Query 023894
Match_columns 275
No_of_seqs 273 out of 1484
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:25:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02237 glyceraldehyde-3-phos 100.0 2.5E-72 5.5E-77 545.5 22.6 255 3-267 1-255 (442)
2 PLN03096 glyceraldehyde-3-phos 100.0 1.5E-62 3.2E-67 473.1 21.3 227 34-267 12-238 (395)
3 PTZ00434 cytosolic glyceraldeh 100.0 1.7E-61 3.7E-66 460.4 18.1 182 84-267 1-194 (361)
4 PRK08289 glyceraldehyde-3-phos 100.0 3.5E-60 7.7E-65 462.7 19.9 210 49-267 96-315 (477)
5 PRK07403 glyceraldehyde-3-phos 100.0 2.6E-58 5.6E-63 436.5 18.4 180 86-267 1-180 (337)
6 PTZ00023 glyceraldehyde-3-phos 100.0 7.1E-58 1.5E-62 433.5 18.5 177 85-267 1-178 (337)
7 PRK15425 gapA glyceraldehyde-3 100.0 1.1E-57 2.4E-62 431.4 18.6 176 86-268 2-177 (331)
8 COG0057 GapA Glyceraldehyde-3- 100.0 2.5E-57 5.4E-62 426.7 18.3 177 86-267 1-178 (335)
9 PRK07729 glyceraldehyde-3-phos 100.0 9.3E-57 2E-61 426.6 18.9 178 85-267 1-178 (343)
10 PTZ00353 glycosomal glyceralde 100.0 1.1E-56 2.3E-61 426.0 18.8 176 85-267 1-179 (342)
11 TIGR01534 GAPDH-I glyceraldehy 100.0 2.7E-56 5.8E-61 421.4 18.3 176 88-267 1-178 (327)
12 PLN02272 glyceraldehyde-3-phos 100.0 3.8E-55 8.3E-60 424.2 22.9 175 87-267 86-261 (421)
13 PRK13535 erythrose 4-phosphate 100.0 1.4E-54 3.1E-59 410.9 19.0 177 87-267 2-180 (336)
14 PRK08955 glyceraldehyde-3-phos 100.0 9.7E-54 2.1E-58 405.0 19.0 176 86-267 2-178 (334)
15 PLN02358 glyceraldehyde-3-phos 100.0 1.1E-53 2.5E-58 405.1 19.0 177 85-267 4-182 (338)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 9.7E-52 2.1E-56 390.0 19.2 176 88-267 1-178 (325)
17 PF00044 Gp_dh_N: Glyceraldehy 100.0 8.5E-51 1.8E-55 347.0 11.5 150 87-241 1-151 (151)
18 smart00846 Gp_dh_N Glyceraldeh 100.0 7E-46 1.5E-50 315.4 16.1 149 87-241 1-149 (149)
19 KOG0657 Glyceraldehyde 3-phosp 100.0 1.3E-41 2.8E-46 312.6 5.5 161 97-268 1-162 (285)
20 TIGR01546 GAPDH-II_archae glyc 100.0 8.5E-36 1.8E-40 282.6 14.6 161 89-268 1-164 (333)
21 PRK04207 glyceraldehyde-3-phos 100.0 2.8E-30 6.1E-35 244.8 14.4 161 86-267 1-166 (341)
22 PRK06901 aspartate-semialdehyd 99.9 1.2E-23 2.6E-28 198.8 12.3 149 86-267 3-156 (322)
23 PRK14874 aspartate-semialdehyd 99.9 1.3E-21 2.9E-26 184.7 12.5 149 87-267 2-155 (334)
24 TIGR01745 asd_gamma aspartate- 99.8 9.8E-21 2.1E-25 181.9 10.9 151 87-267 1-160 (366)
25 COG0136 Asd Aspartate-semialde 99.8 1.5E-20 3.2E-25 178.5 11.6 151 87-267 2-159 (334)
26 TIGR01296 asd_B aspartate-semi 99.8 1.8E-20 4E-25 177.8 12.2 148 88-267 1-153 (339)
27 PRK08040 putative semialdehyde 99.7 2E-17 4.2E-22 157.6 15.1 150 85-266 3-157 (336)
28 PRK06728 aspartate-semialdehyd 99.7 2.1E-17 4.6E-22 158.0 14.0 151 85-267 4-158 (347)
29 PRK06598 aspartate-semialdehyd 99.7 1.5E-17 3.2E-22 160.2 11.2 152 87-267 2-161 (369)
30 PLN02383 aspartate semialdehyd 99.7 3.9E-16 8.5E-21 148.8 12.6 151 84-266 5-164 (344)
31 PRK05671 aspartate-semialdehyd 99.7 5.6E-16 1.2E-20 147.5 13.1 149 86-267 4-157 (336)
32 PRK08664 aspartate-semialdehyd 99.6 8.4E-15 1.8E-19 139.2 11.4 162 84-267 1-175 (349)
33 TIGR00978 asd_EA aspartate-sem 99.6 1.1E-14 2.3E-19 138.1 10.8 160 87-267 1-172 (341)
34 PRK00436 argC N-acetyl-gamma-g 99.4 1.2E-12 2.5E-17 124.5 11.4 152 85-266 1-177 (343)
35 TIGR01850 argC N-acetyl-gamma- 99.4 2.4E-12 5.1E-17 122.7 10.1 152 87-266 1-177 (346)
36 PRK08300 acetaldehyde dehydrog 99.3 3.2E-12 7E-17 120.6 9.3 150 85-264 3-154 (302)
37 PRK11863 N-acetyl-gamma-glutam 99.3 7.7E-12 1.7E-16 118.5 10.4 132 85-262 1-137 (313)
38 PLN02968 Probable N-acetyl-gam 99.3 1.5E-11 3.2E-16 119.1 10.9 153 85-266 37-212 (381)
39 KOG4777 Aspartate-semialdehyde 99.1 4.6E-11 9.9E-16 111.1 5.1 159 87-266 4-178 (361)
40 TIGR01851 argC_other N-acetyl- 99.1 6.1E-10 1.3E-14 105.6 9.8 130 87-262 2-136 (310)
41 TIGR03215 ac_ald_DH_ac acetald 99.0 2.1E-09 4.5E-14 100.8 10.0 151 87-269 2-153 (285)
42 PF01118 Semialdhyde_dh: Semia 98.8 6.4E-09 1.4E-13 84.5 4.3 113 88-228 1-119 (121)
43 smart00859 Semialdhyde_dh Semi 97.9 2.1E-05 4.5E-10 63.5 6.2 113 88-227 1-120 (122)
44 COG0002 ArgC Acetylglutamate s 97.8 6.7E-05 1.4E-09 72.5 8.0 143 85-256 1-167 (349)
45 PRK13301 putative L-aspartate 97.7 9.3E-05 2E-09 69.3 6.5 92 85-207 1-93 (267)
46 PRK13303 L-aspartate dehydroge 97.5 0.0002 4.3E-09 66.1 6.6 91 87-209 2-93 (265)
47 TIGR01921 DAP-DH diaminopimela 97.5 0.00038 8.3E-09 66.8 8.0 91 85-209 2-92 (324)
48 TIGR00036 dapB dihydrodipicoli 97.4 0.00035 7.5E-09 64.6 6.2 95 87-206 2-97 (266)
49 PRK06270 homoserine dehydrogen 97.4 0.0006 1.3E-08 65.1 7.9 37 85-121 1-44 (341)
50 COG1712 Predicted dinucleotide 97.1 0.0016 3.5E-08 60.2 6.8 92 87-208 1-92 (255)
51 PRK13304 L-aspartate dehydroge 97.0 0.0024 5.2E-08 58.9 7.5 92 87-209 2-93 (265)
52 COG0460 ThrA Homoserine dehydr 97.0 0.0015 3.1E-08 63.1 6.2 37 85-121 2-45 (333)
53 PRK06813 homoserine dehydrogen 97.0 0.0013 2.7E-08 63.6 5.7 36 86-121 2-44 (346)
54 PRK06392 homoserine dehydrogen 97.0 0.0023 5E-08 61.3 7.3 35 87-121 1-40 (326)
55 PRK08374 homoserine dehydrogen 96.9 0.0015 3.3E-08 62.5 5.5 108 85-208 1-121 (336)
56 PRK13302 putative L-aspartate 96.9 0.0034 7.5E-08 58.2 7.7 93 84-206 4-96 (271)
57 PRK06349 homoserine dehydrogen 96.8 0.0021 4.6E-08 63.2 6.2 94 85-208 2-103 (426)
58 PRK00048 dihydrodipicolinate r 96.8 0.0026 5.7E-08 58.4 6.2 34 86-121 1-35 (257)
59 COG4569 MhpF Acetaldehyde dehy 96.3 0.015 3.3E-07 53.6 7.7 137 85-256 3-145 (310)
60 PRK11579 putative oxidoreducta 96.3 0.018 4E-07 54.3 8.3 92 86-209 4-96 (346)
61 PF01408 GFO_IDH_MocA: Oxidore 96.3 0.012 2.5E-07 46.5 5.9 95 87-210 1-95 (120)
62 PF03447 NAD_binding_3: Homose 96.2 0.0016 3.4E-08 52.2 0.5 87 93-208 1-89 (117)
63 PF01113 DapB_N: Dihydrodipico 96.0 0.011 2.3E-07 48.5 4.6 33 87-121 1-34 (124)
64 COG2344 AT-rich DNA-binding pr 95.9 0.015 3.2E-07 52.6 5.6 98 85-210 83-180 (211)
65 cd01076 NAD_bind_1_Glu_DH NAD( 95.9 0.1 2.3E-06 47.4 10.9 34 85-121 30-63 (227)
66 COG0289 DapB Dihydrodipicolina 95.6 0.061 1.3E-06 50.6 8.4 96 86-206 2-98 (266)
67 cd05211 NAD_bind_Glu_Leu_Phe_V 95.3 0.21 4.5E-06 45.2 10.6 34 85-121 22-55 (217)
68 PLN02700 homoserine dehydrogen 95.2 0.043 9.4E-07 53.8 6.4 38 84-121 1-44 (377)
69 cd05313 NAD_bind_2_Glu_DH NAD( 94.6 0.37 8E-06 45.0 10.4 48 85-135 37-93 (254)
70 PF02826 2-Hacid_dh_C: D-isome 94.5 0.057 1.2E-06 46.6 4.6 33 86-121 36-68 (178)
71 PRK09414 glutamate dehydrogena 94.5 0.13 2.9E-06 51.5 7.8 102 85-206 231-341 (445)
72 PRK05447 1-deoxy-D-xylulose 5- 94.5 0.14 3.1E-06 50.4 7.8 111 87-206 2-120 (385)
73 PRK09466 metL bifunctional asp 94.3 0.035 7.6E-07 59.2 3.4 37 85-121 457-500 (810)
74 PLN02477 glutamate dehydrogena 94.3 0.44 9.5E-06 47.3 10.8 34 85-121 205-238 (410)
75 PRK10206 putative oxidoreducta 94.2 0.096 2.1E-06 49.9 5.9 95 86-209 1-96 (344)
76 TIGR03736 PRTRC_ThiF PRTRC sys 94.1 0.15 3.2E-06 47.3 6.6 108 85-197 10-127 (244)
77 COG0673 MviM Predicted dehydro 94.0 0.19 4.1E-06 46.4 7.3 97 85-209 2-99 (342)
78 COG4091 Predicted homoserine d 93.9 0.11 2.5E-06 51.1 5.7 92 85-187 16-112 (438)
79 PRK09436 thrA bifunctional asp 93.7 0.056 1.2E-06 57.7 3.6 37 85-121 464-506 (819)
80 PRK05472 redox-sensing transcr 93.7 0.086 1.9E-06 46.9 4.2 96 86-209 84-179 (213)
81 COG0569 TrkA K+ transport syst 93.2 0.21 4.5E-06 45.2 5.9 98 87-210 1-102 (225)
82 PF03807 F420_oxidored: NADP o 92.7 0.23 4.9E-06 37.8 4.6 43 88-131 1-43 (96)
83 PRK08410 2-hydroxyacid dehydro 92.6 0.16 3.4E-06 48.1 4.5 33 85-120 144-176 (311)
84 PLN02775 Probable dihydrodipic 92.6 0.42 9E-06 45.5 7.2 34 85-121 10-44 (286)
85 PLN02696 1-deoxy-D-xylulose-5- 92.6 0.94 2E-05 45.7 10.0 110 86-206 57-178 (454)
86 PRK14030 glutamate dehydrogena 92.4 1.2 2.6E-05 44.9 10.5 125 56-206 207-341 (445)
87 CHL00194 ycf39 Ycf39; Provisio 92.4 0.29 6.3E-06 45.3 5.9 30 87-119 1-31 (317)
88 PRK06487 glycerate dehydrogena 92.1 0.2 4.3E-06 47.6 4.5 33 86-121 148-180 (317)
89 PF05368 NmrA: NmrA-like famil 91.8 0.2 4.3E-06 43.9 3.9 96 89-209 1-103 (233)
90 PTZ00079 NADP-specific glutama 91.7 0.93 2E-05 45.7 8.8 125 55-206 215-350 (454)
91 PRK06932 glycerate dehydrogena 91.5 0.25 5.4E-06 46.9 4.4 32 86-120 147-178 (314)
92 COG0111 SerA Phosphoglycerate 91.0 0.3 6.6E-06 46.8 4.5 112 86-210 142-261 (324)
93 PF13460 NAD_binding_10: NADH( 90.8 0.17 3.8E-06 42.3 2.4 30 89-121 1-31 (183)
94 PRK08229 2-dehydropantoate 2-r 90.8 1.2 2.6E-05 41.6 8.2 32 85-119 1-32 (341)
95 PLN02928 oxidoreductase family 90.7 0.34 7.3E-06 46.7 4.5 33 86-121 159-191 (347)
96 PLN03209 translocon at the inn 90.7 2 4.4E-05 44.5 10.4 31 85-118 79-110 (576)
97 PRK07574 formate dehydrogenase 90.5 0.36 7.8E-06 47.4 4.5 33 86-121 192-224 (385)
98 PRK06436 glycerate dehydrogena 90.3 0.39 8.5E-06 45.5 4.6 33 86-121 122-154 (303)
99 COG2910 Putative NADH-flavin r 90.2 1.2 2.6E-05 40.6 7.2 30 87-119 1-31 (211)
100 PRK15409 bifunctional glyoxyla 90.2 0.39 8.4E-06 45.9 4.4 32 85-119 144-176 (323)
101 PRK13243 glyoxylate reductase; 90.2 0.4 8.7E-06 45.8 4.5 33 85-120 149-181 (333)
102 PRK11790 D-3-phosphoglycerate 90.2 0.4 8.7E-06 47.2 4.6 31 86-119 151-181 (409)
103 KOG1502 Flavonol reductase/cin 89.9 1.3 2.8E-05 43.0 7.7 81 85-186 5-88 (327)
104 PF03446 NAD_binding_2: NAD bi 89.5 0.58 1.3E-05 39.7 4.6 31 86-119 1-31 (163)
105 COG1052 LdhA Lactate dehydroge 89.5 0.59 1.3E-05 44.9 5.1 33 85-120 145-177 (324)
106 TIGR03649 ergot_EASG ergot alk 89.5 1.2 2.7E-05 40.0 7.0 28 88-118 1-29 (285)
107 PF03435 Saccharop_dh: Sacchar 89.2 0.48 1E-05 45.3 4.2 95 89-207 1-96 (386)
108 PRK05476 S-adenosyl-L-homocyst 89.1 1.1 2.3E-05 44.9 6.7 30 87-119 213-242 (425)
109 PRK15469 ghrA bifunctional gly 89.1 0.56 1.2E-05 44.6 4.6 32 86-120 136-167 (312)
110 PTZ00117 malate dehydrogenase; 88.8 2.6 5.7E-05 40.0 8.9 25 85-109 4-28 (319)
111 PLN02306 hydroxypyruvate reduc 88.5 0.61 1.3E-05 45.8 4.5 31 86-119 165-196 (386)
112 PRK15438 erythronate-4-phospha 88.3 0.67 1.4E-05 45.5 4.6 56 56-119 91-146 (378)
113 PLN00016 RNA-binding protein; 88.2 1.6 3.4E-05 41.6 7.0 33 85-120 51-88 (378)
114 TIGR02130 dapB_plant dihydrodi 88.2 0.99 2.1E-05 42.7 5.5 29 87-118 1-30 (275)
115 PRK12480 D-lactate dehydrogena 88.1 0.71 1.5E-05 44.2 4.6 31 86-119 146-176 (330)
116 PLN03139 formate dehydrogenase 88.1 0.62 1.3E-05 45.8 4.3 32 85-119 198-229 (386)
117 cd08230 glucose_DH Glucose deh 88.0 5.5 0.00012 37.2 10.5 141 87-255 174-315 (355)
118 COG0771 MurD UDP-N-acetylmuram 87.6 3.1 6.8E-05 41.9 9.0 87 86-202 7-95 (448)
119 PRK11880 pyrroline-5-carboxyla 87.6 0.86 1.9E-05 41.2 4.6 24 85-108 1-24 (267)
120 cd01075 NAD_bind_Leu_Phe_Val_D 87.5 1 2.3E-05 39.9 5.0 31 87-121 29-59 (200)
121 PF10727 Rossmann-like: Rossma 87.5 0.51 1.1E-05 39.5 2.8 34 85-121 9-42 (127)
122 PF02629 CoA_binding: CoA bind 87.4 0.65 1.4E-05 36.2 3.3 93 86-209 3-95 (96)
123 PLN02256 arogenate dehydrogena 86.9 1.4 2.9E-05 41.8 5.7 34 85-121 35-68 (304)
124 PLN02819 lysine-ketoglutarate 86.3 1.9 4.1E-05 47.7 7.1 95 86-202 569-674 (1042)
125 TIGR01202 bchC 2-desacetyl-2-h 86.3 3.5 7.6E-05 38.0 8.0 72 175-255 199-271 (308)
126 PTZ00082 L-lactate dehydrogena 86.3 1.4 3.1E-05 41.9 5.5 22 87-108 7-28 (321)
127 PRK07634 pyrroline-5-carboxyla 86.3 1.3 2.9E-05 39.2 5.1 36 86-121 4-40 (245)
128 cd00755 YgdL_like Family of ac 86.0 0.86 1.9E-05 41.7 3.7 104 87-194 12-120 (231)
129 PF13380 CoA_binding_2: CoA bi 85.9 2.5 5.5E-05 34.3 6.1 82 88-208 2-87 (116)
130 cd00401 AdoHcyase S-adenosyl-L 85.5 2.6 5.6E-05 42.0 7.0 29 87-118 203-231 (413)
131 TIGR01327 PGDH D-3-phosphoglyc 85.1 1.2 2.6E-05 45.3 4.6 32 86-120 138-169 (525)
132 PRK00257 erythronate-4-phospha 85.1 1.3 2.7E-05 43.6 4.6 31 86-119 116-146 (381)
133 cd01483 E1_enzyme_family Super 85.0 0.94 2E-05 37.3 3.2 105 88-196 1-109 (143)
134 PRK07819 3-hydroxybutyryl-CoA 84.9 4.2 9.2E-05 37.9 7.9 158 87-264 6-185 (286)
135 PF00056 Ldh_1_N: lactate/mala 84.7 3.7 8.1E-05 34.4 6.7 81 87-189 1-82 (141)
136 PLN02214 cinnamoyl-CoA reducta 84.7 5.9 0.00013 37.2 8.8 30 86-118 10-40 (342)
137 PRK13581 D-3-phosphoglycerate 84.6 1.3 2.7E-05 45.1 4.5 32 86-120 140-171 (526)
138 PRK14031 glutamate dehydrogena 84.5 3.9 8.5E-05 41.2 7.8 126 55-207 206-341 (444)
139 PRK11559 garR tartronate semia 84.3 1.5 3.2E-05 40.4 4.5 31 86-119 2-32 (296)
140 PRK08605 D-lactate dehydrogena 84.2 1.4 3.1E-05 42.0 4.5 32 86-119 146-177 (332)
141 PRK06223 malate dehydrogenase; 83.8 5.9 0.00013 36.8 8.3 30 87-118 3-32 (307)
142 PRK13403 ketol-acid reductoiso 83.5 1.5 3.4E-05 42.6 4.4 32 87-121 17-48 (335)
143 PF02254 TrkA_N: TrkA-N domain 83.1 2.4 5.1E-05 33.1 4.6 30 89-121 1-30 (116)
144 PRK06249 2-dehydropantoate 2-r 82.9 8.2 0.00018 36.0 8.9 24 85-108 4-27 (313)
145 PRK01438 murD UDP-N-acetylmura 82.8 8.9 0.00019 37.8 9.5 87 87-201 17-103 (480)
146 PRK07417 arogenate dehydrogena 82.8 1.7 3.6E-05 40.0 4.2 30 87-119 1-30 (279)
147 PRK06522 2-dehydropantoate 2-r 82.3 7.8 0.00017 35.2 8.4 30 87-119 1-30 (304)
148 PLN02712 arogenate dehydrogena 82.0 2 4.3E-05 45.1 4.8 34 85-121 51-84 (667)
149 COG1063 Tdh Threonine dehydrog 81.8 2.4 5.2E-05 40.5 5.0 99 88-210 171-272 (350)
150 PLN02712 arogenate dehydrogena 81.4 2 4.3E-05 45.1 4.6 34 85-121 368-401 (667)
151 PRK14619 NAD(P)H-dependent gly 80.0 2.8 6.1E-05 39.1 4.7 32 85-119 3-34 (308)
152 TIGR02853 spore_dpaA dipicolin 79.9 2.6 5.6E-05 39.6 4.4 32 87-121 152-183 (287)
153 COG3804 Uncharacterized conser 79.3 2.8 6E-05 40.5 4.4 35 85-121 1-35 (350)
154 PRK08507 prephenate dehydrogen 79.3 3.2 6.8E-05 38.0 4.7 32 87-119 1-32 (275)
155 COG0039 Mdh Malate/lactate deh 79.1 4.6 9.9E-05 39.0 5.9 33 87-119 1-34 (313)
156 TIGR01019 sucCoAalpha succinyl 79.1 6 0.00013 37.5 6.6 86 87-206 7-93 (286)
157 COG0287 TyrA Prephenate dehydr 79.0 3 6.5E-05 39.3 4.6 25 85-109 2-26 (279)
158 PLN02602 lactate dehydrogenase 78.8 3.9 8.4E-05 39.7 5.4 23 87-109 38-60 (350)
159 cd05293 LDH_1 A subgroup of L- 78.7 1.3 2.8E-05 42.2 2.0 23 87-109 4-26 (312)
160 PRK06476 pyrroline-5-carboxyla 78.6 3.3 7.2E-05 37.5 4.6 22 87-108 1-22 (258)
161 TIGR01087 murD UDP-N-acetylmur 78.6 9.7 0.00021 36.9 8.1 85 88-202 1-88 (433)
162 KOG0069 Glyoxylate/hydroxypyru 78.3 1.9 4E-05 42.0 3.0 23 85-107 161-183 (336)
163 PLN02688 pyrroline-5-carboxyla 78.2 4.1 8.9E-05 36.7 5.1 35 87-121 1-36 (266)
164 PRK09599 6-phosphogluconate de 77.9 3.2 7E-05 38.6 4.4 31 87-120 1-31 (301)
165 PLN02494 adenosylhomocysteinas 77.7 5.5 0.00012 40.6 6.2 30 87-119 255-284 (477)
166 PTZ00075 Adenosylhomocysteinas 77.5 3.3 7.1E-05 42.1 4.6 31 86-119 254-284 (476)
167 TIGR03366 HpnZ_proposed putati 77.4 15 0.00032 33.3 8.4 137 87-255 122-260 (280)
168 cd05291 HicDH_like L-2-hydroxy 77.1 4.6 9.9E-05 37.8 5.2 31 88-119 2-32 (306)
169 TIGR02717 AcCoA-syn-alpha acet 76.9 11 0.00024 37.5 8.0 85 85-206 6-94 (447)
170 PRK00066 ldh L-lactate dehydro 76.5 5.3 0.00011 38.0 5.5 24 86-109 6-29 (315)
171 PRK09496 trkA potassium transp 76.2 3.8 8.3E-05 39.6 4.5 31 87-120 1-31 (453)
172 PRK12490 6-phosphogluconate de 75.7 4 8.7E-05 38.0 4.4 30 87-119 1-30 (299)
173 PRK03369 murD UDP-N-acetylmura 75.7 12 0.00026 37.4 8.0 83 87-202 13-96 (488)
174 cd01338 MDH_choloroplast_like 75.4 6.7 0.00015 37.5 5.9 24 86-109 2-26 (322)
175 COG1062 AdhC Zn-dependent alco 75.4 4.7 0.0001 39.7 4.9 100 87-209 187-287 (366)
176 PRK03562 glutathione-regulated 75.2 3.1 6.8E-05 43.1 3.9 30 87-119 401-430 (621)
177 TIGR00872 gnd_rel 6-phosphoglu 75.1 4.2 9.1E-05 37.9 4.4 30 87-119 1-30 (298)
178 PRK06718 precorrin-2 dehydroge 75.0 37 0.0008 30.2 10.1 31 87-120 11-41 (202)
179 PF03721 UDPG_MGDP_dh_N: UDP-g 74.8 4.5 9.7E-05 35.5 4.2 30 87-119 1-30 (185)
180 PF00208 ELFV_dehydrog: Glutam 74.5 4.5 9.7E-05 37.3 4.3 102 86-206 32-144 (244)
181 PRK09880 L-idonate 5-dehydroge 74.5 14 0.00031 34.3 7.7 90 87-202 171-261 (343)
182 TIGR01505 tartro_sem_red 2-hyd 74.4 3.9 8.5E-05 37.6 3.9 29 88-119 1-29 (291)
183 cd05294 LDH-like_MDH_nadp A la 74.2 8.1 0.00018 36.5 6.1 23 87-109 1-24 (309)
184 PRK08268 3-hydroxy-acyl-CoA de 73.2 3.7 8.1E-05 41.6 3.7 30 87-119 8-37 (507)
185 PF02670 DXP_reductoisom: 1-de 72.8 7.1 0.00015 33.0 4.8 42 89-131 1-43 (129)
186 PRK07502 cyclohexadienyl dehyd 72.7 5.5 0.00012 37.0 4.5 32 87-119 7-38 (307)
187 PRK07679 pyrroline-5-carboxyla 72.7 6.4 0.00014 36.1 4.9 33 87-119 4-37 (279)
188 PRK03659 glutathione-regulated 72.6 4.7 0.0001 41.6 4.4 31 86-119 400-430 (601)
189 PRK00421 murC UDP-N-acetylmura 72.2 16 0.00036 35.9 7.9 84 87-202 8-92 (461)
190 PLN02586 probable cinnamyl alc 72.1 17 0.00036 34.4 7.7 30 87-119 185-214 (360)
191 COG1748 LYS9 Saccharopine dehy 72.0 11 0.00023 37.5 6.5 93 87-202 2-94 (389)
192 COG0334 GdhA Glutamate dehydro 71.8 27 0.00059 35.0 9.3 34 85-121 206-239 (411)
193 KOG0068 D-3-phosphoglycerate d 71.8 2.7 5.9E-05 41.4 2.3 22 87-108 147-168 (406)
194 PLN00106 malate dehydrogenase 71.6 7.2 0.00016 37.5 5.1 23 87-109 19-42 (323)
195 PRK12921 2-dehydropantoate 2-r 71.4 24 0.00052 32.2 8.3 22 87-108 1-22 (305)
196 cd00757 ThiF_MoeB_HesA_family 71.4 2 4.2E-05 38.6 1.1 23 87-109 22-44 (228)
197 PRK12491 pyrroline-5-carboxyla 71.1 7.2 0.00016 36.2 4.9 33 87-119 3-36 (272)
198 KOG2741 Dimeric dihydrodiol de 71.0 5.9 0.00013 38.8 4.4 42 85-127 5-46 (351)
199 PRK00141 murD UDP-N-acetylmura 70.9 26 0.00056 34.9 9.0 83 87-201 16-99 (473)
200 PRK04690 murD UDP-N-acetylmura 70.7 22 0.00048 35.4 8.5 84 87-202 9-95 (468)
201 PLN00141 Tic62-NAD(P)-related 70.7 9 0.0002 34.0 5.3 31 85-118 16-47 (251)
202 PRK10669 putative cation:proto 70.7 4.9 0.00011 40.7 4.0 32 86-120 417-448 (558)
203 cd05290 LDH_3 A subgroup of L- 70.7 7.5 0.00016 36.9 5.0 22 88-109 1-22 (307)
204 PRK15116 sulfur acceptor prote 70.2 3.9 8.5E-05 38.4 2.9 105 86-196 30-141 (268)
205 PRK02006 murD UDP-N-acetylmura 70.2 26 0.00056 34.9 8.9 31 87-121 8-38 (498)
206 TIGR00936 ahcY adenosylhomocys 70.1 6.4 0.00014 39.2 4.5 30 87-119 196-225 (406)
207 PRK05479 ketol-acid reductoiso 70.0 7.3 0.00016 37.7 4.8 31 87-120 18-48 (330)
208 PRK06928 pyrroline-5-carboxyla 70.0 7.6 0.00017 35.8 4.8 34 87-120 2-36 (277)
209 PRK14106 murD UDP-N-acetylmura 70.0 23 0.0005 34.4 8.3 88 87-201 6-93 (450)
210 PRK00094 gpsA NAD(P)H-dependen 69.8 7.3 0.00016 35.8 4.6 30 87-119 2-31 (325)
