999998876
No 392
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.04 E-value=1.1e-09 Score=86.49 Aligned_cols=78 Identities=29% Similarity=0.418 Sum_probs=46.9
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEE--EecCC-CcEE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL--LPLSG-GGYL 237 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~--~~~~~-~~~i 237 (276)
.++|+|++|||||||+|+|.+.. ...++..++ +|+...+ +.... ...+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~-------------------------~~~~~~~~~----~T~~~~~~~~~~~~~~~~~ 51 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK-------------------------LAKVSNIPG----TTRDPVYGQFEYNNKKFIL 51 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST-------------------------SSEESSSTT----SSSSEEEEEEEETTEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHhccc-------------------------ccccccccc----ceeeeeeeeeeeceeeEEE
Confidence 47999999999999999999843 122332333 5544432 23333 3479
Q ss_pred EecCCCCCCCCChhhHHHHHHHHHHHhhcc
Q 023887 238 ADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267 (276)
Q Consensus 238 iDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ 267 (276)
+||||+....-.....+.+.+++..+....
T Consensus 52 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d 81 (116)
T PF01926_consen 52 VDTPGINDGESQDNDGKEIRKFLEQISKSD 81 (116)
T ss_dssp EESSSCSSSSHHHHHHHHHHHHHHHHCTES
T ss_pred EeCCCCcccchhhHHHHHHHHHHHHHHHCC
Confidence 999999443322221234556666663334
No 393
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.04 E-value=5.1e-10 Score=122.65 Aligned_cols=114 Identities=23% Similarity=0.286 Sum_probs=76.5
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCC-------
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR------- 218 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~------- 218 (276)
...++++++.+ +|+.++|+|+||+|||||+++|+|.. +|++|+|.++|. ++-++..+..
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~------------~~~~G~i~~~g~-iayv~Q~~~l~~~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL------------EPSEGKIKHSGR-ISFSPQTSWIMPGTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCE-EEEEeCCCccCCccHHH
Confidence 34678888887 89999999999999999999999965 899999988762 2222211100
Q ss_pred ----CCce--------------eeeEEEEe-------------c----------------CCCcEEEecCCCCCCCCChh
Q 023887 219 ----GKHT--------------TRHVSLLP-------------L----------------SGGGYLADTPGFNQPSLLKV 251 (276)
Q Consensus 219 ----gk~t--------------t~~~~~~~-------------~----------------~~~~~iiDtPg~~~~~l~~~ 251 (276)
|... ...+..++ + ++..+|+|+|.. ++|..
T Consensus 506 NI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~s---aLD~~ 582 (1490)
T TIGR01271 506 NIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFT---HLDVV 582 (1490)
T ss_pred HHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc---cCCHH
Confidence 0000 00000000 0 112289999999 99998
Q ss_pred hHHHHHH-HHHHHhhcc-eEEEeeeCC
Q 023887 252 TKQSLAQ-TFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 252 ~~~~l~~-~f~ei~~~~-ii~~~H~~~ 276 (276)
..+.+.+ .+.++.+.. +|++||+++
T Consensus 583 ~~~~i~~~~l~~~~~~~tvilvtH~~~ 609 (1490)
T TIGR01271 583 TEKEIFESCLCKLMSNKTRILVTSKLE 609 (1490)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCChH
Confidence 8888876 466654422 999999863
No 394
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.03 E-value=4.8e-10 Score=106.09 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=93.8
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeee
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~ 225 (276)
...++++++.+ +|+++++||.||+|||-..+.+++.+.. +--..-+|+|.|+|.++-..++.. +.+-.-..
T Consensus 23 ~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~-------~~~~~~sg~i~f~G~dll~~se~~-lr~iRG~~ 94 (534)
T COG4172 23 VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS-------PAAAHPSGSILFDGEDLLAASERQ-LRGVRGNK 94 (534)
T ss_pred eEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCC-------CcccCccceeEEcChhhhcCCHHH-Hhhhcccc
Confidence 45688888888 8999999999999999999999997721 111234689999999988777543 22233367
Q ss_pred EEEEecCCCc----------------------------------------------------------------------
Q 023887 226 VSLLPLSGGG---------------------------------------------------------------------- 235 (276)
Q Consensus 226 ~~~~~~~~~~---------------------------------------------------------------------- 235 (276)
++|++|++-.
T Consensus 95 I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan 174 (534)
T COG4172 95 IGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN 174 (534)
T ss_pred eEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcC
Confidence 8899887522
Q ss_pred ----EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 ----YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ----~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|.|||+- .||-..+.++.+++.++... | ++++|||++
T Consensus 175 ~P~lLIADEPTT---ALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~ 219 (534)
T COG4172 175 EPDLLIADEPTT---ALDVTVQAQILDLLKELQAELGMAILFITHDLG 219 (534)
T ss_pred CCCeEeecCCcc---hhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH
Confidence 69999999 89877788999999999975 5 999999974
No 395
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=4.3e-10 Score=107.32 Aligned_cols=100 Identities=30% Similarity=0.415 Sum_probs=63.6
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec--------cccccc-------------------
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE--------DQRVGE------------------- 211 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~--------g~~~~~------------------- 211 (276)
..+++||||||||||||+.+|.|.+ +|..|+..-+ .+..++
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl------------~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlp 680 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKL------------DPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLP 680 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCC------------CCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCC
Confidence 4789999999999999999999987 8999885311 111100
Q ss_pred ---cccc---cCCCCceeeeEEEEecCC----------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcceE
Q 023887 212 ---VSTK---SGRGKHTTRHVSLLPLSG----------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLL 269 (276)
Q Consensus 212 ---vs~~---~g~gk~tt~~~~~~~~~~----------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii 269 (276)
.... .|...|.. .+.+..+++ ..+|+|+|+. .||..+.+.|.+.+.++.- |+|
T Consensus 681 yq~ARK~LG~fGL~sHAH-TikikdLSGGQKaRValaeLal~~PDvlILDEPTN---NLDIESIDALaEAIney~G-gVi 755 (807)
T KOG0066|consen 681 YQEARKQLGTFGLASHAH-TIKIKDLSGGQKARVALAELALGGPDVLILDEPTN---NLDIESIDALAEAINEYNG-GVI 755 (807)
T ss_pred hHHHHHHhhhhhhhhccc-eEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCC---CcchhhHHHHHHHHHhccC-cEE
Confidence 0000 11111111 122333322 3389999999 8887777777777666532 399
Q ss_pred EEeeeC
Q 023887 270 YMIHML 275 (276)
Q Consensus 270 ~~~H~~ 275 (276)
++|||-
T Consensus 756 ~VsHDe 761 (807)
T KOG0066|consen 756 MVSHDE 761 (807)
T ss_pred EEeccc
Confidence 999983
No 396
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.00 E-value=1.8e-09 Score=93.72 Aligned_cols=79 Identities=28% Similarity=0.382 Sum_probs=59.1
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEE
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~ii 238 (276)
+.-++|+|.||||||||||+|.+.. .+...|..+| .|+.+-++...++..++
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k------------------------~LArtSktPG----rTq~iNff~~~~~~~lV 75 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQK------------------------NLARTSKTPG----RTQLINFFEVDDELRLV 75 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCc------------------------ceeecCCCCC----ccceeEEEEecCcEEEE
Confidence 4569999999999999999999943 4566777777 88999999998889999
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhh
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCA 265 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~ 265 (276)
|-||++--......++...+.+.+.-+
T Consensus 76 DlPGYGyAkv~k~~~e~w~~~i~~YL~ 102 (200)
T COG0218 76 DLPGYGYAKVPKEVKEKWKKLIEEYLE 102 (200)
T ss_pred eCCCcccccCCHHHHHHHHHHHHHHHh
Confidence 999994333444344444444444443
No 397
>PLN03232 ABC transporter C family member; Provisional
Probab=98.99 E-value=8.9e-10 Score=120.81 Aligned_cols=56 Identities=27% Similarity=0.269 Sum_probs=46.4
Q ss_pred cCceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccce
Q 023887 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK 202 (276)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i 202 (276)
+.++.+.++|.. ...++++++.+ +|+.++|+|+||+|||||+++|+|.. +|.+|.+
T Consensus 615 I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~------------~~~~G~i 674 (1495)
T PLN03232 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL------------SHAETSS 674 (1495)
T ss_pred EEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------cccCCCE
Confidence 445677788863 45799999988 89999999999999999999999965 7877754
No 398
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.99 E-value=1.1e-10 Score=94.49 Aligned_cols=63 Identities=25% Similarity=0.475 Sum_probs=50.9
Q ss_pred HHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEec
Q 023887 153 LLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL 231 (276)
Q Consensus 153 l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~ 231 (276)
+++.+ +|++++|+|+||+|||||+++|.|.. +|++|+|.+++.++...... .....++++++
T Consensus 4 v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~------------~~~~G~i~~~~~~~~~~~~~-----~~~~~i~~~~~ 66 (137)
T PF00005_consen 4 VSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL------------PPDSGSILINGKDISDIDIE-----ELRRRIGYVPQ 66 (137)
T ss_dssp EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS------------HESEEEEEETTEEGTTSHHH-----HHHHTEEEEES
T ss_pred eEEEEcCCCEEEEEccCCCccccceeeecccc------------cccccccccccccccccccc-----ccccccccccc
Confidence 34445 79999999999999999999999965 89999999999988773322 15567888887
Q ss_pred C
Q 023887 232 S 232 (276)
Q Consensus 232 ~ 232 (276)
.
T Consensus 67 ~ 67 (137)
T PF00005_consen 67 D 67 (137)
T ss_dssp S
T ss_pred c
Confidence 5
No 399
>PLN03130 ABC transporter C family member; Provisional
Probab=98.96 E-value=1.2e-09 Score=120.46 Aligned_cols=59 Identities=25% Similarity=0.289 Sum_probs=49.0
Q ss_pred cCceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccc-cceeec
Q 023887 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL-GSKWFE 205 (276)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~-G~i~~~ 205 (276)
+.++.+.++|.. ...++++++.+ +|+.++|+|++|+|||||+++|+|.. +|.+ |+|.+.
