Citrus Sinensis ID: 023889

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKRQ
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEcccHHHHHHHHHHHHHHHHHHHHHcccHccHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MAMSEQTVTAIKSYQNQAQVLVKNyiiadpfipyTSILAGLLACKVVYDLTQLISTFYFKAYNgltkiqrmewnnrgiSTVHAIFITALSLYYVFWSdlfsdqqhtgpitfrsswlsnfglgvsVGYFLADLGMIFWLypslggmeyVVHHSLSGIAVAYSMFSGEGQLYTYMVLISevttpeinmRWYLdtagmkrstTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKRQ
Flexible Loop (DISEMBL)
MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKRQ
Low Complexity Region (SEG)
MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKRQ
Disordered region (IsUnstruct)
*********AIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGLK*******
Disordered Region (DISOPRED)
***********KSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAK**
Disordered Region (DISEMBL)
*********AIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKRQ
Disordered Region (DISPRO)
****EQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKR*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q6PGS5	262	Transmembrane protein 56-	N/A	no	0.781	0.820	0.290	4e-18
Q8CGF5	276	Transmembrane protein 56	yes	no	0.756	0.753	0.245	4e-16
Q96MV1	263	Transmembrane protein 56	yes	no	0.763	0.798	0.269	2e-14
Q5XIY2	264	Transmembrane protein 56-	no	no	0.8	0.833	0.25	2e-14
Q6GLX2	258	Transmembrane protein 56-	N/A	no	0.876	0.934	0.252	5e-14
Q6P4N1	259	Transmembrane protein 56	no	no	0.869	0.922	0.25	1e-13
Q550S9	257	Transmembrane protein 56	yes	no	0.832	0.891	0.250	2e-10
Q550T0	258	Transmembrane protein 56	no	no	0.796	0.848	0.228	3e-09
Q0VD42	245	Transmembrane protein 136	no	no	0.487	0.546	0.297	1e-05
Q1LXV8	242	Transmembrane protein 136	no	no	0.44	0.5	0.312	1e-05

>sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 12/227 (5%)

Query: 54  ISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRS 113
           +ST     ++ L+  Q++EWN+R +S+ HA+ +    LY +    ++ D  +  P+ +  
Sbjct: 30  LSTRLTGGFHKLSARQKIEWNSRTVSSFHALVVGCFCLYIL----VYDDAVNADPV-WGD 84

Query: 114 SWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL--YT 171
            ++    + V+ GY ++DL +I + +  +G   +V HH  +  A  Y +  GEG L  + 
Sbjct: 85  PFMVKLNVAVTSGYLISDLLLIIYYWKEIGDKYFVTHHLAALYACYYVL--GEGMLPYFG 142

Query: 172 YMVLISEVTTPEINMRWYLDTAG-MKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLH 230
              LI+E +TP +N RW+ +  G  K S   +VNGV++  ++ I RI +    +  V+  
Sbjct: 143 NFRLIAEFSTPFVNQRWFFEVLGYSKYSLPNMVNGVLMTISFFIVRIAVIPIYYGRVFST 202

Query: 231 YD-QVVEMHAIGYLLVFVVPFV-LAIMNVMWFGKILKGLKKTLAKRQ 275
           +  +      +G    +++  V L IMNVMW  KI KG  K L  R 
Sbjct: 203 FGTEAFHRLGLGAQCAWIISSVSLDIMNVMWMIKIAKGCYKVLYHRD 249

Xenopus laevis (taxid: 8355)

>sp|Q8CGF5|TMM56_MOUSE Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 109/216 (50%), Gaps = 8/216 (3%)

Query: 60  KAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNF 119
             YN L+  +++EWN+R +ST H++ +    LY  F    F +   T P+    +++ N 
Sbjct: 49  SGYNSLSIDKKIEWNSRVVSTCHSLLVGIFGLYLFF----FDEATITDPLWGDPTYV-NI 103

Query: 120 GLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEV 179
            +  + GY ++DL +I + +  +G   +++HH     A  + + +G         L++E+
Sbjct: 104 NIATASGYLISDLLIILFNWKVIGDKFFIIHHCAGLTAYYFVLTTGALAYIANFRLLAEL 163

Query: 180 TTPEINMRWYLDTAGMKR-STTYLVNGVIIFFAWLIARILLFVYMFYHVYLHY--DQVVE 236
           ++P +N RW+ +     + S   ++NG+++   + I RI+    M++ +Y  Y  +  + 
Sbjct: 164 SSPFVNQRWFFEALKYPKFSKANVINGILMTVVFFIVRIISIPPMYFFLYSVYGTEPYIR 223

Query: 237 MHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLA 272
              +   +  V   +L +MN+MW  KI KG  K ++
Sbjct: 224 FGFVIQSVWIVTCVILDVMNIMWMIKITKGCIKVIS 259

Mus musculus (taxid: 10090)

>sp|Q96MV1|TMM56_HUMAN Transmembrane protein 56 OS=Homo sapiens GN=TMEM56 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 111/219 (50%), Gaps = 9/219 (4%)

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
            +N L+  +++EWN+R +ST H++ +    L Y+F   LF +     P+    S L+N  
Sbjct: 37  GFNSLSFKKKIEWNSRVVSTCHSLVVGIFGL-YIF---LFDEATKADPLWGGPS-LANVN 91

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           + ++ GY ++DL +I   +  +G   +++HH  S  A    + +G         L++E++
Sbjct: 92  IAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAYIGNFRLLAELS 151

Query: 181 TPEINMRWYLDTAGMKR-STTYLVNGVIIFFAWLIARI--LLFVYMFYHVYLHYDQVVEM 237
           +P +N RW+ +     + S   ++NG+++   + I RI  +L  Y F +     +  + +
Sbjct: 152 SPFVNQRWFFEALKYPKFSKAIVINGILMTVVFFIVRIASMLPHYGFMYSVYGTEPYIRL 211

Query: 238 HAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAK-RQ 275
             +  L   +   VL +MNVMW  KI KG  K ++  RQ
Sbjct: 212 GVLIQLSWVISCVVLDVMNVMWMIKISKGCIKVISHIRQ 250

Homo sapiens (taxid: 9606)

>sp|Q5XIY2|TM56B_DANRE Transmembrane protein 56-B OS=Danio rerio GN=tmem56b PE=2 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 50  LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPI 109
           ++ ++S+ + + Y  L   +  +WN+R +STVHA+ I  L   Y+ W D   D  +  P+
Sbjct: 23  VSPVLSSNFTQGYGKLPPNKLNDWNSRLVSTVHAL-IVGLFCLYILWYD---DAVNEDPV 78

Query: 110 TFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL 169
            +    L    + ++ GY   DL ++   + ++G + +V HH  +  A  Y +  G    
Sbjct: 79  -WGDPNLVKLNVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPY 137

Query: 170 YTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLV-NGVIIFFAWLIARILLFVYMFYHVY 228
           +    LISE++TP +N RW+ +     R+   +V NG+ +   + + RI +    +  V+
Sbjct: 138 FANFRLISELSTPFVNQRWFFEALAYPRTHQLVVANGIAMAVVFFLVRIAVMPPYWAKVF 197

Query: 229 -LHYDQVVEMHAIGYLLVFVVPFV-LAIMNVMWFGKILKGLKKTLAKR 274
            + Y    E   +   + +++  V L I+N++W  KI +G  K +  +
Sbjct: 198 GIIYSPTFEKLGLAIQVAWIISCVCLDILNIIWMYKIARGCYKVITGK 245

Danio rerio (taxid: 7955)

>sp|Q6GLX2|TM56A_XENLA Transmembrane protein 56-A OS=Xenopus laevis GN=tmem56-a PE=2 SV=1

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 116/250 (46%), Gaps = 9/250 (3%)

Query: 29  DPFIPYTSILAGLLACKVVYD-LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFIT 87
           D  I Y  +    L  ++++  ++  + T Y   Y  L+  ++ EW++R +ST HA+ + 
Sbjct: 3   DVLISYCVVTGSFLGFQLLFSAISPRLFTKYSSTYRQLSFGKQCEWDSRFVSTNHALIVG 62

Query: 88  ALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEY 147
           +  LY +     + D  +  PI     W+    + ++ GY + DL ++   +  +     
Sbjct: 63  SACLYIL----AYDDAVNADPIWGDPFWV-KMNVAITCGYLVQDLLLLARFWKVMRDPYM 117

Query: 148 VVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRST-TYLVNGV 206
           V HH     +  Y +  G    +    LISE++TP +N RW+ D  G  RS+   L+NG+
Sbjct: 118 VCHHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRWFFDVIGKPRSSWPVLLNGL 177

Query: 207 IIFFAWLIARILLFVYMFYHVYLHYDQVVEMH-AIGYLLVFVVPF-VLAIMNVMWFGKIL 264
            +   + I RI +    +  V+  +     +   IG  + ++V   VL I+NV W  KI 
Sbjct: 178 AMALVFFIVRIAVIPSYYSQVFATFGTEGYIRLGIGPQVAWIVSCVVLDILNVFWMYKIA 237