211 COG2085 Predicted dinucleotide 69.5 8.1 0.00017 35.4 4.7 31 86-119 1-31 (211)
212 PRK08644 thiamine biosynthesis 69.2 3.4 7.4E-05 37.0 2.2 24 86-109 28-51 (212)
213 PLN02662 cinnamyl-alcohol dehy 68.9 13 0.00029 33.7 6.0 29 87-118 5-34 (322)
214 COG1179 Dinucleotide-utilizing 68.7 5.2 0.00011 37.7 3.3 109 87-199 31-144 (263)
215 TIGR03026 NDP-sugDHase nucleot 68.7 6.6 0.00014 38.2 4.2 30 87-119 1-30 (411)
216 PRK08306 dipicolinate synthase 68.6 7.8 0.00017 36.5 4.6 32 86-120 152-183 (296)
217 PF02737 3HCDH_N: 3-hydroxyacy 68.6 8.8 0.00019 33.3 4.6 157 88-263 1-176 (180)
218 cd01486 Apg7 Apg7 is an E1-lik 68.2 3 6.5E-05 40.2 1.7 22 88-109 1-22 (307)
219 PRK15461 NADH-dependent gamma- 67.5 7.8 0.00017 36.1 4.3 31 87-120 2-32 (296)
220 PRK03803 murD UDP-N-acetylmura 67.3 31 0.00068 33.7 8.6 85 88-202 8-94 (448)
221 PRK15059 tartronate semialdehy 67.3 8 0.00017 36.1 4.4 30 87-119 1-30 (292)
222 PRK11064 wecC UDP-N-acetyl-D-m 66.9 8.4 0.00018 37.9 4.6 31 86-119 3-33 (415)
223 PRK12475 thiamine/molybdopteri 66.4 4.1 9E-05 39.2 2.3 24 86-109 24-47 (338)
224 PRK02472 murD UDP-N-acetylmura 66.3 30 0.00065 33.5 8.3 85 87-201 6-93 (447)
225 PRK11199 tyrA bifunctional cho 66.3 8.1 0.00018 37.5 4.3 31 86-119 98-129 (374)
226 cd08239 THR_DH_like L-threonin 66.0 14 0.00031 33.9 5.7 135 87-255 165-302 (339)
227 TIGR01915 npdG NADPH-dependent 65.9 10 0.00023 33.5 4.6 29 87-118 1-30 (219)
228 PRK05678 succinyl-CoA syntheta 65.7 20 0.00044 34.0 6.7 87 86-206 8-95 (291)
229 TIGR03201 dearomat_had 6-hydro 65.6 50 0.0011 30.8 9.3 137 87-255 168-312 (349)
230 KOG1203 Predicted dehydrogenas 65.3 17 0.00038 36.4 6.4 26 84-109 77-103 (411)
231 TIGR00465 ilvC ketol-acid redu 65.2 8.8 0.00019 36.6 4.2 32 87-121 4-35 (314)
232 PRK01710 murD UDP-N-acetylmura 65.0 19 0.00041 35.5 6.7 88 87-202 15-103 (458)
233 PRK07680 late competence prote 65.0 13 0.00028 33.9 5.2 22 87-108 1-22 (273)
234 PLN02427 UDP-apiose/xylose syn 64.8 12 0.00026 35.5 5.1 34 85-120 13-47 (386)
235 cd08281 liver_ADH_like1 Zinc-d 64.8 26 0.00056 33.1 7.3 96 87-208 193-291 (371)
236 cd08242 MDR_like Medium chain 64.3 48 0.0011 29.9 8.8 84 87-202 157-240 (319)
237 PLN02545 3-hydroxybutyryl-CoA 64.2 11 0.00024 34.8 4.6 30 87-119 5-34 (295)
238 PTZ00431 pyrroline carboxylate 64.0 7.6 0.00016 35.5 3.5 23 87-109 4-26 (260)
239 TIGR02354 thiF_fam2 thiamine b 63.9 3.6 7.8E-05 36.6 1.3 23 86-108 21-43 (200)
240 PRK09496 trkA potassium transp 63.8 11 0.00025 36.3 4.8 31 86-119 231-261 (453)
241 PRK05808 3-hydroxybutyryl-CoA 63.8 11 0.00024 34.5 4.5 30 87-119 4-33 (282)
242 COG0345 ProC Pyrroline-5-carbo 63.3 13 0.00029 34.9 5.0 42 87-130 2-44 (266)
243 KOG0455 Homoserine dehydrogena 63.3 8.1 0.00017 37.0 3.5 37 85-121 2-44 (364)
244 PRK06129 3-hydroxyacyl-CoA deh 61.7 12 0.00026 34.9 4.4 31 87-120 3-33 (308)
245 PRK04308 murD UDP-N-acetylmura 61.6 58 0.0013 31.8 9.3 86 87-201 6-92 (445)
246 cd01487 E1_ThiF_like E1_ThiF_l 61.5 6.7 0.00015 34.0 2.5 22 88-109 1-22 (174)
247 PRK14573 bifunctional D-alanyl 61.4 35 0.00076 36.4 8.3 83 88-202 6-89 (809)
248 PRK08818 prephenate dehydrogen 61.3 13 0.00028 36.6 4.6 23 86-108 4-27 (370)
249 PRK09260 3-hydroxybutyryl-CoA 61.1 13 0.00027 34.3 4.4 30 87-119 2-31 (288)
250 TIGR02355 moeB molybdopterin s 60.6 5.5 0.00012 36.4 1.9 111 87-202 25-141 (240)
251 PRK11154 fadJ multifunctional 60.6 69 0.0015 33.9 10.2 33 85-119 308-340 (708)
252 PRK03806 murD UDP-N-acetylmura 60.4 65 0.0014 31.3 9.4 86 87-207 7-94 (438)
253 PRK06545 prephenate dehydrogen 60.4 12 0.00027 35.8 4.3 28 88-116 2-29 (359)
254 PRK14618 NAD(P)H-dependent gly 60.2 15 0.00032 34.5 4.7 31 87-120 5-35 (328)
255 cd05191 NAD_bind_amino_acid_DH 60.1 15 0.00033 27.8 4.0 22 87-108 24-45 (86)
256 cd08298 CAD2 Cinnamyl alcohol 60.0 59 0.0013 29.5 8.5 128 87-255 169-296 (329)
257 PRK06035 3-hydroxyacyl-CoA deh 59.9 14 0.00031 34.0 4.5 30 87-119 4-33 (291)
258 PLN02986 cinnamyl-alcohol dehy 59.4 29 0.00063 31.8 6.4 32 87-121 6-39 (322)
259 PRK05690 molybdopterin biosynt 59.4 5.3 0.00011 36.5 1.6 24 86-109 32-55 (245)
260 PF01262 AlaDh_PNT_C: Alanine 59.1 18 0.00039 30.8 4.7 34 85-121 19-52 (168)
261 TIGR00243 Dxr 1-deoxy-D-xylulo 59.0 15 0.00033 36.5 4.7 44 87-131 2-46 (389)
262 PRK00258 aroE shikimate 5-dehy 59.0 40 0.00086 31.1 7.3 33 87-121 124-156 (278)
263 PRK05442 malate dehydrogenase; 58.9 18 0.00039 34.7 5.1 24 85-108 3-27 (326)
264 cd05213 NAD_bind_Glutamyl_tRNA 58.6 12 0.00025 35.4 3.7 32 86-119 178-209 (311)
265 PLN02178 cinnamyl-alcohol dehy 58.5 35 0.00077 32.6 7.1 30 87-119 180-209 (375)
266 PRK05865 hypothetical protein; 58.5 35 0.00076 37.2 7.7 30 87-119 1-31 (854)
267 KOG4354 N-acetyl-gamma-glutamy 58.3 31 0.00067 33.0 6.4 36 82-119 15-51 (340)
268 TIGR02356 adenyl_thiF thiazole 58.0 5.3 0.00011 35.3 1.3 23 87-109 22-44 (202)
269 PRK07530 3-hydroxybutyryl-CoA 57.7 17 0.00038 33.4 4.7 30 87-119 5-34 (292)
270 PRK06444 prephenate dehydrogen 57.2 9.9 0.00021 34.0 2.9 35 87-121 1-40 (197)
271 COG1064 AdhP Zn-dependent alco 57.0 68 0.0015 31.4 8.8 95 86-210 167-262 (339)
272 PRK06130 3-hydroxybutyryl-CoA 57.0 17 0.00037 33.6 4.5 30 87-119 5-34 (311)
273 PF04321 RmlD_sub_bind: RmlD s 56.6 20 0.00043 33.1 4.9 31 87-120 1-32 (286)
274 PRK12771 putative glutamate sy 56.4 4.8 0.0001 40.8 0.8 31 86-119 137-167 (564)
275 PRK09424 pntA NAD(P) transhydr 55.2 76 0.0016 32.6 9.1 24 85-108 164-187 (509)
276 cd08277 liver_alcohol_DH_like 55.1 50 0.0011 31.1 7.4 30 87-119 186-216 (365)
277 PLN02572 UDP-sulfoquinovose sy 55.1 25 0.00054 34.8 5.5 32 85-119 46-78 (442)
278 COG0743 Dxr 1-deoxy-D-xylulose 55.0 19 0.00041 35.8 4.6 44 87-131 2-46 (385)
279 PRK08655 prephenate dehydrogen 54.9 18 0.00038 36.0 4.5 30 87-119 1-31 (437)
280 PRK07531 bifunctional 3-hydrox 54.8 19 0.0004 36.3 4.7 30 87-119 5-34 (495)
281 TIGR00518 alaDH alanine dehydr 54.7 21 0.00046 34.7 4.9 32 85-119 166-197 (370)
282 COG0702 Predicted nucleoside-d 54.5 18 0.00039 31.6 4.1 30 87-119 1-31 (275)
283 PRK07201 short chain dehydroge 54.5 97 0.0021 31.4 9.8 33 87-120 1-34 (657)
284 PRK02705 murD UDP-N-acetylmura 54.4 26 0.00055 34.2 5.5 30 88-121 2-31 (459)
285 TIGR01759 MalateDH-SF1 malate 54.3 27 0.00059 33.5 5.5 25 85-109 2-27 (323)
286 PRK00683 murD UDP-N-acetylmura 54.3 18 0.00038 35.2 4.3 82 87-202 4-85 (418)
287 TIGR02440 FadJ fatty oxidation 54.1 58 0.0013 34.4 8.4 30 86-117 304-333 (699)
288 PF00670 AdoHcyase_NAD: S-aden 53.7 22 0.00047 31.3 4.4 23 87-109 24-46 (162)
289 cd08294 leukotriene_B4_DH_like 53.1 53 0.0011 29.6 7.0 90 87-202 145-236 (329)
290 PLN02166 dTDP-glucose 4,6-dehy 53.0 21 0.00045 35.3 4.7 33 85-120 119-152 (436)
291 TIGR01035 hemA glutamyl-tRNA r 53.0 20 0.00043 35.3 4.5 33 87-121 181-213 (417)
292 PRK15057 UDP-glucose 6-dehydro 52.1 19 0.00042 35.3 4.2 39 87-131 1-39 (388)
293 PRK08219 short chain dehydroge 51.9 23 0.0005 30.0 4.2 30 86-119 3-33 (227)
294 PRK07877 hypothetical protein; 51.6 8.5 0.00018 41.0 1.8 109 86-202 107-223 (722)
295 cd08237 ribitol-5-phosphate_DH 51.5 94 0.002 29.0 8.6 20 87-106 165-184 (341)
296 PTZ00142 6-phosphogluconate de 51.3 18 0.00039 36.5 4.0 31 87-120 2-32 (470)
297 TIGR02818 adh_III_F_hyde S-(hy 51.1 86 0.0019 29.6 8.3 29 87-118 187-216 (368)
298 PLN02778 3,5-epimerase/4-reduc 51.1 18 0.00039 33.4 3.7 25 85-109 8-33 (298)
299 TIGR03451 mycoS_dep_FDH mycoth 50.3 70 0.0015 29.9 7.5 30 87-119 178-208 (358)
300 TIGR00507 aroE shikimate 5-deh 50.2 68 0.0015 29.3 7.3 31 87-120 118-148 (270)
301 PRK11908 NAD-dependent epimera 50.1 26 0.00057 32.5 4.6 31 87-119 2-33 (347)
302 PRK15181 Vi polysaccharide bio 49.7 26 0.00056 32.9 4.5 31 86-119 15-46 (348)
303 PLN02206 UDP-glucuronate decar 49.5 32 0.00069 34.1 5.3 32 85-119 118-150 (442)
304 PLN02695 GDP-D-mannose-3',5'-e 49.3 26 0.00057 33.4 4.6 31 86-119 21-52 (370)
305 TIGR00873 gnd 6-phosphoglucona 49.2 19 0.00041 36.4 3.7 31 88-121 1-31 (467)
306 cd01336 MDH_cytoplasmic_cytoso 49.1 30 0.00066 33.0 5.0 25 85-109 1-26 (325)
307 PLN02514 cinnamyl-alcohol dehy 49.1 66 0.0014 30.3 7.2 138 87-261 182-320 (357)
308 PRK10675 UDP-galactose-4-epime 48.9 27 0.00059 31.9 4.5 30 87-119 1-31 (338)
309 cd05283 CAD1 Cinnamyl alcohol 48.8 1.1E+02 0.0024 28.1 8.5 87 87-201 171-257 (337)
310 PRK04148 hypothetical protein; 48.8 31 0.00067 29.3 4.4 44 59-119 3-46 (134)
311 TIGR01757 Malate-DH_plant mala 48.8 37 0.0008 33.6 5.6 25 85-109 43-68 (387)
312 PLN02350 phosphogluconate dehy 48.7 20 0.00044 36.5 3.9 33 86-121 6-38 (493)
313 PRK06988 putative formyltransf 48.6 26 0.00056 33.3 4.4 30 86-118 2-31 (312)
314 PLN02240 UDP-glucose 4-epimera 48.6 31 0.00068 31.8 4.8 32 85-119 4-36 (352)
315 cd01484 E1-2_like Ubiquitin ac 48.5 8.7 0.00019 35.3 1.1 102 88-196 1-111 (234)
316 cd01065 NAD_bind_Shikimate_DH 48.4 21 0.00046 29.0 3.3 22 87-108 20-41 (155)
317 PRK05597 molybdopterin biosynt 48.2 11 0.00025 36.3 1.9 24 86-109 28-51 (355)
318 TIGR01761 thiaz-red thiazoliny 48.1 28 0.00061 33.8 4.6 38 86-126 3-40 (343)
319 cd05292 LDH_2 A subgroup of L- 47.8 29 0.00063 32.6 4.6 23 87-109 1-23 (308)
320 PRK15182 Vi polysaccharide bio 47.6 24 0.00052 35.0 4.1 31 86-120 6-36 (425)
321 PLN02657 3,8-divinyl protochlo 47.3 30 0.00065 33.5 4.7 31 86-119 60-91 (390)
322 PRK10537 voltage-gated potassi 47.2 32 0.00069 34.0 4.9 30 87-119 241-270 (393)
323 PLN02827 Alcohol dehydrogenase 47.1 85 0.0018 29.9 7.7 22 87-108 195-216 (378)
324 COG5322 Predicted dehydrogenas 46.9 65 0.0014 31.3 6.7 44 177-224 231-275 (351)
325 PRK08293 3-hydroxybutyryl-CoA 46.7 32 0.00068 31.7 4.5 29 87-118 4-32 (287)
326 PRK14192 bifunctional 5,10-met 46.7 75 0.0016 30.0 7.1 22 87-108 160-182 (283)
327 PLN00112 malate dehydrogenase 46.6 14 0.0003 37.3 2.3 25 84-108 98-123 (444)
328 PRK10309 galactitol-1-phosphat 46.5 88 0.0019 28.9 7.5 22 87-108 162-183 (347)
329 cd08301 alcohol_DH_plants Plan 46.5 38 0.00082 31.8 5.1 30 87-119 189-219 (369)
330 PLN02740 Alcohol dehydrogenase 46.3 41 0.00089 31.9 5.4 30 87-119 200-230 (381)
331 PLN02260 probable rhamnose bio 46.1 31 0.00067 35.6 4.8 26 84-109 378-404 (668)
332 PRK00045 hemA glutamyl-tRNA re 46.0 29 0.00063 34.2 4.4 32 87-120 183-214 (423)
333 KOG0022 Alcohol dehydrogenase, 46.0 34 0.00074 33.8 4.7 32 86-119 193-224 (375)
334 cd08269 Zn_ADH9 Alcohol dehydr 45.4 87 0.0019 27.8 7.1 90 87-201 131-223 (312)
335 PRK04663 murD UDP-N-acetylmura 45.4 1.6E+02 0.0035 28.8 9.5 86 87-202 8-94 (438)
336 TIGR01381 E1_like_apg7 E1-like 45.2 12 0.00026 39.6 1.7 24 86-109 338-361 (664)
337 PF01488 Shikimate_DH: Shikima 45.2 32 0.0007 28.3 3.9 94 87-208 13-108 (135)
338 cd08235 iditol_2_DH_like L-idi 44.7 1.9E+02 0.0042 26.2 9.4 29 87-118 167-196 (343)
339 cd08300 alcohol_DH_class_III c 44.7 1.1E+02 0.0024 28.7 8.0 29 87-118 188-217 (368)
340 TIGR02441 fa_ox_alpha_mit fatt 44.7 17 0.00037 38.7 2.7 32 85-119 334-365 (737)
341 PRK07326 short chain dehydroge 44.6 39 0.00084 29.0 4.5 30 87-119 7-37 (237)
342 PRK02318 mannitol-1-phosphate 43.9 29 0.00063 33.6 4.0 31 87-119 1-31 (381)
343 PRK07066 3-hydroxybutyryl-CoA 43.8 36 0.00077 32.7 4.5 30 87-119 8-37 (321)
344 PRK07411 hypothetical protein; 43.7 10 0.00022 37.1 0.9 109 86-202 38-155 (390)
345 COG1023 Gnd Predicted 6-phosph 43.6 25 0.00054 33.6 3.3 29 87-118 1-29 (300)
346 cd08255 2-desacetyl-2-hydroxye 43.6 97 0.0021 27.3 7.0 86 87-202 99-185 (277)
347 cd00704 MDH Malate dehydrogena 43.5 57 0.0012 31.2 5.9 23 87-109 1-24 (323)
348 cd08262 Zn_ADH8 Alcohol dehydr 43.3 1.3E+02 0.0027 27.5 7.9 22 87-108 163-184 (341)
349 cd01339 LDH-like_MDH L-lactate 43.2 29 0.00064 32.2 3.8 28 89-118 1-28 (300)
350 PRK05600 thiamine biosynthesis 43.1 12 0.00027 36.4 1.3 113 86-202 41-158 (370)
351 PF02558 ApbA: Ketopantoate re 43.0 37 0.00079 27.6 3.9 30 89-121 1-30 (151)
352 PRK11730 fadB multifunctional 42.1 2.1E+02 0.0046 30.4 10.3 30 87-119 314-343 (715)
353 cd08245 CAD Cinnamyl alcohol d 42.1 1.2E+02 0.0026 27.4 7.6 93 87-207 164-256 (330)
354 PRK06719 precorrin-2 dehydroge 42.1 50 0.0011 28.2 4.8 30 87-119 14-43 (157)
355 cd08278 benzyl_alcohol_DH Benz 42.0 1.2E+02 0.0025 28.6 7.7 28 175-202 253-280 (365)
356 PF00070 Pyr_redox: Pyridine n 42.0 63 0.0014 23.7 4.8 22 88-109 1-22 (80)
357 cd08231 MDR_TM0436_like Hypoth 41.7 1.3E+02 0.0028 27.8 7.9 30 87-119 179-209 (361)
358 PRK14851 hypothetical protein; 41.6 11 0.00023 40.0 0.6 98 86-187 43-144 (679)
359 PRK09291 short chain dehydroge 41.4 47 0.001 28.9 4.6 30 87-119 3-33 (257)
360 PF00899 ThiF: ThiF family; I 40.8 32 0.00069 27.9 3.2 107 87-198 3-114 (135)
361 KOG2380 Prephenate dehydrogena 40.6 28 0.00061 34.8 3.3 25 85-109 51-75 (480)
362 PRK05653 fabG 3-ketoacyl-(acyl 40.5 53 0.0012 27.9 4.8 31 87-120 6-37 (246)
363 PRK08017 oxidoreductase; Provi 40.3 50 0.0011 28.6 4.6 30 87-119 3-33 (256)
364 PRK05708 2-dehydropantoate 2-r 39.8 44 0.00095 31.3 4.4 23 86-108 2-24 (305)
365 KOG2250 Glutamate/leucine/phen 39.6 2.4E+02 0.0051 29.3 9.7 59 53-121 225-283 (514)
366 cd08258 Zn_ADH4 Alcohol dehydr 39.5 2.8E+02 0.006 25.2 9.6 139 87-255 166-305 (306)
367 TIGR03466 HpnA hopanoid-associ 39.5 43 0.00092 30.2 4.2 30 88-120 2-32 (328)
368 COG0451 WcaG Nucleoside-diphos 39.3 45 0.00099 29.7 4.3 31 88-121 2-33 (314)
369 TIGR02437 FadB fatty oxidation 39.3 1.4E+02 0.003 31.8 8.5 32 85-119 312-343 (714)
370 PLN02583 cinnamoyl-CoA reducta 39.1 53 0.0012 30.0 4.8 29 87-118 7-36 (297)
371 PLN02353 probable UDP-glucose 39.0 47 0.001 33.6 4.8 32 87-119 2-33 (473)
372 PLN00198 anthocyanidin reducta 39.0 48 0.001 30.6 4.5 30 86-118 9-39 (338)
373 PF01370 Epimerase: NAD depend 39.0 61 0.0013 27.5 4.9 30 89-121 1-31 (236)
374 PRK07023 short chain dehydroge 38.9 48 0.001 28.8 4.3 29 87-118 2-31 (243)
375 cd00650 LDH_MDH_like NAD-depen 38.8 65 0.0014 29.3 5.3 20 89-108 1-21 (263)
376 cd05188 MDR Medium chain reduc 38.4 2.4E+02 0.0053 24.0 8.6 30 87-119 136-165 (271)
377 cd08233 butanediol_DH_like (2R 38.4 1.5E+02 0.0033 27.3 7.7 30 87-119 174-204 (351)
378 KOG3923 D-aspartate oxidase [A 38.4 47 0.001 32.5 4.4 37 85-121 2-42 (342)
379 PLN02896 cinnamyl-alcohol dehy 38.3 52 0.0011 30.7 4.7 30 87-119 11-41 (353)
380 TIGR01214 rmlD dTDP-4-dehydror 38.0 49 0.0011 29.4 4.3 29 88-119 1-30 (287)
381 cd05280 MDR_yhdh_yhfp Yhdh and 38.0 1.4E+02 0.003 26.7 7.2 88 88-201 149-237 (325)
382 PRK14989 nitrite reductase sub 37.7 1.6E+02 0.0035 32.1 8.7 37 85-121 2-39 (847)
383 PRK07236 hypothetical protein; 37.5 52 0.0011 31.1 4.6 33 84-119 4-36 (386)
384 cd08238 sorbose_phosphate_red 37.5 1.7E+02 0.0036 28.2 8.1 34 175-208 256-289 (410)
385 PLN03154 putative allyl alcoho 37.1 1.6E+02 0.0034 27.7 7.7 30 87-119 160-190 (348)
386 TIGR01181 dTDP_gluc_dehyt dTDP 37.0 51 0.0011 29.3 4.2 31 88-119 1-32 (317)
387 PRK06153 hypothetical protein; 36.9 24 0.00052 35.2 2.3 134 55-196 149-286 (393)
388 PRK12745 3-ketoacyl-(acyl-carr 36.9 61 0.0013 28.1 4.6 30 87-119 3-33 (256)
389 PRK03815 murD UDP-N-acetylmura 36.8 40 0.00088 33.0 3.8 22 87-109 1-22 (401)
390 PF01073 3Beta_HSD: 3-beta hyd 36.8 94 0.002 28.7 6.1 19 91-109 2-21 (280)
391 cd05279 Zn_ADH1 Liver alcohol 36.7 1E+02 0.0023 28.9 6.5 22 87-108 185-206 (365)
392 PRK08223 hypothetical protein; 36.3 22 0.00048 33.9 1.8 97 86-187 27-128 (287)
393 TIGR02819 fdhA_non_GSH formald 36.0 1.7E+02 0.0037 28.3 7.9 32 87-121 187-218 (393)
394 KOG1399 Flavin-containing mono 35.8 48 0.001 33.4 4.2 24 85-108 5-28 (448)
395 cd08254 hydroxyacyl_CoA_DH 6-h 35.8 2.4E+02 0.0051 25.4 8.4 92 87-202 167-258 (338)
396 PRK10538 malonic semialdehyde 35.7 62 0.0014 28.3 4.5 30 87-119 1-31 (248)
397 TIGR01763 MalateDH_bact malate 35.3 59 0.0013 30.7 4.5 142 87-260 2-162 (305)
398 PRK14806 bifunctional cyclohex 35.2 52 0.0011 34.4 4.5 32 87-119 4-35 (735)
399 TIGR00715 precor6x_red precorr 35.2 39 0.00084 31.4 3.2 27 87-117 1-28 (256)
400 PRK07878 molybdopterin biosynt 35.1 17 0.00036 35.6 0.8 24 86-109 42-65 (392)
401 PLN02260 probable rhamnose bio 35.0 56 0.0012 33.7 4.6 34 86-120 6-40 (668)
402 cd08234 threonine_DH_like L-th 34.8 2E+02 0.0044 25.9 7.8 91 87-202 161-252 (334)
403 cd08295 double_bond_reductase_ 34.8 1.9E+02 0.004 26.6 7.7 30 87-119 153-183 (338)
404 cd01485 E1-1_like Ubiquitin ac 34.2 35 0.00077 30.1 2.7 22 87-108 20-41 (198)
405 cd00300 LDH_like L-lactate deh 34.2 69 0.0015 30.0 4.8 21 89-109 1-21 (300)
406 cd08284 FDH_like_2 Glutathione 34.1 1.5E+02 0.0032 27.0 6.9 29 87-118 169-198 (344)
407 PRK07577 short chain dehydroge 34.1 73 0.0016 27.2 4.6 30 87-119 4-34 (234)
408 PRK06019 phosphoribosylaminoim 34.0 66 0.0014 30.9 4.7 31 87-120 3-33 (372)
409 PF00107 ADH_zinc_N: Zinc-bind 33.9 15 0.00032 28.9 0.2 36 175-210 57-92 (130)
410 TIGR02825 B4_12hDH leukotriene 33.8 2E+02 0.0044 26.1 7.7 30 87-119 140-170 (325)
411 cd08236 sugar_DH NAD(P)-depend 33.7 2.3E+02 0.005 25.8 8.1 92 87-202 161-253 (343)
412 PRK10217 dTDP-glucose 4,6-dehy 33.6 58 0.0013 30.1 4.1 23 87-109 2-25 (355)
413 PRK10083 putative oxidoreducta 33.5 1.4E+02 0.0029 27.3 6.5 20 87-106 162-181 (339)
414 TIGR01082 murC UDP-N-acetylmur 33.5 1.7E+02 0.0036 28.7 7.5 82 88-201 1-83 (448)
415 cd08232 idonate-5-DH L-idonate 33.3 2.7E+02 0.0058 25.3 8.5 27 176-202 231-257 (339)
416 PRK12826 3-ketoacyl-(acyl-carr 33.2 71 0.0015 27.4 4.4 30 87-119 7-37 (251)
417 cd08296 CAD_like Cinnamyl alco 33.0 1.1E+02 0.0025 27.9 6.0 95 87-207 165-259 (333)
418 cd08260 Zn_ADH6 Alcohol dehydr 33.0 1.6E+02 0.0034 27.0 6.9 30 87-119 167-196 (345)
419 PRK09987 dTDP-4-dehydrorhamnos 32.9 60 0.0013 29.8 4.1 23 87-109 1-24 (299)
420 TIGR01179 galE UDP-glucose-4-e 32.7 72 0.0016 28.4 4.5 29 88-119 1-30 (328)
421 PRK05086 malate dehydrogenase; 32.7 75 0.0016 30.1 4.8 21 87-107 1-22 (312)
422 cd08285 NADP_ADH NADP(H)-depen 32.6 1.9E+02 0.0042 26.6 7.5 22 87-108 168-189 (351)
423 cd05288 PGDH Prostaglandin deh 32.5 1.8E+02 0.0039 26.2 7.1 30 87-119 147-177 (329)
424 cd01080 NAD_bind_m-THF_DH_Cycl 32.3 77 0.0017 27.5 4.4 23 87-109 45-68 (168)
425 PRK12825 fabG 3-ketoacyl-(acyl 31.8 83 0.0018 26.7 4.5 23 87-109 7-30 (249)
426 cd01337 MDH_glyoxysomal_mitoch 31.7 49 0.0011 31.6 3.4 23 87-109 1-24 (310)
427 cd08289 MDR_yhfp_like Yhfp put 31.5 1.5E+02 0.0033 26.6 6.5 96 87-208 148-244 (326)
428 cd01492 Aos1_SUMO Ubiquitin ac 31.3 39 0.00085 29.8 2.5 23 87-109 22-44 (197)
