Query 023887
Match_columns 276
No_of_seqs 286 out of 2708
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 14:27:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t9h_A YLOQ, probable GTPase E 100.0 3.8E-45 1.3E-49 336.8 16.3 236 3-264 13-255 (307)
2 2rcn_A Probable GTPase ENGC; Y 100.0 1.4E-41 4.8E-46 318.8 19.9 235 1-266 48-301 (358)
3 2yv5_A YJEQ protein; hydrolase 100.0 1E-39 3.5E-44 299.4 21.0 235 1-263 7-247 (302)
4 1u0l_A Probable GTPase ENGC; p 100.0 1.9E-31 6.6E-36 244.1 21.0 236 1-265 11-253 (301)
5 1puj_A YLQF, conserved hypothe 99.8 1.1E-20 3.9E-25 171.4 14.0 144 72-249 19-181 (282)
6 3cnl_A YLQF, putative uncharac 99.8 2.8E-21 9.5E-26 173.8 9.4 142 70-248 15-159 (262)
7 2pcj_A ABC transporter, lipopr 99.7 2.2E-18 7.4E-23 151.3 6.5 123 137-275 7-200 (224)
8 3ec1_A YQEH GTPase; atnos1, at 99.7 3.8E-18 1.3E-22 160.2 8.3 160 72-260 67-241 (369)
9 3gfo_A Cobalt import ATP-bindi 99.7 2.4E-18 8.4E-23 155.7 6.7 123 136-276 9-205 (275)
10 3h2y_A GTPase family protein; 99.7 3.4E-18 1.1E-22 160.6 6.8 162 71-260 64-240 (368)
11 1vpl_A ABC transporter, ATP-bi 99.7 4.9E-18 1.7E-22 152.2 6.9 120 135-275 16-206 (256)
12 3rlf_A Maltose/maltodextrin im 99.7 5.5E-18 1.9E-22 159.8 7.5 118 136-275 5-194 (381)
13 3tif_A Uncharacterized ABC tra 99.7 3.4E-18 1.2E-22 151.1 5.7 123 137-275 4-206 (235)
14 1ji0_A ABC transporter; ATP bi 99.7 4.9E-18 1.7E-22 150.5 6.4 120 137-275 9-199 (240)
15 4g1u_C Hemin import ATP-bindin 99.7 6.2E-18 2.1E-22 152.2 6.2 119 137-275 14-208 (266)
16 2olj_A Amino acid ABC transpor 99.7 6.9E-18 2.4E-22 151.8 6.4 123 135-275 25-219 (263)
17 3nh6_A ATP-binding cassette SU 99.7 5.4E-18 1.8E-22 155.7 5.4 121 135-275 54-249 (306)
18 3tui_C Methionine import ATP-b 99.7 8.7E-18 3E-22 157.7 6.1 124 136-276 26-225 (366)
19 2ff7_A Alpha-hemolysin translo 99.7 2.1E-17 7.3E-22 147.1 7.4 120 136-276 9-205 (247)
20 2yyz_A Sugar ABC transporter, 99.7 2.1E-17 7.2E-22 154.8 7.5 117 137-275 6-194 (359)
21 3fvq_A Fe(3+) IONS import ATP- 99.7 2E-17 6.9E-22 154.9 7.2 122 136-275 6-199 (359)
22 1z47_A CYSA, putative ABC-tran 99.7 2.2E-17 7.6E-22 154.5 7.0 117 137-275 17-206 (355)
23 1g29_1 MALK, maltose transport 99.7 3E-17 1E-21 154.5 7.6 123 137-275 6-200 (372)
24 1v43_A Sugar-binding transport 99.7 2.8E-17 9.7E-22 154.6 7.3 118 136-275 13-202 (372)
25 2it1_A 362AA long hypothetical 99.7 2.3E-17 7.9E-22 154.7 6.5 117 137-275 6-194 (362)
26 1sgw_A Putative ABC transporte 99.7 5.1E-17 1.7E-21 141.9 8.0 126 135-276 11-194 (214)
27 1g6h_A High-affinity branched- 99.7 3.3E-17 1.1E-21 146.6 6.8 126 136-276 9-214 (257)
28 1b0u_A Histidine permease; ABC 99.7 2.9E-17 9.9E-22 147.4 6.3 123 136-275 8-213 (262)
29 2ihy_A ABC transporter, ATP-bi 99.7 1.9E-17 6.7E-22 150.0 5.2 121 136-276 23-224 (279)
30 1oxx_K GLCV, glucose, ABC tran 99.7 2.6E-17 9E-22 153.9 6.0 122 137-275 6-201 (353)
31 1mv5_A LMRA, multidrug resista 99.7 2.1E-17 7E-22 146.6 4.4 118 137-275 4-198 (243)
32 2ixe_A Antigen peptide transpo 99.7 4.3E-17 1.5E-21 147.1 6.2 120 136-275 18-217 (271)
33 3d31_A Sulfate/molybdate ABC t 99.7 4.5E-17 1.5E-21 152.0 5.0 116 137-275 4-188 (348)
34 2onk_A Molybdate/tungstate ABC 99.6 8E-17 2.7E-21 142.9 5.3 114 137-275 4-187 (240)
35 2d2e_A SUFC protein; ABC-ATPas 99.6 4.2E-17 1.4E-21 145.3 3.2 127 137-276 6-204 (250)
36 2zu0_C Probable ATP-dependent 99.6 1.1E-16 3.6E-21 144.1 5.7 129 135-276 21-225 (267)
37 2ghi_A Transport protein; mult 99.6 2.7E-16 9.1E-21 141.0 7.3 121 135-276 18-215 (260)
38 2yz2_A Putative ABC transporte 99.6 3.7E-16 1.3E-20 140.4 7.6 125 137-276 5-199 (266)
39 3b5x_A Lipid A export ATP-bind 99.6 8.5E-16 2.9E-20 151.9 8.6 120 135-275 342-539 (582)
40 2qi9_C Vitamin B12 import ATP- 99.6 4.1E-16 1.4E-20 139.1 5.7 107 148-275 14-193 (249)
41 4a82_A Cystic fibrosis transme 99.6 5.2E-16 1.8E-20 153.4 6.5 122 135-276 340-537 (578)
42 3qf4_A ABC transporter, ATP-bi 99.6 5.7E-16 1.9E-20 153.5 6.4 121 135-275 342-538 (587)
43 3qf4_B Uncharacterized ABC tra 99.6 7.5E-16 2.6E-20 152.9 7.1 122 135-276 355-551 (598)
44 2nq2_C Hypothetical ABC transp 99.6 1.3E-15 4.5E-20 136.0 7.5 123 137-275 7-189 (253)
45 3b60_A Lipid A export ATP-bind 99.6 9.8E-16 3.3E-20 151.5 7.3 122 135-276 342-540 (582)
46 2pjz_A Hypothetical protein ST 99.6 2.1E-15 7.3E-20 135.5 6.2 115 137-276 4-186 (263)
47 2yl4_A ATP-binding cassette SU 99.6 2.2E-15 7.4E-20 149.4 6.6 121 135-275 342-542 (595)
48 2cbz_A Multidrug resistance-as 99.6 3.1E-15 1.1E-19 132.3 6.8 123 137-276 6-190 (237)
49 3gd7_A Fusion complex of cysti 99.6 1.3E-15 4.3E-20 144.2 3.9 121 135-276 20-215 (390)
50 4f4c_A Multidrug resistance pr 99.5 2.3E-15 8E-20 161.2 5.5 122 135-276 1077-1277(1321)
51 2pze_A Cystic fibrosis transme 99.5 3.5E-15 1.2E-19 131.2 5.2 58 137-206 9-69 (229)
52 2hjg_A GTP-binding protein ENG 99.5 1.1E-14 3.8E-19 139.1 7.7 110 68-183 74-199 (436)
53 4f4c_A Multidrug resistance pr 99.5 2.5E-14 8.4E-19 153.3 7.3 122 135-276 416-614 (1321)
54 1mky_A Probable GTP-binding pr 99.5 1.1E-13 3.7E-18 132.3 10.9 110 70-183 75-204 (439)
55 3g5u_A MCG1178, multidrug resi 99.5 2.4E-14 8.3E-19 152.9 6.3 121 135-275 388-585 (1284)
56 3g5u_A MCG1178, multidrug resi 99.5 4E-14 1.4E-18 151.3 7.9 120 137-276 1033-1231(1284)
57 4dcu_A GTP-binding protein ENG 99.4 6.2E-13 2.1E-17 127.6 11.2 110 68-183 94-219 (456)
58 2bbs_A Cystic fibrosis transme 99.4 1.2E-13 4.1E-18 125.7 4.4 48 147-206 51-99 (290)
59 1yqt_A RNAse L inhibitor; ATP- 99.3 5.4E-13 1.8E-17 131.0 6.1 121 139-275 26-218 (538)
60 3bk7_A ABC transporter ATP-bin 99.3 6.3E-13 2.2E-17 132.2 4.4 122 138-275 95-288 (607)
61 3bk7_A ABC transporter ATP-bin 99.3 2.3E-12 7.7E-17 128.2 7.7 102 158-275 381-532 (607)
62 1yqt_A RNAse L inhibitor; ATP- 99.3 2.4E-12 8.1E-17 126.4 7.3 102 158-275 311-462 (538)
63 3ozx_A RNAse L inhibitor; ATP 99.3 1.8E-12 6.2E-17 127.2 5.4 36 236-275 160-197 (538)
64 3ozx_A RNAse L inhibitor; ATP 99.3 3.2E-12 1.1E-16 125.5 6.0 104 158-276 293-447 (538)
65 3j16_B RLI1P; ribosome recycli 99.3 2.2E-12 7.6E-17 128.3 4.8 37 236-275 243-281 (608)
66 4gp7_A Metallophosphoesterase; 99.1 8.6E-13 2.9E-17 110.2 -4.7 113 158-275 8-159 (171)
67 3j16_B RLI1P; ribosome recycli 99.1 9.9E-11 3.4E-15 116.5 8.9 38 235-275 488-528 (608)
68 2iw3_A Elongation factor 3A; a 99.1 3.3E-12 1.1E-16 132.6 -2.7 55 140-206 677-734 (986)
69 3ux8_A Excinuclease ABC, A sub 99.1 1.7E-11 5.9E-16 122.9 1.8 39 235-276 225-265 (670)
70 2eyu_A Twitching motility prot 99.1 1.4E-10 4.7E-15 103.8 6.7 102 149-276 16-134 (261)
71 3b85_A Phosphate starvation-in 99.1 4.2E-11 1.4E-15 103.8 2.7 45 143-203 9-53 (208)
72 3szr_A Interferon-induced GTP- 99.1 1.9E-10 6.4E-15 114.4 7.6 102 161-276 47-197 (608)
73 2pt7_A CAG-ALFA; ATPase, prote 99.1 4.2E-10 1.4E-14 103.9 9.4 101 147-276 158-276 (330)
74 3ux8_A Excinuclease ABC, A sub 99.0 6.5E-11 2.2E-15 118.7 0.5 38 235-275 567-606 (670)
75 3sop_A Neuronal-specific septi 98.9 3.9E-10 1.3E-14 101.3 4.4 65 161-245 4-72 (270)
76 1tf7_A KAIC; homohexamer, hexa 98.9 1.9E-10 6.6E-15 112.2 2.2 119 146-276 24-186 (525)
77 1tq4_A IIGP1, interferon-induc 98.9 1.7E-09 5.8E-14 102.9 6.7 71 148-244 37-131 (413)
78 2qm8_A GTPase/ATPase; G protei 98.9 2.3E-10 7.8E-15 105.9 0.4 61 140-212 35-96 (337)
79 2ehv_A Hypothetical protein PH 98.8 2.1E-10 7.1E-15 99.5 -0.9 40 233-275 136-182 (251)
80 2dpy_A FLII, flagellum-specifi 98.8 9.6E-10 3.3E-14 105.3 3.5 125 138-276 135-318 (438)
81 1rj9_A FTSY, signal recognitio 98.8 1E-09 3.6E-14 100.3 2.7 42 158-211 101-142 (304)
82 2iw3_A Elongation factor 3A; a 98.8 2.5E-09 8.7E-14 111.1 5.7 42 140-181 441-483 (986)
83 2e87_A Hypothetical protein PH 98.8 5.9E-10 2E-14 103.5 0.6 78 106-183 87-191 (357)
84 1pui_A ENGB, probable GTP-bind 98.8 7.4E-09 2.5E-13 87.3 6.6 34 148-183 16-50 (210)
85 1htw_A HI0065; nucleotide-bind 98.8 1.9E-09 6.4E-14 89.5 2.1 51 147-210 20-71 (158)
86 2qag_B Septin-6, protein NEDD5 98.8 1.2E-08 4.2E-13 97.3 7.9 79 141-245 22-107 (427)
87 2npi_A Protein CLP1; CLP1-PCF1 98.7 5.2E-09 1.8E-13 100.8 4.8 43 152-206 130-175 (460)
88 2kjq_A DNAA-related protein; s 98.7 1.1E-08 3.7E-13 83.8 5.7 84 158-273 35-123 (149)
89 1z6g_A Guanylate kinase; struc 98.7 2.9E-09 9.9E-14 92.2 2.1 49 146-210 9-58 (218)
90 1s96_A Guanylate kinase, GMP k 98.7 3E-09 1E-13 92.7 1.6 39 158-208 15-55 (219)
91 1svi_A GTP-binding protein YSX 98.7 5.6E-08 1.9E-12 80.7 8.8 76 159-262 23-98 (195)
92 4aby_A DNA repair protein RECN 98.7 2E-09 6.8E-14 101.1 -0.2 39 234-275 317-356 (415)
93 4dhe_A Probable GTP-binding pr 98.7 4.9E-08 1.7E-12 83.0 8.4 74 159-260 29-106 (223)
94 3pqc_A Probable GTP-binding pr 98.7 1.5E-07 5.1E-12 77.6 10.8 73 160-261 24-96 (195)
95 3pih_A Uvrabc system protein A 98.7 2.2E-09 7.5E-14 111.1 -0.5 40 234-276 828-869 (916)
96 2i3b_A HCR-ntpase, human cance 98.6 2.1E-08 7.2E-13 85.4 5.1 37 159-209 1-37 (189)
97 4a74_A DNA repair and recombin 98.6 1.9E-08 6.4E-13 86.0 4.8 26 158-183 24-49 (231)
98 3iev_A GTP-binding protein ERA 98.6 1E-07 3.4E-12 86.8 9.5 24 160-183 11-34 (308)
99 2ewv_A Twitching motility prot 98.6 2.3E-08 7.8E-13 93.7 4.7 48 149-209 127-175 (372)
100 1ye8_A Protein THEP1, hypothet 98.6 4.1E-09 1.4E-13 88.9 -0.4 24 160-183 1-24 (178)
101 2vf7_A UVRA2, excinuclease ABC 98.6 3.4E-09 1.2E-13 108.8 -1.6 39 234-275 753-793 (842)
102 3thx_A DNA mismatch repair pro 98.6 2.9E-08 9.9E-13 103.0 5.2 106 151-275 653-785 (934)
103 3ec2_A DNA replication protein 98.6 4.8E-09 1.6E-13 87.3 -0.6 102 158-275 37-143 (180)
104 2w0m_A SSO2452; RECA, SSPF, un 98.6 5.6E-08 1.9E-12 82.7 6.1 114 149-275 11-168 (235)
105 2gj8_A MNME, tRNA modification 98.6 2.4E-07 8.1E-12 76.3 9.6 26 158-183 3-28 (172)
106 1ah9_A IF1, initiation factor 98.6 8.1E-08 2.8E-12 69.3 5.5 59 1-60 8-67 (71)
107 3e70_C DPA, signal recognition 98.6 4.8E-08 1.7E-12 90.1 5.4 42 158-211 128-169 (328)
108 1cr0_A DNA primase/helicase; R 98.6 1.1E-07 3.7E-12 85.4 7.6 36 148-183 23-59 (296)
109 3thx_B DNA mismatch repair pro 98.5 2E-08 6.8E-13 104.0 1.8 119 151-275 664-796 (918)
110 3jvv_A Twitching mobility prot 98.5 4.1E-08 1.4E-12 91.6 3.6 94 158-276 122-232 (356)
111 2ygr_A Uvrabc system protein A 98.5 2.2E-08 7.5E-13 103.9 1.2 39 234-275 886-926 (993)
112 2gza_A Type IV secretion syste 98.5 6.5E-08 2.2E-12 90.1 3.9 45 151-207 166-211 (361)
113 1wf3_A GTP-binding protein; GT 98.5 4.9E-07 1.7E-11 82.1 9.5 24 160-183 8-31 (301)
114 3i4o_A Translation initiation 98.5 1.5E-07 5.2E-12 69.2 4.8 59 1-60 16-75 (79)
115 2r6f_A Excinuclease ABC subuni 98.5 1.8E-08 6.3E-13 104.2 -0.2 39 234-275 868-908 (972)
116 2qnr_A Septin-2, protein NEDD5 98.5 4.6E-08 1.6E-12 89.0 2.5 77 142-243 6-86 (301)
117 3t34_A Dynamin-related protein 98.4 5.9E-07 2E-11 83.1 9.6 34 148-183 25-58 (360)
118 1hr0_W Translation initiation 98.4 7.2E-08 2.5E-12 69.6 2.4 59 1-60 9-68 (71)
119 3lxx_A GTPase IMAP family memb 98.4 4.6E-07 1.6E-11 78.6 8.0 24 160-183 30-53 (239)
120 1wb9_A DNA mismatch repair pro 98.4 1.7E-07 5.7E-12 96.0 5.9 107 158-275 606-730 (800)
121 3euj_A Chromosome partition pr 98.4 3.4E-08 1.2E-12 95.6 0.6 54 148-213 18-71 (483)
122 2oqk_A Putative translation in 98.4 2.4E-07 8.3E-12 73.2 4.5 65 1-67 34-99 (117)
123 2o8b_B DNA mismatch repair pro 98.4 1E-07 3.4E-12 99.9 2.8 117 147-275 769-912 (1022)
124 2obl_A ESCN; ATPase, hydrolase 98.4 1.1E-07 3.6E-12 88.5 2.5 58 141-211 52-111 (347)
125 3lxw_A GTPase IMAP family memb 98.4 6.2E-07 2.1E-11 78.8 7.3 25 159-183 21-45 (247)
126 2yhs_A FTSY, cell division pro 98.4 7.2E-08 2.5E-12 93.5 1.3 41 158-210 292-332 (503)
127 4a9a_A Ribosome-interacting GT 98.4 4.6E-07 1.6E-11 85.1 6.7 75 161-267 74-151 (376)
128 1ega_A Protein (GTP-binding pr 98.4 2.8E-07 9.7E-12 83.6 5.1 26 158-183 7-32 (301)
129 3t5d_A Septin-7; GTP-binding p 98.4 9E-07 3.1E-11 78.8 8.1 23 161-183 10-32 (274)
130 3qf7_A RAD50; ABC-ATPase, ATPa 98.3 2E-07 6.9E-12 86.9 3.5 41 232-275 303-345 (365)
131 1x3s_A RAS-related protein RAB 98.3 2.4E-07 8.4E-12 76.5 3.4 106 68-174 79-194 (195)
132 2v9p_A Replication protein E1; 98.3 7.9E-08 2.7E-12 87.9 0.4 43 139-182 106-149 (305)
133 2wji_A Ferrous iron transport 98.3 2.1E-06 7.2E-11 69.7 9.0 24 160-183 4-27 (165)
134 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 3.7E-07 1.3E-11 86.2 4.9 54 158-211 19-72 (392)
135 3k53_A Ferrous iron transport 98.3 2E-06 7E-11 76.2 9.2 24 160-183 4-27 (271)
136 2qag_C Septin-7; cell cycle, c 98.3 1.7E-07 5.7E-12 89.3 1.9 44 135-183 12-55 (418)
137 1zp6_A Hypothetical protein AT 98.3 4.2E-07 1.4E-11 75.7 4.0 25 158-182 8-32 (191)
138 3iby_A Ferrous iron transport 98.3 2.4E-06 8.1E-11 75.7 9.1 24 160-183 2-25 (256)
139 1f5n_A Interferon-induced guan 98.2 1.2E-06 4.1E-11 86.7 7.1 25 159-183 38-62 (592)
140 3t5g_A GTP-binding protein RHE 98.2 2.4E-07 8.3E-12 75.8 1.7 105 69-174 70-180 (181)
141 3b9q_A Chloroplast SRP recepto 98.2 2.8E-07 9.7E-12 83.9 2.1 42 158-211 99-140 (302)
142 4dcu_A GTP-binding protein ENG 98.2 1.7E-06 5.8E-11 82.7 7.6 57 159-244 23-82 (456)
143 1pzn_A RAD51, DNA repair and r 98.2 8.5E-07 2.9E-11 82.2 5.3 42 158-209 130-176 (349)
144 1sxj_E Activator 1 40 kDa subu 98.2 1.2E-06 4.1E-11 79.8 6.2 100 162-276 39-175 (354)
145 1lvg_A Guanylate kinase, GMP k 98.2 3.5E-07 1.2E-11 77.8 2.4 25 158-182 3-27 (198)
146 3def_A T7I23.11 protein; chlor 98.2 9.9E-07 3.4E-11 78.0 5.3 24 160-183 37-60 (262)
147 1ko7_A HPR kinase/phosphatase; 98.2 1.6E-06 5.4E-11 79.6 6.8 98 74-182 53-167 (314)
148 2cxx_A Probable GTP-binding pr 98.2 3.5E-06 1.2E-10 69.1 8.2 23 161-183 3-25 (190)
149 1n0w_A DNA repair protein RAD5 98.2 1.7E-06 5.9E-11 74.3 6.5 50 149-208 9-68 (243)
150 2wjg_A FEOB, ferrous iron tran 98.2 6.8E-06 2.3E-10 67.5 9.8 23 160-182 8-30 (188)
151 3i8s_A Ferrous iron transport 98.2 5.4E-06 1.8E-10 74.0 9.8 24 160-183 4-27 (274)
152 1ewq_A DNA mismatch repair pro 98.2 5E-07 1.7E-11 92.0 3.2 25 159-183 576-600 (765)
153 1mky_A Probable GTP-binding pr 98.2 1.5E-06 5E-11 82.8 6.1 23 161-183 3-25 (439)
154 2hjg_A GTP-binding protein ENG 98.2 2.7E-06 9.3E-11 80.8 7.7 56 160-244 4-62 (436)
155 2www_A Methylmalonic aciduria 98.2 7.2E-07 2.5E-11 82.7 3.2 38 159-208 74-111 (349)
156 2qtf_A Protein HFLX, GTP-bindi 98.2 5.8E-06 2E-10 77.1 9.2 23 161-183 181-203 (364)
157 1h65_A Chloroplast outer envel 98.2 1.6E-06 5.5E-11 76.9 5.2 24 160-183 40-63 (270)
158 3a1s_A Iron(II) transport prot 98.2 5.8E-06 2E-10 73.2 8.7 24 160-183 6-29 (258)
159 3b1v_A Ferrous iron uptake tra 98.1 5.9E-06 2E-10 74.0 8.5 24 160-183 4-27 (272)
160 2xtp_A GTPase IMAP family memb 98.1 5.9E-06 2E-10 72.4 8.3 25 159-183 22-46 (260)
161 3a00_A Guanylate kinase, GMP k 98.1 7.7E-07 2.6E-11 74.5 2.4 25 159-183 1-25 (186)
162 1znw_A Guanylate kinase, GMP k 98.1 9.3E-07 3.2E-11 75.3 2.6 26 158-183 19-44 (207)
163 2oap_1 GSPE-2, type II secreti 98.1 1.4E-06 4.8E-11 84.9 4.2 47 150-208 250-297 (511)
164 2og2_A Putative signal recogni 98.1 7.5E-07 2.6E-11 83.2 2.1 42 158-211 156-197 (359)
165 2jeo_A Uridine-cytidine kinase 98.1 8.8E-07 3E-11 77.5 2.3 39 144-182 9-48 (245)
166 1jwy_B Dynamin A GTPase domain 98.1 9.1E-06 3.1E-10 72.9 9.0 25 159-183 24-48 (315)
167 2nzj_A GTP-binding protein REM 98.1 3.7E-06 1.3E-10 67.9 5.6 23 161-183 6-28 (175)
168 1tf7_A KAIC; homohexamer, hexa 98.1 3.5E-07 1.2E-11 89.0 -0.6 101 158-275 280-417 (525)
169 1p9r_A General secretion pathw 98.1 5.4E-07 1.8E-11 85.8 0.6 48 149-209 158-205 (418)
170 2qu8_A Putative nucleolar GTP- 98.1 7.9E-06 2.7E-10 70.0 7.8 25 159-183 29-53 (228)
171 2ohf_A Protein OLA1, GTP-bindi 98.1 2.9E-06 1E-10 80.1 5.3 78 158-245 21-98 (396)
172 3gee_A MNME, tRNA modification 98.1 1.1E-06 3.8E-11 84.9 2.5 25 159-183 233-257 (476)
173 3lnc_A Guanylate kinase, GMP k 98.1 1.1E-06 3.8E-11 75.9 2.2 35 149-183 16-52 (231)
174 3c8u_A Fructokinase; YP_612366 98.1 1E-06 3.5E-11 75.0 1.7 39 158-208 21-62 (208)
175 2f1r_A Molybdopterin-guanine d 98.0 5.4E-07 1.9E-11 75.5 -0.1 41 160-212 3-46 (171)
176 1z0j_A RAB-22, RAS-related pro 98.0 5.3E-06 1.8E-10 66.5 5.8 24 160-183 7-30 (170)
177 1ek0_A Protein (GTP-binding pr 98.0 5.1E-06 1.8E-10 66.4 5.7 24 160-183 4-27 (170)
178 1sq5_A Pantothenate kinase; P- 98.0 1.4E-06 4.9E-11 79.1 2.4 39 158-208 79-122 (308)
179 1jal_A YCHF protein; nucleotid 98.0 3.5E-06 1.2E-10 78.7 5.1 76 159-244 2-77 (363)
180 3tw8_B RAS-related protein RAB 98.0 7.8E-06 2.7E-10 66.2 6.3 24 160-183 10-33 (181)
181 2dyk_A GTP-binding protein; GT 98.0 5.9E-06 2E-10 65.7 5.4 23 161-183 3-25 (161)
182 1wms_A RAB-9, RAB9, RAS-relate 98.0 6.5E-06 2.2E-10 66.7 5.6 24 160-183 8-31 (177)
183 3lda_A DNA repair protein RAD5 98.0 9.5E-06 3.3E-10 76.7 7.5 32 149-180 163-199 (400)
184 2cvh_A DNA repair and recombin 98.0 1.2E-05 4.1E-10 67.8 7.5 33 149-181 8-42 (220)
185 2p67_A LAO/AO transport system 98.0 2.4E-06 8.1E-11 78.8 3.2 35 148-182 44-79 (341)
186 3tkl_A RAS-related protein RAB 98.0 4.6E-06 1.6E-10 68.8 4.6 105 69-174 81-194 (196)
187 3tr0_A Guanylate kinase, GMP k 98.0 2.3E-06 8E-11 71.8 2.6 26 158-183 6-31 (205)
188 4bas_A ADP-ribosylation factor 98.0 2.8E-05 9.6E-10 64.2 9.1 90 67-157 77-183 (199)
189 1xzp_A Probable tRNA modificat 98.0 1.3E-06 4.4E-11 84.6 0.9 25 159-183 243-267 (482)
190 2aka_B Dynamin-1; fusion prote 98.0 4.2E-05 1.4E-09 67.9 10.6 25 159-183 26-50 (299)
191 3q72_A GTP-binding protein RAD 98.0 8E-06 2.7E-10 65.4 5.4 24 160-183 3-26 (166)
192 1z2a_A RAS-related protein RAB 98.0 7.7E-06 2.6E-10 65.4 5.2 23 161-183 7-29 (168)
193 1kgd_A CASK, peripheral plasma 98.0 2.8E-06 9.6E-11 70.7 2.6 27 157-183 3-29 (180)
194 2bbw_A Adenylate kinase 4, AK4 98.0 1.9E-06 6.6E-11 75.1 1.6 37 158-206 26-65 (246)
195 1r2q_A RAS-related protein RAB 98.0 9.8E-06 3.3E-10 64.8 5.7 23 160-182 7-29 (170)
196 1kao_A RAP2A; GTP-binding prot 98.0 9.2E-06 3.1E-10 64.6 5.5 24 160-183 4-27 (167)
197 2h17_A ADP-ribosylation factor 97.9 4E-05 1.4E-09 62.8 9.5 90 67-157 79-177 (181)
198 1e69_A Chromosome segregation 97.9 2.7E-05 9.3E-10 70.9 9.2 38 235-275 244-282 (322)
199 2fg5_A RAB-22B, RAS-related pr 97.9 1E-05 3.5E-10 67.1 5.8 25 159-183 23-47 (192)
200 1f6b_A SAR1; gtpases, N-termin 97.9 7.4E-06 2.5E-10 68.8 5.0 35 149-183 15-49 (198)
201 1oix_A RAS-related protein RAB 97.9 4E-06 1.4E-10 70.0 3.2 24 160-183 30-53 (191)
202 2erx_A GTP-binding protein DI- 97.9 8.9E-06 3E-10 65.1 5.1 24 160-183 4-27 (172)
203 2x2e_A Dynamin-1; nitration, h 97.9 4.5E-05 1.5E-09 70.3 10.5 25 159-183 31-55 (353)
204 1g16_A RAS-related protein SEC 97.9 8.7E-06 3E-10 65.2 5.0 23 161-183 5-27 (170)
205 1z0f_A RAB14, member RAS oncog 97.9 1E-05 3.5E-10 65.3 5.5 24 160-183 16-39 (179)
206 1qhl_A Protein (cell division 97.9 7E-07 2.4E-11 78.3 -1.8 39 160-210 28-66 (227)
207 1nlf_A Regulatory protein REPA 97.9 3.8E-05 1.3E-09 68.1 9.5 25 158-182 29-53 (279)
208 1z08_A RAS-related protein RAB 97.9 1.2E-05 4.1E-10 64.5 5.6 23 161-183 8-30 (170)
209 2y8e_A RAB-protein 6, GH09086P 97.9 1.3E-05 4.3E-10 64.8 5.8 23 160-182 15-37 (179)
210 2g6b_A RAS-related protein RAB 97.9 1.3E-05 4.3E-10 65.1 5.8 24 160-183 11-34 (180)
211 3t5g_A GTP-binding protein RHE 97.9 1.6E-05 5.4E-10 64.8 6.4 22 160-181 7-28 (181)
212 2il1_A RAB12; G-protein, GDP, 97.9 1.4E-05 4.9E-10 66.3 6.1 24 160-183 27-50 (192)
213 3geh_A MNME, tRNA modification 97.9 2.3E-06 7.8E-11 82.4 1.2 25 158-182 223-247 (462)
214 1nij_A Hypothetical protein YJ 97.9 3.8E-06 1.3E-10 76.6 2.6 48 160-211 5-52 (318)
215 1udx_A The GTP-binding protein 97.9 8.7E-06 3E-10 77.4 4.9 33 151-183 148-181 (416)
216 1m2o_B GTP-binding protein SAR 97.9 1E-05 3.4E-10 67.4 4.8 34 150-183 14-47 (190)
217 2atx_A Small GTP binding prote 97.9 4.9E-05 1.7E-09 62.7 9.0 92 65-157 78-187 (194)
218 3tkl_A RAS-related protein RAB 97.9 1.4E-05 4.8E-10 65.8 5.6 24 160-183 17-40 (196)
219 1zj6_A ADP-ribosylation factor 97.9 4.1E-05 1.4E-09 63.0 8.4 89 68-157 75-172 (187)
220 1u8z_A RAS-related protein RAL 97.9 1.5E-05 5E-10 63.4 5.5 24 160-183 5-28 (168)
221 3clv_A RAB5 protein, putative; 97.9 1.2E-05 4.3E-10 65.9 5.1 24 160-183 8-31 (208)
222 2oil_A CATX-8, RAS-related pro 97.9 2E-05 6.7E-10 65.1 6.3 24 160-183 26-49 (193)
223 3ney_A 55 kDa erythrocyte memb 97.9 5.8E-06 2E-10 70.9 3.1 27 157-183 17-43 (197)
224 1c1y_A RAS-related protein RAP 97.9 2.4E-05 8.1E-10 62.4 6.5 23 160-182 4-26 (167)
225 2bdt_A BH3686; alpha-beta prot 97.9 4E-06 1.4E-10 69.8 2.0 23 159-181 2-24 (189)
226 2bme_A RAB4A, RAS-related prot 97.9 1.5E-05 5.2E-10 65.1 5.4 24 160-183 11-34 (186)
227 1zbd_A Rabphilin-3A; G protein 97.9 2.2E-05 7.5E-10 65.4 6.4 23 161-183 10-32 (203)
228 2j0v_A RAC-like GTP-binding pr 97.9 3.4E-05 1.2E-09 64.7 7.7 93 65-157 69-174 (212)
229 2g6b_A RAS-related protein RAB 97.9 2.2E-05 7.5E-10 63.6 6.3 88 69-157 76-168 (180)
230 1lw7_A Transcriptional regulat 97.9 2.2E-06 7.5E-11 79.5 0.2 35 159-205 170-208 (365)
231 2efe_B Small GTP-binding prote 97.9 3.4E-05 1.2E-09 62.6 7.4 89 68-157 76-169 (181)
232 3q85_A GTP-binding protein REM 97.9 9E-06 3.1E-10 65.3 3.8 23 161-183 4-26 (169)
233 1fzq_A ADP-ribosylation factor 97.9 1.5E-05 5.3E-10 65.6 5.3 25 159-183 16-40 (181)
234 2bcg_Y Protein YP2, GTP-bindin 97.8 2E-05 6.9E-10 65.9 6.1 24 160-183 9-32 (206)
235 4e22_A Cytidylate kinase; P-lo 97.8 4.1E-06 1.4E-10 73.8 1.8 40 158-209 26-76 (252)
236 1z06_A RAS-related protein RAB 97.8 1.7E-05 5.8E-10 65.4 5.5 24 160-183 21-44 (189)
237 2h57_A ADP-ribosylation factor 97.8 3.5E-05 1.2E-09 63.5 7.5 90 67-157 81-181 (190)
238 2efe_B Small GTP-binding prote 97.8 1.8E-05 6E-10 64.3 5.5 24 160-183 13-36 (181)
239 1vg8_A RAS-related protein RAB 97.8 1.8E-05 6.1E-10 65.9 5.6 24 160-183 9-32 (207)
240 2f9l_A RAB11B, member RAS onco 97.8 6.5E-06 2.2E-10 68.9 2.9 23 161-183 7-29 (199)
241 1x3s_A RAS-related protein RAB 97.8 1.9E-05 6.5E-10 64.9 5.6 25 159-183 15-39 (195)
242 4dsu_A GTPase KRAS, isoform 2B 97.8 1.8E-05 6.3E-10 64.5 5.5 23 161-183 6-28 (189)
243 2gf9_A RAS-related protein RAB 97.8 2.8E-05 9.6E-10 64.1 6.6 89 68-157 86-179 (189)
244 4djt_A GTP-binding nuclear pro 97.8 1.8E-05 6.3E-10 66.7 5.5 24 160-183 12-35 (218)
245 2ce2_X GTPase HRAS; signaling 97.8 2.1E-05 7.3E-10 62.2 5.6 23 161-183 5-27 (166)
246 1upt_A ARL1, ADP-ribosylation 97.8 6.6E-05 2.2E-09 60.1 8.6 89 68-157 66-163 (171)
247 2gf9_A RAS-related protein RAB 97.8 2E-05 6.9E-10 65.0 5.6 24 160-183 23-46 (189)
248 3cph_A RAS-related protein SEC 97.8 1.8E-05 6.1E-10 66.2 5.3 25 159-183 20-44 (213)
249 3bc1_A RAS-related protein RAB 97.8 2.8E-05 9.5E-10 63.5 6.2 24 160-183 12-35 (195)
250 3cph_A RAS-related protein SEC 97.8 2.5E-05 8.6E-10 65.3 6.1 89 68-157 84-176 (213)
251 4eun_A Thermoresistant glucoki 97.8 6.3E-06 2.2E-10 69.6 2.3 25 158-182 28-52 (200)
252 2ged_A SR-beta, signal recogni 97.8 9.8E-06 3.4E-10 66.9 3.4 25 159-183 48-72 (193)
253 3uie_A Adenylyl-sulfate kinase 97.8 5.2E-06 1.8E-10 70.1 1.7 46 151-209 16-64 (200)
254 2qpt_A EH domain-containing pr 97.8 1.7E-05 5.9E-10 77.8 5.7 24 160-183 66-89 (550)
255 1sky_E F1-ATPase, F1-ATP synth 97.8 2.8E-07 9.5E-12 88.9 -7.0 101 149-273 141-252 (473)
256 2j69_A Bacterial dynamin-like 97.8 2.6E-05 9E-10 78.5 7.1 26 158-183 68-93 (695)
257 1ky3_A GTP-binding protein YPT 97.8 1.4E-05 4.8E-10 64.7 4.2 24 160-183 9-32 (182)
258 1ksh_A ARF-like protein 2; sma 97.8 5E-05 1.7E-09 62.2 7.5 89 68-157 77-174 (186)
259 2o52_A RAS-related protein RAB 97.8 2.3E-05 7.9E-10 65.6 5.5 24 160-183 26-49 (200)
260 2qag_A Septin-2, protein NEDD5 97.8 6.3E-06 2.2E-10 76.6 2.1 23 161-183 39-61 (361)
261 2a5j_A RAS-related protein RAB 97.8 2E-05 6.8E-10 65.2 4.9 24 160-183 22-45 (191)
262 2fn4_A P23, RAS-related protei 97.8 3.4E-05 1.2E-09 62.3 6.2 23 160-182 10-32 (181)
263 2fg5_A RAB-22B, RAS-related pr 97.8 4.1E-05 1.4E-09 63.5 6.8 90 67-157 86-180 (192)
264 2hxs_A RAB-26, RAS-related pro 97.8 2.2E-05 7.6E-10 63.5 5.1 23 160-182 7-29 (178)
265 3t1o_A Gliding protein MGLA; G 97.8 1.9E-05 6.5E-10 64.8 4.7 89 69-157 90-186 (198)
266 1upt_A ARL1, ADP-ribosylation 97.8 1.9E-05 6.4E-10 63.4 4.6 24 159-182 7-30 (171)
267 2bov_A RAla, RAS-related prote 97.8 2.6E-05 8.8E-10 64.8 5.5 24 160-183 15-38 (206)
268 3nwj_A ATSK2; P loop, shikimat 97.8 8E-06 2.7E-10 72.4 2.5 45 138-182 21-71 (250)
269 1r8s_A ADP-ribosylation factor 97.8 6.1E-05 2.1E-09 60.0 7.5 88 69-157 60-156 (164)
270 2y8e_A RAB-protein 6, GH09086P 97.8 2.8E-05 9.7E-10 62.7 5.6 90 67-157 77-171 (179)
271 2fu5_C RAS-related protein RAB 97.8 3.6E-05 1.2E-09 62.8 6.2 89 68-157 72-165 (183)
272 2a9k_A RAS-related protein RAL 97.8 2.9E-05 9.8E-10 63.1 5.5 25 159-183 18-42 (187)
273 3aez_A Pantothenate kinase; tr 97.8 5.5E-06 1.9E-10 75.7 1.2 26 158-183 89-114 (312)
274 2fh5_B SR-beta, signal recogni 97.8 3.4E-05 1.2E-09 64.9 6.1 24 159-182 7-30 (214)
275 2f7s_A C25KG, RAS-related prot 97.8 7.6E-05 2.6E-09 62.8 8.3 24 160-183 26-49 (217)
276 2dby_A GTP-binding protein; GD 97.8 2.4E-05 8.4E-10 73.1 5.6 22 161-182 3-24 (368)
277 3asz_A Uridine kinase; cytidin 97.8 8.9E-06 3E-10 68.8 2.4 26 158-183 5-30 (211)
278 1z0f_A RAB14, member RAS oncog 97.8 2.6E-05 8.8E-10 62.9 5.1 88 69-157 80-172 (179)
279 2p5s_A RAS and EF-hand domain 97.8 2.2E-05 7.6E-10 65.5 4.8 25 159-183 28-52 (199)
280 3bc1_A RAS-related protein RAB 97.8 3.1E-05 1.1E-09 63.2 5.5 88 69-157 86-179 (195)
281 2lkc_A Translation initiation 97.7 2.2E-05 7.6E-10 63.5 4.6 26 158-183 7-32 (178)
282 2gco_A H9, RHO-related GTP-bin 97.7 3.4E-05 1.1E-09 64.5 5.8 90 67-157 87-194 (201)
283 1ksh_A ARF-like protein 2; sma 97.7 3.1E-05 1.1E-09 63.4 5.5 24 159-182 18-41 (186)
284 2q3h_A RAS homolog gene family 97.7 9E-05 3.1E-09 61.5 8.4 92 65-157 80-189 (201)
285 1wxq_A GTP-binding protein; st 97.7 2E-05 6.8E-10 74.3 4.8 23 161-183 2-24 (397)
286 2x77_A ADP-ribosylation factor 97.7 0.00011 3.7E-09 60.4 8.7 89 68-157 81-178 (189)
287 3dz8_A RAS-related protein RAB 97.7 3.6E-05 1.2E-09 63.6 5.8 24 160-183 24-47 (191)
288 3con_A GTPase NRAS; structural 97.7 3.3E-05 1.1E-09 63.5 5.5 25 159-183 21-45 (190)
289 3c5h_A Glucocorticoid receptor 97.7 0.00011 3.8E-09 64.5 9.2 82 76-157 162-249 (255)
290 1nrj_B SR-beta, signal recogni 97.7 5.4E-05 1.8E-09 63.8 6.9 25 159-183 12-36 (218)
291 3gj0_A GTP-binding nuclear pro 97.7 1.9E-05 6.5E-10 67.0 4.0 22 160-181 16-37 (221)
292 1g16_A RAS-related protein SEC 97.7 4.4E-05 1.5E-09 61.0 6.0 89 68-157 67-159 (170)
293 1z08_A RAS-related protein RAB 97.7 4E-05 1.4E-09 61.3 5.8 88 69-157 71-163 (170)
294 1zbd_A Rabphilin-3A; G protein 97.7 5.4E-05 1.8E-09 63.0 6.7 89 68-157 72-165 (203)
295 2nzj_A GTP-binding protein REM 97.7 6.4E-05 2.2E-09 60.4 6.9 86 71-157 72-163 (175)
296 2zej_A Dardarin, leucine-rich 97.7 3.4E-05 1.2E-09 63.6 5.4 23 160-182 3-25 (184)
297 3bwd_D RAC-like GTP-binding pr 97.7 3E-05 1E-09 62.9 4.9 92 65-157 68-175 (182)
298 1moz_A ARL1, ADP-ribosylation 97.7 2.8E-05 9.5E-10 63.3 4.7 24 159-182 18-41 (183)
299 1moz_A ARL1, ADP-ribosylation 97.7 0.00012 4.1E-09 59.5 8.5 88 69-157 78-174 (183)
300 3tw8_B RAS-related protein RAB 97.7 7E-05 2.4E-09 60.4 7.1 89 68-157 73-165 (181)
301 1zu4_A FTSY; GTPase, signal re 97.7 7.5E-06 2.6E-10 75.1 1.3 41 158-210 104-144 (320)
302 3oes_A GTPase rhebl1; small GT 97.7 5.1E-05 1.8E-09 63.3 6.3 25 159-183 24-48 (201)
303 2ew1_A RAS-related protein RAB 97.7 4.2E-05 1.4E-09 64.6 5.8 23 160-182 27-49 (201)
304 3q5d_A Atlastin-1; G protein, 97.7 2E-05 6.9E-10 75.5 4.3 23 160-182 68-90 (447)
305 1z2a_A RAS-related protein RAB 97.7 3.9E-05 1.3E-09 61.2 5.3 89 68-157 69-161 (168)
306 1c1y_A RAS-related protein RAP 97.7 5E-05 1.7E-09 60.5 5.9 88 69-157 67-161 (167)
307 2j41_A Guanylate kinase; GMP, 97.7 1.6E-05 5.3E-10 66.6 2.9 26 158-183 5-30 (207)
308 3kkq_A RAS-related protein M-R 97.7 7.8E-05 2.7E-09 60.7 7.0 89 68-157 81-176 (183)
309 2b6h_A ADP-ribosylation factor 97.7 8.5E-05 2.9E-09 61.8 7.4 88 69-157 89-185 (192)
310 1z0j_A RAB-22, RAS-related pro 97.7 8.1E-05 2.8E-09 59.4 7.0 92 65-157 67-163 (170)
311 1r2q_A RAS-related protein RAB 97.7 3.8E-05 1.3E-09 61.3 5.0 89 68-157 70-163 (170)
312 2a5j_A RAS-related protein RAB 97.7 5.3E-05 1.8E-09 62.6 6.0 89 68-157 85-178 (191)
313 2h57_A ADP-ribosylation factor 97.7 4.7E-05 1.6E-09 62.7 5.6 24 159-182 21-44 (190)
314 2gf0_A GTP-binding protein DI- 97.7 2.2E-05 7.7E-10 64.8 3.7 24 160-183 9-32 (199)
315 2dr3_A UPF0273 protein PH0284; 97.7 4.8E-05 1.6E-09 65.1 5.8 23 158-180 22-44 (247)
316 2ce2_X GTPase HRAS; signaling 97.7 7.2E-05 2.5E-09 59.1 6.5 88 69-157 67-159 (166)
317 1zd9_A ADP-ribosylation factor 97.7 5.5E-05 1.9E-09 62.4 5.9 88 69-157 83-179 (188)
318 3q72_A GTP-binding protein RAD 97.7 0.00011 3.9E-09 58.5 7.5 88 69-157 65-158 (166)
319 3tau_A Guanylate kinase, GMP k 97.7 1.8E-05 6.1E-10 67.4 2.8 26 158-183 7-32 (208)
320 2h17_A ADP-ribosylation factor 97.7 4.5E-05 1.5E-09 62.5 5.1 25 159-183 21-45 (181)
321 3cpj_B GTP-binding protein YPT 97.6 5E-05 1.7E-09 64.6 5.5 24 160-183 14-37 (223)
322 3kkq_A RAS-related protein M-R 97.6 5.3E-05 1.8E-09 61.7 5.4 25 159-183 18-42 (183)
323 2bcg_Y Protein YP2, GTP-bindin 97.6 0.00012 4.1E-09 61.1 7.7 90 67-157 71-165 (206)
324 3reg_A RHO-like small GTPase; 97.6 5.2E-05 1.8E-09 62.7 5.4 92 65-157 83-182 (194)
325 4bas_A ADP-ribosylation factor 97.6 6.7E-05 2.3E-09 61.8 6.0 25 159-183 17-41 (199)
326 1m7b_A RND3/RHOE small GTP-bin 97.6 2.7E-05 9.1E-10 64.0 3.5 24 160-183 8-31 (184)
327 2fu5_C RAS-related protein RAB 97.6 2.9E-05 9.8E-10 63.3 3.6 23 160-182 9-31 (183)
328 2vp4_A Deoxynucleoside kinase; 97.6 2.2E-05 7.5E-10 67.9 3.0 25 158-182 19-43 (230)
329 2a9k_A RAS-related protein RAL 97.6 2.7E-05 9.3E-10 63.2 3.4 88 69-157 82-175 (187)
330 3sjy_A Translation initiation 97.6 0.00024 8.3E-09 66.6 10.3 85 72-157 94-186 (403)
331 1u8z_A RAS-related protein RAL 97.6 4.6E-05 1.6E-09 60.5 4.5 88 69-157 68-161 (168)
332 3l0i_B RAS-related protein RAB 97.6 1.6E-05 5.6E-10 66.3 1.9 24 160-183 34-57 (199)
333 2fv8_A H6, RHO-related GTP-bin 97.6 7.1E-05 2.4E-09 62.8 5.9 25 159-183 25-49 (207)
334 1ls1_A Signal recognition part 97.6 2.7E-05 9.2E-10 70.4 3.4 40 158-209 97-136 (295)
335 3con_A GTPase NRAS; structural 97.6 0.0001 3.6E-09 60.4 6.7 88 69-157 85-177 (190)
336 1rz3_A Hypothetical protein rb 97.6 1.5E-05 5.3E-10 67.4 1.7 25 158-182 21-45 (201)
337 1ek0_A Protein (GTP-binding pr 97.6 6.2E-05 2.1E-09 60.0 5.2 89 68-157 67-163 (170)
338 3clv_A RAB5 protein, putative; 97.6 0.00011 3.8E-09 60.1 6.9 88 69-157 109-198 (208)
339 2x77_A ADP-ribosylation factor 97.6 6.6E-05 2.2E-09 61.7 5.4 24 159-182 22-45 (189)
340 1r8s_A ADP-ribosylation factor 97.6 6E-05 2.1E-09 60.0 5.0 22 161-182 2-23 (164)
341 4dhe_A Probable GTP-binding pr 97.6 0.00026 8.8E-09 59.6 9.2 82 74-157 113-205 (223)
342 1mh1_A RAC1; GTP-binding, GTPa 97.6 4.7E-05 1.6E-09 61.9 4.4 89 68-157 68-174 (186)
343 1mh1_A RAC1; GTP-binding, GTPa 97.6 4.1E-05 1.4E-09 62.2 4.0 23 160-182 6-28 (186)
344 2oil_A CATX-8, RAS-related pro 97.6 6.7E-05 2.3E-09 61.9 5.3 90 67-157 88-182 (193)
345 3qq5_A Small GTP-binding prote 97.6 2.7E-05 9.2E-10 74.1 3.2 24 160-183 35-58 (423)
346 3r7w_A Gtpase1, GTP-binding pr 97.6 4.8E-05 1.6E-09 68.9 4.7 24 159-182 3-26 (307)
347 2hxs_A RAB-26, RAS-related pro 97.6 7.8E-05 2.7E-09 60.2 5.5 88 69-157 72-167 (178)
348 1zd9_A ADP-ribosylation factor 97.6 6E-05 2E-09 62.2 4.9 25 159-183 22-46 (188)
349 3vaa_A Shikimate kinase, SK; s 97.6 3.1E-05 1.1E-09 65.2 3.2 36 147-182 12-48 (199)
350 2hup_A RAS-related protein RAB 97.6 7.1E-05 2.4E-09 62.7 5.4 88 69-157 94-187 (201)
351 3q85_A GTP-binding protein REM 97.6 0.00011 3.7E-09 58.8 6.3 86 71-157 70-161 (169)
352 2yc2_C IFT27, small RAB-relate 97.6 5.9E-05 2E-09 62.5 4.8 87 70-157 90-186 (208)
353 3llu_A RAS-related GTP-binding 97.6 0.00012 4E-09 60.9 6.6 25 159-183 20-44 (196)
354 1zj6_A ADP-ribosylation factor 97.6 6.6E-05 2.2E-09 61.7 5.0 26 158-183 15-40 (187)
355 1knq_A Gluconate kinase; ALFA/ 97.6 2.1E-05 7.2E-10 64.4 1.9 25 158-182 7-31 (175)
356 3kta_A Chromosome segregation 97.6 6.5E-05 2.2E-09 61.8 4.9 29 155-183 22-50 (182)
357 3cbq_A GTP-binding protein REM 97.6 6.7E-05 2.3E-09 62.7 5.0 23 160-182 24-46 (195)
358 3t1o_A Gliding protein MGLA; G 97.6 8.2E-05 2.8E-09 60.9 5.4 24 160-183 15-38 (198)
359 3reg_A RHO-like small GTPase; 97.6 6.5E-05 2.2E-09 62.1 4.8 25 159-183 23-47 (194)
360 2hup_A RAS-related protein RAB 97.5 7E-05 2.4E-09 62.8 4.9 23 160-182 30-52 (201)
361 2bov_A RAla, RAS-related prote 97.5 9.7E-05 3.3E-09 61.2 5.8 88 69-157 78-171 (206)
362 2j1l_A RHO-related GTP-binding 97.5 9.7E-05 3.3E-09 62.5 5.8 24 160-183 35-58 (214)
363 1ky3_A GTP-binding protein YPT 97.5 0.00022 7.4E-09 57.5 7.7 87 70-157 75-172 (182)
364 2fn4_A P23, RAS-related protei 97.5 5.5E-05 1.9E-09 61.1 4.1 89 68-157 72-166 (181)
365 2gco_A H9, RHO-related GTP-bin 97.5 5.1E-05 1.7E-09 63.4 4.0 24 160-183 26-49 (201)
366 2f7s_A C25KG, RAS-related prot 97.5 5E-05 1.7E-09 63.9 4.0 87 70-157 101-193 (217)
367 2lkc_A Translation initiation 97.5 0.0003 1E-08 56.6 8.6 86 70-157 72-165 (178)
368 1m2o_B GTP-binding protein SAR 97.5 0.00032 1.1E-08 58.1 8.9 88 69-157 83-186 (190)
369 4gzl_A RAS-related C3 botulinu 97.5 7.6E-05 2.6E-09 62.7 5.1 92 65-157 90-199 (204)
370 3dz8_A RAS-related protein RAB 97.5 8.4E-05 2.9E-09 61.4 5.2 87 70-157 89-180 (191)
371 2iwr_A Centaurin gamma 1; ANK 97.5 3.8E-05 1.3E-09 62.4 3.0 24 160-183 8-31 (178)
372 2yc2_C IFT27, small RAB-relate 97.5 3.4E-05 1.2E-09 64.0 2.8 23 160-182 21-43 (208)
373 3q3j_B RHO-related GTP-binding 97.5 7.2E-05 2.5E-09 63.5 4.9 93 65-157 87-197 (214)
374 3oes_A GTPase rhebl1; small GT 97.5 0.00015 5.3E-09 60.3 6.9 90 67-157 86-181 (201)
375 3kl4_A SRP54, signal recogniti 97.5 2.9E-05 1E-09 74.1 2.5 25 158-182 96-120 (433)
376 1kao_A RAP2A; GTP-binding prot 97.5 4.4E-05 1.5E-09 60.6 3.2 87 70-157 68-160 (167)
377 2atv_A RERG, RAS-like estrogen 97.5 0.00011 3.6E-09 61.0 5.7 25 159-183 28-52 (196)
378 4djt_A GTP-binding nuclear pro 97.5 0.00026 8.8E-09 59.5 8.2 89 68-157 76-169 (218)
379 4dsu_A GTPase KRAS, isoform 2B 97.5 0.00016 5.3E-09 58.8 6.5 89 68-157 67-160 (189)
380 2fv8_A H6, RHO-related GTP-bin 97.5 8.4E-05 2.9E-09 62.3 5.0 90 67-157 87-194 (207)
381 2q3h_A RAS homolog gene family 97.5 0.00015 5.1E-09 60.1 6.5 25 158-182 19-43 (201)
382 3bwd_D RAC-like GTP-binding pr 97.5 4.6E-05 1.6E-09 61.8 3.1 24 159-182 8-31 (182)
383 1vg8_A RAS-related protein RAB 97.5 0.00017 5.9E-09 59.8 6.7 90 67-157 71-169 (207)
384 3cpj_B GTP-binding protein YPT 97.5 8.1E-05 2.8E-09 63.3 4.6 90 67-157 76-170 (223)
385 3gj0_A GTP-binding nuclear pro 97.5 4E-05 1.4E-09 65.0 2.6 89 68-157 79-169 (221)
386 1gwn_A RHO-related GTP-binding 97.5 5.4E-05 1.8E-09 64.0 3.3 24 160-183 29-52 (205)
387 2o52_A RAS-related protein RAB 97.5 8.1E-05 2.8E-09 62.2 4.4 89 68-157 89-182 (200)
388 4gzl_A RAS-related C3 botulinu 97.5 0.0001 3.5E-09 61.8 4.9 25 158-182 29-53 (204)
389 2cjw_A GTP-binding protein GEM 97.5 8.6E-05 2.9E-09 61.9 4.4 55 161-242 8-65 (192)
390 1f6b_A SAR1; gtpases, N-termin 97.5 0.0005 1.7E-08 57.4 9.0 88 69-157 85-193 (198)
391 2b6h_A ADP-ribosylation factor 97.4 0.00015 5.2E-09 60.2 5.6 25 158-182 28-52 (192)
392 1in4_A RUVB, holliday junction 97.4 1.3E-05 4.5E-10 73.3 -1.1 59 143-209 27-93 (334)
393 3iev_A GTP-binding protein ERA 97.4 0.00019 6.4E-09 65.0 6.5 86 71-157 87-176 (308)
394 3tqc_A Pantothenate kinase; bi 97.4 3.7E-05 1.3E-09 70.6 1.8 42 142-183 68-116 (321)
395 2erx_A GTP-binding protein DI- 97.4 0.0001 3.5E-09 58.8 4.2 88 69-157 67-161 (172)
396 1lnz_A SPO0B-associated GTP-bi 97.4 5.5E-05 1.9E-09 69.9 2.9 22 161-182 160-181 (342)
397 2p5s_A RAS and EF-hand domain 97.4 0.00012 4E-09 61.0 4.7 87 70-157 94-191 (199)
398 3th5_A RAS-related C3 botulinu 96.5 2.1E-05 7.2E-10 65.8 0.0 90 68-157 93-199 (204)
399 2g3y_A GTP-binding protein GEM 97.4 0.00017 5.9E-09 61.7 5.8 24 160-183 38-61 (211)
400 2il1_A RAB12; G-protein, GDP, 97.4 0.00011 3.7E-09 60.9 4.4 88 69-157 91-184 (192)
401 2gf0_A GTP-binding protein DI- 97.4 0.00015 5.1E-09 59.7 5.1 88 69-157 72-165 (199)
402 3ihw_A Centg3; RAS, centaurin, 97.4 7.5E-05 2.6E-09 61.8 3.3 25 159-183 20-44 (184)
403 1kag_A SKI, shikimate kinase I 97.4 4.7E-05 1.6E-09 62.0 1.9 25 159-183 4-28 (173)
404 2e87_A Hypothetical protein PH 97.4 0.00099 3.4E-08 61.3 11.1 84 74-157 244-330 (357)
405 2dy1_A Elongation factor G; tr 97.4 8E-05 2.7E-09 74.6 3.9 26 158-183 8-33 (665)
406 2x8a_A Nuclear valosin-contain 97.4 3.4E-05 1.2E-09 68.9 1.0 48 147-209 33-80 (274)
407 3c5c_A RAS-like protein 12; GD 97.4 0.0001 3.4E-09 61.0 3.8 24 159-182 21-44 (187)
408 2atx_A Small GTP binding prote 97.4 0.00013 4.4E-09 60.2 4.4 23 160-182 19-41 (194)
409 2j0v_A RAC-like GTP-binding pr 97.4 0.00015 5.1E-09 60.8 4.8 23 160-182 10-32 (212)
410 2j1l_A RHO-related GTP-binding 97.4 0.00021 7.2E-09 60.4 5.8 86 71-157 100-203 (214)
411 3pqc_A Probable GTP-binding pr 97.4 0.00059 2E-08 55.6 8.2 82 74-157 102-188 (195)
412 2ew1_A RAS-related protein RAB 97.4 0.00016 5.5E-09 60.9 4.7 89 68-157 90-183 (201)
413 2dyk_A GTP-binding protein; GT 97.4 0.00035 1.2E-08 55.2 6.5 80 72-157 75-156 (161)
414 3cbq_A GTP-binding protein REM 97.4 0.00045 1.6E-08 57.6 7.5 85 72-157 92-182 (195)
415 2iwr_A Centaurin gamma 1; ANK 97.3 0.00071 2.4E-08 54.6 8.4 81 73-157 69-163 (178)
416 2bme_A RAB4A, RAS-related prot 97.3 0.00018 6E-09 58.6 4.7 88 69-157 75-167 (186)
417 2qor_A Guanylate kinase; phosp 97.3 7.8E-05 2.7E-09 62.9 2.6 26 158-183 11-36 (204)
418 2atv_A RERG, RAS-like estrogen 97.3 0.00018 6.3E-09 59.5 4.8 88 69-157 91-185 (196)
419 1wms_A RAB-9, RAB9, RAS-relate 97.3 0.00044 1.5E-08 55.6 7.0 88 69-157 72-168 (177)
420 1wb1_A Translation elongation 97.3 0.00063 2.2E-08 65.5 9.1 82 73-156 93-182 (482)
421 3l0i_B RAS-related protein RAB 97.3 4.1E-05 1.4E-09 63.8 0.6 89 68-157 97-190 (199)
422 3c5c_A RAS-like protein 12; GD 97.3 0.00019 6.6E-09 59.2 4.7 85 72-157 87-180 (187)
423 1svi_A GTP-binding protein YSX 97.3 0.00075 2.6E-08 55.3 8.2 81 75-157 104-189 (195)
424 3cr8_A Sulfate adenylyltranfer 97.3 4E-05 1.4E-09 75.3 0.4 40 158-209 368-409 (552)
425 1z06_A RAS-related protein RAB 97.3 0.00035 1.2E-08 57.3 6.1 89 68-157 85-182 (189)
426 1fzq_A ADP-ribosylation factor 97.3 0.00049 1.7E-08 56.4 6.9 86 71-157 78-172 (181)
427 1kk1_A EIF2gamma; initiation o 97.3 0.0012 4.2E-08 61.8 10.5 84 73-157 103-194 (410)
428 1j8m_F SRP54, signal recogniti 97.3 6.5E-05 2.2E-09 68.1 1.6 41 157-209 96-136 (297)
429 3zvr_A Dynamin-1; hydrolase, D 97.3 0.0012 4.2E-08 67.1 11.1 24 160-183 52-75 (772)
430 2qu8_A Putative nucleolar GTP- 97.3 0.0016 5.4E-08 55.4 10.0 85 73-157 105-199 (228)
431 2px0_A Flagellar biosynthesis 97.3 0.0001 3.4E-09 66.7 2.5 39 158-208 104-143 (296)
432 3q3j_B RHO-related GTP-binding 97.3 0.00017 5.8E-09 61.1 3.8 26 158-183 26-51 (214)
433 3cb4_D GTP-binding protein LEP 97.2 0.00052 1.8E-08 68.0 7.7 107 72-183 90-217 (599)
434 1s0u_A EIF-2-gamma, translatio 97.2 0.00062 2.1E-08 63.9 7.9 84 73-157 101-192 (408)
435 3o47_A ADP-ribosylation factor 97.2 0.00053 1.8E-08 62.6 7.0 86 71-157 227-321 (329)
436 1vma_A Cell division protein F 97.2 0.0001 3.4E-09 67.2 1.9 40 158-209 103-142 (306)
437 1svm_A Large T antigen; AAA+ f 97.2 0.00016 5.4E-09 67.8 3.2 34 149-182 158-192 (377)
438 3th5_A RAS-related C3 botulinu 96.3 5.5E-05 1.9E-09 63.2 0.0 25 158-182 29-53 (204)
439 3ihw_A Centg3; RAS, centaurin, 97.2 0.00088 3E-08 55.2 7.4 84 73-157 82-174 (184)
440 3p32_A Probable GTPase RV1496/ 97.2 0.00016 5.3E-09 66.8 2.9 62 161-245 81-184 (355)
441 2qt1_A Nicotinamide riboside k 97.2 0.00018 6.3E-09 60.5 3.1 26 158-183 20-45 (207)
442 1kk1_A EIF2gamma; initiation o 97.2 0.00029 1E-08 66.1 4.7 24 160-183 11-34 (410)
443 1ixz_A ATP-dependent metallopr 97.1 8.1E-05 2.8E-09 64.7 0.7 46 148-209 39-85 (254)
444 3o47_A ADP-ribosylation factor 97.1 0.00041 1.4E-08 63.3 5.3 24 160-183 166-189 (329)
445 1cke_A CK, MSSA, protein (cyti 97.1 0.00019 6.5E-09 61.0 2.6 37 159-204 5-41 (227)
446 1ega_A Protein (GTP-binding pr 97.1 0.0035 1.2E-07 56.4 10.8 83 71-157 83-169 (301)
447 2wkq_A NPH1-1, RAS-related C3 97.1 0.0005 1.7E-08 61.3 5.2 89 68-157 218-324 (332)
448 3j2k_7 ERF3, eukaryotic polype 97.1 0.00048 1.6E-08 65.5 5.3 24 159-182 17-40 (439)
449 3tr5_A RF-3, peptide chain rel 97.1 0.00021 7.1E-09 69.8 2.7 61 161-247 15-96 (528)
450 1iy2_A ATP-dependent metallopr 97.0 0.00012 4E-09 64.9 0.7 46 148-209 63-109 (278)
451 3sjy_A Translation initiation 97.0 0.00033 1.1E-08 65.6 3.8 25 159-183 8-32 (403)
452 2j37_W Signal recognition part 97.0 0.00097 3.3E-08 64.7 6.8 22 159-180 101-122 (504)
453 1d7q_A Translation initiation 97.0 0.0013 4.6E-08 53.2 6.5 62 2-65 34-96 (143)
454 3izq_1 HBS1P, elongation facto 97.0 0.00033 1.1E-08 69.6 3.5 53 161-243 169-255 (611)
455 3izy_P Translation initiation 97.0 0.00018 6.1E-09 70.5 1.6 23 160-182 5-27 (537)
456 1jt8_A EIF-1A, probable transl 97.0 0.00049 1.7E-08 52.8 3.7 62 2-65 23-86 (102)
457 1wf3_A GTP-binding protein; GT 97.0 0.0017 5.7E-08 58.7 7.8 82 71-157 81-167 (301)
458 3llu_A RAS-related GTP-binding 97.0 0.0027 9.1E-08 52.5 8.5 85 71-156 90-190 (196)
459 2dgy_A MGC11102 protein; EIF-1 97.0 0.0018 6.2E-08 50.4 6.8 62 2-65 18-81 (111)
460 1s0u_A EIF-2-gamma, translatio 97.0 0.00051 1.7E-08 64.5 4.3 25 159-183 8-32 (408)
461 3k1j_A LON protease, ATP-depen 97.0 0.00043 1.5E-08 68.3 4.0 40 144-183 44-84 (604)
