Query 023888
Match_columns 275
No_of_seqs 139 out of 352
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 14:28:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgl_A Casein kinase II subuni 100.0 4.4E-85 1.5E-89 584.2 11.5 180 95-274 2-194 (215)
2 1qf8_A Casein kinase II; casei 100.0 1E-77 3.5E-82 525.7 9.2 166 96-261 3-181 (182)
3 4esj_A Type-2 restriction enzy 71.6 0.79 2.7E-05 41.9 -0.1 60 186-252 34-105 (257)
4 2con_A RUH-035 protein, NIN on 37.5 9 0.00031 29.1 0.6 13 210-222 26-38 (79)
5 3vk8_A Probable formamidopyrim 33.8 26 0.0009 31.9 3.2 37 184-224 251-289 (295)
6 3m7n_A Putative uncharacterize 32.3 23 0.00079 29.7 2.4 35 178-224 132-166 (179)
7 2jmo_A Parkin; IBR, E3 ligase, 28.8 39 0.0013 24.8 2.9 45 179-226 17-70 (80)
8 3u5n_A E3 ubiquitin-protein li 24.9 35 0.0012 29.0 2.2 35 188-227 24-58 (207)
9 1vk6_A NADH pyrophosphatase; 1 24.7 41 0.0014 29.9 2.8 33 186-228 107-139 (269)
10 3j20_Y 30S ribosomal protein S 23.4 49 0.0017 22.7 2.3 13 213-225 36-48 (50)
11 3o36_A Transcription intermedi 22.5 43 0.0015 27.8 2.3 34 188-226 21-54 (184)
12 1f62_A Transcription factor WS 22.3 24 0.00083 23.4 0.6 21 199-222 29-49 (51)
13 3na7_A HP0958; flagellar bioge 21.4 12 0.00041 33.0 -1.4 35 191-225 198-233 (256)
14 2nn6_I 3'-5' exoribonuclease C 21.1 42 0.0014 29.0 2.0 32 181-224 164-195 (209)
15 3v2d_6 50S ribosomal protein L 20.5 42 0.0014 23.6 1.6 17 206-222 29-45 (54)
16 3r8s_1 50S ribosomal protein L 20.5 38 0.0013 23.5 1.3 16 207-222 27-42 (50)
No 1
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=100.00 E-value=4.4e-85 Score=584.18 Aligned_cols=180 Identities=58% Similarity=1.128 Sum_probs=161.8
Q ss_pred CCCCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHHc
Q 023888 95 SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYG 174 (275)
Q Consensus 95 s~~e~~sWI~wFcsl~gneff~eVDedYI~D~FNL~GL~~~Vp~y~~AL~lILd~~~~~~~~~~~~~~~~ie~~A~~LYG 174 (275)
|++++.+||+|||+++|||||||||+|||+|+|||+||+++||+|++||+||||.+.+++++.++++.+.++++|++|||
T Consensus 2 s~s~~~sWI~wFc~~~gneffceVd~dyI~D~FNL~GL~~~Vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~A~~LYG 81 (215)
T 4dgl_A 2 SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYG 81 (215)
T ss_dssp ------CHHHHHHTSTTCTTCCCCCHHHHHSTTTTTTGGGTSSSHHHHHHHHTTC--------CTTHHHHHHHHHHHHHH
T ss_pred CCcccCcHHHHHhCCCCCeEEEEeCHHHhcCcccccCchhccccHHHHHHHHcCCCCcchhcccchhHHHHHHHHHHHhh
Confidence 34457799999999999999999999999999999999999999999999999998765444455567889999999999
Q ss_pred ccc-------------cccccccccCCCCcccCCCCCccccccCCCCCcccceEeCCCCCccccCCCCCCccccccccCC
Q 023888 175 LIH-------------LEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGT 241 (275)
Q Consensus 175 LIH-------------~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGt 241 (275)
||| ++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|+++++++||||||||
T Consensus 82 LIHARYIlT~~Gl~~M~eKY~~g~FG~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~DvY~P~s~r~~~iDGAyFGt 161 (215)
T 4dgl_A 82 LIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGT 161 (215)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCCEECCSSTTSTTSBGGGTTT
T ss_pred hhhHhheecHHHHHHHHHHHhcCCCCcCCccccCCCceeccccCCCCCccceeEeCCCcccccCCCcccccccccceecC