Query: 265 KGLKKTLAKR 274
           +G  K +  +
Sbjct: 238 RGFYKVVKAK 247

Xenopus laevis (taxid: 8355)

>sp|Q6P4N1|TMM56_XENTR Transmembrane protein 56 OS=Xenopus tropicalis GN=tmem56 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 115/248 (46%), Gaps = 9/248 (3%)

Query: 31  FIPYTSILAGLLACKVVYDLTQLIS-TFYFKAYNGLTKIQRMEWNNRGISTVHAIFITAL 89
           FI Y  +    L  ++++ +    + T Y   Y  L+  ++ EW++R +ST HA+ + + 
Sbjct: 6   FISYCVVTGSFLGFQLLFSIISPRTFTKYSSTYRQLSFGKQCEWDSRCVSTTHALVVGSG 65

Query: 90  SLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVV 149
            LY +     + +  +  PI     W+    + ++ GY + DL ++   +  +     V 
Sbjct: 66  CLYIL----AYDEAVNADPIWGDPFWV-KMNVAITCGYLVHDLLLLARFWKVMRDPYMVC 120

Query: 150 HHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRST-TYLVNGVII 208
           HH     +  Y +  G    +    LISE++TP +N RW+ D  G  RS+   L+NG+ +
Sbjct: 121 HHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRWFFDVIGKPRSSWPVLLNGLAM 180

Query: 209 FFAWLIARILLFVYMFYHVYLHYDQVVEMH-AIGYLLVFVVPF-VLAIMNVMWFGKILKG 266
              + I RI +    +  V+  +     +   IG  + ++V   VL I+NV W  KI +G
Sbjct: 181 ALVFFIVRIAVIPSYYSQVFATFGTEGYIRLGIGPQVAWIVSCVVLDILNVFWMYKIARG 240

Query: 267 LKKTLAKR 274
             K +  +
Sbjct: 241 FYKVVKAK 248

Xenopus tropicalis (taxid: 8364)

>sp|Q550S9|TM56B_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum GN=tmem56b PE=3 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 125/251 (49%), Gaps = 22/251 (8%)

Query: 37  ILAGLLACKVVYD-----LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSL 91
           IL   L C +++      L ++I   + K   G  + +R+EW NR ISTV+AI  +ALS+
Sbjct: 8   ILYQDLPCFLLFTSLHLFLPKIIEIIFKKNNIGFYERKRIEWPNRIISTVNAIVTSALSI 67

Query: 92  YYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHH 151
           Y +++++   +   +      +S +S F       YF+ D  +  +    L     ++HH
Sbjct: 68  YCLYYNEWIVNSLRS------TSEMSYFIFKFITYYFIYDFIISSYYSKYLFTWGNLLHH 121

Query: 152 SLSGIAVAYSMFSGEGQLYTYMV--LISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIF 209
           +++   ++++   G+G  +  ++    +E+TTP IN+R++L    +K    Y++NG++IF
Sbjct: 122 TIA--LLSFTFLGGKGLAHHLLLSYTFTEITTPLINLRFFLLDLNLKNHPLYVINGLLIF 179

Query: 210 FAWLIARILLFVYMFYHVYL---HYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKG 266
             +++ R+       + V     HY    +   I + + FV P  + ++N+ W   I K 
Sbjct: 180 VGFVLFRVFYTSATMFDVIFNQPHYSIETD-PLIPFFINFVYP-AITLLNLYWTFYISKS 237

Query: 267 LKK--TLAKRQ 275
           + K  T +K +
Sbjct: 238 IFKYFTTSKNE 248

Dictyostelium discoideum (taxid: 44689)

>sp|Q550T0|TM56A_DICDI Transmembrane protein 56 homolog A OS=Dictyostelium discoideum GN=tmem56a PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 50  LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPI 109
           +  L+ T +      L+   ++EW N+ ++T+ +I   +LS Y ++    +   + T   
Sbjct: 28  IPSLLQTIFNNNEKQLSYSSKIEWTNKIVATISSIVSFSLSCYCIYNKKSWVTNEMTS-- 85

Query: 110 TFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIA--VAYSMFSGEG 167
              +  LS+F L     YFL D   +   Y  L     ++HH + GI   V   ++  + 
Sbjct: 86  ---TCALSDFILKFISFYFLFDALHLIIYYKQLFDWPIIIHHLVVGILSYVYIGLYYKKV 142

Query: 168 QLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHV 227
            L     L+ E+T P I+M+W+L    ++    Y +NG ++ F ++  R +        +
Sbjct: 143 HLTLLYFLLFEITNPFIHMKWFLKDLKLENHILYSINGFMMAFFFIFIRDIYVPIKVVKI 202

Query: 228 YLHYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKRQ 275
           Y+  +   E+++I   ++F    ++ I+N+ W   ++KG+ K L++ +
Sbjct: 203 YI--NGYTELNSIANTIIFFCFPIITILNLFWTYLVIKGILKHLSRTK 248

Dictyostelium discoideum (taxid: 44689)

>sp|Q0VD42|TM136_BOVIN Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           ++  L K +  EWN R ++  H I    LS Y  F    +       P T     L    
Sbjct: 22  SFCRLNKHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGSPNTP----LQVHV 77

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLI-SEV 179
           L +++GYF+ DLG    +Y    G   + HH+LS + +  ++  GE       VL  SE+
Sbjct: 78  LCLTLGYFIFDLGWC--IYFRSEGPLMLAHHTLSILGIIVALVLGESGTEVNAVLFGSEI 135

Query: 180 TTPEINMRWYLDTAGMKRSTT 200
           T P + +RW+L   G   S T
Sbjct: 136 TNPLLQIRWFLRETGHYHSFT 156

Bos taurus (taxid: 9913)

>sp|Q1LXV8|TM136_DANRE Transmembrane protein 136 OS=Danio rerio GN=tmem136 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 7/128 (5%)

Query: 72  EWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLAD 131
           EWN R ++  H I I  L+ Y  F   +      T P T  +++     L +S+GYFL D
Sbjct: 32  EWNCRLVTLFHGILIICLTAYIGF---IAGPWPFTHPGT-ENTYFQILTLVLSLGYFLFD 87

Query: 132 LGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLI-SEVTTPEINMRWYL 190
             M + +Y    G   + HH++S   +  ++  GE  + T  VL  SE+T P +  RW+L
Sbjct: 88  --MAWCVYFRTEGPVMLAHHTMSIFGILLALGLGESGIETCAVLFGSEITNPLLQARWFL 145

Query: 191 DTAGMKRS 198
              G   S
Sbjct: 146 KRMGCYDS 153

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
359484042	275	PREDICTED: transmembrane protein 56-like	1.0	1.0	0.8	1e-130
296085343	267	unnamed protein product [Vitis vinifera]	0.967	0.996	0.808	1e-127
449487670	274	PREDICTED: transmembrane protein 56-B-li	0.996	1.0	0.773	1e-125
449455419	274	PREDICTED: transmembrane protein 56-B-li	0.996	1.0	0.773	1e-125
224136440	275	predicted protein [Populus trichocarpa]	1.0	1.0	0.774	1e-124
224115498	275	predicted protein [Populus trichocarpa]	0.996	0.996	0.762	1e-123
255550713	275	conserved hypothetical protein [Ricinus	1.0	1.0	0.770	1e-123
297851934	278	hypothetical protein ARALYDRAFT_473644 [	0.985	0.974	0.745	1e-118
18397885	278	TRAM, LAG1 and CLN8 (TLC) lipid-sensing	0.985	0.974	0.741	1e-118
222423958	278	AT1G31300 [Arabidopsis thaliana]	0.985	0.974	0.738	1e-116

>gi|359484042|ref|XP_002263050.2| PREDICTED: transmembrane protein 56-like [Vitis vinifera]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/275 (80%), Positives = 250/275 (90%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           MA SE+T+ AIK+YQNQA+ LVK+Y++ADPFIPYTSIL+GL ACK+VYDLTQLISTFYFK
Sbjct: 1   MASSERTIMAIKAYQNQAEQLVKDYLLADPFIPYTSILSGLFACKMVYDLTQLISTFYFK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           +Y GLTKIQR+EWNNR +STVHA FI ALSLY+VFWSDLFSD +  G +TFRSS LS FG
Sbjct: 61  SYAGLTKIQRIEWNNRSMSTVHAFFIAALSLYFVFWSDLFSDHRLAGLVTFRSSPLSTFG 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LGVSVGYFLAD+GMIFWLYPSLGG+EY+VHHSLS IAVAY+M SGEGQLYTYMVLISEVT
Sbjct: 121 LGVSVGYFLADIGMIFWLYPSLGGIEYIVHHSLSAIAVAYAMMSGEGQLYTYMVLISEVT 180