462 1jjv_A Dephospho-COA kinase; P 97.0 0.00037 1.3E-08 58.4 3.0 21 161-181 4-24 (206)
463 1m7b_A RND3/RHOE small GTP-bin 97.0 0.00074 2.5E-08 55.2 4.7 87 69-156 71-176 (184)
464 2pez_A Bifunctional 3'-phospho 96.9 0.00037 1.3E-08 57.2 2.8 25 158-182 4-28 (179)
465 3lvq_E ARF-GAP with SH3 domain 96.9 0.0022 7.5E-08 61.3 8.7 88 69-157 382-478 (497)
466 1zun_B Sulfate adenylate trans 96.9 0.0019 6.6E-08 61.0 8.1 78 73-152 124-213 (434)
467 3qq5_A Small GTP-binding prote 96.9 0.00034 1.2E-08 66.5 2.7 82 72-157 109-190 (423)
468 3lvq_E ARF-GAP with SH3 domain 96.9 0.00079 2.7E-08 64.4 5.3 24 160-183 323-346 (497)
469 2if2_A Dephospho-COA kinase; a 96.9 0.00036 1.2E-08 58.3 2.6 22 160-181 2-23 (204)
470 4dkx_A RAS-related protein RAB 96.9 0.0019 6.5E-08 55.4 7.2 92 65-157 74-170 (216)
471 1m7g_A Adenylylsulfate kinase; 96.9 0.00016 5.4E-09 61.3 0.3 39 158-208 24-64 (211)
472 2elf_A Protein translation elo 96.9 0.00062 2.1E-08 63.4 4.2 48 161-246 23-73 (370)
473 3p26_A Elongation factor 1 alp 96.9 0.00037 1.3E-08 67.0 2.6 25 158-182 32-56 (483)
474 3j2k_7 ERF3, eukaryotic polype 96.9 0.0031 1.1E-07 59.9 9.0 83 73-155 115-217 (439)
475 3p26_A Elongation factor 1 alp 96.9 0.0013 4.6E-08 63.1 6.4 81 72-152 130-227 (483)
476 2zej_A Dardarin, leucine-rich 96.9 0.001 3.5E-08 54.5 4.9 85 72-156 75-171 (184)
477 3kb2_A SPBC2 prophage-derived 96.8 0.00053 1.8E-08 55.2 3.0 23 160-182 2-24 (173)
478 4dkx_A RAS-related protein RAB 96.8 0.0012 3.9E-08 56.8 5.2 22 160-181 14-35 (216)
479 1ex7_A Guanylate kinase; subst 96.8 0.00047 1.6E-08 58.3 2.7 22 161-182 3-24 (186)
480 1np6_A Molybdopterin-guanine d 96.8 0.00043 1.5E-08 57.8 2.4 23 160-182 7-29 (174)
481 2wkq_A NPH1-1, RAS-related C3 96.8 0.00099 3.4E-08 59.4 4.9 25 158-182 154-178 (332)
482 2wji_A Ferrous iron transport 96.8 0.00077 2.6E-08 54.3 3.8 79 75-157 80-159 (165)
483 1qhx_A CPT, protein (chloramph 96.8 0.0006 2.1E-08 55.5 3.1 25 159-183 3-27 (178)
484 2g3y_A GTP-binding protein GEM 96.8 0.0024 8.2E-08 54.5 7.0 84 73-157 108-197 (211)
485 1kht_A Adenylate kinase; phosp 96.8 0.0006 2E-08 55.9 3.1 24 158-181 2-25 (192)
486 1lnz_A SPO0B-associated GTP-bi 96.8 0.0023 7.8E-08 59.0 7.3 83 74-157 234-324 (342)
487 1d2e_A Elongation factor TU (E 96.8 0.00064 2.2E-08 63.6 3.6 55 161-242 5-75 (397)
488 2h5e_A Peptide chain release f 96.8 0.00057 2E-08 66.7 3.3 64 161-247 15-96 (529)
489 3cm0_A Adenylate kinase; ATP-b 96.8 0.00051 1.7E-08 56.4 2.5 24 158-181 3-26 (186)
490 1gwn_A RHO-related GTP-binding 96.8 0.0011 3.9E-08 55.7 4.7 87 69-156 92-197 (205)
491 3m6a_A ATP-dependent protease 96.8 0.00037 1.3E-08 68.1 1.7 47 149-207 98-144 (543)
492 2c78_A Elongation factor TU-A; 96.7 0.0028 9.4E-08 59.3 7.4 76 72-149 94-180 (405)
493 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00071 2.4E-08 54.7 2.9 23 158-180 22-44 (149)
494 3lw7_A Adenylate kinase relate 96.7 0.00076 2.6E-08 53.9 3.1 20 160-179 2-21 (179)
495 3t61_A Gluconokinase; PSI-biol 96.7 0.00065 2.2E-08 56.9 2.7 24 159-182 18-41 (202)
496 2c78_A Elongation factor TU-A; 96.7 0.00054 1.9E-08 64.2 2.3 23 159-181 11-33 (405)
497 1odf_A YGR205W, hypothetical 3 96.7 0.00056 1.9E-08 61.6 2.3 26 158-183 30-55 (290)
498 1wb1_A Translation elongation 96.7 0.0008 2.7E-08 64.8 3.4 25 159-183 19-43 (482)
499 2xex_A Elongation factor G; GT 96.7 0.00075 2.6E-08 67.9 3.3 22 160-181 11-32 (693)
500 3iby_A Ferrous iron transport 96.7 0.0007 2.4E-08 59.6 2.6 80 75-158 82-162 (256)
No 1
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=100.00 E-value=3.8e-45 Score=336.78 Aligned_cols=236 Identities=33% Similarity=0.545 Sum_probs=189.5
Q ss_pred eEEEecCCCCc-eeccCCC--CcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeecccccccccchhccccE
Q 023887 3 VIVQQSEPSRT-SDCNDKT--GVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79 (276)
Q Consensus 3 ~~~~~~~~~~~-~~~~~~~--~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~~anvD~ 79 (276)
+.|.+. .|.| .|..+.+ |..+.|++||+|++++..|+|||||.++..+ ++.|+|++++||+|.+.|+++||+|+
T Consensus 13 g~vi~~-~~~~y~v~~~~~~~~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~~R~~~l~R~~~anvD~ 89 (307)
T 1t9h_A 13 GKIIKA-LSGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKERTNELIRPPICNVDQ 89 (307)
T ss_dssp EEEEEE-ETTEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEECCCSCEETTTTEECCCE
T ss_pred eEEEEE-ECCEEEEEEcCCCCCcEEEEEEcccccccCCCCCCCeEEEEEEcC--CCceEEEEEcchhhhhhHHHHHhCCE
Confidence 678888 6777 7766532 7789999999999888889999999998643 45799999999999999999999999
Q ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH----HHHHHHHhhhcCceeEEEecCCccchHHHHh
Q 023887 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV----LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155 (276)
Q Consensus 80 vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~ 155 (276)
+++|+|++.|.++..+++|||+.|+..+++++||+||+||.+++. .+.|...|+++||+++.+|+.++.+++.|..
T Consensus 90 v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 90 AVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence 999999999999999999999999999999999999999998754 5788888888999999999988888888877
Q ss_pred hccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCc
Q 023887 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (276)
Q Consensus 156 ~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~ 235 (276)
..+|++++|+|+||||||||||+|.|.. .|..|+|. ...+.|+|+|+...++... .+
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~------------~~~~G~I~----------~~~~~G~~tt~~~~~~~~~-~g 226 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPEL------------GLRTNEIS----------EHLGRGKHTTRHVELIHTS-GG 226 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-----------------------------------------CCCCCEEEET-TE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccc------------ccccccee----------eecCCCcccccHHHHhhcC-CE
Confidence 7899999999999999999999999976 55555544 3345667777766666654 67
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHh
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVC 264 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~ 264 (276)
+++||||+..+++...+.+++...|+++.
T Consensus 227 ~v~dtpg~~~~~l~~lt~e~l~~~f~~~~ 255 (307)
T 1t9h_A 227 LVADTPGFSSLEFTDIEEEELGYTFPDIR 255 (307)
T ss_dssp EEESSCSCSSCCCTTCCHHHHGGGSHHHH
T ss_pred EEecCCCccccccccCCHHHHHHHHHHHH
Confidence 99999999888876666677877788764
No 2
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=100.00 E-value=1.4e-41 Score=318.75 Aligned_cols=235 Identities=28% Similarity=0.427 Sum_probs=190.0
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCe------eEEeeecccccccccc-
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRR------GMIENVFQRSTEILDP- 72 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~------~~i~~i~~R~~~~~r~- 72 (276)
|.+.|.+. +|.| .|.++ +|..+.|.+||+++ .|+|||||.++..+ ++. |+|++++||+|.|.||
T Consensus 48 ~~g~Vi~~-~~~~~~v~~~-~g~~~~~~~r~~~~----~~~vGD~V~~~~~~--~~~~~~~~~~~I~~i~~R~~~l~R~~ 119 (358)
T 2rcn_A 48 AEGIVISR-FGMHADVESA-DGEVHRCNIRRTIR----SLVTGDRVVWRPGK--AAAEGVNVKGIVEAVHERTSVLTRPD 119 (358)
T ss_dssp EEEEEEEE-ETTEEEEEET-TSCEEEEEECTTCC----CCCBTCEEEEECBC---------CCEEEEEECCCSCEEEEC-
T ss_pred ceEEEEEE-ECCEEEEEeC-CCcEEEEEecCCCC----CCCCCcEEEEEeCC--CccccccccceEeEEeCCcCcccCcc
Confidence 46788888 7777 77655 57789999999886 39999999998643 223 8999999999999996
Q ss_pred -------hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH---HHHHHHHhhhcCceeEEE
Q 023887 73 -------PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 73 -------~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~ 142 (276)
++||+|++++|++. .|.++..+++|||+.|+..+++++||+||+||++++. .+.|...|+++||+++.+
T Consensus 120 ~~~~~~~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~ 198 (358)
T 2rcn_A 120 FYDGVKPIAANIDQIVIVSAI-LPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMV 198 (358)
T ss_dssp ----CEEEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEEC
T ss_pred hhhHHHHHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEE
Confidence 38999999988775 5999999999999999999999999999999998765 567888899999999999
Q ss_pred ecCCccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc-ccccceeeccccccccccccCCCCc
Q 023887 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE-PILGSKWFEDQRVGEVSTKSGRGKH 221 (276)
Q Consensus 143 s~~~~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~-p~~G~i~~~g~~~~~vs~~~g~gk~ 221 (276)
|+.++.++++|++.++|++++|+|+||||||||||+|+|.. . |..|+|.++ .|+++|
T Consensus 199 Sa~~~~gl~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~------------~~~~~G~I~~~----------~G~g~~ 256 (358)
T 2rcn_A 199 SSHTQDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQ------------NEILTNDVSNV----------SGLGQH 256 (358)
T ss_dssp BTTTTBTHHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCS------------SCCCCC---------------------
T ss_pred ecCCCcCHHHHHHhcCCCEEEEECCCCccHHHHHHHHhccc------------cccccCCcccc----------CCCCcc
Confidence 99999999999999999999999999999999999999966 6 777777654 234455
Q ss_pred eeeeEEEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc
Q 023887 222 TTRHVSLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV 266 (276)
Q Consensus 222 tt~~~~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~ 266 (276)
+|+...+..+..+..++||||++++++.....+++.+.|+++.+.
T Consensus 257 tt~~~~i~~v~q~~~l~dtpgv~e~~l~~l~~~e~~~~~~e~l~~ 301 (358)
T 2rcn_A 257 TTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQITQGFVEFHDY 301 (358)
T ss_dssp --CCCEEEECTTSCEEEECHHHHTCCCCCCCHHHHHHTSGGGGGG
T ss_pred ceEEEEEEEECCCCEecCcccHHHhhhcCCCHHHHHHHHHHHHHH
Confidence 666555555555778999999998888777777888888888764
No 3
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=1e-39 Score=299.45 Aligned_cols=235 Identities=30% Similarity=0.458 Sum_probs=190.9
Q ss_pred CeeEEEecCCCCc--eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeecccccccccchhcccc
Q 023887 1 MRVIVQQSEPSRT--SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVD 78 (276)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~~anvD 78 (276)
|.+.|.+..-|.| .|. .+|..+.|++||++++.+. |+|||||.++..+ ++.|+|+++.+|.+.+.|+.++|+|
T Consensus 7 ~~g~v~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~~--~~~g~I~~i~er~~~l~r~~~~naD 81 (302)
T 2yv5_A 7 KRGLVVDREAQMIGVYLF--EDGKTYRGIPRGKVLKKTK-IYAGDYVWGEVVD--PNTFAIEEVEERKNLLIRPKVANVD 81 (302)
T ss_dssp EEEEEEEEETTEEEEEET--TTCCEEEEEECSSSTTSSC-CCBTCEEEEEEEE--TTEEEEEEECCCSCEEETTEEESCC
T ss_pred eeEEEEEeeCCeEEEEEe--cCCEEEEEEEcCCcccCCC-CcCceEEEEEEcc--CCeEEEEeeCChHHHHhHHHHHhcC
Confidence 3577888845555 444 4577899999999987656 9999999998653 4679999999999999999999999
Q ss_pred EEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH---HHHHHHHhhhcCceeEEEecCCccchHHHHh
Q 023887 79 HLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQ 155 (276)
Q Consensus 79 ~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~ 155 (276)
++++|+|+..|.++...++++|..++..++|+++|+||+||.++.. .+.+...+++++++++.+|+.++.+++.|..
T Consensus 82 ~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 82 RVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp EEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHh
Confidence 9999999998988988999999999989999999999999988752 5567777788899999999999999999999
Q ss_pred hccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCc
Q 023887 156 RLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (276)
Q Consensus 156 ~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~ 235 (276)
.++|++++|+|+||||||||+|+|. .. .|.+|+|.+ ..+.|+|+|+....+.....+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~------------~~~~G~i~~----------~~~~G~~~t~~~~~~~~~~~g 218 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GE------------ELRTQEVSE----------KTERGRHTTTGVRLIPFGKGS 218 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SC------------CCCCSCC-------------------CCCCEEEEEETTTE
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hh------------hCccccccc----------ccCCCCCceeeEEEEEcCCCc
Confidence 9999999999999999999999999 76 677777664 335667787776666665678
Q ss_pred EEEecCCCCCCCC-ChhhHHHHHHHHHHH
Q 023887 236 YLADTPGFNQPSL-LKVTKQSLAQTFPEV 263 (276)
Q Consensus 236 ~iiDtPg~~~~~l-~~~~~~~l~~~f~ei 263 (276)
+++||||+..+++ +..+.+++...|+++
T Consensus 219 ~v~d~pg~~~~~l~~~lt~e~l~~~f~~~ 247 (302)
T 2yv5_A 219 FVGDTPGFSKVEATMFVKPREVRNYFREF 247 (302)
T ss_dssp EEESSCCCSSCCGGGTSCGGGGGGGCGGG
T ss_pred EEEECcCcCcCcccccCCHHHHHHHHHHH
Confidence 9999999987776 555456665566643
No 4
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.98 E-value=1.9e-31 Score=244.09 Aligned_cols=236 Identities=29% Similarity=0.472 Sum_probs=185.3
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeecccccccccchhccccE
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRSTEILDPPVANVDH 79 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~~~~r~~~anvD~ 79 (276)
|.+.|.+. .|.| .|....++..+.|.++|.|.+....|.|||+|.+.... ++...|.++.+|.+.+.++.++|+|.
T Consensus 11 ~~g~v~~~-~~~~~~v~~~~~~sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~--~~~~~iwD~qer~~~l~~~~~~~ad~ 87 (301)
T 1u0l_A 11 RRGIVVSF-HSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLHRKNLLTKPHVANVDQ 87 (301)
T ss_dssp EEEEEEEE-ETTEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEECCC--SSSEEEEEECCCSCEETTTTEESCCE
T ss_pred eeEEEEEe-eCCEEEEEEcCCCcEEEEEEcccccccCCCCCCccEEEEEEcC--CCeEEEEEEccccceeeccccccCCE
Confidence 36888888 5555 77644336789999999997556779999999876432 34678888899999999999999999
Q ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHH---HHHHHHHhhhcCceeEEEecCCccchHHHHhh
Q 023887 80 LLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEV---LNTWKSRLHTWGYEPLFCSVESKLGLDSLLQR 156 (276)
Q Consensus 80 vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~l~~l~~~ 156 (276)
+++|+|+..|.++...+++++..++..++|+++|+||+||.++.. .++|...+... ++++.+|+.++.+++++...
T Consensus 88 vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~gv~~lf~~ 166 (301)
T 1u0l_A 88 VILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGMGIEELKEY 166 (301)
T ss_dssp EEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHH
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCcCHHHHHHH
Confidence 999999998887778899999888888999999999999987654 34454444444 78999999999999999988
Q ss_pred ccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceee---ccccccccccccCCCCceeeeEEEEecCC
Q 023887 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF---EDQRVGEVSTKSGRGKHTTRHVSLLPLSG 233 (276)
Q Consensus 157 l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~---~g~~~~~vs~~~g~gk~tt~~~~~~~~~~ 233 (276)
+.|++++++|+||||||||||+|.|.. .|++|+|.+ +|+. +|+....+....
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~------------~~~~G~i~~~~~~g~~-------------~t~~~~~~~~~~ 221 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGL------------KLRVSEVSEKLQRGRH-------------TTTTAQLLKFDF 221 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTC------------CCC--------------------------CCCSCCEEECTT
T ss_pred hcCCeEEEECCCCCcHHHHHHHhcccc------------cccccceecccCCCCC-------------ceeeeEEEEcCC
Confidence 899999999999999999999999976 788888876 4443 443333444445
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhh
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA 265 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~ 265 (276)
.++++|+||++.+++...+.+++..+|+++..
T Consensus 222 ~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~ 253 (301)
T 1u0l_A 222 GGYVVDTPGFANLEINDIEPEELKHYFKEFGD 253 (301)
T ss_dssp SCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS
T ss_pred CCEEEECcCCCccCCCcCCHHHHHHHHHhccc
Confidence 67999999999988887788888888888754
No 5
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.84 E-value=1.1e-20 Score=171.44 Aligned_cols=144 Identities=24% Similarity=0.355 Sum_probs=108.9
Q ss_pred chhccccEEEEEEEcCCCCCCH-HHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccch
Q 023887 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGL 150 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~-~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 150 (276)
..++++|.++.|+|++.|..+. ..+++++ .++|.++|+||+||.+.+..+.|...+++.+++++.+|+.++.++
T Consensus 19 ~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi 93 (282)
T 1puj_A 19 EKLKLIDIVYELVDARIPMSSRNPMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGL 93 (282)
T ss_dssp HHGGGCSEEEEEEETTSTTTTSCHHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTG
T ss_pred HHHhhCCEEEEEEeCCCCCccCCHHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccH
Confidence 4689999999999999986553 4788876 589999999999999988888898888778899999999888877
Q ss_pred HHHHhhc------------------cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 151 DSLLQRL------------------RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 151 ~~l~~~l------------------~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.|...+ .+.+++++|.||||||||+|.|.|.. ...+
T Consensus 94 ~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~-------------------------~~~~ 148 (282)
T 1puj_A 94 NQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKN-------------------------IAKT 148 (282)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSC-------------------------CC--
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCc-------------------------eeec
Confidence 6655432 12379999999999999999999854 1223
Q ss_pred ccccCCCCceeeeEEEEecCCCcEEEecCCCCCCCCC
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGGYLADTPGFNQPSLL 249 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~l~ 249 (276)
+..+| +|+..+.+....+..++||||+..+...
T Consensus 149 ~~~~g----~T~~~~~~~~~~~~~l~DtpG~~~~~~~ 181 (282)
T 1puj_A 149 GDRPG----ITTSQQWVKVGKELELLDTPGILWPKFE 181 (282)
T ss_dssp --------------CCEEETTTEEEEECCCCCCSCCC
T ss_pred CCCCC----eeeeeEEEEeCCCEEEEECcCcCCCCCC
Confidence 33344 7777777777778899999999877654
No 6
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.84 E-value=2.8e-21 Score=173.76 Aligned_cols=142 Identities=22% Similarity=0.321 Sum_probs=112.4
Q ss_pred ccchhccccEEEEEEEcCCCCCCHH-HHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCcc
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPF-ALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKL 148 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~-~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 148 (276)
.+..++++|++++|+|++.|..+.. .++ ++ ++|+++|+||+||.+++..+.|...+++.|+++ .+|+.++.
T Consensus 15 ~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll------~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~ 86 (262)
T 3cnl_A 15 IKDLLRLVNTVVEVRDARAPFATSAYGVD-FS------RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEP 86 (262)
T ss_dssp HHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT------TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSC
T ss_pred HHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc------CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCc
Confidence 3457899999999999998865432 445 33 899999999999999888888988888888888 99999999
Q ss_pred chHHHHhhccCC--EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 149 GLDSLLQRLRDQ--TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 149 ~l~~l~~~l~g~--~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
+++.|...+... +++++|.||||||||+|.|.|... ..+ +..+| +|+..
T Consensus 87 gi~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~----------------------~~~---~~~~g----~T~~~ 137 (262)
T 3cnl_A 87 RKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRA----------------------SSV---GAQPG----ITKGI 137 (262)
T ss_dssp HHHHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC---------------------------------------CCS
T ss_pred CHHHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcccc----------------------ccc---CCCCC----Cccce
Confidence 999999988774 999999999999999999998541 111 22223 66666
Q ss_pred EEEecCCCcEEEecCCCCCCCC
Q 023887 227 SLLPLSGGGYLADTPGFNQPSL 248 (276)
Q Consensus 227 ~~~~~~~~~~iiDtPg~~~~~l 248 (276)
..+....+..++||||+..+.+
T Consensus 138 ~~~~~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 138 QWFSLENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEECTTSCEEESSCEECCCCC
T ss_pred EEEEeCCCEEEEECCCcccCcC
Confidence 6777777889999999988876
No 7
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.73 E-value=2.2e-18 Score=151.28 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=96.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|.++|.++...+..
T Consensus 7 ~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 7 AENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD------------APTEGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS------------CCSEEEEEETTEECCSSCHH
T ss_pred EEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCCCCHH
Confidence 456778887777889999888 89999999999999999999999965 89999999999876543211
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
.- .+...+.+++++|....
T Consensus 75 ~~-~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 75 EL-SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HH-HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred HH-HHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 00 00001346666654311
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||.. ++|....+.+.+.+.++.+.| +|++|||+
T Consensus 154 al~~~p~lllLDEPt~---~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 200 (224)
T 2pcj_A 154 ALANEPILLFADEPTG---NLDSANTKRVMDIFLKINEGGTSIVMVTHER 200 (224)
T ss_dssp HTTTCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHcCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 79999999 999999999999999998666 99999985
No 8
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.73 E-value=3.8e-18 Score=160.23 Aligned_cols=160 Identities=23% Similarity=0.272 Sum_probs=114.1
Q ss_pred chhccccEEEEEEEcCCCCCCH-HHHHHHHHHHHhcCCCEEEEEeCCCCCCH----HHHHHHHH-HhhhcCc---eeEEE
Q 023887 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDE----EVLNTWKS-RLHTWGY---EPLFC 142 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~-~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~----~~~~~~~~-~~~~~~~---~~~~~ 142 (276)
......|.++.|+|+.+|..+. ..+.+++ .++|+++|+||+||.++ +...+|.. .+++.|+ +++.+
T Consensus 67 ~~~~~~~lil~VvD~~d~~~s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~i 141 (369)
T 3ec1_A 67 RIGESKALVVNIVDIFDFNGSFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLV 141 (369)
T ss_dssp HHHHHCCEEEEEEETTCSGGGCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEEC
T ss_pred HhhccCcEEEEEEECCCCCCchhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEE
Confidence 3456789999999998764321 2455554 38899999999999875 33455544 3566777 68899
Q ss_pred ecCCccchHHHHhhc----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCC
Q 023887 143 SVESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR 218 (276)
Q Consensus 143 s~~~~~~l~~l~~~l----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~ 218 (276)
|+.++.+++.|...+ ++..++++|.+|+|||||+|+|.+... . .......+..+|
T Consensus 142 SA~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKStliN~L~~~~~------------~--------~~~~~~~~~~~g- 200 (369)
T 3ec1_A 142 SAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEAT------------G--------KGNVITTSYFPG- 200 (369)
T ss_dssp BTTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHHHHHHHHHHHH------------H--------TTCCCEEEECTT-
T ss_pred ECCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHHHHHHHHhhcc------------C--------CccceeecCCCC-
Confidence 999999998888776 688999999999999999999998420 0 001122333334
Q ss_pred CCceeeeEEEEecCCCcEEEecCCCCCCC--CChhhHHHHHHHH
Q 023887 219 GKHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTF 260 (276)
Q Consensus 219 gk~tt~~~~~~~~~~~~~iiDtPg~~~~~--l~~~~~~~l~~~f 260 (276)
||+....+....+..++||||+..+. ......+++...+
T Consensus 201 ---tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 241 (369)
T 3ec1_A 201 ---TTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIIT 241 (369)
T ss_dssp ---SSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred ---eEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence 88888888888889999999997665 2223344444443
No 9
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.73 E-value=2.4e-18 Score=155.71 Aligned_cols=123 Identities=19% Similarity=0.278 Sum_probs=97.2
Q ss_pred CceeEEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 136 GYEPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 136 ~~~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
.++.+.++|... ..++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|.++|+++....
T Consensus 9 ~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~------------~p~~G~I~~~G~~i~~~~ 76 (275)
T 3gfo_A 9 KVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL------------KPSSGRILFDNKPIDYSR 76 (275)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECCCSH
T ss_pred EEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC------------CCCCeEEEECCEECCccc
Confidence 346778888654 4889999888 89999999999999999999999965 899999999999873100
Q ss_pred cccCCCCceeeeEEEEecCCC--c--------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGG--G-------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~--~-------------------------------------------------------- 235 (276)
.. .+...+.+++++|.+. .
T Consensus 77 -~~--~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 77 -KG--IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp -HH--HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred -cc--HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHH
Confidence 00 0012356777776431 0
Q ss_pred -----------EEEecCCCCCCCCChhhHHHHHHHHHHHh-hcc--eEEEeeeCC
Q 023887 236 -----------YLADTPGFNQPSLLKVTKQSLAQTFPEVC-AVG--LLYMIHMLH 276 (276)
Q Consensus 236 -----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~-~~~--ii~~~H~~~ 276 (276)
+|+|||+. ++|......+.+.+.++. +.| +|++|||++
T Consensus 154 iAraL~~~P~lLlLDEPts---~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTA---GLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp HHHHHTTCCSEEEEECTTT---TCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred HHHHHHcCCCEEEEECccc---cCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 79999999 999999999999999997 556 999999974
No 10
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.72 E-value=3.4e-18 Score=160.60 Aligned_cols=162 Identities=22% Similarity=0.233 Sum_probs=111.3
Q ss_pred cchhccccEEEEEEEcCCCCCCH-HHHHHHHHHHHhcCCCEEEEEeCCCCCCHH----HHHHHHH-HhhhcCc---eeEE
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEE----VLNTWKS-RLHTWGY---EPLF 141 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~-~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~----~~~~~~~-~~~~~~~---~~~~ 141 (276)
+....+.|.+++|+|+.+|..+. ..+.+++ .++|+++|+||+||.+++ ..++|.. .+++.|+ +++.
T Consensus 64 ~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~ 138 (368)
T 3h2y_A 64 NGIGKSDALVVKIVDIFDFNGSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFL 138 (368)
T ss_dssp HHHHHSCCEEEEEEETTSHHHHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred HHHhccCcEEEEEEECCCCcccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEE
Confidence 34556788999999997653111 1344443 489999999999998653 3455543 3566777 7889
Q ss_pred EecCCccchHHHHhhc----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 142 CSVESKLGLDSLLQRL----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
+|+.++.+++.|...+ ++..++++|.+|+|||||+|+|.+... |.+ ......+.
T Consensus 139 iSA~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKStliN~L~~~~~---------------~~~----~~~~~~~~--- 196 (368)
T 3h2y_A 139 ISAAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFS---------------DET----ENVITTSH--- 196 (368)
T ss_dssp CCTTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHHHHHHHHHHHT---------------TSC----SSCCEEEC---
T ss_pred EeCCCCcCHHHHHhhhhhhcccceEEEecCCCCChhHHHHHHHhhhc---------------ccc----ccceecCC---
Confidence 9999999999888776 688999999999999999999998421 000 01122333
Q ss_pred CCCceeeeEEEEecCCCcEEEecCCCCCCC--CChhhHHHHHHHH
Q 023887 218 RGKHTTRHVSLLPLSGGGYLADTPGFNQPS--LLKVTKQSLAQTF 260 (276)
Q Consensus 218 ~gk~tt~~~~~~~~~~~~~iiDtPg~~~~~--l~~~~~~~l~~~f 260 (276)
.++||+....+.+..+..++||||+..+. .+....+++...+
T Consensus 197 -~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 240 (368)
T 3h2y_A 197 -FPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLIT 240 (368)
T ss_dssp -CC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHS
T ss_pred -CCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhc
Confidence 34488888888888789999999997665 2234455555544
No 11
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.72 E-value=4.9e-18 Score=152.17 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=96.8
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+.++.+.++|++...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|+++....
T Consensus 16 l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI------------KPSSGIVTVFGKNVVEEP 83 (256)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEETTTCH
T ss_pred EEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEECCEECCccH
Confidence 34567888887777899999888 89999999999999999999999965 899999999998764311
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
. ...+.+++++|....
T Consensus 84 ~------~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~l 157 (256)
T 1vpl_A 84 H------EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLI 157 (256)
T ss_dssp H------HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHH
T ss_pred H------HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHH
Confidence 0 122345555554211
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+|+|||.. ++|......+.+.+.++.+.| +|++||++
T Consensus 158 AraL~~~p~lllLDEPts---~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 158 ARALMVNPRLAILDEPTS---GLDVLNAREVRKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp HHHHTTCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred HHHHHcCCCEEEEeCCcc---ccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 79999999 999999999999999998666 99999986
No 12
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.72 E-value=5.5e-18 Score=159.84 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=102.0
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|+....++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|+++|+++...+.
T Consensus 5 ~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~p~~G~I~i~G~~~~~~~~ 72 (381)
T 3rlf_A 5 QLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE------------TITSGDLFIGEKRMNDTPP 72 (381)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTCCG
T ss_pred EEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC------------CCCCeEEEECCEECCCCCH
Confidence 3567888898888899999988 89999999999999999999999965 9999999999998876543
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
. .+.+++++|+...
T Consensus 73 ~-------~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiA 145 (381)
T 3rlf_A 73 A-------ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIG 145 (381)
T ss_dssp G-------GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred H-------HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHH
Confidence 2 2568898887533
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||.....++.+.+.++.++ | +|++|||+
T Consensus 146 rAL~~~P~lLLLDEPts---~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~ 194 (381)
T 3rlf_A 146 RTLVAEPSVFLLDEPLS---NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ 194 (381)
T ss_dssp HHHHHCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred HHHHcCCCEEEEECCCc---CCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 79999999 99999999999999999764 6 99999986
No 13
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.72 E-value=3.4e-18 Score=151.14 Aligned_cols=123 Identities=18% Similarity=0.301 Sum_probs=93.7
Q ss_pred ceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
++.+.++|+. ...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|+++|.++..
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~~~~ 71 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD------------KPTEGEVYIDNIKTND 71 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTT
T ss_pred EEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCceEEEECCEEccc
Confidence 3556777753 24688898888 89999999999999999999999965 9999999999987654
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+... ..+...+.+++++|.+..
T Consensus 72 ~~~~~-~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 72 LDDDE-LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp CCHHH-HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHH
T ss_pred CCHHH-HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHH
Confidence 43211 000011235555543211
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||+. ++|......+.+.+.++.+. | +|++|||+
T Consensus 151 ~QRv~iAral~~~p~llllDEPts---~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~ 206 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTW---ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 79999999 99999999999999999764 5 99999986
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.71 E-value=4.9e-18 Score=150.48 Aligned_cols=120 Identities=15% Similarity=0.267 Sum_probs=92.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+..
T Consensus 9 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~~ 76 (240)
T 1ji0_A 9 VQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV------------RAQKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTTCCHH
T ss_pred EEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCceEEECCEECCCCCHH
Confidence 456778887777889999888 89999999999999999999999965 89999999999776432110
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
. ...+.+++++|...
T Consensus 77 ~----~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAr 152 (240)
T 1ji0_A 77 V----INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp H----HHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHH
T ss_pred H----HHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHH
Confidence 0 00111333332210
Q ss_pred -------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 -------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 -------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+|+|||+. ++|....+.+.+.+.++.+.| +|++||++
T Consensus 153 aL~~~p~lllLDEPts---~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~ 199 (240)
T 1ji0_A 153 ALMSRPKLLMMDEPSL---GLAPILVSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp HHTTCCSEEEEECTTT---TCCHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred HHHcCCCEEEEcCCcc---cCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 079999999 999999999999999998665 99999986
No 15
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.71 E-value=6.2e-18 Score=152.23 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=94.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
.+.+.++|++...++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|.++|+++...+..
T Consensus 14 ~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 14 ASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL------------SPSHGECHLLGQNLNSWQPK 81 (266)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS------------CCSSCEEEETTEETTTSCHH
T ss_pred EEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECCEECCcCCHH
Confidence 456778888888899999988 89999999999999999999999965 89999999999877543221
Q ss_pred cCCCCceeeeEEEEecC---------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLS--------------------------------------------------------------- 232 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~--------------------------------------------------------------- 232 (276)
. ..+.+++++|.
T Consensus 82 ~-----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 82 A-----LARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp H-----HHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred H-----HhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 1 11223333332
Q ss_pred ---------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 233 ---------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 233 ---------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+..+|+|||+. +||......+.+.+.++.+. + +|++|||+
T Consensus 157 ~~~~~~~~~p~lLllDEPts---~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl 208 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTS---ALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL 208 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCS---SCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH
T ss_pred hcccccCCCCCEEEEeCccc---cCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH
Confidence 22259999999 99999999999999999765 4 89999986
No 16
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.71 E-value=6.9e-18 Score=151.79 Aligned_cols=123 Identities=17% Similarity=0.184 Sum_probs=96.3
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+.++.+.++|++...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|+++|+++. .+
T Consensus 25 l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~i~-~~ 91 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE------------DFDEGEIIIDGINLK-AK 91 (263)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEESS-ST
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC------------CCCCcEEEECCEECC-Cc
Confidence 34567888887777899999888 89999999999999999999999965 899999999998763 11
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
... .+...+.+++++|....
T Consensus 92 ~~~--~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 92 DTN--LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp TCC--HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred ccc--HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH
Confidence 000 00012345555543211
Q ss_pred -----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 -----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 -----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+|+|||+. ++|....+.+.+.+.++.+.| +|++|||+
T Consensus 170 lAraL~~~p~lllLDEPts---~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 219 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTS---ALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219 (263)
T ss_dssp HHHHHTTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHCCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 79999999 999999999999999997766 99999986
No 17
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.70 E-value=5.4e-18 Score=155.69 Aligned_cols=121 Identities=23% Similarity=0.375 Sum_probs=99.7
Q ss_pred cCceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|. ....++++++.+ +|++++|+|+||||||||+++|+| +|+|++|+|.++|.++...
T Consensus 54 i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g------------l~~p~~G~I~i~G~~i~~~ 121 (306)
T 3nh6_A 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFR------------FYDISSGCIRIDGQDISQV 121 (306)
T ss_dssp EEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTT------------SSCCSEEEEEETTEETTSB
T ss_pred EEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHc------------CCCCCCcEEEECCEEcccC
Confidence 44677888885 456789999888 899999999999999999999999 4599999999999988765
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.+++++|.+..
T Consensus 122 ~~~~-----~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqr 196 (306)
T 3nh6_A 122 TQAS-----LRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196 (306)
T ss_dssp CHHH-----HHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHH
T ss_pred CHHH-----HhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHH
Confidence 4322 34567777765422
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+|+|||+. ++|..+...+.+.+.++.+.. +|++||++
T Consensus 197 QRvaiARAL~~~p~iLlLDEPts---~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l 249 (306)
T 3nh6_A 197 QRVAIARTILKAPGIILLDEATS---ALDTSNERAIQASLAKVCANRTTIVVAHRL 249 (306)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSS---CCCHHHHHHHHHHHHHHHTTSEEEEECCSH
T ss_pred HHHHHHHHHHhCCCEEEEECCcc---cCCHHHHHHHHHHHHHHcCCCEEEEEEcCh
Confidence 79999999 999999999999999987644 99999986
No 18
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.70 E-value=8.7e-18 Score=157.70 Aligned_cols=124 Identities=19% Similarity=0.262 Sum_probs=101.2
Q ss_pred CceeEEEecCC----ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 136 GYEPLFCSVES----KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 136 ~~~~~~~s~~~----~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
.++.+.++|.. ...++++++.+ +|++++|+|+||||||||+++|.|.. +|++|+|.++|+++.
T Consensus 26 ~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~------------~p~~G~I~i~G~~i~ 93 (366)
T 3tui_C 26 KLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE------------RPTEGSVLVDGQELT 93 (366)
T ss_dssp EEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECS
T ss_pred EEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC------------CCCceEEEECCEECC
Confidence 35667788854 24688999888 89999999999999999999999965 999999999999887
Q ss_pred ccccccCCCCceeeeEEEEecCCCc-------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------- 235 (276)
..+...- +..++.+++++|.+..