429 PRK08163 salicylate hydroxylas 31.3 74 0.0016 29.9 4.5 31 85-118 3-33 (396)
430 TIGR02279 PaaC-3OHAcCoADH 3-hy 31.2 69 0.0015 32.6 4.5 30 87-119 6-35 (503)
431 PRK15076 alpha-galactosidase; 31.2 44 0.00096 33.3 3.1 13 87-99 2-14 (431)
432 PTZ00325 malate dehydrogenase; 31.2 51 0.0011 31.7 3.4 24 85-108 7-31 (321)
433 PRK07231 fabG 3-ketoacyl-(acyl 31.2 85 0.0018 27.0 4.5 30 87-119 6-36 (251)
434 PRK14620 NAD(P)H-dependent gly 31.0 78 0.0017 29.5 4.5 22 87-108 1-22 (326)
435 PRK12320 hypothetical protein; 31.0 68 0.0015 34.3 4.6 31 87-120 1-32 (699)
436 TIGR01472 gmd GDP-mannose 4,6- 30.8 74 0.0016 29.5 4.4 29 88-119 2-31 (343)
437 PRK07454 short chain dehydroge 30.5 91 0.002 26.9 4.6 30 87-119 7-37 (241)
438 KOG0024 Sorbitol dehydrogenase 30.5 55 0.0012 32.3 3.5 32 176-208 242-273 (354)
439 PF01232 Mannitol_dh: Mannitol 30.5 64 0.0014 27.2 3.6 35 87-121 1-38 (151)
440 PLN02927 antheraxanthin epoxid 30.3 2.3E+02 0.0049 30.2 8.2 24 85-108 80-103 (668)
441 cd08246 crotonyl_coA_red croto 30.0 4E+02 0.0086 25.1 9.2 29 87-118 195-224 (393)
442 TIGR03570 NeuD_NnaD sugar O-ac 29.7 92 0.002 26.0 4.4 31 88-121 1-31 (201)
443 cd08270 MDR4 Medium chain dehy 29.7 3.9E+02 0.0085 23.6 8.9 88 87-207 134-222 (305)
444 PRK09135 pteridine reductase; 29.7 98 0.0021 26.5 4.7 30 87-119 7-37 (249)
445 PRK05565 fabG 3-ketoacyl-(acyl 29.4 96 0.0021 26.5 4.6 29 87-118 6-35 (247)
446 cd08263 Zn_ADH10 Alcohol dehyd 29.2 3.3E+02 0.0071 25.4 8.4 30 87-119 189-219 (367)
447 PRK06046 alanine dehydrogenase 29.1 90 0.002 29.6 4.7 34 86-121 129-162 (326)
448 PRK00711 D-amino acid dehydrog 29.0 90 0.0019 29.6 4.7 31 87-120 1-31 (416)
449 TIGR01470 cysG_Nterm siroheme 28.8 3.3E+02 0.0072 24.2 8.0 30 87-119 10-39 (205)
450 cd05281 TDH Threonine dehydrog 28.7 3.9E+02 0.0084 24.5 8.7 29 87-118 165-194 (341)
451 PRK12827 short chain dehydroge 28.6 99 0.0022 26.5 4.5 30 87-119 7-37 (249)
452 PRK08177 short chain dehydroge 28.6 96 0.0021 26.6 4.4 30 88-120 3-33 (225)
453 TIGR01777 yfcH conserved hypot 28.5 68 0.0015 28.3 3.6 29 89-120 1-30 (292)
454 PLN02858 fructose-bisphosphate 28.4 70 0.0015 36.7 4.4 31 86-119 324-354 (1378)
455 PF07991 IlvN: Acetohydroxy ac 28.4 95 0.0021 27.5 4.3 32 87-121 5-36 (165)
456 PRK12824 acetoacetyl-CoA reduc 28.4 1E+02 0.0022 26.3 4.6 29 87-118 3-32 (245)
457 PRK09009 C factor cell-cell si 28.3 59 0.0013 28.0 3.0 22 87-108 1-23 (235)
458 PLN02948 phosphoribosylaminoim 28.3 1.2E+02 0.0026 31.5 5.7 33 84-119 20-52 (577)
459 PRK12829 short chain dehydroge 28.2 97 0.0021 26.9 4.4 30 87-119 12-42 (264)
460 PRK09126 hypothetical protein; 28.1 92 0.002 29.3 4.5 33 85-120 2-34 (392)
461 PRK06947 glucose-1-dehydrogena 28.1 99 0.0021 26.7 4.4 29 86-117 2-31 (248)
462 PRK05884 short chain dehydroge 28.1 93 0.002 27.1 4.3 28 88-118 2-30 (223)
463 PRK05866 short chain dehydroge 27.8 1.1E+02 0.0024 27.9 4.9 30 87-119 41-71 (293)
464 PRK07102 short chain dehydroge 27.7 1E+02 0.0022 26.7 4.4 29 87-118 2-31 (243)
465 PRK12409 D-amino acid dehydrog 27.7 92 0.002 29.6 4.5 31 87-120 2-32 (410)
466 PRK08267 short chain dehydroge 27.6 1E+02 0.0022 27.0 4.5 29 88-119 3-32 (260)
467 cd08292 ETR_like_2 2-enoyl thi 27.6 2.3E+02 0.005 25.3 6.9 32 87-121 141-173 (324)
468 PRK08125 bifunctional UDP-gluc 27.5 86 0.0019 32.6 4.6 33 86-120 315-348 (660)
469 PRK10084 dTDP-glucose 4,6 dehy 27.5 60 0.0013 30.0 3.1 23 87-109 1-24 (352)
470 PF12338 RbcS: Ribulose-1,5-bi 27.4 34 0.00073 24.2 1.1 20 35-54 22-41 (45)
471 PRK11259 solA N-methyltryptoph 27.4 1E+02 0.0022 28.7 4.6 33 85-120 2-34 (376)
472 PRK11150 rfaD ADP-L-glycero-D- 27.2 90 0.0019 28.2 4.2 27 89-118 2-29 (308)
473 PLN00203 glutamyl-tRNA reducta 27.0 64 0.0014 33.1 3.5 34 86-121 266-299 (519)
474 cd08248 RTN4I1 Human Reticulon 27.0 3E+02 0.0064 25.0 7.6 31 87-120 164-195 (350)
475 PRK06180 short chain dehydroge 26.9 1.1E+02 0.0024 27.3 4.6 30 87-119 5-35 (277)
476 PRK06182 short chain dehydroge 26.8 1.1E+02 0.0024 27.1 4.7 30 87-119 4-34 (273)
477 PRK08618 ornithine cyclodeamin 26.7 1.1E+02 0.0024 29.0 4.8 34 86-121 127-160 (325)
478 cd01078 NAD_bind_H4MPT_DH NADP 26.6 1.2E+02 0.0026 26.0 4.7 30 87-119 29-59 (194)
479 PRK12384 sorbitol-6-phosphate 26.6 1.2E+02 0.0025 26.6 4.6 30 87-119 3-33 (259)
480 COG1893 ApbA Ketopantoate redu 26.5 90 0.0019 29.6 4.2 23 87-109 1-23 (307)
481 PRK12828 short chain dehydroge 26.5 1.1E+02 0.0024 25.9 4.4 30 87-119 8-38 (239)
482 PLN02702 L-idonate 5-dehydroge 26.5 2.8E+02 0.0061 25.8 7.5 27 176-202 254-280 (364)
483 cd08240 6_hydroxyhexanoate_dh_ 26.4 3E+02 0.0066 25.2 7.6 26 176-201 243-268 (350)
484 PLN02650 dihydroflavonol-4-red 26.4 95 0.002 28.9 4.2 29 87-118 6-35 (351)
485 PF01494 FAD_binding_3: FAD bi 26.4 1.2E+02 0.0025 27.2 4.7 31 87-120 2-32 (356)
486 cd08287 FDH_like_ADH3 formalde 26.3 2.7E+02 0.0059 25.3 7.2 70 176-254 237-307 (345)
487 PTZ00357 methyltransferase; Pr 26.0 2.1E+02 0.0046 31.4 7.0 36 85-121 700-737 (1072)
488 PRK12809 putative oxidoreducta 26.0 61 0.0013 33.6 3.1 31 86-119 310-340 (639)
489 PRK07074 short chain dehydroge 26.0 1.2E+02 0.0026 26.5 4.6 29 88-119 4-33 (257)
490 PRK08063 enoyl-(acyl carrier p 25.9 1.2E+02 0.0027 26.1 4.6 28 87-117 5-33 (250)
491 cd08249 enoyl_reductase_like e 25.9 3.1E+02 0.0068 25.2 7.6 96 87-207 156-254 (339)
492 PLN02653 GDP-mannose 4,6-dehyd 25.9 1E+02 0.0022 28.5 4.3 30 87-119 7-37 (340)
493 PRK07774 short chain dehydroge 25.8 1.2E+02 0.0027 26.1 4.6 30 87-119 7-37 (250)
494 PRK05714 2-octaprenyl-3-methyl 25.7 1E+02 0.0022 29.3 4.4 30 87-119 3-32 (405)
495 PRK07578 short chain dehydroge 25.7 1.3E+02 0.0028 25.3 4.7 28 88-119 2-30 (199)
496 PRK08243 4-hydroxybenzoate 3-m 25.6 1.1E+02 0.0023 29.2 4.5 31 86-119 2-32 (392)
497 TIGR03376 glycerol3P_DH glycer 25.5 78 0.0017 30.6 3.6 21 88-108 1-21 (342)
498 COG3268 Uncharacterized conser 25.4 33 0.00072 34.0 1.0 26 84-109 4-30 (382)
499 PRK12439 NAD(P)H-dependent gly 25.4 74 0.0016 30.3 3.4 24 85-108 6-29 (341)
500 PRK05993 short chain dehydroge 25.4 1.2E+02 0.0026 27.1 4.6 30 87-119 5-35 (277)
No 1
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=2.5e-72 Score=545.55 Aligned_cols=255 Identities=77% Similarity=1.154 Sum_probs=234.1
Q ss_pred ccCCCCCCCCCcccccCCCCCCCCCCcccccccccccccCcccccccccccccCCcCHHHHHHhhccccccCCCCCcccc
Q 023894 3 SHSALAPSRIPAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKE 82 (275)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (275)
+|||||++|||+.+|++|+++ .++.+|++|+|||++++++|.....+.+|.+.++.++..+..+ ....+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 71 (442)
T PLN02237 1 THAALASSRIPATTRLPSKAS--------HKRLEVAEFSGLRASSCVTFAKNAREASFFDVVASQLAPKVAG-STPVRGE 71 (442)
T ss_pred CcchhcccCCccccccccccc--------cccccccccccccccccccccccccchhHHHHhhhhhhhhhcc-ccccccc
Confidence 699999999999999999886 2667899999999999999988778889999999999876333 5566677
Q ss_pred ccceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEE
Q 023894 83 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (275)
Q Consensus 83 ~~~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~ 162 (275)
++|++||||||||||||+++|+++++.+++++||+|||+.++++++|||||||+||+|+++|++.+++.|.+||+.|+|+
T Consensus 72 ~~~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~ 151 (442)
T PLN02237 72 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVV 151 (442)
T ss_pred ccceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEE
Confidence 78889999999999999999998876435699999999999999999999999999999999864678999999999999
Q ss_pred ecCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcc
Q 023894 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCM 242 (275)
Q Consensus 163 ~~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCT 242 (275)
++++|+++||+++|+||||||||.|++++++++|+++|||||++|||++++|+|+||||||++.|++..++||| |||||
T Consensus 152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IIS-naSCT 230 (442)
T PLN02237 152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVS-NASCT 230 (442)
T ss_pred EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEE-CCchH
Confidence 99999999999999999999999999999999999999999999999988778999999999999863368999 99999
Q ss_pred hhhhHHHHHHhhhhcCceEEEEEee
Q 023894 243 LIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 243 Tn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
||||+|++|+|||+|||+++.|||.
T Consensus 231 TNcLAPvlkvL~d~fGI~~g~mTTv 255 (442)
T PLN02237 231 TNCLAPFVKVLDEEFGIVKGTMTTT 255 (442)
T ss_pred HHHHHHHHHHHHHhcCeeEEEEEEE
Confidence 9999999999999999999999985
No 2
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.5e-62 Score=473.11 Aligned_cols=227 Identities=58% Similarity=0.938 Sum_probs=205.3
Q ss_pred ccccccccCcccccccccccccCCcCHHHHHHhhccccccCCCCCccccccceeeEEEECCChhHHHHHHHHHhCCCCCc
Q 023894 34 RLDVAEFAGLRANAGATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPL 113 (275)
Q Consensus 34 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaInGfGrIGR~vlR~l~er~~~~l 113 (275)
..+|++|+|||++++++|+......+| +.+++..+ .......+..++|++||||||||||||.++|+|+++.++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~kVaInGfGrIGR~vlr~l~~~~~~~~ 87 (395)
T PLN03096 12 SKGFSEFSGLKSSSAVTFGKRSDSLDF---VVFATSAV-SSSGGARRAVTEAKIKVAINGFGRIGRNFLRCWHGRKDSPL 87 (395)
T ss_pred cCcccccccccccCcccccccccchhh---hhhhhhhh-hccccccccccccccEEEEECcCHHHHHHHHHHHhCCCCCe
Confidence 359999999999898888665555555 77777654 22234556677788999999999999999999998866779
Q ss_pred eEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCCCCCCcccccccEEEcCCCCCCChhhH
Q 023894 114 DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA 193 (275)
Q Consensus 114 ~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~dP~~i~w~~~giDiVie~TG~f~~~e~a 193 (275)
++++|||+.++++++|||+|||+||+|+++++..+++.|++||++|+|++++||+++||.++|+||||||||.|++++++
T Consensus 88 evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a 167 (395)
T PLN03096 88 DVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGA 167 (395)
T ss_pred EEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcccccccccCCCEEEECcchhhhHHHH
Confidence 99999999999999999999999999999998656789999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcchhhhHHHHHHhhhhcCceEEEEEee
Q 023894 194 GKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCMLIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 194 ~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTTn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
++|+++|||||+||+|.++ |+|+||||||++.|++. ++||| |||||||||+|++|+|||+|||+++.|||.
T Consensus 168 ~~hl~aGAkkV~iSap~~~-~~ptvV~GVN~~~l~~~-~~IIS-naSCTTn~LAp~lkvL~~~fGI~~g~mTTi 238 (395)
T PLN03096 168 GKHIQAGAKKVLITAPGKG-DIPTYVVGVNADDYKHS-DPIIS-NASCTTNCLAPFVKVLDQKFGIIKGTMTTT 238 (395)
T ss_pred HHHHHCCCEEEEeCCCCCC-CCCeEeCccCHHHhccC-CCEEE-CCchHHHHHHHHHHHHHHhcCeeEEEEEEE
Confidence 9999999999999999765 78999999999999876 88999 999999999999999999999999999985
No 3
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-61 Score=460.40 Aligned_cols=182 Identities=37% Similarity=0.607 Sum_probs=168.2
Q ss_pred cceeeEEEECCChhHHHHHHHHHhCC--CCCceEEEEcCC-CChhhhhhhccccccccccCceEEEe-------cCCeEE
Q 023894 84 VAKLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIV-------DNETIS 153 (275)
Q Consensus 84 ~~~~kVaInGfGrIGR~vlR~l~er~--~~~l~iVaInd~-~~~~~~a~LLkyDS~hG~f~~~v~~~-------e~~~l~ 153 (275)
+|++||||||||||||+++|+++++. .+++++|+|||+ .++++++|||||||+||+|+++|+++ +++.|+
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ 80 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLV 80 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEE
Confidence 36689999999999999999988752 246999999995 89999999999999999999999862 578899
Q ss_pred ECCeEEEEE-ecCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCC
Q 023894 154 VDGKLIKVV-SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVA 232 (275)
Q Consensus 154 inGk~I~V~-~~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~ 232 (275)
+||++|+++ +++||+++||+++|+||||||||.|++++.+++||++||||||||||+++ +.|||||||||+.|++..+
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d-~~~t~V~GVN~~~y~~~~~ 159 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASG-GAKTIVMGVNQHEYSPTEH 159 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCC-CCceEEEcCChHHcCcccC
Confidence 999999986 99999999999999999999999999999999999999999999999876 4589999999999987227
Q ss_pred eeeeeCCCcchhhhHHHHHHh-hhhcCceEEEEEee
Q 023894 233 NIVRSVYSCMLIKMATLFHFI-SLLTNLASAAMLLA 267 (275)
Q Consensus 233 ~IIS~nASCTTn~LaPvlkvL-~~~fgI~~v~vt~~ 267 (275)
+||| |||||||||+|++|+| ||+|||+++.|||+
T Consensus 160 ~IiS-nASCTTNcLAP~~kvL~~~~fGI~~g~mTTV 194 (361)
T PTZ00434 160 HVVS-NASCTTNCLAPIVHVLTKEGFGIETGLMTTI 194 (361)
T ss_pred cEEE-CCChHHHhhHHHHHHhhcCCcceEEEEEEEE
Confidence 8999 9999999999999999 89999999999985
No 4
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=3.5e-60 Score=462.71 Aligned_cols=210 Identities=26% Similarity=0.473 Sum_probs=191.5
Q ss_pred cccccccCCcCHHHHHHhhccccccCCCCCccccccceeeEEEECCChhHHHHHHHHHhCC--CCCceEEEEc----CCC
Q 023894 49 ATYATGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRK--DSPLDVVVVN----DSG 122 (275)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaInGfGrIGR~vlR~l~er~--~~~l~iVaIn----d~~ 122 (275)
+.|..++++.++++||+++|++.+++... .++.||||||||||||+++|+++++. +.++++|+|| |..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~ 169 (477)
T PRK08289 96 VKYKAEGDGSDVEAFVAEELADAVGGADD------IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEG 169 (477)
T ss_pred HHHhhccCCCcHHHHHHHHHhhhhcCCCC------CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCC
Confidence 45655577889999999999997665321 25789999999999999999999863 2469999995 568
Q ss_pred ChhhhhhhccccccccccCceEEEe-cCCeEEECCeEEEEEecCCCCCCCccccccc--EEEcCCCCCCChhhHHHHHH-
Q 023894 123 GVKNASHLLKYDSLLGTFKADVKIV-DNETISVDGKLIKVVSNRDPLQLPWAELGID--IVIEGTGVFVDGPGAGKHIQ- 198 (275)
Q Consensus 123 ~~~~~a~LLkyDS~hG~f~~~v~~~-e~~~l~inGk~I~V~~~~dP~~i~w~~~giD--iVie~TG~f~~~e~a~~Hl~- 198 (275)
+++++||||||||+||+|+++++++ +++.|++||+.|+++++++|+++||+++|+| +||||||.|++++++++||+
T Consensus 170 d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~ 249 (477)
T PRK08289 170 DLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKS 249 (477)
T ss_pred CHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhc
Confidence 9999999999999999999999986 3789999999999999999999999999999 99999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcchhhhHHHHHHhhhhcCceEEEEEee
Q 023894 199 AGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCMLIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 199 aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTTn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
+||||||||||+++ |+|+|||||||+.|++. ++||| |||||||||+|++|+||++|||+++.|||.
T Consensus 250 ~GakkViiSAP~k~-d~p~iV~GVN~~~~~~~-~~IIS-nASCTTN~LaPvlKvL~d~fGI~~g~mTTv 315 (477)
T PRK08289 250 KGVAKVLLTAPGKG-DIKNIVHGVNHSDITDE-DKIVS-AASCTTNAITPVLKAVNDKYGIVNGHVETV 315 (477)
T ss_pred cCCCEEEECCCCCC-CCCeEEcccCHHHhCCC-CCEEE-CCccHHHHHHHHHHHHHHhcCeeEEEEEEE
Confidence 79999999999987 78999999999999876 88999 999999999999999999999999999986
No 5
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=2.6e-58 Score=436.46 Aligned_cols=180 Identities=54% Similarity=0.923 Sum_probs=169.7
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
++||||||||||||+++|++++++++++++|+|||+.++++++|||||||+||+|++++++ +++.|++||++|++++++
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISA-DENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEE-cCCEEEECCEEEEEEEcC
Confidence 3699999999999999999887643569999999999999999999999999999999997 678999999999999999
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcchhh
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCMLIK 245 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTTn~ 245 (275)
||+++||+++|+|+||||||.|++++++++|+++|||||++|+|++++|+|+||||||++.|++..++||| ||||||||
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IIS-nasCTTn~ 158 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIIS-NASCTTNC 158 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEE-CCcHHHHH
Confidence 99999999999999999999999999999999999999999999988778999999999999853378999 99999999
Q ss_pred hHHHHHHhhhhcCceEEEEEee
Q 023894 246 MATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 246 LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
|+|++|+||++|||+++.||+.
T Consensus 159 Lap~lkvL~~~fgI~~~~mTTi 180 (337)
T PRK07403 159 LAPIAKVLHDNFGIIKGTMTTT 180 (337)
T ss_pred HHHHHHHHHHhcCeeEEEEEEE
Confidence 9999999999999999999985
No 6
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.1e-58 Score=433.52 Aligned_cols=177 Identities=37% Similarity=0.623 Sum_probs=167.4
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~ 163 (275)
|++||||||||||||+++|+++++ +++++|+|||+ .++++++|||||||+||+|+++|++ +++.|++||++|++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~--~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALER--EDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSV-TDGFLMIGSKKVHVFF 77 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhc--CCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEe-cCCEEEECCeEEEEEe
Confidence 347999999999999999999875 35999999995 7999999999999999999999997 5789999999999999
Q ss_pred cCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcch
Q 023894 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCML 243 (275)
Q Consensus 164 ~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTT 243 (275)
++||+++||++.|+|+||||||.|+++++++.|+++|||||++|+|.++ |+|+||||||++.|++. ++||| ||||||
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~-~vp~vV~gVN~~~~~~~-~~IIS-nasCTT 154 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKD-DTPIYVMGVNHTQYDKS-QRIVS-NASCTT 154 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCC-CCCeEEcccCHHHhCCC-CCEEE-CCccHH
Confidence 9999999999999999999999999999999999999999999999764 78999999999999876 78999 999999
Q ss_pred hhhHHHHHHhhhhcCceEEEEEee
Q 023894 244 IKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 244 n~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
|||+|++|+||++|||+++.|||.