Query: 181 TPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAI 240
           TPEINMRWYLDTAGMKRS+ YL+NG++IFF WL+AR+LLFVYMFYHVYLHYDQV +MH  
Sbjct: 181 TPEINMRWYLDTAGMKRSSAYLINGIVIFFGWLVARVLLFVYMFYHVYLHYDQVKQMHIF 240

Query: 241 GYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKRQ 275
           G+ LVF+VP VL IMN+MWFGKI+KGLKKTL KRQ
Sbjct: 241 GFFLVFMVPAVLGIMNLMWFGKIIKGLKKTLTKRQ 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085343|emb|CBI29075.3| unnamed protein product [Vitis vinifera]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/266 (80%), Positives = 243/266 (91%)

Query: 10  AIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQ 69
           AIK+YQNQA+ LVK+Y++ADPFIPYTSIL+GL ACK+VYDLTQLISTFYFK+Y GLTKIQ
Sbjct: 2   AIKAYQNQAEQLVKDYLLADPFIPYTSILSGLFACKMVYDLTQLISTFYFKSYAGLTKIQ 61

Query: 70  RMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFL 129
           R+EWNNR +STVHA FI ALSLY+VFWSDLFSD +  G +TFRSS LS FGLGVSVGYFL
Sbjct: 62  RIEWNNRSMSTVHAFFIAALSLYFVFWSDLFSDHRLAGLVTFRSSPLSTFGLGVSVGYFL 121

Query: 130 ADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWY 189
           AD+GMIFWLYPSLGG+EY+VHHSLS IAVAY+M SGEGQLYTYMVLISEVTTPEINMRWY
Sbjct: 122 ADIGMIFWLYPSLGGIEYIVHHSLSAIAVAYAMMSGEGQLYTYMVLISEVTTPEINMRWY 181

Query: 190 LDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYLLVFVVP 249
           LDTAGMKRS+ YL+NG++IFF WL+AR+LLFVYMFYHVYLHYDQV +MH  G+ LVF+VP
Sbjct: 182 LDTAGMKRSSAYLINGIVIFFGWLVARVLLFVYMFYHVYLHYDQVKQMHIFGFFLVFMVP 241

Query: 250 FVLAIMNVMWFGKILKGLKKTLAKRQ 275
            VL IMN+MWFGKI+KGLKKTL KRQ
Sbjct: 242 AVLGIMNLMWFGKIIKGLKKTLTKRQ 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487670|ref|XP_004157742.1| PREDICTED: transmembrane protein 56-B-like [Cucumis sativus]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/274 (77%), Positives = 248/274 (90%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           MAMS +TV AIKSYQ+QA  LVKNY++AD F+P+TS+L G+LACK+VYDLTQL+S FYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADHFVPFTSVLGGMLACKLVYDLTQLVSNFYFK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           +Y GLTKIQR+EWNNRG+ST HAI+I+ +SLY+VFWSDLFSDQ+H G +TF+SS LS F 
Sbjct: 61  SYVGLTKIQRVEWNNRGMSTFHAIYISIMSLYFVFWSDLFSDQRHPGLVTFQSSTLSTFI 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LG+SVGYFLADLG+I WLYPSLGGMEYVVHH+LSG+AVAYS+FSGEGQLYTYMVLISE+T
Sbjct: 121 LGISVGYFLADLGLIVWLYPSLGGMEYVVHHTLSGLAVAYSVFSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAI 240
           TPEINMRWYLDTAGMKRS  YL+NG++IFFAWLIARILLF Y FYHVYLHYDQV++MH I
Sbjct: 181 TPEINMRWYLDTAGMKRSCAYLINGIVIFFAWLIARILLFGYTFYHVYLHYDQVIKMHVI 240

Query: 241 GYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKR 274
           GYLLVF VP VL +MN+MWF KI+KGL KT++KR
Sbjct: 241 GYLLVFGVPTVLGMMNLMWFAKIVKGLMKTISKR 274

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455419|ref|XP_004145450.1| PREDICTED: transmembrane protein 56-B-like [Cucumis sativus]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/274 (77%), Positives = 248/274 (90%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           MAMS +TV AIKSYQ+QA  LVKNY++AD F+P+TS+L G+LACK+VYDLTQL+S FYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADHFVPFTSVLGGMLACKLVYDLTQLVSNFYFK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           +Y GLTKIQR+EWNNRG+ST HAI+I+ +SLY+VFWSDLFSDQ+H G +TF+SS LS F 
Sbjct: 61  SYLGLTKIQRVEWNNRGMSTFHAIYISIMSLYFVFWSDLFSDQRHPGLVTFQSSTLSTFI 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LG+SVGYFLADLG+I WLYPSLGGMEYVVHH+LSG+AVAYS+FSGEGQLYTYMVLISE+T
Sbjct: 121 LGISVGYFLADLGLIVWLYPSLGGMEYVVHHTLSGLAVAYSVFSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAI 240
           TPEINMRWYLDTAGMKRS  YL+NG++IFFAWLIARILLF Y FYHVYLHYDQV++MH I
Sbjct: 181 TPEINMRWYLDTAGMKRSCAYLINGIVIFFAWLIARILLFGYTFYHVYLHYDQVIKMHVI 240

Query: 241 GYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKR 274
           GYLLVF VP VL +MN+MWF KI+KGL KT++KR
Sbjct: 241 GYLLVFGVPTVLGMMNLMWFAKIVKGLMKTISKR 274

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136440|ref|XP_002322330.1| predicted protein [Populus trichocarpa] gi|222869326|gb|EEF06457.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 213/275 (77%), Positives = 239/275 (86%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           MAMS +T  AIKSYQNQA+ LVKNY++ADPFIPYTS+L G+ ACKV YDLTQLISTFY K
Sbjct: 1   MAMSTETAMAIKSYQNQAEALVKNYLLADPFIPYTSVLGGIFACKVAYDLTQLISTFYIK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
            YNGLTKIQR+EWNNRG+ST+HA+FITA+SLY+VFWSDLFSD QHTG +T RSS  S  G
Sbjct: 61  TYNGLTKIQRIEWNNRGMSTIHAVFITAMSLYFVFWSDLFSDHQHTGIVTLRSSQFSIVG 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LGVSVGYF ADLGMIF  YP+LGG EYV+HHSLS IAVAYSM SGE QLYTYM LISEVT
Sbjct: 121 LGVSVGYFFADLGMIFLYYPTLGGKEYVIHHSLSTIAVAYSMLSGEMQLYTYMCLISEVT 180

Query: 181 TPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAI 240
           TPEINMRWYLDTAG KRS  YL+NG+ IF AWL+ARILLF+YMF+H+YLHYDQV++M   
Sbjct: 181 TPEINMRWYLDTAGHKRSAAYLINGLAIFLAWLMARILLFLYMFHHIYLHYDQVIQMSLF 240

Query: 241 GYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKRQ 275
           G  LVF+VP VL IMN+MWFGKI+KGLKKTLAKRQ
Sbjct: 241 GCFLVFLVPAVLFIMNLMWFGKIIKGLKKTLAKRQ 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115498|ref|XP_002332149.1| predicted protein [Populus trichocarpa] gi|222875199|gb|EEF12330.1| predicted protein [Populus trichocarpa]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/274 (76%), Positives = 240/274 (87%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           MA+S +TV AIK+YQNQA+ LVKNY++ADPFIPYTS+L G+ ACKV YDLTQLISTFY K
Sbjct: 1   MAVSTETVMAIKTYQNQAEALVKNYLLADPFIPYTSVLGGIFACKVAYDLTQLISTFYIK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           AYNGLTK+QR+EWNNRG+ST+HAIFITA+SLY+VFWSDLFSDQ+HTG +T RSS LS  G
Sbjct: 61  AYNGLTKLQRIEWNNRGMSTIHAIFITAMSLYFVFWSDLFSDQRHTGLVTLRSSQLSIVG 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LGVS+GYF  D GMIF  YP+LGG EYV+HHSLS IAVAYSM SGE QLYTYM LISEVT
Sbjct: 121 LGVSIGYFFVDFGMIFLYYPTLGGKEYVIHHSLSTIAVAYSMLSGELQLYTYMCLISEVT 180

Query: 181 TPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAI 240
           TPEINMRWYLDTAG+KRS  YL+NG+ IF AWL+ARILLF+Y+FYH+YLHYDQV++M   
Sbjct: 181 TPEINMRWYLDTAGLKRSAAYLINGLAIFLAWLMARILLFLYLFYHIYLHYDQVIQMSLF 240