T Consensus 94 ~~~~~~~--~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 94 TLSESEL--TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp SCCHHHH--HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHH
T ss_pred cCCHHHH--HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHH
Confidence 6543210 0123568888887533
Q ss_pred -------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeCC
Q 023887 236 -------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHMLH 276 (276)
Q Consensus 236 -------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~~ 276 (276)
+|+|||+. +||......+.+++.++.+. | ++++|||++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs---~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATS---ALDPATTRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred HHHHHHHhcCCCEEEEECCCc---cCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 79999999 99999999999999999764 6 999999973
No 19
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.69 E-value=2.1e-17 Score=147.09 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=91.8
Q ss_pred CceeEEEec--CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 136 GYEPLFCSV--ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 136 ~~~~~~~s~--~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
.++.+.++| .....++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|.++...
T Consensus 9 ~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~i~g~~~~~~ 76 (247)
T 2ff7_A 9 TFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY------------IPENGQVLIDGHDLALA 76 (247)
T ss_dssp EEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEETTTS
T ss_pred eEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEhhhC
Confidence 356778888 3456789999888 89999999999999999999999955 89999999999776432
Q ss_pred ccccCCCCceeeeEEEEecCC-----------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSG----------------------------------------------------------- 233 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~----------------------------------------------------------- 233 (276)
+... ..+.+++++|.+
T Consensus 77 ~~~~-----~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 151 (247)
T 2ff7_A 77 DPNW-----LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR 151 (247)
T ss_dssp CHHH-----HHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHH
T ss_pred CHHH-----HHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHH
Confidence 1100 111222222211
Q ss_pred -------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 -------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 -------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+|+|||.. ++|......+.+.+.++.+ + +|++||+++
T Consensus 152 qRv~iAraL~~~p~lllLDEPts---~LD~~~~~~i~~~l~~~~~-g~tviivtH~~~ 205 (247)
T 2ff7_A 152 QRIAIARALVNNPKILIFDEATS---ALDYESEHVIMRNMHKICK-GRTVIIIAHRLS 205 (247)
T ss_dssp HHHHHHHHHTTCCSEEEECCCCS---CCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHcC-CCEEEEEeCCHH
Confidence 1279999999 9999999999999999954 5 999999863
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.69 E-value=2.1e-17 Score=154.83 Aligned_cols=117 Identities=20% Similarity=0.247 Sum_probs=98.2
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|+++...+.
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~~- 72 (359)
T 2yyz_A 6 VVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY------------KPTSGEIYFDDVLVNDIPP- 72 (359)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCG-
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC------------CCCccEEEECCEECCCCCh-
Confidence 456778887777889999888 89999999999999999999999965 8999999999998765432
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+.+++++|....
T Consensus 73 ------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 73 ------KYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp ------GGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred ------hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 12467777775322
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||....+++.+.+.++.+. | +|++|||+
T Consensus 147 AL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 194 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLS---NLDANLRMIMRAEIKHLQQELGITSVYVTHDQ 194 (359)
T ss_dssp HHTTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred HHHcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 79999999 99999999999999999764 5 99999985
No 21
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.69 E-value=2e-17 Score=154.91 Aligned_cols=122 Identities=20% Similarity=0.212 Sum_probs=98.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++|+||||||||||+|+|+|.. +|++|+|.++|+++.....
T Consensus 6 ~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~p~~G~I~i~G~~i~~~~~ 73 (359)
T 3fvq_A 6 HIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE------------QPDSGEISLSGKTIFSKNT 73 (359)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS------------CCSEEEEEETTEEEESSSC
T ss_pred EEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC------------CCCCcEEEECCEECccccc
Confidence 3567888898888899999988 89999999999999999999999966 9999999999998743211
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
. -+...+.+++++|+...
T Consensus 74 ~---~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 74 N---LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALA 150 (359)
T ss_dssp B---CCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred c---cchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 1 01133568888886432
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
+|+|||.. +||.....++.+.+.++.+ .| +|++|||+
T Consensus 151 rAL~~~P~lLLLDEPts---~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~ 199 (359)
T 3fvq_A 151 RALAPDPELILLDEPFS---ALDEQLRRQIREDMIAALRANGKSAVFVSHDR 199 (359)
T ss_dssp HHHTTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 79999999 9999999999887777654 46 99999986
No 22
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.68 E-value=2.2e-17 Score=154.48 Aligned_cols=117 Identities=18% Similarity=0.296 Sum_probs=97.5
Q ss_pred ceeEEEec-CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++| ++...++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|.++|+++...+.
T Consensus 17 ~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 17 FVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE------------RPTKGDVWIGGKRVTDLPP 84 (355)
T ss_dssp EEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTCCG
T ss_pred EEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCccEEEECCEECCcCCh
Confidence 45677888 6666788888888 89999999999999999999999965 8999999999988765332
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|+...
T Consensus 85 -------~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 85 -------QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp -------GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred -------hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 23567777775322
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||....+++.+.+.++.+. | +|++|||+
T Consensus 158 rAL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 206 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFA---AIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ 206 (355)
T ss_dssp HHHTTCCSEEEEESTTC---CSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred HHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 79999999 99999999999999999764 5 99999986
No 23
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.68 E-value=3e-17 Score=154.53 Aligned_cols=123 Identities=16% Similarity=0.246 Sum_probs=98.7
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|+++|+++......
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 6 LVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE------------EPSRGQIYIGDKLVADPEKG 73 (372)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETTEEEEEGGGT
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC------------CCCccEEEECCEECcccccc
Confidence 456778887777888999888 89999999999999999999999965 89999999999987651100
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..... ..+.+++++|....
T Consensus 74 ~~~~~-~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 152 (372)
T 1g29_1 74 IFVPP-KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152 (372)
T ss_dssp EECCG-GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred ccCCH-hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHH
Confidence 00001 23568888876422
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||....+++.+.+.++.+. | +|++|||+
T Consensus 153 AL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 200 (372)
T 1g29_1 153 AIVRKPQVFLMDEPLS---NLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ 200 (372)
T ss_dssp HHHTCCSEEEEECTTT---TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred HHhcCCCEEEECCCCc---cCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 79999999 99999999999999999764 5 99999986
No 24
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.68 E-value=2.8e-17 Score=154.65 Aligned_cols=118 Identities=21% Similarity=0.288 Sum_probs=96.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|+++...+.
T Consensus 13 ~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~~ 80 (372)
T 1v43_A 13 KLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE------------EPTEGRIYFGDRDVTYLPP 80 (372)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCG
T ss_pred EEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC------------CCCceEEEECCEECCCCCh
Confidence 3456788887777889999888 89999999999999999999999965 8999999999988765432
Q ss_pred ccCCCCceeeeEEEEecCCCc-----------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLSGGG----------------------------------------------------------- 235 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~~~~----------------------------------------------------------- 235 (276)
..+.+++++|....
T Consensus 81 -------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA 153 (372)
T 1v43_A 81 -------KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVA 153 (372)
T ss_dssp -------GGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHH
T ss_pred -------hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 12456777665321
Q ss_pred ---------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ---------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ---------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||....+++.+.+.++.+. | +|++|||+
T Consensus 154 rAL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 154 RAIVVEPDVLLMDEPLS---NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp HHHTTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred HHHhcCCCEEEEcCCCc---cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 79999999 99999999999999999764 5 99999986
No 25
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.68 E-value=2.3e-17 Score=154.74 Aligned_cols=117 Identities=21% Similarity=0.342 Sum_probs=98.5
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|+++...+.
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~~- 72 (362)
T 2it1_A 6 LENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY------------KPTSGKIYFDEKDVTELPP- 72 (362)
T ss_dssp EEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCG-
T ss_pred EEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC------------CCCceEEEECCEECCcCCH-
Confidence 456788887777889999888 89999999999999999999999965 8999999999998765432
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+.+++++|+...
T Consensus 73 ------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 73 ------KDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp ------GGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred ------hHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHH
Confidence 12467788775422
Q ss_pred --------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 --------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 --------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||.....++.+.+.++.+. | +|++|||+
T Consensus 147 AL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 194 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLS---NLDALLRLEVRAELKRLQKELGITTVYVTHDQ 194 (362)
T ss_dssp HHTTCCSEEEEESGGG---GSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred HHHcCCCEEEEECccc---cCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 79999999 99999999999999999754 5 99999986
No 26
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.68 E-value=5.1e-17 Score=141.92 Aligned_cols=126 Identities=14% Similarity=0.245 Sum_probs=91.1
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc---
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG--- 210 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~--- 210 (276)
+.++.+.++|++ ..++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++.
T Consensus 11 l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~~~~~~ 77 (214)
T 1sgw_A 11 LEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL------------KPLKGEIIYNGVPITKVK 77 (214)
T ss_dssp EEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEEGGGGG
T ss_pred EEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCeEEEECCEEhhhhc
Confidence 345677888877 7899999888 89999999999999999999999965 899999999987642
Q ss_pred ----ccccccCCCCcee------------------e-------eEEEEe-------c----------------CCCcEEE
Q 023887 211 ----EVSTKSGRGKHTT------------------R-------HVSLLP-------L----------------SGGGYLA 238 (276)
Q Consensus 211 ----~vs~~~g~gk~tt------------------~-------~~~~~~-------~----------------~~~~~ii 238 (276)
-+...+..-...| . ...+-. + ++..+++
T Consensus 78 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllL 157 (214)
T 1sgw_A 78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVL 157 (214)
T ss_dssp GGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 1111110000000 0 000000 0 0011899
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
|||.. ++|....+.+.+.+.++.+.+ +|++||+++
T Consensus 158 DEPts---~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 158 DDPVV---AIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp ESTTT---TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred ECCCc---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 99999 999999999999999997655 999999974
No 27
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.68 E-value=3.3e-17 Score=146.56 Aligned_cols=126 Identities=23% Similarity=0.294 Sum_probs=91.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
.++.+.++|++...++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|.++|+++...+.
T Consensus 9 ~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 76 (257)
T 1g6h_A 9 RTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL------------KADEGRVYFENKDITNKEP 76 (257)
T ss_dssp EEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECTTCCH
T ss_pred EEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCEECCCCCH
Confidence 3456778887777899999988 89999999999999999999999965 8999999999976532110
Q ss_pred -------------ccCCCCcee--eeEEE--------------------------------E---ec-------------
Q 023887 215 -------------KSGRGKHTT--RHVSL--------------------------------L---PL------------- 231 (276)
Q Consensus 215 -------------~~g~gk~tt--~~~~~--------------------------------~---~~------------- 231 (276)
.+..-.+.| .++.+ + .+
T Consensus 77 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSG 156 (257)
T ss_dssp HHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCH
T ss_pred HHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCH
Confidence 000000000 00000 0 00
Q ss_pred --------------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 232 --------------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 232 --------------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
++..+|+|||+. ++|....+.+.+.+.++.+.| +|++|||++
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts---~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 214 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIA---GVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 000179999999 999999999999999998766 999999974
No 28
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.68 E-value=2.9e-17 Score=147.44 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=94.2
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc---
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE--- 211 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~--- 211 (276)
.++.+.++|++...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|.++..
T Consensus 8 ~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 8 HVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE------------KPSEGAIIVNGQNINLVRD 75 (262)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECCEEEC
T ss_pred EEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEcccccc
Confidence 3466788887777899999888 89999999999999999999999965 8999999999977641
Q ss_pred -------cccccCCCCceeeeEEEEecCCCc-------------------------------------------------
Q 023887 212 -------VSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------- 235 (276)
Q Consensus 212 -------vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------- 235 (276)
.+... . +...+.+++++|....
T Consensus 76 ~~~~~~~~~~~~-~-~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 153 (262)
T 1b0u_A 76 KDGQLKVADKNQ-L-RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH 153 (262)
T ss_dssp TTSSEEESCHHH-H-HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG
T ss_pred ccccccccChhh-H-HHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCccc
Confidence 11000 0 0011234444332110
Q ss_pred ---------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 ---------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ---------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+|+|||+. ++|....+.+.+.+.++.+.| +|++|||+
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts---~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 213 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTS---ALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTT---TSCHHHHHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 79999999 999999999999999998766 99999986
No 29
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.67 E-value=1.9e-17 Score=150.00 Aligned_cols=121 Identities=18% Similarity=0.290 Sum_probs=91.8
Q ss_pred CceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc--cc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG--EV 212 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~--~v 212 (276)
.++.+.++|++...++++++.+ +|++++|+|+||||||||+|+|+|.. +|++|+|.++|.++. ..
T Consensus 23 ~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~~~~~~~ 90 (279)
T 2ihy_A 23 QLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE------------PATSGTVNLFGKMPGKVGY 90 (279)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEETTBCCC---C
T ss_pred EEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCeEEEECCEEcccccC
Confidence 3566788887777899999888 89999999999999999999999965 899999999997654 11
Q ss_pred ccccCCCCceeeeEEEEecC------------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLS------------------------------------------------------------ 232 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~------------------------------------------------------------ 232 (276)
+... ..+.+++++|.
T Consensus 91 ~~~~-----~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 165 (279)
T 2ihy_A 91 SAET-----VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTG 165 (279)
T ss_dssp CHHH-----HHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHH
T ss_pred CHHH-----HcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHH
Confidence 1000 00111111110
Q ss_pred --------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--e--EEEeeeCC
Q 023887 233 --------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--L--LYMIHMLH 276 (276)
Q Consensus 233 --------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--i--i~~~H~~~ 276 (276)
+..+|+|||+. ++|....+.+.+.+.++.+.| + |++|||++
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts---~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAA---GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE 224 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcc---ccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH
Confidence 00079999999 999999999999999997655 8 99999963
No 30
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.67 E-value=2.6e-17 Score=153.87 Aligned_cols=122 Identities=21% Similarity=0.242 Sum_probs=98.1
Q ss_pred ceeEEEecCCcc--chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVESKL--GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~~~~--~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|++.. .++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|+++....
T Consensus 6 i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD------------VPSTGELYFDDRLVASNG 73 (353)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS------------CCSEEEEEETTEEEEETT
T ss_pred EEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECCEECcccc
Confidence 456778887666 788888888 89999999999999999999999965 999999999998875421
Q ss_pred cccCCCCceeeeEEEEecCCCc----------------------------------------------------------
Q 023887 214 TKSGRGKHTTRHVSLLPLSGGG---------------------------------------------------------- 235 (276)
Q Consensus 214 ~~~g~gk~tt~~~~~~~~~~~~---------------------------------------------------------- 235 (276)
. ... +...+.+++++|....
T Consensus 74 ~-~~~-~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRval 151 (353)
T 1oxx_K 74 K-LIV-PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVAL 151 (353)
T ss_dssp E-ESS-CGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHH
T ss_pred c-ccC-ChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 0 000 1123568888876422
Q ss_pred ----------EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 ----------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 ----------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||....+++.+.+.++.+. | +|++|||+
T Consensus 152 AraL~~~P~lLLLDEP~s---~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 201 (353)
T 1oxx_K 152 ARALVKDPSLLLLDEPFS---NLDARMRDSARALVKEVQSRLGVTLLVVSHDP 201 (353)
T ss_dssp HHHHTTCCSEEEEESTTT---TSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred HHHHHhCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 99999999999999999754 5 99999986
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.67 E-value=2.1e-17 Score=146.63 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=88.5
Q ss_pred ceeEEEec-CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSV-ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~-~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++| ++...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++...+.
T Consensus 4 ~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~ 71 (243)
T 1mv5_A 4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY------------QPTAGEITIDGQPIDNISL 71 (243)
T ss_dssp EEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS------------CCSBSCEEETTEESTTTSC
T ss_pred EEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCcEEEECCEEhhhCCH
Confidence 35567778 4556788888888 89999999999999999999999955 8999999999977643221
Q ss_pred ccCCCCceeeeEEEEecC--------------------------------------------------------------
Q 023887 215 KSGRGKHTTRHVSLLPLS-------------------------------------------------------------- 232 (276)
Q Consensus 215 ~~g~gk~tt~~~~~~~~~-------------------------------------------------------------- 232 (276)
.. ..+.+++++|.
T Consensus 72 ~~-----~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~q 146 (243)
T 1mv5_A 72 EN-----WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQ 146 (243)
T ss_dssp SC-----CTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHH
T ss_pred HH-----HHhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHH
Confidence 00 00001111110
Q ss_pred -----------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 -----------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 -----------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+++|||+. ++|....+.+.+.+.++. .+ +|++||++
T Consensus 147 rv~lAral~~~p~lllLDEPts---~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~ 198 (243)
T 1mv5_A 147 RLAIARAFLRNPKILMLDEATA---SLDSESESMVQKALDSLM-KGRTTLVIAHRL 198 (243)
T ss_dssp HHHHHHHHHHCCSEEEEECCSC---SSCSSSCCHHHHHHHHHH-TTSEEEEECCSH
T ss_pred HHHHHHHHhcCCCEEEEECCcc---cCCHHHHHHHHHHHHHhc-CCCEEEEEeCCh
Confidence 11279999999 999999999999999987 45 99999986
No 32
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.67 E-value=4.3e-17 Score=147.06 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=90.4
Q ss_pred CceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 136 GYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 136 ~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
.++.+.++|++ ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|.++..
T Consensus 18 ~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~------------~p~~G~I~~~g~~i~~ 85 (271)
T 2ixe_A 18 KFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY------------QPTGGKVLLDGEPLVQ 85 (271)
T ss_dssp EEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEEGGG
T ss_pred EEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCCEEEECCEEccc
Confidence 35667788865 46788888888 89999999999999999999999955 8999999999977643
Q ss_pred cccccCCCCceeeeEEEEecC-----------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLS----------------------------------------------------------- 232 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~----------------------------------------------------------- 232 (276)
.+... ..+.+++++|.
T Consensus 86 ~~~~~-----~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG 160 (271)
T 2ixe_A 86 YDHHY-----LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGG 160 (271)
T ss_dssp BCHHH-----HHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHH
T ss_pred CCHHH-----HhccEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHH
Confidence 21100 00111111110
Q ss_pred --------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 233 --------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 233 --------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
+..+|+|||.. +||......+.+.+.++.+ .+ +|++||++
T Consensus 161 q~QRv~lAraL~~~p~lllLDEPts---~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 161 QRQAVALARALIRKPRLLILDNATS---ALDAGNQLRVQRLLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTT---TCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcc---CCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 01179999999 9999999999999999865 35 99999986
No 33
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.65 E-value=4.5e-17 Score=152.04 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=94.0
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|++. .++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|+++.....
T Consensus 4 ~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~~~g~~i~~~~~- 69 (348)
T 3d31_A 4 IESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH------------VPDSGRILLDGKDVTDLSP- 69 (348)
T ss_dssp EEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCH-
T ss_pred EEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC------------CCCCcEEEECCEECCCCch-
Confidence 35677888766 888888888 89999999999999999999999965 9999999999987654221
Q ss_pred cCCCCceeeeEEEEecCCCc------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGGG------------------------------------------------------------ 235 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~~------------------------------------------------------------ 235 (276)
..+.+++++|....
T Consensus 70 ------~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~ 143 (348)
T 3d31_A 70 ------EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALV 143 (348)
T ss_dssp ------HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTT
T ss_pred ------hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 12345555554211
Q ss_pred -----EEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 236 -----YLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 236 -----~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+|+|||.. +||....+.+.+.+.++.+. | +|++|||+
T Consensus 144 ~~P~lLLLDEP~s---~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~ 188 (348)
T 3d31_A 144 TNPKILLLDEPLS---ALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188 (348)
T ss_dssp SCCSEEEEESSST---TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCEEEEECccc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 79999999 99999999999999999764 5 99999985
No 34
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.64 E-value=8e-17 Score=142.91 Aligned_cols=114 Identities=19% Similarity=0.196 Sum_probs=87.3
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK 215 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~ 215 (276)
++.+.++|+. .++++++.+ + ++++|+|+||||||||+++|+|.. +|++|+|.++|.++.....
T Consensus 4 ~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g~~~~~~~~- 67 (240)
T 2onk_A 4 KVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV------------KPDRGEVRLNGADITPLPP- 67 (240)
T ss_dssp EEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS------------CCSEEEEEETTEECTTSCT-
T ss_pred EEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEECCEECCcCch-
Confidence 3456677754 478888887 7 999999999999999999999965 8999999999987643211
Q ss_pred cCCCCceeeeEEEEecCCC-------------------------------------------------------------
Q 023887 216 SGRGKHTTRHVSLLPLSGG------------------------------------------------------------- 234 (276)
Q Consensus 216 ~g~gk~tt~~~~~~~~~~~------------------------------------------------------------- 234 (276)
..+.+++++|...
T Consensus 68 ------~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral 141 (240)
T 2onk_A 68 ------ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARAL 141 (240)
T ss_dssp ------TTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHH
T ss_pred ------hhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 0112233332210
Q ss_pred -----cEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 235 -----GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 235 -----~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
.+++|||+. ++|....+.+.+.+.++.+. | +|++||++
T Consensus 142 ~~~p~lllLDEPts---~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~ 187 (240)
T 2onk_A 142 VIQPRLLLLDEPLS---AVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187 (240)
T ss_dssp TTCCSSBEEESTTS---SCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH
T ss_pred HcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 079999999 99999999999999999753 5 99999986
No 35
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.64 E-value=4.2e-17 Score=145.27 Aligned_cols=127 Identities=19% Similarity=0.221 Sum_probs=90.6
Q ss_pred ceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc--
Q 023887 137 YEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS-- 213 (276)
Q Consensus 137 ~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs-- 213 (276)
++.+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|.. .++|++|+|.++|.++...+
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~----------~~~p~~G~I~~~g~~~~~~~~~ 75 (250)
T 2d2e_A 6 IRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP----------EYTVERGEILLDGENILELSPD 75 (250)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCT----------TCEEEEEEEEETTEECTTSCHH
T ss_pred EEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------CCCCCceEEEECCEECCCCCHH
Confidence 456778887777889999888 89999999999999999999999962 14899999999987653211
Q ss_pred -----------cccCCCCcee-----------------------eeE-------EE-E--------e-cCC---------
Q 023887 214 -----------TKSGRGKHTT-----------------------RHV-------SL-L--------P-LSG--------- 233 (276)
Q Consensus 214 -----------~~~g~gk~tt-----------------------~~~-------~~-~--------~-~~~--------- 233 (276)
..+..-.+.| ..+ .+ - . ++.
T Consensus 76 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iA 155 (250)
T 2d2e_A 76 ERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEIL 155 (250)
T ss_dssp HHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHH
T ss_pred HHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 0000000000 000 00 0 0 111
Q ss_pred -------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 -------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 -------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+|+|||+. ++|....+.+.+.+.++.+.+ +|++|||++
T Consensus 156 raL~~~p~lllLDEPts---~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 156 QLLVLEPTYAVLDETDS---GLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp HHHHHCCSEEEEECGGG---TTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred HHHHcCCCEEEEeCCCc---CCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 1289999999 999999999999999997665 999999863
No 36
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.64 E-value=1.1e-16 Score=144.11 Aligned_cols=129 Identities=19% Similarity=0.163 Sum_probs=92.2
Q ss_pred cCceeEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
+.++.+.++|++...++++++.+ +|++++|+|+||||||||+|+|+|.. .++|++|+|.++|.++...+
T Consensus 21 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~----------~~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 21 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE----------DYEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCT----------TCEEEEEEEEETTEEGGGSC
T ss_pred EEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----------CCCCCCeEEEECCEECCcCC
Confidence 34567788887777899999888 89999999999999999999999963 13799999999987653211
Q ss_pred c-------------ccCCCCce----------------------e-----eeE-------EEEe----------c-----
Q 023887 214 T-------------KSGRGKHT----------------------T-----RHV-------SLLP----------L----- 231 (276)
Q Consensus 214 ~-------------~~g~gk~t----------------------t-----~~~-------~~~~----------~----- 231 (276)
. .+..-... . ..+ .+-. +
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHH
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 0 00000000 0 000 0000 0
Q ss_pred -----------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 232 -----------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 232 -----------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+..+|+|||+. ++|....+.+.+.+.++.+.| +|++|||++
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts---~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDS---GLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTT---TCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred HHHHHHHHHHhCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 001189999999 999999999999999997666 999999863
No 37
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.63 E-value=2.7e-16 Score=140.99 Aligned_cols=121 Identities=18% Similarity=0.192 Sum_probs=89.0
Q ss_pred cCceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|+|.. +| +|+|.++|.++.
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY------------DA-EGDIKIGGKNVN 84 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CC-EEEEEETTEEGG
T ss_pred EEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC------------CC-CeEEEECCEEhh
Confidence 3456778888652 4788888888 89999999999999999999999954 66 799999997764
Q ss_pred ccccccCCCCceeeeEEEEecC----------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLS---------------------------------------------------------- 232 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~---------------------------------------------------------- 232 (276)
..+... ..+.+++++|.
T Consensus 85 ~~~~~~-----~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgG 159 (260)
T 2ghi_A 85 KYNRNS-----IRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGG 159 (260)
T ss_dssp GBCHHH-----HHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHH
T ss_pred hcCHHH-----HhccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHH
Confidence 321100 00111111110
Q ss_pred --------------CCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 233 --------------GGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 233 --------------~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+..+|+|||.. ++|....+.+.+.+.++.+.. +|++||+++
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts---~LD~~~~~~i~~~l~~l~~~~tviivtH~~~ 215 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATS---SLDSKTEYLFQKAVEDLRKNRTLIIIAHRLS 215 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCC---TTCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred HHHHHHHHHHHHcCCCEEEEECccc---cCCHHHHHHHHHHHHHhcCCCEEEEEcCCHH
Confidence 11179999999 999999999999999987522 999999863
No 38
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.62 E-value=3.7e-16 Score=140.40 Aligned_cols=125 Identities=17% Similarity=0.226 Sum_probs=88.9
Q ss_pred ceeEEEecC--C---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 137 YEPLFCSVE--S---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 137 ~~~~~~s~~--~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++.+.++|+ + ...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|.++.
T Consensus 5 ~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~------------~p~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI------------EPTSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS------------CCSEEEEEETTEECC
T ss_pred EEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCCCcEEEECCEECc
Confidence 356677786 3 35788888888 89999999999999999999999965 899999999986542
Q ss_pred ---------cccccc---------------CCCCceee------------eEEEE--ec---------------------
Q 023887 211 ---------EVSTKS---------------GRGKHTTR------------HVSLL--PL--------------------- 231 (276)
Q Consensus 211 ---------~vs~~~---------------g~gk~tt~------------~~~~~--~~--------------------- 231 (276)
-+...+ +...+... ...+- ..
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAra 152 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASV 152 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHH
Confidence 111110 00000000 00000 00
Q ss_pred ---CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 232 ---SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 232 ---~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
++..+|+|||+. ++|....+.+.+.+.++.+.| +|++||+++
T Consensus 153 L~~~p~lllLDEPts---~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~ 199 (266)
T 2yz2_A 153 IVHEPDILILDEPLV---GLDREGKTDLLRIVEKWKTLGKTVILISHDIE 199 (266)
T ss_dssp HTTCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT
T ss_pred HHcCCCEEEEcCccc---cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 001189999999 999999999999999997656 999999974
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.60 E-value=8.5e-16 Score=151.91 Aligned_cols=120 Identities=19% Similarity=0.274 Sum_probs=93.9
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|++ ...++++++.+ +|++++++|+||+|||||+|+|+|. |+|++|+|.++|.++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~------------~~p~~G~i~~~g~~~~~ 409 (582)
T 3b5x_A 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF------------YDVDSGSICLDGHDVRD 409 (582)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCCEEEECCEEhhh
Confidence 445678888864 56899999988 8999999999999999999999994 59999999999987754
Q ss_pred cccccCCCCceeeeEEEEecCC----------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSG---------------------------------------------------------- 233 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~---------------------------------------------------------- 233 (276)
.+... .++.+++++|++
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgG 484 (582)
T 3b5x_A 410 YKLTN-----LRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGG 484 (582)
T ss_pred CCHHH-----HhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHH
Confidence 32111 122233333321
Q ss_pred ---------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 ---------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ---------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+++|||+. ++|..+.+.+.+.+.++.+ + +|++||++
T Consensus 485 q~qr~~iAral~~~p~illlDEpts---~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~ 539 (582)
T 3b5x_A 485 QRQRVAIARALLRDAPVLILDEATS---ALDTESERAIQAALDELQK-NKTVLVIAHRL 539 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEEECccc---cCCHHHHHHHHHHHHHHcC-CCEEEEEecCH
Confidence 0179999999 9999999999999999875 5 99999986
No 40
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.60 E-value=4.1e-16 Score=139.06 Aligned_cols=107 Identities=24% Similarity=0.288 Sum_probs=82.0
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeE
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHV 226 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~ 226 (276)
..++++++.+ +|++++|+|+||+|||||+|+|+|.. +|+ |+|.++|.++...+... ..+.+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~------------~p~-G~i~~~g~~~~~~~~~~-----~~~~i 75 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------------SGK-GSIQFAGQPLEAWSATK-----LALHR 75 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS------------CCE-EEEEETTEEGGGSCHHH-----HHHHE
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------------CCC-eEEEECCEECCcCCHHH-----HhceE
Confidence 4677777777 89999999999999999999999965 899 99999997654321100 01112
Q ss_pred EEEec---------------------------------------------------------------CCC-------cE
Q 023887 227 SLLPL---------------------------------------------------------------SGG-------GY 236 (276)
Q Consensus 227 ~~~~~---------------------------------------------------------------~~~-------~~ 236 (276)
++++| .+. .+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ll 155 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLL 155 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEE
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEE
Confidence 22222 123 47
Q ss_pred EEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 237 LADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 237 iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
++|||+. ++|....+.+.+.+.++.+.| +|++|||+
T Consensus 156 lLDEPts---~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 193 (249)
T 2qi9_C 156 LLDEPMN---SLDVAQQSALDKILSALSQQGLAIVMSSHDL 193 (249)
T ss_dssp EESSTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEECCcc---cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 9999999 999999999999999997656 99999986
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.60 E-value=5.2e-16 Score=153.38 Aligned_cols=122 Identities=17% Similarity=0.200 Sum_probs=98.5
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|.+ ...++++++.+ +|++++++|+||+|||||+++|.|. |+|++|+|.++|.++..
T Consensus 340 i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~------------~~p~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF------------YDVTSGQILIDGHNIKD 407 (578)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS------------SCCSEEEEEETTEEGGG
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC------------CCCCCcEEEECCEEhhh
Confidence 345677888864 35789999888 8999999999999999999999994 59999999999998876
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+... .++.+++++|++..
T Consensus 408 ~~~~~-----~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq 482 (578)
T 4a82_A 408 FLTGS-----LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 482 (578)
T ss_dssp SCHHH-----HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred CCHHH-----HhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHH
Confidence 54322 34556666665322
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. ++++||+++
T Consensus 483 ~Qrv~lAral~~~p~illlDEpts---~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 537 (578)
T 4a82_A 483 KQRLSIARIFLNNPPILILDEATS---ALDLESESIIQEALDVLSKDRTTLIVAHRLS 537 (578)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTT---TCCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred HHHHHHHHHHHcCCCEEEEECccc---cCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 79999999 999999999999998886544 999999874
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.60 E-value=5.7e-16 Score=153.48 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=98.1
Q ss_pred cCceeEEEecC--CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|. ....++++++.+ +|++++++|+||+|||||+|+|.|. |+|++|+|.++|.++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~------------~~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL------------IDPERGRVEVDELDVRT 409 (587)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS------------SCCSEEEEEESSSBGGG
T ss_pred EEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------ccCCCcEEEECCEEccc
Confidence 34567788884 346789999888 8999999999999999999999994 59999999999999877
Q ss_pred cccccCCCCceeeeEEEEecCCCc--------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGGG-------------------------------------------------------- 235 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~~-------------------------------------------------------- 235 (276)
.+... .++.+++++|++..
T Consensus 410 ~~~~~-----~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 410 VKLKD-----LRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp BCHHH-----HHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred CCHHH-----HHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence 65322 34556666665322
Q ss_pred ----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 ----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 ----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+++|||+. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 485 rQrv~lARal~~~p~illlDEpts---~LD~~~~~~i~~~l~~~~~~~tvi~itH~l 538 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDCTS---SVDPITEKRILDGLKRYTKGCTTFIITQKI 538 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESCCT---TSCHHHHHHHHHHHHHHSTTCEEEEEESCH
T ss_pred HHHHHHHHHHHcCCCEEEEECCcc---cCCHHHHHHHHHHHHHhCCCCEEEEEecCh
Confidence 79999999 999999999999999886432 99999986
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.60 E-value=7.5e-16 Score=152.89 Aligned_cols=122 Identities=16% Similarity=0.242 Sum_probs=98.5
Q ss_pred cCceeEEEecCC-ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 135 WGYEPLFCSVES-KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 135 ~~~~~~~~s~~~-~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+.++.+.++|.. ...++++++.+ +|++++++|+||+|||||+|+|+|. |+|++|+|.++|.++...
T Consensus 355 i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~------------~~p~~G~i~~~g~~i~~~ 422 (598)
T 3qf4_B 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF------------YDVDRGQILVDGIDIRKI 422 (598)
T ss_dssp EEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS------------SCCSEEEEEETTEEGGGS
T ss_pred EEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------cCCCCeEEEECCEEhhhC
Confidence 345667778854 45789998888 8999999999999999999999994 599999999999988765
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.+++++|++..
T Consensus 423 ~~~~-----~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 423 KRSS-----LRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp CHHH-----HHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred CHHH-----HHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 4322 34556666665321
Q ss_pred ---------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 ---------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 ---------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+...+.+.+.++.+.. +|++||+++
T Consensus 498 Qrv~iAral~~~p~illlDEpts---~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 551 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATS---NVDTKTEKSIQAAMWKLMEGKTSIIIAHRLN 551 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCT---TCCHHHHHHHHHHHHHHHTTSEEEEESCCTT
T ss_pred HHHHHHHHHhcCCCEEEEECCcc---CCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 79999999 999999999999999986532 999999974
No 44
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.59 E-value=1.3e-15 Score=136.00 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=85.5
Q ss_pred ceeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc
Q 023887 137 YEPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST 214 (276)
Q Consensus 137 ~~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~ 214 (276)
++.+.++|+ +...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.+. ..++-+..
T Consensus 7 i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~-~~i~~v~q 73 (253)
T 2nq2_C 7 VENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH------------RPIQGKIEVY-QSIGFVPQ 73 (253)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS------------CCSEEEEEEC-SCEEEECS
T ss_pred EeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEEe-ccEEEEcC
Confidence 456778887 667888898888 89999999999999999999999965 8888988532 11211111
Q ss_pred ccCCCCcee------------------------eeE-------EE------------------------EecCCCcEEEe
Q 023887 215 KSGRGKHTT------------------------RHV-------SL------------------------LPLSGGGYLAD 239 (276)
Q Consensus 215 ~~g~gk~tt------------------------~~~-------~~------------------------~~~~~~~~iiD 239 (276)
.+..-.+.| ..+ .+ +...+..+|+|
T Consensus 74 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD 153 (253)
T 2nq2_C 74 FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD 153 (253)
T ss_dssp CCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEES
T ss_pred CCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 110000000 000 00 00001128999
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
||.. ++|....+.+.+.+.++.+. | +|++|||+
T Consensus 154 EPts---~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 189 (253)
T 2nq2_C 154 EPTS---ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189 (253)
T ss_dssp SSST---TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH
T ss_pred CCcc---cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 9999 99999999999999999875 5 99999986
No 45
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.59 E-value=9.8e-16 Score=151.50 Aligned_cols=122 Identities=16% Similarity=0.221 Sum_probs=94.7
Q ss_pred cCceeEEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++|++ ...++++++.+ +|++++++|+||+|||||+++|+|. |+|++|+|.++|.++..
T Consensus 342 i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~------------~~p~~G~i~~~g~~~~~ 409 (582)
T 3b60_A 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF------------YDIDEGHILMDGHDLRE 409 (582)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT------------TCCSEEEEEETTEETTT
T ss_pred EEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc------------cCCCCCeEEECCEEccc
Confidence 345677888863 46788999888 8999999999999999999999994 49999999999987755
Q ss_pred cccccCCCCceeeeEEEEecCCC---------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGG--------------------------------------------------------- 234 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~--------------------------------------------------------- 234 (276)
.+... .++.+++++|++.
T Consensus 410 ~~~~~-----~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgG 484 (582)
T 3b60_A 410 YTLAS-----LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484 (582)
T ss_dssp BCHHH-----HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHH
T ss_pred cCHHH-----HHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHH
Confidence 33211 2223444443210
Q ss_pred ----------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 235 ----------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 235 ----------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
.+++|||+. ++|..+.+.+.+.+.++.+.. ++++||+++
T Consensus 485 q~qrl~iAral~~~p~illlDEpts---~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b60_A 485 QRQRIAIARALLRDSPILILDEATS---ALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTS---SCCHHHHHHHHHHHHHHHTTSEEEEECSCGG
T ss_pred HHHHHHHHHHHHhCCCEEEEECccc---cCCHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 179999999 999999999999999987622 999999863
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.56 E-value=2.1e-15 Score=135.51 Aligned_cols=115 Identities=17% Similarity=0.283 Sum_probs=87.4
Q ss_pred ceeEEEecCC----ccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 137 YEPLFCSVES----KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~----~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
++.+.++|.. ...++++++.++|++++|+|+||+|||||+++|+| ++ |++|+|.++|.++...
T Consensus 4 ~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~G------------l~-p~~G~I~~~g~~~~~~ 70 (263)
T 2pjz_A 4 LKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISG------------LL-PYSGNIFINGMEVRKI 70 (263)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTT------------SS-CCEEEEEETTEEGGGC
T ss_pred EEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhC------------CC-CCCcEEEECCEECcch
Confidence 3456677765 56788888887899999999999999999999999 56 8999999999765321
Q ss_pred ccccCCCCceeeeEE-EEecCC----------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVS-LLPLSG---------------------------------------------------------- 233 (276)
Q Consensus 213 s~~~g~gk~tt~~~~-~~~~~~---------------------------------------------------------- 233 (276)
.. .+.++ +++|.+
T Consensus 71 -~~-------~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAra 142 (263)
T 2pjz_A 71 -RN-------YIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLA 142 (263)
T ss_dssp -SC-------CTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHH
T ss_pred -HH-------hhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 00 01111 111110
Q ss_pred -----CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEeeeCC
Q 023887 234 -----GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIHMLH 276 (276)
Q Consensus 234 -----~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H~~~ 276 (276)
..+++|||+. ++|....+.+.+.+.++.+ .+|++||+++
T Consensus 143 L~~~p~lllLDEPts---~LD~~~~~~l~~~L~~~~~-tviivtHd~~ 186 (263)
T 2pjz_A 143 LASQPEIVGLDEPFE---NVDAARRHVISRYIKEYGK-EGILVTHELD 186 (263)
T ss_dssp HHTCCSEEEEECTTT---TCCHHHHHHHHHHHHHSCS-EEEEEESCGG
T ss_pred HHhCCCEEEEECCcc---ccCHHHHHHHHHHHHHhcC-cEEEEEcCHH
Confidence 1179999999 9999999999999999876 7999999963
No 47
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.56 E-value=2.2e-15 Score=149.36 Aligned_cols=121 Identities=15% Similarity=0.244 Sum_probs=93.0
Q ss_pred cCceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.++.+.++|++. ..++++++.+ +|++++++|+||+|||||+++|+|. |+|++|+|.++|.++.
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~------------~~p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL------------YDPASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS------------SCCSEEEEEETTEETT
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------cCCCCcEEEECCEEhh
Confidence 4456788888642 4788899888 8999999999999999999999994 5999999999998765
Q ss_pred ccccccCCCCceeeeEEEEecCC---------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSG--------------------------------------------------------- 233 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~--------------------------------------------------------- 233 (276)
..+... .++.+++++|++
T Consensus 410 ~~~~~~-----~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~L 484 (595)
T 2yl4_A 410 QLNPVW-----LRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL 484 (595)
T ss_dssp TBCHHH-----HHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCC
T ss_pred hCCHHH-----HHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcC
Confidence 432110 112233332211
Q ss_pred ------------------CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 234 ------------------GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 234 ------------------~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
..+++|||+. ++|..+.+.+.+.+.++.+.. +|++||++
T Consensus 485 SgGq~qrv~iAral~~~p~illlDEpts---~LD~~~~~~i~~~l~~~~~~~tvi~itH~~ 542 (595)
T 2yl4_A 485 SGGQKQRIAIARALLKNPKILLLDEATS---ALDAENEYLVQEALDRLMDGRTVLVIAHRL 542 (595)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCS---SCCHHHHHHHHHHHHHHHTTSEEEEECCCH
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccc---CCCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 1179999999 999999999999999987633 99999986
No 48
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.56 E-value=3.1e-15 Score=132.25 Aligned_cols=123 Identities=19% Similarity=0.225 Sum_probs=84.5
Q ss_pred ceeEEEecC--CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 137 YEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 137 ~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
++.+.++|+ +...++++++.+ +|++++|+|+||||||||+++|+|.. +|++|+|.++|. ++-+.
T Consensus 6 ~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~-i~~v~ 72 (237)
T 2cbz_A 6 VRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM------------DKVEGHVAIKGS-VAYVP 72 (237)
T ss_dssp EEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS------------EEEEEEEEECSC-EEEEC
T ss_pred EEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCCceEEECCE-EEEEc
Confidence 456778886 356788888888 89999999999999999999999965 899999998873 22222
Q ss_pred cccCC-----------C----Cceeee----EEE--------------E-----ec----------------CCCcEEEe
Q 023887 214 TKSGR-----------G----KHTTRH----VSL--------------L-----PL----------------SGGGYLAD 239 (276)
Q Consensus 214 ~~~g~-----------g----k~tt~~----~~~--------------~-----~~----------------~~~~~iiD 239 (276)
..+.. + +..... ..+ + .+ ++..+++|
T Consensus 73 Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD 152 (237)
T 2cbz_A 73 QQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD 152 (237)
T ss_dssp SSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11100 0 000000 000 0 00 11228999
Q ss_pred cCCCCCCCCChhhHHHHHHHHH---HHhhcc--eEEEeeeCC
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFP---EVCAVG--LLYMIHMLH 276 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~---ei~~~~--ii~~~H~~~ 276 (276)
||.. ++|......+.+.+. ++.+ + +|++||+++
T Consensus 153 EPts---~LD~~~~~~i~~~l~~~~~~~~-~~tviivtH~~~ 190 (237)
T 2cbz_A 153 DPLS---AVDAHVGKHIFENVIGPKGMLK-NKTRILVTHSMS 190 (237)
T ss_dssp STTT---TSCHHHHHHHHHHTTSTTSTTT-TSEEEEECSCST
T ss_pred Cccc---ccCHHHHHHHHHHHHHHHhhcC-CCEEEEEecChH
Confidence 9999 999988888888874 3433 4 999999974
No 49
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.55 E-value=1.3e-15 Score=144.22 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=94.4
Q ss_pred cCceeEEEec--CCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 135 WGYEPLFCSV--ESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 135 ~~~~~~~~s~--~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+.++.+.++| ++...++++++.+ +|++++|+|+||||||||+++|+|.. + ++|+|.++|+++..
T Consensus 20 i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~------------~-~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL------------N-TEGEIQIDGVSWDS 86 (390)
T ss_dssp EEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS------------E-EEEEEEESSCBTTS
T ss_pred EEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC------------C-CCeEEEECCEECCc
Confidence 3456788889 4566899999988 89999999999999999999999954 6 88999999988765
Q ss_pred cccccCCCCceeeeEEEEecCCC---------------------------------------------------------
Q 023887 212 VSTKSGRGKHTTRHVSLLPLSGG--------------------------------------------------------- 234 (276)
Q Consensus 212 vs~~~g~gk~tt~~~~~~~~~~~--------------------------------------------------------- 234 (276)
.+... ..+.+++++|.+.
T Consensus 87 ~~~~~-----~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqr 161 (390)
T 3gd7_A 87 ITLEQ-----WRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHK 161 (390)
T ss_dssp SCHHH-----HHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHH
T ss_pred CChHH-----HhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHH
Confidence 44321 2234555554321
Q ss_pred --------------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 235 --------------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 235 --------------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
.+|+|||.. +||......+.+.+.++.... +|++||+++
T Consensus 162 QRvalARAL~~~P~lLLLDEPts---~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e 215 (390)
T 3gd7_A 162 QLMCLARSVLSKAKILLLDEPSA---HLDPVTYQIIRRTLKQAFADCTVILCEARIE 215 (390)
T ss_dssp HHHHHHHHHHTTCCEEEEESHHH---HSCHHHHHHHHHHHHTTTTTSCEEEECSSSG
T ss_pred HHHHHHHHHhcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 179999999 999988899998888865433 999999863
No 50
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.54 E-value=2.3e-15 Score=161.16 Aligned_cols=122 Identities=16% Similarity=0.274 Sum_probs=103.7
Q ss_pred cCceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.++.+.++|.+. +.++++++.+ +|++++|||+||+|||||+++|.| +|+|++|+|.+||.++.
T Consensus 1077 I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r------------l~~p~~G~I~iDG~di~ 1144 (1321)
T 4f4c_A 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLER------------FYDTLGGEIFIDGSEIK 1144 (1321)
T ss_dssp EEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTT------------SSCCSSSEEEETTEETT
T ss_pred EEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhc------------CccCCCCEEEECCEEhh
Confidence 4467788899643 4789999998 899999999999999999999999 67999999999999999
Q ss_pred ccccccCCCCceeeeEEEEecCCCc-------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------- 235 (276)
+++.+. .++++++++|++-.
T Consensus 1145 ~i~~~~-----lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LS 1219 (1321)
T 4f4c_A 1145 TLNPEH-----TRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLS 1219 (1321)
T ss_dssp TBCHHH-----HHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSC
T ss_pred hCCHHH-----HHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccC
Confidence 887654 67788999887532
Q ss_pred -------------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 -------------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 -------------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+|+|||+. ++|..+.+.+.+.+.+..+.. +|+++|.++
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTS---aLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLs 1277 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATS---ALDTESEKVVQEALDRAREGRTCIVIAHRLN 1277 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCC---STTSHHHHHHHHHHTTTSSSSEEEEECSSSS
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccc---cCCHHHHHHHHHHHHHHcCCCEEEEeccCHH
Confidence 69999999 999999888988888776543 999999764
No 51
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.54 E-value=3.5e-15 Score=131.21 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=50.0
Q ss_pred ceeEEEecC--CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 137 YEPLFCSVE--SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 137 ~~~~~~s~~--~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
++.+.++|. ....++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|
T Consensus 9 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~g 69 (229)
T 2pze_A 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL------------EPSEGKIKHSG 69 (229)
T ss_dssp EEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS------------CCSEEEEEECS
T ss_pred EEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------cCCccEEEECC
Confidence 456777784 346788888888 89999999999999999999999965 89999998887
No 52
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.52 E-value=1.1e-14 Score=139.06 Aligned_cols=110 Identities=24% Similarity=0.357 Sum_probs=78.5
Q ss_pred ccccchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecC
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVE 145 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~ 145 (276)
.+....+.++|.+++|+|+..+... ...+.+++ +..++|+++|+||+|+.+.... ...+.++++ +++.+|+.
T Consensus 74 ~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l---~~~~~pvilv~NK~D~~~~~~~---~~~~~~lg~~~~~~iSA~ 147 (436)
T 2hjg_A 74 QQAEIAMDEADVIIFMVNGREGVTAADEEVAKIL---YRTKKPVVLAVNKLDNTEMRAN---IYDFYSLGFGEPYPISGT 147 (436)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH---TTCCSCEEEEEECCCC-----C---CCSSGGGSSCCCEECBTT
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH---HHcCCCEEEEEECccCccchhh---HHHHHHcCCCCeEEEeCc
Confidence 3444578899999999999765322 12233333 5678999999999999754211 122445677 78999999
Q ss_pred CccchHHHHhhc----c---------C-CEEEEEecCCCChhHHHHHHcCCC
Q 023887 146 SKLGLDSLLQRL----R---------D-QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 146 ~~~~l~~l~~~l----~---------g-~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.++.+|...+ + + .+++++|.+|||||||+|.|.+..
T Consensus 148 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 148 HGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp TTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 999988877653 2 1 379999999999999999999854
No 53
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.48 E-value=2.5e-14 Score=153.26 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=103.3
Q ss_pred cCceeEEEecCC---ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVES---KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~---~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.++.+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+| +|+|++|+|.++|.++.
T Consensus 416 I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~------------~~~~~~G~I~idG~~i~ 483 (1321)
T 4f4c_A 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR------------YYDVLKGKITIDGVDVR 483 (1321)
T ss_dssp EEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT------------SSCCSEEEEEETTEETT
T ss_pred EEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcc------------ccccccCcccCCCccch
Confidence 345678888853 35789999888 899999999999999999999999 66999999999999998
Q ss_pred ccccccCCCCceeeeEEEEecCCCc-------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------- 235 (276)
+++... .+.++++++|++-.
T Consensus 484 ~~~~~~-----lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGG 558 (1321)
T 4f4c_A 484 DINLEF-----LRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGG 558 (1321)
T ss_dssp TSCHHH-----HHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHH
T ss_pred hccHHH-----HhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHH
Confidence 887554 66788999887532
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+|+|+|+. ++|..+...+.+.+.++.+.- +|++||.++
T Consensus 559 QkQRiaiARAl~~~~~IliLDE~tS---aLD~~te~~i~~~l~~~~~~~T~iiiaHrls 614 (1321)
T 4f4c_A 559 QKQRIAIARALVRNPKILLLDEATS---ALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614 (1321)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTT---TSCTTTHHHHHHHHHHHHTTSEEEEECSCTT
T ss_pred HHHHHHHHHHHccCCCEEEEecccc---cCCHHHHHHHHHHHHHHhCCCEEEEEcccHH
Confidence 79999999 999988888999998877543 999999874
No 54
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.48 E-value=1.1e-13 Score=132.28 Aligned_cols=110 Identities=28% Similarity=0.393 Sum_probs=80.4
Q ss_pred ccchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCc
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESK 147 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 147 (276)
....+.++|.+++|+|+..+... ...+.+++ +..++|+++|+||+|+.+... ......+.++++ +++.+|+.++
T Consensus 75 ~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l---~~~~~p~ilv~NK~D~~~~~~-~~~~~~~~~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 75 TLNMIREADLVLFVVDGKRGITKEDESLADFL---RKSTVDTILVANKAENLREFE-REVKPELYSLGFGEPIPVSAEHN 150 (439)
T ss_dssp HHHHHTTCSEEEEEEETTTCCCHHHHHHHHHH---HHHTCCEEEEEESCCSHHHHH-HHTHHHHGGGSSCSCEECBTTTT
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHH---HHcCCCEEEEEeCCCCccccH-HHHHHHHHhcCCCCEEEEeccCC
Confidence 34568999999999999765322 22344444 446899999999999854311 122133456788 7899999999
Q ss_pred cchHHHHhhc----c----C----------CEEEEEecCCCChhHHHHHHcCCC
Q 023887 148 LGLDSLLQRL----R----D----------QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 148 ~~l~~l~~~l----~----g----------~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|...+ + . .+++|+|+||||||||+|.|+|..
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 9988876553 1 1 279999999999999999999965
No 55
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.47 E-value=2.4e-14 Score=152.95 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=99.1
Q ss_pred cCceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 135 WGYEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 135 ~~~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+.++.+.++|... ..++++++.+ +|++++|+|+||+|||||+++|.| +|+|++|+|.++|.++.
T Consensus 388 i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g------------~~~~~~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR------------LYDPLDGMVSIDGQDIR 455 (1284)
T ss_dssp EEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTT------------SSCCSEEEEEETTEEGG
T ss_pred EEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------------CCCCCCeEEEECCEEHH
Confidence 4456788888642 4789999888 899999999999999999999999 55999999999999987
Q ss_pred ccccccCCCCceeeeEEEEecCCCc-------------------------------------------------------
Q 023887 211 EVSTKSGRGKHTTRHVSLLPLSGGG------------------------------------------------------- 235 (276)
Q Consensus 211 ~vs~~~g~gk~tt~~~~~~~~~~~~------------------------------------------------------- 235 (276)
..+... .++.+++++|++..