T Consensus 155 n~Lap~lk~L~~~fgI~~~~~TT~ 178 (337)
T PTZ00023 155 NCLAPLAKVVNDKFGIVEGLMTTV 178 (337)
T ss_pred HHHHHHHHHHHHhcCeeEEEEEEE
Confidence 999999999999999999999985
No 7
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.1e-57 Score=431.37 Aligned_cols=176 Identities=39% Similarity=0.636 Sum_probs=166.7
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
++||||||||||||+++|+++++ +++++|+|||+.++++++|||||||+||+|+++|++ +++.|.+||+.|++++++
T Consensus 2 ~~~i~inGfGRIGr~~~r~~~~~--~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~-~~~~l~v~g~~I~v~~~~ 78 (331)
T PRK15425 2 TIKVGINGFGRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAER 78 (331)
T ss_pred ceEEEEEeeChHHHHHHHHHHHC--CCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEe-cCCEEEECCeEEEEEEcC
Confidence 47999999999999999998875 459999999999999999999999999999999997 578999999999999999
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcchhh
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCMLIK 245 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTTn~ 245 (275)
+|+++||+++|+|+||||||.|++++++++|+++|||||++|+|.++ |+|+||||||++.|++ ++||| ||||||||
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~-~vp~vV~gVN~~~~~~--~~IIS-naSCtTn~ 154 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD-NTPMFVKGANFDKYAG--QDIVS-NASCTTNC 154 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCC-CCCEEEcccCHHHcCC--CCEEE-CCCcHHHH
Confidence 99999999999999999999999999999999999999999999654 6899999999999964 68999 99999999
Q ss_pred hHHHHHHhhhhcCceEEEEEeec
Q 023894 246 MATLFHFISLLTNLASAAMLLAP 268 (275)
Q Consensus 246 LaPvlkvL~~~fgI~~v~vt~~~ 268 (275)
|+|++|+||++|||+++.|||.=
T Consensus 155 Lapvlk~L~~~fgI~~g~mTTvh 177 (331)
T PRK15425 155 LAPLAKVINDNFGIIEGLMTTVH 177 (331)
T ss_pred HHHHHHHHHHhCCeEEEEEEEEE
Confidence 99999999999999999999874
No 8
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-57 Score=426.67 Aligned_cols=177 Identities=44% Similarity=0.685 Sum_probs=168.9
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
++||||||||||||+++|++.+++. ++++|+|||+.+++++||||+|||+||+|+++++. +++.+.|||+.|+++.++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~-dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~-~~~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDG-DIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEV-KDDALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCC-CeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccc-cCCeEEECCceEEEEecC
Confidence 3799999999999999999998753 69999999999999999999999999999999985 678999999999999999
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHc-CCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcchh
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA-GAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCMLI 244 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~a-GakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTTn 244 (275)
+|+++||.++|+|+|+||||.|+++|++++|+++ |||||++|+|+++ |+++|||||||+.|++. ++||| |+|||||
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~-~~~~vv~gvn~~~~~~~-~~iVs-naSCTTN 155 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKD-DVATVVYGVNHNYYDAG-HTIVS-NASCTTN 155 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCC-CccEEEEeccccccCCC-CcEEE-Eccchhh
Confidence 9999999999999999999999999999999998 6999999999987 58999999999999986 89999 9999999
Q ss_pred hhHHHHHHhhhhcCceEEEEEee
Q 023894 245 KMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 245 ~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
||+|++|+||++|||+++.|||+
T Consensus 156 cLap~~kvl~d~fGI~~g~mTtV 178 (335)
T COG0057 156 CLAPVAKVLNDAFGIEKGLMTTV 178 (335)
T ss_pred hhHHHHHHHHHhcCeeEEEEEEE
Confidence 99999999999999999999986
No 9
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=9.3e-57 Score=426.58 Aligned_cols=178 Identities=43% Similarity=0.654 Sum_probs=166.7
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
|++||||||||||||+++|+++++ +++++|+|||+.++++++|||||||+||+|++++++ +++.|++||+.|+++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~--~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~-~~~~l~v~g~~I~v~~~ 77 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEA-FEDHLLVDGKKIRLLNN 77 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhc--CCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEc
Confidence 457999999999999999998875 359999999999999999999999999999999997 68899999999999999
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcchh
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCMLI 244 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTTn 244 (275)
+||+++||++.|+||||||||.|++++++++|+++|||||++|+|++++|+ ++|+|||++.|++..++||| |||||||
T Consensus 78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~-~lV~gVN~~~~~~~~~~IIS-naSCTTn 155 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDV-TIVVGVNEDQLDIEKHTIIS-NASCTTN 155 (343)
T ss_pred CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCC-cEEecccHHHhccCCCCEEE-CCchHHH
Confidence 999999999999999999999999999999999999999999999887555 56899999999872278999 9999999
Q ss_pred hhHHHHHHhhhhcCceEEEEEee
Q 023894 245 KMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 245 ~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
||+|++|+||++|||+++.||+.
T Consensus 156 ~Lap~lk~L~~~fgI~~~~mTTi 178 (343)
T PRK07729 156 CLAPVVKVLDEQFGIENGLMTTV 178 (343)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEE
Confidence 99999999999999999999985
No 10
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-56 Score=426.02 Aligned_cols=176 Identities=23% Similarity=0.409 Sum_probs=166.0
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhccccccccccC-ceEEEecCCeEEECC-eEEEE
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFK-ADVKIVDNETISVDG-KLIKV 161 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a~LLkyDS~hG~f~-~~v~~~e~~~l~inG-k~I~V 161 (275)
|++||||||||||||+++|+++++ +++++|+|||+ .++++++|||||||+||+|+ .++++ +++.|++|| ++|++
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~--~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~-~~~~l~i~g~~~i~~ 77 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTD--PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV-VGEQIVLNGTQKIRV 77 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhc--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEE-cCCEEecCCCeEEEE
Confidence 347999999999999999998875 45999999995 79999999999999999996 68987 678999999 89999
Q ss_pred EecCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCc
Q 023894 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSC 241 (275)
Q Consensus 162 ~~~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASC 241 (275)
+++++|+++||+++|+|+||||||.|++.+.+..|+++|||||||++|++ |+|+|||||||+.|++. ++||| ||||
T Consensus 78 ~~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~--d~p~vV~gVN~~~~~~~-~~IIS-naSC 153 (342)
T PTZ00353 78 SAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSA--DAPTVMAGSNDERLSAS-LPVCC-AGAP 153 (342)
T ss_pred EecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCC--CCCeEEecCChHHcCCC-CCEEE-CCCH
Confidence 99999999999999999999999999999999999999999999999985 57999999999999986 78999 9999
Q ss_pred chhhhHHHHHHhhhhcCceEEEEEee
Q 023894 242 MLIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 242 TTn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
|||||+|++|+||++|||+++.|||.
T Consensus 154 TTn~LapvlkvL~~~fGI~~g~mTTv 179 (342)
T PTZ00353 154 IAVALAPVIRALHEVYGVEECSYTAI 179 (342)
T ss_pred HHHHHHHHHHHHHHhcCeeEEEeeee
Confidence 99999999999999999999999998
No 11
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=2.7e-56 Score=421.41 Aligned_cols=176 Identities=45% Similarity=0.700 Sum_probs=166.6
Q ss_pred eEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCC-eEEECCe-EEEEEecC
Q 023894 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNE-TISVDGK-LIKVVSNR 165 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~-~l~inGk-~I~V~~~~ 165 (275)
||||||||||||+++|+++++++..+++|+|||+.++++++|||||||+||+|+++|++ +++ .|.+||+ .|++++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTA-DEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEe-cCCceEEECCeEEEEEEecC
Confidence 69999999999999999988643469999999999999999999999999999999997 466 7999999 99999999
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcchhh
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCMLIK 245 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTTn~ 245 (275)
+|+++||+++|+||||||||.|+++++++.|+++|||||++|+|++++ +||||||||++.|++. ++||| ||||||||
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~-~plvV~gVN~~~~~~~-~~IIS-n~sCtTn~ 156 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGD-APTIVYGVNHDEYDPE-ERIIS-NASCTTNC 156 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCC-CCeecCCCCHHHhCCC-CCEEe-cCCchHHH
Confidence 999999999999999999999999999999999999999999998874 8999999999999876 78999 99999999
Q ss_pred hHHHHHHhhhhcCceEEEEEee
Q 023894 246 MATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 246 LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
|+|++|+||++|||+++.|||.
T Consensus 157 Lap~lk~L~~~fgI~~~~~TTi 178 (327)
T TIGR01534 157 LAPLAKVLDEAFGIVSGLMTTV 178 (327)
T ss_pred HHHHHHHHHHhcCeeEEEEEEE
Confidence 9999999999999999999985
No 12
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=3.8e-55 Score=424.19 Aligned_cols=175 Identities=42% Similarity=0.700 Sum_probs=165.7
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
+||||||||||||+++|++.++ .++++|+|||+ .++++++|||||||+||+|+++|++.+++.|.+||+.|+|++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~--~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSR--DDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhc--CCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 7999999999999999998864 35999999996 89999999999999999999999864678999999999999999
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcchhh
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCMLIK 245 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTTn~ 245 (275)
+|+++||+++|+||||||||.|++++++++|+++|||||||++|.+ |+|+||||||++.|++. ++||| ||||||||
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~--dvPlvV~gVN~~~l~~~-~~IIS-naSCTTn~ 239 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSA--DAPMFVVGVNEKTYKPN-MNIVS-NASCTTNC 239 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCC--CCCeEEeccCHHHhCCC-CCeee-CCCcHHHH
Confidence 9999999999999999999999999999999999999999999964 68999999999999876 78999 99999999
Q ss_pred hHHHHHHhhhhcCceEEEEEee
Q 023894 246 MATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 246 LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
|+|++|+||++|||+++.|||.
T Consensus 240 Lap~lk~L~~~fGI~~g~mTTv 261 (421)
T PLN02272 240 LAPLAKVVHEEFGILEGLMTTV 261 (421)
T ss_pred HHHHHHHHHHhCCeEEEEEEEE
Confidence 9999999999999999999986
No 13
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-54 Score=410.93 Aligned_cols=177 Identities=36% Similarity=0.592 Sum_probs=167.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCC-CCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~-~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
+||||||||||||.++|+|+++.+ +++++|+|||+.++++++|||||||+||+|+++++. +++.|.+||++|++++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQ-ERDQLFVGDDAIRLLHER 80 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEe-cCCEEEECCEEEEEEEcC
Confidence 689999999999999999998753 469999999999999999999999999999999986 689999999999999999
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCC-CCCCCeEEeecCcccCCCCCCeeeeeCCCcchh
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDHEVANIVRSVYSCMLI 244 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k-~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTTn 244 (275)
+|+++||+++|+|+||||||.|++++++++|+++|||||++|+|.+ +++ ++||||||++.|++. ++||| |||||||
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~-~~vV~gVN~~~~~~~-~~IIS-nasCTTn 157 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLD-ATVVYGVNHDQLRAE-HRIVS-NASCTTN 157 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCC-CeEEeCcCHHHhCcC-CCEEE-CCchHHH
Confidence 9999999999999999999999999999999999999999999975 534 599999999999876 88999 9999999
Q ss_pred hhHHHHHHhhhhcCceEEEEEee
Q 023894 245 KMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 245 ~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
||+|++|+||++|||+++.|||.
T Consensus 158 ~Lap~lk~L~~~fgI~~~~mTT~ 180 (336)
T PRK13535 158 CIIPVIKLLDDAFGIESGTVTTI 180 (336)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEE
Confidence 99999999999999999999985
No 14
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=9.7e-54 Score=404.98 Aligned_cols=176 Identities=32% Similarity=0.548 Sum_probs=166.0
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
++||||||||||||.++|++.++ ++++++++||+ .++++++|||||||+||+|+++++. +++.|.+||++|+++++
T Consensus 2 ~ikigInG~GRiGr~v~r~~~~~--~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~-~g~~l~~~g~~i~v~~~ 78 (334)
T PRK08955 2 TIKVGINGFGRIGRLALRAAWDW--PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTA-EGDAIVINGKRIRTTQN 78 (334)
T ss_pred CeEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEE-cCCEEEECCEEEEEEec
Confidence 47999999999999999998875 35999999995 7999999999999999999999986 68899999999999999
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcchh
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCMLI 244 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTTn 244 (275)
++|++++|+ |+|+||||||.|++++++++|+++|||||++|+|++++|+|+||||||++.|++..++||| |||||||
T Consensus 79 ~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IIS-nasCtTn 155 (334)
T PRK08955 79 KAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVT-AASCTTN 155 (334)
T ss_pred CChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEE-CCccHHH
Confidence 999999998 9999999999999999999999999999999999988778999999999999872268999 9999999
Q ss_pred hhHHHHHHhhhhcCceEEEEEee
Q 023894 245 KMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 245 ~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
||+|++|+||++|||+++.|||.
T Consensus 156 ~Lap~lk~L~~~fgI~~~~mTTv 178 (334)
T PRK08955 156 CLAPVVKVIHEKLGIKHGSMTTI 178 (334)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEE
Confidence 99999999999999999999985
No 15
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=1.1e-53 Score=405.08 Aligned_cols=177 Identities=39% Similarity=0.652 Sum_probs=166.8
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhccccccccccCc-eEEEecCCeEEECCeEEEEE
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVV 162 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a~LLkyDS~hG~f~~-~v~~~e~~~l~inGk~I~V~ 162 (275)
+++||||||||||||..+|.+.++ +++++|+|||+ .++++++|||||||+||+|++ +++.++++.|.+||++|+++
T Consensus 4 ~~lrVaI~G~GrIGr~~~r~~~~~--~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~ 81 (338)
T PLN02358 4 KKIRIGINGFGRIGRLVARVVLQR--DDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 81 (338)
T ss_pred CceEEEEEeecHHHHHHHHHHhhC--CCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEE
Confidence 358999999999999999998764 46999999996 799999999999999999996 99976678899999999999
Q ss_pred ecCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcc
Q 023894 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCM 242 (275)
Q Consensus 163 ~~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCT 242 (275)
+++||+++||.+.|+||||||||.|++++++++|+++|||||+||+|++ |+|+||||||++.|++. ++||| |||||
T Consensus 82 ~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~--dvp~iV~gVN~~~~~~~-~~IIS-nasCT 157 (338)
T PLN02358 82 GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEHEYKSD-LDIVS-NASCT 157 (338)
T ss_pred EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCC--CCCeEecCcCHHHhCCC-CCEEE-CCCch
Confidence 9999999999999999999999999999999999999999999999975 57999999999999876 78999 99999
Q ss_pred hhhhHHHHHHhhhhcCceEEEEEee
Q 023894 243 LIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 243 Tn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
||||+|++|+||++|||+++.|||.
T Consensus 158 Tn~Lap~lk~L~~~fgI~~~~mTTi 182 (338)
T PLN02358 158 TNCLAPLAKVINDRFGIVEGLMTTV 182 (338)
T ss_pred HHHHHHHHHHHHHhcCeeEEEEEEE
Confidence 9999999999999999999999985
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=9.7e-52 Score=390.01 Aligned_cols=176 Identities=36% Similarity=0.641 Sum_probs=165.7
Q ss_pred eEEEECCChhHHHHHHHHHhCC-CCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 88 KVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~-~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
||||||||||||.++|+|++++ .+++++++|||..+.++++|||||||+||+|+++++. +++.|.+||+.|+++++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~-~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKV-DGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEE-eCCEEEECCeEEEEEEcCC
Confidence 6999999999999999999874 3569999999999999999999999999999999987 6889999999999999999
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCC-CCCCCeEEeecCcccCCCCCCeeeeeCCCcchhh
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK-GADIPTYVVGVNEKDYDHEVANIVRSVYSCMLIK 245 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k-~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTTn~ 245 (275)
|+++||+++|+|+||||||.|.+++++++|+++||++|++|+|.+ +.+ ++||||||++.|++. ++||| ||||||||
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~-~~vV~gVN~~~~~~~-~~IIS-nasCtTn~ 156 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLD-ATIVYGVNQQDLSAE-HTIVS-NASCTTNC 156 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCC-ceEEeccCHHHhCCC-CCEEe-CCCcHHHH
Confidence 999999999999999999999999999999999999999999965 434 489999999999876 88999 99999999
Q ss_pred hHHHHHHhhhhcCceEEEEEee
Q 023894 246 MATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 246 LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
|+|++|+||++|||+++.|||.
T Consensus 157 lap~lk~L~~~fgI~~~~~tTv 178 (325)
T TIGR01532 157 IVPLIKLLDDAIGIESGTITTI 178 (325)
T ss_pred HHHHHHHHHHhcCeeEEEEEEE
Confidence 9999999999999999999985
No 17
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=8.5e-51 Score=347.01 Aligned_cols=150 Identities=50% Similarity=0.835 Sum_probs=138.7
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCC-ChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~-~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
+||||||||||||+++|++..+ +++++|+|||+. ++++++|||||||+||+|++++++ +++.|.+||+.|++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~--~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~-~~~~l~v~G~~I~~~~~~ 77 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQ--PDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEV-DDDGLIVNGKKIKVTEER 77 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTS--TTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEE-ETTEEEETTEEEEEEHTS
T ss_pred CEEEEECCCcccHHHHHhhccc--ceEEEEEEecccccchhhhhhhhccccccceeccccc-ccceeEeecccccchhhh
Confidence 5899999999999999999964 469999999997 999999999999999999999997 578899999999999999
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCc
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSC 241 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASC 241 (275)
+|+++||+++|+|+|+||||.|++++.++.|+++||||||+|+|+++..+||||||||++.|+++ ++||| ||||
T Consensus 78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~-~~iIS-~aSC 151 (151)
T PF00044_consen 78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPE-HHIIS-NASC 151 (151)
T ss_dssp SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTT-TSEEE-E--H
T ss_pred hhcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCC-CCEEE-ccCC
Confidence 99999999999999999999999999999999999999999999987548999999999999987 69999 9999
No 18
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=7e-46 Score=315.44 Aligned_cols=149 Identities=52% Similarity=0.848 Sum_probs=140.0
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
+||+|||||||||.++|.+.++ +.+++++|+|+.++++++|||+|||+||+|.++++. +++.|.+||+.|+++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~--~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~-~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER--PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEV-DEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEE-eCCEEEECCEEEEEEecCC
Confidence 4899999999999999998764 469999999988999999999999999999999986 6788999999999999999
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCc
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSC 241 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASC 241 (275)
|+++||+++|+|+||||||.|.+++.++.|+++||||||||||+++ +.++||||||+++|+++ ++||| ||||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~-~~~t~V~GvN~~~~~~~-~~iiS-~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKD-ADKTFVYGVNHDEYDPE-DHIVS-NASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCC-CCceEEEeechHHcCCC-CCEEE-cCCC
Confidence 9999999999999999999999999999999999999999999986 45699999999999986 67999 9999
No 19
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-41 Score=312.61 Aligned_cols=161 Identities=40% Similarity=0.637 Sum_probs=150.3
Q ss_pred hHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCCCCCCcccc
Q 023894 97 IGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAEL 175 (275)
Q Consensus 97 IGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~dP~~i~w~~~ 175 (275)
|||+++ + +. .+++|++||+ .++++++||++|||+||+|++++++ ++.++++||+.|+++++++|..|+|.+.
T Consensus 1 ig~~~~---~-~~--~v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k~-~~~~~i~~G~~i~~~~~~~p~~i~w~~~ 73 (285)
T KOG0657|consen 1 IGRLVL---Q-RN--SVDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVKA-ENFKLIINGNPITIFQFRDPAKIPWGAK 73 (285)
T ss_pred CCcccc---c-cC--CcccccccCcccccccccccccccccCCccccceee-cCCceeecCceEEeecccCcccCccccc
Confidence 577777 2 33 3899999998 8999999999999999999999997 6888999999999999999999999999
Q ss_pred cccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcchhhhHHHHHHhhh
Q 023894 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCMLIKMATLFHFISL 255 (275)
Q Consensus 176 giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTTn~LaPvlkvL~~ 255 (275)
|+|+|+|+||.|.+.+++..|+++|||||+||||+. |.||+|+|||+++|+++ ..||| |+|||||||+|+.|+|||
T Consensus 74 g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~--dapmfv~gVn~~~y~~~-~~iiS-nascttnclaPlaKVi~d 149 (285)
T KOG0657|consen 74 GADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSA--DAPMFVMGVNGEKYDNS-LDIIS-NASCTTNCLAPLAKVIHD 149 (285)
T ss_pred cceeEeeccccccccccccccccccceEEEeccccC--CCCcccccccccccccc-cceee-chhhhhccccchhheecc
Confidence 999999999999999999999999999999999996 58999999999999987 55999 999999999999999999
Q ss_pred hcCceEEEEEeec
Q 023894 256 LTNLASAAMLLAP 268 (275)
Q Consensus 256 ~fgI~~v~vt~~~ 268 (275)
+|||.++.||++-
T Consensus 150 ~fgI~EgLMtTvh 162 (285)
T KOG0657|consen 150 NFGIMEGLMTTVH 162 (285)
T ss_pred cccccccccccee
Confidence 9999999999863
No 20
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=8.5e-36 Score=282.60 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=138.1
Q ss_pred EEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChh---hhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK---NASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 89 VaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~---~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
|||||||||||.++|++.++ +++++|+||| .+++ +++|+++|||.|+.+...++. +++.+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~--~d~elVaVnD-~~~~~~a~lA~~lgyds~~~~~~~~~~~-~~~~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ--DDMKLVGVTK-TSPDFEAYRAKELGIPVYAASEEFIPRF-EEAGIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC--CCcEEEEEec-CChHHHHHHHHHhCCCEEeecCCcceEe-ccCceEecCC--------
Confidence 69999999999999998764 4699999999 4777 788888899999554446665 4566777764
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcchhh
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCMLIK 245 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTTn~ 245 (275)
|+++. .++|+|+||||.+...+.+..|++.|+|+|++++|.++...++||+|+|++.|.+. + ||| |+||||||
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~-~-~vs-~aSCtTn~ 141 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGK-D-YVR-VVSCNTTG 141 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcC-c-eEE-ecCchHhh
Confidence 44443 37999999999999999999999999999999999875324799999999999865 4 999 99999999
Q ss_pred hHHHHHHhhhhcCceEEEEEeec
Q 023894 246 MATLFHFISLLTNLASAAMLLAP 268 (275)
Q Consensus 246 LaPvlkvL~~~fgI~~v~vt~~~ 268 (275)
|+|++|+||+.|||+++.|||+=
T Consensus 142 Lap~~~~L~~~fGI~~~~~Ttvh 164 (333)
T TIGR01546 142 LVRTLNAINDYSKVDKVRAVMVR 164 (333)
T ss_pred HHHHHHHHHHhcCeEEEEEEEEe
Confidence 99999999999999999999874
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=2.8e-30 Score=244.77 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=129.5
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhcc---ccccccccCceEEEecCCeEEECCeEEEEE
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK---YDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLk---yDS~hG~f~~~v~~~e~~~l~inGk~I~V~ 162 (275)
++||||||||||||.++|++.++ +.+++++|+|. ++++.+||++ || .||+++..++..++..+.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~--~d~eLvav~d~-~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~------ 70 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ--PDMELVGVAKT-KPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAG------ 70 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC--CCcEEEEEECC-ChHHHHHHHHhcCCC-ccccCccccccccCCceEEcC------
Confidence 37999999999999999998764 46999999996 5789999987 44 566665554311223333333
Q ss_pred ecCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCC--eEEeecCcccCCCCCCeeeeeCCC
Q 023894 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIP--TYVVGVNEKDYDHEVANIVRSVYS 240 (275)
Q Consensus 163 ~~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP--~iV~GVN~~~~~~~~~~IIS~nAS 240 (275)
+++++. .++|+||||||.+...+.+..|+++| ++||+++|.+. ++| +||+|||++.+... + +|+ |+|
T Consensus 71 ---~~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~-~~~~~~~v~~vN~~~~~~~-~-~v~-~~s 139 (341)
T PRK04207 71 ---TIEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKA-EVAGVSFNALANYEEALGK-D-YVR-VVS 139 (341)
T ss_pred ---ChhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCC-CCCCCcEEeeECHHHhCCC-C-cEE-ccC
Confidence 233332 27999999999999999999999999 77999998754 333 47999999999764 3 899 999
Q ss_pred cchhhhHHHHHHhhhhcCceEEEEEee
Q 023894 241 CMLIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 241 CTTn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
||||||+|+||+||++|||+++.|||.
T Consensus 140 CtT~~l~~~l~~L~~~fgI~~~~vTtv 166 (341)
T PRK04207 140 CNTTGLCRTLCALDRAFGVKKVRATLV 166 (341)
T ss_pred hHHHHHHHHHHHHHHhcCceEEEEEEE
Confidence 999999999999999999999999985
No 22
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.90 E-value=1.2e-23 Score=198.79 Aligned_cols=149 Identities=17% Similarity=0.247 Sum_probs=124.0
Q ss_pred eeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 86 ~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
.++||| | +|.+||.++++|.+|++ + +.+. +||. |.. .+ .++++.++|+.+.|.
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~f---p---v~~l-------~l~~--s~~------~s--~gk~i~f~g~~~~V~-- 56 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDL---E---IEQI-------SIVE--IEP------FG--EEQGIRFNNKAVEQI-- 56 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCC---c---hhhe-------eecc--ccc------cc--CCCEEEECCEEEEEE--
Confidence 368999 9 99999999999999874 4 3444 4442 210 11 468899999999996
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeecCcccCCC-CCCeeeeeCCC
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH-EVANIVRSVYS 240 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~DiP~iV~GVN~~~~~~-~~~~IIS~nAS 240 (275)
+.++.+|. |+|++|+ +|...++++++...++|| +||+.. ++++|+|++||+||++.+.. ...+||+ ||+
T Consensus 57 -~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIa-nPN 129 (322)
T PRK06901 57 -APEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVS-LPD 129 (322)
T ss_pred -ECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEE-CCc
Confidence 35556775 8999999 999999999999999999 899655 58899999999999998875 2157999 999
Q ss_pred cchhhhHHHHHHhhhhcCceEEEEEee
Q 023894 241 CMLIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 241 CTTn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
|||.+|+..||+||+.|||+|++||+-
T Consensus 130 CsTi~l~~aL~pL~~~~~l~rv~VsTy 156 (322)
T PRK06901 130 PQVSQLALALAPFLQEQPLSQIFVTSL 156 (322)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 999999999999999999999999973
No 23
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.86 E-value=1.3e-21 Score=184.67 Aligned_cols=149 Identities=24% Similarity=0.314 Sum_probs=119.4
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
+||+|.| +|.+|+.++|+|.++..+.++++++... + + .++.+.++|..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~-------------~---------~--~g~~l~~~g~~i~v~--- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA-------------R---------S--AGKELSFKGKELKVE--- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc-------------c---------c--CCCeeeeCCceeEEe---
Confidence 5899999 9999999999998865555666555322 0 0 234455667666664
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEe---CCCCCCCCCeEEeecCcccCCCC-CCeeeeeCCCc
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT---APAKGADIPTYVVGVNEKDYDHE-VANIVRSVYSC 241 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIIS---AP~k~~DiP~iV~GVN~~~~~~~-~~~IIS~nASC 241 (275)
+++..+|. ++|+||+|+|.+.+++.+++|+++|+ +||+ +++.++|+|++|+|||++.|+.. +++||| ||+|
T Consensus 55 d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVa-np~C 129 (334)
T PRK14874 55 DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIA-NPNC 129 (334)
T ss_pred eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEE-CccH
Confidence 45555784 89999999999999999999999999 7884 33455578999999999999753 147999 9999
Q ss_pred chhhhHHHHHHhhhhcCceEEEEEee
Q 023894 242 MLIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 242 TTn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
+|+|++|.|++|+++|+|+++.|++.
T Consensus 130 ~~t~~~l~l~pL~~~~~i~~i~vtt~ 155 (334)
T PRK14874 130 STIQMVVALKPLHDAAGIKRVVVSTY 155 (334)
T ss_pred HHHHHHHHHHHHHHhcCceEEEEEEE
Confidence 99999999999999999999998875
No 24
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=99.84 E-value=9.8e-21 Score=181.89 Aligned_cols=151 Identities=14% Similarity=0.082 Sum_probs=119.0
Q ss_pred eeEEEEC-CChhHHHHHHHHH-hCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 87 LKVAING-FGRIGRNFLRCWH-GRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~-er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
+||||+| +|.+|+.++++|. ++.++..++ ++|. | .-+ .+..+.++|+.+.|..