Query: 241 GYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKR 274
           G LL F+VP VL IMN+MWFGKI+KGLKK LAKR
Sbjct: 241 GCLLTFLVPAVLFIMNLMWFGKIIKGLKKALAKR 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550713|ref|XP_002516405.1| conserved hypothetical protein [Ricinus communis] gi|223544440|gb|EEF45960.1| conserved hypothetical protein [Ricinus communis]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/275 (77%), Positives = 241/275 (87%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           M +S++TV  IKSYQ+QAQVLVKNY++A PFIPYTS+L GL+A KV YDL+QLISTFY K
Sbjct: 1   MTVSKETVMTIKSYQSQAQVLVKNYLLASPFIPYTSVLGGLVASKVAYDLSQLISTFYIK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           AY GLTK+QR+EWNNRG+S++HAIFITA SLY+VFWSDLFSDQ  T  +T RSS LS FG
Sbjct: 61  AYAGLTKMQRIEWNNRGMSSIHAIFITAASLYFVFWSDLFSDQLPTDLVTLRSSPLSIFG 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LGVSVGYF ADLGMI W YPSLGGMEYV+HHSLS IAVAYSMFSGEGQLYTYM LISEVT
Sbjct: 121 LGVSVGYFFADLGMIIWFYPSLGGMEYVIHHSLSAIAVAYSMFSGEGQLYTYMCLISEVT 180

Query: 181 TPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAI 240
           TP+INMRWYLDTAGMKRS  YL+NGV+IFFAWLIAR+LLF+Y+F+H+YLHYDQV++M   
Sbjct: 181 TPKINMRWYLDTAGMKRSIAYLINGVLIFFAWLIARVLLFIYIFHHIYLHYDQVIQMSPF 240

Query: 241 GYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKRQ 275
           G L+VFVVP  L IMN+MWF KI KGL KTLAKRQ
Sbjct: 241 GCLVVFVVPSALFIMNLMWFAKIFKGLMKTLAKRQ 275

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851934|ref|XP_002893848.1| hypothetical protein ARALYDRAFT_473644 [Arabidopsis lyrata subsp. lyrata] gi|297339690|gb|EFH70107.1| hypothetical protein ARALYDRAFT_473644 [Arabidopsis lyrata subsp. lyrata]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/271 (74%), Positives = 236/271 (87%)

Query: 4   SEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYN 63
           S QT+ AIKSY +QAQ LVKNY++ADPFIPYTS+L G+  CKVVYDL   IS  + K Y 
Sbjct: 5   SLQTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYI 64

Query: 64  GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGV 123
            LTKIQR+EWNNRGISTVHAIFI+ALSLY+VFWSDLFSD+ H   + FRSS LS+ GLG+
Sbjct: 65  ILTKIQRIEWNNRGISTVHAIFISALSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGI 124

Query: 124 SVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPE 183
           S+GYFLADLGMIFW YPSLGG+EY+VHHSLSG+AVAYS+FSGEGQLYTYMVLISE+TTPE
Sbjct: 125 SIGYFLADLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPE 184

Query: 184 INMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYL 243
           IN+RWYLDTAGMK+S  Y+VNGV IF AWL+ARILLF+YMFYHVYLHY+QV+ MH  GY+
Sbjct: 185 INLRWYLDTAGMKKSLAYVVNGVFIFLAWLVARILLFIYMFYHVYLHYNQVMRMHIFGYV 244

Query: 244 LVFVVPFVLAIMNVMWFGKILKGLKKTLAKR 274
           LVF VP  L +MN++WFGKI++G+KKTLAKR
Sbjct: 245 LVFGVPAALGVMNLIWFGKIVRGVKKTLAKR 275

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397885|ref|NP_564377.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] gi|79319015|ref|NP_001031121.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] gi|16604308|gb|AAL24160.1| At1g31300/T19E23_12 [Arabidopsis thaliana] gi|20466069|gb|AAM19956.1| At1g31300/T19E23_12 [Arabidopsis thaliana] gi|332193216|gb|AEE31337.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] gi|332193217|gb|AEE31338.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/271 (74%), Positives = 236/271 (87%)

Query: 4   SEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYN 63
           S QT+ AIKSY +QAQ LVKNY++ADPFIPYTS+L G+  CKVVYDL   IS  + K Y 
Sbjct: 5   SLQTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYI 64

Query: 64  GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGV 123
            LTKIQR+EWNNRGISTVHAIFI+A+SLY+VFWSDLFSD+ H   + FRSS LS+ GLG+
Sbjct: 65  ILTKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGI 124

Query: 124 SVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPE 183
           S+GYFLADLGMIFW YPSLGG+EY+VHHSLSG+AVAYS+FSGEGQLYTYMVLISE+TTPE
Sbjct: 125 SIGYFLADLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPE 184

Query: 184 INMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYL 243
           IN+RWYLDTAGMK+S  Y+VNGV IF AWL+ARILLF+YMFYHVYLHY+QV+ MH  GY+
Sbjct: 185 INLRWYLDTAGMKKSLAYVVNGVFIFLAWLVARILLFIYMFYHVYLHYNQVMRMHIFGYV 244

Query: 244 LVFVVPFVLAIMNVMWFGKILKGLKKTLAKR 274
           LVF VP  L +MN++WFGKI++G+KKTLAKR
Sbjct: 245 LVFGVPAALGVMNLIWFGKIVRGVKKTLAKR 275

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222423958|dbj|BAH19941.1| AT1G31300 [Arabidopsis thaliana]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/271 (73%), Positives = 235/271 (86%)

Query: 4   SEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYN 63
           S QT+ AIKSY +QAQ LVKNY++ADPFIPYTS+L G+  CKVVYDL   IS  + K Y 
Sbjct: 5   SLQTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYI 64

Query: 64  GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGV 123
            LTKIQR+EWNNRGISTVHAIFI+A+SLY+VFWSDLFSD+ H   + FRSS LS+ GLG+
Sbjct: 65  ILTKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGI 124

Query: 124 SVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPE 183
           S+GYFLADLGMIF  YPSLGG+EY+VHHSLSG+AVAYS+FSGEGQLYTYMVLISE+TTPE
Sbjct: 125 SIGYFLADLGMIFRKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPE 184

Query: 184 INMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYL 243
           IN+RWYLDTAGMK+S  Y+VNGV IF AWL+ARILLF+YMFYHVYLHY+QV+ MH  GY+
Sbjct: 185 INLRWYLDTAGMKKSLAYVVNGVFIFLAWLVARILLFIYMFYHVYLHYNQVMRMHIFGYV 244

Query: 244 LVFVVPFVLAIMNVMWFGKILKGLKKTLAKR 274
           LVF VP  L +MN++WFGKI++G+KKTLAKR
Sbjct: 245 LVFGVPAALGVMNLIWFGKIVRGVKKTLAKR 275

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2197480	278	AT1G31300 "AT1G31300" [Arabido	0.985	0.974	0.741	7.6e-112
TAIR|locus:504955499	268	AT4G19645 "AT4G19645" [Arabido	0.963	0.988	0.740	4.3e-109
TAIR|locus:2122814	266	AT4G10360 "AT4G10360" [Arabido	0.865	0.894	0.495	2e-65
ZFIN|ZDB-GENE-070912-350	263	si:dkey-10f21.4 "si:dkey-10f21	0.727	0.760	0.311	4.8e-23
RGD|1563041	263	Tmem56 "transmembrane protein	0.847	0.885	0.255	4.3e-22
MGI|MGI:1923195	276	Tmem56 "transmembrane protein	0.836	0.833	0.251	3e-21
ZFIN|ZDB-GENE-090402-1	276	tmem56a "transmembrane protein	0.727	0.724	0.300	3.9e-21
UNIPROTKB|F1NSV0	261	TMEM56 "Uncharacterized protei	0.778	0.819	0.25	3.5e-20
UNIPROTKB|Q96MV1	263	TMEM56 "Transmembrane protein	0.734	0.768	0.293	1.9e-19
ZFIN|ZDB-GENE-041010-90	264	tmem56b "transmembrane protein	0.789	0.821	0.253	8.3e-19

TAIR|locus:2197480 AT1G31300 "AT1G31300" [Arabidopsis thaliana (taxid:3702)]

 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 201/271 (74%), Positives = 236/271 (87%)

Query:     4 SEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYN 63
             S QT+ AIKSY +QAQ LVKNY++ADPFIPYTS+L G+  CKVVYDL   IS  + K Y 
Sbjct:     5 SLQTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYI 64

Query:    64 GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGV 123
              LTKIQR+EWNNRGISTVHAIFI+A+SLY+VFWSDLFSD+ H   + FRSS LS+ GLG+
Sbjct:    65 ILTKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGI 124

Query:   124 SVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPE 183
             S+GYFLADLGMIFW YPSLGG+EY+VHHSLSG+AVAYS+FSGEGQLYTYMVLISE+TTPE
Sbjct:   125 SIGYFLADLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPE 184

Query:   184 INMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYL 243
             IN+RWYLDTAGMK+S  Y+VNGV IF AWL+ARILLF+YMFYHVYLHY+QV+ MH  GY+
Sbjct:   185 INLRWYLDTAGMKKSLAYVVNGVFIFLAWLVARILLFIYMFYHVYLHYNQVMRMHIFGYV 244