T Consensus 456 ~~~~~~-----~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgG 530 (1284)
T 3g5u_A 456 TINVRY-----LREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGG 530 (1284)
T ss_dssp GSCHHH-----HHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHH
T ss_pred hCCHHH-----HHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHH
Confidence 765432 45567777776422
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
+|+|||+. ++|..+...+.+.+.++.+.. +|++||++
T Consensus 531 q~QriaiARal~~~p~iliLDEpts---~LD~~~~~~i~~~l~~~~~~~t~i~itH~l 585 (1284)
T 3g5u_A 531 QKQRIAIARALVRNPKILLLDEATS---ALDTESEAVVQAALDKAREGRTTIVIAHRL 585 (1284)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTC---SSCHHHHHHHHHHHHHHHTTSEEEEECSCH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCC---CCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 79999999 999988888888888776532 99999986
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.47 E-value=4e-14 Score=151.28 Aligned_cols=120 Identities=17% Similarity=0.319 Sum_probs=95.8
Q ss_pred ceeEEEecCCc---cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 137 YEPLFCSVESK---LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 137 ~~~~~~s~~~~---~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
++.+.++|.+. ..++++++.+ +|++++|+|+||+|||||+++|.| +|+|++|+|.++|.++...
T Consensus 1033 ~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g------------~~~p~~G~I~i~g~~i~~~ 1100 (1284)
T 3g5u_A 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER------------FYDPMAGSVFLDGKEIKQL 1100 (1284)
T ss_dssp EEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTT------------SSCCSEEEEESSSSCTTSS
T ss_pred EEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhc------------CcCCCCCEEEECCEEcccC
Confidence 34567777543 4788999888 899999999999999999999999 5599999999999988765
Q ss_pred ccccCCCCceeeeEEEEecCCCc---------------------------------------------------------
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------------------------------------- 235 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------------------------------------- 235 (276)
+... .++.+++++|++..
T Consensus 1101 ~~~~-----~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgG 1175 (1284)
T 3g5u_A 1101 NVQW-----LRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGG 1175 (1284)
T ss_dssp CHHH-----HTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHH
T ss_pred CHHH-----HHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHH
Confidence 4322 34456666665311
Q ss_pred -----------------EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 236 -----------------YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 236 -----------------~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
+++|||+. ++|..+.+.+.+.+.+..+.. +|++||+++
T Consensus 1176 q~Qrv~iARal~~~p~iLiLDEpTs---~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~ 1231 (1284)
T 3g5u_A 1176 QKQRIAIARALVRQPHILLLDEATS---ALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231 (1284)
T ss_dssp HHHHHHHHHHHHHCCSSEEEESCSS---SCCHHHHHHHHHHHHHHSSSSCEEEECSCTT
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcc---cCCHHHHHHHHHHHHHhCCCCEEEEEecCHH
Confidence 79999999 999999999999998865422 999999974
No 57
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.42 E-value=6.2e-13 Score=127.62 Aligned_cols=110 Identities=24% Similarity=0.340 Sum_probs=75.0
Q ss_pred ccccchhccccEEEEEEEcCCCCCC-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecC
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVE 145 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~ 145 (276)
.+....+.++|.+++|+|+..+... ...+.++| +..++|+++|+||+|+.+.... ...+.++++ .++.+|+.
T Consensus 94 ~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l---~~~~~pvilV~NK~D~~~~~~~---~~e~~~lg~~~~~~iSA~ 167 (456)
T 4dcu_A 94 QQAEIAMDEADVIIFMVNGREGVTAADEEVAKIL---YRTKKPVVLAVNKLDNTEMRAN---IYDFYSLGFGEPYPISGT 167 (456)
T ss_dssp HHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHH---TTCCSCEEEEEECC------------CCSGGGSSSSEEECCTT
T ss_pred HHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHH---HHcCCCEEEEEECccchhhhhh---HHHHHHcCCCceEEeecc
Confidence 3344578899999999998754222 12333333 5679999999999999754211 123445666 57889999
Q ss_pred CccchHHHHhhc----c----------CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 146 SKLGLDSLLQRL----R----------DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 146 ~~~~l~~l~~~l----~----------g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.++.+|...+ + ...++++|.+|||||||+|.|.+..
T Consensus 168 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 168 HGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp TCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCC
Confidence 998888876653 1 2478999999999999999999854
No 58
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.39 E-value=1.2e-13 Score=125.75 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=42.9
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|.++|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~g 99 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL------------EPSEGKIKHSG 99 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS------------CEEEEEEECCS
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC------------CCCCcEEEECC
Confidence 45688888887 89999999999999999999999965 89999998876
No 59
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.35 E-value=5.4e-13 Score=130.97 Aligned_cols=121 Identities=21% Similarity=0.211 Sum_probs=81.9
Q ss_pred eEEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccce---------eeccc
Q 023887 139 PLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK---------WFEDQ 207 (276)
Q Consensus 139 ~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i---------~~~g~ 207 (276)
.+.++|+.. ..+.+++ .+ +|++++|+|+||+|||||+|+|+|.. +|++|++ .++|.
T Consensus 26 ~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~------------~p~~G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 26 DCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL------------IPNLCGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp CEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS------------CCCTTTTCCSHHHHHHHTTTS
T ss_pred CcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCCccCcchhhhHHhhCCc
Confidence 567778654 3677777 66 89999999999999999999999965 7888885 34554
Q ss_pred ccccccc-----ccCCC---------Cc----e---------------------------eeeEE--------------E
Q 023887 208 RVGEVST-----KSGRG---------KH----T---------------------------TRHVS--------------L 228 (276)
Q Consensus 208 ~~~~vs~-----~~g~g---------k~----t---------------------------t~~~~--------------~ 228 (276)
.+..... ..+.+ .. + .+.+. .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAra 172 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAA 172 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHH
Confidence 3321100 00000 00 0 00000 0
Q ss_pred EecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 229 LPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 229 ~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+...+..+|+|||+. +||....+.+.+.+.++.+.| +|++|||+
T Consensus 173 L~~~P~lLlLDEPTs---~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~ 218 (538)
T 1yqt_A 173 LLRNATFYFFDEPSS---YLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218 (538)
T ss_dssp HHSCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HhcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 000112289999999 999999999999999998766 99999986
No 60
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.31 E-value=6.3e-13 Score=132.22 Aligned_cols=122 Identities=20% Similarity=0.203 Sum_probs=82.6
Q ss_pred eeEEEecCCc-cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccce---------eecc
Q 023887 138 EPLFCSVESK-LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK---------WFED 206 (276)
Q Consensus 138 ~~~~~s~~~~-~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i---------~~~g 206 (276)
+.+.++|+.. ..+.+++ .+ +|++++|+|+||+|||||+|+|+|.. +|++|++ .++|
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll------------~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL------------IPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS------------CCCTTTTCCCHHHHHHHTTT
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC------------CCCCCccccccchhhheeCC
Confidence 3567777654 3677777 65 89999999999999999999999966 7888885 3455
Q ss_pred ccccccc-----cccCCC---------C----ce---------------------------eeeEE--------------
Q 023887 207 QRVGEVS-----TKSGRG---------K----HT---------------------------TRHVS-------------- 227 (276)
Q Consensus 207 ~~~~~vs-----~~~g~g---------k----~t---------------------------t~~~~-------------- 227 (276)
..+.... .....+ . .+ .+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAr 241 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAA 241 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHH
Confidence 4432210 000000 0 00 00000
Q ss_pred EEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 228 LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 228 ~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+...+..+|+|||+. +||......+.+.+.++.+.| +|++|||+
T Consensus 242 aL~~~P~lLlLDEPTs---~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl 288 (607)
T 3bk7_A 242 ALLRKAHFYFFDEPSS---YLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288 (607)
T ss_dssp HHHSCCSEEEEECTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHhcCCCEEEEECCcc---cCCHHHHHHHHHHHHHHHhcCCEEEEEecCh
Confidence 0000112289999999 999999999999999998766 99999986
No 61
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.31 E-value=2.3e-12 Score=128.24 Aligned_cols=102 Identities=22% Similarity=0.274 Sum_probs=69.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceee-------------
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR------------- 224 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~------------- 224 (276)
+|++++|+|+||+|||||+++|+|.. +|++|+|.+. ..++-+..........|.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~------------~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~ 447 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE------------EPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKIDSSKLN 447 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS------------CCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC------------CCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhhccCCC
Confidence 79999999999999999999999966 8888888652 222222211100000000
Q ss_pred --------------------eEE--------------EEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--
Q 023887 225 --------------------HVS--------------LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG-- 267 (276)
Q Consensus 225 --------------------~~~--------------~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~-- 267 (276)
.+. .+..++..+|+|||+. +||......+.+.+.++.+ .|
T Consensus 448 ~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~---~LD~~~~~~l~~~l~~l~~~~g~t 524 (607)
T 3bk7_A 448 SNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSA---YLDVEQRLAVSRAIRHLMEKNEKT 524 (607)
T ss_dssp CHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT---TCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHHHhCCCE
Confidence 000 0000111289999999 9999999999999999964 44
Q ss_pred eEEEeeeC
Q 023887 268 LLYMIHML 275 (276)
Q Consensus 268 ii~~~H~~ 275 (276)
+|++|||+
T Consensus 525 vi~vsHd~ 532 (607)
T 3bk7_A 525 ALVVEHDV 532 (607)
T ss_dssp EEEECSCH
T ss_pred EEEEeCCH
Confidence 99999996
No 62
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.30 E-value=2.4e-12 Score=126.38 Aligned_cols=102 Identities=23% Similarity=0.297 Sum_probs=69.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCcee--------------
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT-------------- 223 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt-------------- 223 (276)
+|++++|+|+||+|||||+++|+|.. +|++|+|.+. ..++-+..........|
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~------------~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~ 377 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE------------EPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLSKIDASKLN 377 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS------------CCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHHhhhccCCC
Confidence 79999999999999999999999966 8888888652 22222221110000000
Q ss_pred -------------------eeEE--------------EEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--
Q 023887 224 -------------------RHVS--------------LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG-- 267 (276)
Q Consensus 224 -------------------~~~~--------------~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~-- 267 (276)
+.+. .+...+..+|+|||+. ++|......+.+.+.++.+ .|
T Consensus 378 ~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~---~LD~~~~~~i~~~l~~l~~~~g~t 454 (538)
T 1yqt_A 378 SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSA---YLDVEQRLAVSRAIRHLMEKNEKT 454 (538)
T ss_dssp CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT---TCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc---cCCHHHHHHHHHHHHHHHHhCCCE
Confidence 0000 0000112289999999 9999999999999999974 44
Q ss_pred eEEEeeeC
Q 023887 268 LLYMIHML 275 (276)
Q Consensus 268 ii~~~H~~ 275 (276)
+|++|||+
T Consensus 455 vi~vsHd~ 462 (538)
T 1yqt_A 455 ALVVEHDV 462 (538)
T ss_dssp EEEECSCH
T ss_pred EEEEeCCH
Confidence 99999996
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.28 E-value=1.8e-12 Score=127.24 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=33.1
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+|+|||+. +||......+.+.+.++.+ + +|++||++
T Consensus 160 lllDEPts---~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl 197 (538)
T 3ozx_A 160 YIFDQPSS---YLDVRERMNMAKAIRELLK-NKYVIVVDHDL 197 (538)
T ss_dssp EEEESTTT---TCCHHHHHHHHHHHHHHCT-TSEEEEECSCH
T ss_pred EEEECCcc---cCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh
Confidence 89999999 9999999999999999976 5 99999986
No 64
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.26 E-value=3.2e-12 Score=125.54 Aligned_cols=104 Identities=21% Similarity=0.191 Sum_probs=74.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCcee--------------
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTT-------------- 223 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt-------------- 223 (276)
+|++++|+|+||+|||||+++|+|.. +|++|+|.+++..++.++.........|
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~------------~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 360 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI------------TADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALS 360 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS------------CCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC------------CCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccc
Confidence 79999999999999999999999966 8999999888776654332211000000
Q ss_pred --------------------eeEE--------------EEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc-c-
Q 023887 224 --------------------RHVS--------------LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV-G- 267 (276)
Q Consensus 224 --------------------~~~~--------------~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~-~- 267 (276)
+.+. .+...+..+|+|||+. +||.....++.+.+.++.+. +
T Consensus 361 ~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~---gLD~~~~~~i~~~l~~l~~~~g~ 437 (538)
T 3ozx_A 361 TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSS---YLDVEERYIVAKAIKRVTRERKA 437 (538)
T ss_dssp TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTT---TCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc---CCCHHHHHHHHHHHHHHHHhCCC
Confidence 0000 0000111289999999 99999999999999999753 5
Q ss_pred -eEEEeeeCC
Q 023887 268 -LLYMIHMLH 276 (276)
Q Consensus 268 -ii~~~H~~~ 276 (276)
++++|||++
T Consensus 438 tvi~vsHdl~ 447 (538)
T 3ozx_A 438 VTFIIDHDLS 447 (538)
T ss_dssp EEEEECSCHH
T ss_pred EEEEEeCCHH
Confidence 899999963
No 65
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.26 E-value=2.2e-12 Score=128.30 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=34.4
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+++|||+. +||......+.+.+.++.+.| +|++||++
T Consensus 243 lllDEPts---~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl 281 (608)
T 3j16_B 243 YMFDEPSS---YLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281 (608)
T ss_dssp EEEECTTT---TCCHHHHHHHHHHHHGGGTTTCEEEEECSCH
T ss_pred EEEECccc---CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 89999999 999999999999999998876 99999986
No 66
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.13 E-value=8.6e-13 Score=110.23 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=61.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccccc----ccCCCCceeeeEEE-----
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVST----KSGRGKHTTRHVSL----- 228 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~----~~g~gk~tt~~~~~----- 228 (276)
+|++++++|+||||||||++++.+.......+..-.+..++.|.+.+.+........ ....+ .......
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~s 85 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLG--KLTVVDATNVQE 85 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTT--CCEEEESCCCSH
T ss_pred CCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCC--CeEEEECCCCCH
Confidence 799999999999999999994332110000000000224555555554421111000 00000 0000000
Q ss_pred ------------EecCCCcEEEecCCCCCCCCChh----------------hHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 229 ------------LPLSGGGYLADTPGFNQPSLLKV----------------TKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 229 ------------~~~~~~~~iiDtPg~~~~~l~~~----------------~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+-..+..+++|||.. ++|.. ....+.+.+.++.+.| +|++||++
T Consensus 86 ~g~~qrv~iAral~~~p~~lllDEPt~---~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~ 159 (171)
T 4gp7_A 86 SARKPLIEMAKDYHCFPVAVVFNLPEK---VCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP 159 (171)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCCHH---HHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH
T ss_pred HHHHHHHHHHHHcCCcEEEEEEeCCHH---HHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH
Confidence 001123489999998 88776 4477788888887667 99999986
No 67
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.12 E-value=9.9e-11 Score=116.45 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=33.8
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhh-cc--eEEEeeeC
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~~--ii~~~H~~ 275 (276)
.+|+|||+. +||.....++.+.+.++.. .| +|++|||+
T Consensus 488 lLlLDEPT~---gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl 528 (608)
T 3j16_B 488 IYLIDEPSA---YLDSEQRIICSKVIRRFILHNKKTAFIVEHDF 528 (608)
T ss_dssp EEEECCTTT---TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred EEEEECCCC---CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 389999999 9999999999999999864 45 99999996
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.10 E-value=3.3e-12 Score=132.60 Aligned_cols=55 Identities=24% Similarity=0.383 Sum_probs=46.2
Q ss_pred EEEecCC--ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 140 LFCSVES--KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 140 ~~~s~~~--~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
+.++|.. ...++++++.+ +|++++|+|+||+|||||+++|+|.. +|++|+|++++
T Consensus 677 Ls~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll------------~P~sG~I~~~~ 734 (986)
T 2iw3_A 677 MEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL------------LPTSGEVYTHE 734 (986)
T ss_dssp EEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS------------CCSEEEEEECT
T ss_pred eEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC------------CCCceEEEEcC
Confidence 4555643 34688888887 89999999999999999999999966 89999999875
No 69
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.09 E-value=1.7e-11 Score=122.89 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=35.6
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+|+|||+. +||......+.+.+.++.+.| +|++|||++
T Consensus 225 lLlLDEPts---gLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 225 LYVLDEPSI---GLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp EEEEECTTT---TCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred EEEEECCcc---CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 589999999 999999999999999998776 999999963
No 70
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.07 E-value=1.4e-10 Score=103.79 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=67.0
Q ss_pred chHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc-ccceeeccccccccccccCCCCceeeeE-
Q 023887 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRVGEVSTKSGRGKHTTRHV- 226 (276)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~-~G~i~~~g~~~~~vs~~~g~gk~tt~~~- 226 (276)
.+++++ .-+|+.++|+|+||||||||+++|+| +++|+ +|+|.++|.++..+.... .+ .-.+.
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g------------~~~~~~~G~I~~~g~~i~~~~~~~-~~--~v~q~~ 79 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMID------------YINQTKSYHIITIEDPIEYVFKHK-KS--IVNQRE 79 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHH------------HHHHHCCCEEEEEESSCCSCCCCS-SS--EEEEEE
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHH------------hCCCCCCCEEEEcCCcceeecCCc-ce--eeeHHH
Confidence 577777 33899999999999999999999999 45888 999999988765443110 00 00000
Q ss_pred -------------EEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 227 -------------SLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 227 -------------~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+.+++..+++|||. |... +...+... ..| +++++|+.+
T Consensus 80 ~gl~~~~l~~~la~aL~~~p~illlDEp~------D~~~---~~~~l~~~-~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 80 VGEDTKSFADALRAALREDPDVIFVGEMR------DLET---VETALRAA-ETGHLVFGTLHTNT 134 (261)
T ss_dssp BTTTBSCHHHHHHHHHHHCCSEEEESCCC------SHHH---HHHHHHHH-HTTCEEEEEECCSS
T ss_pred hCCCHHHHHHHHHHHHhhCCCEEEeCCCC------CHHH---HHHHHHHH-ccCCEEEEEeCcch
Confidence 0001245668999997 3333 33344433 345 899999853
No 71
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.06 E-value=4.2e-11 Score=103.78 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=34.7
Q ss_pred ecCCccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccccee
Q 023887 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKW 203 (276)
Q Consensus 143 s~~~~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~ 203 (276)
+|++...++++ -+|++++|+|+||+|||||+++|+| + +|++|+|.
T Consensus 9 ~~g~~~~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~G------------l-~p~~G~I~ 53 (208)
T 3b85_A 9 TLGQKHYVDAI---DTNTIVFGLGPAGSGKTYLAMAKAV------------Q-ALQSKQVS 53 (208)
T ss_dssp SHHHHHHHHHH---HHCSEEEEECCTTSSTTHHHHHHHH------------H-HHHTTSCS
T ss_pred CHhHHHHHHhc---cCCCEEEEECCCCCCHHHHHHHHhc------------C-CCcCCeee
Confidence 34444445554 3799999999999999999999999 4 67777764
No 72
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.06 E-value=1.9e-10 Score=114.42 Aligned_cols=102 Identities=16% Similarity=0.077 Sum_probs=62.6
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-cccceeeccccccccccccCCCCceeeeEEEEec--------
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-ILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPL-------- 231 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~-------- 231 (276)
.++|+|+||||||||+|+|+|.. .| ++|.|+++|.++....... .+.....++++++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~------------~P~~sG~vt~~g~~i~~~~~~~--~~~~~~~i~~v~Q~~~l~~~~ 112 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA------------LPRGSGIVTRCPLVLKLKKLVN--EDKWRGKVSYQDYEIEISDAS 112 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------------------CCCSCEEEEEEECSS--SSCCEEEESCC---CCCCCHH
T ss_pred eEEEECCCCChHHHHHHHHhCCC------------CCCCCCeEEEcCEEEEEecCCc--cccceeEEeeecccccCCCHH
Confidence 49999999999999999999965 67 7999999998753221110 0011222222221
Q ss_pred ---------------------------------CCCcEEEecCCCCC---CCCChhhHHHHHHHHHHHhhc--c--eEEE
Q 023887 232 ---------------------------------SGGGYLADTPGFNQ---PSLLKVTKQSLAQTFPEVCAV--G--LLYM 271 (276)
Q Consensus 232 ---------------------------------~~~~~iiDtPg~~~---~~l~~~~~~~l~~~f~ei~~~--~--ii~~ 271 (276)
.+..+++|+||+.. .++|......+.+++.++... + ++++
T Consensus 113 tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vv 192 (608)
T 3szr_A 113 EVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVV 192 (608)
T ss_dssp HHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 24568999998653 356777788889999886443 3 6788
Q ss_pred eeeCC
Q 023887 272 IHMLH 276 (276)
Q Consensus 272 ~H~~~ 276 (276)
+|+++
T Consensus 193 t~~~d 197 (608)
T 3szr_A 193 PSNVD 197 (608)
T ss_dssp ESSSC
T ss_pred eccch
Confidence 88764
No 73
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.06 E-value=4.2e-10 Score=103.93 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=71.6
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeee
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRH 225 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~ 225 (276)
...++.+++.+ +|+.++|+|+||+|||||+|+|+|. ++|++|.|.++|.+.-... . ....
T Consensus 158 ~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~------------~~~~~g~i~i~~~~e~~~~--~-----~~~~ 218 (330)
T 2pt7_A 158 EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF------------IPKEERIISIEDTEEIVFK--H-----HKNY 218 (330)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG------------SCTTSCEEEEESSCCCCCS--S-----CSSE
T ss_pred HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC------------CcCCCcEEEECCeeccccc--c-----chhE
Confidence 34678888887 8999999999999999999999995 4899999999987522111 0 1223
Q ss_pred EEEEec---------------CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhc--ceEEEeeeCC
Q 023887 226 VSLLPL---------------SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAV--GLLYMIHMLH 276 (276)
Q Consensus 226 ~~~~~~---------------~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~--~ii~~~H~~~ 276 (276)
++++.. .+..+++|||.. . ++.+.+..+... ++++++|..+
T Consensus 219 i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~---~-------e~~~~l~~~~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 219 TQLFFGGNITSADCLKSCLRMRPDRIILGELRS---S-------EAYDFYNVLCSGHKGTLTTLHAGS 276 (330)
T ss_dssp EEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS---T-------HHHHHHHHHHTTCCCEEEEEECSS
T ss_pred EEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh---H-------HHHHHHHHHhcCCCEEEEEEcccH
Confidence 444421 234489999986 1 234566666543 3899999864
No 74
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.97 E-value=6.5e-11 Score=118.71 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=35.4
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+|+|||+. +||..+...+.+.+.++.+.| +|++|||+
T Consensus 567 llllDEPt~---~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~ 606 (670)
T 3ux8_A 567 LYILDEPTT---GLHVDDIARLLDVLHRLVDNGDTVLVIEHNL 606 (670)
T ss_dssp EEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 689999999 999999999999999998776 99999996
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.94 E-value=3.9e-10 Score=101.35 Aligned_cols=65 Identities=29% Similarity=0.510 Sum_probs=37.8
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCC----CcE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG----GGY 236 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~----~~~ 236 (276)
+++|+|+||+|||||||+|.|.. .|++|++.++|.++.... ..+.++++++.. ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~------------~~~~G~i~~~g~~i~~~~--------~~~~i~~v~q~~~~~~~lt 63 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ------------VSRKASSWNREEKIPKTV--------EIKAIGHVIEEGGVKMKLT 63 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH------------C------------CCCCC--------SCCEEEESCC----CCEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC------------CCCCCccccCCcccCcce--------eeeeeEEEeecCCCcCCce
Confidence 58999999999999999999955 899999999998752211 234677777754 458
Q ss_pred EEecCCCCC
Q 023887 237 LADTPGFNQ 245 (276)
Q Consensus 237 iiDtPg~~~ 245 (276)
+.|+|++..
T Consensus 64 v~d~~~~g~ 72 (270)
T 3sop_A 64 VIDTPGFGD 72 (270)
T ss_dssp EECCCC--C
T ss_pred EEechhhhh
Confidence 999999954
No 76
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.93 E-value=1.9e-10 Score=112.16 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=81.2
Q ss_pred CccchHHHHh-hc-cCCEEEEEecCCCChhHHHHH--HcCCCCCCccccccCcccccccceeecccccccc----ccccC
Q 023887 146 SKLGLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINA--LRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV----STKSG 217 (276)
Q Consensus 146 ~~~~l~~l~~-~l-~g~~v~lvG~sGvGKSTLiN~--L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v----s~~~g 217 (276)
...+++++++ .+ +|++++|+|+||||||||+++ +.|.. +|.+|.+++++.+...- ....|
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~------------~~~~g~i~v~g~~~~~~~~~~~~~~g 91 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII------------EFDEPGVFVTFEETPQDIIKNARSFG 91 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------------HHCCCEEEEESSSCHHHHHHHHGGGT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH------------hCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence 4568999999 77 899999999999999999999 67844 78899999988663210 00001
Q ss_pred CCC-cee--eeEEEEec-----------------------------CCCcEEEecCCCCCCC--CChhhHHHHHHHHHHH
Q 023887 218 RGK-HTT--RHVSLLPL-----------------------------SGGGYLADTPGFNQPS--LLKVTKQSLAQTFPEV 263 (276)
Q Consensus 218 ~gk-~tt--~~~~~~~~-----------------------------~~~~~iiDtPg~~~~~--l~~~~~~~l~~~f~ei 263 (276)
.-- ... ..+..+.. ..+.+++|+|....+. +|....+.+.+++.++
T Consensus 92 ~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l 171 (525)
T 1tf7_A 92 WDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARL 171 (525)
T ss_dssp CCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHH
T ss_pred CChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 000 000 00111110 1123799999975544 4566778899999999
Q ss_pred hhcc--eEEEeeeCC
Q 023887 264 CAVG--LLYMIHMLH 276 (276)
Q Consensus 264 ~~~~--ii~~~H~~~ 276 (276)
++.| +|+++|+++
T Consensus 172 ~~~g~tvl~itH~~~ 186 (525)
T 1tf7_A 172 KQIGATTVMTTERIE 186 (525)
T ss_dssp HHHTCEEEEEEECSS
T ss_pred HHCCCEEEEEecCCC
Confidence 8877 899999874
No 77
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.89 E-value=1.7e-09 Score=102.91 Aligned_cols=71 Identities=24% Similarity=0.211 Sum_probs=53.2
Q ss_pred cchHHHHhhc-cCC--------------------EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecc
Q 023887 148 LGLDSLLQRL-RDQ--------------------TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 148 ~~l~~l~~~l-~g~--------------------~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
..++++++.+ +|+ +++|+|+||||||||||+|+|.. +|++|+|.+++
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~------------~p~~GsI~~~g 104 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG------------NEEEGAAKTGV 104 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC------------TTSTTSCCCCC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC------------CccCceEEECC
Confidence 4577888777 777 99999999999999999999965 89999999888
Q ss_pred ccccccccccCCCCceeeeEEEEecC---CCcEEEecCCCC
Q 023887 207 QRVGEVSTKSGRGKHTTRHVSLLPLS---GGGYLADTPGFN 244 (276)
Q Consensus 207 ~~~~~vs~~~g~gk~tt~~~~~~~~~---~~~~iiDtPg~~ 244 (276)
.++.. . .++++. +...+.|+||+.
T Consensus 105 ~~~t~-------------~-~~v~q~~~~~~ltv~D~~g~~ 131 (413)
T 1tq4_A 105 VEVTM-------------E-RHPYKHPNIPNVVFWDLPGIG 131 (413)
T ss_dssp ----C-------------C-CEEEECSSCTTEEEEECCCGG
T ss_pred eecce-------------e-EEeccccccCCeeehHhhccc
Confidence 75421 0 123332 366899999984
No 78
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.88 E-value=2.3e-10 Score=105.93 Aligned_cols=61 Identities=23% Similarity=0.127 Sum_probs=49.4
Q ss_pred EEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccccc
Q 023887 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEV 212 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~v 212 (276)
+..+|.....++++++.+ +|.+++|+|+||||||||+|+|.|.. .|++|+|.+.+.+....
T Consensus 35 ~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~------------~~~~g~v~i~~~d~~~~ 96 (337)
T 2qm8_A 35 ADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL------------TAAGHKVAVLAVDPSST 96 (337)
T ss_dssp HHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH------------HHTTCCEEEEEECGGGG
T ss_pred cccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh------------hhCCCEEEEEEEcCccc
Confidence 333444445688888877 78999999999999999999999944 88999999988877543
No 79
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.85 E-value=2.1e-10 Score=99.48 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=30.4
Q ss_pred CCcEEEecCCCCCCCCC-----hhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 233 GGGYLADTPGFNQPSLL-----KVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 233 ~~~~iiDtPg~~~~~l~-----~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
+..+++|+|.. .++ ....+.+.+++.++++.| ++++||++
T Consensus 136 p~~lilDep~~---~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~ 182 (251)
T 2ehv_A 136 AKRLVIDSIPS---IALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp CSEEEEECHHH---HHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred CCEEEEccHHH---HHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 45589999997 443 334555888888888777 89999986
No 80
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.85 E-value=9.6e-10 Score=105.33 Aligned_cols=125 Identities=15% Similarity=0.114 Sum_probs=84.5
Q ss_pred eeEEEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc---ccccc
Q 023887 138 EPLFCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ---RVGEV 212 (276)
Q Consensus 138 ~~~~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~---~~~~v 212 (276)
+.+...|. ....++++ +.+ +|++++|+|+||+|||||+++|+|.. +|++|.|.++|+ ++...
T Consensus 135 ~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~------------~~~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 135 TPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT------------RADVIVVGLIGERGREVKDF 201 (438)
T ss_dssp CCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS------------CCSEEEEEEESCCHHHHHHH
T ss_pred eccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc------------CCCeEEEEEeceecHHHHHH
Confidence 44455565 34578888 776 89999999999999999999999954 899999999998 44432
Q ss_pred ccccCCCCceeeeEEEEecCCCc--------------------------EEEec-----------------CCCCCCCCC
Q 023887 213 STKSGRGKHTTRHVSLLPLSGGG--------------------------YLADT-----------------PGFNQPSLL 249 (276)
Q Consensus 213 s~~~g~gk~tt~~~~~~~~~~~~--------------------------~iiDt-----------------Pg~~~~~l~ 249 (276)
....-......+.+.++++.... .++|. |-. ..++|
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~-t~glD 280 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPA-TKGYP 280 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCCC-SSSCC
T ss_pred HHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHHhCCCcc-cccCC
Confidence 21100000133456677663211 34443 211 33678
Q ss_pred hhhHHHHHHHHHHHhh---c-c-------eEEEeeeCC
Q 023887 250 KVTKQSLAQTFPEVCA---V-G-------LLYMIHMLH 276 (276)
Q Consensus 250 ~~~~~~l~~~f~ei~~---~-~-------ii~~~H~~~ 276 (276)
......+.+++.++.+ . | +++++||++
T Consensus 281 ~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~ 318 (438)
T 2dpy_A 281 PSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ 318 (438)
T ss_dssp TTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC
T ss_pred HHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc
Confidence 8888889999988876 2 4 677889874
No 81
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.82 E-value=1e-09 Score=100.28 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=37.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+|++++|+|+||||||||++.|++ ++.|++|+|.+.+.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag------------ll~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR------------YYQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH------------HHHTTTCCEEEECCCCSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH------------HHHhcCCEEEEEeecCCC
Confidence 588999999999999999999999 458999999999988754
No 82
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.82 E-value=2.5e-09 Score=111.06 Aligned_cols=42 Identities=33% Similarity=0.494 Sum_probs=37.2
Q ss_pred EEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcC
Q 023887 140 LFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+.++|++...++++++.+ +|++++|+|+||+|||||+++|+|
T Consensus 441 ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 441 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 566777777888888888 899999999999999999999984
No 83
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.81 E-value=5.9e-10 Score=103.48 Aligned_cols=78 Identities=19% Similarity=0.180 Sum_probs=50.9
Q ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHhhhc--CceeEEEecCCccchHHHHh-------h------------------cc
Q 023887 106 TGIPLTLALNKVELVDEEVLNTWKSRLHTW--GYEPLFCSVESKLGLDSLLQ-------R------------------LR 158 (276)
Q Consensus 106 ~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~l~~l~~-------~------------------l~ 158 (276)
..++.++++||+|+.++...+.|..+++.+ +......+.....+...+.. . ..
T Consensus 87 ~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 166 (357)
T 2e87_A 87 DRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLE 166 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSCCCCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence 355677899999999988888888777653 33322222111111111111 0 13
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++++|+||||||||+|.|.+..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999853
No 84
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.78 E-value=7.4e-09 Score=87.34 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=27.1
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++ +.+ +|.+++|+|+||||||||+|+|.|..
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34555 333 78899999999999999999999854
No 85
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.76 E-value=1.9e-09 Score=89.50 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=44.2
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
...++.+++.+ +|++++|+|+||+|||||+++|+| .. |++|+|.++|..+.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g------------~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQ------------GI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHH------------HT-TCCSCCCCCTTTCE
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHH------------hC-CCCCeEEECCEeee
Confidence 34677888887 899999999999999999999999 44 88999999988764
No 86
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.76 E-value=1.2e-08 Score=97.27 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=50.7
Q ss_pred EEecCCccchHHHHhhc-cCCE--EEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC
Q 023887 141 FCSVESKLGLDSLLQRL-RDQT--TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG 217 (276)
Q Consensus 141 ~~s~~~~~~l~~l~~~l-~g~~--v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g 217 (276)
.++|+... ++++++.+ +|.+ ++|+|+||+|||||||+|+|.. ++|..+..... +
T Consensus 22 ~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------------------l~g~~~~~~~~--~ 78 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------------------FEGEPATHTQP--G 78 (427)
T ss_dssp CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------------------C-------CCS--S
T ss_pred EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------------------ccCCcCCCCCc--c
Confidence 44555555 89999988 8999 9999999999999999999954 11222222111 1
Q ss_pred CCCceeeeEEEEecCC----CcEEEecCCCCC
Q 023887 218 RGKHTTRHVSLLPLSG----GGYLADTPGFNQ 245 (276)
Q Consensus 218 ~gk~tt~~~~~~~~~~----~~~iiDtPg~~~ 245 (276)
.+...++++++.. ...++|+|++..
T Consensus 79 ---~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 79 ---VQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp ---CEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred ---ceEeeEEEEeecCccccccchhhhhhhhh
Confidence 1345677777764 357999999943
No 87
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.74 E-value=5.2e-09 Score=100.84 Aligned_cols=43 Identities=26% Similarity=0.217 Sum_probs=37.8
Q ss_pred HHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccc-c-eeecc
Q 023887 152 SLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-S-KWFED 206 (276)
Q Consensus 152 ~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G-~-i~~~g 206 (276)
++++.+ +|++++|+|+||||||||+++|+|.. .|++| + |++++
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~------------~p~~G~~pI~vdg 175 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA------------LKFNAYQPLYINL 175 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT------------HHHHCCCCEEEEC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc------------cccCCceeEEEcC
Confidence 577776 89999999999999999999999965 88889 8 87776
No 88
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.73 E-value=1.1e-08 Score=83.77 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=58.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccc--ceeeccccccccccccCCCCceeeeEEEEecCCCc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG--SKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG 235 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G--~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~ 235 (276)
+|+.++|+|+||+|||||++++.+.. .+ +| .+++++.+.... .+......
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~------------~~-~g~~~~~~~~~~~~~~---------------~~~~~~~l 86 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA------------LE-AGKNAAYIDAASMPLT---------------DAAFEAEY 86 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH------------HT-TTCCEEEEETTTSCCC---------------GGGGGCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH------------Hh-cCCcEEEEcHHHhhHH---------------HHHhCCCE
Confidence 79999999999999999999999854 33 35 455544432211 01123577
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHhhcc---eEEEee
Q 023887 236 YLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG---LLYMIH 273 (276)
Q Consensus 236 ~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~---ii~~~H 273 (276)
+++|+|+. ++....+.+.+++.++.+.+ ++++||
T Consensus 87 LilDE~~~----~~~~~~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 87 LAVDQVEK----LGNEEQALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp EEEESTTC----CCSHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred EEEeCccc----cChHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 89999987 44444778888888888765 455555
No 89
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.72 E-value=2.9e-09 Score=92.19 Aligned_cols=49 Identities=31% Similarity=0.348 Sum_probs=31.5
Q ss_pred CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 146 SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 146 ~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+...++++++.+ +|++++|+|+||||||||+++|+| ++ | |+|.+ +.++.
T Consensus 9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g------------~~-p--G~i~~-g~~~~ 58 (218)
T 1z6g_A 9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLN------------EF-P--NYFYF-SVSCT 58 (218)
T ss_dssp -------------CCCCEEEECSTTSSHHHHHHHHHH------------HS-T--TTEEE-CCCEE
T ss_pred ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHh------------hC-C--CcEEE-eeccc
Confidence 345688999988 899999999999999999999999 33 4 88887 65543
No 90
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.70 E-value=3e-09 Score=92.72 Aligned_cols=39 Identities=31% Similarity=0.350 Sum_probs=31.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc--cccceeecccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP--ILGSKWFEDQR 208 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p--~~G~i~~~g~~ 208 (276)
+|+.++|+||||||||||+++|+|.. +| ..|.|.+.+.+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~------------~p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ------------PLYDTQVSVSHTTRQ 55 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS------------CTTTEEECCCEECSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC------------CCCceEEEEEecCCC
Confidence 79999999999999999999999965 43 56777665543
No 91
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.68 E-value=5.6e-08 Score=80.65 Aligned_cols=76 Identities=24% Similarity=0.389 Sum_probs=46.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEE
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~ii 238 (276)
...++++|++|||||||+|.|.+.. .....+...+ +|.....+..+....++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~------------------------~~~~~~~~~~----~t~~~~~~~~~~~~~l~ 74 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK------------------------NLARTSSKPG----KTQTLNFYIINDELHFV 74 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-----------------------------------------CCEEEEEETTTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC------------------------CccccCCCCC----ceeeEEEEEECCcEEEE
Confidence 4689999999999999999999843 0111222223 55556666666678999
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHH
Q 023887 239 DTPGFNQPSLLKVTKQSLAQTFPE 262 (276)
Q Consensus 239 DtPg~~~~~l~~~~~~~l~~~f~e 262 (276)
||||+..........+......+.
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 75 DVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp ECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred ECCCCCccccCHHHHHHHHHHHHH
Confidence 999986655544334444433333
No 92
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.68 E-value=2e-09 Score=101.05 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=33.9
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
..+|+|+|.. +||....+.+.+.+.++.+.. +|++||++
T Consensus 317 ~~LlLDEpt~---~LD~~~~~~l~~~L~~l~~~~~vi~itH~~ 356 (415)
T 4aby_A 317 PSVVFDEVDA---GIGGAAAIAVAEQLSRLADTRQVLVVTHLA 356 (415)
T ss_dssp SEEEESSTTT---TCCHHHHHHHHHHHHHHTTTSEEEEECSCH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 4589999999 999999999999999997422 99999985
No 93
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.67 E-value=4.9e-08 Score=83.01 Aligned_cols=74 Identities=24% Similarity=0.375 Sum_probs=47.6
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecC----CC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS----GG 234 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~----~~ 234 (276)
..+++|+|.+|||||||+|.|.+... ....+...+ +|......... ..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~------------------------~~~~~~~~~----~t~~~~~~~~~~~~~~~ 80 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKR------------------------LAFASKTPG----RTQHINYFSVGPAAEPV 80 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSS------------------------SSCTTCCCC----SCCCEEEEEESCTTSCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCc------------------------ceeecCCCC----cccceEEEEecCCCCCc
Confidence 45899999999999999999998531 112222233 55555555554 46
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHH
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTF 260 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f 260 (276)
..++||||+..........+.....+
T Consensus 81 ~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 81 AHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp EEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred EEEEcCCCCCcccCChhhHHHHHHHH
Confidence 78999999966655443333333333
No 94
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.66 E-value=1.5e-07 Score=77.61 Aligned_cols=73 Identities=30% Similarity=0.438 Sum_probs=48.2
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEEe
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLAD 239 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~iiD 239 (276)
.+++++|.+|||||||+|.|.+.. ....+...+ +|.............++|
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~-------------------------~~~~~~~~~----~t~~~~~~~~~~~~~i~D 74 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK-------------------------IAFVSKTPG----KTRSINFYLVNSKYYFVD 74 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC-------------------------CSCCCSSCC----CCCCEEEEEETTTEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc-------------------------cccccCCCC----CccCeEEEEECCcEEEEE
Confidence 479999999999999999999843 111222222 555566666667789999
Q ss_pred cCCCCCCCCChhhHHHHHHHHH
Q 023887 240 TPGFNQPSLLKVTKQSLAQTFP 261 (276)
Q Consensus 240 tPg~~~~~l~~~~~~~l~~~f~ 261 (276)
|||+.....+....+......+
T Consensus 75 t~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 75 LPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCCccccCChhhHHHHHHHHH
Confidence 9998555444433444444333
No 95
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.66 E-value=2.2e-09 Score=111.05 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=36.2
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
..+|+|||+. +||..+.+.+.+.+.++.+.| +|+++||++
T Consensus 828 ~LLILDEPTs---GLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~ 869 (916)
T 3pih_A 828 TLYILDEPTV---GLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869 (916)
T ss_dssp EEEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4689999999 999999999999999998876 999999973
No 96
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.64 E-value=2.1e-08 Score=85.42 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=30.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
|++++|+|+||+|||||++.|+|.. + ++| +.++|..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~------------~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL------------K-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH------------H-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc------------c-cCC-EEEcCEec
Confidence 5789999999999999999999954 5 667 77666444
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.64 E-value=1.9e-08 Score=85.97 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=24.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|++++|+|+||||||||+++|+|..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999843
No 98
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.63 E-value=1e-07 Score=86.77 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=21.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..++++|.+|||||||+|.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999854
No 99
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.61 E-value=2.3e-08 Score=93.67 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=37.6
Q ss_pred chHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc-ccceeeccccc
Q 023887 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRV 209 (276)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~-~G~i~~~g~~~ 209 (276)
.+.++. .-+|+.++|+|+||||||||+++|++ +++|. +|+|.+.+.++
T Consensus 127 ~l~~l~-~~~g~~i~ivG~~GsGKTTll~~l~~------------~~~~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 127 KVLELC-HRKMGLILVTGPTGSGKSTTIASMID------------YINQTKSYHIITIEDPI 175 (372)
T ss_dssp SHHHHT-TSSSEEEEEECSSSSSHHHHHHHHHH------------HHHHHSCCEEEEEESSC
T ss_pred HHHHHh-hcCCCEEEEECCCCCCHHHHHHHHHh------------hcCcCCCcEEEEecccH
Confidence 345443 22789999999999999999999999 44887 89997666544
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.60 E-value=4.1e-09 Score=88.88 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++|+|+||+|||||+++|+|..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999865
No 101
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.59 E-value=3.4e-09 Score=108.76 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=35.7
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||+. ++|..+.+.+.+.+.++.+.| +|++|||+
T Consensus 753 ~lLILDEPTs---GLD~~~~~~l~~lL~~L~~~G~tVIvisHdl 793 (842)
T 2vf7_A 753 TVYVLDEPTT---GLHPADVERLQRQLVKLVDAGNTVIAVEHKM 793 (842)
T ss_dssp EEEEEECTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 4589999999 999999999999999998876 99999986
No 102
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.58 E-value=2.9e-08 Score=102.97 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=63.3
Q ss_pred HHHHhhc-cCCEEEEEecCCCChhHHHHHH--------cCCCCCCccccccCcccccccc-eeeccccccccccccCCCC
Q 023887 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINAL--------RSSPHASDAADVDNWFEPILGS-KWFEDQRVGEVSTKSGRGK 220 (276)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L--------~g~~~~~~~~~~~~~~~p~~G~-i~~~g~~~~~vs~~~g~gk 220 (276)
+++++.+ +|++++|+||||+||||||+++ .|.. .|.++. +.+...-... .|...
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~------------vpa~~~~~~~~d~i~~~----ig~~d 716 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCF------------VPCESAEVSIVDCILAR----VGAGD 716 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCC------------BSEEEEEEECCSEEEEE----CC---
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCc------------cccccccchHHHHHHHh----cCchh
Confidence 3444444 5899999999999999999999 6633 333322 1111110000 01000
Q ss_pred ceeee-----------EEEE--ecCCCcEEEecCCCCCCCCChhhHHHH-HHHHHHHhhc-c--eEEEeeeC
Q 023887 221 HTTRH-----------VSLL--PLSGGGYLADTPGFNQPSLLKVTKQSL-AQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 221 ~tt~~-----------~~~~--~~~~~~~iiDtPg~~~~~l~~~~~~~l-~~~f~ei~~~-~--ii~~~H~~ 275 (276)
..... ...+ ...+..+|+||||. ++|..+...+ ...+..+.+. + ++++||+.
T Consensus 717 ~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~---GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~ 785 (934)
T 3thx_A 717 SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGR---GTSTYDGFGLAWAISEYIATKIGAFCMFATHFH 785 (934)
T ss_dssp ------CHHHHHHHHHHHHHHHCCTTCEEEEESCSC---SSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG
T ss_pred hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCC---CCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH
Confidence 00000 0011 12456799999999 9998877777 6677777763 5 99999985
No 103
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.58 E-value=4.8e-09 Score=87.30 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=61.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccc-e-eecccccc-ccccccCCCCceeeeEEEEecCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS-K-WFEDQRVG-EVSTKSGRGKHTTRHVSLLPLSGG 234 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~-i-~~~g~~~~-~vs~~~g~gk~tt~~~~~~~~~~~ 234 (276)
+|+.++|+|+||+|||||++++++.. .|.+|. + ++...... .+......+. ....... .....
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~ 102 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAI------------YEKKGIRGYFFDTKDLIFRLKHLMDEGK-DTKFLKT-VLNSP 102 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHH------------HHHSCCCCCEEEHHHHHHHHHHHHHHTC-CSHHHHH-HHTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH------------HHHcCCeEEEEEHHHHHHHHHHHhcCch-HHHHHHH-hcCCC
Confidence 58899999999999999999999854 445553 2 22211111 0000000000 0000000 11357
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+++|+|+.. +++....+.+.+.+.+..+.+ +|++||..
T Consensus 103 llilDE~~~~--~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 103 VLVLDDLGSE--RLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp EEEEETCSSS--CCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred EEEEeCCCCC--cCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 7999999852 567777778888888887665 88888853
No 104
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.58 E-value=5.6e-08 Score=82.73 Aligned_cols=114 Identities=10% Similarity=0.041 Sum_probs=65.7
Q ss_pred chHHHHh-hc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc--ccc---ccCCCC-
Q 023887 149 GLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE--VST---KSGRGK- 220 (276)
Q Consensus 149 ~l~~l~~-~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~--vs~---~~g~gk- 220 (276)
.++++.. -+ +|+.++|+|+||+|||||++.|++.. .+..|.+.+.+.+... +.. ..+...
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 78 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG------------LRDGDPCIYVTTEESRDSIIRQAKQFNWDFE 78 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH------------HHHTCCEEEEESSSCHHHHHHHHHHTTCCCG
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH------------HHCCCeEEEEEcccCHHHHHHHHHHhcchHH
Confidence 3455443 23 78999999999999999999999743 4555665544322110 000 000000
Q ss_pred -ceeeeEEE-----------------------------E-ecCCC--cEEEecCCCCCCCCChhhHHHHHHHHHHHhh-c
Q 023887 221 -HTTRHVSL-----------------------------L-PLSGG--GYLADTPGFNQPSLLKVTKQSLAQTFPEVCA-V 266 (276)
Q Consensus 221 -~tt~~~~~-----------------------------~-~~~~~--~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~-~ 266 (276)
........ + ...+. .+++|+|.... ..+.....++.+.+.++.+ .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~-~~d~~~~~~~~~~l~~~~~~~ 157 (235)
T 2w0m_A 79 EYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF-LDKPAMARKISYYLKRVLNKW 157 (235)
T ss_dssp GGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS-SSCGGGHHHHHHHHHHHHHHT
T ss_pred HHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh-cCCHHHHHHHHHHHHHHHHhC
Confidence 00000000 0 01346 89999999621 2366667778888888864 4
Q ss_pred c--eEEEeeeC
Q 023887 267 G--LLYMIHML 275 (276)
Q Consensus 267 ~--ii~~~H~~ 275 (276)
+ +++++|+.
T Consensus 158 ~~~vi~~~h~~ 168 (235)
T 2w0m_A 158 NFTIYATSQYA 168 (235)
T ss_dssp TEEEEEEEC--
T ss_pred CCeEEEEeccC
Confidence 5 89999986
No 105
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.58 E-value=2.4e-07 Score=76.32 Aligned_cols=26 Identities=42% Similarity=0.567 Sum_probs=22.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.+++|+|+||||||||+|.|.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36789999999999999999999853
No 106
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=98.56 E-value=8.1e-08 Score=69.31 Aligned_cols=59 Identities=24% Similarity=0.261 Sum_probs=46.8
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEe
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (276)
|.+.|.++-++.| .|..+ +|..+.|.++|+|+++...+.|||+|.++..+.+..+|.|+
T Consensus 8 ~~G~Vi~~lg~~~y~V~~~-~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~ 67 (71)
T 1ah9_A 8 MQGTVLETLPNTMFRVELE-NGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIV 67 (71)
T ss_dssp CCEEEEEECSSSEEEEEET-TSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEEC
T ss_pred EEEEEEEEeCCcEEEEEEC-CCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEE
Confidence 6789999955366 77544 57899999999999888899999999998754345567665
No 107
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.56 E-value=4.8e-08 Score=90.13 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=37.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+|++++|+|+||||||||++.|+| ++.|.+|+|.+.+.++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag------------~l~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN------------WLKNHGFSVVIAASDTFR 169 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH------------HHHHTTCCEEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH------------HHHhcCCEEEEEeecccc
Confidence 689999999999999999999999 458999999999887754
No 108
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.56 E-value=1.1e-07 Score=85.36 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=31.9
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++++..+ +|+.++|+|+||+|||||++.|++..