Confidence 999 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhCCCCCCCCCCCcceeeeeeeecC
Q 023888 242 TFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK 274 (275)
Q Consensus 242 sFpHlFl~~yP~l~P~~~~~~YvPrIFGFKIh~ 274 (275)
||||||||+||++.|+++.++|||||||||||+
T Consensus 162 sFph~f~~~~p~l~p~~~~~~yvPrifGFkih~ 194 (215)
T 4dgl_A 162 GFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHP 194 (215)
T ss_dssp THHHHHHHHCGGGCCCSCSCCCCCEETTEEECT
T ss_pred cchHHHHHHcccccCCCCCCcccCeEeEEEecH
Confidence 999999999999999999999999999999996
No 2
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=100.00 E-value=1e-77 Score=525.66 Aligned_cols=166 Identities=58% Similarity=1.113 Sum_probs=149.1
Q ss_pred CCCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHHcc
Q 023888 96 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL 175 (275)
Q Consensus 96 ~~e~~sWI~wFcsl~gneff~eVDedYI~D~FNL~GL~~~Vp~y~~AL~lILd~~~~~~~~~~~~~~~~ie~~A~~LYGL 175 (275)
++++.+||+|||+++||+||||||+|||+|+|||+||+++||+|++||+||||.+..+++++++++.+.++++|++||||
T Consensus 3 ~~~~~sWI~wF~~~~gneffceVd~dyI~D~FNL~GL~~~vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~a~~LYGL 82 (182)
T 1qf8_A 3 SSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGL 82 (182)
T ss_dssp ----CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHH
T ss_pred CCccCcHHHHHhCCCCCeEEEEeCHHHhcCcchhhCccccccCHHHHHHHHhCCCCccccccchhhhHHHHHHHHHHhch
Confidence 34577899999999999999999999999999999999999999999999999987655444555678999999999999
Q ss_pred cc-------------cccccccccCCCCcccCCCCCccccccCCCCCcccceEeCCCCCccccCCCCCCccccccccCCc
Q 023888 176 IH-------------LEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTT 242 (275)
Q Consensus 176 IH-------------~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGts 242 (275)
|| ++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|++.++.+|||||||||
T Consensus 83 IHaRyIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~DvY~p~s~~~~~iDGAyFGts 162 (182)
T 1qf8_A 83 IHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTG 162 (182)
T ss_dssp HHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSGGGTTSBGGGTCSS
T ss_pred hhhhhcccHHHHHHHHHhhhcCcCCCCCccccCCCcccCCccCCCCCCCceEEECCCccceeCCCcccccccccceecCc
Confidence 99 79999999999999999999999999999999999999999999999999999889999999999
Q ss_pred hhHHHHHHhCCCCCCCCCC
Q 023888 243 FPHLFLMTYGHLKPQKATQ 261 (275)
Q Consensus 243 FpHlFl~~yP~l~P~~~~~ 261 (275)
|||||||+||++.|+++.+
T Consensus 163 Fph~f~~~~p~l~p~~~~~ 181 (182)
T 1qf8_A 163 FPHMLFMVHPEYRPKRPAN 181 (182)
T ss_dssp HHHHHHHHCGGGSCSCC--
T ss_pred hHHHHHHHcccccCCCCCC
Confidence 9999999999999987654
No 3
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=71.60 E-value=0.79 Score=41.90 Aligned_cols=60 Identities=30% Similarity=0.603 Sum_probs=36.7
Q ss_pred cCCCCcccCCCCCccccccCCCCCcccce-EeCCCCCccccCCCCC--C--ccccccccC-------CchhHHHHHHhC
Q 023888 186 FGRCPRVYCCGQPCLPVGQSDIPRSSTVK-IYCPKCEDIYYPRSKY--Q--GNIDGAYFG-------TTFPHLFLMTYG 252 (275)
Q Consensus 186 FG~CPRv~C~gq~lLPiGlSD~pg~stVK-lYCP~C~DVY~P~s~~--~--~~IDGAyFG-------tsFpHlFl~~yP 252 (275)
-+.||+ |..-++-= -+...+|. .|||.|.+-|.-+|.. . ...||||-- .+=|.+|||+|.