T Consensus 615 I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~------------~~~~GG~I~l~ 678 (1622)
T PLN03130 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL------------PPRSDASVVIR 678 (1622)
T ss_pred eEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh------------ccCCCceEEEc
Confidence 445677888863 35689999888 89999999999999999999999955 8888 787653
No 400
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=98.95 E-value=2e-09 Score=77.56 Aligned_cols=67 Identities=24% Similarity=0.348 Sum_probs=51.5
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeeccccccccc
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILD 71 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r 71 (276)
|.+.|... .+.+ .+..+ ++..+.|.++|++++....|+|||||.++..+ ++.++|++++||+|.|.|
T Consensus 1 ~~grVv~~-~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~VGD~V~~~~~~--~~~~~I~~vl~R~s~l~R 68 (68)
T cd04466 1 MEGLIIKA-IGGFYYVETE-DGKIYECRLRGKFRKDKNPPAVGDRVEFEPED--DGEGVIEEILPRKNLLIR 68 (68)
T ss_pred CCEEEEEE-ECCEEEEEeC-CCeEEEEEEccccccCCCCCCCCcEEEEEECC--CCcEEEEEEeccceEEEC
Confidence 45667766 4555 55543 46789999999998656779999999998633 456899999999999875
No 401
>PLN03140 ABC transporter G family member; Provisional
Probab=98.94 E-value=2.1e-09 Score=117.28 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=44.1
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc---ccceeeccccc
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRV 209 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~~ 209 (276)
...+++++..+ +|+.++|+|+||+|||||+|+|+|.. +|+ +|+|.++|.++
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l------------~~~~~~~G~I~~nG~~~ 232 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL------------DPSLKVSGEITYNGYRL 232 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC------------CCCCcceeEEEECCEec
Confidence 45688888877 89999999999999999999999976 676 89999988654
No 402
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.92 E-value=1.8e-09 Score=113.91 Aligned_cols=116 Identities=21% Similarity=0.264 Sum_probs=81.8
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc------------
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS------------ 213 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs------------ 213 (276)
.+.|++++-.+ ||..+||+|.||+|||||||.|+|.... -..+|+|.++|.+....+
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~----------G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~D 873 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG----------GYIEGDILISGFPKDQETFARVSGYVEQQD 873 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc----------ceEEeEEEECCeeCchhhhccccceeeccc
Confidence 34556555555 8999999999999999999999996522 456788999987765200
Q ss_pred --------------------------------------------------cccCCC------CceeeeEEEEecCCCcEE
Q 023887 214 --------------------------------------------------TKSGRG------KHTTRHVSLLPLSGGGYL 237 (276)
Q Consensus 214 --------------------------------------------------~~~g~g------k~tt~~~~~~~~~~~~~i 237 (276)
..+|.| |..|-.+.++.-+.-.++
T Consensus 874 iH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 874 IHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred ccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 001111 111222222221123379
Q ss_pred EecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 238 ADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 238 iDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+|||+. |||..+...+.+.++.+...| |+.+.|..
T Consensus 954 LDEPTS---GLDsqaA~~i~~~lrkla~tGqtIlCTIHQP 990 (1391)
T KOG0065|consen 954 LDEPTS---GLDSQAAAIVMRFLRKLADTGQTILCTIHQP 990 (1391)
T ss_pred ecCCCC---CccHHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 999999 999999999999999999998 99999975
No 403
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.92 E-value=1.7e-09 Score=92.03 Aligned_cols=45 Identities=29% Similarity=0.424 Sum_probs=39.2
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
.++++++.+ .|+++++-|+||+|||||+++|.+ -|.|++|.|++.
T Consensus 26 V~~~vslsV~aGECvvL~G~SG~GKStllr~LYa------------NY~~d~G~I~v~ 71 (235)
T COG4778 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYA------------NYLPDEGQILVR 71 (235)
T ss_pred eeeceeEEecCccEEEeeCCCCCcHHHHHHHHHh------------ccCCCCceEEEE
Confidence 466777776 799999999999999999999999 469999999864
No 404
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.91 E-value=8.3e-10 Score=107.41 Aligned_cols=111 Identities=25% Similarity=0.298 Sum_probs=71.7
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc--------ccc----------
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED--------QRV---------- 209 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g--------~~~---------- 209 (276)
...++++-+ .+.++++|||||+||||||+++.|.. .|..|.+..+. +..
T Consensus 405 iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl------------~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~ 472 (614)
T KOG0927|consen 405 IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL------------QPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSS 472 (614)
T ss_pred hhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc------------ccccccccccccccchhhhhhhHhhcCcchhH
Confidence 445555555 78999999999999999999999987 78888874221 100
Q ss_pred --------------cccc---cccCC-CCceeeeEEEEec--------------CCCcEEEecCCCCCCCCChhhHHHHH
Q 023887 210 --------------GEVS---TKSGR-GKHTTRHVSLLPL--------------SGGGYLADTPGFNQPSLLKVTKQSLA 257 (276)
Q Consensus 210 --------------~~vs---~~~g~-gk~tt~~~~~~~~--------------~~~~~iiDtPg~~~~~l~~~~~~~l~ 257 (276)
..++ .+-|. |++.+..++.++- .+.++++|||+. ++|-.+.+.+.
T Consensus 473 le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtn---hLDi~tid~la 549 (614)
T KOG0927|consen 473 LEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTN---HLDIETIDALA 549 (614)
T ss_pred HHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCc---CCCchhHHHHH
Confidence 0000 01110 1111111111111 124489999999 99988888888
Q ss_pred HHHHHHhhcceEEEeeeC
Q 023887 258 QTFPEVCAVGLLYMIHML 275 (276)
Q Consensus 258 ~~f~ei~~~~ii~~~H~~ 275 (276)
+++.|+. -|++++|||+
T Consensus 550 eaiNe~~-Ggvv~vSHDf 566 (614)
T KOG0927|consen 550 EAINEFP-GGVVLVSHDF 566 (614)
T ss_pred HHHhccC-Cceeeeechh
Confidence 8887754 2499999986
No 405
>PTZ00243 ABC transporter; Provisional
Probab=98.91 E-value=2.5e-09 Score=117.66 Aligned_cols=49 Identities=37% Similarity=0.528 Sum_probs=42.0
Q ss_pred CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 145 ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 145 ~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
.+...++++++.+ +|+.++|+|+||+|||||+++|+|.. +|++|+|.+.
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~------------~~~~G~i~~~ 720 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF------------EISEGRVWAE 720 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEEC
Confidence 3445688888887 89999999999999999999999966 8888988764
No 406
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.90 E-value=6.8e-09 Score=91.06 Aligned_cols=41 Identities=10% Similarity=-0.037 Sum_probs=35.8
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
+..+++|||.. ++|....+.+.+.+.++++.+ ++++||+++
T Consensus 152 ~~~lllDEp~~---~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~ 194 (213)
T cd03279 152 LEALFIDEGFG---TLDPEALEAVATALELIRTENRMVGVISHVEE 194 (213)
T ss_pred CCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEECchH
Confidence 35699999999 999999999999999998755 999999863
No 407
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.83 E-value=7.4e-09 Score=91.83 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=35.3
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||.. ++|......+.+.+.++.+.| +|++||++
T Consensus 159 ~llllDEPt~---gLD~~~~~~l~~~l~~~~~~g~tii~itH~~ 199 (226)
T cd03270 159 VLYVLDEPSI---GLHPRDNDRLIETLKRLRDLGNTVLVVEHDE 199 (226)
T ss_pred CEEEEeCCcc---CCCHHHHHHHHHHHHHHHhCCCEEEEEEeCH
Confidence 4799999999 999999999999999998766 99999986
No 408
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.81 E-value=7.3e-09 Score=94.56 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=62.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc------------cCCCCceeeeE-
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK------------SGRGKHTTRHV- 226 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~------------~g~gk~tt~~~- 226 (276)
+.++++|+||+|||||+++|+|.. .|.+|++.++|+++..+... ...+..++..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~------------~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL------------STGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc------------CCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc
Confidence 578999999999999999999966 89999999999988643211 01111111000
Q ss_pred ---------EEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 227 ---------SLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 227 ---------~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
....+++..+++|||+. .+.+...+..+. .| +++++|+.
T Consensus 180 ~~k~~~~~~~i~~~~P~villDE~~~---------~e~~~~l~~~~~-~G~~vI~ttH~~ 229 (270)
T TIGR02858 180 CPKAEGMMMLIRSMSPDVIVVDEIGR---------EEDVEALLEALH-AGVSIIATAHGR 229 (270)
T ss_pred chHHHHHHHHHHhCCCCEEEEeCCCc---------HHHHHHHHHHHh-CCCEEEEEechh
Confidence 00112345689999874 234555555554 45 99999963
No 409
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.79 E-value=3.1e-08 Score=89.39 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=23.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..-+++|+|++|||||||+|+|.|..