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~-------------~~~s--s-------~~s--~g~~~~f~~~~~~v~~- 55 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRP-------------VFFS--T-------SQL--GQAAPSFGGTTGTLQD- 55 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccE-------------EEEE--c-------hhh--CCCcCCCCCCcceEEc-
Confidence 3799999 9999999999888 655422222 2221 2 111 4567778888876653
Q ss_pred CCCCCC-CcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeecCcccCCCC-CCee--eee
Q 023894 165 RDPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VANI--VRS 237 (275)
Q Consensus 165 ~dP~~i-~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~DiP~iV~GVN~~~~~~~-~~~I--IS~ 237 (275)
.+++ .|. ++|+||+|.|...+++++++..++|+..+||+.. ++++|+|++|++||++.+... ..+| |+
T Consensus 56 --~~~~~~~~--~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ia- 130 (366)
T TIGR01745 56 --AFDIDALK--ALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFV- 130 (366)
T ss_pred --Cccccccc--CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEE-
Confidence 3333 454 8999999999999999999999999544899665 588899999999999988642 2567 89
Q ss_pred CCCcchhhhHHHHHHhhhhcCceEEEEEee
Q 023894 238 VYSCMLIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 238 nASCTTn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
||+|||.+|+..|++||+.|+|+++.|||-
T Consensus 131 nPNCst~~l~~aL~pL~~~~~i~~v~VsTy 160 (366)
T TIGR01745 131 GGNCTVSLMLMSLGGLFANDLVEWVSVATY 160 (366)
T ss_pred CcCHHHHHHHHHHHHHHhccCccEEEEEec
Confidence 999999999999999999999999999973
No 25
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.83 E-value=1.5e-20 Score=178.46 Aligned_cols=151 Identities=23% Similarity=0.288 Sum_probs=120.7
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCe-EEECCeEEEEEec
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNET-ISVDGKLIKVVSN 164 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~-l~inGk~I~V~~~ 164 (275)
+||||.| +|.+|+.+++.|.++.+ .++.+ ++|. | +-+ .|++ +.+.|+.+.+..
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f-~~~~~------------~~~A--S-------~rS--aG~~~~~f~~~~~~v~~- 56 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHF-PFEEL------------VLLA--S-------ARS--AGKKYIEFGGKSIGVPE- 56 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCC-CcceE------------EEEe--c-------ccc--cCCccccccCccccCcc-
Confidence 6899999 99999999999998753 22211 2222 2 222 2444 788888776642
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeecCcccCCCC-CCe-eeeeCC
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VAN-IVRSVY 239 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~DiP~iV~GVN~~~~~~~-~~~-IIS~nA 239 (275)
.-.+...|. ++||||.|.|...+++.+++..++|+ +||++. ++++|+|+||++||.+.+... +.+ ||+ ||
T Consensus 57 ~~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iia-np 131 (334)
T COG0136 57 DAADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIA-NP 131 (334)
T ss_pred ccccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEE-CC
Confidence 125667787 89999999999999999999999998 999655 488899999999999887653 134 999 99
Q ss_pred CcchhhhHHHHHHhhhhcCceEEEEEee
Q 023894 240 SCMLIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 240 SCTTn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
+|||.+|++.||+|+++++|+++.|+|-
T Consensus 132 NCst~~l~~aL~PL~~~~~i~~v~VsTy 159 (334)
T COG0136 132 NCSTIQLVLALKPLHDAFGIKRVVVSTY 159 (334)
T ss_pred ChHHHHHHHHHHHHHhhcCceEEEEEEe
Confidence 9999999999999999999999999973
No 26
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=99.83 E-value=1.8e-20 Score=177.76 Aligned_cols=148 Identities=22% Similarity=0.300 Sum_probs=114.7
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
||+|+| .|.+|+.++|+|.++..+.++++.+... + + .+..+.+.|+.+.+... +
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~-------------~---------~--~g~~~~~~~~~~~~~~~-~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD-------------R---------S--AGRKVTFKGKELEVNEA-K 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc-------------c---------c--CCCeeeeCCeeEEEEeC-C
Confidence 699999 9999999999998765444454333111 1 1 34455566655555432 2
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeecCcccCCCC-CCeeeeeCCCcc
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VANIVRSVYSCM 242 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~DiP~iV~GVN~~~~~~~-~~~IIS~nASCT 242 (275)
+ ..| .++|+||+|+|.+.+++.+++|+++|+ +||+.+ ++++|+|++|+|||++.++.. .++||| ||+||
T Consensus 56 ~--~~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iia-np~C~ 128 (339)
T TIGR01296 56 I--ESF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIA-NPNCS 128 (339)
T ss_pred h--HHh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEE-CCCcH
Confidence 2 235 389999999999999999999999999 688554 465578999999999999753 156999 99999
Q ss_pred hhhhHHHHHHhhhhcCceEEEEEee
Q 023894 243 LIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 243 Tn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
|+|+++.|++|+++|+|+++.|++.
T Consensus 129 ~t~~~l~l~pL~~~~~i~~i~vtt~ 153 (339)
T TIGR01296 129 TIQMVVVLKPLHDEAKIKRVVVSTY 153 (339)
T ss_pred HHHHHHHHHHHHHhcCccEEEEEee
Confidence 9999999999999999999999874
No 27
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.75 E-value=2e-17 Score=157.55 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=120.3
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~ 163 (275)
+++||||+| +|-+|+.++|+|.++..+.++++.+... + + .|+.+.++|+.+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~-------------~---------s--aG~~~~~~~~~~~v~- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE-------------E---------S--AGETLRFGGKSVTVQ- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc-------------C---------c--CCceEEECCcceEEE-
Confidence 458999999 9999999999999876555665444211 1 1 456677778766664
Q ss_pred cCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeecCcccCCC-CCCeeeeeCC
Q 023894 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH-EVANIVRSVY 239 (275)
Q Consensus 164 ~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~DiP~iV~GVN~~~~~~-~~~~IIS~nA 239 (275)
++++++|. ++|+||.|++...+++.++...++|+ +||+.. ++++|+|.++|+||.+.++. ...+||+ ||
T Consensus 58 --~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIA-nP 130 (336)
T PRK08040 58 --DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIA-VA 130 (336)
T ss_pred --eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEE-CC
Confidence 56778886 79999999999999999999999999 678654 45558999999999944432 1157999 99
Q ss_pred CcchhhhHHHHHHhhhhcCceEEEEEe
Q 023894 240 SCMLIKMATLFHFISLLTNLASAAMLL 266 (275)
Q Consensus 240 SCTTn~LaPvlkvL~~~fgI~~v~vt~ 266 (275)
+|+|.+++..|++|+++++|+++.|++
T Consensus 131 gC~~t~~~laL~PL~~~~~i~~viV~t 157 (336)
T PRK08040 131 DSLTSQLLTAIKPLIDQAGLSRLHVTN 157 (336)
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 999999999999999999999988875
No 28
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=99.74 E-value=2.1e-17 Score=158.01 Aligned_cols=151 Identities=21% Similarity=0.322 Sum_probs=118.9
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~ 163 (275)
..+||||+| +|.+|+.++|+|.+.. .+++ .++ +++ .|. -+ .++.+.+.|+.+.+..
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~--~f~v---~~l-------~~~--aS~-------~s--aGk~~~~~~~~l~v~~ 60 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKET--KFNI---AEV-------TLL--SSK-------RS--AGKTVQFKGREIIIQE 60 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCC--CCCc---ccE-------EEE--ECc-------cc--CCCCeeeCCcceEEEe
Confidence 347999999 9999999999998532 2452 111 122 121 11 4677788888777754
Q ss_pred cCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeecCcccCCCCCCeeeeeCCC
Q 023894 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHEVANIVRSVYS 240 (275)
Q Consensus 164 ~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~DiP~iV~GVN~~~~~~~~~~IIS~nAS 240 (275)
. +++. |. ++|+||.|+|...+++.+++..++|+ +||+.. ++++|+|++|++||.+.+... .+||+ ||+
T Consensus 61 ~-~~~~--~~--~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~-~~iIa-nPn 131 (347)
T PRK06728 61 A-KINS--FE--GVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEH-KGIIA-VPN 131 (347)
T ss_pred C-CHHH--hc--CCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhcc-CCEEE-CCC
Confidence 3 4543 53 79999999999999999999999998 788654 477789999999999998764 47999 999
Q ss_pred cchhhhHHHHHHhhhhcCceEEEEEee
Q 023894 241 CMLIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 241 CTTn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
|+|.+++..|++|+++++|++++|++-
T Consensus 132 C~tt~~~laL~PL~~~~~i~~v~V~t~ 158 (347)
T PRK06728 132 CSALQMVTALQPIRKVFGLERIIVSTY 158 (347)
T ss_pred CHHHHHHHHHHHHHHcCCccEEEEEEe
Confidence 999999999999999999999998863
No 29
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.73 E-value=1.5e-17 Score=160.21 Aligned_cols=152 Identities=16% Similarity=0.071 Sum_probs=115.4
Q ss_pred eeEEEEC-CChhHHHHHH-HHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 87 LKVAING-FGRIGRNFLR-CWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR-~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
++|||+| +|.+|+.++| +|.++.++..+++. +.|.+ + .+..+.++|+...++..
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~---------------~ss~~-------s--g~~~~~f~g~~~~v~~~ 57 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVF---------------FSTSQ-------A--GGAAPSFGGKEGTLQDA 57 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEE---------------ecchh-------h--CCcccccCCCcceEEec
Confidence 6899999 9999999998 66555432111222 11211 1 23345678877777654
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeecCcccCCCC-CC--eeeeeC
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHE-VA--NIVRSV 238 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~DiP~iV~GVN~~~~~~~-~~--~IIS~n 238 (275)
.+++. |. ++|+||.|+|...+++.+++..++|++.+||+.. ++++|+|++|++||.+.+... .. ++|+ |
T Consensus 58 ~~~~~--~~--~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIa-n 132 (369)
T PRK06598 58 FDIDA--LK--KLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFV-G 132 (369)
T ss_pred CChhH--hc--CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEE-c
Confidence 44443 43 7999999999999999999999999655889655 477799999999999887642 12 4899 9
Q ss_pred CCcchhhhHHHHHHhhhhcCceEEEEEee
Q 023894 239 YSCMLIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 239 ASCTTn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
|+|+|.+++..|++|++.++|++++|++-
T Consensus 133 PnC~tt~~~laL~PL~~~~~i~~viVst~ 161 (369)
T PRK06598 133 GNCTVSLMLMALGGLFKNDLVEWVSVMTY 161 (369)
T ss_pred CChHHHHHHHHHHHHHhcCCceEEEEEee
Confidence 99999999999999999999999998863
No 30
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.67 E-value=3.9e-16 Score=148.84 Aligned_cols=151 Identities=16% Similarity=0.222 Sum_probs=115.5
Q ss_pred cceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEE
Q 023894 84 VAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (275)
Q Consensus 84 ~~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~ 162 (275)
..++||+|.| +|.+|+.++|+|.+++.+.++++.+-.. + + .++.+.++|+.+.+.
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~-------------r---------s--aGk~~~~~~~~~~v~ 60 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA-------------R---------S--AGKKVTFEGRDYTVE 60 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc-------------C---------C--CCCeeeecCceeEEE
Confidence 3568999999 9999999999998866555555433111 0 1 244455566555543
Q ss_pred ecCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeecCcccCCCCC-----Cee
Q 023894 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDHEV-----ANI 234 (275)
Q Consensus 163 ~~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~DiP~iV~GVN~~~~~~~~-----~~I 234 (275)
. -+++ .|. ++|+||.|+|...+++++++..++|+ +||+.. ++++++|.+|+++|.+.++..+ .+|
T Consensus 61 ~-~~~~--~~~--~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~i 133 (344)
T PLN02383 61 E-LTED--SFD--GVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGAL 133 (344)
T ss_pred e-CCHH--HHc--CCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcE
Confidence 2 2333 343 79999999999999999999888998 677554 4666899999999998886531 349
Q ss_pred eeeCCCcchhhhHHHHHHhhhhcCceEEEEEe
Q 023894 235 VRSVYSCMLIKMATLFHFISLLTNLASAAMLL 266 (275)
Q Consensus 235 IS~nASCTTn~LaPvlkvL~~~fgI~~v~vt~ 266 (275)
|+ ||+|+|.+++..|++|+++++|++++|++
T Consensus 134 Ia-nPgC~~t~~~laL~PL~~~~~i~~vvv~t 164 (344)
T PLN02383 134 IA-NPNCSTIICLMAVTPLHRHAKVKRMVVST 164 (344)
T ss_pred EE-CCCcHHHHHHHHHHHHHHcCCeeEEEEEe
Confidence 99 99999999999999999999999998876
No 31
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.67 E-value=5.6e-16 Score=147.46 Aligned_cols=149 Identities=17% Similarity=0.237 Sum_probs=115.4
Q ss_pred eeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 86 ~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
++||+|.| +|.+|+.++|+|.++..+.++++.+... + + .++.+.++|+.+.+.
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-------------~---------~--aG~~l~~~~~~l~~~-- 57 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-------------E---------S--AGHSVPFAGKNLRVR-- 57 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-------------c---------c--CCCeeccCCcceEEe--
Confidence 37999999 9999999999999776555665555322 0 1 244455666555553
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeecCcccCCC-CCCeeeeeCCC
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH-EVANIVRSVYS 240 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~DiP~iV~GVN~~~~~~-~~~~IIS~nAS 240 (275)
+++..+|. ++|+||.+++...+.++++..+++|+ +||+.. +.+ |+|.+|++||.+.++. .+.+||+ ||+
T Consensus 58 -~~~~~~~~--~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~-~~pl~lPEvn~~~i~~~~~~~iIA-nPg 130 (336)
T PRK05671 58 -EVDSFDFS--QVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSA-QAPNVVPEVNAERLASLAAPFLVS-SPS 130 (336)
T ss_pred -eCChHHhc--CCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCC-CCCEEecccCHHHHccccCCCEEE-CCC
Confidence 23334463 79999999999989999999889998 467543 454 7999999999998875 2257999 999
Q ss_pred cchhhhHHHHHHhhhhcCceEEEEEee
Q 023894 241 CMLIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 241 CTTn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
|+|.+++..|++|++.+++++++|++-
T Consensus 131 C~~t~~~laL~PL~~~~~~~~v~v~t~ 157 (336)
T PRK05671 131 ASAVALAVALAPLKGLLDIQRVQVTAC 157 (336)
T ss_pred cHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 999999999999999999999998763
No 32
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.58 E-value=8.4e-15 Score=139.17 Aligned_cols=162 Identities=20% Similarity=0.271 Sum_probs=107.7
Q ss_pred cceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEE-cCCCChhh-hhhhccccccccccCceEEEecCCeEEECCeEEE
Q 023894 84 VAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV-NDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK 160 (275)
Q Consensus 84 ~~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI-nd~~~~~~-~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~ 160 (275)
+|++||+|+| +|.+|+.++|+|.++ +.++++.+ ........ +..++.+ ..+|.+.+.. +.+.
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~~s~~~~G~~~~~~~~~-~~~~~~~~~~------------~~~~ 65 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANH--PWFEVTALAASERSAGKTYGEAVRW-QLDGPIPEEV------------ADME 65 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEEcChhhcCCcccccccc-cccccccccc------------cceE
Confidence 3568999999 999999999999865 35788887 33311110 1101000 0000011100 1233
Q ss_pred EEecCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC-CCCCCCCeEEeecCcccCCC-C--------
Q 023894 161 VVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP-AKGADIPTYVVGVNEKDYDH-E-------- 230 (275)
Q Consensus 161 V~~~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP-~k~~DiP~iV~GVN~~~~~~-~-------- 230 (275)
+. ..+|+. |. ++|+|++|++.....+.+....+.|++.|.+|+. +..++.|.+++++|++.|.. +
T Consensus 66 v~-~~~~~~--~~--~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~ 140 (349)
T PRK08664 66 VV-STDPEA--VD--DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGW 140 (349)
T ss_pred EE-eCCHHH--hc--CCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccC
Confidence 33 234554 32 7899999999998888887777889853333332 23336899999999876632 1
Q ss_pred CCeeeeeCCCcchhhhHHHHHHhhhhcCceEEEEEee
Q 023894 231 VANIVRSVYSCMLIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 231 ~~~IIS~nASCTTn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
+.+||| ||+|+|+|+++.|++|++ |||+++.|++.
T Consensus 141 ~~~iVa-~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~ 175 (349)
T PRK08664 141 DGFIVT-NPNCSTIGLVLALKPLMD-FGIERVHVTTM 175 (349)
T ss_pred CceEEE-ccCHHHHHHHHHHHHHHH-CCCcEEEEEEE
Confidence 026999 999999999999999999 99999999875
No 33
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.57 E-value=1.1e-14 Score=138.05 Aligned_cols=160 Identities=17% Similarity=0.215 Sum_probs=108.3
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCC-Ch-hhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GV-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~-~~-~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~ 163 (275)
+||+|+| +|.+|+.++|+|.+++ .++++++-+.. .. +....++.+ ..|+.+.+ .+ ..+.+..
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~--~~~l~~v~~~~~~~g~~~~~~~~~-~~~~~~~~--------~~----~~~~~~~ 65 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHP--YFELAKVVASPRSAGKRYGEAVKW-IEPGDMPE--------YV----RDLPIVE 65 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--CceEEEEEEChhhcCCcchhhccc-cccCCCcc--------cc----ceeEEEe
Confidence 4899999 8999999999998764 37887774331 00 111111110 00000000 00 1223321
Q ss_pred cCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC-CCCCCCCeEEeecCcccCCC-C-------CCee
Q 023894 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP-AKGADIPTYVVGVNEKDYDH-E-------VANI 234 (275)
Q Consensus 164 ~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP-~k~~DiP~iV~GVN~~~~~~-~-------~~~I 234 (275)
.+++ .| .++|+|++|++.....+.+....++|++-+.+|+. +.+++.|.+++++|++.|.. + +.+|
T Consensus 66 -~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~i 140 (341)
T TIGR00978 66 -PEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFI 140 (341)
T ss_pred -CCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccE
Confidence 2333 23 37999999999999999998888899953333433 45557899999999986752 1 1359
Q ss_pred eeeCCCcchhhhHHHHHHhhhhcCceEEEEEee
Q 023894 235 VRSVYSCMLIKMATLFHFISLLTNLASAAMLLA 267 (275)
Q Consensus 235 IS~nASCTTn~LaPvlkvL~~~fgI~~v~vt~~ 267 (275)
|+ ||+|+|+|+++.|++|+++++|+++.|++.
T Consensus 141 Va-nPgC~~t~~~lal~pL~~~~~i~~v~v~t~ 172 (341)
T TIGR00978 141 VT-NPNCTTAGLTLALKPLIDAFGIKKVHVTTM 172 (341)
T ss_pred Ee-CCCcHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 99 999999999999999999999999999876
No 34
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.41 E-value=1.2e-12 Score=124.48 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=107.1
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~ 163 (275)
|++||+|.| +|.+|+.++|.|.++ +.++++++-+.... ...+. ..|+.+... . ...+ .
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~~~~~~---g~~l~--~~~~~~~~~----------~---~~~~-~ 59 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSA---GKPLS--DVHPHLRGL----------V---DLVL-E 59 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcC--CCceEEEEECcccc---CcchH--HhCcccccc----------c---Ccee-e
Confidence 347999999 799999999999865 35788777653110 00010 111111100 0 0111 1
Q ss_pred cCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCC-C------------------CCeEEee
Q 023894 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGA-D------------------IPTYVVG 221 (275)
Q Consensus 164 ~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~-D------------------iP~iV~G 221 (275)
+.++..+ .++|+|+.|++.....+.+...+++|+ +||+.. ++++ | +|..+++
T Consensus 60 --~~~~~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe 133 (343)
T PRK00436 60 --PLDPEIL--AGADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPE 133 (343)
T ss_pred --cCCHHHh--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCc
Confidence 1222233 369999999999999999999888887 788654 3533 4 7899999
Q ss_pred cCcccCCCCCCeeeeeCCCcchhhhHHHHHHhhhhcCce--EEEEEe
Q 023894 222 VNEKDYDHEVANIVRSVYSCMLIKMATLFHFISLLTNLA--SAAMLL 266 (275)
Q Consensus 222 VN~~~~~~~~~~IIS~nASCTTn~LaPvlkvL~~~fgI~--~v~vt~ 266 (275)
+|.+.++. .+||+ ||+|+|.+++..|++|++..+|+ +++|++
T Consensus 134 ~~~~~i~~--~~iIa-nPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~ 177 (343)
T PRK00436 134 LNREEIKG--ARLIA-NPGCYPTASLLALAPLLKAGLIDPDSIIIDA 177 (343)
T ss_pred cCHHHhcC--CCEEE-CCCCHHHHHHHHHHHHHHcCCCCCCCEEEEE
Confidence 99998875 47999 99999999999999999998888 787775
No 35
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.37 E-value=2.4e-12 Score=122.66 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=104.0
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
+||+|.| +|.+|+.++|.|.++ +.++++++-+... ..... +...|+.+.+. ....+ ...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~--sagk~--~~~~~~~l~~~-------------~~~~~-~~~ 60 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRE--SAGKP--VSEVHPHLRGL-------------VDLNL-EPI 60 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccch--hcCCC--hHHhCcccccc-------------CCcee-ecC
Confidence 4899999 799999999999865 4578775532200 00000 01112111100 01112 111
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCC-------------------CCCeEEeecC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGA-------------------DIPTYVVGVN 223 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~-------------------DiP~iV~GVN 223 (275)
++++ |.+ ++|+||.|++....++.+.+.+++|+ +||+.. ++++ +.|..++++|
T Consensus 61 ~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n 135 (346)
T TIGR01850 61 DEEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELH 135 (346)
T ss_pred CHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccC
Confidence 2322 322 79999999999999999999888886 567543 3543 5899999999
Q ss_pred cccCCCCCCeeeeeCCCcchhhhHHHHHHhhhhcCce--EEEEEe
Q 023894 224 EKDYDHEVANIVRSVYSCMLIKMATLFHFISLLTNLA--SAAMLL 266 (275)
Q Consensus 224 ~~~~~~~~~~IIS~nASCTTn~LaPvlkvL~~~fgI~--~v~vt~ 266 (275)
.+.+.. .+||+ ||+|+|.++...|++|+++..|+ +++|++
T Consensus 136 ~~~i~~--~~iia-nPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~ 177 (346)
T TIGR01850 136 REEIKG--ARLIA-NPGCYPTATLLALAPLLKEGLIDPTSIIVDA 177 (346)
T ss_pred HHHhCC--CcEEE-cCCcHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 988865 47999 99999999999999999998887 676654
No 36
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.34 E-value=3.2e-12 Score=120.56 Aligned_cols=150 Identities=23% Similarity=0.204 Sum_probs=105.5
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
+++||||+|+|+||+.++..+.+ .+.++++++-|. +.+... +++-..+|. ... .+|-.- +.
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~--~~~velvAVvdi-d~es~g--la~A~~~Gi---~~~--------~~~ie~-LL-- 63 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILR--SEHLEPGAMVGI-DPESDG--LARARRLGV---ATS--------AEGIDG-LL-- 63 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhc--CCCcEEEEEEeC-ChhhHH--HHHHHHcCC---Ccc--------cCCHHH-HH--
Confidence 46899999999999998887765 346899999887 333211 111111221 000 011000 10
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEe-CCCCCCCCCeEEeecCcccCCCC-CCeeeeeCCCcc
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT-APAKGADIPTYVVGVNEKDYDHE-VANIVRSVYSCM 242 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIIS-AP~k~~DiP~iV~GVN~~~~~~~-~~~IIS~nASCT 242 (275)
+..+|. ++|+|+++||.....+.+.+.+++|+ .+|+ .|.. +.|++||+||.+..... ..+||+ |++|+
T Consensus 64 ---~~~~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~--~~PlvVP~VN~~~~~~~~~~~iia-~p~~a 133 (302)
T PRK08300 64 ---AMPEFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAA--IGPYCVPAVNLDEHLDAPNVNMVT-CGGQA 133 (302)
T ss_pred ---hCcCCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccc--cCCcccCcCCHHHHhcccCCCEEE-CccHH
Confidence 112343 69999999999999999999999998 5554 4443 57999999999877542 158999 99999
Q ss_pred hhhhHHHHHHhhhhcCceEEEE
Q 023894 243 LIKMATLFHFISLLTNLASAAM 264 (275)
Q Consensus 243 Tn~LaPvlkvL~~~fgI~~v~v 264 (275)
|+.++..|+.+++. ++.+++-
T Consensus 134 ti~~v~Al~~v~~~-~~~eIva 154 (302)
T PRK08300 134 TIPIVAAVSRVAPV-HYAEIVA 154 (302)
T ss_pred HHHHHHHhcccCcC-ceeeeee
Confidence 99999999998866 8888883
No 37
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.32 E-value=7.7e-12 Score=118.47 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=99.1
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~ 163 (275)
|++||||+| +|-+|+.++|+|.+++ .++++.+... ++..+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp--~~~l~~~~s~--------------------------~~~~~----------- 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRS--DIELLSIPEA--------------------------KRKDA----------- 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCC--CeEEEEEecC--------------------------CCCcc-----------
Confidence 568999999 9999999999998875 4776555321 00000
Q ss_pred cCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeecCcccCCC-CCCeeeeeCC
Q 023894 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH-EVANIVRSVY 239 (275)
Q Consensus 164 ~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~DiP~iV~GVN~~~~~~-~~~~IIS~nA 239 (275)
.+.+..|. ++|+||.|++.-.+++.+++..+.|+ +||+.. +.+++.|..++++|++..+. ...++|+ ||
T Consensus 42 --~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~Ia-nP 114 (313)
T PRK11863 42 --AARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVA-NP 114 (313)
T ss_pred --cCchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEE-cC
Confidence 11122344 68999999999999999999888898 577654 46668999999998653322 1257999 99
Q ss_pred CcchhhhHHHHHHhhhhcCceEE
Q 023894 240 SCMLIKMATLFHFISLLTNLASA 262 (275)
Q Consensus 240 SCTTn~LaPvlkvL~~~fgI~~v 262 (275)
+|.+.++...|++|++...|++.