T Consensus 34 n~yCPn--CG~~~l~~-----f~nN~PVaDF~C~~C~EeyELKSk~~~~~~~I~dGAY~Tmi~Ri~s~~NPnFffL~Y~ 105 (257)
T 4esj_A 34 QSYCPN--CGNNPLNH-----FENNRPVADFYCNHCSEEFELKSKKGNFSSTINDGAYATMMKRVQADNNPNFFFLTYT 105 (257)
T ss_dssp HCCCTT--TCCSSCEE-----C----CCCEEECTTTCCEEEEEEEESSCCSEEEEEEHHHHHHHHHTTCCCEEEEEEEC
T ss_pred CCcCCC--CCChhhhh-----ccCCCcccccccCCcchhheeccccCccCccccCchHHHHHHHHhccCCCCEEEEEec
Confidence 356885 43333322 23445565 8999999999887643 1 247999963 255777888875
No 4
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=37.49 E-value=9 Score=29.13 Aligned_cols=13 Identities=23% Similarity=0.876 Sum_probs=10.9
Q ss_pred cccceEeCCCCCc
Q 023888 210 SSTVKIYCPKCED 222 (275)
Q Consensus 210 ~stVKlYCP~C~D 222 (275)
..+-|.|||+|.-
T Consensus 26 ~~~~k~FCp~CGn 38 (79)
T 2con_A 26 SDMNRVFCGHCGN 38 (79)
T ss_dssp SCSSCCSCSSSCC
T ss_pred CCcccccccccCc
Confidence 4567999999986
No 5
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=33.83 E-value=26 Score=31.90 Aligned_cols=37 Identities=8% Similarity=0.193 Sum_probs=20.4
Q ss_pred cccCC--CCcccCCCCCccccccCCCCCcccceEeCCCCCccc
Q 023888 184 YDFGR--CPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIY 224 (275)
Q Consensus 184 g~FG~--CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY 224 (275)
.+||+ || | |.++.=+-+-+.....+.--|||.|+..-
T Consensus 251 ~VYgR~g~P---C-G~~I~~~~~~~~~~~~R~t~~CP~CQ~~~ 289 (295)
T 3vk8_A 251 LVYRKKKDP---N-GNKVIADKIIGSGKNKRTTYWAPAIQKLE 289 (295)
T ss_dssp SSTTCSBCT---T-SCBCEEEECSCCTTCCCEEEECTTTCBCC
T ss_pred EEeCCCCCC---C-CCcEEEEEecCCCCCCCccEECCCCCCCc
Confidence 56775 55 4 55443221111122456678999999764
No 6
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=32.28 E-value=23 Score=29.71 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=25.1
Q ss_pred cccccccccCCCCcccCCCCCccccccCCCCCcccceEeCCCCCccc
Q 023888 178 LEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIY 224 (275)
Q Consensus 178 ~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY 224 (275)
++.-.-..+..|++ | |.++.|++ . .+.||.|.-+-
T Consensus 132 k~~~lGvv~a~~~~--~-g~~m~~~~-~--------~~~cp~~g~~e 166 (179)
T 3m7n_A 132 KEEEMGVLRALCSN--C-KTEMVREG-D--------ILKCPECGRVE 166 (179)
T ss_dssp CSTTCEEEECBCTT--T-CCBCEECS-S--------SEECSSSCCEE
T ss_pred ecCCCCEEEecccc--c-CCceEECC-C--------EEECCCCCCEE
Confidence 34444556677884 4 78899987 3 39999999885
No 7
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=28.79 E-value=39 Score=24.78 Aligned_cols=45 Identities=22% Similarity=0.339 Sum_probs=23.5
Q ss_pred ccccccccC-CCCcccCCCCCccccccCCCCCc--------ccceEeCCCCCccccC
Q 023888 179 EKYKNYDFG-RCPRVYCCGQPCLPVGQSDIPRS--------STVKIYCPKCEDIYYP 226 (275)
Q Consensus 179 eKY~~g~FG-~CPRv~C~gq~lLPiGlSD~pg~--------stVKlYCP~C~DVY~P 226 (275)
+.|....-+ -||+..|...-... + +.... .-=..||.+|+..||.