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~ 55 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGER 55 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999999954
No 410
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.78 E-value=2.5e-08 Score=95.92 Aligned_cols=84 Identities=30% Similarity=0.385 Sum_probs=66.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCc--
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG-- 235 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~-- 235 (276)
.|-.++++|+||||||||+|+|++..+ .-++.-+| |||.+-...+.-++
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~-------------------------AIVTdI~G----TTRDviee~i~i~G~p 266 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDR-------------------------AIVTDIAG----TTRDVIEEDINLNGIP 266 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCc-------------------------eEecCCCC----CccceEEEEEEECCEE
Confidence 478999999999999999999999653 33555567 99888766554333
Q ss_pred -EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEE
Q 023887 236 -YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYM 271 (276)
Q Consensus 236 -~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~ 271 (276)
.|+||.|+|+. -|.+++..+.+....+.+.. ++++
T Consensus 267 v~l~DTAGiRet-~d~VE~iGIeRs~~~i~~ADlvL~v 303 (454)
T COG0486 267 VRLVDTAGIRET-DDVVERIGIERAKKAIEEADLVLFV 303 (454)
T ss_pred EEEEecCCcccC-ccHHHHHHHHHHHHHHHhCCEEEEE
Confidence 69999999844 47788899999999999887 5554
No 411
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.77 E-value=3.2e-08 Score=86.48 Aligned_cols=41 Identities=24% Similarity=0.202 Sum_probs=35.5
Q ss_pred CCCcEEEecCCCCCCCCChhhHH-HHHHHHHHHhhc-c--eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQ-SLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~-~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+..+++|||.. ++|....+ .+.+.+.++.+. + ++++||++
T Consensus 139 ~p~illlDEP~~---~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~ 183 (204)
T cd03240 139 NCGILALDEPTT---NLDEENIEESLAEIIEERKSQKNFQLIVITHDE 183 (204)
T ss_pred CCCEEEEcCCcc---ccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH
Confidence 456799999999 99998888 899999999875 4 99999985
No 412
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.75 E-value=3.3e-08 Score=83.23 Aligned_cols=56 Identities=36% Similarity=0.477 Sum_probs=35.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE--EEEecC-CCcEE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV--SLLPLS-GGGYL 237 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~--~~~~~~-~~~~i 237 (276)
.++++|.||||||||+|+|.|.. .. ++..+| +|... +.+... ....+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-----------------------~~---v~n~pG----~Tv~~~~g~~~~~~~~~~l 51 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-----------------------QK---VGNWPG----TTVEKKEGIFKLGDQQVEL 51 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-----------------------EE---EEESTT----SSSEEEEEEEEETTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-----------------------ce---ecCCCC----CCeeeeeEEEEecCceEEE
Confidence 58999999999999999999954 23 344456 44333 333332 35589
Q ss_pred EecCCCCCC
Q 023887 238 ADTPGFNQP 246 (276)
Q Consensus 238 iDtPg~~~~ 246 (276)
+|+||.-.+
T Consensus 52 vDlPG~ysl 60 (156)
T PF02421_consen 52 VDLPGIYSL 60 (156)
T ss_dssp EE----SSS
T ss_pred EECCCcccC
Confidence 999997443
No 413
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=3e-08 Score=95.66 Aligned_cols=81 Identities=28% Similarity=0.281 Sum_probs=67.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCC---C
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG---G 234 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~---~ 234 (276)
.|-.++|+|+||||||||+|+|.... ..-+|+.+| ||+..-...+.. .
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~d-------------------------rsIVSpv~G----TTRDaiea~v~~~G~~ 317 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSRED-------------------------RSIVSPVPG----TTRDAIEAQVTVNGVP 317 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCC-------------------------ceEeCCCCC----cchhhheeEeecCCeE
Confidence 57899999999999999999999854 455777777 888776655554 3
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ 267 (276)
.+|.||.|+++..-+.+++..+.+.+..+....
T Consensus 318 v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~ad 350 (531)
T KOG1191|consen 318 VRLSDTAGIREESNDGIEALGIERARKRIERAD 350 (531)
T ss_pred EEEEeccccccccCChhHHHhHHHHHHHHhhcC
Confidence 489999999997788888899999999998877
No 414
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.73 E-value=6e-08 Score=83.73 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++|+|+||||||||+|+|+|..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~ 24 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE 24 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCC
Confidence 68999999999999999999964
No 415
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.72 E-value=2.8e-08 Score=95.33 Aligned_cols=83 Identities=25% Similarity=0.297 Sum_probs=60.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEec---CCCcE
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL---SGGGY 236 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~---~~~~~ 236 (276)
.+++|+|.||||||||+|.|+|.. .+-++..+| +|+...+-.. +....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r-------------------------~AIV~D~pG----vTRDr~y~~~~~~~~~f~ 54 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRR-------------------------IAIVSDTPG----VTRDRIYGDAEWLGREFI 54 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCe-------------------------eeEeecCCC----CccCCccceeEEcCceEE
Confidence 479999999999999999999844 555666777 7765544332 23568
Q ss_pred EEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEE
Q 023887 237 LADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYM 271 (276)
Q Consensus 237 iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~ 271 (276)
++||+|+-...-+.....-..++...+.+.. +|++
T Consensus 55 lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfv 90 (444)
T COG1160 55 LIDTGGLDDGDEDELQELIREQALIAIEEADVILFV 90 (444)
T ss_pred EEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEE
Confidence 9999999544444566666777888887776 5554
No 416
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.72 E-value=1.6e-08 Score=87.98 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=59.3
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccccc----CCCCce---e--eeEEE
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKS----GRGKHT---T--RHVSL 228 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~----g~gk~t---t--~~~~~ 228 (276)
+|++++|+|+||+|||||++++.+... ......+.++...++.+..+......... +.+... . ..+..
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~~---~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~ 104 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAVL---LAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILS 104 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHHH---HHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHH
Confidence 568999999999999999999984210 00001111122222222111111111000 000000 0 00000
Q ss_pred EecCCCcEEEecCCCCCCCCChhhHHHHHH-HHHHHhhcc--eEEEeeeC
Q 023887 229 LPLSGGGYLADTPGFNQPSLLKVTKQSLAQ-TFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 229 ~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~-~f~ei~~~~--ii~~~H~~ 275 (276)
....+..+++|||+. ++|......+.. .+..+.+.+ ++++||+.
T Consensus 105 ~~~~~~llllDEp~~---gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~ 151 (202)
T cd03243 105 LATPRSLVLIDELGR---GTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH 151 (202)
T ss_pred hccCCeEEEEecCCC---CCCHHHHHHHHHHHHHHHHhcCCeEEEECChH
Confidence 011346689999999 999877776644 566666655 89999975
No 417
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.70 E-value=6.3e-08 Score=88.00 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.0
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|++|||||||+|+|.|..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~ 24 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQK 24 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999843
No 418
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.68 E-value=1.3e-07 Score=80.12 Aligned_cols=60 Identities=33% Similarity=0.538 Sum_probs=42.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEE
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~ii 238 (276)
...++++|.+|+|||||+|.|.+.. .....+...+ +|..+.++..+....++
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~------------------------~~~~~~~~~~----~t~~~~~~~~~~~~~li 69 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRK------------------------KLARTSKTPG----RTQLINFFEVNDGFRLV 69 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC------------------------CcccccCCCC----cceEEEEEEeCCcEEEE
Confidence 4579999999999999999999842 1122232233 66666666655677899
Q ss_pred ecCCCCCC
Q 023887 239 DTPGFNQP 246 (276)
Q Consensus 239 DtPg~~~~ 246 (276)
||||+...
T Consensus 70 DtpG~~~~ 77 (179)
T TIGR03598 70 DLPGYGYA 77 (179)
T ss_pred eCCCCccc
Confidence 99998443
No 419
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.67 E-value=3.5e-08 Score=87.71 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=31.7
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeee
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHM 274 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~ 274 (276)
+..+++|||.. ++|....+.+.+.+.++.+.. +++++|.
T Consensus 181 ~~illlDEp~~---~ld~~~~~~~~~~l~~~~~~~~ii~~~h~ 220 (243)
T cd03272 181 APFYLFDEIDA---ALDAQYRTAVANMIKELSDGAQFITTTFR 220 (243)
T ss_pred CCEEEEECCcc---CCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 46799999999 999999999999999986633 5666664
No 420
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.66 E-value=4.2e-08 Score=85.59 Aligned_cols=41 Identities=12% Similarity=-0.077 Sum_probs=32.7
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHH-HHHHHHhhcc--eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLA-QTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~-~~f~ei~~~~--ii~~~H~~ 275 (276)
.+..+++|||+. ++|..+...+. ..+.++.+.+ +|++||++
T Consensus 105 ~p~llllDEp~~---glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~ 148 (199)
T cd03283 105 EPVLFLLDEIFK---GTNSRERQAASAAVLKFLKNKNTIGIISTHDL 148 (199)
T ss_pred CCeEEEEecccC---CCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcH
Confidence 457799999999 89987776664 5678887665 89999986
No 421
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.65 E-value=1.6e-08 Score=96.17 Aligned_cols=121 Identities=20% Similarity=0.265 Sum_probs=82.0
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc-----------
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK----------- 215 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~----------- 215 (276)
..++++++.+ +|..++++|+||+||||++++++|.. ....|..|.|++|.+.+-...++..-+.
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~----~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~ti 472 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ----KGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTI 472 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh----hcccccccCCCCCceeccccchhhccCcccccccCchhH
Confidence 3466677666 79999999999999999999999976 4567889999999986543322211100
Q ss_pred --------------------cCCC---------------Ccee-eeEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHH
Q 023887 216 --------------------SGRG---------------KHTT-RHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQT 259 (276)
Q Consensus 216 --------------------~g~g---------------k~tt-~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~ 259 (276)
.|.+ .+-+ +-..++.-.++.+++|+-+. .+|..+...+..-
T Consensus 473 lehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~A---hLD~~TA~rVArk 549 (593)
T COG2401 473 LEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAA---HLDELTAVRVARK 549 (593)
T ss_pred HHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhh---hcCHHHHHHHHHH
Confidence 0000 0000 00001111123389999999 8999999999999
Q ss_pred HHHHhhc-c--eEEEeeeC
Q 023887 260 FPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 260 f~ei~~~-~--ii~~~H~~ 275 (276)
+.++... + ++++||..
T Consensus 550 iselaRe~giTlivvThrp 568 (593)
T COG2401 550 ISELAREAGITLIVVTHRP 568 (593)
T ss_pred HHHHHHHhCCeEEEEecCH
Confidence 9999864 5 78888853
No 422
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.63 E-value=4.6e-08 Score=86.09 Aligned_cols=40 Identities=13% Similarity=-0.041 Sum_probs=34.9
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.+ ++++||+.
T Consensus 150 p~ililDEPt~---gLD~~~~~~l~~~l~~~~~~~~~iivs~~~ 190 (212)
T cd03274 150 TPLYVMDEIDA---ALDFRNVSIVANYIKERTKNAQFIVISLRN 190 (212)
T ss_pred CCEEEEcCCCc---CCCHHHHHHHHHHHHHHcCCCEEEEEECcH
Confidence 46799999999 999999999999999987655 89999973
No 423
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.63 E-value=2.3e-07 Score=79.05 Aligned_cols=59 Identities=32% Similarity=0.494 Sum_probs=42.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEE
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~ii 238 (276)
...++++|.+|||||||+|.|.+.. .+...+...| +|+.+..+.......++
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~------------------------~~~~~~~~~~----~t~~~~~~~~~~~l~l~ 75 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRK------------------------NLARTSKTPG----RTQLINFFEVNDKLRLV 75 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC------------------------CcccccCCCC----ceeEEEEEecCCeEEEe
Confidence 3579999999999999999999842 1122222233 55666666655678899
Q ss_pred ecCCCCC
Q 023887 239 DTPGFNQ 245 (276)
Q Consensus 239 DtPg~~~ 245 (276)
||||+..