Query:   244 LVFVVPFVLAIMNVMWFGKILKGLKKTLAKR 274
             LVF VP  L +MN++WFGKI++G+KKTLAKR
Sbjct:   245 LVFGVPAALGVMNLIWFGKIVRGVKKTLAKR 275

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:504955499 AT4G19645 "AT4G19645" [Arabidopsis thaliana (taxid:3702)]

 Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
 Identities = 197/266 (74%), Positives = 233/266 (87%)

Query:    11 IKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQR 70
             IKSYQNQA+  V++Y++ADPF+PYTS+L G+  CK+VYDLT+L S+ + K+Y+ LTKI+R
Sbjct:     3 IKSYQNQAEYFVEHYLLADPFLPYTSVLVGICLCKLVYDLTELFSSIHVKSYSALTKIKR 62

Query:    71 MEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPIT-FRSSWLSNFGLGVSVGYFL 129
             +EWNNRGISTVHAIFI+ ++LY+ F+SDLFSDQ+    +T FR+S LS FGLGVSVGYFL
Sbjct:    63 IEWNNRGISTVHAIFISFMALYFAFFSDLFSDQRSLETLTVFRNSPLSTFGLGVSVGYFL 122

Query:   130 ADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWY 189
             ADLGMIFWLYPSLGG EY++HH LSG AVAYS+FSGE QLYTYMVLISEVTTPEIN+RWY
Sbjct:   123 ADLGMIFWLYPSLGGSEYILHHCLSGTAVAYSLFSGEAQLYTYMVLISEVTTPEINLRWY 182

Query:   190 LDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYLLVFVVP 249
             LD AG+KRS  YLVNGV IFFAWL ARILLF+YMFYHVY HYDQV+EMH  GYLLVFVVP
Sbjct:   183 LDIAGLKRSKAYLVNGVAIFFAWLTARILLFIYMFYHVYTHYDQVIEMHTFGYLLVFVVP 242

Query:   250 FVLAIMNVMWFGKILKGLKKTLAKRQ 275
               L++MN++WFGKI+KGLKKTL KRQ
Sbjct:   243 ISLSVMNLIWFGKIVKGLKKTLEKRQ 268

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2122814 AT4G10360 "AT4G10360" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 118/238 (49%), Positives = 164/238 (68%)

Query:    36 SILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVF 95
             SI +G L CK+VYDLT+ IS   F  Y  L    RMEWNNRG ST HA+F +  S+Y++ 
Sbjct:    20 SICSGALMCKIVYDLTRFISPLLFSVYGKLDSKVRMEWNNRGFSTFHAVFTSVASIYFLV 79

Query:    96 WSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSG 155
              SD F +  H   +   ++ LS   +G+S+GYFLADL MIFW +P+LGG+EYV HH LS 
Sbjct:    80 ISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWYFPTLGGIEYVFHHFLSM 139

Query:   156 IAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIA 215
              A+  S+ SG+ Q Y ++VL+SE TTP +N+RWYLD +G K S  Y +NG+ +F  WL+A
Sbjct:   140 FAIILSVTSGQSQFYIFLVLLSEATTPFVNLRWYLDNSGQKGSKAYTLNGIALFLGWLVA 199

Query:   216 RILLFVYMFYHVYLHYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAK 273
             R+LLF++ F H+YLH+ QV ++  +G+  +  +P  LA+MN++WF KI KGL KTL+K
Sbjct:   200 RVLLFIFFFVHMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLLWFWKITKGLIKTLSK 257

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-070912-350 si:dkey-10f21.4 "si:dkey-10f21.4" [Danio rerio (taxid:7955)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 66/212 (31%), Positives = 110/212 (51%)

Query:    65 LTKIQRMEWNNRGISTVHAIFITALSLY-YVFWSDLFSDQQHTGPITFRSSWLSNFGLGV 123
             L+  Q+ EWN+R +STVHA+ +    LY Y+F   +  D     P+ +  + L    + V
Sbjct:    41 LSPTQKTEWNSRAVSTVHALVVGLFCLYIYIFDESIQKD-----PV-WGDATLVKLNVAV 94

Query:   124 SVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPE 183
             + GY ++DL ++F  + S+G   +V+HH  +  A  Y +  G    +    L+SE +TP 
Sbjct:    95 TSGYLMSDLLLMFTSWESIGEKYFVIHHFAALYAYYYVLSQGILPYFANFRLLSEFSTPF 154

Query:   184 INMRWYLDTAGM-KRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHY--DQVVEMHAI 240
             +N RW+    G  K S   L+NGV + F + + RI +    + H+Y  +  D    +  I
Sbjct:   155 VNQRWFFHMLGYHKLSKPSLLNGVAMAFTFFLVRIAVIPGYYSHMYSVFGTDDFYRL-PI 213

Query:   241 GYLLVFVVPFV-LAIMNVMWFGKILKGLKKTL 271
             G    +V+  V L +MN+MW  +I++G  K L
Sbjct:   214 GARCAWVISSVSLDVMNIMWMRRIIRGCLKVL 245

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1563041 Tmem56 "transmembrane protein 56" [Rattus norvegicus (taxid:10116)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 63/247 (25%), Positives = 123/247 (49%)

Query:    35 TSILAGLLACK-VVYDLTQLISTFYFKA-----YNGLTKIQRMEWNNRGISTVHAIFITA 88
             T+++ G + C  V + L     + +F A     YN L+  +++EWN+R +ST H++ +  
Sbjct:     5 TNVVIGTVCCSFVTFQLLFHFISCWFSARVSLGYNSLSTEKKIEWNSRVVSTCHSMLVGI 64

Query:    89 LSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYV 148
               LY  F    F +     P+    S L    +  + GY ++DL +I + +  +G   ++
Sbjct:    65 FGLYLFF----FDEATIADPLWGDPS-LVKINISTASGYLISDLLIILFNWKVIGDKFFI 119

Query:   149 VHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGM-KRSTTYLVNGVI 207
             +HH    IA  + +  G         L++E+++P +N RW+ +     K S   ++NG++
Sbjct:   120 IHHCAGLIAYYFVLKIGVLAYIANFRLLAELSSPFVNQRWFFEVLKYPKFSKVNVINGIL 179

Query:   208 IFFAWLIARILLFVYMFYHVYLHY--DQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILK 265
             +   + I RI+    M+++VY  Y  +  + + ++ + +      VL +MN+MW  KI K
Sbjct:   180 MTVVFFIVRIIAIPPMYFYVYSVYGTEPYIRLGSVVHFVWISSCIVLDVMNIMWMIKITK 239

Query:   266 GLKKTLA 272
             G  K ++
Sbjct:   240 GCMKVIS 246

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1923195 Tmem56 "transmembrane protein 56" [Mus musculus (taxid:10090)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 62/247 (25%), Positives = 129/247 (52%)

Query:    36 SILAGLLACKVVYDLTQLISTFYFKA-----YNGLTKIQRMEWNNRGISTVHAIFITALS 90
             +++  + +  VV+ +     +++F A     YN L+  +++EWN+R +ST H++ +    
Sbjct:    20 AVICTVCSSFVVFQILFHFVSYWFSARVSSGYNSLSIDKKIEWNSRVVSTCHSLLVGIFG 79

Query:    91 LYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVH 150
             LY  F    F +   T P+    +++ N  +  + GY ++DL +I + +  +G   +++H
Sbjct:    80 LYLFF----FDEATITDPLWGDPTYV-NINIATASGYLISDLLIILFNWKVIGDKFFIIH 134

Query:   151 HSLSGIAVAYSMFSGEGQLY-TYMVLISEVTTPEINMRWYLDTAGM-KRSTTYLVNGVII 208
             H  +G+   Y + +     Y     L++E+++P +N RW+ +     K S   ++NG+++
Sbjct:   135 HC-AGLTAYYFVLTTGALAYIANFRLLAELSSPFVNQRWFFEALKYPKFSKANVINGILM 193

Query:   209 FFAWLIARILLFVYMFYHVYLHYDQVVEMHAIGYLL--VFVVPFV-LAIMNVMWFGKILK 265
                + I RI+    M++ +Y  Y     +   G+++  V++V  V L +MN+MW  KI K
Sbjct:   194 TVVFFIVRIISIPPMYFFLYSVYGTEPYIR-FGFVIQSVWIVTCVILDVMNIMWMIKITK 252

Query:   266 GLKKTLA 272
             G  K ++
Sbjct:   253 GCIKVIS 259

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-090402-1 tmem56a "transmembrane protein 56a" [Danio rerio (taxid:7955)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 64/213 (30%), Positives = 110/213 (51%)

Query:    65 LTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVS 124
             LT  Q++EWN+R +ST+HA+ +    LY +F+ +  +     G  T     L    + ++
Sbjct:    54 LTHKQKIEWNSRTVSTLHALLVGLFCLYILFFDEAVNQDPVWGDPT-----LVKINVSIT 108