T Consensus 17 e~~v~~~~~~~CP~p~C~~~v~~~-~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 17 EECVLQMGGVLCPRPGCGAGLLPE-P--DQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSSCCCSSCCCCSSSCCCCCCCC-S--CTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred HHHhhhCCcEECCCCCCCcccEEC-C--CCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 344433333 39999997653322 1 11111 1114578888888876
No 8
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=24.86 E-value=35 Score=29.01 Aligned_cols=35 Identities=29% Similarity=0.652 Sum_probs=22.7
Q ss_pred CCCcccCCCCCccccccCCCCCcccceEeCCCCCccccCC
Q 023888 188 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 227 (275)
Q Consensus 188 ~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~ 227 (275)
.|||.+.-. ||.-+++.+|.. ..|||.|...-.+.
T Consensus 24 ~C~~~~H~~--Cl~p~l~~~p~~---~W~C~~C~~~~~~~ 58 (207)
T 3u5n_A 24 KCPKVFHLT--CHVPTLLSFPSG---DWICTFCRDIGKPE 58 (207)
T ss_dssp SSSCEECTT--TSSSCCSSCCSS---CCCCTTTSCSSSCS
T ss_pred CCCCccCCc--cCCCCCCCCCCC---CEEeCceeCccccc
Confidence 488887654 443355555532 59999999875443
No 9
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=24.73 E-value=41 Score=29.87 Aligned_cols=33 Identities=27% Similarity=0.798 Sum_probs=24.2
Q ss_pred cCCCCcccCCCCCccccccCCCCCcccceEeCCCCCccccCCC
Q 023888 186 FGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRS 228 (275)
Q Consensus 186 FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s 228 (275)
+-.||+ | |.++.+ .....+.+||.|..++.|+.
T Consensus 107 ~~fC~~--C-G~~~~~-------~~~~~~~~C~~C~~~~yp~~ 139 (269)
T 1vk6_A 107 HKYCGY--C-GHEMYP-------SKTEWAMLCSHCRERYYPQI 139 (269)
T ss_dssp TSBCTT--T-CCBEEE-------CSSSSCEEESSSSCEECCCC
T ss_pred CCcccc--C-CCcCcc-------CCCceeeeCCCCCCEecCCC
Confidence 567887 4 455544 35678899999999999864
No 10
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.36 E-value=49 Score=22.68 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=10.1
Q ss_pred ceEeCCCCCcccc
Q 023888 213 VKIYCPKCEDIYY 225 (275)
Q Consensus 213 VKlYCP~C~DVY~ 225 (275)
-.++|++|.-+|.
T Consensus 36 ~R~~C~kCG~t~~ 48 (50)
T 3j20_Y 36 DRWACGKCGYTEW 48 (50)
T ss_dssp SEEECSSSCCEEE
T ss_pred CeEECCCCCCEEE
Confidence 5789999987763
No 11
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=22.46 E-value=43 Score=27.77 Aligned_cols=34 Identities=24% Similarity=0.613 Sum_probs=22.2
Q ss_pred CCCcccCCCCCccccccCCCCCcccceEeCCCCCccccC
Q 023888 188 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYP 226 (275)
Q Consensus 188 ~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P 226 (275)
.|||++.-.+ |--++...|.. ..|||.|...=.|
T Consensus 21 ~C~~~~H~~C--~~p~l~~~p~~---~W~C~~C~~~~~~ 54 (184)
T 3o36_A 21 KCPKVFHLSC--HVPTLTNFPSG---EWICTFCRDLSKP 54 (184)
T ss_dssp SSSCEECTTT--SSSCCSSCCSS---CCCCTTTSCSSSC
T ss_pred CCCcccCccc--cCCCCCCCCCC---CEECccccCcccc
Confidence 4888887554 43344555532 5999999987544
No 12
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.33 E-value=24 Score=23.37 Aligned_cols=21 Identities=29% Similarity=0.828 Sum_probs=10.8
Q ss_pred ccccccCCCCCcccceEeCCCCCc
Q 023888 199 CLPVGQSDIPRSSTVKIYCPKCED 222 (275)
Q Consensus 199 lLPiGlSD~pg~stVKlYCP~C~D 222 (275)
+|-.++..+|.. ..|||.|..