T Consensus 76 DtpG~~~ 82 (196)
T PRK00454 76 DLPGYGY 82 (196)
T ss_pred CCCCCCC
Confidence 9999843
No 424
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.61 E-value=3.2e-08 Score=86.02 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=32.7
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHH-HHHHHHhhcc--eEEEeee
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLA-QTFPEVCAVG--LLYMIHM 274 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~-~~f~ei~~~~--ii~~~H~ 274 (276)
.+..+++|||+. ++|......+. ..+.++.+.+ ++++||+
T Consensus 108 ~p~llllDEp~~---glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~ 150 (200)
T cd03280 108 PDSLVLLDELGS---GTDPVEGAALAIAILEELLERGALVIATTHY 150 (200)
T ss_pred CCcEEEEcCCCC---CCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence 456799999999 99988888775 5678877665 8999997
No 425
>PRK00089 era GTPase Era; Reviewed
Probab=98.59 E-value=2.7e-07 Score=84.43 Aligned_cols=24 Identities=46% Similarity=0.594 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..++++|++|||||||+|.|.|..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~ 29 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQK 29 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCc
Confidence 468999999999999999999843
No 426
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=98.57 E-value=1.9e-07 Score=66.83 Aligned_cols=59 Identities=24% Similarity=0.286 Sum_probs=44.0
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEe
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (276)
|.+.|.++-.|.| .+..+ +|..+.|++||+|++.+..++|||+|.++....+++++.|.
T Consensus 3 ~~G~Vi~~~~g~~~~V~~~-~g~~~~c~~rGklr~~~~~~~vGD~V~~~~~~~~~~~g~I~ 62 (64)
T cd04451 3 MEGVVTEALPNAMFRVELE-NGHEVLAHISGKMRMNYIRILPGDRVKVELSPYDLTKGRIV 62 (64)
T ss_pred EEEEEEEEeCCCEEEEEeC-CCCEEEEEECceeecCCcccCCCCEEEEEEeecCCCEEEEE
Confidence 6788998833466 66554 78899999999998667789999999999542234456553
No 427
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.56 E-value=1.4e-07 Score=82.70 Aligned_cols=38 Identities=24% Similarity=0.464 Sum_probs=33.5
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+++|+-++ .+|-+...+|.+.|++=.++ | |++.||.++
T Consensus 169 LLLDEVTV---DLDVlARadLLeFlkeEce~RgatIVYATHIFD 209 (291)
T KOG2355|consen 169 LLLDEVTV---DLDVLARADLLEFLKEECEQRGATIVYATHIFD 209 (291)
T ss_pred EEeeeeEe---ehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc
Confidence 79999999 99988999999999988875 5 999999764
No 428
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.56 E-value=2.7e-07 Score=75.24 Aligned_cols=57 Identities=33% Similarity=0.473 Sum_probs=37.8
Q ss_pred EEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEEecC
Q 023887 162 TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241 (276)
Q Consensus 162 v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtP 241 (276)
++++|.+|||||||+|.|.+.. ..++. +...+ +|.....+.......++|||
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~----------~~~~~--------------~~~~~----~t~~~~~~~~~~~~~~~D~~ 53 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRK----------KLART--------------SKTPG----KTQLINFFNVNDKFRLVDLP 53 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC----------ceeee--------------cCCCC----cceeEEEEEccCeEEEecCC
Confidence 6899999999999999999522 11111 11122 34444555555677899999
Q ss_pred CCCCC
Q 023887 242 GFNQP 246 (276)
Q Consensus 242 g~~~~ 246 (276)
|+...
T Consensus 54 g~~~~ 58 (170)
T cd01876 54 GYGYA 58 (170)
T ss_pred Ccccc
Confidence 98433
No 429
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.53 E-value=3.8e-07 Score=78.98 Aligned_cols=61 Identities=33% Similarity=0.318 Sum_probs=40.1
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEec--CCCcEEE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL--SGGGYLA 238 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~--~~~~~ii 238 (276)
.++++|+||||||||+|+|.|.. .+.+|.+..+.. ++|.....+.. .....++
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~------------~~~~~~~~~~~~-------------~~t~~~~~~~~~~~~~l~l~ 57 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVG------------HEEEGAAPTGVV-------------ETTMKRTPYPHPKFPNVTLW 57 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccC------------CCCCCccccCcc-------------ccccCceeeecCCCCCceEE
Confidence 58999999999999999999955 344444433211 13333333332 2367899
Q ss_pred ecCCCCCC
Q 023887 239 DTPGFNQP 246 (276)
Q Consensus 239 DtPg~~~~ 246 (276)
||||+...
T Consensus 58 DtpG~~~~ 65 (197)
T cd04104 58 DLPGIGST 65 (197)
T ss_pred eCCCCCcc
Confidence 99999543
No 430
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.52 E-value=5.2e-08 Score=88.54 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=35.6
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||.. ++|..+.+.+.+.+.++.+.| +|+++|++
T Consensus 192 ~lllLDEPts---gLD~~~~~~l~~~L~~l~~~g~tvIiitH~~ 232 (261)
T cd03271 192 TLYILDEPTT---GLHFHDVKKLLEVLQRLVDKGNTVVVIEHNL 232 (261)
T ss_pred cEEEEECCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 5699999999 999999999999999998776 99999986
No 431
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.51 E-value=3.8e-07 Score=83.87 Aligned_cols=60 Identities=35% Similarity=0.500 Sum_probs=44.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE--EEecC-CCcE
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS--LLPLS-GGGY 236 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~--~~~~~-~~~~ 236 (276)
-.++++|+||||||||.|-+.| .+++.+|.+. |||++-. .+.-+ -+..
T Consensus 73 L~vavIG~PNvGKStLtN~mig-------------------------~kv~~vS~K~----~TTr~~ilgi~ts~eTQlv 123 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIG-------------------------QKVSAVSRKV----HTTRHRILGIITSGETQLV 123 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhC-------------------------Cccccccccc----cceeeeeeEEEecCceEEE
Confidence 4699999999999999999998 4577777665 4665433 33322 2568
Q ss_pred EEecCCCCCCCC
Q 023887 237 LADTPGFNQPSL 248 (276)
Q Consensus 237 iiDtPg~~~~~l 248 (276)
++||||...++.
T Consensus 124 f~DTPGlvs~~~ 135 (379)
T KOG1423|consen 124 FYDTPGLVSKKM 135 (379)
T ss_pred EecCCcccccch
Confidence 999999976664
No 432
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.50 E-value=1e-06 Score=71.39 Aligned_cols=25 Identities=52% Similarity=0.659 Sum_probs=22.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
|.+++++|++|+|||||+|+|.+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~ 25 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRD 25 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCc
Confidence 5689999999999999999999853
No 433
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=4.9e-08 Score=94.80 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=38.0
Q ss_pred eeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 138 EPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+..+|+....+..-+..+ .|.+++++|+||+||||||++|+...
T Consensus 84 ~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~ 130 (582)
T KOG0062|consen 84 DNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQ 130 (582)
T ss_pred eeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcC
Confidence 45677788777777666665 89999999999999999999999843
No 434
>PRK00276 infA translation initiation factor IF-1; Validated
Probab=98.50 E-value=3.5e-07 Score=67.18 Aligned_cols=59 Identities=27% Similarity=0.305 Sum_probs=45.4
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEe
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (276)
|.+.|.+.-+|.+ .|..+ +|..+.|+++|+|++.+..|.|||+|.+++...++.+|.|.
T Consensus 9 ~~G~Vi~~~~~~~y~V~~~-~g~~~~c~~~Gklr~~~i~i~vGD~V~ve~~~~~~~~g~Iv 68 (72)
T PRK00276 9 MEGTVVEALPNAMFRVELE-NGHEVLAHISGKMRKNYIRILPGDKVTVELSPYDLTKGRIT 68 (72)
T ss_pred EEEEEEEEcCCCEEEEEeC-CCCEEEEEEccceeeCCcccCCCCEEEEEEcccCCCeEEEE
Confidence 5688888856745 77544 78899999999999777889999999999543334566654
No 435
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.49 E-value=6.1e-07 Score=80.55 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=33.4
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
..+++|||.. ++|....+.+.+.+.++.+.. +|++||+.
T Consensus 190 ~illlDEPt~---~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~ 229 (251)
T cd03273 190 PMYILDEVDA---ALDLSHTQNIGRMIKTHFKGSQFIVVSLKE 229 (251)
T ss_pred CEEEEeCCCc---CCCHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 5689999999 999999999999999986532 99999973
No 436
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.48 E-value=2.9e-07 Score=80.80 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.2
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|++|+||||++|.|+|..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~ 24 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKE 24 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58899999999999999999965
No 437
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.48 E-value=1.4e-07 Score=82.91 Aligned_cols=115 Identities=24% Similarity=0.332 Sum_probs=81.8
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
.++.++..+ .|++.++||.||+|||-+-+++.|... ||| ..+.-...++..++-.++++ .+.|-.-..++
T Consensus 22 ~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k-------dnW-~vTADR~Rf~~idLL~L~Pr-~RRk~ig~~is 92 (330)
T COG4170 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK-------DNW-RVTADRMRFDDIDLLRLSPR-ERRKLVGHNVS 92 (330)
T ss_pred eeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc-------cce-EEEhhhcccccchhhcCChH-Hhhhhhccchh
Confidence 456666666 899999999999999999999999652 222 33444444555544444433 12233334555
Q ss_pred EEecCCC-------------------------------------------------------------------------
Q 023887 228 LLPLSGG------------------------------------------------------------------------- 234 (276)
Q Consensus 228 ~~~~~~~------------------------------------------------------------------------- 234 (276)
|++|++.
T Consensus 93 MIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A 172 (330)
T COG4170 93 MIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIA 172 (330)
T ss_pred hhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehh
Confidence 5555432
Q ss_pred ------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 ------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 ------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
++|.|+|+. ++++.++.++..++..+.+. + |++++||+
T Consensus 173 ~AnqPrLLIADEPTN---~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl 219 (330)
T COG4170 173 LANQPRLLIADEPTN---SMEPTTQAQIFRLLSRLNQNSNTTILLISHDL 219 (330)
T ss_pred hccCCceEeccCCCc---ccCccHHHHHHHHHHHhhccCCceEEEEcccH
Confidence 269999999 89999999999999999875 4 99999996
No 438
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.46 E-value=3.5e-07 Score=98.38 Aligned_cols=47 Identities=30% Similarity=0.437 Sum_probs=42.1
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (276)
.++++++.+ +|+.+|++|+.|+||||||.+|+|+. +..+|++.++|.