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4688888766 89999999999999999999999854
No 109
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.52 E-value=2e-08 Score=104.01 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=62.9
Q ss_pred HHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccC--CCCce-----
Q 023887 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSG--RGKHT----- 222 (276)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g--~gk~t----- 222 (276)
+++++.+ +|++++|+||||+||||||+++.+.... .....+.+.....+.+...-...+..... .+..+
T Consensus 664 ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~---aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em 740 (918)
T 3thx_B 664 NNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM---AQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEEL 740 (918)
T ss_dssp EEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH---HHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHH
T ss_pred ccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH---hhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHH
Confidence 3444444 5899999999999999999998642100 00000111111111111100000000000 00000
Q ss_pred eeeEEEE--ecCCCcEEEecCCCCCCCCChhhHHHHH-HHHHHHhh-cc--eEEEeeeC
Q 023887 223 TRHVSLL--PLSGGGYLADTPGFNQPSLLKVTKQSLA-QTFPEVCA-VG--LLYMIHML 275 (276)
Q Consensus 223 t~~~~~~--~~~~~~~iiDtPg~~~~~l~~~~~~~l~-~~f~ei~~-~~--ii~~~H~~ 275 (276)
.....+. ...+..+|+|||+. ++|..+...+. ..+..+.+ .| ++++||++
T Consensus 741 ~~~~~il~~a~~p~LlLLDEP~~---GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~ 796 (918)
T 3thx_B 741 TDTAEIIRKATSQSLVILDELGR---GTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP 796 (918)
T ss_dssp HHHHHHHHHCCTTCEEEEESTTT---TSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHHHHhccCCCEEEEeCCCC---CCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH
Confidence 0000000 12356799999999 99998888876 67777765 45 99999986
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.51 E-value=4.1e-08 Score=91.60 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=56.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc-ccceeeccccccccccccCCCCceeeeEE---------
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI-LGSKWFEDQRVGEVSTKSGRGKHTTRHVS--------- 227 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~-~G~i~~~g~~~~~vs~~~g~gk~tt~~~~--------- 227 (276)
++..++|+|+||||||||+++|+|.. .|+ .|.|...+.++..... ... ..-.+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~------------~~~~~~~i~t~ed~~e~~~~-~~~--~~v~q~~~~~~~~~~~ 186 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL------------NNTKYHHILTIEDPIEFVHE-SKK--CLVNQREVHRDTLGFS 186 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH------------HHHCCCEEEEEESSCCSCCC-CSS--SEEEEEEBTTTBSCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc------------cCCCCcEEEEccCcHHhhhh-ccc--cceeeeeeccccCCHH
Confidence 67799999999999999999999954 666 4565544333221110 000 0000110
Q ss_pred -----EEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeCC
Q 023887 228 -----LLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHMLH 276 (276)
Q Consensus 228 -----~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~~ 276 (276)
.+.+++..+++|||. +.. ..+.+.+....| +++++|+.+
T Consensus 187 ~~La~aL~~~PdvillDEp~------d~e----~~~~~~~~~~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 187 EALRSALREDPDIILVGEMR------DLE----TIRLALTAAETGHLVFGTLHTTS 232 (356)
T ss_dssp HHHHHHTTSCCSEEEESCCC------SHH----HHHHHHHHHHTTCEEEEEESCSS
T ss_pred HHHHHHhhhCcCEEecCCCC------CHH----HHHHHHHHHhcCCEEEEEEccCh
Confidence 112345669999997 222 233444445556 899999864
No 111
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.49 E-value=2.2e-08 Score=103.93 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=35.6
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||+. ++|..+.+.+.+.+.++.+.| +|++|||+
T Consensus 886 ~lLILDEPTs---GLD~~~~~~l~~lL~~L~~~G~TVIvisHdl 926 (993)
T 2ygr_A 886 TVYILDEPTT---GLHFDDIRKLLNVINGLVDKGNTVIVIEHNL 926 (993)
T ss_dssp EEEEEESTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 4589999999 999999999999999998776 99999986
No 112
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.47 E-value=6.5e-08 Score=90.13 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=40.7
Q ss_pred HHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc
Q 023887 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (276)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (276)
+.+++.+ +|+.++|+|+||+|||||+|+|++. ++|++|.|.+++.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~------------~~~~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQE------------IPFDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT------------SCTTSCEEEEESS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc------------CCCCceEEEECCc
Confidence 7788777 8999999999999999999999995 4899999999875
No 113
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.47 E-value=4.9e-07 Score=82.13 Aligned_cols=24 Identities=42% Similarity=0.541 Sum_probs=21.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..++|+|.||||||||+|.|.|..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 369999999999999999999854
No 114
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=98.46 E-value=1.5e-07 Score=69.19 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=48.3
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEe
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (276)
|.+.|.+.-|+.| .|.-+ +|..+.|+++|++++++..+.+||+|.++..+.+..+|-|.
T Consensus 16 ~~G~Vik~l~n~~f~V~l~-nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi 75 (79)
T 3i4o_A 16 VEGRVVEPLPNAMFRIELE-NGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIV 75 (79)
T ss_dssp EEEEEEEEETTTEEEEEET-TSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEcCCCEEEEEeC-CCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEE
Confidence 6789999976777 77655 78899999999999988999999999999876555556553
No 115
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.46 E-value=1.8e-08 Score=104.23 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=35.6
Q ss_pred CcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 234 GGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 234 ~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
..+|+|||+. ++|..+...+.+.+.++.+.| +|++|||+
T Consensus 868 ~lLILDEPTs---GLD~~~~~~l~~lL~~L~~~G~TVIvisHdl 908 (972)
T 2r6f_A 868 TLYILDEPTT---GLHVDDIARLLDVLHRLVDNGDTVLVIEHNL 908 (972)
T ss_dssp EEEEEECTTT---TCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 4589999999 999999999999999998876 99999986
No 116
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.46 E-value=4.6e-08 Score=88.95 Aligned_cols=77 Identities=23% Similarity=0.207 Sum_probs=29.5
Q ss_pred EecCCccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCc
Q 023887 142 CSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKH 221 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~ 221 (276)
.+|+....++++++. ++|+|+||||||||||+|.|.. ..|++| +.++|.++.... .
T Consensus 6 ~~~~~~~~l~~~~~~-----I~lvG~nG~GKSTLl~~L~g~~-----------~~~~~g-i~~~g~~~~~t~---~---- 61 (301)
T 2qnr_A 6 NQVHRKSVKKGFEFT-----LMVVGESGLGKSTLINSLFLTD-----------LYPERV-ISGAAEKIERTV---Q---- 61 (301)
T ss_dssp ------------CEE-----EEEEEETTSSHHHHHHHHHC----------------------------------------
T ss_pred ceECCEEEEcCCCEE-----EEEECCCCCCHHHHHHHHhCCC-----------ccCCCC-cccCCcccCCcc---e----
Confidence 344444455555543 5999999999999999999962 167778 776665543210 0
Q ss_pred eeeeEEEEecC----CCcEEEecCCC
Q 023887 222 TTRHVSLLPLS----GGGYLADTPGF 243 (276)
Q Consensus 222 tt~~~~~~~~~----~~~~iiDtPg~ 243 (276)
....++..+. ....+.||||+
T Consensus 62 -~~~~~~~~q~~~~~~~ltv~Dt~g~ 86 (301)
T 2qnr_A 62 -IEASTVEIEERGVKLRLTVVDTPGY 86 (301)
T ss_dssp ----CEEEEC---CCEEEEEEEEC--
T ss_pred -EeeEEEEecCCCcccCcchhhhhhh
Confidence 1123333332 24579999998
No 117
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.45 E-value=5.9e-07 Score=83.11 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=26.1
Q ss_pred cchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++++..++ .++|+|.+|||||||+|+|.|..
T Consensus 25 ~~l~~i~~~lp--~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 25 SALPTLWDSLP--AIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CCC----CCCC--EEEEECBTTSSHHHHHHHHHTSC
T ss_pred cccccccccCC--EEEEECCCCCcHHHHHHHHhCCC
Confidence 35677776666 89999999999999999999954
No 118
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=98.43 E-value=7.2e-08 Score=69.60 Aligned_cols=59 Identities=29% Similarity=0.376 Sum_probs=46.7
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEe
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIE 60 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~ 60 (276)
|.+.|.++-++.| .|..+ +|..+.|.++|+|++++..+.|||+|.++..+.+..+|.|+
T Consensus 9 ~~G~Vi~~lg~~~y~V~~~-~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I~ 68 (71)
T 1hr0_W 9 TEGVVTEALPNATFRVKLD-SGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIV 68 (71)
T ss_dssp CEEECCCCCTTTBCCCEES-SSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEEC
T ss_pred EEEEEEEEeCCcEEEEEEC-CCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEEE
Confidence 6789999956255 77544 57889999999999888999999999999764445566664
No 119
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.43 E-value=4.6e-07 Score=78.62 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|++|||||||+|+|+|..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999965
No 120
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.43 E-value=1.7e-07 Score=95.96 Aligned_cols=107 Identities=19% Similarity=0.116 Sum_probs=58.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccc-cceeeccccccccccccCCCCceeeeEEE--------
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL-GSKWFEDQRVGEVSTKSGRGKHTTRHVSL-------- 228 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~-G~i~~~g~~~~~vs~~~g~gk~tt~~~~~-------- 228 (276)
+|++++|+||||+||||||+++.|.... .... .+-|.. ..+.+..+-...+ +.........+.
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~~~---~q~G-~~vpa~~~~i~~~~~i~~~~----~~~d~l~~~~stf~~e~~~~ 677 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIALM---AYIG-SYVPAQKVEIGPIDRIFTRV----GAADDLASGRSTFMVEMTET 677 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH---HTTT-CCBSSSEEEECCCCEEEEEE----C-----------CHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHH---HhcC-cccchhcccceeHHHHHhhC----CHHHHHHhhhhhhhHHHHHH
Confidence 5889999999999999999999874210 0000 011111 1111110100000 000000000000
Q ss_pred ---E--ecCCCcEEEecCCCCCCCCChhhHHHH-HHHHHHHhhc-c--eEEEeeeC
Q 023887 229 ---L--PLSGGGYLADTPGFNQPSLLKVTKQSL-AQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 229 ---~--~~~~~~~iiDtPg~~~~~l~~~~~~~l-~~~f~ei~~~-~--ii~~~H~~ 275 (276)
+ ...+..+|+||||. +++..+...+ .+.+..+.+. + ++++||+.
T Consensus 678 ~~il~~a~~psLlLLDEp~~---Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~ 730 (800)
T 1wb9_A 678 ANILHNATEYSLVLMDEIGR---GTSTYDGLSLAWACAENLANKIKALTLFATHYF 730 (800)
T ss_dssp HHHHHHCCTTEEEEEESCCC---CSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHhccCCCEEEEECCCC---CCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH
Confidence 0 11345689999999 8887776665 6788888773 5 99999986
No 121
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.42 E-value=3.4e-08 Score=95.65 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=45.4
Q ss_pred cchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccc
Q 023887 148 LGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVS 213 (276)
Q Consensus 148 ~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs 213 (276)
..++++++.++.++++|+|+||||||||+++|+|.. +|++|+|.++|.++...+
T Consensus 18 ~~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~------------~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 18 NGFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTAL------------IPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TTEEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHH------------CCCTTTCCCCCTTSCSCC
T ss_pred ccccceEEEEccceEEEECCCCCcHHHHHHHHhcCC------------CCCCCEEEECCEEcccCc
Confidence 456677777733999999999999999999999955 899999999998876543
No 122
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=98.38 E-value=2.4e-07 Score=73.19 Aligned_cols=65 Identities=26% Similarity=0.254 Sum_probs=53.9
Q ss_pred CeeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeeccccc
Q 023887 1 MRVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQRST 67 (276)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R~~ 67 (276)
|.+.|.++-++.| .|..+ +|..+.|.++|+|++ ...+.+||+|.+++.+++...|.|+.+++|..
T Consensus 34 ~~G~Vi~~lgn~~y~V~~~-dG~~~l~~i~GK~Rk-~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r~~ 99 (117)
T 2oqk_A 34 EYGQVQRMLGNGRLDAYCF-DGQKRLCHIRGKMRK-KVWVNPGDIVLVSLRDFQDSKGDIILKYTPDE 99 (117)
T ss_dssp EEEEEEEEEETTEEEEEET-TSCEEEEECCHHHHH-HSCCCTTCEEEEEECTTCTTEEEEEEECCHHH
T ss_pred EEEEEEEEcCCCEEEEEeC-CCCEEEEEEcCceec-CCcCCCCCEEEEEEEcCCCCeEEEEEEechHH
Confidence 5688999955366 77444 688999999999998 88899999999998755567899999999864
No 123
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.38 E-value=1e-07 Score=99.90 Aligned_cols=117 Identities=14% Similarity=0.098 Sum_probs=64.7
Q ss_pred ccchHHHHhhc-c-------CCEEEEEecCCCChhHHHHHHcCCCCCCccccccC-ccccccc-ceeecccccccccccc
Q 023887 147 KLGLDSLLQRL-R-------DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDN-WFEPILG-SKWFEDQRVGEVSTKS 216 (276)
Q Consensus 147 ~~~l~~l~~~l-~-------g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~-~~~p~~G-~i~~~g~~~~~vs~~~ 216 (276)
...++++++.+ + |++++|+||||+||||||+++ |.... -++. .|-|.+. .+.+...-.. ..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----~aqiG~~Vpq~~~~l~v~d~I~~----ri 839 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----MAQMGCYVPAEVCRLTPIDRVFT----RL 839 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH----HHTTTCCEESSEEEECCCSBEEE----EC
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH----HhheeEEeccCcCCCCHHHHHHH----Hc
Confidence 34556666555 3 799999999999999999999 75310 0000 0122210 1111000000 00
Q ss_pred CCCCceeee-------------EEEEecCCCcEEEecCCCCCCCCChhhH-HHHHHHHHHHhhc-c--eEEEeeeC
Q 023887 217 GRGKHTTRH-------------VSLLPLSGGGYLADTPGFNQPSLLKVTK-QSLAQTFPEVCAV-G--LLYMIHML 275 (276)
Q Consensus 217 g~gk~tt~~-------------~~~~~~~~~~~iiDtPg~~~~~l~~~~~-~~l~~~f~ei~~~-~--ii~~~H~~ 275 (276)
|........ +......+..+|+||||- +++..+. ..+.+.+..+.+. + +|++||++
T Consensus 840 g~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~---Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~ 912 (1022)
T 2o8b_B 840 GASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGR---GTATFDGTAIANAVVKELAETIKCRTLFSTHYH 912 (1022)
T ss_dssp C---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTT---TSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH
T ss_pred CCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCC---CCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 100000000 000112346699999999 9988764 4467888888865 5 99999985
No 124
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.37 E-value=1.1e-07 Score=88.48 Aligned_cols=58 Identities=22% Similarity=0.138 Sum_probs=46.8
Q ss_pred EEecC-CccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 141 FCSVE-SKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 141 ~~s~~-~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
...|. ....++.+ +.+ +|++++|+|+||+|||||+++|+|.. .|+.|.+.+.|++..+
T Consensus 52 ~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~------------~~~~g~i~~~G~~~~e 111 (347)
T 2obl_A 52 DQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA------------SADIIVLALIGERGRE 111 (347)
T ss_dssp CSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS------------CCSEEEEEEESCCHHH
T ss_pred ceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC------------CCCEEEEEEecccHHH
Confidence 33444 34578888 666 89999999999999999999999965 8899999888876433
No 125
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.37 E-value=6.2e-07 Score=78.84 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++|+|.+|||||||+|.|+|..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4579999999999999999999854
No 126
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.36 E-value=7.2e-08 Score=93.53 Aligned_cols=41 Identities=27% Similarity=0.290 Sum_probs=36.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
+|.+++|+|+||||||||++.|+|. +.|.+|+|.+.+.++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl------------l~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ------------FEQQGKSVMLAAGDTF 332 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH------------HHHTTCCEEEECCCTT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH------------hhhcCCeEEEecCccc
Confidence 5789999999999999999999994 4899999999876654
No 127
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.36 E-value=4.6e-07 Score=85.10 Aligned_cols=75 Identities=21% Similarity=0.199 Sum_probs=46.1
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceee--eEEEEecCC-CcEE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTR--HVSLLPLSG-GGYL 237 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~--~~~~~~~~~-~~~i 237 (276)
.++|||.||||||||+|+|.+.. ..++..++ ||+ ..+.+...+ ...+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~--------------------------~~v~~~pf----tT~~~~~g~~~~~~~~i~l 123 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE--------------------------SEAAEYEF----TTLVTVPGVIRYKGAKIQM 123 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC--------------------------CCGGGTCS----SCCCEEEEEEEETTEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCC--------------------------CcccCCCC----ceeeeeeEEEEeCCcEEEE
Confidence 79999999999999999999853 12233333 442 334455443 4579
Q ss_pred EecCCCCCCCCChhhHHHHHHHHHHHhhcc
Q 023887 238 ADTPGFNQPSLLKVTKQSLAQTFPEVCAVG 267 (276)
Q Consensus 238 iDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ 267 (276)
+||||+...... ....-.+.+..++...
T Consensus 124 ~D~pGl~~~a~~--~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 124 LDLPGIIDGAKD--GRGRGKQVIAVARTCN 151 (376)
T ss_dssp EECGGGCCC-------CHHHHHHHHHHHCS
T ss_pred EeCCCccCCchh--hhHHHHHHHHHHHhcC
Confidence 999999543221 2223345566666655
No 128
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.36 E-value=2.8e-07 Score=83.56 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+...++|+|+||||||||+|+|+|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45589999999999999999999854
No 129
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.35 E-value=9e-07 Score=78.76 Aligned_cols=23 Identities=52% Similarity=0.752 Sum_probs=21.2
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|.+|+|||||+|.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 130
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.33 E-value=2e-07 Score=86.94 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=36.6
Q ss_pred CCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 232 SGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 232 ~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
.+..+|+|||.. +||....+.+.+.+.++.+.| ++++||++
T Consensus 303 ~p~~lllDEpt~---~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~ 345 (365)
T 3qf7_A 303 RLDAFFIDEGFS---SLDTENKEKIASVLKELERLNKVIVFITHDR 345 (365)
T ss_dssp TCCEEEEESCCT---TSCHHHHHHHHHHHHGGGGSSSEEEEEESCH
T ss_pred CCCEEEEeCCCc---cCCHHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 445699999999 999999999999999998776 99999986
No 131
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.32 E-value=2.4e-07 Score=76.45 Aligned_cols=106 Identities=17% Similarity=0.143 Sum_probs=61.3
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..|. +...+..++..... .++|+++|+||+|+.+.+. .+.........++.++.+
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTRRD-TFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEA 157 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEe
Confidence 34445688999999999997652 22234444444433 4678999999999954321 122334445667888999
Q ss_pred ecCCccchHHHHhhc-----cCCEEEEEecCCCChhH
Q 023887 143 SVESKLGLDSLLQRL-----RDQTTVIVGPSGVGKSS 174 (276)
Q Consensus 143 s~~~~~~l~~l~~~l-----~g~~v~lvG~sGvGKST 174 (276)
|+.++.+++.+...+ +.....--+.+++||||
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~n~gkSs 194 (195)
T 1x3s_A 158 SAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPSS 194 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHTSGGGTCC---------
T ss_pred cCCCCCCHHHHHHHHHHHHHhhhhhhcccccCCCCCC
Confidence 999998887776653 11111122556999997
No 132
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.32 E-value=7.9e-08 Score=87.92 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=36.1
Q ss_pred eEEEecCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 139 PLFCSVESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.+.++|. ...++++++.+ +|++++|+|+||+|||||+++|+|.
T Consensus 106 ~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 106 NIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3444454 45789999988 8999999999999999999999983
No 133
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.32 E-value=2.1e-06 Score=69.73 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++++|++|||||||+|.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
No 134
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.31 E-value=3.7e-07 Score=86.22 Aligned_cols=54 Identities=26% Similarity=0.222 Sum_probs=40.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+|.+++|+|+||||||||+|+|.|.....+..+..+..+|+.|.+.+.+.++..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~ 72 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDW 72 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhh
Confidence 688999999999999999999999542122333444568899999888765443
No 135
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.30 E-value=2e-06 Score=76.23 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++|+|++|||||||+|.|.|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999954
No 136
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.29 E-value=1.7e-07 Score=89.26 Aligned_cols=44 Identities=34% Similarity=0.372 Sum_probs=30.7
Q ss_pred cCceeEEEecCCccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 135 WGYEPLFCSVESKLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++..+..+|.....++++++. ++|+|+||||||||||+|+|..
T Consensus 12 l~~~~l~~~y~~~~vl~~vsf~-----I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 12 VGFANLPNQVYRKSVKRGFEFT-----LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp ---CCCCCCTTTTTCC-CCCEE-----EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEecceeECCEEEecCCCEE-----EEEECCCCCcHHHHHHHHhCCC
Confidence 3445555666655555555543 5999999999999999999975
No 137
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.28 E-value=4.2e-07 Score=75.66 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=23.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|++++|+|+||||||||+++|++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999999984
No 138
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.28 E-value=2.4e-06 Score=75.73 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++|+|.+|||||||+|.|.|..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999853
No 139
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.25 E-value=1.2e-06 Score=86.73 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++|+|++|||||||||.|.|..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3578999999999999999999954
No 140
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.25 E-value=2.4e-07 Score=75.81 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=62.6
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHH----HHHHhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFL----VEAESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l----~~a~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
+.+....++|.+++|+++..+. +...+..++ ......++|+++|.||+|+.++. ..+........++.+.+.+
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3t5g_A 70 FPQTYSIDINGYILVYSVTSIK-SFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLES 148 (181)
T ss_dssp CCGGGTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEE
Confidence 3445677999999999997653 222233332 22223578999999999996431 1122334455678889999
Q ss_pred ecCCccchHHHHhhccCCEEEEEecCCCChhH
Q 023887 143 SVESKLGLDSLLQRLRDQTTVIVGPSGVGKSS 174 (276)
Q Consensus 143 s~~~~~~l~~l~~~l~g~~v~lvG~sGvGKST 174 (276)
|+.++.+++++...+.......-|+.++||||
T Consensus 149 Sa~~~~~v~~l~~~l~~~~~~~~~~~~~gkss 180 (181)
T 3t5g_A 149 SAKENQTAVDVFRRIILEAEKMDGACSQGKSS 180 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTC-----CCBSC
T ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCcccCcCC
Confidence 99999988887776522112223788999986
No 141
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.24 E-value=2.8e-07 Score=83.94 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=37.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+|++++|+|+||||||||++.|+|. +.|++|+|.+.+.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~------------l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR------------LKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH------------HHHTTCCEEEECCCCSC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH------------HHHcCCeEEEEeecccc
Confidence 6899999999999999999999994 48999999999877643
No 142
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.23 E-value=1.7e-06 Score=82.71 Aligned_cols=57 Identities=28% Similarity=0.357 Sum_probs=33.7
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecC---CCc
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS---GGG 235 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~---~~~ 235 (276)
-.+++|+|.+|||||||+|.|.|.. ...+...+| +|+...+.... ...
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~-------------------------~~~v~~~~g----~t~~~~~~~~~~~~~~~ 73 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGER-------------------------ISIVEDTPG----VTRDRIYSSAEWLNYDF 73 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEE-------------------------EC---------------CEEEECTTCSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC-------------------------CcccCCCCC----cceeEEEEEEEECCceE
Confidence 4589999999999999999999843 222333334 55444444433 256
Q ss_pred EEEecCCCC
Q 023887 236 YLADTPGFN 244 (276)
Q Consensus 236 ~iiDtPg~~ 244 (276)
.++||||+.
T Consensus 74 ~liDT~G~~ 82 (456)
T 4dcu_A 74 NLIDTGGID 82 (456)
T ss_dssp EEECCCC--
T ss_pred EEEECCCCC
Confidence 899999984
No 143
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.23 E-value=8.5e-07 Score=82.25 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=33.4
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccc----cc-eeeccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL----GS-KWFEDQRV 209 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~----G~-i~~~g~~~ 209 (276)
+|++++|+|+||+|||||++.|++.. ..+|++ |. +++++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~----------~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV----------QLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT----------TSCGGGTSCSCEEEEEESSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh----------ccchhcCCCCCeEEEEeCCCC
Confidence 79999999999999999999999854 114565 56 78777543
No 144
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=1.2e-06 Score=79.83 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=56.0
Q ss_pred EEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc------------------cccc-cCCCC--
Q 023887 162 TVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE------------------VSTK-SGRGK-- 220 (276)
Q Consensus 162 v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~------------------vs~~-~g~gk-- 220 (276)
+.|.|+||+|||||+++|++.. +.|..|.+.+++..... +... .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l-----------~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI-----------FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRI 107 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH-----------SCTTCCC------------------CCEECSSEEEECCC----CCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-----------cCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchH
Confidence 8999999999999999999832 26666776655533220 0000 00000
Q ss_pred ---c------eeeeE------EEEecCCCcEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeCC
Q 023887 221 ---H------TTRHV------SLLPLSGGGYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHMLH 276 (276)
Q Consensus 221 ---~------tt~~~------~~~~~~~~~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~~ 276 (276)
. .+... +-+...+..+++|+|.. ++......+.+.+.+..+.. +|+++|+.+
T Consensus 108 ~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~----L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 108 VIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS----LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp HHHHHHHHHTTTTC------------CCEEEEEECTTS----SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred HHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc----cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 0 00000 00011345789999987 77777778888888865543 899999753
No 145
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.23 E-value=3.5e-07 Score=77.76 Aligned_cols=25 Identities=40% Similarity=0.668 Sum_probs=21.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|+.++|+||||||||||+|+|.|.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999999984
No 146
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.22 E-value=9.9e-07 Score=77.97 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=21.9
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|||||||+|.|.+..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999854
No 147
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=98.22 E-value=1.6e-06 Score=79.59 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=71.2
Q ss_pred hccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccchHHH
Q 023887 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLDSL 153 (276)
Q Consensus 74 ~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~l 153 (276)
.+|+|..++ .++. +.++...+++++ ....|.+|++|.|..+++..+ ..++.+++++..+......+..|
T Consensus 53 ~Gn~E~~yL-~~L~-~e~~~~rler~l-----~~~~P~IIltrg~~~peelie----~A~~~~IPVL~T~~~ts~~~~~l 121 (314)
T 1ko7_A 53 LGTTELSFY-NLLP-DEERKGRMRKLC-----RPETPAIIVTRDLEPPEELIE----AAKEHETPLITSKIATTQLMSRL 121 (314)
T ss_dssp ECHHHHHHH-HHSC-HHHHTTHHHHHC-----CTTCCCEEECTTCCCCHHHHH----HHHHTTCCEEECCSCHHHHHHHH
T ss_pred EechhHHHH-HhcC-HHHHHHHHHHHh-----cCCCCEEEEeCCCCCCHHHHH----HHHHCCCeEEEECCchhHHHHHH
Confidence 455565544 3333 233444677776 367788899999998775443 34456889998888888888877
Q ss_pred Hhhc-c----------------CCEEEEEecCCCChhHHHHHHcCC
Q 023887 154 LQRL-R----------------DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 154 ~~~l-~----------------g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..++ + |+.++|+|+||+|||||.+.|...
T Consensus 122 ~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 122 TTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp HHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred HHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 7665 2 788999999999999999999863
No 148
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.22 E-value=3.5e-06 Score=69.09 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=20.8
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|.+|||||||+|.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999999843
No 149
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.21 E-value=1.7e-06 Score=74.25 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=35.9
Q ss_pred chHHHHhhc-----cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc-----cccceeecccc
Q 023887 149 GLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP-----ILGSKWFEDQR 208 (276)
Q Consensus 149 ~l~~l~~~l-----~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p-----~~G~i~~~g~~ 208 (276)
++..|...+ +|+.++|+|+||+|||||++.|++.. ..+| ..|.+++++..
T Consensus 9 G~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~----------~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 9 GSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC----------QLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT----------TSCGGGTCCSSEEEEEESSS
T ss_pred CChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH----------hCchhcCCCCCeEEEEECCC
Confidence 344444443 78999999999999999999999842 1133 45677777654
No 150
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.21 E-value=6.8e-06 Score=67.47 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.2
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.+++|+|++|||||||+|.|.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999984
No 151
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.21 E-value=5.4e-06 Score=73.96 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
No 152
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.20 E-value=5e-07 Score=92.00 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=23.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
|++++|+||||+||||||+++.|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 9999999999999999999999843
No 153
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.19 E-value=1.5e-06 Score=82.76 Aligned_cols=23 Identities=48% Similarity=0.654 Sum_probs=20.2
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|.||||||||+|.|.+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 154
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.18 E-value=2.7e-06 Score=80.82 Aligned_cols=56 Identities=29% Similarity=0.360 Sum_probs=29.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecC---CCcE
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLS---GGGY 236 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~---~~~~ 236 (276)
-+++|+|.+|||||||+|.|.|.. ...++..+| +|+...+.... ....
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~-------------------------~~~v~~~~g----~T~d~~~~~~~~~~~~~~ 54 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGER-------------------------ISIVEDTPG----VTRDRIYSSAEWLNYDFN 54 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEE-------------------------CC---------------CEEEECTTCSSCCE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-------------------------ceeecCCCC----CccceEEEEEEECCceEE
Confidence 369999999999999999999843 122233334 55544444433 2468
Q ss_pred EEecCCCC
Q 023887 237 LADTPGFN 244 (276)
Q Consensus 237 iiDtPg~~ 244 (276)
++||||..
T Consensus 55 l~DT~G~~ 62 (436)
T 2hjg_A 55 LIDTGGID 62 (436)
T ss_dssp EEC-----
T ss_pred EEECCCCC
Confidence 99999983
No 155
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.16 E-value=7.2e-07 Score=82.66 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=29.9
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccc
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (276)
+.+++|+|+||||||||+|.|.+.. .+..|++.+.+.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~------------~~~~~~v~V~~~d 111 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML------------TERGHKLSVLAVD 111 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH------------HHTTCCEEEEECC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh------------hhcCCeEEEEeec
Confidence 6789999999999999999999843 5556666555443
No 156
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.16 E-value=5.8e-06 Score=77.12 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|+||||||||+|+|.+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 49999999999999999999854
No 157
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.15 E-value=1.6e-06 Score=76.86 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|+|||||+|.|.+..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999854
No 158
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.15 E-value=5.8e-06 Score=73.24 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++|+|.+|||||||+|.|.|..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999854
No 159
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.14 E-value=5.9e-06 Score=73.96 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++|+|.||||||||+|.|.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999853
No 160
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.13 E-value=5.9e-06 Score=72.35 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
...++|+|++|||||||+|.|++..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999999854
No 161
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.13 E-value=7.7e-07 Score=74.50 Aligned_cols=25 Identities=44% Similarity=0.675 Sum_probs=22.6
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
|++++|+||||||||||+++|++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4679999999999999999999854
No 162
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.11 E-value=9.3e-07 Score=75.28 Aligned_cols=26 Identities=38% Similarity=0.647 Sum_probs=24.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|++++|+|+||||||||+|+|+|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 79999999999999999999999865
No 163
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.11 E-value=1.4e-06 Score=84.89 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=39.4
Q ss_pred hHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccc
Q 023887 150 LDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQR 208 (276)
Q Consensus 150 l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~ 208 (276)
++.+++.+ +|+.++|+|+||||||||+|+|+|.. +|++|.|.+++..
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i------------~~~~giitied~~ 297 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI------------PPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS------------CTTCCEEEEESSC
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC------------CCCCCEEEEcCcc
Confidence 44555555 78889999999999999999999955 8999999988764
No 164
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.11 E-value=7.5e-07 Score=83.18 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=37.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
+|++++|+|+||||||||++.|+|. +.|++|+|.+.+.++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~------------l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR------------LKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH------------HHHTTCCEEEECCCCSC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh------------ccccCCEEEEecccccc
Confidence 6899999999999999999999994 48999999999877643
No 165
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.10 E-value=8.8e-07 Score=77.45 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=23.5
Q ss_pred cCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.+....++++++.+ +|.+++|+|+||||||||+++|.+.
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34456789999988 7889999999999999999999884
No 166
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.10 E-value=9.1e-06 Score=72.94 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
--.++|+|.+|||||||+|+|+|..
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999965
No 167
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.09 E-value=3.7e-06 Score=67.89 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.7
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|++|||||||+|.|.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999999854
No 168
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.09 E-value=3.5e-07 Score=89.03 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=63.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccc--eeecccccc-cccc---ccCCC--Cceee-eEEE
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGS--KWFEDQRVG-EVST---KSGRG--KHTTR-HVSL 228 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~--i~~~g~~~~-~vs~---~~g~g--k~tt~-~~~~ 228 (276)
+|++++|+|+||+|||||++.+++.. .|. |+ +++..++.. .+.. ..+.. +.... ...+
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~------------~~~-G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~ 346 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA------------CAN-KERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKI 346 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH------------HTT-TCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH------------HhC-CCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEE
Confidence 79999999999999999999999854 443 54 344333211 0000 00100 00000 0111
Q ss_pred E---------------------ecCCCcEEEecCCCCCCCCChh-----hHHHHHHHHHHHhhcc--eEEEeeeC
Q 023887 229 L---------------------PLSGGGYLADTPGFNQPSLLKV-----TKQSLAQTFPEVCAVG--LLYMIHML 275 (276)
Q Consensus 229 ~---------------------~~~~~~~iiDtPg~~~~~l~~~-----~~~~l~~~f~ei~~~~--ii~~~H~~ 275 (276)
. ...+..+++| |.. ++|.. ..+.+.+++..+++.| +++++|+.
T Consensus 347 ~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~---~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 347 VCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLS---ALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHH---HHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred EEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChH---HHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 1 1123458999 988 77766 6778888888888877 89999986
No 169
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.08 E-value=5.4e-07 Score=85.76 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=39.8
Q ss_pred chHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
.++++ ..-+|..++|+|+||+|||||+++|++.. .|.+|+|.+.+.++
T Consensus 158 ~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l------------~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 158 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQEL------------NSSERNILTVEDPI 205 (418)
T ss_dssp HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHH------------CCTTSCEEEEESSC
T ss_pred HHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhc------------CCCCCEEEEecccc
Confidence 45555 23478899999999999999999999954 78899999888766
No 170
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.07 E-value=7.9e-06 Score=70.00 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++|+|.+|||||||+|.|.+..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999843
No 171
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.07 E-value=2.9e-06 Score=80.13 Aligned_cols=78 Identities=22% Similarity=0.144 Sum_probs=41.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEE
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYL 237 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~i 237 (276)
.+.+++|+|.||||||||+|+|.+... ....+..+..+|..|.+.+.+.++..+..... .... ......+
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~-------p~~~--~~~~i~l 90 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHK-------PASK--IPAFLNV 90 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHC-------CSEE--ECCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccC-------cccc--cccccEE
Confidence 567899999999999999999998631 11111222246667777666554433221100 0000 1123578
Q ss_pred EecCCCCC
Q 023887 238 ADTPGFNQ 245 (276)
Q Consensus 238 iDtPg~~~ 245 (276)
+||||+..
T Consensus 91 vDtpGl~~ 98 (396)
T 2ohf_A 91 VDIAGLVK 98 (396)
T ss_dssp EECCC---
T ss_pred EECCCccc
Confidence 89999854
No 172
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.07 E-value=1.1e-06 Score=84.88 Aligned_cols=25 Identities=40% Similarity=0.582 Sum_probs=20.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+-.++|+|++|||||||+|.|.+..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5679999999999999999999853
No 173
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.07 E-value=1.1e-06 Score=75.89 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=20.5
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHc-CCC
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALR-SSP 183 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~-g~~ 183 (276)
....+++.+ +|++++|+|+||||||||+++|. +..
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345666666 79999999999999999999999 854
No 174
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.05 E-value=1e-06 Score=75.05 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=31.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccc---cccceeecccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEP---ILGSKWFEDQR 208 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p---~~G~i~~~g~~ 208 (276)
+|++++|+|+||||||||+++|.+.. .| ..|.|.+++..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~------------~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL------------SAQGLPAEVVPMDGFH 62 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH------------HHTTCCEEEEESGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH------------hhcCCceEEEecCCCc
Confidence 58899999999999999999999954 43 46677766644
No 175
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.05 E-value=5.4e-07 Score=75.49 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=30.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccc---ccceeecccccccc
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPI---LGSKWFEDQRVGEV 212 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~---~G~i~~~g~~~~~v 212 (276)
++++|+|+||+|||||+++|.+ +|+|. .|.|.+++.++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~------------~~~~~g~~~G~I~~dg~~i~~~ 46 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP------------ILRERGLRVAVVKRHAHGDFEI 46 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH------------HHHHTTCCEEEEEC--------
T ss_pred eEEEEECCCCCCHHHHHHHHHH------------HhhhcCCceEEEEEcCcccccC
Confidence 5799999999999999999999 55888 89999999876554
No 176
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.05 E-value=5.3e-06 Score=66.50 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|++|||||||+|.|.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999999854
No 177
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.05 E-value=5.1e-06 Score=66.43 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|++|||||||+|.|.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998743
No 178
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.04 E-value=1.4e-06 Score=79.07 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=33.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccc--ccccceee---cccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFE--PILGSKWF---EDQR 208 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~--p~~G~i~~---~g~~ 208 (276)
+|.+++|+|+||||||||+++|.+.. . |++|+|.+ ++..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l------------~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL------------SRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH------------TTSTTCCCEEEEEGGGGB
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH------------hhCCCCCeEEEEecCCcc
Confidence 57899999999999999999999954 5 78888887 6644
No 179
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.04 E-value=3.5e-06 Score=78.73 Aligned_cols=76 Identities=26% Similarity=0.226 Sum_probs=43.9
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCcEEE
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGGYLA 238 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~~ii 238 (276)
+.+++|+|.||||||||+|+|.+.. ..+..+..+...|..|.+.+.+.++..+...... .... .....++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~-------~~~~--~~~i~lv 71 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKP-------ERIL--PTTMEFV 71 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCC-------SEEE--CCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecc-------ccee--eeEEEEE
Confidence 4579999999999999999999843 1112222234466777776665543333211110 0011 1235688
Q ss_pred ecCCCC
Q 023887 239 DTPGFN 244 (276)
Q Consensus 239 DtPg~~ 244 (276)
||||..
T Consensus 72 DtpGl~ 77 (363)
T 1jal_A 72 DIAGLV 77 (363)
T ss_dssp ECCSCC
T ss_pred ECCCCc
Confidence 999984
No 180
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.02 E-value=7.8e-06 Score=66.16 Aligned_cols=24 Identities=42% Similarity=0.605 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|++|||||||+|.|.+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999854
No 181
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.01 E-value=5.9e-06 Score=65.71 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=20.9
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|++|||||||+|.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999743
No 182
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.00 E-value=6.5e-06 Score=66.67 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=21.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|++|||||||+|.|.+..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998743
No 183
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.00 E-value=9.5e-06 Score=76.69 Aligned_cols=32 Identities=31% Similarity=0.348 Sum_probs=25.8
Q ss_pred chHHHHhhc-----cCCEEEEEecCCCChhHHHHHHc
Q 023887 149 GLDSLLQRL-----RDQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 149 ~l~~l~~~l-----~g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
++..|...+ +|++++|+|+||+|||||++.|+
T Consensus 163 G~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 163 GSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 455565554 78999999999999999999553
No 184
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.00 E-value=1.2e-05 Score=67.84 Aligned_cols=33 Identities=33% Similarity=0.394 Sum_probs=26.4
Q ss_pred chHHHHh-hc-cCCEEEEEecCCCChhHHHHHHcC
Q 023887 149 GLDSLLQ-RL-RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 149 ~l~~l~~-~l-~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
.++.+.. -+ +|+.++|+|+||+|||||++.|++
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444443 23 789999999999999999999986
No 185
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.00 E-value=2.4e-06 Score=78.77 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=28.5
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..++++++.. ++.+++++|++|+|||||+|.|++.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3455666655 6789999999999999999999864
No 186
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.00 E-value=4.6e-06 Score=68.83 Aligned_cols=105 Identities=16% Similarity=0.204 Sum_probs=59.6
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEe
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (276)
+....+.++|.+++|+|+..+. +...+..++.... ..++|+++|+||+|+.+... .+........++++++.+|
T Consensus 81 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (196)
T 3tkl_A 81 ITSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETS 159 (196)
T ss_dssp THHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEEC
T ss_pred hHHHHHhhCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEe
Confidence 3344678999999999997642 2223344443333 23789999999999975421 1222334455678899999
Q ss_pred cCCccchHHHHhhc----cCCEEEEEecCCCChhH
Q 023887 144 VESKLGLDSLLQRL----RDQTTVIVGPSGVGKSS 174 (276)
Q Consensus 144 ~~~~~~l~~l~~~l----~g~~v~lvG~sGvGKST 174 (276)
+.++.+++++...+ ....----..+|++||+
T Consensus 160 a~~g~gv~~l~~~l~~~i~~~~~~~~~~~~~~~s~ 194 (196)
T 3tkl_A 160 AKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSN 194 (196)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHC-------------
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccccccCCCccCC
Confidence 99999888776654 11111122456777776
No 187
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.98 E-value=2.3e-06 Score=71.76 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=24.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|++++|+|+||||||||+++|.+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 68999999999999999999999853
No 188
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.97 E-value=2.8e-05 Score=64.16 Aligned_cols=90 Identities=9% Similarity=0.096 Sum_probs=60.6
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhc-----------CCCEEEEEeCCCCCCHHHHHHHHHHh---
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST-----------GIPLTLALNKVELVDEEVLNTWKSRL--- 132 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~-----------~~~~~ivlnK~Dl~~~~~~~~~~~~~--- 132 (276)
..+.+..+.++|.+++|+|+..+. +...+..++...... ++|+++|+||+|+.+....+.+...+
T Consensus 77 ~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 155 (199)
T 4bas_A 77 RGLWETYYDNIDAVIFVVDSSDHL-RLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLT 155 (199)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHH
T ss_pred HHHHHHHHhcCCEEEEEEECCcHH-HHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcch
Confidence 344445678999999999998653 233444444443332 88999999999998652222221211
Q ss_pred ---hhcCceeEEEecCCccchHHHHhhc
Q 023887 133 ---HTWGYEPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 133 ---~~~~~~~~~~s~~~~~~l~~l~~~l 157 (276)
...++.++.+|+.++.+++++...+
T Consensus 156 ~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (199)
T 4bas_A 156 TLMGDHPFVIFASNGLKGTGVHEGFSWL 183 (199)
T ss_dssp HHHTTSCEEEEECBTTTTBTHHHHHHHH
T ss_pred hhccCCeeEEEEeeCCCccCHHHHHHHH
Confidence 3456788999999999988877654
No 189
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.97 E-value=1.3e-06 Score=84.57 Aligned_cols=25 Identities=44% Similarity=0.593 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+-.++|+|.+|||||||+|.|.+..
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~ 267 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNED 267 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHT
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCC
Confidence 4689999999999999999999843
No 190
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.97 E-value=4.2e-05 Score=67.86 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.7
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-.++|+|.+|||||||+|+|.|..
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 4589999999999999999999965
No 191
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.96 E-value=8e-06 Score=65.42 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.9
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|||||||+|.+.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEEECCCCCCHHHHHHHHcCcc
Confidence 368999999999999999999754
No 192
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.96 E-value=7.7e-06 Score=65.40 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.8
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|++|||||||+|.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998743
No 193
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.96 E-value=2.8e-06 Score=70.74 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=24.3
Q ss_pred ccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 157 LRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 157 l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++|+.++|+|+||||||||+|+|.+..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999999854
No 194
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.95 E-value=1.9e-06 Score=75.15 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=30.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHc---CCCCCCccccccCcccccccceeecc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALR---SSPHASDAADVDNWFEPILGSKWFED 206 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~---g~~~~~~~~~~~~~~~p~~G~i~~~g 206 (276)
++++++|+|+||||||||+++|+ |.. .|+.|++.+++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~------------~~~~G~i~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ------------HLSSGHFLREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC------------CEEHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe------------EecHHHHHHHH
Confidence 56899999999999999999999 865 56667665543
No 195
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.95 E-value=9.8e-06 Score=64.77 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.|.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999974
No 196
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.95 E-value=9.2e-06 Score=64.60 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|++|||||||+|.+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998643
No 197
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.95 E-value=4e-05 Score=62.79 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=60.5
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHHHHHHHHHh-----hhcCc
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGY 137 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~ 137 (276)
..+.+..+.++|.+++|+|+..+. +...+.+++.... ..++|+++|+||+|+.+....+.+...+ ...++
T Consensus 79 ~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 157 (181)
T 2h17_A 79 RSSWNTYYTNTEFVIVVVDSTDRE-RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQW 157 (181)
T ss_dssp TCGGGGGGTTCCEEEEEEETTCTT-THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE
T ss_pred HHHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCce
Confidence 344455788999999999998763 3444444444433 2678999999999997632222222222 23456
Q ss_pred eeEEEecCCccchHHHHhhc
Q 023887 138 EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l 157 (276)
.++.+|+.++.+++++...+
T Consensus 158 ~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 158 HIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp EEEECBTTTTBTHHHHHHHH
T ss_pred EEEEccCCCCcCHHHHHHHH
Confidence 78899999999998887654
No 198
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.94 E-value=2.7e-05 Score=70.88 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=32.6
Q ss_pred cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcc-eEEEeeeC
Q 023887 235 GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVG-LLYMIHML 275 (276)
Q Consensus 235 ~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~-ii~~~H~~ 275 (276)
.+|+|+|.. +||....+.+.+.+.++.+.. +|++||+.
T Consensus 244 ~lllDEp~~---~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~ 282 (322)
T 1e69_A 244 FYVLDEVDS---PLDDYNAERFKRLLKENSKHTQFIVITHNK 282 (322)
T ss_dssp EEEEESCCS---SCCHHHHHHHHHHHHHHTTTSEEEEECCCT
T ss_pred EEEEeCCCC---CCCHHHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 489999999 999999999999999985422 99999985
No 199
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.94 E-value=1e-05 Score=67.12 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++|+|.+|||||||+|.|.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998743
No 200
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.94 E-value=7.4e-06 Score=68.76 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=28.0
Q ss_pred chHHHHhhccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++.+++..+...++++|++|||||||+|.+.+..
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~ 49 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDR 49 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45666655666689999999999999999999743
No 201
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.94 E-value=4e-06 Score=70.00 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=21.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|+||||||||+|.|.+..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 378999999999999999999865
No 202
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.93 E-value=8.9e-06 Score=65.14 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|.+|||||||+|.|.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999999843
No 203
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.93 E-value=4.5e-05 Score=70.28 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
--.++|+|.+|||||||+|+|.|..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999999964
No 204
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.93 E-value=8.7e-06 Score=65.21 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.8
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|++|||||||+|.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999999743
No 205
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.93 E-value=1e-05 Score=65.35 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|.+|||||||+|.|.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999999743
No 206
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.92 E-value=7e-07 Score=78.25 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=28.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
.+++|+||||||||||+++|+|.. .|++|.|.++|.++.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~------------~~~~G~i~~~g~~~~ 66 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTAL------------IPDLTLLHFRNTTEA 66 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH------------SCCTTTC--------
T ss_pred cEEEEECCCCCCHHHHHHHHhccc------------ccCCCeEEECCEEcc
Confidence 567899999999999999999955 899999999998873
No 207
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.92 E-value=3.8e-05 Score=68.11 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=23.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|++++|+|+||+|||||++.+++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999999998863
No 208
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.92 E-value=1.2e-05 Score=64.47 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|.+|||||||+|.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999999743
No 209
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.91 E-value=1.3e-05 Score=64.78 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.9
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++|+|++|||||||+|.|.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 210
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.91 E-value=1.3e-05 Score=65.09 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|.+|||||||+|.|.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 478999999999999999998744
No 211
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.91 E-value=1.6e-05 Score=64.83 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.2
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
.+++|+|.+|||||||+|.|.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999985
No 212
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.91 E-value=1.4e-05 Score=66.34 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=20.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.+..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999999843
No 213
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.90 E-value=2.3e-06 Score=82.37 Aligned_cols=25 Identities=48% Similarity=0.594 Sum_probs=22.4
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.|-.++|+|++|||||||+|.|.+.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999984
No 214
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.90 E-value=3.8e-06 Score=76.63 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=35.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccc
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGE 211 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~ 211 (276)
.+++|+|+||||||||||.|.+..... .=-...|+.|+|.++|..+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~----~~aVi~~d~G~i~idg~~l~~ 52 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGY----KIAVIENEFGEVSVDDQLIGD 52 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCC----CEEEECSSCCSCCEEEEEECT
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCC----cEEEEEecCcccCccHHHHhC
Confidence 478999999999999999999853100 000126789999999887654
No 215
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.89 E-value=8.7e-06 Score=77.36 Aligned_cols=33 Identities=30% Similarity=0.312 Sum_probs=27.1
Q ss_pred HHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++.+ .+..++|+|+||||||||||+|++..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 3444445 57899999999999999999999854
No 216
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.88 E-value=1e-05 Score=67.41 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=21.8
Q ss_pred hHHHHhhccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 150 LDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 150 l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.++...+..+++++|++|||||||+|.+.+..
T Consensus 14 l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 14 LASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp ----------CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred HHHhhccCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455555556689999999999999999999743
No 217
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.88 E-value=4.9e-05 Score=62.74 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=60.4
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEeCCCCCCHHHH--------------HH
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL--------------NT 127 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~-r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~--------------~~ 127 (276)
|...+.+..+.++|.+++|+|+..|.. ...+. .++..... .++|+++|.||+|+.+.... +.
T Consensus 78 ~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 156 (194)
T 2atx_A 78 DYDRLRPLSYPMTDVFLICFSVVNPAS-FQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ 156 (194)
T ss_dssp SSTTTGGGGCTTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHH
T ss_pred chhHHHHHhcCCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHH
Confidence 334455567889999999999976532 22332 44444443 38899999999999764211 12
Q ss_pred HHHHhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 128 WKSRLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 128 ~~~~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.......+++ ..+.+|+.++.+++++...+
T Consensus 157 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 187 (194)
T 2atx_A 157 GQKLAKEIGACCYVECSALTQKGLKTVFDEA 187 (194)
T ss_dssp HHHHHHHHTCSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeeCCCCCCHHHHHHHH
Confidence 2233344566 78889999888888876654
No 218
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.88 E-value=1.4e-05 Score=65.83 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|++|||||||+|.|.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 369999999999999999999743
No 219
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.88 E-value=4.1e-05 Score=62.98 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=60.5
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHHHHHHHHH-----hhhcCce
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSR-----LHTWGYE 138 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~-----~~~~~~~ 138 (276)
.+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+....+.+... +...+++
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 153 (187)
T 1zj6_A 75 SSWNTYYTNTEFVIVVVDSTDRE-RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH 153 (187)
T ss_dssp GGGHHHHTTCCEEEEEEETTCTT-THHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE
T ss_pred HHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcE
Confidence 34445678999999999998763 34455555544433 57899999999999763222222222 2334667
Q ss_pred eEEEecCCccchHHHHhhc
Q 023887 139 PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (276)
++.+|+.++.+++++...+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l 172 (187)
T 1zj6_A 154 IQACCALTGEGLCQGLEWM 172 (187)
T ss_dssp EEECBTTTTBTHHHHHHHH
T ss_pred EEEccCCCCcCHHHHHHHH
Confidence 8899999998888877654
No 220
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.88 E-value=1.5e-05 Score=63.44 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.2
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|.+|||||||+|.|.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999999743
No 221
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.88 E-value=1.2e-05 Score=65.91 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|++|||||||+|.|.+..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 469999999999999999999854
No 222
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.87 E-value=2e-05 Score=65.14 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 379999999999999999999844
No 223
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.87 E-value=5.8e-06 Score=70.92 Aligned_cols=27 Identities=44% Similarity=0.614 Sum_probs=24.6
Q ss_pred ccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 157 LRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 157 l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+|+.++|+||||||||||+|+|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 379999999999999999999999754
No 224
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.87 E-value=2.4e-05 Score=62.43 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.|.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 225
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.87 E-value=4e-06 Score=69.79 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
|++++|+|+||||||||++.|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 56899999999999999999986
No 226
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.86 E-value=1.5e-05 Score=65.08 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.2
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|++|||||||+|.|.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998743
No 227
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.86 E-value=2.2e-05 Score=65.39 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++|+|.+|||||||+|.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999854
No 228
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.86 E-value=3.4e-05 Score=64.74 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=59.9
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh--cCCCEEEEEeCCCCCCHHH----------HHHHHHHh
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES--TGIPLTLALNKVELVDEEV----------LNTWKSRL 132 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~--~~~~~~ivlnK~Dl~~~~~----------~~~~~~~~ 132 (276)
+-..+.+..+.++|.+++|+|+..|.......+.++...+. .++|+++|.||+|+.++.. .+......