T Consensus 29 Cl~p~l~~~P~g---~W~C~~C~~ 49 (51)
T 1f62_A 29 CLRPALYEVPDG---EWQCPACQP 49 (51)
T ss_dssp HHCTTCCSCCSS---CCSCTTTSC
T ss_pred cCCCCcCCCCCC---cEECcCccc
Confidence 443345555532 567777753
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.37 E-value=12 Score=32.98 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=23.1
Q ss_pred cccCCCCCc-cccccCCCCCcccceEeCCCCCcccc
Q 023888 191 RVYCCGQPC-LPVGQSDIPRSSTVKIYCPKCEDIYY 225 (275)
Q Consensus 191 Rv~C~gq~l-LPiGlSD~pg~stVKlYCP~C~DVY~ 225 (275)
+-.|.||++ ||-+.-.....+.--++||.|+-|-.
T Consensus 198 ~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 198 KQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILY 233 (256)
T ss_dssp TTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEE
T ss_pred CCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEE
Confidence 447888874 77665543333333399999999864
No 14
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=21.07 E-value=42 Score=28.98 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=23.7
Q ss_pred ccccccCCCCcccCCCCCccccccCCCCCcccceEeCCCCCccc
Q 023888 181 YKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIY 224 (275)
Q Consensus 181 Y~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY 224 (275)
-.-..+..|++ |.++.|++-. .|.||.|.-+-
T Consensus 164 ~lGVv~A~c~~----g~~m~~~~~~--------~m~cp~cg~~E 195 (209)
T 2nn6_I 164 ELGVVVAHSES----GIQMVPISWC--------EMQCPKTHTKE 195 (209)
T ss_dssp SCEECCCBCSS----SCBCEEEETT--------EEECTTTTCCB
T ss_pred CCcEEEEEcCC----CCEEEEccCC--------EEECCCCCCEE
Confidence 33455667887 6789998753 39999999885
No 15
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=20.53 E-value=42 Score=23.62 Aligned_cols=17 Identities=29% Similarity=0.894 Sum_probs=13.5
Q ss_pred CCCCcccceEeCCCCCc
Q 023888 206 DIPRSSTVKIYCPKCED 222 (275)
Q Consensus 206 D~pg~stVKlYCP~C~D 222 (275)
..|..-.+|-|||.|+.
T Consensus 29 n~p~rLelkKycp~c~k 45 (54)
T 3v2d_6 29 NTPNKLELRKYCPWCRK 45 (54)
T ss_dssp TSCSCCEEEEEETTTTE
T ss_pred CCCcccEEeeeCCCCCC
Confidence 45667788999999975
No 16
>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ...
Probab=20.50 E-value=38 Score=23.45 Aligned_cols=16 Identities=19% Similarity=0.330 Sum_probs=12.8
Q ss_pred CCCcccceEeCCCCCc
Q 023888 207 IPRSSTVKIYCPKCED 222 (275)
Q Consensus 207 ~pg~stVKlYCP~C~D 222 (275)
.|..-.+|-|||.|+.
T Consensus 27 ~~~rLelkKycp~~~k 42 (50)
T 3r8s_1 27 KPEKLELKKFDPVVRQ 42 (50)
T ss_dssp CCSCCCEEEEETTTTE
T ss_pred CCccceEeeeCcCCCC
Confidence 4566678999999975
Done!