T Consensus 536 tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm------------~~~sG~v~v~gs 583 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEM------------PKLSGSVAVNGS 583 (1381)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCc------------ccccceEEEcCe
Confidence 688888887 89999999999999999999999988 788888877664
No 439
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.45 E-value=9.4e-07 Score=79.28 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=35.0
Q ss_pred CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+++|||.. ++|......+.+.+.++.+.| +|++||+.
T Consensus 178 p~~lllDEPt~---~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~ 219 (247)
T cd03275 178 APFFVLDEVDA---ALDNTNVGKVASYIREQAGPNFQFIVISLKE 219 (247)
T ss_pred CCEEEEecccc---cCCHHHHHHHHHHHHHhccCCcEEEEEECCH
Confidence 35689999999 999999999999999998755 99999984
No 440
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.45 E-value=6.5e-07 Score=86.24 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=31.0
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc---eEEEeeeC
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG---LLYMIHML 275 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~---ii~~~H~~ 275 (276)
|++|+|.. .||-...-...+.++.+.+.. .+++-||+
T Consensus 477 YllDEPSA---~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi 516 (591)
T COG1245 477 YLLDEPSA---YLDVEQRIIVAKVIRRFIENNEKTALVVDHDI 516 (591)
T ss_pred EEecCchh---hccHHHHHHHHHHHHHHHhhcCceEEEEecce
Confidence 89999999 898777777788888888753 89999986
No 441
>CHL00010 infA translation initiation factor 1
Probab=98.44 E-value=5.9e-07 Score=67.03 Aligned_cols=59 Identities=25% Similarity=0.326 Sum_probs=45.3
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEe
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (276)
|.+.|.+.-++.+ .|..+ +|..+.|+++|+|++.+..|+|||+|.+++...++.+|.|.
T Consensus 9 ~~G~Vik~lg~~~y~V~~~-~g~~~~c~~rGklr~~~i~~~vGD~V~ve~~~~~~~~g~Ii 68 (78)
T CHL00010 9 MEGLVTESLPNGMFRVRLD-NGCQVLGYISGKIRRNSIRILPGDRVKVELSPYDLTKGRII 68 (78)
T ss_pred EEEEEEEEcCCCEEEEEeC-CCCEEEEEeccceecCCcccCCCCEEEEEEcccCCCeEEEE
Confidence 5788888854454 77443 78899999999999877889999999999644345566654
No 442
>PRK15494 era GTPase Era; Provisional
Probab=98.42 E-value=7.4e-07 Score=83.85 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|.+|||||||+|.|.|..
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 89999999999999999999843
No 443
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.42 E-value=1.2e-06 Score=81.36 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=22.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++++|.+|+||||++|.|+|..
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999954
No 444
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.41 E-value=1.7e-06 Score=86.99 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=45.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEe--cCCCcEE
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP--LSGGGYL 237 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~--~~~~~~i 237 (276)
.+++|+|++|+||||++|.|+|... ..++ ....+||+...... -.....+
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekv-------------------------f~vs---s~~~~TTr~~ei~~~idG~~L~V 170 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVK-------------------------FSTD---AFGMGTTSVQEIEGLVQGVKIRV 170 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhcccc-------------------------cccc---CCCCCceEEEEEEEEECCceEEE
Confidence 3699999999999999999999541 1111 11223554322221 1235689
Q ss_pred EecCCCCCCCCChhhHHHHHHHHH
Q 023887 238 ADTPGFNQPSLLKVTKQSLAQTFP 261 (276)
Q Consensus 238 iDtPg~~~~~l~~~~~~~l~~~f~ 261 (276)
+||||+.....+....+++...+.
T Consensus 171 IDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 171 IDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred EECCCCCccccchHHHHHHHHHHH
Confidence 999999776655433344444443
No 445
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.41 E-value=6.1e-07 Score=79.05 Aligned_cols=40 Identities=15% Similarity=0.028 Sum_probs=29.3
Q ss_pred CCcEEEecCCCCCCCCChhhHHH-HHHHHHHHhhc---c--eEEEeeeC
Q 023887 233 GGGYLADTPGFNQPSLLKVTKQS-LAQTFPEVCAV---G--LLYMIHML 275 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~~~~~~~-l~~~f~ei~~~---~--ii~~~H~~ 275 (276)
+..+++|||+- ++|..+... +.+.+..+.+. + ++++||+.
T Consensus 109 ~slvllDE~~~---gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 109 RSLVLIDEFGK---GTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred CcEEEeccccC---CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 45689999999 888765444 35677777653 2 89999985
No 446
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.41 E-value=8.8e-07 Score=74.46 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=34.5
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+..+++|||+- ++|..+...+.+.+.+....+ ++++||+.
T Consensus 99 ~~~llllDEp~~---gld~~~~~~l~~~l~~~~~~~~~vii~TH~~ 141 (162)
T cd03227 99 PRPLYILDEIDR---GLDPRDGQALAEAILEHLVKGAQVIVITHLP 141 (162)
T ss_pred CCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 346799999999 999988899999888876554 89999975
No 447
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.39 E-value=2.1e-07 Score=81.61 Aligned_cols=120 Identities=11% Similarity=0.110 Sum_probs=61.8
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCc-------
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH------- 221 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~------- 221 (276)
.+++++.. .|+.++|+|+||+||||+++.+.+.... +...-+.+....++.+...-...+.......+.
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l---a~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e 95 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM---AQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASE 95 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH---HHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHH
Confidence 34444444 5689999999999999999998732100 000011122333332211111100000000000
Q ss_pred e--eeeEEEEecCCCcEEEecCCCCCCCCChhhHHHH-HHHHHHHhhcc--eEEEeeeC
Q 023887 222 T--TRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSL-AQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 222 t--t~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l-~~~f~ei~~~~--ii~~~H~~ 275 (276)
. ...+.-....+..+++|||+- +.+..+...+ .+.+..+.+.+ ++++||+.
T Consensus 96 ~~~~~~il~~~~~~~lvllDE~~~---gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 96 MSETAYILDYADGDSLVLIDELGR---GTSSADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred HHHHHHHHHhcCCCcEEEeccccC---CCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 0 000000112346789999999 8877665544 44566776666 99999975
No 448
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.38 E-value=1.1e-06 Score=76.02 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=33.7
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeee
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHM 274 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~ 274 (276)
+.|++|+|-. +|.+..+-++...+.++.+.| +|++||.
T Consensus 148 GiYiLDEPEa---~LSp~RQlella~l~~la~sGaQ~IiATHS 187 (233)
T COG3910 148 GIYILDEPEA---ALSPSRQLELLAILRDLADSGAQIIIATHS 187 (233)
T ss_pred ceEEecCccc---cCCHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 3389999999 899888888999999999987 9999995
No 449
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.36 E-value=2.9e-06 Score=68.84 Aligned_cols=24 Identities=46% Similarity=0.594 Sum_probs=21.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++++|++|+|||||+|.+.+..
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~ 27 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQK 27 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999854
No 450
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.36 E-value=7.2e-07 Score=89.02 Aligned_cols=122 Identities=21% Similarity=0.144 Sum_probs=77.5
Q ss_pred eeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec-ccccccccc
Q 023887 138 EPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE-DQRVGEVST 214 (276)
Q Consensus 138 ~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~-g~~~~~vs~ 214 (276)
+.+.+.-.. ..-++++++.+ +|+.+.+.|+||||||||+++|+|. ++.-+|+|.+. +.++--++.
T Consensus 396 ~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL------------WP~g~G~I~~P~~~~~lflpQ 463 (604)
T COG4178 396 ENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL------------WPWGSGRISMPADSALLFLPQ 463 (604)
T ss_pred eeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc------------CccCCCceecCCCCceEEecC
Confidence 444444333 23467777777 8999999999999999999999994 46666666544 222222332
Q ss_pred ccCCCCceeeeEEEEecCC----------------------------------------------------CcEEEecCC
Q 023887 215 KSGRGKHTTRHVSLLPLSG----------------------------------------------------GGYLADTPG 242 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~----------------------------------------------------~~~iiDtPg 242 (276)
++-....+-+..-.||... +..++||-+
T Consensus 464 ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEAT 543 (604)
T COG4178 464 RPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543 (604)
T ss_pred CCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecch
Confidence 2222222223222333222 227999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHhhc-ceEEEeee
Q 023887 243 FNQPSLLKVTKQSLAQTFPEVCAV-GLLYMIHM 274 (276)
Q Consensus 243 ~~~~~l~~~~~~~l~~~f~ei~~~-~ii~~~H~ 274 (276)
. .+|...+..+.+.+++-... .+|-+.|-
T Consensus 544 s---ALDe~~e~~l~q~l~~~lp~~tvISV~Hr 573 (604)
T COG4178 544 S---ALDEETEDRLYQLLKEELPDATVISVGHR 573 (604)
T ss_pred h---ccChHHHHHHHHHHHhhCCCCEEEEeccc
Confidence 9 99988888888877774333 38888884
No 451
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.34 E-value=1.9e-06 Score=75.00 Aligned_cols=43 Identities=5% Similarity=-0.069 Sum_probs=35.3
Q ss_pred cCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc---c--eEEEeeeCC
Q 023887 231 LSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV---G--LLYMIHMLH 276 (276)
Q Consensus 231 ~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~---~--ii~~~H~~~ 276 (276)
..+..+++|||.. ++|......+.+.+.++... + +++++|+++
T Consensus 130 ~~p~illlDEP~~---glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~ 177 (198)
T cd03276 130 MESPFRCLDEFDV---FMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS 177 (198)
T ss_pred cCCCEEEecCccc---ccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence 3567799999999 99999999999999887542 2 888889874
No 452
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.34 E-value=2e-06 Score=83.82 Aligned_cols=26 Identities=46% Similarity=0.556 Sum_probs=23.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|-+++++|++|||||||+|.|.+..
