BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023888
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JWH|C Chain C, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
pdb|1JWH|D Chain D, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme
pdb|2R6M|A Chain A, Crystal Structure Of Rat Ck2-Beta Subunit
pdb|2R6M|B Chain B, Crystal Structure Of Rat Ck2-Beta Subunit
pdb|4DGL|A Chain A, Crystal Structure Of The Ck2 Tetrameric Holoenzyme
pdb|4DGL|B Chain B, Crystal Structure Of The Ck2 Tetrameric Holoenzyme
Length = 215
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 102/185 (55%), Positives = 127/185 (68%), Gaps = 13/185 (7%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y ALD+ILD+E Q
Sbjct: 9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIH-------------LEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 208
++L+E AAEMLYGLIH LEKY+ DFG CPRVYC QP LP+G SDIP
Sbjct: 69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128
Query: 209 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 268
+ VK+YCPKC D+Y P+S + DGAYFGT FPH+ M + +P++ +VPR++
Sbjct: 129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188
Query: 269 GFKLH 273
GFK+H
Sbjct: 189 GFKIH 193
>pdb|3EED|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Regulatory
Subunit (Ck2beta; Mutant 1-193)
pdb|3EED|B Chain B, Crystal Structure Of Human Protein Kinase Ck2 Regulatory
Subunit (Ck2beta; Mutant 1-193)
Length = 193
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 102/185 (55%), Positives = 127/185 (68%), Gaps = 13/185 (7%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y ALD+ILD+E Q
Sbjct: 9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIH-------------LEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 208
++L+E AAEMLYGLIH LEKY+ DFG CPRVYC QP LP+G SDIP
Sbjct: 69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128
Query: 209 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVF 268
+ VK+YCPKC D+Y P+S + DGAYFGT FPH+ M + +P++ +VPR++
Sbjct: 129 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLY 188
Query: 269 GFKLH 273
GFK+H
Sbjct: 189 GFKIH 193
>pdb|1RQF|A Chain A, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|B Chain B, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|D Chain D, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|E Chain E, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|G Chain G, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|H Chain H, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|J Chain J, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
pdb|1RQF|K Chain K, Structure Of Ck2 Beta Subunit Crystallized In The Presence
Of A P21waf1 Peptide
Length = 184
Score = 201 bits (510), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 116/170 (68%), Gaps = 13/170 (7%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y ALD+ILD+E Q
Sbjct: 15 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 74
Query: 162 NELVESAAEMLYGLIH-------------LEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 208
++L+E AAEMLYGLIH LEKY+ DFG CPRVYC QP LP+G SDIP
Sbjct: 75 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 134
Query: 209 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQK 258
+ VK+YCPKC D+Y P+S + DGAYFGT FPH+ M + +P++
Sbjct: 135 GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKR 184
>pdb|1QF8|A Chain A, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182)
From Homo Sapiens
pdb|1QF8|B Chain B, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182)
From Homo Sapiens
Length = 182
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/170 (54%), Positives = 112/170 (65%), Gaps = 13/170 (7%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y ALD ILD+E Q
Sbjct: 9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDXILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIH-------------LEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 208
++L+E AAE LYGLIH LEKY+ DFG CPRVYC QP LP+G SDIP
Sbjct: 69 SDLIEQAAEXLYGLIHARYILTNRGIAQXLEKYQQGDFGYCPRVYCENQPXLPIGLSDIP 128
Query: 209 RSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQK 258
+ VK+YCPKC D+Y P+S + DGAYFGT FPH + +P++
Sbjct: 129 GEAXVKLYCPKCXDVYTPKSSRHHHTDGAYFGTGFPHXLFXVHPEYRPKR 178
>pdb|2FJI|1 Chain 1, Crystal Structure Of The C-Terminal Domain Of The Exocyst
Subunit Sec6p
pdb|2FJI|2 Chain 2, Crystal Structure Of The C-Terminal Domain Of The Exocyst
Subunit Sec6p
Length = 399
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 108 NLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVES 167
N EFF ++ E I ++ +V Y+D +DL++ + D+ + E+ ++V+
Sbjct: 307 NFTVMEFFMDLSCEPIDSILDIWQKYLEV-YWDSRIDLLVGILKCRKDVSSSERKKIVQQ 365
Query: 168 AAEMLY 173
A EML+
Sbjct: 366 ATEMLH 371
>pdb|1V65|A Chain A, Solution Structure Of The Kruppel-Associated Box (Krab)
Domain
Length = 64
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 157 FTEEQNELVESAAEMLYGLIHLEKYKN 183
FTEE+ +L++S+ + LY + LE Y+N
Sbjct: 17 FTEEEWDLLDSSQKRLYEEVMLETYQN 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,999,128
Number of Sequences: 62578
Number of extensions: 308455
Number of successful extensions: 551
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 8
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)