T Consensus 69 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~ 148 (212)
T 2j0v_A 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR 148 (212)
T ss_dssp CCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH
Confidence 33344455788999999999997653222222244444443 3889999999999965432 22223334
Q ss_pred hhcCc-eeEEEecCCccchHHHHhhc
Q 023887 133 HTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 133 ~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
..+++ +.+.+|+.++.+++++...+
T Consensus 149 ~~~~~~~~~~~Sa~~g~gi~~l~~~l 174 (212)
T 2j0v_A 149 KQIGAAAYIECSSKTQQNVKAVFDTA 174 (212)
T ss_dssp HHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHcCCceEEEccCCCCCCHHHHHHHH
Confidence 55675 78889999888888776653
No 229
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.86 E-value=2.2e-05 Score=63.64 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=58.3
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEe
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s 143 (276)
+.+..+.++|.+++|+|+..|. +...+.+++..... .++|+++|+||+|+.++. ..+.........+++++.+|
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 154 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKA-SFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETS 154 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 3445678999999999997653 22334445444332 578999999999997532 11222233445678889999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 155 a~~~~gi~~l~~~l 168 (180)
T 2g6b_A 155 AKTGLNVDLAFTAI 168 (180)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99998888876654
No 230
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.86 E-value=2.2e-06 Score=79.46 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=30.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccc----cceeec
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPIL----GSKWFE 205 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~----G~i~~~ 205 (276)
|++++|+|+||+|||||+++|+|.. .|++ |+++++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~------------~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF------------NTTSAWEYGREFVF 208 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT------------TCEEECCTTHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh------------CCCcchhhHHHHHH
Confidence 8999999999999999999999954 7777 887763
No 231
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.85 E-value=3.4e-05 Score=62.55 Aligned_cols=89 Identities=11% Similarity=0.155 Sum_probs=61.0
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+.. ..+.........+++++.+
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (181)
T 2efe_B 76 SLAPMYYRGAAAAIIVFDVTNQA-SFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMET 154 (181)
T ss_dssp GGTHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEE
Confidence 34445678999999999987652 22345555544443 367899999999996532 1223334445567889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 155 Sa~~g~gi~~l~~~l 169 (181)
T 2efe_B 155 SAKTATNVKEIFYEI 169 (181)
T ss_dssp CSSSCTTHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 999998888877654
No 232
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.85 E-value=9e-06 Score=65.30 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++++|.+|||||||+|.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998743
No 233
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.85 E-value=1.5e-05 Score=65.62 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++++|++|||||||+|.|.+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999999843
No 234
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.85 E-value=2e-05 Score=65.87 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|++|||||||+|.|.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999743
No 235
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.85 E-value=4.1e-06 Score=73.78 Aligned_cols=40 Identities=28% Similarity=0.452 Sum_probs=34.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHc---CCCCCCccccccCccccccccee--------eccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALR---SSPHASDAADVDNWFEPILGSKW--------FEDQRV 209 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~---g~~~~~~~~~~~~~~~p~~G~i~--------~~g~~~ 209 (276)
+|.+++|+|+|||||||++++|+ | ++.|++|.++ .+|.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg------------~~~~d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN------------WRLLDSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT------------CEEEEHHHHHHHHHHHHHHTTCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC------------CCcCCCCceehHhHHHHHHcCCCc
Confidence 68899999999999999999999 7 4488999998 677655
No 236
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.85 E-value=1.7e-05 Score=65.41 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999998643
No 237
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.85 E-value=3.5e-05 Score=63.53 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=59.3
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh------cCCCEEEEEeCCCCCCHHHHHHHHHHh--h---hc
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVDEEVLNTWKSRL--H---TW 135 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~------~~~~~~ivlnK~Dl~~~~~~~~~~~~~--~---~~ 135 (276)
..+.+..+.++|.+++|+|+..+. +...+..++..... .++|+++|+||+|+.+....+.+...+ . ..
T Consensus 81 ~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 159 (190)
T 2h57_A 81 RNLWEHYYKEGQAIIFVIDSSDRL-RMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDK 159 (190)
T ss_dssp GGGGGGGGGGCSEEEEEEETTCHH-HHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSS
T ss_pred HHHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCC
Confidence 344455788999999999997642 22233344433322 478999999999997642222232322 1 23
Q ss_pred CceeEEEecCCccchHHHHhhc
Q 023887 136 GYEPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 136 ~~~~~~~s~~~~~~l~~l~~~l 157 (276)
++.++.+|+.++.+++++...+
T Consensus 160 ~~~~~~~Sa~~~~gi~~l~~~l 181 (190)
T 2h57_A 160 PWHICASDAIKGEGLQEGVDWL 181 (190)
T ss_dssp CEEEEECBTTTTBTHHHHHHHH
T ss_pred ceEEEEccCCCCcCHHHHHHHH
Confidence 5678999999999988877654
No 238
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.84 E-value=1.8e-05 Score=64.29 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|||||||+|.|.+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 479999999999999999999743
No 239
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.84 E-value=1.8e-05 Score=65.91 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..++|+|.+|||||||+|.|.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 478999999999999999998744
No 240
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.84 E-value=6.5e-06 Score=68.85 Aligned_cols=23 Identities=39% Similarity=0.717 Sum_probs=21.3
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|++|||||||+|.|.|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 241
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.84 E-value=1.9e-05 Score=64.87 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++|+|++|||||||+|.|.+..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998743
No 242
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.84 E-value=1.8e-05 Score=64.52 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.8
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|++|||||||+|.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999999743
No 243
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.83 E-value=2.8e-05 Score=64.08 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=61.1
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.++.. .+........++++++.+
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQE-SFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEA 164 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred hhHHHhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 34455788999999999997652 22334445444443 4789999999999965321 122233445567899999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 165 Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 165 SAKENINVKQVFERL 179 (189)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 999999988877654
No 244
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.83 E-value=1.8e-05 Score=66.72 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999743
No 245
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.83 E-value=2.1e-05 Score=62.21 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|.+|||||||+|.|.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998743
No 246
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.83 E-value=6.6e-05 Score=60.13 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=59.2
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHHHHHHHHH-----hhhcCce
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSR-----LHTWGYE 138 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~-----~~~~~~~ 138 (276)
.+.+..+.++|.+++|+|+..|. +...+..++..... .++|+++|+||+|+.+....+.+... +...+++
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (171)
T 1upt_A 66 PYWRCYYSNTDAVIYVVDSCDRD-RIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQ 144 (171)
T ss_dssp GGGGGGCTTCSEEEEEEETTCCT-THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEE
T ss_pred HHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceE
Confidence 34455678999999999998764 33344444433322 57899999999999764222222222 2234567
Q ss_pred eEEEecCCccchHHHHhhc
Q 023887 139 PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (276)
++.+|+.++.+++++...+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l 163 (171)
T 1upt_A 145 IFKTSATKGTGLDEAMEWL 163 (171)
T ss_dssp EEECCTTTCTTHHHHHHHH
T ss_pred EEECcCCCCcCHHHHHHHH
Confidence 8889999998888876654
No 247
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.82 E-value=2e-05 Score=64.97 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 379999999999999999999743
No 248
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.82 E-value=1.8e-05 Score=66.23 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-.++|+|++|||||||+|.|.+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4579999999999999999999743
No 249
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.81 E-value=2.8e-05 Score=63.49 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999743
No 250
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.81 E-value=2.5e-05 Score=65.27 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=58.4
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEEe
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s 143 (276)
.+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+... .+........++++++.+|
T Consensus 84 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 162 (213)
T 3cph_A 84 TITTAYYRGAMGIILVYDVTDER-TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESS 162 (213)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECB
T ss_pred HHHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEe
Confidence 34455688999999999987652 22334444443332 3689999999999953221 1122233345678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++.+...+
T Consensus 163 a~~~~gi~~l~~~l 176 (213)
T 3cph_A 163 AKNDDNVNEIFFTL 176 (213)
T ss_dssp TTTTBSSHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99988887766543
No 251
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.81 E-value=6.3e-06 Score=69.56 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=23.3
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|+.++|+|+||||||||+++|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999999873
No 252
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.81 E-value=9.8e-06 Score=66.87 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
...++++|++|||||||+|.|.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999999853
No 253
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.81 E-value=5.2e-06 Score=70.12 Aligned_cols=46 Identities=26% Similarity=0.211 Sum_probs=34.6
Q ss_pred HHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccce--eeccccc
Q 023887 151 DSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSK--WFEDQRV 209 (276)
Q Consensus 151 ~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i--~~~g~~~ 209 (276)
+...... +|++++|+|+||||||||.++|.+.. . ..|.+ ++++..+
T Consensus 16 ~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l------------~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 16 DRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML------------Y-QKGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH------------H-HTTCCEEEEEHHHH
T ss_pred HHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH------------H-hcCceEEEecCchh
Confidence 3334333 78999999999999999999999854 3 55776 6666554
No 254
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.80 E-value=1.7e-05 Score=77.78 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=22.2
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|+|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 589999999999999999999965
No 255
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.80 E-value=2.8e-07 Score=88.86 Aligned_cols=101 Identities=26% Similarity=0.381 Sum_probs=59.6
Q ss_pred chHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEE
Q 023887 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSL 228 (276)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~ 228 (276)
.++.|....+|++++|+|+||+|||||+|.|.+.. . .....++...+.|+|+++...+
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~------------~----------~~~~~i~V~~~iGerttev~el 198 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI------------A----------QEHGGISVFAGVGERTREGNDL 198 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHH------------H----------HHTCCCEEEEEESSCHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhh------------h----------hccCcEEEEeeeccCchHHHHH
Confidence 56666666699999999999999999999998743 0 1122334444666667654443
Q ss_pred Ee-cC-CC---------cEEEecCCCCCCCCChhhHHHHHHHHHHHhhcceEEEee
Q 023887 229 LP-LS-GG---------GYLADTPGFNQPSLLKVTKQSLAQTFPEVCAVGLLYMIH 273 (276)
Q Consensus 229 ~~-~~-~~---------~~iiDtPg~~~~~l~~~~~~~l~~~f~ei~~~~ii~~~H 273 (276)
+. +. .+ .+..|+|+++.. .....-.+.++|++.....+++..-
T Consensus 199 ~~~l~~~~~l~~tvvv~~~~~d~pg~r~~--~~~~~ltiAEyFrd~~G~~VLl~~D 252 (473)
T 1sky_E 199 YHEMKDSGVISKTAMVFGQMNEPPGARMR--VALTGLTMAEYFRDEQGQDGLLFID 252 (473)
T ss_dssp HHHHHHTSGGGGEEEEEECTTSCHHHHHH--HHHHHHHHHHHHHHHSCCEEEEEEE
T ss_pred HHHhhhcCCcceeEEEEEcCCCCHHHHHH--HHHHHHHHHHHHHHhcCCcEEEEec
Confidence 32 10 00 134577877321 1222336777787743333555443
No 256
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.80 E-value=2.6e-05 Score=78.53 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++-.++|+|.+|+|||||+|+|+|..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56689999999999999999999965
No 257
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.80 E-value=1.4e-05 Score=64.68 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|++|||||||+|.|.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998743
No 258
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.80 E-value=5e-05 Score=62.16 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=59.2
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHHHHHHHHHhh-----hcCce
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYE 138 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~~~-----~~~~~ 138 (276)
.+.+..+.++|.+++|+|+..|. +...+.+++..... .++|+++|+||+|+.+....+.+...+. ..+++
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQ-RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWR 155 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceE
Confidence 34455678999999999997663 23344444433322 4789999999999976432233323222 33567
Q ss_pred eEEEecCCccchHHHHhhc
Q 023887 139 PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (276)
++.+|+.++.+++++...+
T Consensus 156 ~~~~Sa~~~~gi~~l~~~l 174 (186)
T 1ksh_A 156 IQGCSAVTGEDLLPGIDWL 174 (186)
T ss_dssp EEECCTTTCTTHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHH
Confidence 8889999998888876654
No 259
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.79 E-value=2.3e-05 Score=65.60 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=20.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC--
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 479999999999999999999743
No 260
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.79 E-value=6.3e-06 Score=76.64 Aligned_cols=23 Identities=52% Similarity=0.752 Sum_probs=20.7
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.++++|++|+|||||+|.|.+..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998854
No 261
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.78 E-value=2e-05 Score=65.20 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 479999999999999999999743
No 262
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.78 E-value=3.4e-05 Score=62.32 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=21.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.|.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999974
No 263
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.78 E-value=4.1e-05 Score=63.46 Aligned_cols=90 Identities=16% Similarity=0.245 Sum_probs=62.8
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEE
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 141 (276)
..+....+.++|.+++|+|+..+. +...+..++..... .++|+++|+||+|+.++. ..+........++++++.
T Consensus 86 ~~~~~~~~~~~d~iilV~d~~~~~-s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 164 (192)
T 2fg5_A 86 HSLAPMYYRGSAAAVIVYDITKQD-SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVE 164 (192)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCTH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEE
T ss_pred HhhhHHhhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 334445688999999999997653 33345555544433 378999999999996421 123334445667888999
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 165 ~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 165 TSAKNAINIEELFQGI 180 (192)
T ss_dssp CBTTTTBSHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHH
Confidence 9999999988887765
No 264
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.78 E-value=2.2e-05 Score=63.49 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.|.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999974
No 265
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.78 E-value=1.9e-05 Score=64.78 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=61.3
Q ss_pred cccchhccccEEEEEEEcCCCCC-----CHHHHHHHHHHHH--hcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKL-----EPFALTRFLVEAE--STGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPL 140 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~-----~~~~l~r~l~~a~--~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~ 140 (276)
+.+..+.++|.+++|+|+..|.. +...+.+++...+ ..++|+++|.||+|+.+....+.....+...++ .++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 169 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVL 169 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEE
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEE
Confidence 33456789999999999974421 1123334443321 257899999999999765434444556667788 899
Q ss_pred EEecCCccchHHHHhhc
Q 023887 141 FCSVESKLGLDSLLQRL 157 (276)
Q Consensus 141 ~~s~~~~~~l~~l~~~l 157 (276)
.+|+.++.+++++...+
T Consensus 170 ~~Sa~~~~gv~~l~~~l 186 (198)
T 3t1o_A 170 EAVATEGKGVFETLKEV 186 (198)
T ss_dssp ECBGGGTBTHHHHHHHH
T ss_pred EEecCCCcCHHHHHHHH
Confidence 99999999988876654
No 266
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.78 E-value=1.9e-05 Score=63.39 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.-.++++|.+|||||||+|.|.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999864
No 267
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.78 E-value=2.6e-05 Score=64.75 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.+..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 479999999999999999998743
No 268
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.77 E-value=8e-06 Score=72.39 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=32.5
Q ss_pred eeE-EEec-CCccchHHHHhhc-c---CCEEEEEecCCCChhHHHHHHcCC
Q 023887 138 EPL-FCSV-ESKLGLDSLLQRL-R---DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 138 ~~~-~~s~-~~~~~l~~l~~~l-~---g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.+ .++| .....++++++.+ + |++++|+|+||+||||+.++|.+.
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 21 GSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp -----------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred cceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 344 5666 5566899999987 5 999999999999999999999873
No 269
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.77 E-value=6.1e-05 Score=60.01 Aligned_cols=88 Identities=15% Similarity=0.080 Sum_probs=58.2
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHHHHHHHHHh-----hhcCcee
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEP 139 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~~ 139 (276)
+.+..+.++|.+++|+|+..|. +...+..++..... .+.|+++|.||+|+.+....+.+...+ ...++++
T Consensus 60 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (164)
T 1r8s_A 60 LWRHYFQNTQGLIFVVDSNDRE-RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 138 (164)
T ss_dssp HHHHHTTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEE
Confidence 3344678999999999997663 23344444443332 378999999999997642222222222 1234568
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 139 ~~~Sa~~~~gi~~l~~~l 156 (164)
T 1r8s_A 139 QATCATSGDGLYEGLDWL 156 (164)
T ss_dssp EECBTTTTBTHHHHHHHH
T ss_pred EEcccCCCcCHHHHHHHH
Confidence 889999999988877654
No 270
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.77 E-value=2.8e-05 Score=62.68 Aligned_cols=90 Identities=9% Similarity=0.207 Sum_probs=60.3
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEE
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 141 (276)
..+....+.++|.+++|+|+..|. +...+..++.... ..++|+++|+||+|+.++.. .+.........+++++.
T Consensus 77 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 155 (179)
T 2y8e_A 77 RSLIPSYIRDSTVAVVVYDITNTN-SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIE 155 (179)
T ss_dssp GGGSHHHHHTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEE
Confidence 334455688999999999997652 2223334433322 34789999999999965321 22233444556788999
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 156 ~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 156 TSAKAGYNVKQLFRRV 171 (179)
T ss_dssp EBTTTTBSHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHH
Confidence 9999999988877654
No 271
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.77 E-value=3.6e-05 Score=62.77 Aligned_cols=89 Identities=11% Similarity=0.169 Sum_probs=55.1
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..|. +...+.+++..... .++|+++|.||+|+.+.. ..+.........+++++.+
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 150 (183)
T 2fu5_C 72 TITTAYYRGAMGIMLVYDITNEK-SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMET 150 (183)
T ss_dssp --CCTTTTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEEC
T ss_pred hhHHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEE
Confidence 33455678999999999997653 23345555544443 478999999999997521 1122233445567889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 151 Sa~~~~~i~~l~~~l 165 (183)
T 2fu5_C 151 SAKANINVENAFFTL 165 (183)
T ss_dssp CC---CCHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999988888776654
No 272
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.76 E-value=2.9e-05 Score=63.10 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.+++|+|.+|||||||+|.|.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3579999999999999999999743
No 273
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.76 E-value=5.5e-06 Score=75.69 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=24.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|++++|+|+||||||||+++|.|..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 68999999999999999999999854
No 274
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.76 E-value=3.4e-05 Score=64.87 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..+++++|.+|||||||+|.|.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 275
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.76 E-value=7.6e-05 Score=62.79 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 379999999999999999999843
No 276
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.76 E-value=2.4e-05 Score=73.09 Aligned_cols=22 Identities=50% Similarity=0.646 Sum_probs=20.3
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++|+|.||||||||+|+|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999974
No 277
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.76 E-value=8.9e-06 Score=68.76 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|++++|+|+||||||||+++|.|..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999999864
No 278
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.76 E-value=2.6e-05 Score=62.92 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=59.8
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEe
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s 143 (276)
+.+..+.++|.+++|+|+..+. +...+..++.... ..++|+++|+||+|+.++. ..+.........++.++.+|
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRS-TYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEAS 158 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred hHHHHhccCCEEEEEEeCcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 3445678999999999997652 2233444443333 2578899999999996432 11233344556788899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 159 a~~~~gi~~l~~~l 172 (179)
T 1z0f_A 159 AKTGENVEDAFLEA 172 (179)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99999888876553
No 279
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.75 E-value=2.2e-05 Score=65.45 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++|+|.+|||||||+|.|.+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 4579999999999999999998743
No 280
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.75 E-value=3.1e-05 Score=63.19 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=58.7
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
+.+..+.++|.+++|+|+..|. +...+..++..... .++|+++|+||+|+.++. ..+.........+++++.+
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQ-SFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET 164 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHcCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence 3445678999999999997652 22233344433332 578999999999996531 1122233444567889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 165 Sa~~~~~v~~l~~~l 179 (195)
T 3bc1_A 165 SAANGTNISHAIEML 179 (195)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 999988888776554
No 281
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.75 E-value=2.2e-05 Score=63.50 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=22.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+...++++|.+|||||||+|.|.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 35689999999999999999999854
No 282
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.75 E-value=3.4e-05 Score=64.54 Aligned_cols=90 Identities=20% Similarity=0.314 Sum_probs=59.3
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEeCCCCCCHHHHH--------------HHH
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAES--TGIPLTLALNKVELVDEEVLN--------------TWK 129 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l-~r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~~--------------~~~ 129 (276)
..+.+..+.++|.+++|+|+..+. +...+ +.++..... .++|+++|+||+|+.+..... ...
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 165 (201)
T 2gco_A 87 DRLRPLSYPDTDVILMCFSIDSPD-SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGR 165 (201)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHH
T ss_pred HHHHHHhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHH
Confidence 344455678999999999997652 22233 344444433 388999999999997653211 122
Q ss_pred HHhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 130 SRLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 130 ~~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.....+++ .++.+|+.++.+++++...+
T Consensus 166 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~i 194 (201)
T 2gco_A 166 DMANRISAFGYLECSAKTKEGVREVFEMA 194 (201)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHhCCCcEEEEeeCCCCCCHHHHHHHH
Confidence 23344566 78888998888888876654
No 283
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.75 E-value=3.1e-05 Score=63.39 Aligned_cols=24 Identities=13% Similarity=0.455 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.-+++++|.+|||||||+|.+.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999974
No 284
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.75 E-value=9e-05 Score=61.49 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=58.8
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHH-HHHHHHH--hcCCCEEEEEeCCCCCCHHH--------------HHH
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAE--STGIPLTLALNKVELVDEEV--------------LNT 127 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~-r~l~~a~--~~~~~~~ivlnK~Dl~~~~~--------------~~~ 127 (276)
+...+.+..+.++|.+++|+|+..|.. ...+. .++.... ..++|+++|.||+|+.+... .+.
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 158 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPSS-FQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHHH-HHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence 444455567889999999999976532 22222 3433333 24889999999999965311 111
Q ss_pred HHHHhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 128 WKSRLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 128 ~~~~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.......+++ .++.+|+.++.+++.+...+
T Consensus 159 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 189 (201)
T 2q3h_A 159 AKLLAEEIKAASYIECSALTQKNLKEVFDAA 189 (201)
T ss_dssp HHHHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEEecCCCCCHHHHHHHH
Confidence 2223344566 78889998888888776553
No 285
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.74 E-value=2e-05 Score=74.32 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHHHHcCCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++|+|.+|||||||+|+|.+..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 286
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.74 E-value=0.00011 Score=60.40 Aligned_cols=89 Identities=13% Similarity=0.035 Sum_probs=58.3
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHHHHHHHHHh-----hhcCce
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYE 138 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~ 138 (276)
.+.+..+.++|.+++|+|+..|. +...+..++..... .++|+++|+||+|+.+....+++...+ ...+++
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 159 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDRD-RMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWT 159 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCCT-THHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceE
Confidence 33445678999999999998764 33344444433322 478999999999997642222222222 223457
Q ss_pred eEEEecCCccchHHHHhhc
Q 023887 139 PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (276)
++.+|+.++.+++++...+
T Consensus 160 ~~~~Sa~~~~gi~~l~~~l 178 (189)
T 2x77_A 160 IVKSSSKTGDGLVEGMDWL 178 (189)
T ss_dssp EEECCTTTCTTHHHHHHHH
T ss_pred EEEccCCCccCHHHHHHHH
Confidence 8889999988888876654
No 287
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.74 E-value=3.6e-05 Score=63.59 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 479999999999999999999743
No 288
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.74 E-value=3.3e-05 Score=63.51 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++++|.+|||||||+|.|.+..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCC
Confidence 3479999999999999999998743
No 289
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.73 E-value=0.00011 Score=64.46 Aligned_cols=82 Identities=17% Similarity=0.134 Sum_probs=57.3
Q ss_pred cccEEEEEEEcCCC-CCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHHHHHHHHHhhh-cCceeEEEecCCccc
Q 023887 76 NVDHLLLLFSMDQP-KLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLHT-WGYEPLFCSVESKLG 149 (276)
Q Consensus 76 nvD~vl~v~~~~~p-~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 149 (276)
++|.+++|+|+..| ..+...+.+++.... ..++|+++|.||+||.++...+........ .++..+.+|+.++.+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 79999999999765 234455666554433 357899999999999776544433333333 367889999999999
Q ss_pred hHHHHhhc
Q 023887 150 LDSLLQRL 157 (276)
Q Consensus 150 l~~l~~~l 157 (276)
++++...+
T Consensus 242 v~elf~~l 249 (255)
T 3c5h_A 242 VDLAFSTL 249 (255)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876654
No 290
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.73 E-value=5.4e-05 Score=63.80 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
...++|+|++|||||||+|.|.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999854
No 291
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.73 E-value=1.9e-05 Score=66.99 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.2
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
-+++++|.+|||||||+|.+..
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999543
No 292
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.73 E-value=4.4e-05 Score=61.00 Aligned_cols=89 Identities=10% Similarity=0.138 Sum_probs=59.5
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH-HHHHHHHHhhhcCceeEEEe
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~s 143 (276)
.+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+.. ..+.........+++++.+|
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 145 (170)
T 1g16_A 67 TITTAYYRGAMGIILVYDITDER-TFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESS 145 (170)
T ss_dssp CCCHHHHTTEEEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECB
T ss_pred hhHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEE
Confidence 34455678999999999997653 22334445443332 478999999999995422 11222233455678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 146 a~~~~gv~~l~~~l 159 (170)
T 1g16_A 146 AKNDDNVNEIFFTL 159 (170)
T ss_dssp TTTTBSHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99998888876654
No 293
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.72 E-value=4e-05 Score=61.33 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=59.1
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEe
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s 143 (276)
+.+..+.++|.+++|+|+..+. +...+.+++.... ..++|+++|+||+|+.++. ..+.........+++.+.+|
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDED-SFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTS 149 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred hHHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEec
Confidence 3444678999999999987653 2334444443332 3578999999999996531 11222334455678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 150 a~~~~gi~~l~~~l 163 (170)
T 1z08_A 150 AKQNKGIEELFLDL 163 (170)
T ss_dssp TTTTBSHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99999988877654
No 294
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.72 E-value=5.4e-05 Score=62.96 Aligned_cols=89 Identities=15% Similarity=0.229 Sum_probs=60.4
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..+. +...+..++..... .++|+++|+||+|+.+.. ..+........++++++.+
T Consensus 72 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (203)
T 1zbd_A 72 TITTAYYRGAMGFILMYDITNEE-SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEA 150 (203)
T ss_dssp HHHHTTGGGCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEEC
T ss_pred chHHHhhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEE
Confidence 34455678999999999997653 22344455444433 478999999999997532 1122233345567889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 151 Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 151 SAKDNINVKQTFERL 165 (203)
T ss_dssp BTTTTBSSHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 999988888776654
No 295
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.72 E-value=6.4e-05 Score=60.41 Aligned_cols=86 Identities=9% Similarity=0.148 Sum_probs=57.0
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEec
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSV 144 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~ 144 (276)
+...+++|.+++|+++..|. +...+.+++..... .++|+++|.||+|+.+... .+........++++++.+|+
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 150 (175)
T 2nzj_A 72 ESCLQGGSAYVIVYSIADRG-SFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSA 150 (175)
T ss_dssp HHTTTSCSEEEEEEETTCHH-HHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBT
T ss_pred HhhcccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEec
Confidence 34567899999999997653 23344455443333 3789999999999975321 11222333456788999999
Q ss_pred CCccchHHHHhhc
Q 023887 145 ESKLGLDSLLQRL 157 (276)
Q Consensus 145 ~~~~~l~~l~~~l 157 (276)
.++.+++++...+
T Consensus 151 ~~g~gi~~l~~~l 163 (175)
T 2nzj_A 151 TLQHNVAELFEGV 163 (175)
T ss_dssp TTTBSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9999988877654
No 296
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.72 E-value=3.4e-05 Score=63.58 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-+++|+|++|||||||+|.+.+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999985
No 297
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.72 E-value=3e-05 Score=62.93 Aligned_cols=92 Identities=16% Similarity=0.242 Sum_probs=60.3
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEeCCCCCCHHHH------------HHHH
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL------------NTWK 129 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~-r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~------------~~~~ 129 (276)
+...+.+..+.++|.+++|+|+..|.. ...+. .++..... .++|+++|.||+|+.+.... +...
T Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 68 DYNRLRPLSYRGADVFILAFSLISKAS-YENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp TTTTTGGGGGTTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH
T ss_pred hhhhhHHhhccCCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHH
Confidence 333445567889999999999976532 22232 34433333 37899999999999654321 2222
Q ss_pred HHhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 130 SRLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 130 ~~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.....+++ +.+.+|+.++.+++++...+
T Consensus 147 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 147 ELKKLIGAPAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp HHHHHHTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHcCCCEEEEEECCCCCCHHHHHHHH
Confidence 33345576 78899999999888876654
No 298
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.72 E-value=2.8e-05 Score=63.32 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..+++++|++|||||||+|.+.+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999963
No 299
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.71 E-value=0.00012 Score=59.49 Aligned_cols=88 Identities=11% Similarity=0.002 Sum_probs=58.4
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHHHHHHHHHhh-----hcCcee
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEP 139 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~-----~~~~~~ 139 (276)
+.+..+.++|.+++|+|+..+ .+...+..++.... ..++|+++|+||+|+.+....+.+...+. ..++++
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 78 YWRCYYADTAAVIFVVDSTDK-DRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp TGGGTTTTEEEEEEEEETTCT-TTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE
T ss_pred HHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 344567899999999999765 33344444444333 35789999999999976422222223222 234568
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 157 ~~~Sa~~~~gi~~l~~~l 174 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWL 174 (183)
T ss_dssp EEEBGGGTBTHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHH
Confidence 899999998888876654
No 300
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.71 E-value=7e-05 Score=60.41 Aligned_cols=89 Identities=10% Similarity=0.136 Sum_probs=60.2
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH--hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEe
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE--STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~--~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s 143 (276)
.+....+.++|.+++|+|+..|. +...+..++.... ..++|+++|+||+|+.+.. ..+.........+++++.+|
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (181)
T 3tw8_B 73 TITSTYYRGTHGVIVVYDVTSAE-SFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETS 151 (181)
T ss_dssp SCCGGGGTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECB
T ss_pred hhHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEE
Confidence 34445688999999999997652 2334445554443 2358899999999986532 11222334455678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 152 a~~~~gi~~l~~~l 165 (181)
T 3tw8_B 152 AKENVNVEEMFNCI 165 (181)
T ss_dssp TTTTBSHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99999988876654
No 301
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.71 E-value=7.5e-06 Score=75.07 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=34.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeecccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVG 210 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~ 210 (276)
++++++|+|++|+||||++..|++. +.+..|++.+.+.++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~------------l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY------------YAELGYKVLIAAADTF 144 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH------------HHHTTCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH------------HHHCCCeEEEEeCCCc
Confidence 5789999999999999999999984 3778888887776653
No 302
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.71 E-value=5.1e-05 Score=63.30 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++|+|.+|||||||+|.|.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4579999999999999999999854
No 303
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.71 E-value=4.2e-05 Score=64.58 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-+++|+|.+|||||||+|.|.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47899999999999999999874
No 304
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.71 E-value=2e-05 Score=75.52 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..|+|+|++++|||||||.|.|.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 46899999999999999999974
No 305
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.70 E-value=3.9e-05 Score=61.18 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=59.8
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH--hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEe
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE--STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~--~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s 143 (276)
.+.+..+.++|.+++|+++..+. +...+..++.... ..+.|+++|+||+|+.++. ..+.........+++++.+|
T Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T 1z2a_A 69 AITKAYYRGAQACVLVFSTTDRE-SFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTS 147 (168)
T ss_dssp CCCHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECB
T ss_pred HHHHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 34455678999999999997653 2223333333222 2588999999999996532 12223344456688899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 148 a~~~~~i~~l~~~l 161 (168)
T 1z2a_A 148 VKEDLNVSEVFKYL 161 (168)
T ss_dssp TTTTBSSHHHHHHH
T ss_pred cCCCCCHHHHHHHH
Confidence 99999888876654
No 306
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.70 E-value=5e-05 Score=60.48 Aligned_cols=88 Identities=23% Similarity=0.315 Sum_probs=57.4
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHH----HHHHHHhcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhc-CceeEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTR----FLVEAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTW-GYEPLF 141 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r----~l~~a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~-~~~~~~ 141 (276)
+.+....++|.+++|+++..|. +...+.. ++......++|+++|+||+|+.++.. .+........+ +++++.
T Consensus 67 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T 1c1y_A 67 MRDLYMKNGQGFALVYSITAQS-TFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLE 145 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEE
Confidence 3345678999999999997652 1122222 22222235889999999999965321 12222334445 678899
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 146 ~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 146 SSAKSKINVNEIFYDL 161 (167)
T ss_dssp CBTTTTBSHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHH
Confidence 9999999998887654
No 307
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.69 E-value=1.6e-05 Score=66.60 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=24.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|+.++|+|+||||||||++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999999999865
No 308
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.69 E-value=7.8e-05 Score=60.72 Aligned_cols=89 Identities=18% Similarity=0.257 Sum_probs=58.5
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHH----HHHhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLV----EAESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~----~a~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 141 (276)
.+.+..+.++|.+++|+++..+. +...+..++. .....++|+++|.||+|+.+.. ..+........++.+++.
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 159 (183)
T 3kkq_A 81 AMREQYMRTGDGFLIVYSVTDKA-SFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIE 159 (183)
T ss_dssp SSHHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEE
Confidence 34445688999999999997652 1222333322 2234678999999999996521 112223344556788999
Q ss_pred EecC-CccchHHHHhhc
Q 023887 142 CSVE-SKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~-~~~~l~~l~~~l 157 (276)
+|+. ++.+++++...+
T Consensus 160 ~Sa~~~~~~v~~l~~~l 176 (183)
T 3kkq_A 160 TSAKDPPLNVDKTFHDL 176 (183)
T ss_dssp EBCSSSCBSHHHHHHHH
T ss_pred eccCCCCCCHHHHHHHH
Confidence 9999 888888876553
No 309
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.69 E-value=8.5e-05 Score=61.78 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=58.5
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHHHHHHHHHhh-----hcCcee
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEP 139 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~~~~~~~~~~-----~~~~~~ 139 (276)
+.+..+.++|.+++|+|+..|. +...+..++..... .++|+++|.||+|+.+....+++...+. ..++++
T Consensus 89 ~~~~~~~~~d~iilv~D~~~~~-s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 167 (192)
T 2b6h_A 89 LWRHYFQNTQGLIFVVDSNDRE-RVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYV 167 (192)
T ss_dssp THHHHHHTCCEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 3445678999999999997663 33344454443332 4789999999999976422222322221 234568
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 168 ~~~SA~~g~gi~~l~~~l 185 (192)
T 2b6h_A 168 QATCATQGTGLYDGLDWL 185 (192)
T ss_dssp EECBTTTTBTHHHHHHHH
T ss_pred EECcCCCcCCHHHHHHHH
Confidence 889999998888877654
No 310
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.69 E-value=8.1e-05 Score=59.41 Aligned_cols=92 Identities=13% Similarity=0.139 Sum_probs=60.8
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCcee
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEP 139 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~ 139 (276)
+...+.+..+.++|.+++|+|+..|. +...+..++.... ..+.|+++|.||+|+.++.. .+.........++++
T Consensus 67 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 145 (170)
T 1z0j_A 67 RFRALAPMYYRGSAAAIIVYDITKEE-TFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIF 145 (170)
T ss_dssp GGGGGTHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEE
T ss_pred hhhcccHhhCcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEE
Confidence 33444455778999999999997653 2233444444333 34567889999999975321 122223345567889
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 146 ~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 146 VETSAKNAININELFIEI 163 (170)
T ss_dssp EECBTTTTBSHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHHHH
Confidence 999999999988877654
No 311
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.69 E-value=3.8e-05 Score=61.25 Aligned_cols=89 Identities=9% Similarity=0.145 Sum_probs=60.1
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..|. +...++.++..... .+.|+++|.||+|+.++. ..+.........+++++.+
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1r2q_A 70 SLAPMYYRGAQAAIVVYDITNEE-SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMET 148 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhHHhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEE
Confidence 34445678999999999997653 23345555544432 367888899999996431 1122233445567888999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 149 Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 149 SAKTSMNVNEIFMAI 163 (170)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999999988877664
No 312
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.68 E-value=5.3e-05 Score=62.62 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=59.8
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+... .+.........++.++.+
T Consensus 85 ~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 163 (191)
T 2a5j_A 85 SITRSYYRGAAGALLVYDITRRE-TFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMET 163 (191)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEE
T ss_pred hhHHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEE
Confidence 33455688999999999997642 22334445444432 4789999999999964211 122223345567889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 164 Sa~~~~gi~~l~~~l 178 (191)
T 2a5j_A 164 SAKTACNVEEAFINT 178 (191)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999998888876654
No 313
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.68 E-value=4.7e-05 Score=62.74 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.-+++|+|.+|||||||+|.|.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999984
No 314
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.68 E-value=2.2e-05 Score=64.76 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++++|.+|||||||+|.|.+..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Confidence 479999999999999999998743
No 315
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.68 E-value=4.8e-05 Score=65.14 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
+|+.++|+|+||+|||||+..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999965554
No 316
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.67 E-value=7.2e-05 Score=59.10 Aligned_cols=88 Identities=17% Similarity=0.289 Sum_probs=58.3
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEEe
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s 143 (276)
+.+..+.++|.+++|+++..+. +...+..++.... ..++|+++|+||+|+.+.+. .+.........+++++.+|
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 145 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNTK-SFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETS 145 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHhhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEec
Confidence 3345678999999999987542 2223333333222 23789999999999976321 1222233455678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 146 a~~~~gi~~l~~~l 159 (166)
T 2ce2_X 146 AKTRQGVEDAFYTL 159 (166)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99999888877654
No 317
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.67 E-value=5.5e-05 Score=62.44 Aligned_cols=88 Identities=17% Similarity=0.098 Sum_probs=57.5
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHHHHHHHHHhh-----hcCcee
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEP 139 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~-----~~~~~~ 139 (276)
+.+..+.++|.+++|+|+..+. +...+..++.... ..++|+++|+||+|+.+....+++...+. ..++.+
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQE-KIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICC 161 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHHccCCEEEEEEECCCHH-HHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeE
Confidence 3445678999999999997653 2333444443332 25789999999999975422222222221 234567
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 162 ~~~SA~~g~gv~~l~~~l 179 (188)
T 1zd9_A 162 YSISCKEKDNIDITLQWL 179 (188)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 889999888888877654
No 318
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.66 E-value=0.00011 Score=58.54 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=54.3
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (276)
+.+....++|.+++|+++..|. +...+..++..... .++|+++|.||+|+.++.. .+.........+.+++.+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (166)
T 3q72_A 65 LPGHCMAMGDAYVIVYSVTDKG-SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIET 143 (166)
T ss_dssp --------CCEEEEEEETTCHH-HHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhhhhhhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEe
Confidence 3344578999999999998653 23344444443332 4789999999999975321 112223344567889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 144 Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 144 SAALHHNVQALFEGV 158 (166)
T ss_dssp BGGGTBSHHHHHHHH
T ss_pred ccCCCCCHHHHHHHH
Confidence 999999988876654
No 319
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.66 E-value=1.8e-05 Score=67.41 Aligned_cols=26 Identities=42% Similarity=0.694 Sum_probs=24.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|+.++|+||||||||||++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 68999999999999999999999865
No 320
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.65 E-value=4.5e-05 Score=62.47 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++++|.+|||||||+|.|.+..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999843
No 321
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.65 E-value=5e-05 Score=64.60 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=21.3
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+|||||||+|.|.+..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999999743
No 322
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.65 E-value=5.3e-05 Score=61.73 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.7
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++|+|.+|||||||+|.|.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3478999999999999999999743
No 323
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.65 E-value=0.00012 Score=61.07 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=60.7
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEE
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 141 (276)
..+.+..+.++|.+++|+|+..|. +...+..++.... ..+.|+++|+||+|+.+.. ..+.........+++++.
T Consensus 71 ~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 149 (206)
T 2bcg_Y 71 RTITSSYYRGSHGIIIVYDVTDQE-SFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLE 149 (206)
T ss_dssp TCCCGGGGTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHhccCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEE
Confidence 334455788999999999997653 2334445544433 2468899999999997532 112222334456788899
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++.+...+
T Consensus 150 ~Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 150 TSALDSTNVEDAFLTM 165 (206)
T ss_dssp CCTTTCTTHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHH
Confidence 9999998888877664
No 324
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.64 E-value=5.2e-05 Score=62.70 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=60.4
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHH-HHHHHHHH--hcCCCEEEEEeCCCCCCH----HHHHHHHHHhhhcCc
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAE--STGIPLTLALNKVELVDE----EVLNTWKSRLHTWGY 137 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l-~r~l~~a~--~~~~~~~ivlnK~Dl~~~----~~~~~~~~~~~~~~~ 137 (276)
+...+.+..+.++|.+++|+|+..+.. ...+ ..++...+ ..++|+++|.||+|+.++ ...+........+++
T Consensus 83 ~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (194)
T 3reg_A 83 EYDRLRPLSYADSDVVLLCFAVNNRTS-FDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC 161 (194)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC
T ss_pred HHHHHhHhhccCCcEEEEEEECCCHHH-HHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC
Confidence 333444557889999999999976522 2222 33333333 347899999999999642 112223344455677
Q ss_pred e-eEEEecCCccchHHHHhhc
Q 023887 138 E-PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 138 ~-~~~~s~~~~~~l~~l~~~l 157 (276)
. ++.+|+.++.+++++...+
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l 182 (194)
T 3reg_A 162 VAYIEASSVAKIGLNEVFEKS 182 (194)
T ss_dssp SCEEECBTTTTBSHHHHHHHH
T ss_pred CEEEEeecCCCCCHHHHHHHH
Confidence 6 8899999999988876654
No 325
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.64 E-value=6.7e-05 Score=61.83 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=22.4
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++|+|.+|||||||+|.|.+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999854
No 326
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.63 E-value=2.7e-05 Score=64.03 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.2
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|||||||+|.|.+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998743
No 327
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.63 E-value=2.9e-05 Score=63.34 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=9.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.|.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
No 328
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.63 E-value=2.2e-05 Score=67.89 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=23.3
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|+.++|.|++|||||||+++|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999999983
No 329
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.63 E-value=2.7e-05 Score=63.23 Aligned_cols=88 Identities=23% Similarity=0.323 Sum_probs=59.2
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHH----HHhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVE----AESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~----a~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
+.+..+.++|.+++|+++..+. +...+..++.. +...++|+++|+||+|+.+.. ..+........++++++.+
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (187)
T 2a9k_A 82 IRDNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVET 160 (187)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEe
Confidence 3445678999999999997653 22223332222 222478999999999996531 1233344556678889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 161 Sa~~~~gi~~l~~~l 175 (187)
T 2a9k_A 161 SAKTRANVDKVFFDL 175 (187)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH
Confidence 999998888876654
No 330
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.62 E-value=0.00024 Score=66.57 Aligned_cols=85 Identities=21% Similarity=0.274 Sum_probs=58.5
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcC-CCEEEEEeCCCCCCHHHHHHHHHHh----hhc---CceeEEEe
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTG-IPLTLALNKVELVDEEVLNTWKSRL----HTW---GYEPLFCS 143 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~-~~~~ivlnK~Dl~~~~~~~~~~~~~----~~~---~~~~~~~s 143 (276)
..++++|.+++|+|+..+.... ...+++..++..+ +|+++|+||+|+.+.+........+ ... +++++.+|
T Consensus 94 ~~~~~~D~~ilVvda~~~~~~~-qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vS 172 (403)
T 3sjy_A 94 SGAALMDGAILVVAANEPFPQP-QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVS 172 (403)
T ss_dssp HHHTTCSEEEEEEETTSCSSCH-HHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECB
T ss_pred HHHhhCCEEEEEEECCCCCCcH-HHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 3578999999999998764343 3344444555445 4889999999999876443333222 222 45789999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++.|...+
T Consensus 173 A~~g~gi~~L~~~l 186 (403)
T 3sjy_A 173 ALHKINIDSLIEGI 186 (403)
T ss_dssp TTTTBSHHHHHHHH
T ss_pred CCCCcChHHHHHHH
Confidence 99999888776654
No 331
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.62 E-value=4.6e-05 Score=60.52 Aligned_cols=88 Identities=22% Similarity=0.297 Sum_probs=58.8
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
+.+....++|.+++|+++..|. +...+..++.... ..++|+++|+||+|+.+.. ..+.........+++++.+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVET 146 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEe
Confidence 3445678999999999997653 2222333322222 2478999999999996531 1223334455667889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 147 Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 147 SAKTRANVDKVFFDL 161 (168)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH
Confidence 999999988876654
No 332
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.61 E-value=1.6e-05 Score=66.26 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999844
No 333
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.61 E-value=7.1e-05 Score=62.83 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.1
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+++++|.+|||||||+|.|.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999743
No 334
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.61 E-value=2.7e-05 Score=70.43 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=34.0
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
+|++++++|++|+||||++..|++.. .+..|++.+.+.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~------------~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY------------KGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH------------HHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH------------HHcCCeEEEecCCc
Confidence 78999999999999999999999843 77778888766554
No 335
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.61 E-value=0.0001 Score=60.42 Aligned_cols=88 Identities=15% Similarity=0.248 Sum_probs=56.6
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHH-HHHHHHHHhhhcCceeEEEe
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~s 143 (276)
+.+..+.++|.+++|+++..+. +...+..++..... .++|+++|+||+|+.+.. ..+........++++++.+|
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 163 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSK-SFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETS 163 (190)
T ss_dssp -----CTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHhhCcCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEe
Confidence 3445678999999999997653 22334444333322 478999999999997522 11222334455678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 164 a~~~~gi~~l~~~l 177 (190)
T 3con_A 164 AKTRQGVEDAFYTL 177 (190)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99988888776654
No 336
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.61 E-value=1.5e-05 Score=67.36 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=22.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
++.+++|+|+||+|||||++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999874
No 337
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.61 E-value=6.2e-05 Score=59.96 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=59.1
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHH-----HHHHHHHHhhhcCcee
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEE-----VLNTWKSRLHTWGYEP 139 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~-----~~~~~~~~~~~~~~~~ 139 (276)
.+.+..+.++|.+++|+|+..|. +...+..++.... ..+.|+++|+||+|+.++. ..+.........++++
T Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~ 145 (170)
T 1ek0_A 67 SLAPXYYRNAQAALVVYDVTKPQ-SFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLF 145 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEE
T ss_pred hhhhhhhccCcEEEEEEecCChH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEE
Confidence 34455678999999999997652 2233444443332 2478899999999996431 1111223334567888
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 146 ~~~Sa~~~~gi~~l~~~l 163 (170)
T 1ek0_A 146 FETSAKTGENVNDVFLGI 163 (170)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHH
Confidence 999999999988877664
No 338
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.61 E-value=0.00011 Score=60.09 Aligned_cols=88 Identities=9% Similarity=0.078 Sum_probs=59.7
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH-hcCCCEEEEEeCCCCCCHH-HHHHHHHHhhhcCceeEEEecCC
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE-STGIPLTLALNKVELVDEE-VLNTWKSRLHTWGYEPLFCSVES 146 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~-~~~~~~~ivlnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~s~~~ 146 (276)
+.+..+.++|.+++|+|+..|. +...+..++.... ..++|+++|+||+|+.+.. ..+.....+...+++++.+|+.+
T Consensus 109 ~~~~~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 187 (208)
T 3clv_A 109 IVPLYYRGATCAIVVFDISNSN-TLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKT 187 (208)
T ss_dssp THHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCC
Confidence 3445678999999999997653 2234445544433 3568999999999943211 12333455566788999999999
Q ss_pred ccchHHHHhhc
Q 023887 147 KLGLDSLLQRL 157 (276)
Q Consensus 147 ~~~l~~l~~~l 157 (276)
+.+++++...+
T Consensus 188 ~~~i~~l~~~l 198 (208)
T 3clv_A 188 GTNIKNIFYML 198 (208)
T ss_dssp CTTHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 98888876654
No 339
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.60 E-value=6.6e-05 Score=61.71 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.4
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.-.++++|.+|||||||+|.+.+.
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999864
No 340
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.60 E-value=6e-05 Score=60.04 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+++++|.+|||||||+|.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 341
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.60 E-value=0.00026 Score=59.63 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=55.7
Q ss_pred hccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH----HHHHHhhh-------cCceeEEE
Q 023887 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN----TWKSRLHT-------WGYEPLFC 142 (276)
Q Consensus 74 ~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~----~~~~~~~~-------~~~~~~~~ 142 (276)
+..+|.+++|+++..+ ++.. -..++......++|+++|+||+|+.+..... .+...+.. .+.+++.+
T Consensus 113 ~~~~d~vi~v~d~~~~-~~~~-~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 190 (223)
T 4dhe_A 113 RPQLCGMILMMDARRP-LTEL-DRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLF 190 (223)
T ss_dssp CTTEEEEEEEEETTSC-CCHH-HHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEE
T ss_pred CcCcCEEEEEEeCCCC-CCHH-HHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEe
Confidence 4458999999999764 3322 2223334456789999999999998865432 22233333 34578999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 191 SA~~g~gv~~l~~~l 205 (223)
T 4dhe_A 191 SALKRTGLDDAHALI 205 (223)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred ecCCCcCHHHHHHHH
Confidence 999999888877654
No 342
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.60 E-value=4.7e-05 Score=61.87 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=57.3
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEeCCCCCCHHHH--------------HHHHH
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL--------------NTWKS 130 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~-r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~--------------~~~~~ 130 (276)
.+.+..+.++|.+++|+|+..+. +...+. .++..... .++|+++|.||+|+.+.... +....
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCcEEEEEEECCChh-hHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence 44455678999999999997642 222332 33333332 38899999999999654221 11222
Q ss_pred HhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 131 RLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 131 ~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.....++ +++.+|+.++.+++++...+
T Consensus 147 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 174 (186)
T 1mh1_A 147 MAKEIGAVKYLECSALTQRGLKTVFDEA 174 (186)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHhcCCcEEEEecCCCccCHHHHHHHH
Confidence 3344566 78888998888888776553
No 343
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.59 E-value=4.1e-05 Score=62.20 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999863
No 344
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.59 E-value=6.7e-05 Score=61.87 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=60.6
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEE
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 141 (276)
..+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+.. ..+.........++.++.
T Consensus 88 ~~~~~~~~~~~d~vi~v~D~~~~~-s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
T 2oil_A 88 RAITSAYYRGAVGALLVFDLTKHQ-TYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLE 166 (193)
T ss_dssp CTTHHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred hhhhHHHhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEE
Confidence 344455688999999999997642 22334455544432 367899999999996531 112223344556788999
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++.+...+
T Consensus 167 ~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 167 TSALDSTNVELAFETV 182 (193)
T ss_dssp ECTTTCTTHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHH
Confidence 9999998888876654
No 345
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.59 E-value=2.7e-05 Score=74.12 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=20.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..++|+|.+|+|||||+|.|.+..
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~ 58 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQN 58 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999999843
No 346
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.58 E-value=4.8e-05 Score=68.85 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.+++++|.+|||||||+|.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999998875
No 347
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.58 E-value=7.8e-05 Score=60.19 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=57.1
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh-----cCCC-EEEEEeCCCCCCHHH--HHHHHHHhhhcCceeE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-----TGIP-LTLALNKVELVDEEV--LNTWKSRLHTWGYEPL 140 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~-----~~~~-~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~ 140 (276)
+.+..+.++|.+++|+|+..|. +...+..++..... .+.| +++|.||+|+.+... .+.........+++++
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 2hxs_A 72 MLDKYIYGAQGVLLVYDITNYQ-SFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSH 150 (178)
T ss_dssp THHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEE
T ss_pred hhhHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEE
Confidence 3445678999999999997653 22233344333322 2667 688999999965211 1222233455678899
Q ss_pred EEecCCccchHHHHhhc
Q 023887 141 FCSVESKLGLDSLLQRL 157 (276)
Q Consensus 141 ~~s~~~~~~l~~l~~~l 157 (276)
.+|+.++.+++++...+
T Consensus 151 ~~Sa~~~~gi~~l~~~l 167 (178)
T 2hxs_A 151 FVSAKTGDSVFLCFQKV 167 (178)
T ss_dssp EECTTTCTTHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHH
Confidence 99999998888876654
No 348
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.58 E-value=6e-05 Score=62.21 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.8
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-.++|+|.+|||||||+|.|.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999999743
No 349
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.58 E-value=3.1e-05 Score=65.18 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=23.1
Q ss_pred ccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 147 KLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 147 ~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
...++++++.+ +++.++|+|+|||||||+.+.|+..