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~ 227 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQD 227 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56789999999999999999999853
No 453
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.34 E-value=2.6e-07 Score=81.64 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.0
Q ss_pred hccCCEEEEEecCCCChhHHHHHHcC
Q 023887 156 RLRDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 156 ~l~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
....+.++|+|+||+|||||++.+.+
T Consensus 27 ~~~~~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 27 DPERQILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred cCCceEEEEECCCCCChHHHHHHHHH
Confidence 33447899999999999999999854
No 454
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.33 E-value=1.6e-06 Score=70.44 Aligned_cols=21 Identities=48% Similarity=0.670 Sum_probs=18.8
Q ss_pred EEEecCCCChhHHHHHHcCCC
Q 023887 163 VIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 163 ~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|.+|||||||+|.|.+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~ 21 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRR 21 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCc
Confidence 579999999999999999843
No 455
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.31 E-value=3.2e-07 Score=72.51 Aligned_cols=47 Identities=23% Similarity=0.300 Sum_probs=37.7
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++++++.+ +|+.++|+|+||+|||||++++. +|++.++|.++...+.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------------------~G~i~~~g~di~~~~~ 52 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI------------------KRKHRLVGDDNVEIRE 52 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------------------CCeEEEeeEeHHHhhh
Confidence 44555556 67999999999999999999986 2678888888877654
No 456
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.31 E-value=2.5e-06 Score=80.76 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=22.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|.+|||||||+|+|.+..
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~ 213 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGAD 213 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 679999999999999999999843
No 457
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.30 E-value=2.5e-06 Score=83.23 Aligned_cols=80 Identities=31% Similarity=0.347 Sum_probs=48.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEE--EecC-CC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL--LPLS-GG 234 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~--~~~~-~~ 234 (276)
.|-+++++|.+|||||||+|.|.+... ..++..++ +|+.... +... ..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~-------------------------a~v~~~~g----tT~d~~~~~i~~~g~~ 264 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER-------------------------AIVTDIAG----TTRDVIEEHINLDGIP 264 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC-------------------------cccCCCCC----cccccEEEEEEECCeE
Confidence 356899999999999999999998531 11222233 4433221 2222 24
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ 267 (276)
..++||||++.+. +..+...+...+..+....
T Consensus 265 i~l~DT~G~~~~~-~~ie~~gi~~~~~~~~~aD 296 (449)
T PRK05291 265 LRLIDTAGIRETD-DEVEKIGIERSREAIEEAD 296 (449)
T ss_pred EEEEeCCCCCCCc-cHHHHHHHHHHHHHHHhCC
Confidence 5789999996432 2333344555666666554
No 458
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.30 E-value=2.6e-06 Score=81.66 Aligned_cols=55 Identities=24% Similarity=0.351 Sum_probs=38.4
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceee--eEEEEecCC--CcE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR--HVSLLPLSG--GGY 236 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~--~~~~~~~~~--~~~ 236 (276)
-|+|||.||||||||||+|.+.. . .++..++ ||+ ...++.... ...
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k-------------------------~-~vs~~p~----TT~~p~~Giv~~~~~~~i~ 210 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK-------------------------P-KVADYPF----TTLVPNLGVVRVDDERSFV 210 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc-------------------------c-cccCCCC----CccCcEEEEEEeCCCcEEE
Confidence 59999999999999999999843 1 2343444 553 334444432 368
Q ss_pred EEecCCCCC
Q 023887 237 LADTPGFNQ 245 (276)
Q Consensus 237 iiDtPg~~~ 245 (276)
++||||+..
T Consensus 211 ~vDtPGi~~ 219 (390)
T PRK12298 211 VADIPGLIE 219 (390)
T ss_pred EEeCCCccc
Confidence 999999954
No 459
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.29 E-value=4.2e-07 Score=88.54 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=39.9
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccc-ceeeccccccccc
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKWFEDQRVGEVS 213 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G-~i~~~g~~~~~vs 213 (276)
++++++.+ +|+.++|+|+||+||||||+ .+.. .|++| +|.++|.++...+
T Consensus 22 L~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~------------~~~sGg~I~ldg~~~~~~~ 73 (504)
T TIGR03238 22 LVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR------------KFSEGYEFFLDATHSFSPN 73 (504)
T ss_pred HhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC------------CCCCCCEEEECCEECCCCC
Confidence 45555555 79999999999999999999 5544 67777 6999998886643
No 460
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.27 E-value=1.5e-06 Score=74.71 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=31.0
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHH-HHHHHHHhhc-c--eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSL-AQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l-~~~f~ei~~~-~--ii~~~H~~ 275 (276)
++..+++|||+. ++|..+...+ ...+..+.+. + ++++||+.
T Consensus 78 ~~~llllDEp~~---g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~ 122 (185)
T smart00534 78 ENSLVLLDELGR---GTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH 122 (185)
T ss_pred CCeEEEEecCCC---CCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence 346799999999 9998766665 4556777663 5 89999975
No 461
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.27 E-value=4.9e-06 Score=71.32 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=35.5
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+..+++|||.. ++|......+.+.+.++.+.+ +|++||+.
T Consensus 116 ~p~llilDEp~~---~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~ 158 (178)
T cd03239 116 PSPFYVLDEIDA---ALDPTNRRRVSDMIKEMAKHTSQFIVITLKK 158 (178)
T ss_pred CCCEEEEECCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 346689999999 999989999999999987765 99999985
No 462
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.26 E-value=1.5e-06 Score=72.37 Aligned_cols=22 Identities=50% Similarity=0.711 Sum_probs=20.5
Q ss_pred EEEEecCCCChhHHHHHHcCCC
Q 023887 162 TVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 162 v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
|+|+|..++|||||||+|+|..
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ 22 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRP 22 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS
T ss_pred CEEEcCCCCCHHHHHHHHHhcc
Confidence 6899999999999999999965
No 463
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.26 E-value=2.6e-06 Score=83.49 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=82.1
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
.+.++++.+ +|++++|.|--|+|+|=|+++|.|.. ++.+|+|.++|+++.--++... ....+.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~------------~~~~G~i~l~G~~v~~~sp~~A----i~~Gi~ 337 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR------------PASSGEILLDGKPVRIRSPRDA----IKAGIA 337 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC------------cCCCceEEECCEEccCCCHHHH----HHcCCE
Confidence 367788877 89999999999999999999999955 7889999999987654332211 111122
Q ss_pred EEecCC--------------------------------------------------------------------------
Q 023887 228 LLPLSG-------------------------------------------------------------------------- 233 (276)
Q Consensus 228 ~~~~~~-------------------------------------------------------------------------- 233 (276)
+++-+.
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~ 417 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLA 417 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHh
Confidence 222111
Q ss_pred ---CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 ---GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ---~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|+|+- ++|--.+.++.+++.++.++| |+++|-++
T Consensus 418 ~~p~vLilDEPTR---GIDVGAK~eIy~li~~lA~~G~ail~iSSEl 461 (500)
T COG1129 418 TDPKVLILDEPTR---GIDVGAKAEIYRLIRELAAEGKAILMISSEL 461 (500)
T ss_pred cCCCEEEECCCCc---CcccchHHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 1179999999 999889999999999999998 77777654
No 464
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.25 E-value=4.6e-06 Score=74.06 Aligned_cols=63 Identities=25% Similarity=0.288 Sum_probs=41.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecC------C
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS------G 233 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~------~ 233 (276)
..++++|+.++|||||||.|.|... +..++.-. ..+|+.+-+.... .
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~---------------------~f~~~~~~------~~~T~gi~~~~~~~~~~~~~ 60 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLS---------------------GFDVMDTS------QQTTKGIWMWSVPFKLGKEH 60 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC---------------------CeEecCCC------CCCccceEEEeccccCCCcc
Confidence 4789999999999999999999521 12222111 2266655544332 3
Q ss_pred CcEEEecCCCCCCCCC
Q 023887 234 GGYLADTPGFNQPSLL 249 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~ 249 (276)
..+++||||+......
T Consensus 61 ~v~~lDteG~~~~~~~ 76 (224)
T cd01851 61 AVLLLDTEGTDGRERG 76 (224)
T ss_pred eEEEEecCCcCccccC
Confidence 5689999999655543
No 465
>PRK04213 GTP-binding protein; Provisional
Probab=98.25 E-value=6.9e-06 Score=70.55 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
...++++|.+|||||||+|.|.+.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~ 32 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGK 32 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999984
No 466
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.23 E-value=1.8e-06 Score=71.48 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|.+|||||||+|+|.+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~ 24 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK 24 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999843
No 467
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.22 E-value=2.5e-06 Score=75.80 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=59.4
Q ss_pred HHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc--------ccccccccccCCCCce
Q 023887 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED--------QRVGEVSTKSGRGKHT 222 (276)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g--------~~~~~vs~~~g~gk~t 222 (276)
++++.+ +|++++|.|+||+||||+++.+.+.. +.+..|...... +-...+...+......
T Consensus 23 ~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~-----------~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~ 91 (222)
T cd03287 23 DIHLSAEGGYCQIITGPNMGGKSSYIRQVALIT-----------IMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGM 91 (222)
T ss_pred eEEEEecCCcEEEEECCCCCCHHHHHHHHHHHH-----------HHHhCCCEEEcCceEEeccceEEEEecCcccccccc
Confidence 333334 57899999999999999999998832 144555432221 0000010000000000
Q ss_pred eeeE-------EEEe--cCCCcEEEecCCCCCCCCChhhHHHH-HHHHHHHhhc-c--eEEEeeeC
Q 023887 223 TRHV-------SLLP--LSGGGYLADTPGFNQPSLLKVTKQSL-AQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 223 t~~~-------~~~~--~~~~~~iiDtPg~~~~~l~~~~~~~l-~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+.. .++. .....+|+||||- +.+..+...+ ...+..+.+. + ++++||+.
T Consensus 92 StF~~e~~~~~~il~~~~~~sLvllDE~~~---gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~ 154 (222)
T cd03287 92 STFMVELSETSHILSNCTSRSLVILDELGR---GTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYP 154 (222)
T ss_pred chHHHHHHHHHHHHHhCCCCeEEEEccCCC---CCChhhHHHHHHHHHHHHHhccCCeEEEEcccH
Confidence 0000 0000 0134589999998 6655444443 4566666665 4 89999985
No 468
>PRK11058 GTPase HflX; Provisional
Probab=98.22 E-value=5.4e-06 Score=80.39 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|+|.+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~ 221 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEAR 221 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999854
No 469
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.22 E-value=8.6e-07 Score=86.73 Aligned_cols=47 Identities=26% Similarity=0.389 Sum_probs=39.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.+..++.....+.+..+.+ +|++++++|+||+||||+|+++.+..