T Consensus 115 gC~~Ta~~laL~PL~~~~li~~~ 137 (313)
T PRK11863 115 GCYPTGAIALLRPLVDAGLLPAD 137 (313)
T ss_pred CcHHHHHHHHHHHHHHcCCcccC
Confidence 99999999999999997666543
No 38
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.29 E-value=1.5e-11 Score=119.12 Aligned_cols=153 Identities=10% Similarity=0.043 Sum_probs=101.5
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~ 163 (275)
+++||+|.| +|.+|+.++|+|.+++ .++++.+... +..|+ .+.. .... +.+....-+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP--~~el~~l~s~-------------~saG~---~i~~-~~~~--l~~~~~~~~~ 95 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHP--DFEITVMTAD-------------RKAGQ---SFGS-VFPH--LITQDLPNLV 95 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCC--CCeEEEEECh-------------hhcCC---Cchh-hCcc--ccCcccccee
Confidence 667999999 9999999999999874 4676555322 10111 0000 0000 1111111111
Q ss_pred cCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCC--------CCeEEeecCccc-CCC--
Q 023894 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGAD--------IPTYVVGVNEKD-YDH-- 229 (275)
Q Consensus 164 ~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~D--------iP~iV~GVN~~~-~~~-- 229 (275)
.-++ .+|. ++|+||.|+|.-.+++.++. ++.|+ +||+.. +.+++ .|..++++|.+. |.-
T Consensus 96 ~~~~--~~~~--~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE 168 (381)
T PLN02968 96 AVKD--ADFS--DVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTE 168 (381)
T ss_pred cCCH--HHhc--CCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccch
Confidence 1122 2343 79999999999888888887 57775 466433 45556 788888888764 431
Q ss_pred ------CCCeeeeeCCCcchhhhHHHHHHhhhhcCc--eEEEEEe
Q 023894 230 ------EVANIVRSVYSCMLIKMATLFHFISLLTNL--ASAAMLL 266 (275)
Q Consensus 230 ------~~~~IIS~nASCTTn~LaPvlkvL~~~fgI--~~v~vt~ 266 (275)
...+||+ ||+|.|.++...|++|+++++| ++++|++
T Consensus 169 ~~r~~i~~~~iIA-nPgC~~t~~~laL~PL~~~~~i~~~~iiv~a 212 (381)
T PLN02968 169 LQREEIKSARLVA-NPGCYPTGIQLPLVPLVKAGLIEPDNIIIDA 212 (381)
T ss_pred hCHHHhcCCCEEE-CCCCHHHHHHHHHHHHHHcCCCCCceEEEEE
Confidence 1257999 9999999999999999999999 6777765
No 39
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.13 E-value=4.6e-11 Score=111.14 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=105.7
Q ss_pred eeEE-EEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 87 LKVA-ING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 87 ~kVa-InG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
.|+| |.| +|.+|+.++-+|.+++ .++|-+.... .++-==+| -.-|+|..+.-.-+ .-..+.|. +
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdhP--~f~ikvLgAS----~RSAGK~y-a~a~~wkqt~~lp~------~~~e~~V~-e 69 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDHP--YFSIKVLGAS----KRSAGKRY-AFAGNWKQTDLLPE------SAHEYTVE-E 69 (361)
T ss_pred ccccceeeccchhHHHHHHHhccCC--cceeeeeccc----ccccCCce-Eecccchhcccccc------hhhhhhHh-h
Confidence 3566 999 9999999999987764 3554333211 00000001 01122322221100 00234443 3
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeecCcccCCC----------CC
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH----------EV 231 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~DiP~iV~GVN~~~~~~----------~~ 231 (275)
-+++.|. ++|||+...+.....|.-....++|. +|+|.. ++.+++|++|+.||.|.++. .+
T Consensus 70 c~~~~F~----ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~ 143 (361)
T KOG4777|consen 70 CTADSFN----ECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGK 143 (361)
T ss_pred cChhhcc----cccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCC
Confidence 3566663 89999999999888888888888888 788754 36668999999999987653 11
Q ss_pred CeeeeeCCCcchhhhHHHHHHhhhhc-CceEEEEEe
Q 023894 232 ANIVRSVYSCMLIKMATLFHFISLLT-NLASAAMLL 266 (275)
Q Consensus 232 ~~IIS~nASCTTn~LaPvlkvL~~~f-gI~~v~vt~ 266 (275)
--||. |++|+|..++..||+||++| .|++.++++
T Consensus 144 G~iI~-nsNCSTa~~v~plkpL~~~fgpi~~~~v~t 178 (361)
T KOG4777|consen 144 GAIIA-NSNCSTAICVMPLKPLHHHFGPIKRMVVST 178 (361)
T ss_pred ceEEe-cCCCCeeeEEeechhHHhhccchhhhhhhh
Confidence 35999 99999999999999999999 677777665
No 40
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.07 E-value=6.1e-10 Score=105.58 Aligned_cols=130 Identities=14% Similarity=0.115 Sum_probs=97.0
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
.||+|.| .|-.|..++|+|..++ .++++.+.... . +...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP--~~el~~l~s~~---------------------------~-----------~~~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD--DIELLSIAPDR---------------------------R-----------KDAA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC--CeEEEEEeccc---------------------------c-----------cCcC
Confidence 4899999 9999999999998764 57876663220 0 0001
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeecCcccCCC-CCCeeeeeCCCc
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYDH-EVANIVRSVYSC 241 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~DiP~iV~GVN~~~~~~-~~~~IIS~nASC 241 (275)
+++++ + .++|+||.|++...+++.++...++|+ +||+.. +.+++.|..++++|.+..+. ...++|| ||+|
T Consensus 42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIA-nPgC 115 (310)
T TIGR01851 42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIA-NPGC 115 (310)
T ss_pred CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEE-CCCC
Confidence 22222 1 268999999999999999998888888 577554 46668999999998653322 1157999 9999
Q ss_pred chhhhHHHHHHhhhhcCceEE
Q 023894 242 MLIKMATLFHFISLLTNLASA 262 (275)
Q Consensus 242 TTn~LaPvlkvL~~~fgI~~v 262 (275)
.+.++...|++|+++..|++.
T Consensus 116 ~aTa~~LaL~PL~~~~li~~~ 136 (310)
T TIGR01851 116 YPTGFIALMRPLVEAGILPAD 136 (310)
T ss_pred HHHHHHHHHHHHHHcCCcccc
Confidence 999999999999998767554
No 41
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=98.99 E-value=2.1e-09 Score=100.77 Aligned_cols=151 Identities=23% Similarity=0.199 Sum_probs=103.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
+||||+|.|+||+.++..+.+. +.+++++|-|. +++... +++-..+|. . ...++...-+ .+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~--~~~elvaV~d~-d~es~~--la~A~~~Gi---~--------~~~~~~e~ll---~~ 62 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS--EHLEMVAMVGI-DPESDG--LARARELGV---K--------TSAEGVDGLL---AN 62 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC--CCcEEEEEEeC-CcccHH--HHHHHHCCC---C--------EEECCHHHHh---cC
Confidence 6899999999999887766652 35899999887 333211 000011111 1 1111111001 01
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCC-CCCeeeeeCCCcchhh
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDH-EVANIVRSVYSCMLIK 245 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~-~~~~IIS~nASCTTn~ 245 (275)
.++|+|++||+.....+.+.+.+++|+ .||.-.|.. +.|++|+.||.+.... ...+||+ +++|.|+.
T Consensus 63 --------~dIDaV~iaTp~~~H~e~a~~al~aGk-~VIdekPa~--~~plvvp~VN~~~~~~~~~~~iv~-c~~~atip 130 (285)
T TIGR03215 63 --------PDIDIVFDATSAKAHARHARLLAELGK-IVIDLTPAA--IGPYVVPAVNLDEHLDAPNVNMVT-CGGQATIP 130 (285)
T ss_pred --------CCCCEEEECCCcHHHHHHHHHHHHcCC-EEEECCccc--cCCccCCCcCHHHHhcCcCCCEEE-cCcHHHHH
Confidence 268999999999999999999999997 244445543 5799999999887654 1168999 99999999
Q ss_pred hHHHHHHhhhhcCceEEEEEeecc
Q 023894 246 MATLFHFISLLTNLASAAMLLAPQ 269 (275)
Q Consensus 246 LaPvlkvL~~~fgI~~v~vt~~~~ 269 (275)
++..++.+++...+ +++-+..+-
T Consensus 131 ~~~al~r~~d~~~~-~iv~ti~s~ 153 (285)
T TIGR03215 131 IVAAISRVAPVHYA-EIVASIASR 153 (285)
T ss_pred HHHHHHHhhccccE-EEEEEEEee
Confidence 99999999988755 666555543
No 42
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.77 E-value=6.4e-09 Score=84.52 Aligned_cols=113 Identities=26% Similarity=0.288 Sum_probs=75.9
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCC--hhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGG--VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~--~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
||+|+| +|.+|+.++|+|.++ +.++++.+-.... -+.+. ..++.+.+ ...+.+..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~~~g~~~~------~~~~~~~~-------------~~~~~~~~- 58 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSRSAGKPLS------EVFPHPKG-------------FEDLSVED- 58 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTTTTTSBHH------HTTGGGTT-------------TEEEBEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeeccccCCeee------hhcccccc-------------ccceeEee-
Confidence 799999 999999999999985 4578777654411 11222 22221111 11233332
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC---CCCCCCCeEEeecCcccCC
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDYD 228 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP---~k~~DiP~iV~GVN~~~~~ 228 (275)
.+++.+ .++|+||.|++....++.+++.++.|+ .||+.. +.+++.|++++++|.+.+.
T Consensus 59 ~~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 59 ADPEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp TSGHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred cchhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 233333 389999999999999999999999999 677654 3555789999999987653
No 43
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.95 E-value=2.1e-05 Score=63.46 Aligned_cols=113 Identities=27% Similarity=0.279 Sum_probs=66.7
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
||+|.| .|++|+.+++.+.+.+ .++++++-.. + ......++ ..|++ +. .+ +. .+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~--~~~l~av~~~-~-~~~~~~~~--~~~~~----~~------------~~-~~--~~ 55 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP--DFEVVALAAS-A-RSAGKRVS--EAGPH----LK------------GE-VV--LE 55 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCC--CceEEEEEec-h-hhcCcCHH--HHCcc----cc------------cc-cc--cc
Confidence 689999 7999999999887643 4788877332 0 00000000 01110 00 00 01 12
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHH---HHHHcCCCEEEEeCC---CCCCCCCeEEeecCcccC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAG---KHIQAGAKKVIITAP---AKGADIPTYVVGVNEKDY 227 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~---~Hl~aGakkVIISAP---~k~~DiP~iV~GVN~~~~ 227 (275)
.+..+|...+.|+||.|++.....+.+. +.++.|+ ++|+.. +.++|.|..++++|.+.+
T Consensus 56 ~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 56 LEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred cccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHh
Confidence 2223344458899999999887777433 2334555 788543 355578999999997654
No 44
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.80 E-value=6.7e-05 Score=72.47 Aligned_cols=143 Identities=19% Similarity=0.226 Sum_probs=90.5
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCC-ChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEE
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~-~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~ 162 (275)
+++||+|+| .|-.|-.++|+|.+++ .+++..+.... .-+.+. ..|-.+.+-+ ..++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp--~ve~~~~ss~~~~g~~~~------~~~p~l~g~~-------------~l~~- 58 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHP--DVELILISSRERAGKPVS------DVHPNLRGLV-------------DLPF- 58 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC--CeEEEEeechhhcCCchH------HhCccccccc-------------cccc-
Confidence 457999999 9999999999999875 47754443320 000000 1111111100 0111
Q ss_pred ecCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC----CCC---------------CCCeEEeec-
Q 023894 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA----KGA---------------DIPTYVVGV- 222 (275)
Q Consensus 163 ~~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~----k~~---------------DiP~iV~GV- 222 (275)
+.-+++.+ ...++|+||.|+.--.+++.++..++.|++ ||+..+ ++. ...--|||.
T Consensus 59 ~~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLp 134 (349)
T COG0002 59 QTIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLP 134 (349)
T ss_pred ccCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCc
Confidence 11244444 234689999999999999999999999995 775442 100 012456654
Q ss_pred --CcccCCCCCCeeeeeCCCcchhhhHHHHHHhhhh
Q 023894 223 --NEKDYDHEVANIVRSVYSCMLIKMATLFHFISLL 256 (275)
Q Consensus 223 --N~~~~~~~~~~IIS~nASCTTn~LaPvlkvL~~~ 256 (275)
|.+++.. .+.|+ ||.|-.+|....|++|-++
T Consensus 135 El~~e~i~~--A~lIA-nPGCypTa~iLal~PL~~~ 167 (349)
T COG0002 135 ELHREKIRG--AKLIA-NPGCYPTAAILALAPLVKA 167 (349)
T ss_pred ccCHHHHhc--CCEee-CCCchHHHHHHHHHHHHHc
Confidence 4455543 57999 9999999988888888865
No 45
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.67 E-value=9.3e-05 Score=69.27 Aligned_cols=92 Identities=18% Similarity=0.321 Sum_probs=62.7
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
|.+||||+|+|.||+.+++.|.......+++++|++.. .+....+. +. .++.
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~-~~~~~~~~------------------------~~-~~~~-- 52 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNA-ADLPPALA------------------------GR-VALL-- 52 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCC-HHHHHHhh------------------------cc-Cccc--
Confidence 34799999999999999998865333458898887762 21111111 00 1121
Q ss_pred CCCCCC-CcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 023894 165 RDPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (275)
Q Consensus 165 ~dP~~i-~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIIS 207 (275)
.+++++ .| ..|+|+||.|.-.-++.+.+.|++|+.=+++|
T Consensus 53 ~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~S 93 (267)
T PRK13301 53 DGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICS 93 (267)
T ss_pred CCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 345553 44 58999999999888899999999998755555
No 46
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.52 E-value=0.0002 Score=66.07 Aligned_cols=91 Identities=24% Similarity=0.266 Sum_probs=58.4
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCC-ChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~-~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
+||||.|+|+||+.+++.+... +.+++++|-+.. ..+.....+ . ..+.++ .
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~--~~~~l~~v~~~~~~~~~~~~~~----------------~--------~~~~~~--~ 53 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD--PDLRVDWVIVPEHSIDAVRRAL----------------G--------EAVRVV--S 53 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC--CCceEEEEEEcCCCHHHHhhhh----------------c--------cCCeee--C
Confidence 6999999999999999988654 346666664321 111111000 0 012232 3
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (275)
+.+++ +..+|+|+|||+.....+.+.+.|++|.. |++-.|
T Consensus 54 d~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi~s~ 93 (265)
T PRK13303 54 SVDAL---PQRPDLVVECAGHAALKEHVVPILKAGID-CAVISV 93 (265)
T ss_pred CHHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEEeCh
Confidence 44444 23689999999998888899999999964 555444
No 47
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.47 E-value=0.00038 Score=66.76 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=62.2
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
+++||+|+|+|+|||.+++++..+ +.+++|+|-+..+.+.+.. .+.++..
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~--pd~ELVgV~dr~~~~~~~~----------------------------~~~v~~~ 51 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQ--PDMELVGVFSRRGAETLDT----------------------------ETPVYAV 51 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhC--CCcEEEEEEcCCcHHHHhh----------------------------cCCcccc
Confidence 358999999999999999988764 4589999977733222110 0011111
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (275)
.+.+.+ . ..+|+|+-||+.....+.+...|++|.. ||-+.+
T Consensus 52 ~d~~e~--l-~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s~~ 92 (324)
T TIGR01921 52 ADDEKH--L-DDVDVLILCMGSATDIPEQAPYFAQFAN-TVDSFD 92 (324)
T ss_pred CCHHHh--c-cCCCEEEEcCCCccCHHHHHHHHHcCCC-EEECCC
Confidence 121111 1 3689999999999999999999999984 665543
No 48
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.37 E-value=0.00035 Score=64.56 Aligned_cols=95 Identities=22% Similarity=0.285 Sum_probs=57.5
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
+||+|+| +|++|+.+++.+.+. +.+++|++-|..+.+.. .+|- +.+.+.. . .| +.+. .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~--~~~elvav~d~~~~~~~----~~~~--~~~~~~~----~-----~g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA--EGLQLVAAFERHGSSLQ----GTDA--GELAGIG----K-----VG--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCcccc----CCCH--HHhcCcC----c-----CC--ceee--C
Confidence 6999999 899999999998764 45899998874222111 0110 1100000 0 01 2222 2
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVII 206 (275)
+++++ ...+|+|||+|......+.+...++.|.. ||+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 44444 13578888888777777777777888864 555
No 49
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.37 E-value=0.0006 Score=65.14 Aligned_cols=37 Identities=30% Similarity=0.560 Sum_probs=30.1
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCC-------CCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~-------~~~l~iVaInd~ 121 (275)
|.+||+|.|||.||+.+++.+.++. +..+++++|-|.
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~ 44 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS 44 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence 4689999999999999999987642 225899999774
No 50
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.05 E-value=0.0016 Score=60.19 Aligned_cols=92 Identities=25% Similarity=0.342 Sum_probs=56.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
++|+|+|.|+||..+++.+.+-. .+++++++-|. +.++.-++.+ +. .++.. .+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~-~~ek~~~~~~--~~------------------~~~~~-----s~ 53 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDR-DEEKAKELEA--SV------------------GRRCV-----SD 53 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-cceeEEEEecC-CHHHHHHHHh--hc------------------CCCcc-----cc
Confidence 47999999999999999875422 45899999887 3333333321 11 11100 01
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISA 208 (275)
.+++ ..++|+++||.+..--++...+.|++|..-+|+|.
T Consensus 54 ide~---~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SV 92 (255)
T COG1712 54 IDEL---IAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSV 92 (255)
T ss_pred HHHH---hhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEec
Confidence 1111 13567777877777677777777777776555553
No 51
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.98 E-value=0.0024 Score=58.87 Aligned_cols=92 Identities=22% Similarity=0.248 Sum_probs=59.2
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
+||+|+|+|+||+.+++.+.... ..+++++|-|. +.+.+..+.+ .+ + ..+. .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~-~~~elv~v~d~-~~~~a~~~a~---~~-----------------~---~~~~--~~ 54 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGR-INAELYAFYDR-NLEKAENLAS---KT-----------------G---AKAC--LS 54 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCC-CCeEEEEEECC-CHHHHHHHHH---hc-----------------C---CeeE--CC
Confidence 68999999999999999887542 24788888777 3333322211 00 0 0111 23
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (275)
.+++- .++|+|++|++...-.+.+...+++|.. |++..+
T Consensus 55 ~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv~s~ 93 (265)
T PRK13304 55 IDELV---EDVDLVVECASVNAVEEVVPKSLENGKD-VIIMSV 93 (265)
T ss_pred HHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCC-EEEEch
Confidence 34432 2689999999887777888888888864 555444
No 52
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.98 E-value=0.0015 Score=63.09 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=29.6
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCC-------CCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKD-------SPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~-------~~l~iVaInd~ 121 (275)
+.+||+|.|||.||+.++|+|.+++. ..+++++|-+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~ 45 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR 45 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec
Confidence 67899999999999999999987642 34677666654
No 53
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.96 E-value=0.0013 Score=63.63 Aligned_cols=36 Identities=31% Similarity=0.549 Sum_probs=28.6
Q ss_pred eeeEEEECCChhHHHHHHHHHhCC-------CCCceEEEEcCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~-------~~~l~iVaInd~ 121 (275)
+++|+|.|||.||+.+++.|.++. +-++++++|-+.
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~ 44 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR 44 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence 589999999999999999987643 235778877654
No 54
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.95 E-value=0.0023 Score=61.28 Aligned_cols=35 Identities=37% Similarity=0.685 Sum_probs=28.8
Q ss_pred eeEEEECCChhHHHHHHHHHhC-----CCCCceEEEEcCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGR-----KDSPLDVVVVNDS 121 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er-----~~~~l~iVaInd~ 121 (275)
+||+|.|||.||+.+++.|.++ .+..+++|+|.|.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds 40 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS 40 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence 4899999999999999998774 2245889998775
No 55
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.89 E-value=0.0015 Score=62.46 Aligned_cols=108 Identities=22% Similarity=0.340 Sum_probs=58.6
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCC-------CCCceEEEEcCCC-Ch---h--hhhhhccccccccccCceEEEecCCe
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDSG-GV---K--NASHLLKYDSLLGTFKADVKIVDNET 151 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~-------~~~l~iVaInd~~-~~---~--~~a~LLkyDS~hG~f~~~v~~~e~~~ 151 (275)
|+++|+|.|||.||+.++|.|.++. +-++++++|.|.. .+ + ....+++|-..+|... .
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~---------~ 71 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS---------N 71 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh---------h
Confidence 4589999999999999999987642 2248899997741 00 0 0011111111011000 0
Q ss_pred EEECCeEEEEEecCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 023894 152 ISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (275)
Q Consensus 152 l~inGk~I~V~~~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISA 208 (275)
+.-+ ... ...+++++ +.+..+|+|||+|+.....+...+.++.|.. |+|+
T Consensus 72 ~~~~---~~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~~--VVta 121 (336)
T PRK08374 72 WGND---YEV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGKS--VVTS 121 (336)
T ss_pred cccc---ccc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCCc--EEEC
Confidence 0000 000 00022222 2235689999999877666677777888873 5554
No 56
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.89 E-value=0.0034 Score=58.21 Aligned_cols=93 Identities=24% Similarity=0.210 Sum_probs=59.3
Q ss_pred cceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 023894 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (275)
Q Consensus 84 ~~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~ 163 (275)
++++||||+|+|+||+.+++.|... .+.+++++|-+. +.+...-+.+ .+|. . ..
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr-~~~~a~~~a~---~~g~---~----------------~~-- 57 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVR-DPQRHADFIW---GLRR---P----------------PP-- 57 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECC-CHHHHHHHHH---hcCC---C----------------cc--
Confidence 4568999999999999999988653 234788888776 3333221111 0110 0 00
Q ss_pred cCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 023894 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (275)
Q Consensus 164 ~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVII 206 (275)
..+++++-. ++|+|++|++...-.+.....+++|.. |++
T Consensus 58 ~~~~eell~---~~D~Vvi~tp~~~h~e~~~~aL~aGk~-Vi~ 96 (271)
T PRK13302 58 VVPLDQLAT---HADIVVEAAPASVLRAIVEPVLAAGKK-AIV 96 (271)
T ss_pred cCCHHHHhc---CCCEEEECCCcHHHHHHHHHHHHcCCc-EEE
Confidence 023344421 479999999988878888888888853 444
No 57
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.84 E-value=0.0021 Score=63.23 Aligned_cols=94 Identities=27% Similarity=0.393 Sum_probs=56.1
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCC-------CCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCe
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK 157 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~-------~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk 157 (275)
+++||||.|+|.||+.+++.|.++. +.++++++|-+. +.+... -+. ..+
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~-~~~~~~-~~~---------------------~~~- 57 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR-DLEKDR-GVD---------------------LPG- 57 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC-Chhhcc-CCC---------------------Ccc-
Confidence 4689999999999999999886542 235788888665 111100 000 000
Q ss_pred EEEEEecCCCCCCCcccccccEEEcCCCCC-CChhhHHHHHHcCCCEEEEeC
Q 023894 158 LIKVVSNRDPLQLPWAELGIDIVIEGTGVF-VDGPGAGKHIQAGAKKVIITA 208 (275)
Q Consensus 158 ~I~V~~~~dP~~i~w~~~giDiVie~TG~f-~~~e~a~~Hl~aGakkVIISA 208 (275)
..+. .+++++ ..+.++|+|+||||.. ...+.....|++|. -|+|+
T Consensus 58 -~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk--hVVta 103 (426)
T PRK06349 58 -ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK--HVVTA 103 (426)
T ss_pred -ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC--eEEEc
Confidence 0111 223322 1234789999999864 23466667788885 45654
No 58
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.81 E-value=0.0026 Score=58.36 Aligned_cols=34 Identities=32% Similarity=0.597 Sum_probs=28.2
Q ss_pred eeeEEEECC-ChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 86 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 86 ~~kVaInGf-GrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
++||+|+|. |++|+.+++.+.+. +.++++++-|.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~ 35 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDR 35 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEec
Confidence 369999996 99999999988754 34899998776
No 59
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.32 E-value=0.015 Score=53.56 Aligned_cols=137 Identities=28% Similarity=0.320 Sum_probs=84.1
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCce--E-EEEcCC--CChhhhhhhccccccccccCceEEEecCCeEEECCeEE
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLD--V-VVVNDS--GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLI 159 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~--i-VaInd~--~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I 159 (275)
.+.||+|+|.|.||.-++--++.. +..++ . |.| |+ ..+...+.| -...+| |+ +.|
T Consensus 3 sk~kvaiigsgni~tdlm~k~lr~-g~~le~~~mvgi-dp~sdglaraarl-gv~tt~----------eg----v~~--- 62 (310)
T COG4569 3 SKRKVAIIGSGNIGTDLMIKILRH-GQHLEMAVMVGI-DPQSDGLARAARL-GVATTH----------EG----VIG--- 62 (310)
T ss_pred CcceEEEEccCcccHHHHHHHHhc-CCcccceeEEcc-CCCccHHHHHHhc-CCcchh----------hH----HHH---
Confidence 357999999999998666444433 22233 2 223 33 234444433 222333 11 011
Q ss_pred EEEecCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccC-CCCCCeeeeeC
Q 023894 160 KVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDY-DHEVANIVRSV 238 (275)
Q Consensus 160 ~V~~~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~-~~~~~~IIS~n 238 (275)
+. +-|+ + .++|+|||+|......+.+.+..++|.+-+=+| |.. --|-+|+-+|.+.- +...-+.|.
T Consensus 63 -ll--~~p~---~--~di~lvfdatsa~~h~~~a~~~ae~gi~~idlt-paa--igp~vvp~~n~~eh~~a~nvnmvt-- 129 (310)
T COG4569 63 -LL--NMPE---F--ADIDLVFDATSAGAHVKNAAALAEAGIRLIDLT-PAA--IGPYVVPVVNLEEHVDALNVNMVT-- 129 (310)
T ss_pred -HH--hCCC---C--CCcceEEeccccchhhcchHhHHhcCCceeecc-hhc--cCCeeccccchHHhcCCCCcceEe--
Confidence 11 1232 1 278899999999999999999999999643333 431 13889999998653 332267888
Q ss_pred CCcchhhhHHHHHHhhhh
Q 023894 239 YSCMLIKMATLFHFISLL 256 (275)
Q Consensus 239 ASCTTn~LaPvlkvL~~~ 256 (275)
|-.++-.|++....+.