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34678888887 7899999999999999999999853
No 350
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.58 E-value=7.1e-05 Score=62.70 Aligned_cols=88 Identities=13% Similarity=0.181 Sum_probs=59.4
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCc-eeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGY-EPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~-~~~~~ 142 (276)
+.+..+.++|.+++|+|+..+. +...+..++..... .++|+++|.||+|+.+.. ..+.........++ .++.+
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITKRS-SFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIET 172 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTBHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEE
Confidence 3345678999999999987652 22234444433332 568999999999996521 12223344556788 88999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 173 SA~~g~gi~~l~~~l 187 (201)
T 2hup_A 173 SAKDSSNVEEAFLRV 187 (201)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999999888876654
No 351
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.58 E-value=0.00011 Score=58.80 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=57.5
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEec
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSV 144 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~ 144 (276)
+....++|.+++|+++..|. +...+..++..... .++|+++|.||+|+.+.. ..+.........+++.+.+|+
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRR-SFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA 148 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred hhhhccCCEEEEEEECCChH-HHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecC
Confidence 33567899999999997652 22233444333332 378999999999996431 112223344566788999999
Q ss_pred CCccchHHHHhhc
Q 023887 145 ESKLGLDSLLQRL 157 (276)
Q Consensus 145 ~~~~~l~~l~~~l 157 (276)
.++.+++++...+
T Consensus 149 ~~~~~v~~l~~~l 161 (169)
T 3q85_A 149 ALHHNTRELFEGA 161 (169)
T ss_dssp TTTBSHHHHHHHH
T ss_pred ccCCCHHHHHHHH
Confidence 9999988876653
No 352
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.58 E-value=5.9e-05 Score=62.52 Aligned_cols=87 Identities=14% Similarity=0.078 Sum_probs=51.0
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh------cCCCEEEEEeCCCCCC-HHH--HHHHHHHhhhcCceeE
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVD-EEV--LNTWKSRLHTWGYEPL 140 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~------~~~~~~ivlnK~Dl~~-~~~--~~~~~~~~~~~~~~~~ 140 (276)
.+..+.++|.+++|+|+..|. +...+.+++..... .++|+++|+||+|+.+ ... .+........++++++
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 168 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSME-SFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFF 168 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHH-HHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHhhCcEEEEEEECCCHH-HHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEE
Confidence 345678999999999997653 23344555544443 4789999999999976 211 1233344556778899
Q ss_pred EEecCC-ccchHHHHhhc
Q 023887 141 FCSVES-KLGLDSLLQRL 157 (276)
Q Consensus 141 ~~s~~~-~~~l~~l~~~l 157 (276)
.+|+.+ +.+++++...+
T Consensus 169 ~~Sa~~~~~gi~~l~~~i 186 (208)
T 2yc2_C 169 DVSANPPGKDADAPFLSI 186 (208)
T ss_dssp ECCC-------CHHHHHH
T ss_pred EeccCCCCcCHHHHHHHH
Confidence 999988 88877766543
No 353
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.57 E-value=0.00012 Score=60.93 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++++|.+|||||||+|.+.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 4589999999999999999999854
No 354
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.57 E-value=6.6e-05 Score=61.71 Aligned_cols=26 Identities=19% Similarity=0.500 Sum_probs=22.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+.-+++++|.+|||||||+|.|.+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999999743
No 355
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.57 E-value=2.1e-05 Score=64.44 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|+.++|+|+|||||||+.+.|.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5789999999999999999999863
No 356
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.57 E-value=6.5e-05 Score=61.84 Aligned_cols=29 Identities=31% Similarity=0.346 Sum_probs=23.6
Q ss_pred hhccCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 155 QRLRDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 155 ~~l~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..+.....+|+|+||+|||||+.+|.+..
T Consensus 22 ~~~~~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 22 IPFSKGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EECCSSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred EecCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 33433489999999999999999998754
No 357
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.56 E-value=6.7e-05 Score=62.74 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.9
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-+++|+|.+|||||||+|.+.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999874
No 358
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.56 E-value=8.2e-05 Score=60.89 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999998854
No 359
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.56 E-value=6.5e-05 Score=62.11 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++++|.+|||||||+|.+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999743
No 360
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.55 E-value=7e-05 Score=62.76 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.9
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-+++|+|.+|||||||+|.|.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 47999999999999999999874
No 361
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.55 E-value=9.7e-05 Score=61.19 Aligned_cols=88 Identities=22% Similarity=0.297 Sum_probs=59.1
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
+.+..+.++|.+++|+++..+. +...+..++.... ..++|+++|+||+|+.+.. ..+........++++++.+
T Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
T 2bov_A 78 IRDNYFRSGEGFLCVFSITEME-SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVET 156 (206)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEE
Confidence 3345678999999999997653 2223333332222 2378999999999996532 1223334455667889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 157 Sa~~g~gi~~l~~~l 171 (206)
T 2bov_A 157 SAKTRANVDKVFFDL 171 (206)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999998888876654
No 362
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.55 E-value=9.7e-05 Score=62.49 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=20.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|||||||+|.|.+..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 479999999999999999999743
No 363
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.55 E-value=0.00022 Score=57.52 Aligned_cols=87 Identities=9% Similarity=0.101 Sum_probs=54.2
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh-------cCCCEEEEEeCCCCCCHHH---HHHHHHHhh-hcCce
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-------TGIPLTLALNKVELVDEEV---LNTWKSRLH-TWGYE 138 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~-------~~~~~~ivlnK~Dl~~~~~---~~~~~~~~~-~~~~~ 138 (276)
....+.++|.+++|+|+..+. +...+..++..... .++|+++|+||+|+.+... .+....... ..+.+
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~ 153 (182)
T 1ky3_A 75 GVAFYRGADCCVLVYDVTNAS-SFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIP 153 (182)
T ss_dssp --CCSTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCC
T ss_pred hHHHhhcCCEEEEEEECCChH-HHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCe
Confidence 344578999999999997653 22233333322221 5789999999999954321 111122222 23567
Q ss_pred eEEEecCCccchHHHHhhc
Q 023887 139 PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (276)
++.+|+.++.+++++...+
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l 172 (182)
T 1ky3_A 154 LFLTSAKNAINVDTAFEEI 172 (182)
T ss_dssp EEEEBTTTTBSHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 8999999999888876654
No 364
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.55 E-value=5.5e-05 Score=61.06 Aligned_cols=89 Identities=13% Similarity=0.193 Sum_probs=58.7
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHH----HHHhcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLV----EAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~----~a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 141 (276)
.+.+..+.++|.+++|+++..+. +...+..++. .....++|+++|+||+|+.+... .+.........++.++.
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 150 (181)
T 2fn4_A 72 AMREQYMRAGHGFLLVFAINDRQ-SFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFE 150 (181)
T ss_dssp CCHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhhCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEE
Confidence 34445678999999999997642 2223333332 22345789999999999965321 12222333456788999
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 151 ~Sa~~~~gv~~l~~~l 166 (181)
T 2fn4_A 151 ASAKLRLNVDEAFEQL 166 (181)
T ss_dssp CBTTTTBSHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHH
Confidence 9999999888877654
No 365
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.55 E-value=5.1e-05 Score=63.41 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++++|.+|||||||+|.+.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 479999999999999999999743
No 366
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.54 E-value=5e-05 Score=63.93 Aligned_cols=87 Identities=13% Similarity=0.199 Sum_probs=58.3
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEe
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (276)
.+..+.++|.+++|+|+..+. +...+..++..... .++|+++|+||+|+.++.. .+........++++++.+|
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~-s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 179 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQ-SFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS 179 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHH-HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEB
T ss_pred HHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 344678999999999987642 22344445433222 5789999999999965311 1222334455678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++.+...+
T Consensus 180 a~~g~gi~~l~~~l 193 (217)
T 2f7s_A 180 AATGQNVEKAVETL 193 (217)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99988888776554
No 367
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.54 E-value=0.0003 Score=56.64 Aligned_cols=86 Identities=21% Similarity=0.330 Sum_probs=55.3
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCH--HHHHHHHHHhh----hcC--ceeEE
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDE--EVLNTWKSRLH----TWG--YEPLF 141 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~--~~~~~~~~~~~----~~~--~~~~~ 141 (276)
....+.++|.+++|+|+..+.. ...+ +.+......++|+++|+||+|+.+. +........+. .++ ++++.
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~-~~~~-~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVM-PQTV-EAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCK 149 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCC-HHHH-HHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred HHHHHhhCCEEEEEEECCCCCc-HHHH-HHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEE
Confidence 3445789999999999876532 2222 2344445568999999999999763 22222111111 122 46888
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 150 ~Sa~~~~gv~~l~~~l 165 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEMI 165 (178)
T ss_dssp CCSSSSHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHH
Confidence 9999988888776653
No 368
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.54 E-value=0.00032 Score=58.12 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=57.4
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHHHHHHHHHhhh----------
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLHT---------- 134 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~---------- 134 (276)
+.+....++|.+++|+|+..+. +...+..++.... ..++|+++|.||+|+.+....+++.+.+..
T Consensus 83 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 1m2o_B 83 LWKDYFPEVNGIVFLVDAADPE-RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIE 161 (190)
T ss_dssp SGGGGCTTCCEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CC
T ss_pred HHHHHHhcCCEEEEEEECCChH-HHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcccccccccc
Confidence 3344568999999999997653 2333444443332 357899999999999752222223333321
Q ss_pred --cCceeEEEecCCccchHHHHhhc
Q 023887 135 --WGYEPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 135 --~~~~~~~~s~~~~~~l~~l~~~l 157 (276)
.+.+++.+|+.++.+++++...+
T Consensus 162 ~~~~~~~~~~Sa~~g~gi~~l~~~l 186 (190)
T 1m2o_B 162 GQRPVEVFMCSVVMRNGYLEAFQWL 186 (190)
T ss_dssp SSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred ccceEEEEEeECCcCCCHHHHHHHH
Confidence 23467889999999988877654
No 369
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.54 E-value=7.6e-05 Score=62.66 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=59.6
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEeCCCCCCHHHH--------------HH
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL--------------NT 127 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~-r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~--------------~~ 127 (276)
+...+.+..+.++|.+++|+|+..+.. ...+. .++..... .++|+++|.||+|+.+.... +.
T Consensus 90 ~~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 168 (204)
T 4gzl_A 90 DYDRLRPLSYPQTDVFLICFSLVSPAS-FENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 168 (204)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred hhHHHHHHHhccCCEEEEEEECCCHHH-HHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHH
Confidence 334445557889999999999976532 22232 34433343 38999999999999764321 11
Q ss_pred HHHHhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 128 WKSRLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 128 ~~~~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.......+++ +++.+|+.++.+++++...+
T Consensus 169 ~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 199 (204)
T 4gzl_A 169 GLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199 (204)
T ss_dssp HHHHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEeeCCCCCCHHHHHHHH
Confidence 2223344555 58889999998888876654
No 370
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.54 E-value=8.4e-05 Score=61.37 Aligned_cols=87 Identities=11% Similarity=0.200 Sum_probs=58.5
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEec
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSV 144 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~ 144 (276)
.+..+.++|.+++|+|+..+. +...+..++..... .++|+++|.||+|+.+.. ..+........++++++.+|+
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEE-SFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASA 167 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHHHHccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEEC
Confidence 344678999999999997642 22234444444433 578999999999995431 112222334556788999999
Q ss_pred CCccchHHHHhhc
Q 023887 145 ESKLGLDSLLQRL 157 (276)
Q Consensus 145 ~~~~~l~~l~~~l 157 (276)
.++.+++++...+
T Consensus 168 ~~~~gi~~l~~~l 180 (191)
T 3dz8_A 168 KENISVRQAFERL 180 (191)
T ss_dssp TTTBSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9999988876654
No 371
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.54 E-value=3.8e-05 Score=62.35 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|||||||+|.+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999999743
No 372
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.54 E-value=3.4e-05 Score=63.96 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=5.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++|+|.+|||||||+|.|.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999985
No 373
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.54 E-value=7.2e-05 Score=63.46 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=60.5
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh--cCCCEEEEEeCCCCCCH--------------HHHHHH
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES--TGIPLTLALNKVELVDE--------------EVLNTW 128 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~--~~~~~~ivlnK~Dl~~~--------------~~~~~~ 128 (276)
+-..+.+..+.++|.+++|+|+..+......+..++..... .+.|+++|.||+|+.++ ...+..
T Consensus 87 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 166 (214)
T 3q3j_B 87 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQG 166 (214)
T ss_dssp GGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred hHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHH
Confidence 33344555788999999999998653222224455444443 37899999999999642 111122
Q ss_pred HHHhhhcCc-eeEEEecCCccc-hHHHHhhc
Q 023887 129 KSRLHTWGY-EPLFCSVESKLG-LDSLLQRL 157 (276)
Q Consensus 129 ~~~~~~~~~-~~~~~s~~~~~~-l~~l~~~l 157 (276)
......+++ ..+.+|+.++.+ ++++...+
T Consensus 167 ~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l 197 (214)
T 3q3j_B 167 CAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197 (214)
T ss_dssp HHHHHHHTCSEEEECCTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEeccCCCcccHHHHHHHH
Confidence 233455677 788999998887 88776553
No 374
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.53 E-value=0.00015 Score=60.34 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=59.3
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeE
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPL 140 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~ 140 (276)
..+....+.++|.+++|+++..+. +...+..++.... ..++|+++|+||+|+.++.. ..........++++++
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (201)
T 3oes_A 86 SILPYSFIIGVHGYVLVYSVTSLH-SFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFM 164 (201)
T ss_dssp CCCCGGGTTTCCEEEEEEETTCHH-HHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEE
Confidence 344455788999999999997652 2233444443333 24789999999999964321 1122233455678899
Q ss_pred EEecCCccchHHHHhhc
Q 023887 141 FCSVESKLGLDSLLQRL 157 (276)
Q Consensus 141 ~~s~~~~~~l~~l~~~l 157 (276)
.+|+.++.+++++...+
T Consensus 165 ~~Sa~~~~~v~~l~~~l 181 (201)
T 3oes_A 165 ESSARENQLTQGIFTKV 181 (201)
T ss_dssp ECCTTCHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHH
Confidence 99999998888876654
No 375
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.53 E-value=2.9e-05 Score=74.12 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.3
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
++.+++++|++||||||+++.|+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999863
No 376
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.53 E-value=4.4e-05 Score=60.57 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=57.2
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHH----HHHHhcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEe
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFL----VEAESTGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l----~~a~~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s 143 (276)
.+..+.++|.+++|+++..+. +...+..++ ......++|+++|+||+|+.++.. .+.........+++++.+|
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQ-SFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETS 146 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEEC
T ss_pred HHHHhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEec
Confidence 344678999999999997653 222233222 222235789999999999864321 1222333445678899999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 147 a~~~~gi~~l~~~l 160 (167)
T 1kao_A 147 AKSKTMVDELFAEI 160 (167)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHH
Confidence 99998888876654
No 377
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.52 E-value=0.00011 Score=61.00 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-.++++|.+|||||||+|.|.+..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4579999999999999999999743
No 378
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.52 E-value=0.00026 Score=59.53 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=58.3
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH---HhcCCCEEEEEeCCCCCCHHHH--HHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a---~~~~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~ 142 (276)
.+.+....++|.+++|+|+..+. +...+.+++... ...++|+++|+||+|+.+.... +.........+++++.+
T Consensus 76 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (218)
T 4djt_A 76 VLKDVYYIGASGAILFFDVTSRI-TCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEI 154 (218)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEE
T ss_pred hHHHHHhhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEE
Confidence 34445678999999999997652 222333333332 2346899999999999765221 22233445567889999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 155 Sa~~g~gv~~l~~~l 169 (218)
T 4djt_A 155 SAKTAHNFGLPFLHL 169 (218)
T ss_dssp BTTTTBTTTHHHHHH
T ss_pred ecCCCCCHHHHHHHH
Confidence 999999888877654
No 379
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.52 E-value=0.00016 Score=58.85 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=58.3
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH----HhcCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a----~~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+++..+. +...+..++... ...++|+++|+||+|+.+... .+........++++++.+
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 145 (189)
T 4dsu_A 67 AMRDQYMRTGEGFLCVFAINNTK-SFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIET 145 (189)
T ss_dssp TTHHHHHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEE
Confidence 34445678999999999997652 222333333222 235789999999999975321 122223344567788999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 146 Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 146 SAKTRQGVDDAFYTL 160 (189)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999988888776553
No 380
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.52 E-value=8.4e-05 Score=62.35 Aligned_cols=90 Identities=21% Similarity=0.357 Sum_probs=56.2
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEeCCCCCCHHHHHHH--------------H
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAES--TGIPLTLALNKVELVDEEVLNTW--------------K 129 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l-~r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~~~~--------------~ 129 (276)
..+.+..+.++|.+++|+|+..+. +...+ ..++..... .++|+++|+||+|+.+....... .
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 165 (207)
T 2fv8_A 87 DRLRPLSYPDTDVILMCFSVDSPD-SLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGR 165 (207)
T ss_dssp TTTGGGGCTTCCEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHhhcCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHH
Confidence 344455678999999999997652 22233 333333333 38999999999999754322111 1
Q ss_pred HHhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 130 SRLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 130 ~~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.....+++ .++.+|+.++.+++++...+
T Consensus 166 ~~~~~~~~~~~~~~SA~~g~gi~el~~~l 194 (207)
T 2fv8_A 166 AMAVRIQAYDYLECSAKTKEGVREVFETA 194 (207)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHhcCCCEEEEeeCCCCCCHHHHHHHH
Confidence 12223455 67778888888877766553
No 381
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.51 E-value=0.00015 Score=60.11 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=21.3
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.-.++++|.+|||||||+|.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999974
No 382
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.50 E-value=4.6e-05 Score=61.79 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.4
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.-+++++|.+|||||||+|.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
No 383
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.50 E-value=0.00017 Score=59.80 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=57.9
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh-------cCCCEEEEEeCCCCCCHHH-HHHHHHHhh-hcCc
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-------TGIPLTLALNKVELVDEEV-LNTWKSRLH-TWGY 137 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~-------~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~-~~~~ 137 (276)
..+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+... .+....... ..++
T Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (207)
T 1vg8_A 71 QSLGVAFYRGADCCVLVFDVTAPN-TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNI 149 (207)
T ss_dssp SCSCCGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSC
T ss_pred HHhHHHHHhCCcEEEEEEECCCHH-HHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCc
Confidence 344455678999999999997652 22223333322221 4789999999999974321 122222222 3466
Q ss_pred eeEEEecCCccchHHHHhhc
Q 023887 138 EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 138 ~~~~~s~~~~~~l~~l~~~l 157 (276)
+++.+|+.++.+++.+...+
T Consensus 150 ~~~~~Sa~~g~gi~~l~~~l 169 (207)
T 1vg8_A 150 PYFETSAKEAINVEQAFQTI 169 (207)
T ss_dssp CEEECBTTTTBSHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHH
Confidence 88999999999888877664
No 384
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.49 E-value=8.1e-05 Score=63.30 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=57.7
Q ss_pred cccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEE
Q 023887 67 TEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES---TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 67 ~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~---~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 141 (276)
..+.+..+.++|.+++|+|+..+. +...+.+++..... .++|+++|+||+|+.+.. ..+.........++.++.
T Consensus 76 ~~~~~~~~~~~d~vilV~D~~~~~-s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 154 (223)
T 3cpj_B 76 RAITSAYYRGAVGALIVYDISKSS-SYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTE 154 (223)
T ss_dssp TCCCGGGTTTCCEEEEEEC-CCHH-HHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred hhhHHHHhccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 344556788999999999987653 23345555544443 378899999999996431 112222334556778889
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 155 ~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 155 TSALNSENVDKAFEEL 170 (223)
T ss_dssp CCCC-CCCHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHH
Confidence 9999998888876654
No 385
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.49 E-value=4e-05 Score=64.97 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=57.9
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh--cCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecC
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES--TGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~ 145 (276)
.+.+....++|.+++|+|+..+. +...+..++..... .++|+++|.||+|+.+..............++.++.+|+.
T Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (221)
T 3gj0_A 79 GLRDGYYIQAQCAIIMFDVTSRV-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAK 157 (221)
T ss_dssp CCCHHHHTTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGG
T ss_pred HHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCC
Confidence 34445678999999999997642 22233344433332 4789999999999976432222222334457788889988
Q ss_pred CccchHHHHhhc
Q 023887 146 SKLGLDSLLQRL 157 (276)
Q Consensus 146 ~~~~l~~l~~~l 157 (276)
++.+++.+...+
T Consensus 158 ~~~gi~~l~~~l 169 (221)
T 3gj0_A 158 SNYNFEKPFLWL 169 (221)
T ss_dssp GTBTTTHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 888877765544
No 386
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.48 E-value=5.4e-05 Score=63.99 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.6
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++++|.+|||||||+|.|.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999853
No 387
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.48 E-value=8.1e-05 Score=62.22 Aligned_cols=89 Identities=16% Similarity=0.099 Sum_probs=59.7
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..+. +...+..++.... ..++|+++|+||+|+.++.. ..+........++.++.+
T Consensus 89 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 167 (200)
T 2o52_A 89 SVTRSYYRGAAGALLVYDITSRE-TYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLET 167 (200)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEE
Confidence 33445688999999999997653 2223444443333 24789999999999964321 122334445567888999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 168 SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 168 SALTGENVEEAFLKC 182 (200)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999998888776654
No 388
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.47 E-value=0.0001 Score=61.84 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.6
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.-+++++|.+|||||||+|.+.+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999999863
No 389
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.47 E-value=8.6e-05 Score=61.92 Aligned_cols=55 Identities=25% Similarity=0.288 Sum_probs=0.0
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCC---CcEE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSG---GGYL 237 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~---~~~i 237 (276)
+++++|.+|||||||+|.+.+.. ..+.......+ .+.....+..++ ...+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~-----------------------~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~ 60 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVH-----------------------DSMDSDXEVLG----EDTYERTLMVDGESATIIL 60 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-----------------------CCC----GGGC----TTEEEEEEEETTEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCc-----------------------CCcCccccccc----eeEEEEEEEECCeEEEEEE
Q ss_pred EecCC
Q 023887 238 ADTPG 242 (276)
Q Consensus 238 iDtPg 242 (276)
+||+|
T Consensus 61 ~Dt~~ 65 (192)
T 2cjw_A 61 LDMWE 65 (192)
T ss_dssp ECCCC
T ss_pred EEecc
No 390
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.45 E-value=0.0005 Score=57.35 Aligned_cols=88 Identities=15% Similarity=0.213 Sum_probs=56.4
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCC---HHHHHHHHHHhh--------
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVD---EEVLNTWKSRLH-------- 133 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~---~~~~~~~~~~~~-------- 133 (276)
+.+....++|.+++|+|+..+. +...+..++.... ..++|+++|.||+|+.+ .++..++.....
T Consensus 85 ~~~~~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (198)
T 1f6b_A 85 VWKNYLPAINGIVFLVDCADHE-RLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163 (198)
T ss_dssp GGGGGGGGCSEEEEEEETTCGG-GHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCC
T ss_pred HHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCccccccccccc
Confidence 3444677999999999997653 2333444443332 25789999999999964 233322221110
Q ss_pred ------hcCceeEEEecCCccchHHHHhhc
Q 023887 134 ------TWGYEPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 134 ------~~~~~~~~~s~~~~~~l~~l~~~l 157 (276)
..+.+++.+|+.++.+++++...+
T Consensus 164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l 193 (198)
T 1f6b_A 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWM 193 (198)
T ss_dssp CTTTCCSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred ccccccCceEEEEEEECCCCCCHHHHHHHH
Confidence 123467889999999988877654
No 391
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.44 E-value=0.00015 Score=60.21 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=22.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.-+++++|++|||||||+|.+.+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999999874
No 392
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.44 E-value=1.3e-05 Score=73.26 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=41.3
Q ss_pred ecCCccchHHHHhhc-cC-------CEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 143 SVESKLGLDSLLQRL-RD-------QTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 143 s~~~~~~l~~l~~~l-~g-------~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
.+++...++.++..+ .| ..++|+||||+|||||+++|++.... -+.|.+|.+..++.++
T Consensus 27 ~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~--------~~~~~sg~~~~~~~~l 93 (334)
T 1in4_A 27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT--------NIHVTSGPVLVKQGDM 93 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC--------CEEEEETTTCCSHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--------CEEEEechHhcCHHHH
Confidence 345556677777766 33 67999999999999999999985411 1245677766555443
No 393
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.43 E-value=0.00019 Score=64.98 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=59.6
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCC-CHHHHHHHHHHhh-hcC--ceeEEEecCC
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELV-DEEVLNTWKSRLH-TWG--YEPLFCSVES 146 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~-~~~~~~~~~~~~~-~~~--~~~~~~s~~~ 146 (276)
...+.++|.+++|+|+..+ .+......++......++|+++|+||+|+. +.+....+...+. .++ .+++.+|+.+
T Consensus 87 ~~~l~~aD~il~VvD~~~~-~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~ 165 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEG-WRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALK 165 (308)
T ss_dssp HHHHHHCSEEEEEEETTTB-SCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTT
T ss_pred HHHhhcCCEEEEEEeCCCC-CCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 3467899999999999764 333333333444456789999999999998 5544443333333 333 4788999999
Q ss_pred ccchHHHHhhc
Q 023887 147 KLGLDSLLQRL 157 (276)
Q Consensus 147 ~~~l~~l~~~l 157 (276)
+.+++++...+
T Consensus 166 g~gv~~L~~~l 176 (308)
T 3iev_A 166 GANLDELVKTI 176 (308)
T ss_dssp TBSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 88888877654
No 394
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.43 E-value=3.7e-05 Score=70.62 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=31.6
Q ss_pred EecCCccchHHHHhhc-cCC------EEEEEecCCCChhHHHHHHcCCC
Q 023887 142 CSVESKLGLDSLLQRL-RDQ------TTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l-~g~------~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..++....+..+...+ ++. +++|+|+||||||||+++|.+..
T Consensus 68 ~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 68 FYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445556677666665 332 89999999999999999998854
No 395
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.42 E-value=0.0001 Score=58.81 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=56.4
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh-----cCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES-----TGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~-----~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 141 (276)
+.+..+.++|.+++|+++..|.. ...+..++..... .++|+++|+||+|+.+... ..........++++++.
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 145 (172)
T 2erx_A 67 MQRLSISKGHAFILVYSITSRQS-LEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFME 145 (172)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHH-HHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred HHHHhcccCCEEEEEEECcCHHH-HHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEE
Confidence 34456789999999999976521 1222222222221 4789999999999965321 11122333456778899
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 146 ~Sa~~~~gi~~l~~~l 161 (172)
T 2erx_A 146 TSAKLNHNVKELFQEL 161 (172)
T ss_dssp CBTTTTBSHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHH
Confidence 9999999988877664
No 396
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.42 E-value=5.5e-05 Score=69.95 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.3
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.++|+|.+|||||||||+|.+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eeeeeCCCCCCHHHHHHHHHcC
Confidence 5899999999999999999974
No 397
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.42 E-value=0.00012 Score=60.97 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=55.5
Q ss_pred ccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHHH--------HHHHHHHhhhcCce
Q 023887 70 LDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--------LNTWKSRLHTWGYE 138 (276)
Q Consensus 70 ~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~~--------~~~~~~~~~~~~~~ 138 (276)
....+.++|.+++|+|+..+. +...+..++.... ..++|+++|+||+|+.+... .+.........+++
T Consensus 94 ~~~~~~~~d~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~ 172 (199)
T 2p5s_A 94 AKSYFRKADGVLLLYDVTCEK-SFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL 172 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE
T ss_pred HHHHHhhCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe
Confidence 344678999999999987642 2223444443333 24789999999999963211 11112333456778
Q ss_pred eEEEecCCccchHHHHhhc
Q 023887 139 PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (276)
++.+|+.++.+++++...+
T Consensus 173 ~~~~SA~~g~gv~el~~~l 191 (199)
T 2p5s_A 173 FCETSAKDGSNIVEAVLHL 191 (199)
T ss_dssp EEECCTTTCTTHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHH
Confidence 8899999998888776654
No 398
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.54 E-value=2.1e-05 Score=65.77 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=55.5
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhc--CCCEEEEEeCCCCCCHHHH--------------HHHHHH
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST--GIPLTLALNKVELVDEEVL--------------NTWKSR 131 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~--~~~~~ivlnK~Dl~~~~~~--------------~~~~~~ 131 (276)
.+.+..+.++|.+++|+|+..+.......+.++...... ++|+++|.||+|+.+.... +.....
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
Confidence 444456789999999999876532222222333333322 7899999999999764211 111222
Q ss_pred hhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 132 LHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 132 ~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
...+++ +++.+|+.++.+++++...+
T Consensus 173 ~~~~~~~~~~~vSA~~g~gi~~l~~~l 199 (204)
T 3th5_A 173 AKEIGAVKYLECSALTQRGLKTVFDEA 199 (204)
Confidence 334455 67778888888877766554
No 399
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.42 E-value=0.00017 Score=61.71 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.+.+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 479999999999999999999743
No 400
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.42 E-value=0.00011 Score=60.92 Aligned_cols=88 Identities=14% Similarity=0.185 Sum_probs=57.4
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhc-CceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTW-GYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~-~~~~~~~ 142 (276)
+.+..+.++|.+++|+|+..+. +...+.+++.... ..++|+++|+||+|+.+... .+........+ ++.++.+
T Consensus 91 ~~~~~~~~~d~iilV~D~~~~~-s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (192)
T 2il1_A 91 ITSAYYRSAKGIILVYDITKKE-TFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEA 169 (192)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEEC
T ss_pred HHHHHhcCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEE
Confidence 3445678999999999997653 2223444433333 24789999999999965321 11222233333 6788999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 170 SA~~g~gi~~l~~~l 184 (192)
T 2il1_A 170 SAKDNFNVDEIFLKL 184 (192)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999999988877654
No 401
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.41 E-value=0.00015 Score=59.72 Aligned_cols=88 Identities=19% Similarity=0.291 Sum_probs=56.9
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHH---HHHHH--hcCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRF---LVEAE--STGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~---l~~a~--~~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 142 (276)
+.+..+.++|.+++|+++..|. +...+..+ +.... ..++|+++|+||+|+.+.+. .+........++++++.+
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 150 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQ-SLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMET 150 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEEC
T ss_pred HHHHhhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEE
Confidence 3345678999999999997642 11222222 22222 14789999999999975321 122223345567888999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 151 Sa~~~~gi~~l~~~l 165 (199)
T 2gf0_A 151 SAKMNYNVKELFQEL 165 (199)
T ss_dssp BTTTTBSHHHHHHHH
T ss_pred ecCCCCCHHHHHHHH
Confidence 999988888876654
No 402
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.41 E-value=7.5e-05 Score=61.76 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.5
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++|+|.+|||||||+|.+.+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999887643
No 403
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.40 E-value=4.7e-05 Score=61.99 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=22.6
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.++|+|+||||||||.+.|.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999854
No 404
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.40 E-value=0.00099 Score=61.30 Aligned_cols=84 Identities=15% Similarity=0.276 Sum_probs=60.8
Q ss_pred hccccEEEEEEEcCCCC-CCHHHHHHHHHHHHh--cCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccch
Q 023887 74 VANVDHLLLLFSMDQPK-LEPFALTRFLVEAES--TGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGL 150 (276)
Q Consensus 74 ~anvD~vl~v~~~~~p~-~~~~~l~r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 150 (276)
..++|.+++|+|+..+. ++.....+++..... .++|+++|+||+|+.+....+.....+...+.+++.+|+..+.++
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi 323 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGI 323 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTH
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCH
Confidence 34689999999986542 344444444443332 389999999999998876555455555566788999999999999
Q ss_pred HHHHhhc
Q 023887 151 DSLLQRL 157 (276)
Q Consensus 151 ~~l~~~l 157 (276)
+++...+
T Consensus 324 ~~l~~~i 330 (357)
T 2e87_A 324 DLVKEEI 330 (357)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887664
No 405
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.39 E-value=8e-05 Score=74.61 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.3
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.+++|+|++|+|||||++.|++..
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhc
Confidence 57889999999999999999999643
No 406
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.39 E-value=3.4e-05 Score=68.86 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=34.4
Q ss_pred ccchHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 147 KLGLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 147 ~~~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
...++++.+.++.. ++|+|+||+|||||+++|++.. .+ |.+.++|.++
T Consensus 33 ~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~------------~~--~~i~i~g~~l 80 (274)
T 2x8a_A 33 PDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANES------------GL--NFISVKGPEL 80 (274)
T ss_dssp HHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHT------------TC--EEEEEETTTT
T ss_pred HHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHc------------CC--CEEEEEcHHH
Confidence 34456666555322 9999999999999999999965 22 5677766554
No 407
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.39 E-value=0.0001 Score=60.97 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.4
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.-+++++|.+|||||||+|.+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 357999999999999999999874
No 408
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.38 E-value=0.00013 Score=60.17 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.|.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999974
No 409
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.38 E-value=0.00015 Score=60.76 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.8
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-.++++|.+|||||||+|.+.+.
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 410
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.38 E-value=0.00021 Score=60.36 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=53.9
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHH-HHHHHHH--hcCCCEEEEEeCCCCCCHHHHH--------------HHHHHhh
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAE--STGIPLTLALNKVELVDEEVLN--------------TWKSRLH 133 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~-r~l~~a~--~~~~~~~ivlnK~Dl~~~~~~~--------------~~~~~~~ 133 (276)
+..+.++|.+++|+|+..+. +...+. .++.... ..++|+++|.||+|+.+..... +......
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 178 (214)
T 2j1l_A 100 PLFYPDASVLLLCFDVTSPN-SFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMAR 178 (214)
T ss_dssp -----CEEEEEEEEETTCHH-HHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHH
Confidence 34578999999999987652 222232 3433333 2478999999999997643221 1123344
Q ss_pred hcCc-eeEEEecCCccchHHHHhhc
Q 023887 134 TWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 134 ~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.+++ .++.+|+.++.+++++...+
T Consensus 179 ~~~~~~~~~~SA~~g~gi~el~~~l 203 (214)
T 2j1l_A 179 SVGAVAYLECSARLHDNVHAVFQEA 203 (214)
T ss_dssp HTTCSEEEECBTTTTBSHHHHHHHH
T ss_pred hcCCCEEEEecCCCCCCHHHHHHHH
Confidence 5676 78899999888888876654
No 411
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.36 E-value=0.00059 Score=55.61 Aligned_cols=82 Identities=20% Similarity=0.260 Sum_probs=54.1
Q ss_pred hccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH----HHHHHhhhcC-ceeEEEecCCcc
Q 023887 74 VANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN----TWKSRLHTWG-YEPLFCSVESKL 148 (276)
Q Consensus 74 ~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~----~~~~~~~~~~-~~~~~~s~~~~~ 148 (276)
+..+|.+++|+++..+. .... ...+......++|+++|+||+|+.+++..+ .....+...+ ++++.+|+.++.
T Consensus 102 ~~~~~~vi~v~d~~~~~-~~~~-~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 179 (195)
T 3pqc_A 102 RWSLQMVFLLVDGRIPP-QDSD-LMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGE 179 (195)
T ss_dssp CTTEEEEEEEEETTSCC-CHHH-HHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCT
T ss_pred CcCceEEEEEecCCCCC-CHHH-HHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence 34569999999986542 2221 122333355689999999999998654332 2223333333 578999999999
Q ss_pred chHHHHhhc
Q 023887 149 GLDSLLQRL 157 (276)
Q Consensus 149 ~l~~l~~~l 157 (276)
+++++...+
T Consensus 180 gv~~l~~~l 188 (195)
T 3pqc_A 180 GISELLDLI 188 (195)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHHHH
Confidence 988877654
No 412
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.35 E-value=0.00016 Score=60.94 Aligned_cols=89 Identities=18% Similarity=0.164 Sum_probs=58.2
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 142 (276)
.+.+..+.++|.+++|+|+..+. +...+.+++.... ..++|+++|.||+|+.++.. .+.........++.++.+
T Consensus 90 ~~~~~~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (201)
T 2ew1_A 90 SITQSYYRSANALILTYDITCEE-SFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLET 168 (201)
T ss_dssp HHHGGGSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEE
Confidence 33445678999999999987652 2223444444333 24678999999999964311 112223334557788999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 169 Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 169 SAKESDNVEKLFLDL 183 (201)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred eCCCCCCHHHHHHHH
Confidence 999998888776654
No 413
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.35 E-value=0.00035 Score=55.18 Aligned_cols=80 Identities=21% Similarity=0.412 Sum_probs=55.6
Q ss_pred chhccccEEEEEEEcCCCCCCH-HHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCc-eeEEEecCCccc
Q 023887 72 PPVANVDHLLLLFSMDQPKLEP-FALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGY-EPLFCSVESKLG 149 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~-~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 149 (276)
....++|.+++|+++..+.... ..+.+++ +..++|+++|.||+|+.+... ....+.++++ +.+.+|+.++.+
T Consensus 75 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 75 RALEDAEVVLFAVDGRAELTQADYEVAEYL---RRKGKPVILVATKVDDPKHEL---YLGPLYGLGFGDPIPTSSEHARG 148 (161)
T ss_dssp HHTTTCSEEEEEEESSSCCCHHHHHHHHHH---HHHTCCEEEEEECCCSGGGGG---GCGGGGGGSSCSCEECBTTTTBS
T ss_pred HHHHhCCEEEEEEECCCcccHhHHHHHHHH---HhcCCCEEEEEECcccccchH---hHHHHHhCCCCCeEEEecccCCC
Confidence 3568999999999997653221 1233333 446899999999999976521 1123346677 789999999999
Q ss_pred hHHHHhhc
Q 023887 150 LDSLLQRL 157 (276)
Q Consensus 150 l~~l~~~l 157 (276)
++++...+
T Consensus 149 v~~l~~~l 156 (161)
T 2dyk_A 149 LEELLEAI 156 (161)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 88876653
No 414
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.35 E-value=0.00045 Score=57.58 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=57.2
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEecC
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s~~ 145 (276)
....++|.+++|+|+..+. +...+..++..... .++|+++|.||+|+.+.. ..+........++++.+.+|+.
T Consensus 92 ~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~ 170 (195)
T 3cbq_A 92 HCLQTGDAFLIVFSVTDRR-SFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 170 (195)
T ss_dssp HHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred HhhccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCC
Confidence 3467899999999997652 22234455444332 478999999999996531 1122223344567788999999
Q ss_pred CccchHHHHhhc
Q 023887 146 SKLGLDSLLQRL 157 (276)
Q Consensus 146 ~~~~l~~l~~~l 157 (276)
.+.+++++...+
T Consensus 171 ~~~~v~~lf~~l 182 (195)
T 3cbq_A 171 LHHNTRELFEGA 182 (195)
T ss_dssp TTBSHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 999888876653
No 415
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.34 E-value=0.00071 Score=54.61 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=54.3
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHH---HHHHHh---cCCCEEEEEeCCCCC-------CHHHHHHHHHHhhhc-Cce
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRF---LVEAES---TGIPLTLALNKVELV-------DEEVLNTWKSRLHTW-GYE 138 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~---l~~a~~---~~~~~~ivlnK~Dl~-------~~~~~~~~~~~~~~~-~~~ 138 (276)
...++|.+++|+|+..|. +...+..+ +..... .++|+++|.||+|+. +.+..+ ...... +++
T Consensus 69 ~~~~~d~~ilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~---~~~~~~~~~~ 144 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDEN-SFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARAR---ALXADMKRCS 144 (178)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHH---HHHHHHSSEE
T ss_pred HHHhCCEEEEEEECcCHH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHH---HHHHhhcCCe
Confidence 567899999999997653 33345543 333332 478999999999993 222222 223333 568
Q ss_pred eEEEecCCccchHHHHhhc
Q 023887 139 PLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 139 ~~~~s~~~~~~l~~l~~~l 157 (276)
.+.+|+.++.+++++...+
T Consensus 145 ~~~~Sa~~~~~i~~lf~~l 163 (178)
T 2iwr_A 145 YYETXATYGLNVDRVFQEV 163 (178)
T ss_dssp EEEEBTTTTBTHHHHHHHH
T ss_pred EEEEeccccCCHHHHHHHH
Confidence 8999999998888876553
No 416
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.34 E-value=0.00018 Score=58.59 Aligned_cols=88 Identities=17% Similarity=0.118 Sum_probs=58.5
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH---HhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEe
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a---~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s 143 (276)
+.+..+.++|.+++|+|+..+. +...+..++... ...++|+++|.||+|+.++. ...+........+++++.+|
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 153 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITSRE-TYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETS 153 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEec
Confidence 3445678999999999997653 222333443322 23578999999999996431 11223344456678889999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 154 a~~~~gi~~l~~~l 167 (186)
T 2bme_A 154 ALTGENVEEAFVQC 167 (186)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99988888776553
No 417
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.34 E-value=7.8e-05 Score=62.95 Aligned_cols=26 Identities=46% Similarity=0.650 Sum_probs=23.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+|..++|+|+||||||||.+.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 78899999999999999999998643
No 418
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.34 E-value=0.00018 Score=59.53 Aligned_cols=88 Identities=10% Similarity=0.067 Sum_probs=57.6
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH----HhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEE
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA----ESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a----~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 142 (276)
+.+..+.++|.+++|+|+..|. +...+..++... ...++|+++|.||+|+.+.. ..+........++++++.+
T Consensus 91 ~~~~~~~~~d~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 169 (196)
T 2atv_A 91 QREGHMRWGEGFVLVYDITDRG-SFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYEC 169 (196)
T ss_dssp HHHHHHHHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEEC
T ss_pred chhhhhccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEE
Confidence 3445678999999999997653 222233332222 23588999999999996531 1122223344567889999
Q ss_pred ecCCcc-chHHHHhhc
Q 023887 143 SVESKL-GLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~-~l~~l~~~l 157 (276)
|+.++. +++++...+
T Consensus 170 Sa~~g~~gi~~l~~~l 185 (196)
T 2atv_A 170 SACTGEGNITEIFYEL 185 (196)
T ss_dssp CTTTCTTCHHHHHHHH
T ss_pred CCCcCCcCHHHHHHHH
Confidence 999988 888876654
No 419
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.34 E-value=0.00044 Score=55.61 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=56.0
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH---h----cCCCEEEEEeCCCCCCHHH-HHHHHHHhh-hcCcee
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE---S----TGIPLTLALNKVELVDEEV-LNTWKSRLH-TWGYEP 139 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~---~----~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~-~~~~~~ 139 (276)
+......++|.+++|+++..+. +...+..++.... . .++|+++|+||+|+.+.+. .+....... ..+.++
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 150 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQ-SFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPY 150 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCE
T ss_pred hHHHHHhcCCEEEEEEECcCHH-HHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceE
Confidence 3445678999999999997653 2222333332222 1 5789999999999964221 122222223 345688
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 151 ~~~Sa~~~~gi~~l~~~l 168 (177)
T 1wms_A 151 FETSAKDATNVAAAFEEA 168 (177)
T ss_dssp EECCTTTCTTHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHH
Confidence 999999998888776553
No 420
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.32 E-value=0.00063 Score=65.51 Aligned_cols=82 Identities=16% Similarity=0.206 Sum_probs=57.0
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH----HHHHhhhc----CceeEEEec
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT----WKSRLHTW----GYEPLFCSV 144 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~----~~~~~~~~----~~~~~~~s~ 144 (276)
.++++|.+++|+|+..+ ...... +.+..++..++|.++|+||+|+.+++..+. +...+... +++++.+|+
T Consensus 93 ~~~~aD~~ilVvda~~g-~~~qt~-e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA 170 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEG-PKTQTG-EHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 170 (482)
T ss_dssp HTTSCCEEEEEEETTTC-SCHHHH-HHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred HHhhCCEEEEEEecCCC-ccHHHH-HHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEEC
Confidence 57899999999999754 233222 334455677999999999999988654332 22333333 356889999
Q ss_pred CCccchHHHHhh
Q 023887 145 ESKLGLDSLLQR 156 (276)
Q Consensus 145 ~~~~~l~~l~~~ 156 (276)
.++.+++.|...
T Consensus 171 ~~g~gI~~L~~~ 182 (482)
T 1wb1_A 171 KTGFGVDELKNL 182 (482)
T ss_dssp TTCTTHHHHHHH
T ss_pred cCCCCHHHHHHH
Confidence 888888776654
No 421
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.32 E-value=4.1e-05 Score=63.80 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=52.8
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhc---CCCEEEEEeCCCCCCHHHH--HHHHHHhhhcCceeEEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAEST---GIPLTLALNKVELVDEEVL--NTWKSRLHTWGYEPLFC 142 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~---~~~~~ivlnK~Dl~~~~~~--~~~~~~~~~~~~~~~~~ 142 (276)
.+....+.++|.+++|+|+..+. +...+..++...... ++|+++|+||+|+.+.... +........++++++.+
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~v 175 (199)
T 3l0i_B 97 TITSSYYRGAHGIIVVYDVTDQE-SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 175 (199)
T ss_dssp CCSCC--CCCSEEEECC-CCCSH-HHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCC
T ss_pred HHHHHHhhcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEE
Confidence 33445678999999999997653 333455565544432 6899999999999754211 11122334567788888
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 176 SA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 176 SAKNATNVEQSFMTM 190 (199)
T ss_dssp CC---HHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 998888888877664
No 422
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.31 E-value=0.00019 Score=59.21 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=57.1
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh------cCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCceeEEEe
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAES------TGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEPLFCS 143 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~------~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~~~~s 143 (276)
..+.++|.+++|+|+..+. +...+..++..... .++|+++|.||+|+.+.. ..+........+++..+.+|
T Consensus 87 ~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 165 (187)
T 3c5c_A 87 RYLNWAHAFLVVYSVDSRQ-SFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVS 165 (187)
T ss_dssp HHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEe
Confidence 4678999999999997653 22334444443332 588999999999995421 11222334455678889999
Q ss_pred c-CCccchHHHHhhc
Q 023887 144 V-ESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~-~~~~~l~~l~~~l 157 (276)
+ .++.+++++...+
T Consensus 166 a~~~g~gv~~lf~~l 180 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEA 180 (187)
T ss_dssp SSSCSHHHHHHHHHH
T ss_pred ecCccccHHHHHHHH
Confidence 9 7888888776543
No 423
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.31 E-value=0.00075 Score=55.31 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=53.1
Q ss_pred ccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH----HHHHhh-hcCceeEEEecCCccc
Q 023887 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNT----WKSRLH-TWGYEPLFCSVESKLG 149 (276)
Q Consensus 75 anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~----~~~~~~-~~~~~~~~~s~~~~~~ 149 (276)
.++|.+++|+|+..+ .+.... .++......++|+++|+||+|+.++..... +.+.+. ..+.+++.+|+.++.+
T Consensus 104 ~~~~~~i~v~d~~~~-~~~~~~-~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 181 (195)
T 1svi_A 104 EELKAVVQIVDLRHA-PSNDDV-QMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKG 181 (195)
T ss_dssp TTEEEEEEEEETTSC-CCHHHH-HHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTT
T ss_pred hcCCEEEEEEECCCC-CCHHHH-HHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCC
Confidence 455999999998765 332221 122233457899999999999987653332 222232 1245788999999888
Q ss_pred hHHHHhhc
Q 023887 150 LDSLLQRL 157 (276)
Q Consensus 150 l~~l~~~l 157 (276)
++++...+
T Consensus 182 v~~l~~~l 189 (195)
T 1svi_A 182 KDEAWGAI 189 (195)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876653
No 424
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.30 E-value=4e-05 Score=75.30 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=33.0
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccc-cee-eccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKW-FEDQRV 209 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G-~i~-~~g~~~ 209 (276)
+|++++|+|+||||||||+++|++.. .|++| ++. +++..+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L------------~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL------------MEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH------------HTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh------------cccCCceEEEECCcHH
Confidence 68899999999999999999999955 67776 664 776554
No 425
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.29 E-value=0.00035 Score=57.32 Aligned_cols=89 Identities=16% Similarity=0.189 Sum_probs=56.7
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEE
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLF 141 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 141 (276)
.+.+..+.++|.+++|+|+..+.. ...+..++.... ..++|+++|+||+|+.+... .+.........+++++.
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s-~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 163 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMAS-FHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFE 163 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHH-HHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEE
T ss_pred hhhHHHhcCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEE
Confidence 334456789999999999976421 122333332222 35789999999999964311 12222333456778899
Q ss_pred EecCCc---cchHHHHhhc
Q 023887 142 CSVESK---LGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~---~~l~~l~~~l 157 (276)
+|+.++ .+++.+...+
T Consensus 164 ~Sa~~~~~~~~i~~l~~~l 182 (189)
T 1z06_A 164 TSAKNPNDNDHVEAIFMTL 182 (189)
T ss_dssp CCSSSGGGGSCHHHHHHHH
T ss_pred EeCCcCCcccCHHHHHHHH
Confidence 999888 6777666554
No 426
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.29 E-value=0.00049 Score=56.40 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=55.9
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHHHHHHHHHh-----hhcCceeEE
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRL-----HTWGYEPLF 141 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~-----~~~~~~~~~ 141 (276)
+....++|.+++|+|+..+. +...+.+++.... ..++|+++|.||+|+.+....+.+...+ ...+++++.
T Consensus 78 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
T 1fzq_A 78 RSYFENTDILIYVIDSADRK-RFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS 156 (181)
T ss_dssp HHHHTTCSEEEEEEETTCGG-GHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHhCCCCEEEEEEECcCHH-HHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEE
Confidence 34578999999999997653 2333444443321 2578999999999997643222222222 122456788
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 157 ~Sa~~g~gi~~l~~~l 172 (181)
T 1fzq_A 157 CSALTGEGVQDGMNWV 172 (181)
T ss_dssp CCTTTCTTHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHH
Confidence 9999998888877654
No 427
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.29 E-value=0.0012 Score=61.82 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=55.7
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCC-CEEEEEeCCCCCCHHHH----HHHHHHhhh---cCceeEEEec
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEEVL----NTWKSRLHT---WGYEPLFCSV 144 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~-~~~ivlnK~Dl~~~~~~----~~~~~~~~~---~~~~~~~~s~ 144 (276)
.++.+|.+++|+|+..+.......+. +..++..+. |+++++||+|+.+.+.. +++...+.. .+++++.+|+
T Consensus 103 ~~~~~D~~ilVvda~~g~~~~qt~e~-l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA 181 (410)
T 1kk1_A 103 GASLMDGAILVIAANEPCPRPQTREH-LMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISA 181 (410)
T ss_dssp CGGGCSEEEEEEETTSCSSCHHHHHH-HHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBT
T ss_pred hhhhCCEEEEEEECCCCCCChhHHHH-HHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeC
Confidence 46788999999999865334433333 333444454 67888999999886532 233333333 2467899999
Q ss_pred CCccchHHHHhhc
Q 023887 145 ESKLGLDSLLQRL 157 (276)
Q Consensus 145 ~~~~~l~~l~~~l 157 (276)
.++.+++.|...+
T Consensus 182 ~~g~gi~~L~~~l 194 (410)
T 1kk1_A 182 LHGANIDVLVKAI 194 (410)
T ss_dssp TTTBSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9988888776653
No 428
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.29 E-value=6.5e-05 Score=68.06 Aligned_cols=41 Identities=17% Similarity=0.040 Sum_probs=31.6
Q ss_pred ccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 157 LRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 157 l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
.++++++++|++|+||||+++.|++.. .+..+++.+.+.++
T Consensus 96 ~~~~vi~i~G~~G~GKTT~~~~la~~~------------~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 96 KIPYVIMLVGVQGTGKTTTAGKLAYFY------------KKKGFKVGLVGADV 136 (297)
T ss_dssp SSSEEEEEECSSCSSTTHHHHHHHHHH------------HHTTCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH------------HHCCCeEEEEecCC
Confidence 357899999999999999999999743 55566666555443
No 429
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.29 E-value=0.0012 Score=67.06 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.1
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-.++|+|.+++|||||+|+|.|..