T Consensus 78 ~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 78 IESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred eeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCC
Confidence 355667777667777777776 89999999999999999999999976
No 470
>PTZ00258 GTP-binding protein; Provisional
Probab=98.22 E-value=5.4e-06 Score=79.42 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=23.4
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+..++|+|.||||||||+|+|.+..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~ 45 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ 45 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc
Confidence 56789999999999999999998854
No 471
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.21 E-value=3.6e-06 Score=80.95 Aligned_cols=23 Identities=43% Similarity=0.616 Sum_probs=20.7
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|.+|||||||+|.|.+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~ 23 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKR 23 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
No 472
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.20 E-value=5.5e-06 Score=75.90 Aligned_cols=94 Identities=23% Similarity=0.230 Sum_probs=49.4
Q ss_pred EEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEEecC
Q 023887 162 TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLADTP 241 (276)
Q Consensus 162 v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiDtP 241 (276)
++|+|.||||||||+|+|.+... .+..+.-+..+|..|.+.+.+.+...+....+- ...++ ....++|+|
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~-------~k~~~--~~i~lvD~p 70 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKP-------KKIVP--ATIEFVDIA 70 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCC-------ceeee--eEEEEEECC
Confidence 58999999999999999999652 122222233355556655554433222211110 00010 124678999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHhhcc
Q 023887 242 GFNQPSLLKVTKQSLAQTFPEVCAVG 267 (276)
Q Consensus 242 g~~~~~l~~~~~~~l~~~f~ei~~~~ 267 (276)
|+.... .. ...--.+.+..++...
T Consensus 71 Gl~~~a-~~-~~glg~~fL~~i~~~D 94 (274)
T cd01900 71 GLVKGA-SK-GEGLGNKFLSHIREVD 94 (274)
T ss_pred CcCCCC-ch-hhHHHHHHHHHHHhCC
Confidence 995322 11 2222234555566554
No 473
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.20 E-value=6.3e-06 Score=76.49 Aligned_cols=62 Identities=29% Similarity=0.304 Sum_probs=42.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE--EEecCC-Cc
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS--LLPLSG-GG 235 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~--~~~~~~-~~ 235 (276)
..++.+.|+||||||||++.|.+.. -+++ +.+- ||..+. .+...+ ..
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Ak-----------------------pEvA---~YPF----TTK~i~vGhfe~~~~R~ 217 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAK-----------------------PEVA---PYPF----TTKGIHVGHFERGYLRI 217 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCC-----------------------CccC---CCCc----cccceeEeeeecCCceE
Confidence 4689999999999999999999964 2233 2332 665443 443333 45
Q ss_pred EEEecCCCCCCCCCh
Q 023887 236 YLADTPGFNQPSLLK 250 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~ 250 (276)
.++||||+-.-.++.
T Consensus 218 QvIDTPGlLDRPl~E 232 (346)
T COG1084 218 QVIDTPGLLDRPLEE 232 (346)
T ss_pred EEecCCcccCCChHH
Confidence 799999995555543
No 474
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.20 E-value=5.9e-06 Score=75.66 Aligned_cols=23 Identities=43% Similarity=0.742 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|++|+|||||+|.|.+..
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~ 28 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTK 28 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCC
Confidence 68999999999999999999854
No 475
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.19 E-value=7.4e-06 Score=79.63 Aligned_cols=114 Identities=20% Similarity=0.189 Sum_probs=77.0
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc---cCCCCcee
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK---SGRGKHTT 223 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~---~g~gk~tt 223 (276)
..++.+ +.+ +|++++|+|+||+|||||+++|.+.. +|+.|.|.+.|++-.++.+. .-......
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~------------~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~ 213 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT------------SADLNVIALIGERGREVREFIERDLGPEGLK 213 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc------------CCCeEEEEEEecCCccHHHHHHhhcChhhhc
Confidence 346666 444 89999999999999999999999955 88999999876655443311 00111134
Q ss_pred eeEEEEecCCCc--------------------------EEEe-----------------c-CCCCCCCCChhhHHHHHHH
Q 023887 224 RHVSLLPLSGGG--------------------------YLAD-----------------T-PGFNQPSLLKVTKQSLAQT 259 (276)
Q Consensus 224 ~~~~~~~~~~~~--------------------------~iiD-----------------t-Pg~~~~~l~~~~~~~l~~~ 259 (276)
+.+.++.....- +++| + |+. .++++.....+.++
T Consensus 214 r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~--~G~dp~~~~~l~~l 291 (438)
T PRK07721 214 RSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTT--KGYTPSVFAILPKL 291 (438)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCcc--ccCCHHHHHHHHHH
Confidence 455555543221 5667 3 333 36777778888899
Q ss_pred HHHHhh--cc-------eEEEeeeCC
Q 023887 260 FPEVCA--VG-------LLYMIHMLH 276 (276)
Q Consensus 260 f~ei~~--~~-------ii~~~H~~~ 276 (276)
+.++.. .| +++.+||++
T Consensus 292 ler~~~~~~GsIT~~~TVlv~~hdm~ 317 (438)
T PRK07721 292 LERTGTNASGSITAFYTVLVDGDDMN 317 (438)
T ss_pred HHHhcCCCCCCeeeEEEEEEECCCCC
Confidence 988873 34 588899874
No 476
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.18 E-value=1.1e-06 Score=84.63 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=32.8
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
|++|+|.. .||-...-...+.++++.+.+ ++++.|||
T Consensus 235 Y~FDEpsS---yLDi~qRl~~ar~Irel~~~~k~ViVVEHDL 273 (591)
T COG1245 235 YFFDEPSS---YLDIRQRLNAARVIRELAEDGKYVIVVEHDL 273 (591)
T ss_pred EEEcCCcc---cccHHHHHHHHHHHHHHhccCCeEEEEechH
Confidence 89999998 898777778889999999864 99999997
No 477
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.18 E-value=9.7e-06 Score=76.94 Aligned_cols=96 Identities=24% Similarity=0.225 Sum_probs=51.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEEe
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiD 239 (276)
.+++|+|.||||||||+|+|.+.. ..+..+..+.-+|..|.+.+.+.+...++.... +. ..++ ....++|
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~--p~-----~~~~--a~i~lvD 72 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVK--PK-----KIVP--ATIEFVD 72 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcC--Cc-----cccC--ceEEEEE
Confidence 579999999999999999999965 222222333335555555555433222221110 00 0000 1346889
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHhhcc
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFPEVCAVG 267 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ei~~~~ 267 (276)
+||+.... . ....--.+.+..+++..
T Consensus 73 ~pGL~~~a-~-~g~glg~~fL~~i~~aD 98 (364)
T PRK09601 73 IAGLVKGA-S-KGEGLGNQFLANIREVD 98 (364)
T ss_pred CCCCCCCC-C-hHHHHHHHHHHHHHhCC
Confidence 99995322 1 12222245566666655
No 478
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.16 E-value=1.3e-05 Score=69.10 Aligned_cols=23 Identities=43% Similarity=0.640 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-+++|+|++|||||||+|.|.+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999984
No 479
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.14 E-value=2.4e-06 Score=70.88 Aligned_cols=20 Identities=50% Similarity=0.773 Sum_probs=18.1
Q ss_pred EEecCCCChhHHHHHHcCCC
Q 023887 164 IVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 164 lvG~sGvGKSTLiN~L~g~~ 183 (276)
|+|++|||||||+|+|.+..
T Consensus 1 iiG~~~~GKStll~~l~~~~ 20 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK 20 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCC
Confidence 58999999999999999853
No 480
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.14 E-value=1.2e-05 Score=66.40 Aligned_cols=23 Identities=52% Similarity=0.655 Sum_probs=21.0
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|.+|||||||+|.|.+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~ 24 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK 24 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999853
No 481
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.13 E-value=9.8e-06 Score=67.74 Aligned_cols=69 Identities=26% Similarity=0.412 Sum_probs=0.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEEe
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiD 239 (276)
+.++++|.+|||||||+|.|.|... .......+...... ++|
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~-------------------------------------~~~~~~~v~~~~~~-~iD 43 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYT-------------------------------------LARKTQAVEFNDKG-DID 43 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCc-------------------------------------cCccceEEEECCCC-ccc
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEE
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYM 271 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~ 271 (276)
|||. .... .+.....+..+.... ++++
T Consensus 44 tpG~---~~~~--~~~~~~~~~~~~~ad~il~v 71 (158)
T PRK15467 44 TPGE---YFSH--PRWYHALITTLQDVDMLIYV 71 (158)
T ss_pred CCcc---ccCC--HHHHHHHHHHHhcCCEEEEE
No 482
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.11 E-value=9.5e-06 Score=67.32 Aligned_cols=24 Identities=38% Similarity=0.746 Sum_probs=22.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++++|||++|||||||+++|.|..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 579999999999999999999854
No 483
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.09 E-value=1e-05 Score=74.37 Aligned_cols=23 Identities=43% Similarity=0.741 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|.+|+|||||||.|.+..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~ 28 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSD 28 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999999965
No 484
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.07 E-value=9e-06 Score=66.21 Aligned_cols=19 Identities=47% Similarity=0.796 Sum_probs=17.5
Q ss_pred EEecCCCChhHHHHHHcCC
Q 023887 164 IVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 164 lvG~sGvGKSTLiN~L~g~ 182 (276)
|+|.+|||||||+|.+.+.