T Consensus 130 --cggqatipiv~avsrv 145 (310)
T COG4569 130 --CGGQATIPIVAAVSRV 145 (310)
T ss_pred --ecCcccchhhhhhhhh
Confidence 8888888888776653
No 60
>PRK11579 putative oxidoreductase; Provisional
Probab=96.27 E-value=0.018 Score=54.31 Aligned_cols=92 Identities=23% Similarity=0.415 Sum_probs=60.3
Q ss_pred eeeEEEECCChhHHH-HHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 86 KLKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 86 ~~kVaInGfGrIGR~-vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
++||||+|+|.||+. .++.+... +.+++++|.|. +.+.++- +| . + ++++
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~--~~~~l~av~d~-~~~~~~~--~~-------~--------------~--~~~~-- 53 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGT--PGLELAAVSSS-DATKVKA--DW-------P--------------T--VTVV-- 53 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhC--CCCEEEEEECC-CHHHHHh--hC-------C--------------C--Ccee--
Confidence 589999999999984 56766543 35899999887 3333220 00 0 0 0111
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (275)
.|.+++ ..+.++|+|+-||....-.+.+.+.+++|. -|++--|
T Consensus 54 ~~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP 96 (346)
T PRK11579 54 SEPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAGK-HVVVDKP 96 (346)
T ss_pred CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCC
Confidence 123322 112378999999999999999999999985 4776555
No 61
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.26 E-value=0.012 Score=46.46 Aligned_cols=95 Identities=29% Similarity=0.369 Sum_probs=65.2
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
+||+|+|+|.+|+..++.+... .+.+++++|-|+ +.+......+ .+ ... ++ .+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~-~~~~~v~~v~d~-~~~~~~~~~~---~~---~~~-----------------~~--~~ 53 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS-SPDFEVVAVCDP-DPERAEAFAE---KY---GIP-----------------VY--TD 53 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT-TTTEEEEEEECS-SHHHHHHHHH---HT---TSE-----------------EE--SS
T ss_pred CEEEEECCcHHHHHHHHHHHhc-CCCcEEEEEEeC-CHHHHHHHHH---Hh---ccc-----------------ch--hH
Confidence 5899999999999999988875 246899999988 3333322211 01 001 11 12
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~ 210 (275)
.+++ ..+.++|+|+-+|....-.+.+...+++|. .|++--|-
T Consensus 54 ~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 54 LEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp HHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 2222 122378999999999998899999999998 57777663
No 62
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.18 E-value=0.0016 Score=52.20 Aligned_cols=87 Identities=28% Similarity=0.397 Sum_probs=48.3
Q ss_pred CCChhHHHHHHHHHhCCCC-CceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCCCC-C
Q 023894 93 GFGRIGRNFLRCWHGRKDS-PLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQ-L 170 (275)
Q Consensus 93 GfGrIGR~vlR~l~er~~~-~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~dP~~-i 170 (275)
|||.||+.+++.|.++... ++++++|-+.. . ++..+. ...+. +.. +. .+.++ +
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~--~----~~~~~~-~~~~~--------~~~--------~~--~~~~~~~ 55 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS--M----LISKDW-AASFP--------DEA--------FT--TDLEELI 55 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS--E----EEETTH-HHHHT--------HSC--------EE--SSHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC--c----hhhhhh-hhhcc--------ccc--------cc--CCHHHHh
Confidence 8999999999999876422 58888887662 0 111000 00000 000 00 11211 1
Q ss_pred CcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 023894 171 PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (275)
Q Consensus 171 ~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISA 208 (275)
.|. .+|+|||||+...-.+.....|+.|. -|||+
T Consensus 56 ~~~--~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 56 DDP--DIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp THT--T-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred cCc--CCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 221 68999999998777777888888888 46665
No 63
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.99 E-value=0.011 Score=48.54 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=28.6
Q ss_pred eeEEEECC-ChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 87 ~kVaInGf-GrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
|||+|+|+ ||+||.+++.+.+++ .++++++-+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~--~~~lv~~v~~ 34 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESP--GFELVGAVDR 34 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHST--TEEEEEEEET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC--CcEEEEEEec
Confidence 68999997 999999999998854 4899888776
No 64
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.94 E-value=0.015 Score=52.61 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=65.4
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
...||.|+|-|.+||.++.--+.. ...++++++=|. +++. -|++-+. +.|..-
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~-~~~~~iv~~FDv-~~~~----------VG~~~~~---------------v~V~~~ 135 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSK-KNGMKIVAAFDV-DPDK----------VGTKIGD---------------VPVYDL 135 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchh-hcCceEEEEecC-CHHH----------hCcccCC---------------eeeech
Confidence 447999999999999988654432 245888888666 2221 2332222 334332
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~ 210 (275)
.+.+.+ -.+.++|++|-|.......+-+..-.++|.|.++==+|.
T Consensus 136 d~le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv 180 (211)
T COG2344 136 DDLEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPV 180 (211)
T ss_pred HHHHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccce
Confidence 333322 123489999999999999999999999999876545665
No 65
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.87 E-value=0.1 Score=47.39 Aligned_cols=34 Identities=44% Similarity=0.639 Sum_probs=29.9
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
+.++|+|.|||.||+.+++.|.++. .++|+|.|.
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~g---~~vv~v~D~ 63 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEAG---AKVVAVSDS 63 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECC
Confidence 4579999999999999999998763 799999886
No 66
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.60 E-value=0.061 Score=50.60 Aligned_cols=96 Identities=24% Similarity=0.304 Sum_probs=53.9
Q ss_pred eeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 86 ~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
++||+|+| .||.||.+.|++.+.+ .+++++.-+..+. ...|.-.+.+- -++-..+.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~--~~~L~aa~~~~~~----------~~~g~d~ge~~-------g~~~~gv~v~-- 60 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAP--DLELVAAFDRPGS----------LSLGSDAGELA-------GLGLLGVPVT-- 60 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCC--CceEEEEEecCCc----------cccccchhhhc-------cccccCceee--
Confidence 57999999 6999999999998754 4777766554111 01111111110 0111112222
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVII 206 (275)
.++. -.....|++||=|-...+.+.+...++.|.+ .||
T Consensus 61 ~~~~---~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~-lVI 98 (266)
T COG0289 61 DDLL---LVKADADVLIDFTTPEATLENLEFALEHGKP-LVI 98 (266)
T ss_pred cchh---hcccCCCEEEECCCchhhHHHHHHHHHcCCC-eEE
Confidence 2221 1223678888877777777777777777754 445
No 67
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.28 E-value=0.21 Score=45.20 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=29.8
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
+.++|+|-|||.+|+.+++.|.++. ..+|+|.|.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G---~~vV~vsD~ 55 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG---GKVLAVSDP 55 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC---CEEEEEEcC
Confidence 4479999999999999999998863 588999987
No 68
>PLN02700 homoserine dehydrogenase family protein
Probab=95.23 E-value=0.043 Score=53.83 Aligned_cols=38 Identities=34% Similarity=0.482 Sum_probs=29.6
Q ss_pred cceeeEEEECCChhHHHHHHHHHhCC------CCCceEEEEcCC
Q 023894 84 VAKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (275)
Q Consensus 84 ~~~~kVaInGfGrIGR~vlR~l~er~------~~~l~iVaInd~ 121 (275)
|+.++|+|.|||.||+.+++.+.++. +-++++++|.+.
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s 44 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS 44 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence 35689999999999999999876542 224788888764
No 69
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.58 E-value=0.37 Score=44.99 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=36.7
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC---------CChhhhhhhccccc
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDS 135 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~---------~~~~~~a~LLkyDS 135 (275)
+..+|+|-|||.+|+.+++.|.+.. .++|+|.|. .|++.+..|++++.
T Consensus 37 ~g~~vaIqGfGnVG~~~a~~L~e~G---akvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~ 93 (254)
T cd05313 37 KGKRVAISGSGNVAQYAAEKLLELG---AKVVTLSDSKGYVYDPDGFTGEKLAELKEIKE 93 (254)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCceEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998864 699999884 25555555555554
No 70
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.50 E-value=0.057 Score=46.64 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=27.0
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
..+|+|+|||+||+.+++.+.... ++|++.+..
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~~ 68 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFG---MRVIGYDRS 68 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT----EEEEEESS
T ss_pred CCEEEEEEEcCCcCeEeeeeecCC---ceeEEeccc
Confidence 468999999999999999997643 688888765
No 71
>PRK09414 glutamate dehydrogenase; Provisional
Probab=94.48 E-value=0.13 Score=51.47 Aligned_cols=102 Identities=20% Similarity=0.267 Sum_probs=60.6
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-------CChhhhhhhccccccc-cccCceEEEecCCeEEECC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-------GGVKNASHLLKYDSLL-GTFKADVKIVDNETISVDG 156 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-------~~~~~~a~LLkyDS~h-G~f~~~v~~~e~~~l~inG 156 (275)
+..+|+|-|||.+|+.+++.|.+.. .+||+|.|. ..++ ...|++|--.+ |...+- .+.. |
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~G---akVVavsDs~G~iyn~~GLD-~~~L~~~k~~~~~~l~~~----~~~~----~ 298 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQLG---AKVVTCSDSSGYVYDEEGID-LEKLKEIKEVRRGRISEY----AEEF----G 298 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCCC-HHHHHHHHHhcCCchhhh----hhhc----C
Confidence 4479999999999999999998754 799999883 1122 22344432211 111100 0000 1
Q ss_pred eEEEEEecCCCCCCCcccccccEEEcCC-CCCCChhhHHHHHHcCCCEEEE
Q 023894 157 KLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVII 206 (275)
Q Consensus 157 k~I~V~~~~dP~~i~w~~~giDiVie~T-G~f~~~e~a~~Hl~aGakkVII 206 (275)
.+.+ +++++ |. ..+|+.|.|+ +.-++.+.+.++.+.+|| +|+
T Consensus 299 --~~~i---~~~~i-~~-~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 299 --AEYL---EGGSP-WS-VPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred --Ceec---CCccc-cc-cCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 0111 23332 43 4789999886 556677778888777775 555
No 72
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=94.45 E-value=0.14 Score=50.40 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=64.1
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhcc-ccccccccCceEEEecCC---eEE--ECCeEE
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK-YDSLLGTFKADVKIVDNE---TIS--VDGKLI 159 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLk-yDS~hG~f~~~v~~~e~~---~l~--inGk~I 159 (275)
.+|+|.| +|-||+.-++.+...+ .+++++++.-..+.+.+..+.+ |... -+-+.++. .+. ..+..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p-~~f~VvaLaa~~n~~~l~~q~~~f~p~------~v~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNP-DRFRVVALSAGKNVELLAEQAREFRPK------YVVVADEEAAKELKEALAAAGI 74 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCc-cccEEEEEEcCCCHHHHHHHHHHhCCC------EEEEcCHHHHHHHHHhhccCCc
Confidence 4899999 9999999999886433 3689999974335555544432 2211 11111100 000 112123
Q ss_pred EEEecCC-CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 023894 160 KVVSNRD-PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (275)
Q Consensus 160 ~V~~~~d-P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVII 206 (275)
++....+ ..++ -...++|+|+.+++.+...+-.-..+++|. +|.+
T Consensus 75 ~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK-~VaL 120 (385)
T PRK05447 75 EVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAGK-RIAL 120 (385)
T ss_pred eEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCCC-cEEE
Confidence 3443221 1111 111268999999999988887778888884 4555
No 73
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=94.29 E-value=0.035 Score=59.24 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=29.5
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCC-------CCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~-------~~~l~iVaInd~ 121 (275)
+.++|+|.|||.||+.++|.|.++. +-++++++|-+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s 500 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS 500 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence 5689999999999999999987653 235778888654
No 74
>PLN02477 glutamate dehydrogenase
Probab=94.28 E-value=0.44 Score=47.31 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=29.6
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
+..+|+|-|||.+|+.+++.|.++. ..||+|.|.
T Consensus 205 ~g~~VaIqGfGnVG~~~A~~L~e~G---akVVaVsD~ 238 (410)
T PLN02477 205 AGQTFVIQGFGNVGSWAAQLIHEKG---GKIVAVSDI 238 (410)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC---CEEEEEECC
Confidence 3468999999999999999998764 699999886
No 75
>PRK10206 putative oxidoreductase; Provisional
Probab=94.20 E-value=0.096 Score=49.89 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=58.9
Q ss_pred eeeEEEECCChhHH-HHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 86 KLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 86 ~~kVaInGfGrIGR-~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
++||||+|+|+|++ ..++.+... .+.+++++|-|.. .+.. ...+ .| . + ++++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~-~~~~~l~av~d~~-~~~~-~~~~---~~---~--------------~--~~~~-- 53 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNR-KDSWHVAHIFRRH-AKPE-EQAP---IY---S--------------H--IHFT-- 53 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcC-CCCEEEEEEEcCC-hhHH-HHHH---hc---C--------------C--Cccc--
Confidence 37999999999885 345655432 2358999999872 2222 1111 01 0 0 0111
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (275)
.|.+++ ..+.++|+|+-||....-.+.+.+.+++| |-|++--|
T Consensus 54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKP 96 (344)
T PRK10206 54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKP 96 (344)
T ss_pred CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecC
Confidence 122222 12337899999999999999999999998 45777555
No 76
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.06 E-value=0.15 Score=47.30 Aligned_cols=108 Identities=19% Similarity=0.107 Sum_probs=61.0
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCC------C--CCceEEEEcCC-CChhhhhhhccccccccccCceEEEecCCeEEEC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRK------D--SPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVD 155 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~------~--~~l~iVaInd~-~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~in 155 (275)
++.||.|+|.|-+|-.+++.|.... + ..++++.+..- .+...+-.-+=+++.-|+.+.++-.. .--.++
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~--ri~~~~ 87 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVN--RLNQAM 87 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHH--HHHhcc
Confidence 4579999999999999999987431 1 12455555432 22222222222345567766554421 111123
Q ss_pred CeEEEEEecC-CCCCCCcccccccEEEcCCCCCCChhhHHHHH
Q 023894 156 GKLIKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI 197 (275)
Q Consensus 156 Gk~I~V~~~~-dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl 197 (275)
+..++....+ +++++ + .+.|+||+|+..+..+......+
T Consensus 88 ~~~i~a~~~~~~~~~~-~--~~~DiVi~avDn~~aR~~l~~~~ 127 (244)
T TIGR03736 88 GTDWTAHPERVERSST-L--HRPDIVIGCVDNRAARLAILRAF 127 (244)
T ss_pred CceEEEEEeeeCchhh-h--cCCCEEEECCCCHHHHHHHHHHH
Confidence 4444444322 22222 2 36899999999998886665444
No 77
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.02 E-value=0.19 Score=46.40 Aligned_cols=97 Identities=26% Similarity=0.282 Sum_probs=60.9
Q ss_pred ceeeEEEECCChhHH-HHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 023894 85 AKLKVAINGFGRIGR-NFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (275)
Q Consensus 85 ~~~kVaInGfGrIGR-~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~ 163 (275)
+++||||+|.|.|+. ..++.+...... +++++|-|+ +.+.+..+- ..+|. . +.+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~d~-~~~~a~~~a---~~~~~---~----------------~~~- 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVVDR-DPERAEAFA---EEFGI---A----------------KAY- 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCc-eEEEEEecC-CHHHHHHHH---HHcCC---C----------------ccc-
Confidence 578999999997775 577777654321 799999887 444333222 11111 0 011
Q ss_pred cCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 023894 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (275)
Q Consensus 164 ~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (275)
.+.+++ -.+..+|+|+-||....-.+.+.+.|++|. -|++--|
T Consensus 57 -~~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKP 99 (342)
T COG0673 57 -TDLEEL-LADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKP 99 (342)
T ss_pred -CCHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCC
Confidence 112221 011258999999999999999999999997 3666444
No 78
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.91 E-value=0.11 Score=51.05 Aligned_cols=92 Identities=26% Similarity=0.365 Sum_probs=52.0
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhccccccccccCceEEEecC----CeEEECCeEE
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDN----ETISVDGKLI 159 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a~LLkyDS~hG~f~~~v~~~e~----~~l~inGk~I 159 (275)
+|+|||++|-|..|+-++...... +.+++|+|.|. .+-.+.| ||-.++.-...+..++- ..|. .| +|
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m--~Gm~vvaisd~~~~~ak~A----~~~ag~~~~~~~e~~~~s~~a~Ai~-aG-Ki 87 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASM--PGMEVVAISDRNLDAAKRA----YDRAGGPKIEAVEADDASKMADAIE-AG-KI 87 (438)
T ss_pred CceEEEEecccccchHHHHHHhhc--CCceEEEEecccchHHHHH----HHHhcCCcccccccchhhHHHHHHh-cC-cE
Confidence 679999999999999888665533 45999999998 2333333 45444332111111100 0010 12 22
Q ss_pred EEEecCCCCCCCcccccccEEEcCCCCC
Q 023894 160 KVVSNRDPLQLPWAELGIDIVIEGTGVF 187 (275)
Q Consensus 160 ~V~~~~dP~~i~w~~~giDiVie~TG~f 187 (275)
.+. +|-+.+ .....||++||+||.-
T Consensus 88 ~vT--~D~~~i-~~~~~IdvIIdATG~p 112 (438)
T COG4091 88 AVT--DDAELI-IANDLIDVIIDATGVP 112 (438)
T ss_pred EEe--cchhhh-hcCCcceEEEEcCCCc
Confidence 232 122222 2334799999999974
No 79
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=93.72 E-value=0.056 Score=57.66 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=29.0
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCC------CCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~------~~~l~iVaInd~ 121 (275)
+.++|+|.|||.||+.+++.|.++. +-++++++|-+.
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s 506 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS 506 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 5689999999999999999987542 234777777653
No 80
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=93.66 E-value=0.086 Score=46.88 Aligned_cols=96 Identities=22% Similarity=0.232 Sum_probs=58.2
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
..+|+|+|.|.+|+.+++.+.. ....++++++-|. +++... .. ++|.+ +....
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~-~~~g~~ivgv~D~-d~~~~~---------------------~~--i~g~~--v~~~~ 136 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGF-EKRGFKIVAAFDV-DPEKIG---------------------TK--IGGIP--VYHID 136 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhc-ccCCcEEEEEEEC-ChhhcC---------------------CE--eCCeE--EcCHH
Confidence 3689999999999999986432 2245888887665 221111 00 12322 21112
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (275)
+..++ ..+.++|+|+.|++.....+-...-+++|.+.|+.-.|
T Consensus 137 ~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 137 ELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 22222 23457999999999877666666777789876554445
No 81
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.17 E-value=0.21 Score=45.18 Aligned_cols=98 Identities=22% Similarity=0.258 Sum_probs=55.9
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhcc--ccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK--YDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLk--yDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
|++.|+|.||+|+.++|.|.++. -+++.|.+- .+.....++ +|. ..+..++....+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g---~~Vv~Id~d--~~~~~~~~~~~~~~--------------~~v~gd~t~~~~L~- 60 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG---HNVVLIDRD--EERVEEFLADELDT--------------HVVIGDATDEDVLE- 60 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC---CceEEEEcC--HHHHHHHhhhhcce--------------EEEEecCCCHHHHH-
Confidence 47999999999999999998764 366666543 222221111 111 11222222222221
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhH-HHHHH-cCCCEEEEeCCC
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGA-GKHIQ-AGAKKVIITAPA 210 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a-~~Hl~-aGakkVIISAP~ 210 (275)
+.. -...|+++=+||.....--+ ..+++ -|.++||..+..
T Consensus 61 ----~ag--i~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~ 102 (225)
T COG0569 61 ----EAG--IDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARN 102 (225)
T ss_pred ----hcC--CCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 111 12567999999985444333 33444 599998887764
No 82
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=92.65 E-value=0.23 Score=37.83 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=30.5
Q ss_pred eEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhc
Q 023894 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LL 131 (275)
||+|.|+|++|..+++-|.+....+-++..+.+. +.+.+.++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-SPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-SHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-cHHHHHHHH
Confidence 7999999999999999998764333566655444 455555543
No 83
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=92.63 E-value=0.16 Score=48.14 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=26.3
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
...+|||+|||+|||.+++.+... .++|++.+.
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~f---gm~V~~~d~ 176 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAF---GAKVVYYST 176 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhc---CCEEEEECC
Confidence 346899999999999999988643 268877764
No 84
>PLN02775 Probable dihydrodipicolinate reductase
Probab=92.60 E-value=0.42 Score=45.47 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=28.5
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
+.+||+||| .||.|+.+.+.+.. + ++++|+.-|.
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~-~--~~~Lv~~~~~ 44 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVS-A--GLQLVPVSFT 44 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhc-C--CCEEEEEecc
Confidence 457999999 99999999999876 3 4899887665
No 85
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=92.57 E-value=0.94 Score=45.69 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=64.1
Q ss_pred eeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhcc-ccccccccCceEEEecC-------CeEEECC
Q 023894 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLK-YDSLLGTFKADVKIVDN-------ETISVDG 156 (275)
Q Consensus 86 ~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLk-yDS~hG~f~~~v~~~e~-------~~l~inG 156 (275)
+.||+|.| +|-||.+.++++.+.. .+++++++.-..+.+.++...+ |... -+.+.+. ..+ +|
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~p-d~f~vvaLaag~Ni~lL~~q~~~f~p~------~v~v~d~~~~~~l~~~l--~~ 127 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENP-DKFKVVALAAGSNVTLLADQVRKFKPK------LVAVRNESLVDELKEAL--AD 127 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCc-cccEEEEEECCCCHHHHHHHHHHhCCC------EEEEcCHHHHHHHHHhh--cC
Confidence 46899999 8999999999887653 4689988877666666655332 2111 1111000 001 11
Q ss_pred e--EEEEEecC-CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 023894 157 K--LIKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (275)
Q Consensus 157 k--~I~V~~~~-dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVII 206 (275)
. .++++... +..++ -....+|+|+.+.+.+....-.-..+++| |+|.+
T Consensus 128 ~~~~~~vl~G~egl~~l-a~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VAL 178 (454)
T PLN02696 128 LDDKPEIIPGEEGIVEV-ARHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIAL 178 (454)
T ss_pred CCCCcEEEECHHHHHHH-HcCCCCCEEEEeCccccchHHHHHHHHCC-CcEEE
Confidence 0 13343311 11111 01126899999998887776666778888 44544
No 86
>PRK14030 glutamate dehydrogenase; Provisional
Probab=92.37 E-value=1.2 Score=44.86 Aligned_cols=125 Identities=18% Similarity=0.194 Sum_probs=71.1
Q ss_pred CCcCHHHHHHhhccccccCCCCCccccccceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC---------CChhh
Q 023894 56 RDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKN 126 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~---------~~~~~ 126 (275)
++..+.-+++.-+... +. . .+..+|+|-|||.+|..+++.|.+.. ..+|+|.|. .|++.
T Consensus 207 Tg~Gv~~~~~~~~~~~-g~---~-----l~g~~vaIQGfGnVG~~aA~~L~e~G---akvVavSD~~G~i~d~~Gld~~~ 274 (445)
T PRK14030 207 TGFGALYFVHQMLETK-GI---D-----IKGKTVAISGFGNVAWGAATKATELG---AKVVTISGPDGYIYDPDGISGEK 274 (445)
T ss_pred cHHHHHHHHHHHHHHc-CC---C-----cCCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCCCHHH
Confidence 4455666666555432 11 1 13468999999999999999998764 588997664 24555
Q ss_pred hhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCCCCCCcccccccEEEcC-CCCCCChhhHHHHHHcCCCEEE
Q 023894 127 ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEG-TGVFVDGPGAGKHIQAGAKKVI 205 (275)
Q Consensus 127 ~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~dP~~i~w~~~giDiVie~-TG~f~~~e~a~~Hl~aGakkVI 205 (275)
+.+|++|-..+|..-.... + .+.| .+.+ +++++ |. ..+|+.+=| ++.-++.+.+.+-.+.+|| +|
T Consensus 275 l~~l~~~k~~~~~~~~~~~--~----~~~g--a~~i---~~~~~-~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak-~V 340 (445)
T PRK14030 275 IDYMLELRASGNDIVAPYA--E----KFPG--STFF---AGKKP-WE-QKVDIALPCATQNELNGEDADKLIKNGVL-CV 340 (445)
T ss_pred HHHHHHHHHhcCccHHHHH--h----cCCC--CEEc---CCccc-ee-ccccEEeeccccccCCHHHHHHHHHcCCe-EE
Confidence 6677766443332100000 0 0111 1111 22222 53 467866654 5677777777776666775 44
Q ss_pred E
Q 023894 206 I 206 (275)
Q Consensus 206 I 206 (275)
+
T Consensus 341 ~ 341 (445)
T PRK14030 341 A 341 (445)
T ss_pred E
Confidence 4
No 87
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.36 E-value=0.29 Score=45.26 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=24.5
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
|||.|-| +|.||+.+++.|.++. .+++++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~ 31 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLV 31 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEE
Confidence 4799999 9999999999998764 4666554
No 88
>PRK06487 glycerate dehydrogenase; Provisional
Probab=92.08 E-value=0.2 Score=47.56 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=26.4
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
..+|||+|||+|||.++|.+... .+++++.+..
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~f---gm~V~~~~~~ 180 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAF---GMRVLIGQLP 180 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC---CCEEEEECCC
Confidence 46899999999999999998643 2688777643
No 89
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=91.85 E-value=0.2 Score=43.93 Aligned_cols=96 Identities=21% Similarity=0.257 Sum_probs=52.3
Q ss_pred EEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCC
Q 023894 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (275)
Q Consensus 89 VaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~dP 167 (275)
|+|.| +|.+|+.+++.|.... .++.++-...+ +..+.-|+. .|. + + + .....|+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~---~~V~~l~R~~~-~~~~~~l~~---~g~---~--------v------v-~~d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG---FSVRALVRDPS-SDRAQQLQA---LGA---E--------V------V-EADYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---GCEEEEESSSH-HHHHHHHHH---TTT---E--------E------E-ES-TT-H
T ss_pred CEEECCccHHHHHHHHHHHhCC---CCcEEEEeccc-hhhhhhhhc---ccc---e--------E------e-ecccCCH
Confidence 68999 9999999999999843 56666443311 111111211 010 0 0 0 0011244
Q ss_pred CCCCcccccccEEEcCCCCCCChh------hHHHHHHcCCCEEEEeCC
Q 023894 168 LQLPWAELGIDIVIEGTGVFVDGP------GAGKHIQAGAKKVIITAP 209 (275)
Q Consensus 168 ~~i~w~~~giDiVie~TG~f~~~e------~a~~Hl~aGakkVIISAP 209 (275)
+.+.=.-.|+|.||.+++.+...+ -+....++|+|++|.|..
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 443322348999999999774322 223445679999887543
No 90
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=91.67 E-value=0.93 Score=45.72 Aligned_cols=125 Identities=18% Similarity=0.209 Sum_probs=72.6
Q ss_pred cCCcCHHHHHHhhccccccCCCCCccccccceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCC---------Chh
Q 023894 55 ARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG---------GVK 125 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~---------~~~ 125 (275)
.++-.+.-+++.-+... + .. -+..+|+|-|||.+|...++.|.+.. -.+|+|.|.. |.+
T Consensus 215 ATG~Gv~~~~~~~l~~~-~---~~-----l~Gk~VaVqG~GnVg~~aa~~L~e~G---akVVavSD~~G~iy~~~Gld~~ 282 (454)
T PTZ00079 215 ATGYGLVYFVLEVLKKL-N---DS-----LEGKTVVVSGSGNVAQYAVEKLLQLG---AKVLTMSDSDGYIHEPNGFTKE 282 (454)
T ss_pred ccHHHHHHHHHHHHHHc-C---CC-----cCCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCCcEECCCCCCHH
Confidence 34455666666655432 1 11 13468999999999999999998864 5899999872 355
Q ss_pred hhhhhccccccc-cccCceEEEecCCeEEECCeEEEEEecCCCCCCCcccccccEEEcC-CCCCCChhhHHHHHHcCCCE
Q 023894 126 NASHLLKYDSLL-GTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEG-TGVFVDGPGAGKHIQAGAKK 203 (275)
Q Consensus 126 ~~a~LLkyDS~h-G~f~~~v~~~e~~~l~inGk~I~V~~~~dP~~i~w~~~giDiVie~-TG~f~~~e~a~~Hl~aGakk 203 (275)
.+.+|+++-..+ |....- .+. .-| .+.+ ++++ .|. ..+|+.+=| ++..++.+.+..-++.|||
T Consensus 283 ~l~~l~~~k~~~~g~i~~~----~~~---~~~--a~~~---~~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak- 347 (454)
T PTZ00079 283 KLAYLMDLKNVKRGRLKEY----AKH---SST--AKYV---PGKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCK- 347 (454)
T ss_pred HHHHHHHHHhhcCCcHHhh----hhc---cCC--cEEe---CCcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCe-
Confidence 555555432221 211100 000 001 1111 1222 264 578877765 6777788888877678886
Q ss_pred EEE
Q 023894 204 VII 206 (275)
Q Consensus 204 VII 206 (275)
+|+
T Consensus 348 ~V~ 350 (454)
T PTZ00079 348 LVA 350 (454)
T ss_pred EEE
Confidence 444
No 91
>PRK06932 glycerate dehydrogenase; Provisional
Probab=91.50 E-value=0.25 Score=46.90 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=25.4
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
..+|||+|||+|||.+++.+... .+++++.+.