Query:   125 VGYFL-ADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL--YTYMVLISEVTT 181
              GY + ADL +IF+ + ++G   +V+HH L+ +  AY    G+G L  +    L++E +T
Sbjct:   109 TGYLISADLLLIFYYWRAIGDKFFVIHH-LAAL-YAYYYVLGQGMLPYFANFRLLAEFST 166

Query:   182 PEINMRWYLDTAGM-KRSTTYLVNGVIIFFAWLIARILLF-VYMFYHVYLHYDQVVEMHA 239
             P +N RW+ +  G  K S   + NGV++   + + RI +  VY      ++  +     +
Sbjct:   167 PCVNQRWFFEVLGYPKSSRPNMANGVLMAAVFFLVRIAVMPVYYSRMCSVYGTEAFYRVS 226

Query:   240 IGYLLVFVVPFV-LAIMNVMWFGKILKGLKKTL 271
              G    ++   + L IMNVMW  KI +G  K L
Sbjct:   227 FGGRSAWIFSSICLDIMNVMWMHKIFRGCYKVL 259

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1NSV0 TMEM56 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 57/228 (25%), Positives = 116/228 (50%)

Query:    50 LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPI 109
             L+  +ST     ++ L++ +++EWN+R +ST HA+ +    LY + + +  +     G  
Sbjct:    25 LSSWVSTRITPGFSNLSQKRKIEWNSRTVSTFHALVVGGFCLYILLYDEAVNADHLWGDP 84

Query:   110 TFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL 169
             +     +    + ++ GY ++DL +I   + ++G   +V+HH L+ +   Y + S +G L
Sbjct:    85 S-----IVKLNIAITTGYLISDLLLIICYWKAIGDKFFVIHH-LAALYAYYFVLS-KGLL 137

Query:   170 YTY--MVLISEVTTPEINMRWYLDTAGM-KRSTTYLVNGVIIFFAWLIARILLFVYMFYH 226
               +    L++E +TP +N RW+ +  G  K S   ++NGV++   + + RI +    +  
Sbjct:   138 AYFGNFRLLAEFSTPFVNQRWFFEVLGYPKSSKANMINGVLMTVVFFVVRIAVMPMYYSR 197

Query:   227 VYLHYDQVVEMHAIGYLL--VFVVP-FVLAIMNVMWFGKILKGLKKTL 271
             V+  +        +G+     +++   VL +MN+MW  KI KG  K +
Sbjct:   198 VFSSFG-TEGFQRLGFAAQSAWIISSIVLDVMNLMWMVKITKGCYKVI 244

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q96MV1 TMEM56 "Transmembrane protein 56" [Homo sapiens (taxid:9606)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 64/218 (29%), Positives = 114/218 (52%)

Query:    62 YNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGL 121
             +N L+  +++EWN+R +ST H++ +    LY +F   LF +     P+    S L+N  +
Sbjct:    38 FNSLSFKKKIEWNSRVVSTCHSLVVGIFGLY-IF---LFDEATKADPLWGGPS-LANVNI 92

Query:   122 GVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMV---LISE 178
              ++ GY ++DL +I   +  +G   +++HH  S    AY +    G L  Y+    L++E
Sbjct:    93 AIASGYLISDLSIIILYWKVIGDKFFIMHHCAS--LYAYYLVLKNGVL-AYIGNFRLLAE 149

Query:   179 VTTPEINMRWYLDTAGM-KRSTTYLVNGVIIFFAWLIARI--LLFVYMF-YHVYLHYDQV 234
             +++P +N RW+ +     K S   ++NG+++   + I RI  +L  Y F Y VY   +  
Sbjct:   150 LSSPFVNQRWFFEALKYPKFSKAIVINGILMTVVFFIVRIASMLPHYGFMYSVY-GTEPY 208

Query:   235 VEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLA 272
             + +  +  L   +   VL +MNVMW  KI KG  K ++
Sbjct:   209 IRLGVLIQLSWVISCVVLDVMNVMWMIKISKGCIKVIS 246

GO:0016021 "integral to membrane" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-041010-90 tmem56b "transmembrane protein 56b" [Danio rerio (taxid:7955)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 57/225 (25%), Positives = 111/225 (49%)

Query:    50 LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPI 109
             ++ ++S+ + + Y  L   +  +WN+R +STVHA+ I  L   Y+ W D   D  +  P+
Sbjct:    23 VSPVLSSNFTQGYGKLPPNKLNDWNSRLVSTVHAL-IVGLFCLYILWYD---DAVNEDPV 78

Query:   110 TFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL 169
              +    L    + ++ GY   DL ++   + ++G + +V HH  +  A  Y +  G    
Sbjct:    79 -WGDPNLVKLNVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPY 137

Query:   170 YTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLV-NGVIIFFAWLIARILLFVYMFYHVY 228
             +    LISE++TP +N RW+ +     R+   +V NG+ +   + + RI +    +  V+
Sbjct:   138 FANFRLISELSTPFVNQRWFFEALAYPRTHQLVVANGIAMAVVFFLVRIAVMPPYWAKVF 197

Query:   229 -LHYDQVVEMHAIGYLLVFVVPFV-LAIMNVMWFGKILKGLKKTL 271
              + Y    E   +   + +++  V L I+N++W  KI +G  K +
Sbjct:   198 GIIYSPTFEKLGLAIQVAWIISCVCLDILNIIWMYKIARGCYKVI 242

GO:0016021 "integral to membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
smart00724	205	smart00724, TLC, TRAM, LAG1 and CLN8 homology doma	2e-33
pfam03798	198	pfam03798, TRAM_LAG1_CLN8, TLC domain	9e-25

>gnl|CDD|214789 smart00724, TLC, TRAM, LAG1 and CLN8 homology domains

 Score =  120 bits (303), Expect = 2e-33
 Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 8/206 (3%)

Query: 70  RMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFL 129
             E +NR +S +H++     +LY   W    SD +   PI    S L+ F    S+GYF+
Sbjct: 3   FNESSNRLVSYLHSVIAGLYALYSEPW---LSDPKSLYPI-QGMSPLAKFYYLFSLGYFI 58

Query: 130 ADLGMIFWLYPSLGGM--EYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMR 187
            DL  +            E +VHH  + + ++ S      +L   ++L+ E++ P +++R
Sbjct: 59  HDLVALLLFQDLKRKDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLR 118

Query: 188 WYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVV--EMHAIGYLLV 245
             L+ AG K+S  Y VN V+    + + R++LF ++   V +HY Q        + YLL 
Sbjct: 119 KLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLILTVTVHYAQAESGLFPPLLYLLF 178

Query: 246 FVVPFVLAIMNVMWFGKILKGLKKTL 271
            ++   L ++N+ WF  IL+  +K L
Sbjct: 179 LLLLLCLQLLNIYWFFLILRMARKLL 204

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains. Length = 205

>gnl|CDD|217735 pfam03798, TRAM_LAG1_CLN8, TLC domain

 Score = 97.7 bits (244), Expect = 9e-25
 Identities = 45/201 (22%), Positives = 96/201 (47%), Gaps = 10/201 (4%)

Query: 72  EWNNRGISTVHAIFITALSLYYVFWSDLFSDQQ-----HTGPITFRSSWLSNFGLGVSVG 126
           ++N RG+S VH +    L LY +     F +       +   I   +S L  F   + +G
Sbjct: 1   KFNERGVSLVHYLVSGILGLYVLLSEPWFWNPTWLWYPYPDRILGGTSALVKFYYLIQLG 60

Query: 127 YFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINM 186
           YFL DL ++ +        E ++HH ++ + +++S F    ++   ++L+ E++ P +++
Sbjct: 61  YFLHDLLVLLFYEKRRKW-EMLLHHIITLLLISFSYFYNFTRVGLLVLLLHELSDPFLHL 119

Query: 187 RWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHYDQVVEMHA--IGYLL 244
           R +L+  G K+S   L   V+   ++ + R++L  ++     L   ++         Y +
Sbjct: 120 RKFLNYLGKKKSCDVLF--VLFLVSFFLVRLVLGPFLILLSILDEARLDIPGGPFNLYYI 177

Query: 245 VFVVPFVLAIMNVMWFGKILK 265
              +  VL ++N+ WF  I++
Sbjct: 178 FLALLLVLQLLNIYWFYLIIR 198

Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
KOG4561	281	consensus Uncharacterized conserved protein, conta	100.0
smart00724	205	TLC TRAM, LAG1 and CLN8 homology domains. Protein	100.0
PF03798	198	TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TL	100.0
KOG4474	253	consensus Uncharacterized conserved protein [Funct	99.95
KOG1607	318	consensus Protein transporter of the TRAM (translo	99.42
COG5058	395	LAG1 Protein transporter of the TRAM (translocatin	99.28
PF14018	75	DUF4234: Domain of unknown function (DUF4234)	82.91

>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=1.5e-46  Score=330.38  Aligned_cols=263  Identities=34%  Similarity=0.577  Sum_probs=225.2

Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCcccHHHHHHHHHHHHHHHHHH---HHhHhhhhhccCCCCcchhhhhe-hhhhHHHH
Q 023889            7 TVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLT---QLISTFYFKAYNGLTKIQRMEWN-NRGISTVH   82 (275)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~v~~ls---~~ls~~~~k~y~~l~~~~r~~w~-~r~vS~vH   82 (275)
                      +|..+++...+.++++.+...+++.+..+....++++|+.+|.++   +..+....++|.++++++|++|| +|+||++|
T Consensus         2 ~i~~~~~~~~~~s~~v~~~~~~~~~~~l~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~~~l~~k~~i~wn~~~~Vs~~h   81 (281)
T KOG4561|consen    2 VIPMLPARIGLTSELVKLSLGAIFFVLLTAHCHGILFYFVVYQLCNVIHNISVSLSHTYRSLDKKLKIEWNCVRVVSTVH   81 (281)
T ss_pred             CCCCCCCcccccchhhhhccchHHHHHHHHHHHHHHHHhhhhhhhceehheeehhhhhHhhhcCcEEEEEecCceeeeeh
Confidence            455677788888999999999999999999999999999999988   77777777999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHhcCCCC-CcCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHH
Q 023889           83 AIFITALSLYYVFWSDLFS-DQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYS  161 (275)
Q Consensus        83 a~v~~~~~~~~l~~~~~~~-~~~~~d~i~~~~s~~~~~~~~is~GYFl~Dl~~~~~~~~~~~~~~~l~HH~v~l~~~~~~  161 (275)
                      +++++  ++|+++.++.+. |+...+...++.+......    .|||++|+..+.++++..+|.+|++||++++......
T Consensus        82 slv~~--s~y~lf~~~~f~yD~~~~~~~~~~~~~~~~~g----~gy~i~dl~~i~~~~~~~~~~~fviHh~~s~~~v~~~  155 (281)
T KOG4561|consen   82 SLVSS--SLYFLFGTPYFHYDKATGYSVVWSKHRDTSVG----IGYFIPDLTWIIVRYFVLGGIEFVIHHIASLVFVGCL  155 (281)
T ss_pred             Hhhhc--ccceeecCcccchhhhhccceeecceeecccc----ceEecccceeEEEEeeeecCeeEEeeHHHHhhhheee
Confidence            99988  899998877665 5555443334433333222    5699999986666788899999999999984444444


Q ss_pred             HhcCcchhhHHHHHHHhccchhhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh--hhhhhhhH
Q 023889          162 MFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHY--DQVVEMHA  239 (275)
Q Consensus       162 ~~~~~~~~~~~~~Ll~ElStpFLn~Rw~l~~~g~~~s~~~~~n~~~~~~~Ff~~Ri~~~~~~~~~~~~~~--~~~~~~~~  239 (275)
                      ...|.+++++..+|+.|+||||+|+||+++++|+|+|++|.+||++++++|+++||+..|+++++++.++  .+.+++++
T Consensus       156 ~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~~~~~~~~~~~~~~~~~~~~  235 (281)
T KOG4561|consen  156 LRRGVGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPYMGWHYYWRYQGLVLNQVPP  235 (281)
T ss_pred             EecCccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhch
Confidence            5678899999999999999999999999999999999999999999999999999998889988877443  45567778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 023889          240 IGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKRQ  275 (275)
Q Consensus       240 ~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~~~~  275 (275)
                      .....+++++++++++|++||+||+|+++|.++|+|
T Consensus       236 ~~~~~~l~~~~~L~v~Nl~Wf~km~~ga~K~~~~~~  271 (281)
T KOG4561|consen  236 FLPLFLLGLNALLLVLNLYWFSKMVRGALKVLKKAK  271 (281)
T ss_pred             hHhHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccc
Confidence            888889999999999999999999999999998854

>smart00724 TLC TRAM, LAG1 and CLN8 homology domains

Probab=100.00  E-value=2.6e-34  Score=246.83  Aligned_cols=201  Identities=29%  Similarity=0.434  Sum_probs=170.3

Q ss_pred             chhhhhehhhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHhcccCC--Ch
Q 023889           68 IQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLG--GM  145 (275)
Q Consensus        68 ~~r~~w~~r~vS~vHa~v~~~~~~~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~is~GYFl~Dl~~~~~~~~~~~--~~  145 (275)
                      +|+.||++|++|.+||++++..+++....   ++|+..+||. .+.++..+...++++|||++|+.++..+++..+  ++
T Consensus         1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~---~~~~~~~~p~-~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~   76 (205)
T smart00724        1 SKFNESSNRLVSYLHSVIAGLYALYSEPW---LSDPKSLYPI-QGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFK   76 (205)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhccCCc---ccCCcccCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence            47899999999999999999888876542   1222233555 568999999999999999999999986555444  79


Q ss_pred             hHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHhccchhhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 023889          146 EYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFY  225 (275)
Q Consensus       146 ~~l~HH~v~l~~~~~~~~~~~~~~~~~~~Ll~ElStpFLn~Rw~l~~~g~~~s~~~~~n~~~~~~~Ff~~Ri~~~~~~~~  225 (275)
                      +|++||++++.++..+...+....++..++++|+||||+|+||++++.|+++++.+..|+.+++++|+++|++.+|+..+
T Consensus        77 ~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p~~~~  156 (205)
T smart00724       77 EMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLIL  156 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888888888899999999999999999999999999999999999999999999999999998


Q ss_pred             HHHhhhhhhh-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023889          226 HVYLHYDQVV-E-MHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLA  272 (275)
Q Consensus       226 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~  272 (275)
                      ....+.++.. + .++.......+++.++++||++||++|+|+++|.++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~~  205 (205)
T smart00724      157 TVTVHYAQAESGLFPPLLYLLFLLLLLCLQLLNIYWFFLILRMARKLLS  205 (205)
T ss_pred             HHHhhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8766654322 1 345556677788899999999999999999999763

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.

>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices

Probab=100.00  E-value=3.2e-34  Score=243.68  Aligned_cols=193  Identities=33%  Similarity=0.593  Sum_probs=159.6

Q ss_pred             hhehhhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHhcccCCC-hhHHHH
Q 023889           72 EWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGG-MEYVVH  150 (275)
Q Consensus        72 ~w~~r~vS~vHa~v~~~~~~~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~is~GYFl~Dl~~~~~~~~~~~~-~~~l~H  150 (275)
                      ||++|++|++|+++++.+|++++..++.+.+++++++. .++++..+...++++|||++|+.++..+.+..+| .++++|
T Consensus         1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~H   79 (198)
T PF03798_consen    1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDWPDDPW-YYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLH   79 (198)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhcccCcc-CCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence            79999999999999999999999876422222233333 4456677789999999999999999986555444 899999


Q ss_pred             HHHHHHHHHHHHhcCcchhhHHHHHHHhccchhhhHHHHHHHh-CC-CCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 023889          151 HSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTA-GM-KRSTTYLVNGVIIFFAWLIARILLFVYMFYHVY  228 (275)
Q Consensus       151 H~v~l~~~~~~~~~~~~~~~~~~~Ll~ElStpFLn~Rw~l~~~-g~-~~s~~~~~n~~~~~~~Ff~~Ri~~~~~~~~~~~  228 (275)
                      |++++.++..++..+.+++++..++++|+||||+|+||++++. |. ++++.+..|++++.++|+++|++.+|+..++.+
T Consensus        80 H~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~~~~~~  159 (198)
T PF03798_consen   80 HVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIVLFPYLIYWVY  159 (198)
T ss_pred             HHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888889999999999999999999999999999 77 688999999999999999999999999887776


Q ss_pred             hhhhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023889          229 LHYDQV--VEMHAIGYLLVFVVPFVLAIMNVMWFGKILK  265 (275)
Q Consensus       229 ~~~~~~--~~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k  265 (275)
                      .+..+.  .+.++.......++..++++||++||+||+|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r  198 (198)
T PF03798_consen  160 WDVWPLPLWKVPWPVPWIFLVLLLVLFVLNIYWFYLILR  198 (198)
T ss_pred             HHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            654321  1222445566777888899999999999986

Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane

>KOG4474 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=3.1e-27  Score=203.99  Aligned_cols=196  Identities=22%  Similarity=0.274  Sum_probs=163.8

Q ss_pred             CCCcchhhhhehhhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 023889           64 GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLG  143 (275)
Q Consensus        64 ~l~~~~r~~w~~r~vS~vHa~v~~~~~~~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~is~GYFl~Dl~~~~~~~~~~~  143 (275)
                      .+++.+|.+|.|+.||++||++++.++.+++..+   + +...||++ ..+..+..+.++|+|||+||+++|..+.....
T Consensus        37 ~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~---~-~~~~~~~~-~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~  111 (253)
T KOG4474|consen   37 WFSVYQKKRFSNLTVSLLHSTISGLWALLSLLYD---P-EMVDDPIT-YHSLSAYQLLLFSAGYFIYDLVDMLMNEQSEL  111 (253)
T ss_pred             eeccccchhhhhhHHHHHHHHHHHHHHHHHHHhC---c-ccccCHHH-HHhhhhHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence            4677779999999999999999999999998854   2 33456663 36788899999999999999999997544445