T Consensus 1 l~G~~~~GKssl~~~~~~~ 19 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGA 19 (158)
T ss_pred CCCCCCCCHHHHHHHHhcC
Confidence 5899999999999999984
No 485
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.07 E-value=7.4e-06 Score=67.04 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=20.5
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||+|.|.+.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~ 23 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI 23 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc
Confidence 6899999999999999999974
No 486
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.06 E-value=1.3e-05 Score=81.95 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=35.4
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
||+|||+- +|...+.+.|.+.+..+...| ++++.|+|+
T Consensus 847 YiLDEPTT---GLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd 886 (935)
T COG0178 847 YILDEPTT---GLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD 886 (935)
T ss_pred EEeCCCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 79999999 998888999999999999998 999999985
No 487
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.05 E-value=5e-06 Score=71.44 Aligned_cols=46 Identities=28% Similarity=0.303 Sum_probs=37.0
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (276)
.+-|.+.+ +|+.++|+|++|+|||||+++|++.. +|+.|.+.+++.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i------------~~~~~~i~ied~ 61 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI------------PPDERIITIEDT 61 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc------------CCCCCEEEECCc
Confidence 33444444 78999999999999999999999965 788888887654
No 488
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.04 E-value=1.9e-05 Score=77.45 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~ 62 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRR 62 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcC
Confidence 479999999999999999999843
No 489
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.04 E-value=1.2e-05 Score=76.42 Aligned_cols=64 Identities=36% Similarity=0.444 Sum_probs=37.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecC--CCcE
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS--GGGY 236 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~--~~~~ 236 (276)
.-.+|++|.||+|||||||+|.|.... ++.+ -+++.+ +||....-|+-+ ++..
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~----------d~~a-------A~tGv~--------etT~~~~~Y~~p~~pnv~ 89 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHE----------DEGA-------APTGVV--------ETTMEPTPYPHPKFPNVT 89 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TT----------STTS---------SSSH--------SCCTS-EEEE-SS-TTEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCC----------CcCc-------CCCCCC--------cCCCCCeeCCCCCCCCCe
Confidence 357999999999999999999996420 1110 111111 255555555554 4778
Q ss_pred EEecCCCCCCC
Q 023887 237 LADTPGFNQPS 247 (276)
Q Consensus 237 iiDtPg~~~~~ 247 (276)
+-|-||+..+.
T Consensus 90 lWDlPG~gt~~ 100 (376)
T PF05049_consen 90 LWDLPGIGTPN 100 (376)
T ss_dssp EEEE--GGGSS
T ss_pred EEeCCCCCCCC
Confidence 88999995443
No 490
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.03 E-value=3.2e-05 Score=63.40 Aligned_cols=24 Identities=46% Similarity=0.609 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++++|.+|+|||||+|.|.+..
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~ 26 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEE 26 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcc
Confidence 368999999999999999999853
No 491
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.03 E-value=3.7e-05 Score=69.14 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|++|+||||+|++|+|..
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCC
Confidence 479999999999999999999964
No 492
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.01 E-value=2.6e-05 Score=68.66 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=35.1
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c---eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G---LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~---ii~~~H~~ 275 (276)
++..+++|||.. ++|......+.+.+.++.+. + ++++||++
T Consensus 148 ~p~llllDEP~~---~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~ 192 (213)
T cd03277 148 RCPFRVVDEINQ---GMDPTNERKVFDMLVETACKEGTSQYFLITPKL 192 (213)
T ss_pred CCCEEEEecccc---cCCHHHHHHHHHHHHHHhhcCCCceEEEEchhh
Confidence 456799999999 99999999999999998765 3 79999875
No 493
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.01 E-value=4.5e-05 Score=66.29 Aligned_cols=85 Identities=26% Similarity=0.318 Sum_probs=55.4
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCC-CEEEEEeCCCCCCHHHHH----HHHHHhhh---cCceeEEEe
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVLN----TWKSRLHT---WGYEPLFCS 143 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~-~~~ivlnK~Dl~~~~~~~----~~~~~~~~---~~~~~~~~s 143 (276)
..++++|.+++|+|+..|...... .+.+..+...+. |+++|+||+|+.+++... .+...+.. .+++++.+|
T Consensus 102 ~~~~~~D~~llVvd~~~~~~~~~t-~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vS 180 (203)
T cd01888 102 SGAAVMDGALLLIAANEPCPQPQT-SEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPIS 180 (203)
T ss_pred HhhhcCCEEEEEEECCCCCCCcch-HHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEe
Confidence 357899999999999865433222 234444454555 578899999998754332 22222222 245678889
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++.|...+
T Consensus 181 A~~g~gi~~L~~~l 194 (203)
T cd01888 181 AQLKYNIDVLLEYI 194 (203)
T ss_pred CCCCCCHHHHHHHH
Confidence 88888888877655
No 494
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.00 E-value=2.5e-05 Score=62.23 Aligned_cols=20 Identities=45% Similarity=0.662 Sum_probs=18.1
Q ss_pred EEecCCCChhHHHHHHcCCC
Q 023887 164 IVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 164 lvG~sGvGKSTLiN~L~g~~ 183 (276)
++|++|+|||||+|.|.+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~ 20 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQE 20 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcc
Confidence 58999999999999999854
No 495
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.99 E-value=1.3e-05 Score=72.92 Aligned_cols=26 Identities=42% Similarity=0.632 Sum_probs=21.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+...+.++|.+|+|||||+|+|.+..
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~ 63 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGE 63 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcc
Confidence 34567799999999999999999643
No 496
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.99 E-value=5.1e-06 Score=73.62 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=62.6
Q ss_pred HHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE---
Q 023887 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV--- 226 (276)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~--- 226 (276)
+++++.. +++.++|.|+|++||||+++.+...... +-..-+-+..+.++.+...-...+...+.......+..
T Consensus 21 ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l---a~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~ 97 (218)
T cd03286 21 NDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM---AQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVEL 97 (218)
T ss_pred eeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH---HHcCCccCccccEeccccEEEEecCcccccccCcchHHHHH
Confidence 3444444 4789999999999999999988764210 00000112222222221111111111100000000000
Q ss_pred ----EEE--ecCCCcEEEecCCCCCCCCChhhHHHHHHH-HHHHhhc-c--eEEEeeeC
Q 023887 227 ----SLL--PLSGGGYLADTPGFNQPSLLKVTKQSLAQT-FPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 227 ----~~~--~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~-f~ei~~~-~--ii~~~H~~ 275 (276)
.++ ...+..+++||||- +.+..+...+... +..+.+. + ++++||++
T Consensus 98 ~~~~~il~~~~~~sLvLlDE~~~---Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 98 SETANILRHATPDSLVILDELGR---GTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred HHHHHHHHhCCCCeEEEEecccC---CCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 000 01235689999999 8877776777666 6777764 5 89999985
No 497
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.98 E-value=3.3e-05 Score=71.71 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=32.9
Q ss_pred HHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeec
Q 023887 153 LLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFE 205 (276)
Q Consensus 153 l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~ 205 (276)
|...+ .|+.++|+|++|+|||||+|+|++.. +|..|.+.++
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~------------~~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEI------------PKDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccC------------CccccEEEEc
Confidence 34444 68899999999999999999999965 6777766664
No 498
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=6.2e-06 Score=80.44 Aligned_cols=101 Identities=21% Similarity=0.216 Sum_probs=63.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc-cccc-------------------cccccCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ-RVGE-------------------VSTKSGR 218 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~-~~~~-------------------vs~~~g~ 218 (276)
..+++++|++|.||||+++.+.+.. .|..|-+.++.. +++. ....+|+
T Consensus 390 ~sRi~~vg~ng~gkst~lKi~~~~l------------~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~ 457 (582)
T KOG0062|consen 390 DSRISRVGENGDGKSTLLKILKGDL------------TPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK 457 (582)
T ss_pred hhhhheeccCchhHHHHHHHHhccC------------CcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC
Confidence 4689999999999999999999977 677776644321 1110 0001111
Q ss_pred -----------------------------CCceeeeEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcceE
Q 023887 219 -----------------------------GKHTTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLL 269 (276)
Q Consensus 219 -----------------------------gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii 269 (276)
+|..-....+..+.+..+++|||+. .||-.+.+.|.+.+..|.- ||+
T Consensus 458 ~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTN---hLD~dsl~AL~~Al~~F~G-GVv 533 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTN---HLDRDSLGALAKALKNFNG-GVV 533 (582)
T ss_pred CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCc---cccHHHHHHHHHHHHhcCC-cEE
Confidence 1111111111222334489999999 8887777777777666542 499
Q ss_pred EEeeeC
Q 023887 270 YMIHML 275 (276)
Q Consensus 270 ~~~H~~ 275 (276)
++|||.
T Consensus 534 ~VSHd~ 539 (582)
T KOG0062|consen 534 LVSHDE 539 (582)
T ss_pred EEECcH
Confidence 999985
No 499
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.98 E-value=3e-06 Score=82.12 Aligned_cols=101 Identities=22% Similarity=0.325 Sum_probs=63.5
Q ss_pred cchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
..++.+....+|++++|+|+||+|||||+|+|.+.. .++.+.+...|++ ++|++..+.
T Consensus 146 ~aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~------------~~~v~vi~~iGer----------grev~e~~~ 203 (434)
T PRK08472 146 KSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGC------------LAPIKVVALIGER----------GREIPEFIE 203 (434)
T ss_pred HHhhhcceecCCCEEEEECCCCCCHHHHHHHHhhcc------------CCCEEEEEeeCcc----------chhHHHHHH
Confidence 356666323389999999999999999999999855 4444444444443 333332211
Q ss_pred EEecCC---CcEEE-----ecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeee
Q 023887 228 LLPLSG---GGYLA-----DTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHM 274 (276)
Q Consensus 228 ~~~~~~---~~~ii-----DtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~ 274 (276)
..+.. +..++ |+|+.+..... ....+.++|++- ...++++.-+
T Consensus 204 -~~l~~~l~~tvvV~atsddsp~~R~~~~~--~a~~iAEyFrd~-G~~Vll~~Ds 254 (434)
T PRK08472 204 -KNLGGDLENTVIVVATSDDSPLMRKYGAF--CAMSVAEYFKNQ-GLDVLFIMDS 254 (434)
T ss_pred -HHhcCcccceEEEEECCCCCHHHhhHHHH--HHHHHHHHHHHc-CCCEEEeccc
Confidence 11121 55677 88999766644 367788888873 2336655433
No 500
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.96 E-value=8.8e-06 Score=72.76 Aligned_cols=23 Identities=52% Similarity=0.767 Sum_probs=20.9
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++||+||.|||||+|.|....
T Consensus 48 NIMVVgqSglgkstlinTlf~s~ 70 (336)
T KOG1547|consen 48 NIMVVGQSGLGKSTLINTLFKSH 70 (336)
T ss_pred EEEEEecCCCCchhhHHHHHHHH
Confidence 68999999999999999998754
Done!