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999964
No 430
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.26 E-value=0.0016 Score=55.40 Aligned_cols=85 Identities=11% Similarity=0.071 Sum_probs=55.5
Q ss_pred hhccccEEEEEEEcCCCC-CCHHHHHHHHHHHHhc--CCCEEEEEeCCCCCCHHH-----HHHHHHHhhhcC--ceeEEE
Q 023887 73 PVANVDHLLLLFSMDQPK-LEPFALTRFLVEAEST--GIPLTLALNKVELVDEEV-----LNTWKSRLHTWG--YEPLFC 142 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~-~~~~~l~r~l~~a~~~--~~~~~ivlnK~Dl~~~~~-----~~~~~~~~~~~~--~~~~~~ 142 (276)
....+|.+++|+|+..+. +.......++...... ++|+++|+||+|+.+... .+.........+ .+++.+
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 456789999999997663 3323333444444443 889999999999976421 112222333445 678999
Q ss_pred ecCCccchHHHHhhc
Q 023887 143 SVESKLGLDSLLQRL 157 (276)
Q Consensus 143 s~~~~~~l~~l~~~l 157 (276)
|+.++.+++++...+
T Consensus 185 SA~~g~gi~~l~~~l 199 (228)
T 2qu8_A 185 STLTGVGVEQAKITA 199 (228)
T ss_dssp CTTTCTTHHHHHHHH
T ss_pred ecccCCCHHHHHHHH
Confidence 999998888876654
No 431
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.25 E-value=0.0001 Score=66.73 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=30.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccc-ceeecccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG-SKWFEDQR 208 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G-~i~~~g~~ 208 (276)
+|++++|+|+||+||||+++.|++.. .+.+| ++.+-+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l------------~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS------------MLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH------------HHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH------------HHhcCCEEEEEecC
Confidence 58899999999999999999999843 66667 55544433
No 432
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.25 E-value=0.00017 Score=61.11 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.0
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+.-+++|+|.+|||||||+|.+.+..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998743
No 433
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.25 E-value=0.00052 Score=68.02 Aligned_cols=107 Identities=22% Similarity=0.339 Sum_probs=72.6
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHH---HHHHHHHHhhhcCc---eeEEEecC
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEE---VLNTWKSRLHTWGY---EPLFCSVE 145 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~---~~~~~~~~~~~~~~---~~~~~s~~ 145 (276)
..++.+|.+++|+|+..+. ....... +..+...++|+++|+||+|+.+.. ..+++.. .+++ +++.+|+.
T Consensus 90 ~~l~~aD~aILVVDa~~gv-~~qt~~~-~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~---~lg~~~~~vi~vSAk 164 (599)
T 3cb4_D 90 RSLAACEGALLVVDAGQGV-EAQTLAN-CYTAMEMDLEVVPVLNKIDLPAADPERVAEEIED---IVGIDATDAVRCSAK 164 (599)
T ss_dssp HHHHHCSEEEEEEETTTCC-CTHHHHH-HHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHH---HTCCCCTTCEEECTT
T ss_pred HHHHHCCEEEEEEECCCCC-CHHHHHH-HHHHHHCCCCEEEeeeccCcccccHHHHHHHHHH---HhCCCcceEEEeecc
Confidence 4678999999999997542 2222222 333456799999999999997532 2233332 2354 48999999
Q ss_pred CccchHHHHhhc----c---C-----CEEEEEec---CCCChhHHHHHHcCCC
Q 023887 146 SKLGLDSLLQRL----R---D-----QTTVIVGP---SGVGKSSLINALRSSP 183 (276)
Q Consensus 146 ~~~~l~~l~~~l----~---g-----~~v~lvG~---sGvGKSTLiN~L~g~~ 183 (276)
++.+++.|...+ + + ....+... +++|+.++++.+.|..
T Consensus 165 tg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l 217 (599)
T 3cb4_D 165 TGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTL 217 (599)
T ss_dssp TCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCE
T ss_pred cCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEE
Confidence 999988876653 1 1 12333333 8999999999999976
No 434
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.24 E-value=0.00062 Score=63.88 Aligned_cols=84 Identities=23% Similarity=0.314 Sum_probs=50.9
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCC-CEEEEEeCCCCCCHH----HHHHHHHHhhh---cCceeEEEec
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGI-PLTLALNKVELVDEE----VLNTWKSRLHT---WGYEPLFCSV 144 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~-~~~ivlnK~Dl~~~~----~~~~~~~~~~~---~~~~~~~~s~ 144 (276)
.++++|.+++|+|+..+.......+. +..++..+. |+++++||+|+.+.+ ..+++...+.. .+++++.+|+
T Consensus 101 ~~~~~D~~ilVvda~~g~~~~qt~e~-l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA 179 (408)
T 1s0u_A 101 GASLMDGAILVIAANEPCPQPQTKEH-LMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISA 179 (408)
T ss_dssp TCSCCSEEEEEEETTSCSSCHHHHHH-HHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC--
T ss_pred hHhhCCEEEEEEECCCCCCCchhHHH-HHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeC
Confidence 46789999999999876434443333 334454554 688999999997643 23333444433 2467889999
Q ss_pred CCccchHHHHhhc
Q 023887 145 ESKLGLDSLLQRL 157 (276)
Q Consensus 145 ~~~~~l~~l~~~l 157 (276)
.++.+++.|...+
T Consensus 180 ~~g~gi~~L~~~l 192 (408)
T 1s0u_A 180 HHEANIDVLLKAI 192 (408)
T ss_dssp ----CHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8888888776653
No 435
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.22 E-value=0.00053 Score=62.62 Aligned_cols=86 Identities=15% Similarity=0.043 Sum_probs=56.7
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHHHHHHHHHhh-----hcCceeEE
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEPLF 141 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 141 (276)
+..+.++|.+++|+|+..+.. ...+..++.... ..++|+++|.||+|+.+....+.+...+. ..++.++.
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s-~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 305 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRER-VNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQA 305 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSS-HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEE
T ss_pred HHHhccCCEEEEEEECCchHH-HHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEE
Confidence 345789999999999976533 333333333222 23789999999999976533333333332 12456888
Q ss_pred EecCCccchHHHHhhc
Q 023887 142 CSVESKLGLDSLLQRL 157 (276)
Q Consensus 142 ~s~~~~~~l~~l~~~l 157 (276)
+|+.++.+++++...+
T Consensus 306 vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 306 TCATSGDGLYEGLDWL 321 (329)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EECCCCcCHHHHHHHH
Confidence 9999999988877654
No 436
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.20 E-value=0.0001 Score=67.20 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=33.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
++++++++|+||+||||++..|++. +.+..|++.+.+.++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~------------l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM------------FVDEGKSVVLAAADT 142 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH------------HHHTTCCEEEEEECT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH------------HHhcCCEEEEEcccc
Confidence 5789999999999999999999984 477778887766544
No 437
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.19 E-value=0.00016 Score=67.81 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=29.1
Q ss_pred chHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 149 GLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 149 ~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
.++++++.+ +|+.++|+|+||+|||||+++|.+.
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 466666666 7899999999999999999999973
No 438
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.27 E-value=5.5e-05 Score=63.17 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.-+++++|.+|||||||+|.+.+.
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4457999999999999999999864
No 439
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.18 E-value=0.00088 Score=55.18 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=55.7
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHh----cCCCEEEEEeCCCCCCH----HHHHHHHHHhhhcC-ceeEEEe
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAES----TGIPLTLALNKVELVDE----EVLNTWKSRLHTWG-YEPLFCS 143 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~----~~~~~~ivlnK~Dl~~~----~~~~~~~~~~~~~~-~~~~~~s 143 (276)
...++|.+++|+|+..+. +...+..++..... .+.|+++|.||+|+.+. ...+........++ ...+.+|
T Consensus 82 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 160 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEI-SFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETC 160 (184)
T ss_dssp HHHHCSEEEEEEETTCHH-HHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred eecCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEec
Confidence 567899999999997653 23344455544443 46799999999999421 01112223344555 6789999
Q ss_pred cCCccchHHHHhhc
Q 023887 144 VESKLGLDSLLQRL 157 (276)
Q Consensus 144 ~~~~~~l~~l~~~l 157 (276)
+.++.+++++...+
T Consensus 161 a~~~~gv~~lf~~l 174 (184)
T 3ihw_A 161 ATYGLNVERVFQDV 174 (184)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99999988876653
No 440
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.17 E-value=0.00016 Score=66.82 Aligned_cols=62 Identities=29% Similarity=0.295 Sum_probs=0.0
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEe----------
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLP---------- 230 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~---------- 230 (276)
+++|+|++|||||||+|.|....... |.++.-+...++ .+...+.+.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~-------------------g~kV~vi~~Dp~----~~~~~g~~l~d~~~~~~~~ 137 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIER-------------------GHRVAVLAVDPS----STRTGGSILGDKTRMARLA 137 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT-------------------TCCEEEEEEC--------------------CHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC-------------------CCceEEEecCCC----CCcccchhccchhhHHhhc
Q ss_pred --------------------------------cCCCcEEEecCCCCC
Q 023887 231 --------------------------------LSGGGYLADTPGFNQ 245 (276)
Q Consensus 231 --------------------------------~~~~~~iiDtPg~~~ 245 (276)
......|+||||++.
T Consensus 138 ~~~~~~i~~~~~~~~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~ 184 (355)
T 3p32_A 138 VHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQ 184 (355)
T ss_dssp TCTTEEEECCC--CCHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSS
T ss_pred cCCCeeEEECCCCccccchhHHHHHHHHHHhhCCCCEEEEeCCCCCc
No 441
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.17 E-value=0.00018 Score=60.50 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.9
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.+++|+|+||+|||||.+.|.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999999864
No 442
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.16 E-value=0.00029 Score=66.09 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
..++++|++|+|||||+|.|.|..
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~ 34 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVW 34 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 478999999999999999999853
No 443
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.15 E-value=8.1e-05 Score=64.74 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=33.4
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
..++++++.+ +| ++|+|+||+|||||+++|.+.. ..|.+.+++.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~--------------~~~~i~~~~~~~ 85 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA--------------RVPFITASGSDF 85 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT--------------TCCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh--------------CCCEEEeeHHHH
Confidence 3455555555 34 9999999999999999999854 256677666554
No 444
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.14 E-value=0.00041 Score=63.32 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.4
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
-+++|+|.+|||||||+|.|.+..
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~ 189 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGE 189 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSC
T ss_pred ceEEEECCCCccHHHHHHHHhCCC
Confidence 479999999999999999998743
No 445
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.11 E-value=0.00019 Score=60.96 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=28.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceee
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWF 204 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~ 204 (276)
+.+++|+|+|||||||+.+.|.+... +..++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g---------~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ---------WHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT---------CEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---------CCcccCcceee
Confidence 46899999999999999999987431 22566676654
No 446
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.08 E-value=0.0035 Score=56.40 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=57.6
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHH-HHHHhcCCCEEEEEeCCCCCC-HHHHHHHHHHhh-hcCc-eeEEEecCC
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFL-VEAESTGIPLTLALNKVELVD-EEVLNTWKSRLH-TWGY-EPLFCSVES 146 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l-~~a~~~~~~~~ivlnK~Dl~~-~~~~~~~~~~~~-~~~~-~~~~~s~~~ 146 (276)
+..+..+|.+++|+++.. ++.. ++.+ ..+...++|.++++||+|+.. .+........+. .+++ .++.+|+.+
T Consensus 83 ~~~l~~~D~vl~Vvd~~~--~~~~--~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR--WTPD--DEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp TSCCCCEEEEEEEEETTC--CCHH--HHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHHHhcCCEEEEEEeCCC--CCHH--HHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 456789999999999864 5533 2232 233456899999999999987 444444444443 3566 678889888
Q ss_pred ccchHHHHhhc
Q 023887 147 KLGLDSLLQRL 157 (276)
Q Consensus 147 ~~~l~~l~~~l 157 (276)
+.+++.+...+
T Consensus 159 g~~v~~l~~~i 169 (301)
T 1ega_A 159 GLNVDTIAAIV 169 (301)
T ss_dssp TTTHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 88888877664
No 447
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.07 E-value=0.0005 Score=61.34 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=56.4
Q ss_pred ccccchhccccEEEEEEEcCCCCCCHHHHH-HHHHHHHh--cCCCEEEEEeCCCCCCHHHH--------------HHHHH
Q 023887 68 EILDPPVANVDHLLLLFSMDQPKLEPFALT-RFLVEAES--TGIPLTLALNKVELVDEEVL--------------NTWKS 130 (276)
Q Consensus 68 ~~~r~~~anvD~vl~v~~~~~p~~~~~~l~-r~l~~a~~--~~~~~~ivlnK~Dl~~~~~~--------------~~~~~ 130 (276)
.+.+..+.++|.+++|+|+..+.. ...+. .++..... .++|+++|.||+|+.+.... +....
T Consensus 218 ~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 296 (332)
T 2wkq_A 218 RLRPLSYPQTDVFLICFSLVSPAS-FHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 296 (332)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHH-HHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHHhccCCCEEEEEEeCCCHHH-HHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHH
Confidence 344456789999999999976532 22222 23323232 38899999999999653211 11222
Q ss_pred HhhhcCc-eeEEEecCCccchHHHHhhc
Q 023887 131 RLHTWGY-EPLFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 131 ~~~~~~~-~~~~~s~~~~~~l~~l~~~l 157 (276)
.....++ +++.+|+.++.+++++...+
T Consensus 297 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 324 (332)
T 2wkq_A 297 MAKEIGAVKYLECSALTQRGLKTVFDEA 324 (332)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHcCCcEEEEecCCCCcCHHHHHHHH
Confidence 3344566 78889998888888776553
No 448
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.07 E-value=0.00048 Score=65.53 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
...++++|++|+|||||+|.|++.
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 449
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.07 E-value=0.00021 Score=69.81 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=0.0
Q ss_pred EEEEEecCCCChhHHHHHHc------------------CCCCCCccccccCcccccccceeeccccccccccccCCCCce
Q 023887 161 TTVIVGPSGVGKSSLINALR------------------SSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHT 222 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~------------------g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~t 222 (276)
.++|+|++|||||||+|.|+ +.. -.+........| .
T Consensus 15 ~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~----------------------~~d~~~~e~~~G----i 68 (528)
T 3tr5_A 15 TFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHA----------------------TSDWMELEKQRG----I 68 (528)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CC----------------------HHHHHHHHHHHC----C
T ss_pred EEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccce----------------------ecccchhhhcCC----e
Q ss_pred eeeEEEEecCCCc---EEEecCCCCCCC
Q 023887 223 TRHVSLLPLSGGG---YLADTPGFNQPS 247 (276)
Q Consensus 223 t~~~~~~~~~~~~---~iiDtPg~~~~~ 247 (276)
|..........+. .|+||||...+.
T Consensus 69 Ti~~~~~~~~~~~~~i~liDTPG~~df~ 96 (528)
T 3tr5_A 69 SVTTSVMQFPYKDYLINLLDTPGHADFT 96 (528)
T ss_dssp SSSSSEEEEEETTEEEEEECCCCSTTCC
T ss_pred eEEEeEEEEEeCCEEEEEEECCCchhHH
No 450
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.05 E-value=0.00012 Score=64.87 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=33.7
Q ss_pred cchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccc
Q 023887 148 LGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRV 209 (276)
Q Consensus 148 ~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~ 209 (276)
..++++++.+ +| ++|+|+||+|||||+++|.+.. ..|.+.+++.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~--------------~~~~i~~~~~~~ 109 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA--------------RVPFITASGSDF 109 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT--------------TCCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc--------------CCCEEEecHHHH
Confidence 3455555555 34 8999999999999999999854 256777766554
No 451
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.04 E-value=0.00033 Score=65.63 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.3
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-+++++|++|+|||||+|+|.+..
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcc
Confidence 3579999999999999999999853
No 452
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.01 E-value=0.00097 Score=64.74 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.0
Q ss_pred CCEEEEEecCCCChhHHHHHHc
Q 023887 159 DQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
..+++|+|++||||||+++.|+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999999
No 453
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=97.00 E-value=0.0013 Score=53.23 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=50.0
Q ss_pred eeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeecccCCeeEEeeeccc
Q 023887 2 RVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWVDRRGMIENVFQR 65 (276)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~~~~~i~~i~~R 65 (276)
-+.|.++-++.. .|.-+ +|..++|.++|+|++ ...+..||+|.+++.+++..+|-|...+.+
T Consensus 34 ~g~V~e~lgn~~f~V~l~-nG~~~La~I~GKmRk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~ 96 (143)
T 1d7q_A 34 YAQVIKMLGNGRLEAMCF-DGVKRLCHIRGKLRK-KVWINTSDIILVGLRDYQDNKADVILKYNA 96 (143)
T ss_dssp EEEEEEECSSSEEEEEET-TTEEEEEECCSGGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECT
T ss_pred EEEEEEEcCCCEEEEEeC-CCCEEEEEeccccee-eEEecCCCEEEEeeccCCCCeEEEEEEeCH
Confidence 467888855555 66544 799999999999997 889999999999988776677888877654
No 454
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.00033 Score=69.56 Aligned_cols=53 Identities=26% Similarity=0.371 Sum_probs=0.0
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccc-------------------------
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTK------------------------- 215 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~------------------------- 215 (276)
.++++|++|+|||||+|.|++.. ..+...
T Consensus 169 kV~ivG~~n~GKSTLin~Ll~~~--------------------------~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~ 222 (611)
T 3izq_1 169 SFVVLGHVDAGKSTLMGRLLYDL--------------------------NIVNQSQLRKLQRESETMGKSSFKFAWIMDQ 222 (611)
T ss_dssp EEEEECCSSSCHHHHHHHHHSCS--------------------------SCSCCHHHHHHHHHSSCSSSSCCSSSHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhc--------------------------CCccHHHHHHHHhhhhhccccccceeeeecc
Q ss_pred ------cCCCCceeeeEEEEecCCCc---EEEecCCC
Q 023887 216 ------SGRGKHTTRHVSLLPLSGGG---YLADTPGF 243 (276)
Q Consensus 216 ------~g~gk~tt~~~~~~~~~~~~---~iiDtPg~ 243 (276)
.| +|.......+.... .++||||.
T Consensus 223 ~~~e~~~G----iTid~~~~~~~~~~~~~~iiDTPG~ 255 (611)
T 3izq_1 223 TNEERERG----VTVSICTSHFSTHRANFTIVDAPGH 255 (611)
T ss_dssp HHHHHHTT----TCCSCSCCEEECSSCEEEEEECCSS
T ss_pred chhhhhCC----eeEeeeeEEEecCCceEEEEECCCC
No 455
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.00 E-value=0.00018 Score=70.45 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.7
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-+++++|++|+|||||+|.|.+.
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~ 27 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKT 27 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999873
No 456
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=96.99 E-value=0.00049 Score=52.79 Aligned_cols=62 Identities=21% Similarity=0.120 Sum_probs=49.4
Q ss_pred eeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeeccc-CCeeEEeeeccc
Q 023887 2 RVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWV-DRRGMIENVFQR 65 (276)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~-~~~~~i~~i~~R 65 (276)
-+.|.++-++.. .|.-+ +|..+.|.++|+|++ +..+..||+|.+++.+++ ..+|-|...+.+
T Consensus 23 ~g~V~~~lgn~~~~V~l~-nG~~~la~i~GKmRk-~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~ 86 (102)
T 1jt8_A 23 LGIIEQMLGASRVRVRCL-DGKTRLGRIPGRLKN-RIWVREGDVVIVKPWEVQGDQKCDIIWRYTK 86 (102)
T ss_dssp EEEEECSSCSSEEEEEEE-TTEEEEEECCHHHHH-HHCCCSCEEEEECCBCCTTSEEEEEEEESSC
T ss_pred EEEEEEEcCCCEEEEEEC-CCCEEEEEEccccee-eEEecCCCEEEEEeccCCCCceEEEEEEeCH
Confidence 467888855555 66444 799999999999997 888999999999998776 567888877654
No 457
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.98 E-value=0.0017 Score=58.68 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=55.3
Q ss_pred cchhccccEEEEEEEcCCCCCCHHHHHHHH-HHHHhc--CCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCc-eeEEEecC
Q 023887 71 DPPVANVDHLLLLFSMDQPKLEPFALTRFL-VEAEST--GIPLTLALNKVELVDEEV-LNTWKSRLHTWGY-EPLFCSVE 145 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~~~~l~r~l-~~a~~~--~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~-~~~~~s~~ 145 (276)
+..+.++|.+++|+|+..+ ++.. ++++ ...+.. ++|.++|+||+|+.+... .......+ .++ +++.+|+.
T Consensus 81 ~~~l~~ad~il~VvD~~~~-~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~iSA~ 155 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHP-PTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRMLSAL 155 (301)
T ss_dssp HHHTSSCSEEEEEEETTSC-CCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEECCTT
T ss_pred HHHHhcCCEEEEEEECCCC-CChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEEeCC
Confidence 3467899999999999765 3322 3333 233444 899999999999986544 33333333 333 67888988
Q ss_pred CccchHHHHhhc
Q 023887 146 SKLGLDSLLQRL 157 (276)
Q Consensus 146 ~~~~l~~l~~~l 157 (276)
++.+++.+...+
T Consensus 156 ~g~gv~~l~~~l 167 (301)
T 1wf3_A 156 DERQVAELKADL 167 (301)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 888888777665
No 458
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.98 E-value=0.0027 Score=52.52 Aligned_cols=85 Identities=9% Similarity=0.113 Sum_probs=55.6
Q ss_pred cchhccccEEEEEEEcCCCCCC-HHHHHHHHHHH--HhcCCCEEEEEeCCCCCCHHHH----HHH----HHHh-h----h
Q 023887 71 DPPVANVDHLLLLFSMDQPKLE-PFALTRFLVEA--ESTGIPLTLALNKVELVDEEVL----NTW----KSRL-H----T 134 (276)
Q Consensus 71 r~~~anvD~vl~v~~~~~p~~~-~~~l~r~l~~a--~~~~~~~~ivlnK~Dl~~~~~~----~~~----~~~~-~----~ 134 (276)
+....++|.+++|+|+..+... ...+.+++... ...+.|+++|.||+||.+++.. ..+ ...+ . .
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 4567899999999999765211 22444555444 2457899999999999874321 111 1112 2 3
Q ss_pred cCceeEEEecCCccchHHHHhh
Q 023887 135 WGYEPLFCSVESKLGLDSLLQR 156 (276)
Q Consensus 135 ~~~~~~~~s~~~~~~l~~l~~~ 156 (276)
.+...+.+|+.+ .+++++-..
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~ 190 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSK 190 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHH
T ss_pred CCcceEEEEech-hhHHHHHHH
Confidence 566788999998 888876654
No 459
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.98 E-value=0.0018 Score=50.37 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=48.2
Q ss_pred eeEEEecCCCCc-eeccCCCCcEEEEEEcccccccCCCceeCcEEEEeeeccc-CCeeEEeeeccc
Q 023887 2 RVIVQQSEPSRT-SDCNDKTGVELLCVVRALLKKIKRRVLVGDKVVVGSIDWV-DRRGMIENVFQR 65 (276)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~-~~~~~i~~i~~R 65 (276)
-+.|.++-++.. .|.-+ +|..+.|.++|+|++ ...+..||+|.+++.+.+ ...|.|...+..
T Consensus 18 ~g~V~~~lgn~~f~V~l~-nG~~~la~i~GK~Rk-~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~ 81 (111)
T 2dgy_A 18 IVRVLRTPGNNLHEVETA-QGQRFLVSMPSKYRK-NIWIKRGDFLIVDPIEEGEKVKAEISFVLCK 81 (111)
T ss_dssp EEEEEECCSSSEEEEECT-TSCEEEEECCTTCCS-CCCCCSSCEEEEEECSSCSSCCEEEEEECCH
T ss_pred EEEEEEeCCCCEEEEEeC-CCCEEEEEechhhcc-cEEEcCCCEEEEEecccCCcceEEEEEEeCH
Confidence 467888855555 66444 889999999999996 888999999999987655 456777776554
No 460
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.96 E-value=0.00051 Score=64.48 Aligned_cols=25 Identities=32% Similarity=0.330 Sum_probs=22.0
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
...++++|+.++|||||+|.|.|..
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~ 32 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVW 32 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3478999999999999999999753
No 461
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.96 E-value=0.00043 Score=68.35 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=33.9
Q ss_pred cCCccchHHHHhhc-cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 144 VESKLGLDSLLQRL-RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 144 ~~~~~~l~~l~~~l-~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+++...++.++..+ .|..++|+|+||+|||||+++|.+..
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 34555677788776 78999999999999999999999965
No 462
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.95 E-value=0.00037 Score=58.45 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEecCCCChhHHHHHHcC
Q 023887 161 TTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g 181 (276)
+++|+|++||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 463
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.95 E-value=0.00074 Score=55.20 Aligned_cols=87 Identities=14% Similarity=0.193 Sum_probs=53.8
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHH-HHHHHHHH--hcCCCEEEEEeCCCCCCHHH--------------HHHHHHH
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAE--STGIPLTLALNKVELVDEEV--------------LNTWKSR 131 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l-~r~l~~a~--~~~~~~~ivlnK~Dl~~~~~--------------~~~~~~~ 131 (276)
+.+....++|.+++|+|+..+. +...+ ..++.... ..+.|+++|.||+|+.++.. .+.....
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 149 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPE-TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 149 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred hHHhhcCCCcEEEEEEECCCHH-HHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence 3344678999999999997653 22223 33333332 24789999999999964210 1112223
Q ss_pred hhhcC-ceeEEEecC-CccchHHHHhh
Q 023887 132 LHTWG-YEPLFCSVE-SKLGLDSLLQR 156 (276)
Q Consensus 132 ~~~~~-~~~~~~s~~-~~~~l~~l~~~ 156 (276)
...++ ...+.+|+. ++.+++++...
T Consensus 150 ~~~~~~~~~~e~Sa~~~~~gi~~l~~~ 176 (184)
T 1m7b_A 150 AKQIGAATYIECSALQSENSVRDIFHV 176 (184)
T ss_dssp HHHHTCSEEEECBTTTBHHHHHHHHHH
T ss_pred HHHcCCcEEEEeeecCCCcCHHHHHHH
Confidence 33455 578889987 57778776654
No 464
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.94 E-value=0.00037 Score=57.22 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+|+.++|+|++||||||+.+.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999873
No 465
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.94 E-value=0.0022 Score=61.33 Aligned_cols=88 Identities=14% Similarity=0.031 Sum_probs=56.9
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHHHHHHHHHhh-----hcCcee
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEVLNTWKSRLH-----TWGYEP 139 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~-----~~~~~~ 139 (276)
+.+..+.++|.+++|+|+..+. +...+..++.... ..++|+++|+||+|+.+....+.....+. ..++.+
T Consensus 382 ~~~~~~~~ad~~i~V~D~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (497)
T 3lvq_E 382 LWRHYYTGTQGLIFVVDCADRD-RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV 460 (497)
T ss_dssp GGGGGGTTCCEEEEEEETTCGG-GHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEE
T ss_pred HHHHHhccCCEEEEEEECcchh-HHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEE
Confidence 3445688999999999997653 2333444443332 24789999999999965422222222221 123458
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++...+
T Consensus 461 ~~~SA~~g~gi~~l~~~l 478 (497)
T 3lvq_E 461 QPSCATSGDGLYEGLTWL 478 (497)
T ss_dssp EECBTTTTBTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 889999999988877654
No 466
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.93 E-value=0.0019 Score=61.02 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=53.0
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCC-EEEEEeCCCCCC--HHHH----HHHHHHhhhcC-----ceeE
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVD--EEVL----NTWKSRLHTWG-----YEPL 140 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~-~~ivlnK~Dl~~--~~~~----~~~~~~~~~~~-----~~~~ 140 (276)
.++++|.+++|+|+..+. .. ...+++..+...+.+ +++|+||+|+.+ ++.. +++...+..++ ++++
T Consensus 124 ~~~~aD~~ilVvDa~~g~-~~-qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i 201 (434)
T 1zun_B 124 GASTCDLAIILVDARYGV-QT-QTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFV 201 (434)
T ss_dssp HHTTCSEEEEEEETTTCS-CH-HHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEE
T ss_pred HHhhCCEEEEEEECCCCC-cH-HHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEE
Confidence 578999999999997653 22 334445555666775 788999999986 3322 23344455667 5678
Q ss_pred EEecCCccchHH
Q 023887 141 FCSVESKLGLDS 152 (276)
Q Consensus 141 ~~s~~~~~~l~~ 152 (276)
.+|+.++.++++
T Consensus 202 ~vSA~~g~gi~~ 213 (434)
T 1zun_B 202 PMSALKGDNVVN 213 (434)
T ss_dssp ECCTTTCTTTSS
T ss_pred EEeccCCCCccc
Confidence 889887776654
No 467
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.92 E-value=0.00034 Score=66.50 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=58.2
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHhhhcCceeEEEecCCccchH
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLNTWKSRLHTWGYEPLFCSVESKLGLD 151 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ 151 (276)
..+.++|.+++|+|+ .+ . ....+++..+...++|+++|+||+|+.+....+........++++++.+|+.++.+++
T Consensus 109 ~~l~~aD~vllVvD~-~~--~-~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~ 184 (423)
T 3qq5_A 109 RVFYRADCGILVTDS-AP--T-PYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFD 184 (423)
T ss_dssp HHHTSCSEEEEECSS-SC--C-HHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTT
T ss_pred HHHhcCCEEEEEEeC-CC--h-HHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHH
Confidence 367889999999998 22 2 2445566666777999999999999976543322223334567788999999888877
Q ss_pred HHHhhc
Q 023887 152 SLLQRL 157 (276)
Q Consensus 152 ~l~~~l 157 (276)
++...+
T Consensus 185 eL~~~L 190 (423)
T 3qq5_A 185 DIGKTI 190 (423)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 766553
No 468
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.92 E-value=0.00079 Score=64.42 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=21.5
Q ss_pred CEEEEEecCCCChhHHHHHHcCCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.+++|+|.+|||||||+|.|.+..
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~ 346 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQ 346 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999743
No 469
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.91 E-value=0.00036 Score=58.34 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.4
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
.+++|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 470
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.91 E-value=0.0019 Score=55.44 Aligned_cols=92 Identities=11% Similarity=0.221 Sum_probs=60.2
Q ss_pred cccccccchhccccEEEEEEEcCCCCCCHHHHHHHHHHH---HhcCCCEEEEEeCCCCCCHH--HHHHHHHHhhhcCcee
Q 023887 65 RSTEILDPPVANVDHLLLLFSMDQPKLEPFALTRFLVEA---ESTGIPLTLALNKVELVDEE--VLNTWKSRLHTWGYEP 139 (276)
Q Consensus 65 R~~~~~r~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a---~~~~~~~~ivlnK~Dl~~~~--~~~~~~~~~~~~~~~~ 139 (276)
|-..+.+....++|.+++|+|+..+. +...+.+++... ...+.|++||.||+||.+.. ..++......+++...
T Consensus 74 ~~~~l~~~~~~~a~~~ilv~di~~~~-Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~ 152 (216)
T 4dkx_A 74 RFRSLIPSYIRDSAAAVVVYDITNVN-SFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMF 152 (216)
T ss_dssp TCGGGHHHHHTTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEE
T ss_pred hhhhHHHHHhccccEEEEEeecchhH-HHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCee
Confidence 33334444678999999999997652 222344443333 34577899999999996531 1122233445667888
Q ss_pred EEEecCCccchHHHHhhc
Q 023887 140 LFCSVESKLGLDSLLQRL 157 (276)
Q Consensus 140 ~~~s~~~~~~l~~l~~~l 157 (276)
+.+|+.++.+++++-..+
T Consensus 153 ~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 153 IETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp EEEBTTTTBSHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHHHH
Confidence 899999999988876654
No 471
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.91 E-value=0.00016 Score=61.34 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=30.7
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCccccccc--ceeecccc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILG--SKWFEDQR 208 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G--~i~~~g~~ 208 (276)
+|..++|+|++|+||||+.+.|.+.. .|..| .+.+++..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l------------~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL------------VRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH------------HHHHCCCEEEECHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh------------ccccCCcEEEECChH
Confidence 68899999999999999999998743 45556 55665443
No 472
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.89 E-value=0.00062 Score=63.42 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=0.0
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCCCCceeeeEEEEecCCCc---EE
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVSLLPLSGGG---YL 237 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~~~~~~~~~---~i 237 (276)
.++++|++++|||||+|.|.... .|..+.+....... .+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~g--------------------------------------iTi~~~~~~~~~~~~~i~i 64 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKG--------------------------------------TSSDITMYNNDKEGRNMVF 64 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEE--------------------------------------EESSSEEEEECSSSSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--------------------------------------EEEEeeEEEEecCCeEEEE
Q ss_pred EecCCCCCC
Q 023887 238 ADTPGFNQP 246 (276)
Q Consensus 238 iDtPg~~~~ 246 (276)
+||||...+
T Consensus 65 iDtPGh~~f 73 (370)
T 2elf_A 65 VDAHSYPKT 73 (370)
T ss_dssp EECTTTTTC
T ss_pred EECCChHHH
No 473
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.87 E-value=0.00037 Score=66.96 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
+.-.++++|.+|+|||||+|.|++.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999864
No 474
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.87 E-value=0.0031 Score=59.87 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=54.4
Q ss_pred hhccccEEEEEEEcCCCCCC-----HHHHHHHHHHHHhcCCC-EEEEEeCCCCCCH----HHH----HHHHHHhhhcCc-
Q 023887 73 PVANVDHLLLLFSMDQPKLE-----PFALTRFLVEAESTGIP-LTLALNKVELVDE----EVL----NTWKSRLHTWGY- 137 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~-----~~~l~r~l~~a~~~~~~-~~ivlnK~Dl~~~----~~~----~~~~~~~~~~~~- 137 (276)
.++++|.+++|+|+..+.+. ..+..+.+..+...++| +++++||+|+.+. +.. +++...+.++++
T Consensus 115 ~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~ 194 (439)
T 3j2k_7 115 GASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFN 194 (439)
T ss_pred hHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhccc
Confidence 47889999999999765331 01333445556677888 8899999999642 112 222333445554
Q ss_pred -----eeEEEecCCccchHHHHh
Q 023887 138 -----EPLFCSVESKLGLDSLLQ 155 (276)
Q Consensus 138 -----~~~~~s~~~~~~l~~l~~ 155 (276)
+++.+|+.++.++.++..
T Consensus 195 ~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 195 PKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccCCeeEEEeeccCCcccccccc
Confidence 478899988888776443
No 475
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.87 E-value=0.0013 Score=63.05 Aligned_cols=81 Identities=22% Similarity=0.218 Sum_probs=50.8
Q ss_pred chhccccEEEEEEEcCCCCCC-----HHHHHHHHHHHHhcCC-CEEEEEeCCCCCC--HHHHHH----HHHHhhhcCc--
Q 023887 72 PPVANVDHLLLLFSMDQPKLE-----PFALTRFLVEAESTGI-PLTLALNKVELVD--EEVLNT----WKSRLHTWGY-- 137 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~-----~~~l~r~l~~a~~~~~-~~~ivlnK~Dl~~--~~~~~~----~~~~~~~~~~-- 137 (276)
..++++|.+++|+|+..+.+. .....+.+..+...+. ++++|+||+|+.+ ++..+. +...+..+++
T Consensus 130 ~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~ 209 (483)
T 3p26_A 130 MGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFE 209 (483)
T ss_dssp HHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCG
T ss_pred HhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCc
Confidence 357899999999999765332 1234445555666675 5888999999986 332222 2233334443
Q ss_pred ---eeEEEecCCccchHH
Q 023887 138 ---EPLFCSVESKLGLDS 152 (276)
Q Consensus 138 ---~~~~~s~~~~~~l~~ 152 (276)
+++.+|+.++.++++
T Consensus 210 ~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 210 DNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GGEEEEECCSSSCTTSSS
T ss_pred ccceEEEEeeecCCCccc
Confidence 568888887776653
No 476
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.86 E-value=0.001 Score=54.53 Aligned_cols=85 Identities=15% Similarity=0.254 Sum_probs=53.8
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHH--hcCCCEEEEEeCCCCCCHHHHH----HHHHHh-hhcCce----eE
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAE--STGIPLTLALNKVELVDEEVLN----TWKSRL-HTWGYE----PL 140 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~--~~~~~~~ivlnK~Dl~~~~~~~----~~~~~~-~~~~~~----~~ 140 (276)
....++|.+++|+|+..+..+...+..++.... ..+.|+++|.||+|+.+..... .....+ ..+++. .+
T Consensus 75 ~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
T 2zej_A 75 HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYH 154 (184)
T ss_dssp HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEE
T ss_pred HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheE
Confidence 356789999999999765222334555554433 2478889999999998754332 111222 334654 67
Q ss_pred EEecCCcc-chHHHHhh
Q 023887 141 FCSVESKL-GLDSLLQR 156 (276)
Q Consensus 141 ~~s~~~~~-~l~~l~~~ 156 (276)
.+|+.++. +++.|...
T Consensus 155 ~~Sa~~~~~~~~~l~~~ 171 (184)
T 2zej_A 155 FVNATEESDALAKLRKT 171 (184)
T ss_dssp ECCTTSCCHHHHHHHHH
T ss_pred EEecccCchhHHHHHHH
Confidence 88888774 77766554
No 477
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.85 E-value=0.00053 Score=55.23 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.2
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..++|+|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
No 478
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.84 E-value=0.0012 Score=56.81 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.0
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
-+++|+|.+|||||||++.+..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHh
Confidence 3799999999999999999875
No 479
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.84 E-value=0.00047 Score=58.34 Aligned_cols=22 Identities=50% Similarity=0.783 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHcCC
Q 023887 161 TTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
-++|+||||||||||++.|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999753
No 480
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.84 E-value=0.00043 Score=57.82 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=21.0
Q ss_pred CEEEEEecCCCChhHHHHHHcCC
Q 023887 160 QTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..++|+|+||+|||||++.|.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 481
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.83 E-value=0.00099 Score=59.39 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.8
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
..-.++++|.+|||||||+|.+.+.
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCChHHHHHHHHhC
Confidence 3467999999999999999999863
No 482
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.83 E-value=0.00077 Score=54.28 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=52.6
Q ss_pred ccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH-HHHHHHhhhcCceeEEEecCCccchHHH
Q 023887 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVL-NTWKSRLHTWGYEPLFCSVESKLGLDSL 153 (276)
Q Consensus 75 anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~l~~l 153 (276)
+++|.+++|+|+..+ .....++......++|+++|.||+|+.+.... .........++.+++.+|+.++.+++++
T Consensus 80 ~~~~~~i~v~D~~~~----~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 80 EKPDLVVNIVDATAL----ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEEL 155 (165)
T ss_dssp HCCSEEEEEEETTCH----HHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHH
T ss_pred CCCCEEEEEecCCch----hHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHH
Confidence 489999999998642 23333444445568999999999998532110 0011222345678899999999998887
Q ss_pred Hhhc
Q 023887 154 LQRL 157 (276)
Q Consensus 154 ~~~l 157 (276)
...+
T Consensus 156 ~~~l 159 (165)
T 2wji_A 156 KKAI 159 (165)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 483
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.82 E-value=0.0006 Score=55.52 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.1
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
+..+.|+|+|||||||+.+.|....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998743
No 484
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.82 E-value=0.0024 Score=54.49 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=53.5
Q ss_pred hhccccEEEEEEEcCCCCCCHHHHHHHHHHHH----hcCCCEEEEEeCCCCCCHHH--HHHHHHHhhhcCceeEEEecCC
Q 023887 73 PVANVDHLLLLFSMDQPKLEPFALTRFLVEAE----STGIPLTLALNKVELVDEEV--LNTWKSRLHTWGYEPLFCSVES 146 (276)
Q Consensus 73 ~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~----~~~~~~~ivlnK~Dl~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 146 (276)
..+++|.+++|+++..+. +...+..+..... ..++|+++|.||+||.+... .+........++++.+.+|+.+
T Consensus 108 ~~~~a~~~ilVydvt~~~-sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~ 186 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRA-SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAV 186 (211)
T ss_dssp CCCCCSEEEEEEETTCHH-HHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HHhhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCC
Confidence 456789999999997542 2223433333222 24789999999999964211 1111122234567888999999
Q ss_pred ccchHHHHhhc
Q 023887 147 KLGLDSLLQRL 157 (276)
Q Consensus 147 ~~~l~~l~~~l 157 (276)
+.+++++-..+
T Consensus 187 g~~v~elf~~l 197 (211)
T 2g3y_A 187 QHNVKELFEGI 197 (211)
T ss_dssp TBSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99988876654
No 485
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.82 E-value=0.0006 Score=55.87 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.1
Q ss_pred cCCEEEEEecCCCChhHHHHHHcC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+|..++|.|++||||||+.+.|..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999875
No 486
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.81 E-value=0.0023 Score=59.01 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=53.4
Q ss_pred hccccEEEEEEEcCCCC--CCHHHHHHHHHHHHh-----cCCCEEEEEeCCCCCCHHH-HHHHHHHhhhcCceeEEEecC
Q 023887 74 VANVDHLLLLFSMDQPK--LEPFALTRFLVEAES-----TGIPLTLALNKVELVDEEV-LNTWKSRLHTWGYEPLFCSVE 145 (276)
Q Consensus 74 ~anvD~vl~v~~~~~p~--~~~~~l~r~l~~a~~-----~~~~~~ivlnK~Dl~~~~~-~~~~~~~~~~~~~~~~~~s~~ 145 (276)
+.++|.+++|+|+..+. .....++.++..... .++|.++|+||+|+.+..+ .+.+...+.. .++++.+|+.
T Consensus 234 i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~-~~~v~~iSA~ 312 (342)
T 1lnz_A 234 IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD-DYPVFPISAV 312 (342)
T ss_dssp HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS-CCCBCCCSSC
T ss_pred HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc-CCCEEEEECC
Confidence 56799999999996521 122234444333333 4789999999999987542 2223222221 1567888988
Q ss_pred CccchHHHHhhc
Q 023887 146 SKLGLDSLLQRL 157 (276)
Q Consensus 146 ~~~~l~~l~~~l 157 (276)
++.++++|...+
T Consensus 313 tg~gi~eL~~~l 324 (342)
T 1lnz_A 313 TREGLRELLFEV 324 (342)
T ss_dssp CSSTTHHHHHHH
T ss_pred CCcCHHHHHHHH
Confidence 888888877654
No 487
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.81 E-value=0.00064 Score=63.62 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=0.0
Q ss_pred EEEEEecCCCChhHHHHHHcCC-------------CCCCccccccCcccccccceeeccccccccccccCCCCceeeeEE
Q 023887 161 TTVIVGPSGVGKSSLINALRSS-------------PHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGRGKHTTRHVS 227 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~-------------~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~gk~tt~~~~ 227 (276)
.++++|++|+|||||+|.|.+. . .+........| .|....
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~-----------------------~d~~~~e~~~g----iTi~~~ 57 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEE-----------------------IDNAPEERARG----ITINAA 57 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHH-----------------------HHSCCEEEETT----EEEECE
T ss_pred EEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhh-----------------------hhcCHHHHhcC----cEEEee
Q ss_pred EEecCCCc---EEEecCC
Q 023887 228 LLPLSGGG---YLADTPG 242 (276)
Q Consensus 228 ~~~~~~~~---~iiDtPg 242 (276)
.+...... .++||||
T Consensus 58 ~~~~~~~~~~~~iiDtpG 75 (397)
T 1d2e_A 58 HVEYSTAARHYAHTDCPG 75 (397)
T ss_dssp EEEEECSSCEEEEEECSS
T ss_pred eEEeccCCeEEEEEECCC
No 488
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.80 E-value=0.00057 Score=66.66 Aligned_cols=64 Identities=23% Similarity=0.303 Sum_probs=0.0
Q ss_pred EEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccccccccccccCC---------------CCceeee
Q 023887 161 TTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQRVGEVSTKSGR---------------GKHTTRH 225 (276)
Q Consensus 161 ~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~~~~~vs~~~g~---------------gk~tt~~ 225 (276)
.++++|++|+|||||+|.|++.. ..+.....-.+. .+..|..
T Consensus 15 ~I~IiG~~~aGKTTL~~~Ll~~~-----------------------g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~ 71 (529)
T 2h5e_A 15 TFAIISHPDAGKTTITEKVLLFG-----------------------QAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISIT 71 (529)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC-----------------------C-------------------------------CC
T ss_pred EEEEECCCCChHHHHHHHHHhhc-----------------------CCccccceeecCccccceeeccchhcccCCccee
Q ss_pred EEEEecCCCc---EEEecCCCCCCC
Q 023887 226 VSLLPLSGGG---YLADTPGFNQPS 247 (276)
Q Consensus 226 ~~~~~~~~~~---~iiDtPg~~~~~ 247 (276)
........+. .|+||||...+.
T Consensus 72 ~~~~~~~~~~~~i~liDTPG~~df~ 96 (529)
T 2h5e_A 72 TSVMQFPYHDCLVNLLDTPGHEDFS 96 (529)
T ss_dssp TTEEEEEETTEEEEEECCCCSTTCC
T ss_pred eeEEEEEECCeEEEEEECCCChhHH
No 489
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.78 E-value=0.00051 Score=56.38 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.5
Q ss_pred cCCEEEEEecCCCChhHHHHHHcC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
+|..++|+|++||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999973
No 490
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.78 E-value=0.0011 Score=55.68 Aligned_cols=87 Identities=14% Similarity=0.194 Sum_probs=53.8
Q ss_pred cccchhccccEEEEEEEcCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEeCCCCCCHHH--------------HHHHHHH
Q 023887 69 ILDPPVANVDHLLLLFSMDQPKLEPFAL-TRFLVEAES--TGIPLTLALNKVELVDEEV--------------LNTWKSR 131 (276)
Q Consensus 69 ~~r~~~anvD~vl~v~~~~~p~~~~~~l-~r~l~~a~~--~~~~~~ivlnK~Dl~~~~~--------------~~~~~~~ 131 (276)
+.+..+.++|.+++|+|+..+. +...+ ..++...+. .+.|+++|.||+|+.++.. .+.....
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 170 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPE-TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 170 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH
Confidence 3344678999999999997652 22223 333333332 4789999999999964210 1112223
Q ss_pred hhhcC-ceeEEEecC-CccchHHHHhh
Q 023887 132 LHTWG-YEPLFCSVE-SKLGLDSLLQR 156 (276)
Q Consensus 132 ~~~~~-~~~~~~s~~-~~~~l~~l~~~ 156 (276)
...++ ...+.+|+. ++.+++++...
T Consensus 171 ~~~~~~~~~~e~SAk~~~~gv~~lf~~ 197 (205)
T 1gwn_A 171 AKQIGAATYIECSALQSENSVRDIFHV 197 (205)
T ss_dssp HHHHTCSEEEECCTTTCHHHHHHHHHH
T ss_pred HHHcCCCEEEEeeeccCCcCHHHHHHH
Confidence 33455 478888987 56777776654
No 491
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.77 E-value=0.00037 Score=68.06 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=36.2
Q ss_pred chHHHHhhccCCEEEEEecCCCChhHHHHHHcCCCCCCccccccCcccccccceeeccc
Q 023887 149 GLDSLLQRLRDQTTVIVGPSGVGKSSLINALRSSPHASDAADVDNWFEPILGSKWFEDQ 207 (276)
Q Consensus 149 ~l~~l~~~l~g~~v~lvG~sGvGKSTLiN~L~g~~~~~~~~~~~~~~~p~~G~i~~~g~ 207 (276)
.+..++..++|..++|+|+||+|||||+++|.+.. .+..|.+.+.+.
T Consensus 98 ~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l------------~~~~~~i~~~~~ 144 (543)
T 3m6a_A 98 AVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL------------GRKFVRISLGGV 144 (543)
T ss_dssp HHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH------------TCEEEEECCCC-
T ss_pred HHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc------------CCCeEEEEeccc
Confidence 34455555689999999999999999999999854 566677766653
No 492
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.73 E-value=0.0028 Score=59.31 Aligned_cols=76 Identities=24% Similarity=0.381 Sum_probs=50.9
Q ss_pred chhccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCC-EEEEEeCCCCCC-HHHHH----HHHHHhhhcC-----ceeE
Q 023887 72 PPVANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIP-LTLALNKVELVD-EEVLN----TWKSRLHTWG-----YEPL 140 (276)
Q Consensus 72 ~~~anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~-~~ivlnK~Dl~~-~~~~~----~~~~~~~~~~-----~~~~ 140 (276)
..++++|.+++|+|+..+.. . ...+++..+...++| +++++||+|+.+ ++..+ ++...+..++ .+++
T Consensus 94 ~~~~~aD~~ilVvda~~g~~-~-qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 171 (405)
T 2c78_A 94 TGAAQMDGAILVVSAADGPM-P-QTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVI 171 (405)
T ss_dssp HHHTTCSSEEEEEETTTCCC-H-HHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEE
T ss_pred HHHHHCCEEEEEEECCCCCc-H-HHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEE
Confidence 35789999999999976532 2 344556666777898 789999999984 33222 2333445555 4578
Q ss_pred EEecCCccc
Q 023887 141 FCSVESKLG 149 (276)
Q Consensus 141 ~~s~~~~~~ 149 (276)
.+|+.++.+
T Consensus 172 ~~SA~~g~~ 180 (405)
T 2c78_A 172 RGSALLALE 180 (405)
T ss_dssp ECCHHHHHH
T ss_pred EccHHHhhh
Confidence 888766544
No 493
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.73 E-value=0.00071 Score=54.74 Aligned_cols=23 Identities=39% Similarity=0.758 Sum_probs=20.2
Q ss_pred cCCEEEEEecCCCChhHHHHHHc
Q 023887 158 RDQTTVIVGPSGVGKSSLINALR 180 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~ 180 (276)
.....+|+|+||+|||||+.+|.
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34588999999999999999976
No 494
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.73 E-value=0.00076 Score=53.94 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.6
Q ss_pred CEEEEEecCCCChhHHHHHH
Q 023887 160 QTTVIVGPSGVGKSSLINAL 179 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L 179 (276)
..++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 495
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.72 E-value=0.00065 Score=56.87 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.4
Q ss_pred CCEEEEEecCCCChhHHHHHHcCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSS 182 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~ 182 (276)
...++|+|+|||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
No 496
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.71 E-value=0.00054 Score=64.16 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=21.1
Q ss_pred CCEEEEEecCCCChhHHHHHHcC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g 181 (276)
...++++|++|+|||||+|.|.+
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEEcCCCCCHHHHHHHHHh
Confidence 45799999999999999999987
No 497
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.70 E-value=0.00056 Score=61.63 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=23.0
Q ss_pred cCCEEEEEecCCCChhHHHHHHcCCC
Q 023887 158 RDQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 158 ~g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
++.+++|+|+||||||||.+.|.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999988754
No 498
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.69 E-value=0.0008 Score=64.78 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.2
Q ss_pred CCEEEEEecCCCChhHHHHHHcCCC
Q 023887 159 DQTTVIVGPSGVGKSSLINALRSSP 183 (276)
Q Consensus 159 g~~v~lvG~sGvGKSTLiN~L~g~~ 183 (276)
.-.++++|++|+|||||+|.|.+..
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~ 43 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIA 43 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred CCEEEEECCCCChHHHHHHHHHCCC
Confidence 4579999999999999999999843
No 499
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.69 E-value=0.00075 Score=67.87 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=20.2
Q ss_pred CEEEEEecCCCChhHHHHHHcC
Q 023887 160 QTTVIVGPSGVGKSSLINALRS 181 (276)
Q Consensus 160 ~~v~lvG~sGvGKSTLiN~L~g 181 (276)
..++|+|++|+|||||+|.|++
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 500
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.66 E-value=0.0007 Score=59.65 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=55.5
Q ss_pred ccccEEEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH-HHHHHhhhcCceeEEEecCCccchHHH
Q 023887 75 ANVDHLLLLFSMDQPKLEPFALTRFLVEAESTGIPLTLALNKVELVDEEVLN-TWKSRLHTWGYEPLFCSVESKLGLDSL 153 (276)
Q Consensus 75 anvD~vl~v~~~~~p~~~~~~l~r~l~~a~~~~~~~~ivlnK~Dl~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~l~~l 153 (276)
.++|.+++|+|+..+. ....+.......++|+++|+||+|+.+..... ........++++++.+|+.++.+++++
T Consensus 82 ~~~d~vi~VvDas~~~----~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el 157 (256)
T 3iby_A 82 LEYDCIINVIDACHLE----RHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPAL 157 (256)
T ss_dssp SCCSEEEEEEEGGGHH----HHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHH
T ss_pred CCCCEEEEEeeCCCch----hHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHH
Confidence 7899999999987532 22222333346689999999999986542111 111222446889999999999999998
Q ss_pred Hhhcc
Q 023887 154 LQRLR 158 (276)
Q Consensus 154 ~~~l~ 158 (276)
...+.
T Consensus 158 ~~~i~ 162 (256)
T 3iby_A 158 QQSLL 162 (256)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88763
Done!