Q ss_pred             ChhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHhccchhhhHHHHHHHhCCCCC-hhHHHHHHHHHHHHHHHHHhHHHH
Q 023889          144 GMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRS-TTYLVNGVIIFFAWLIARILLFVY  222 (275)
Q Consensus       144 ~~~~l~HH~v~l~~~~~~~~~~~~~~~~~~~Ll~ElStpFLn~Rw~l~~~g~~~s-~~~~~n~~~~~~~Ff~~Ri~~~~~  222 (275)
                      .+|+++||++++.++..+++++.+..++.+.+++|+||||||+|.+++.+|.+++ +.++++..++..+||.+|.+...|
T Consensus       112 s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~~~~~  191 (253)
T KOG4474|consen  112 SWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLIPQIY  191 (253)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhcccee
Confidence            6899999999999999999999888899999999999999999999999998654 469999999999999999998877


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023889          223 MFYHVYLHYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGL  267 (275)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~  267 (275)
                      ..++...+.+   ..+.....+..++...+.++|.+-+++++++.
T Consensus       192 l~~~~i~~~~---~~~~~~~~~~~gg~~~l~~~n~~l~~rll~sd  233 (253)
T KOG4474|consen  192 LTYFLIANAP---FLHWYLKLFALGGLLCLAVINTVLTLRLLASD  233 (253)
T ss_pred             EEEEEeeeCC---CcceehhHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence            7665554432   22223334567788899999999999999876

>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=2.7e-11  Score=109.10  Aligned_cols=212  Identities=13%  Similarity=0.171  Sum_probs=146.6

Q ss_pred             hccCCCCcchhhhhehhhhHHHHHHHHHHHHHHHHHhcCCCCCc---CCCCCccccCChhhHHHHHHHHHHHHHHHHHHH
Q 023889           60 KAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQ---QHTGPITFRSSWLSNFGLGVSVGYFLADLGMIF  136 (275)
Q Consensus        60 k~y~~l~~~~r~~w~~r~vS~vHa~v~~~~~~~~l~~~~~~~~~---~~~d~i~~~~s~~~~~~~~is~GYFl~Dl~~~~  136 (275)
                      ..++.-+++.+.+..+..=..+-=.++.+.|+|++..++-|.|.   +.+-|. ....+..+....+-+||-..-+....
T Consensus        76 ~~~~~~~~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP~-~~~~~~~k~~Y~~e~gfY~~~l~al~  154 (318)
T KOG1607|consen   76 LRLNVTADRRKKKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYPD-QTLPPSFKAYYLLEAGFYIQLLFALF  154 (318)
T ss_pred             HhcCCcCchhhhhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCCC-CCCCHHHHHHHHHhhHHHHHHHHHHH
Confidence            34555555555777777777777777888888887753222221   111111 22345556667788899888888877


Q ss_pred             HhcccCCChhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHhccchhhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHH
Q 023889          137 WLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIAR  216 (275)
Q Consensus       137 ~~~~~~~~~~~l~HH~v~l~~~~~~~~~~~~~~~~~~~Ll~ElStpFLn~Rw~l~~~g~~~s~~~~~n~~~~~~~Ff~~R  216 (275)
                      .......-++|++||+++++....+...+..........+++.|.++|.+.++++..+.+  ........+|+..|+..|
T Consensus       155 ~d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R~G~lil~lhD~SD~~Le~~K~~nY~~~~--~~~~~~F~~F~~~wi~~R  232 (318)
T KOG1607|consen  155 LDEKRKDFWEMVVHHVVTLILISLSYVFNFTRVGTLILALHDASDVFLELGKMLNYLQFE--AIADFVFVLFAFSWIYTR  232 (318)
T ss_pred             hhccccHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeeeecchHHHHHHHHHHchhhHH--HHHHHHHHHHHHHHHHHH
Confidence            544444447899999999888777766566556666778999999999999988877655  556677788999999999


Q ss_pred             HhHHHHHHHHH-Hh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023889          217 ILLFVYMFYHV-YL-HYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKR  274 (275)
Q Consensus       217 i~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~~~  274 (275)
                      +...|....+. .. +......-++..+.+......++++||++|++.|+|.+.|.++++
T Consensus       233 L~~~p~wil~st~~~~~~~~~~~~~~~~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~~~g  292 (318)
T KOG1607|consen  233 LIYYPFWILRSTSREDFSLRQYQPKPSYYFFNCLLLALQLLHIYWFYLILRMAYRVIKRG  292 (318)
T ss_pred             HHHHHHHHHHHhHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88777554322 21 111111012344566778888999999999999999999999844

>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]

Probab=99.28  E-value=4.4e-11  Score=106.50  Aligned_cols=220  Identities=14%  Similarity=0.160  Sum_probs=144.6

Q ss_pred             HHHHhHhhhhhccCCCCcchhhhhehhhhHHHHHHHHHHHHHHHHHhcCCCC---CcCCCC-CccccCChhhHHHHHHHH
Q 023889           50 LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFS---DQQHTG-PITFRSSWLSNFGLGVSV  125 (275)
Q Consensus        50 ls~~ls~~~~k~y~~l~~~~r~~w~~r~vS~vHa~v~~~~~~~~l~~~~~~~---~~~~~d-~i~~~~s~~~~~~~~is~  125 (275)
                      +...+.+++....+--++++..+++...-+.+--.+.++.|+|++..++.+.   ++..+| |. +..++.-+....+-.
T Consensus       134 ~md~virpf~l~~~v~s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~-~~~p~lfk~fYliqa  212 (395)
T COG5058         134 LMDVVIRPFGLELNVRSEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPV-FYNPFLFKAFYLIQA  212 (395)
T ss_pred             HHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCcc-ccCcHHHHHHHHHHH
Confidence            4444555554334334566668999999999999999999999887665542   111122 33 445666677777888


Q ss_pred             HHHHHHHHHHH--HhcccCCChhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHhccchhhhHHHHHHHhCCCCChhHHH
Q 023889          126 GYFLADLGMIF--WLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLV  203 (275)
Q Consensus       126 GYFl~Dl~~~~--~~~~~~~~~~~l~HH~v~l~~~~~~~~~~~~~~~~~~~Ll~ElStpFLn~Rw~l~~~g~~~s~~~~~  203 (275)
                      ||-+....+.+  ...|...-++++.||+++++.+..+....+..........+++|+|||.+.+.++..|-   .+...
T Consensus       213 afw~qQa~ilvLqlEkprkD~~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~---~l~~~  289 (395)
T COG5058         213 AFWAQQACILVLQLEKPRKDFKELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNS---VLATF  289 (395)
T ss_pred             HHHHHHHhhheeeecchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHHHHHHHhhc---hhHHH
Confidence            88888844443  34555555899999999988766555333333334455689999999999999888764   55556


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhhh---hh------hhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023889          204 NGVIIFFAWLIARILLFVYMFYHVYLHYD---QV------VEMHA-IGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAK  273 (275)
Q Consensus       204 n~~~~~~~Ff~~Ri~~~~~~~~~~~~~~~---~~------~~~~~-~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~~  273 (275)
                      ....|+..|+..|-....-..+..+....   ..      .+..- ....+...+...++.+|++|+..|+|.++|.+..
T Consensus       290 iF~iFv~~wIysRHyln~kIlw~vlt~~r~~g~~~L~va~~qykcwisl~i~~iLl~aLQlvniyWl~lIvRvayRv~~~  369 (395)
T COG5058         290 IFGIFVFIWIYSRHYLNLKILWSVLTAFRTIGNFVLDVATQQYKCWISLPIVFILLQALQLVNIYWLFLIVRVAYRVIWE  369 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhcCceeeEeechhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            66778899999994443222222222211   10      11111 1223445566789999999999999999998864

>PF14018 DUF4234: Domain of unknown function (DUF4234)

Probab=82.91  E-value=14  Score=26.06  Aligned_cols=54  Identities=13%  Similarity=0.265  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHhhhhhhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023889          219 LFVYMFYHVYLHYDQVVEM------HAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLA  272 (275)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~  272 (275)
                      .|.|..++++...++..+.      ++......+...+...+.+++|++|+-+.+-+.++
T Consensus        14 ~GIY~l~W~y~~~~~~~~~~~~~~~~~~~~~~lll~ilt~gi~~i~w~~k~~~~i~~~~~   73 (75)
T PF14018_consen   14 CGIYGLYWLYKIWKELNQLTGRIISPRSMTLWLLLSILTCGIYSIYWAYKLGNRINEEAR   73 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666676665443211      11222333344556789999999999998877664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00