T Consensus 147 gktvgIiG~G~IG~~va~~l~~f---g~~V~~~~~ 178 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQAL---GMKVLYAEH 178 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC---CCEEEEECC
Confidence 46899999999999999988543 267777653
No 92
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=91.03 E-value=0.3 Score=46.81 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=58.4
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChh--hhhhhccccccccccCceEEEecCCeEE----ECCeEE
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK--NASHLLKYDSLLGTFKADVKIVDNETIS----VDGKLI 159 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~--~~a~LLkyDS~hG~f~~~v~~~e~~~l~----inGk~I 159 (275)
..+|||+|||+||+.+++.+.... +++++.+--...+ ..-.....|+-..-+. +-+-|+ ..-...
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afg---m~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~------~sDiv~lh~PlT~eT~ 212 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFG---MKVIGYDPYSPRERAGVDGVVGVDSLDELLA------EADILTLHLPLTPETR 212 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEECCCCchhhhccccceecccHHHHHh------hCCEEEEcCCCCcchh
Confidence 468999999999999998886543 6877765511111 0000111121111111 112221 122233
Q ss_pred EEEecCCCCCCCcccccccEEEcCC-CCCCChhhHHHHHHcCC-CEEEEeCCC
Q 023894 160 KVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGA-KKVIITAPA 210 (275)
Q Consensus 160 ~V~~~~dP~~i~w~~~giDiVie~T-G~f~~~e~a~~Hl~aGa-kkVIISAP~ 210 (275)
.++.+...+.++ .|. +.|.|. |.-++.+.+-..|+.|- ....++-..
T Consensus 213 g~i~~~~~a~MK---~ga-ilIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~ 261 (324)
T COG0111 213 GLINAEELAKMK---PGA-ILINAARGGVVDEDALLAALDSGKIAGAALDVFE 261 (324)
T ss_pred cccCHHHHhhCC---CCe-EEEECCCcceecHHHHHHHHHcCCcceEEecCCC
Confidence 344333333332 355 666554 77788888889999874 224555443
No 93
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=90.83 E-value=0.17 Score=42.26 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=24.4
Q ss_pred EEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 89 VaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
|.|.| +|.+|+.+++.|.++. .+++++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEecC
Confidence 67899 9999999999999875 577666543
No 94
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=90.77 E-value=1.2 Score=41.63 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=24.9
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
|++||+|+|.|.||..++..|.+.. .++..++
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G---~~V~~~~ 32 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAG---ADVTLIG 32 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcC---CcEEEEe
Confidence 3468999999999999999997653 3555554
No 95
>PLN02928 oxidoreductase family protein
Probab=90.67 E-value=0.34 Score=46.67 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=26.8
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
..+|+|+|||+||+.+++.|.... ++|++.+..
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG---~~V~~~dr~ 191 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFG---VKLLATRRS 191 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCC---CEEEEECCC
Confidence 468999999999999999986543 688877643
No 96
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=90.66 E-value=2 Score=44.52 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=23.9
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
+...|.|-| .|.||+.+++.|.++. .+|+++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G---~~Vval 110 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLG---FRVRAG 110 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CeEEEE
Confidence 345699999 8999999999998764 465544
No 97
>PRK07574 formate dehydrogenase; Provisional
Probab=90.45 E-value=0.36 Score=47.44 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=26.2
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
.++|+|+|+|+||+.++|.|.... +++.+.+..
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~fG---~~V~~~dr~ 224 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPFD---VKLHYTDRH 224 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEECCC
Confidence 368999999999999999986532 677777643
No 98
>PRK06436 glycerate dehydrogenase; Provisional
Probab=90.31 E-value=0.39 Score=45.52 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=26.3
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
..+|+|.|+|+||+.+++.+... .+++++.+..
T Consensus 122 gktvgIiG~G~IG~~vA~~l~af---G~~V~~~~r~ 154 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAF---GMNIYAYTRS 154 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCEEEEECCC
Confidence 46899999999999999987543 2688877743
No 99
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=90.19 E-value=1.2 Score=40.59 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=24.9
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
|||||.| .|++|..++.-+..|. -++++|-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG---HeVTAiv 31 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG---HEVTAIV 31 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC---CeeEEEE
Confidence 5899999 9999999998888775 4666664
No 100
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=90.19 E-value=0.39 Score=45.86 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=24.4
Q ss_pred ceeeEEEECCChhHHHHHHHHH-hCCCCCceEEEEc
Q 023894 85 AKLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVN 119 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~-er~~~~l~iVaIn 119 (275)
...+|||+|||+|||.++|.+. .. .+++++.+
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~f---gm~V~~~~ 176 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGF---NMPILYNA 176 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcC---CCEEEEEC
Confidence 3468999999999999999875 32 26766543
No 101
>PRK13243 glyoxylate reductase; Reviewed
Probab=90.19 E-value=0.4 Score=45.80 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=26.3
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
...+|+|+|+|+||+.+++.|.... ++|++.+.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G---~~V~~~d~ 181 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFG---MRILYYSR 181 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 3468999999999999999987543 57776653
No 102
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.15 E-value=0.4 Score=47.21 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=25.3
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
..+|||+|||+||+.+++.+.... +++++.+
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fG---m~V~~~d 181 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLG---MRVYFYD 181 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEC
Confidence 468999999999999999987543 6777665
No 103
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=89.88 E-value=1.3 Score=42.99 Aligned_cols=81 Identities=23% Similarity=0.222 Sum_probs=53.6
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~ 163 (275)
+..+|-|-| .|-||.-+++.|++|. -.+. -.|+++.+.+...||.+.+. +++.++++.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG-Y~V~-gtVR~~~~~k~~~~L~~l~~-------------------a~~~l~l~~ 63 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG-YTVR-GTVRDPEDEKKTEHLRKLEG-------------------AKERLKLFK 63 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC-CEEE-EEEcCcchhhhHHHHHhccc-------------------CcccceEEe
Confidence 346899999 9999999999999875 2233 24778888888778877653 111233333
Q ss_pred c--CCCCCCCcccccccEEEcCCCC
Q 023894 164 N--RDPLQLPWAELGIDIVIEGTGV 186 (275)
Q Consensus 164 ~--~dP~~i~w~~~giDiVie~TG~ 186 (275)
. .|++.|+=.-.|+|+||-+.-.
T Consensus 64 aDL~d~~sf~~ai~gcdgVfH~Asp 88 (327)
T KOG1502|consen 64 ADLLDEGSFDKAIDGCDGVFHTASP 88 (327)
T ss_pred ccccccchHHHHHhCCCEEEEeCcc
Confidence 2 3566666556678888766444
No 104
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=89.54 E-value=0.58 Score=39.66 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=23.1
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
++|||++|+|+.|+.+++.|.... +++.+-|
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g---~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAG---YEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTT---TEEEEEE
T ss_pred CCEEEEEchHHHHHHHHHHHHhcC---CeEEeec
Confidence 368999999999999999998754 5766555
No 105
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=89.52 E-value=0.59 Score=44.89 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=25.2
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
...+|||.|+||||+.++|.+... .++|+.-+-
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~~F---gm~v~y~~~ 177 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLKGF---GMKVLYYDR 177 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcC---CCEEEEECC
Confidence 346899999999999999998642 267655543
No 106
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=89.51 E-value=1.2 Score=40.04 Aligned_cols=28 Identities=14% Similarity=0.347 Sum_probs=21.9
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
+|.|.| +|.||+.+++.|.++. .++.++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g---~~V~~~ 29 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS---VPFLVA 29 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC---CcEEEE
Confidence 478999 9999999999998764 354444
No 107
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=89.19 E-value=0.48 Score=45.32 Aligned_cols=95 Identities=31% Similarity=0.403 Sum_probs=51.9
Q ss_pred EEEECCChhHHHHHHHHHhCCCCCc-eEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCC
Q 023894 89 VAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDP 167 (275)
Q Consensus 89 VaInGfGrIGR~vlR~l~er~~~~l-~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~dP 167 (275)
|.|.|.|.+|+.+++.|.++.. + +++ |-|. +.+.+..+.+. .. ...++ .......|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~--~~~v~-va~r-~~~~~~~~~~~--~~---~~~~~-------------~~~~d~~~~ 58 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP--FEEVT-VADR-NPEKAERLAEK--LL---GDRVE-------------AVQVDVNDP 58 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC--E-EEE-EEES-SHHHHHHHHT----T---TTTEE-------------EEE--TTTH
T ss_pred CEEEcCcHHHHHHHHHHhcCCC--CCcEE-EEEC-CHHHHHHHHhh--cc---cccee-------------EEEEecCCH
Confidence 6899999999999999987642 3 443 4443 34444444320 00 00111 111112333
Q ss_pred CCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 023894 168 LQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (275)
Q Consensus 168 ~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIIS 207 (275)
+.+.=--.+.|+||.|.|.|....-+...++.|+ -.|+
T Consensus 59 ~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD 96 (386)
T PF03435_consen 59 ESLAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVD 96 (386)
T ss_dssp HHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEE
T ss_pred HHHHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceec
Confidence 3322112367999999999977777888888898 4565
No 108
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.07 E-value=1.1 Score=44.86 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=23.7
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|+|.|+|.||+.+++.+.... .++++++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~G---a~ViV~d 242 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLG---ARVIVTE 242 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 47999999999999999887653 4655553
No 109
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=89.07 E-value=0.56 Score=44.56 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=25.9
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
..+|+|+|+|.||+.+++.|.... +++.+.+.
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG---~~V~~~~~ 167 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWG---FPLRCWSR 167 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 368999999999999999987543 67777764
No 110
>PTZ00117 malate dehydrogenase; Provisional
Probab=88.81 E-value=2.6 Score=39.99 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=20.8
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~ 109 (275)
+..||+|.|-|.+|..++..+..+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~ 28 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKN 28 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCC
Confidence 4469999999999999998776543
No 111
>PLN02306 hydroxypyruvate reductase
Probab=88.50 E-value=0.61 Score=45.79 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=24.3
Q ss_pred eeeEEEECCChhHHHHHHHHH-hCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWH-GRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~-er~~~~l~iVaIn 119 (275)
..+|||+|||+||+.++|.+. .. .++|++.+
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~f---Gm~V~~~d 196 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGF---KMNLIYYD 196 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC---CCEEEEEC
Confidence 468999999999999999874 32 26777665
No 112
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=88.26 E-value=0.67 Score=45.54 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=35.2
Q ss_pred CCcCHHHHHHhhccccccCCCCCccccccceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 56 RDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
....+.+|+-..+-..... .+ ..-...+|||+|+|+||+.+++.+.... +++++.+
T Consensus 91 na~aVAE~~~~~lL~l~r~-~g----~~L~gktvGIIG~G~IG~~vA~~l~a~G---~~V~~~d 146 (378)
T PRK15438 91 NAIAVVEYVFSSLLMLAER-DG----FSLHDRTVGIVGVGNVGRRLQARLEALG---IKTLLCD 146 (378)
T ss_pred CchHHHHHHHHHHHHHhcc-CC----CCcCCCEEEEECcCHHHHHHHHHHHHCC---CEEEEEC
Confidence 3455667765544332111 01 1113468999999999999999987543 6877664
No 113
>PLN00016 RNA-binding protein; Provisional
Probab=88.23 E-value=1.6 Score=41.63 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=26.2
Q ss_pred ceeeEEEE----C-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 85 AKLKVAIN----G-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 85 ~~~kVaIn----G-fGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
+++||.|. | +|.||+.+++.|.++. .+|+++..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G---~~V~~l~R 88 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG---HEVTLFTR 88 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCC---CEEEEEec
Confidence 55789999 8 9999999999998753 46665543
No 114
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=88.22 E-value=0.99 Score=42.72 Aligned_cols=29 Identities=21% Similarity=0.503 Sum_probs=24.5
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
+||.||| .|++||.+.+++.. . .+++|+.
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~--~~~Lv~~ 30 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-A--GLEIVPT 30 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-C--CCEEEee
Confidence 4799999 99999999999765 3 4898875
No 115
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=88.10 E-value=0.71 Score=44.16 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=25.0
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.++|+|+|+|+||+.+++.|.... .+|++.+
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G---~~V~~~d 176 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFG---ATITAYD 176 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEEe
Confidence 358999999999999999987543 5776665
No 116
>PLN03139 formate dehydrogenase; Provisional
Probab=88.06 E-value=0.62 Score=45.84 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=25.4
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
...+|||+|+|+||+.+++.|... .+++++.+
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~af---G~~V~~~d 229 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPF---NCNLLYHD 229 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHC---CCEEEEEC
Confidence 346899999999999999998653 26776654
No 117
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.04 E-value=5.5 Score=37.17 Aligned_cols=141 Identities=16% Similarity=0.132 Sum_probs=69.0
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
-+|.|.|.|-||...+.++-... .+++++... .+.+.+. +++ ..|. +. + +-+.-.+.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G---~~vi~~~~~~~~~~~~~-~~~---~~Ga---~~-v--------~~~~~~~~--- 231 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRG---FEVYVLNRRDPPDPKAD-IVE---ELGA---TY-V--------NSSKTPVA--- 231 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEecCCCCHHHHH-HHH---HcCC---EE-e--------cCCccchh---
Confidence 47999999999999887765542 467666532 1233333 222 0121 11 1 10000000
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcchhh
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCMLIK 245 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTTn~ 245 (275)
+ .. .+ .++|+||||+|.-...+.+-..++.|-+=+++..+..+...++-...++...+..+ ..|+. .-.++..-
T Consensus 232 ~-~~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~-~~i~g-~~~~~~~~ 305 (355)
T cd08230 232 E-VK-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGN-KALVG-SVNANKRH 305 (355)
T ss_pred h-hh-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcC-cEEEE-ecCCchhh
Confidence 0 00 11 37899999999654445566677765532333333321111110011122233333 56766 55555555
Q ss_pred hHHHHHHhhh
Q 023894 246 MATLFHFISL 255 (275)
Q Consensus 246 LaPvlkvL~~ 255 (275)
+..+++.|.+
T Consensus 306 ~~~~~~~l~~ 315 (355)
T cd08230 306 FEQAVEDLAQ 315 (355)
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 118
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.64 E-value=3.1 Score=41.90 Aligned_cols=87 Identities=23% Similarity=0.216 Sum_probs=56.6
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhh-hhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~-~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~ 163 (275)
.+||.|.|+|+-|+.++|.|.++. .++. ++|. ...+. ..-.+.+ ..|.+..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G---~~v~-v~D~~~~~~~~~~~~~~~-----------------------~~i~~~~ 59 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG---AEVT-VSDDRPAPEGLAAQPLLL-----------------------EGIEVEL 59 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC---CeEE-EEcCCCCccchhhhhhhc-----------------------cCceeec
Confidence 468999999999999999998764 4544 4443 11110 0000000 1122322
Q ss_pred cCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 164 ~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
...+. .+|. ..|+||-+-|..-+.+...+..+.|++
T Consensus 60 g~~~~-~~~~--~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 60 GSHDD-EDLA--EFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred Cccch-hccc--cCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 23333 4554 789999999999999999999999995
No 119
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.61 E-value=0.86 Score=41.16 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=20.9
Q ss_pred ceeeEEEECCChhHHHHHHHHHhC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er 108 (275)
|++||+|+|+|.||..+++.|.+.
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~ 24 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLAS 24 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhC
Confidence 346899999999999999998764
No 120
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.52 E-value=1 Score=39.87 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=25.2
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
++|+|.|||++|+.+++.|.+.. .+++ +.|.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G---~~Vv-v~D~ 59 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEG---AKLI-VADI 59 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEE-EEcC
Confidence 58999999999999999998754 5777 4444
No 121
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=87.47 E-value=0.51 Score=39.53 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=26.2
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
..+||+|+|.||+|..|.++|.+.. .+|+.|-..
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag---~~v~~v~sr 42 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAG---HEVVGVYSR 42 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTT---SEEEEESSC
T ss_pred CccEEEEECCCHHHHHHHHHHHHCC---CeEEEEEeC
Confidence 4589999999999999999998754 577777544
No 122
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=87.39 E-value=0.65 Score=36.23 Aligned_cols=93 Identities=26% Similarity=0.267 Sum_probs=54.1
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
+.||+|+|.|+.|+.++...++.. .+.++++-|. ++ ++. + -.++| ++|+.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~--g~~i~~~~dv-~~-------------~~~--------G--~~i~g--ipV~~-- 52 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMR--GFGIVAVFDV-DP-------------EKI--------G--KEIGG--IPVYG-- 52 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHH--CECEEEEEEE-CT-------------TTT--------T--SEETT--EEEES--
T ss_pred CCeEEEECCCCcHHHHHHhHHHHc--CCCCEEEEEc-CC-------------Ccc--------C--cEECC--EEeec--
Confidence 468999999999998875444322 2555555433 11 110 1 11233 45541
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (275)
+.+++.=.- ++|+.+-+.+.....+.+...+++|.|-++.=+|
T Consensus 53 ~~~~l~~~~-~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 53 SMDELEEFI-EIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp SHHHHHHHC-TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred cHHHhhhhh-CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 111111000 3899999988877778888888999998876554
No 123
>PLN02256 arogenate dehydrogenase
Probab=86.94 E-value=1.4 Score=41.84 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=26.5
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
++++|+|+|+|.+|..+++.|.+.. .++++++..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G---~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQG---HTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECc
Confidence 4468999999999999999987542 577766544
No 124
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=86.34 E-value=1.9 Score=47.69 Aligned_cols=95 Identities=19% Similarity=0.151 Sum_probs=59.1
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCC----------CceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEEC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDS----------PLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVD 155 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~----------~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~in 155 (275)
+.||+|.|.|+||+..++.|.+..+. ...+|+|.|. +++.+..+.+ .++ +
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~-~~~~a~~la~------~~~-------------~ 628 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL-YLKDAKETVE------GIE-------------N 628 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC-CHHHHHHHHH------hcC-------------C
Confidence 56899999999999999999764321 1226778877 3333332221 000 0
Q ss_pred CeEEEEEecCCCCCCC-cccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 156 GKLIKVVSNRDPLQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 156 Gk~I~V~~~~dP~~i~-w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
-+.+.+- ..|++++. +- .++|+||-|++.+...+-+...+++|+-
T Consensus 629 ~~~v~lD-v~D~e~L~~~v-~~~DaVIsalP~~~H~~VAkaAieaGkH 674 (1042)
T PLN02819 629 AEAVQLD-VSDSESLLKYV-SQVDVVISLLPASCHAVVAKACIELKKH 674 (1042)
T ss_pred CceEEee-cCCHHHHHHhh-cCCCEEEECCCchhhHHHHHHHHHcCCC
Confidence 0112221 12343332 11 2689999999999998999999999873
No 125
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=86.33 E-value=3.5 Score=38.01 Aligned_cols=72 Identities=10% Similarity=0.031 Sum_probs=38.0
Q ss_pred ccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCc-ccCCCCCCeeeeeCCCcchhhhHHHHHHh
Q 023894 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE-KDYDHEVANIVRSVYSCMLIKMATLFHFI 253 (275)
Q Consensus 175 ~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~-~~~~~~~~~IIS~nASCTTn~LaPvlkvL 253 (275)
.++|+||||+|.-...+.+-..++.|.+=+++..+. + ++ .+|- ..+... .+++. ...++..-+.-+++.+
T Consensus 199 ~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~-~---~~---~~~~~~~~~~~-~~i~~-~~~~~~~~~~~~~~l~ 269 (308)
T TIGR01202 199 RDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYT-E---PV---NFDFVPAFMKE-ARLRI-AAEWQPGDLHAVRELI 269 (308)
T ss_pred CCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecC-C---Cc---ccccchhhhcc-eEEEE-ecccchhHHHHHHHHH
Confidence 378999999997555455556666665323233322 1 10 1221 122222 45665 4444555566667766
Q ss_pred hh
Q 023894 254 SL 255 (275)
Q Consensus 254 ~~ 255 (275)
.+
T Consensus 270 ~~ 271 (308)
T TIGR01202 270 ES 271 (308)
T ss_pred Hc
Confidence 54
No 126
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=86.27 E-value=1.4 Score=41.92 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=19.1
Q ss_pred eeEEEECCChhHHHHHHHHHhC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er 108 (275)
.||+|.|-|.+|..++..+..+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~ 28 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK 28 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 5899999999999998877654
No 127
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.27 E-value=1.3 Score=39.22 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=26.2
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCce-EEEEcCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDS 121 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~-iVaInd~ 121 (275)
.+||+|.|.|++|+.+++.|.......++ +++.++.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~ 40 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS 40 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence 47899999999999999988765322344 5556543
No 128
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.96 E-value=0.86 Score=41.68 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=50.7
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhh-hhccccccccccCceEEEecCCeEEECC-eEEEEEe
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNAS-HLLKYDSLLGTFKADVKIVDNETISVDG-KLIKVVS 163 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a-~LLkyDS~hG~f~~~v~~~e~~~l~inG-k~I~V~~ 163 (275)
.+|.|.|.|-+|-.+++.|....-. +++.|..- .++..+. +++...+.-|+...++.. +.-..+|- -.|..+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg--~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~--~~l~~inP~~~V~~~~ 87 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVG--KLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMA--ERIRDINPECEVDAVE 87 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCEECchhhcchhCcChhhCCCcHHHHHH--HHHHHHCCCcEEEEee
Confidence 5799999999999999999754322 33333322 2222222 222223555654433221 11111221 1222222
Q ss_pred cC-CCCCCC-cccccccEEEcCCCCCCChhhHH
Q 023894 164 NR-DPLQLP-WAELGIDIVIEGTGVFVDGPGAG 194 (275)
Q Consensus 164 ~~-dP~~i~-w~~~giDiVie~TG~f~~~e~a~ 194 (275)
.. ++++++ +-..+.|+||+|+..+..+..+.
T Consensus 88 ~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~ 120 (231)
T cd00755 88 EFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALI 120 (231)
T ss_pred eecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHH
Confidence 11 122211 11235899999998875554333
No 129
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=85.91 E-value=2.5 Score=34.32 Aligned_cols=82 Identities=20% Similarity=0.172 Sum_probs=52.8
Q ss_pred eEEEEC----CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 023894 88 KVAING----FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (275)
Q Consensus 88 kVaInG----fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~ 163 (275)
+|||+| -++.|+.+++.|.++. ++++.||-. ++.+ .|. +++
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G---~~v~~Vnp~-----------~~~i------------------~G~--~~y- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAG---YEVYPVNPK-----------GGEI------------------LGI--KCY- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT----EEEEESTT-----------CSEE------------------TTE--E-B-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCC---CEEEEECCC-----------ceEE------------------CcE--Eee-
Confidence 699999 5999999999998843 688888855 2221 221 121
Q ss_pred cCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 023894 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (275)
Q Consensus 164 ~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISA 208 (275)
.+.+++ ...+|+++-++..-...+......+.|++.|++..
T Consensus 47 -~sl~e~---p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~ 87 (116)
T PF13380_consen 47 -PSLAEI---PEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQP 87 (116)
T ss_dssp -SSGGGC---SST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-T
T ss_pred -ccccCC---CCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 122222 13689999999988888888888888999988854
No 130
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.53 E-value=2.6 Score=41.99 Aligned_cols=29 Identities=21% Similarity=0.517 Sum_probs=22.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEE
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
.+|+|.|+|.||+.+++.+.... .+++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~G---a~ViV~ 231 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQG---ARVIVT 231 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE
Confidence 47999999999999999886543 365554
No 131
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=85.09 E-value=1.2 Score=45.25 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=25.7
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
..+|+|+|||+||+.+++.|.... +++++.+.
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~ 169 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFG---MKVLAYDP 169 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 368999999999999999986532 67777754
No 132
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=85.09 E-value=1.3 Score=43.63 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=25.1
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
..+|||+|+|.||+.+++.+.... +++++.+
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G---~~V~~~D 146 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLG---WKVLVCD 146 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCC---CEEEEEC
Confidence 468999999999999999987543 6776654
No 133
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.98 E-value=0.94 Score=37.26 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=49.7
Q ss_pred eEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhccc-cccccccCceEEEecCCeEEEC-CeEEEEEec
Q 023894 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKY-DSLLGTFKADVKIVDNETISVD-GKLIKVVSN 164 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a~LLky-DS~hG~f~~~v~~~e~~~l~in-Gk~I~V~~~ 164 (275)
||.|.|.|.+|..+++.|...... ++..+.+- .+...+..-+-| .+.-|+...+.-. +.--.+| +-.+..+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~--~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~--~~l~~~~p~v~i~~~~~ 76 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVG--KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAA--RRLNELNPGVNVTAVPE 76 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC--EEEEEcCCCcCcchhhccccCChhHCCChHHHHHH--HHHHHHCCCcEEEEEee
Confidence 589999999999999998754322 33333322 233333322222 2223433222110 0000112 223333322
Q ss_pred C-CCCCCCcccccccEEEcCCCCCCChhhHHHH
Q 023894 165 R-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKH 196 (275)
Q Consensus 165 ~-dP~~i~w~~~giDiVie~TG~f~~~e~a~~H 196 (275)
. ++.+....-.+.|+||+|+..+..+......
T Consensus 77 ~~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~ 109 (143)
T cd01483 77 GISEDNLDDFLDGVDLVIDAIDNIAVRRALNRA 109 (143)
T ss_pred ecChhhHHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence 2 1111101113789999999987655544433
No 134
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.92 E-value=4.2 Score=37.87 Aligned_cols=158 Identities=14% Similarity=0.102 Sum_probs=75.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhh----hhhhccccccccccCceEEEecCCeEEECCeEEEE
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKN----ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKV 161 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~----~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V 161 (275)
.||||+|.|.+|+.++..+.... .+++..+-. ..++. +..+|..--..|.....-. +.. . ..|++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~---~~~--~--~~l~~ 75 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG---VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERER---DAA--L--ARLRF 75 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhH---HHH--H--hCeEe
Confidence 38999999999999998876542 576555432 11111 1111110011122111000 000 0 12333
Q ss_pred EecCCCCCCCcccccccEEEcCCCCCCChhhH-----HHHH-HcCCCEEEEeCCCC--------CCCCCe---EEeecCc
Q 023894 162 VSNRDPLQLPWAELGIDIVIEGTGVFVDGPGA-----GKHI-QAGAKKVIITAPAK--------GADIPT---YVVGVNE 224 (275)
Q Consensus 162 ~~~~dP~~i~w~~~giDiVie~TG~f~~~e~a-----~~Hl-~aGakkVIISAP~k--------~~DiP~---iV~GVN~ 224 (275)
. .+.+.+ .++|+||||...-...+.. .++. ..|+ ++.|..+- ....|- .+.=.|+
T Consensus 76 ~--~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf~~P 147 (286)
T PRK07819 76 T--TDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHFFNP 147 (286)
T ss_pred e--CCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEecCCC
Confidence 2 344333 3899999997654443322 2333 3344 77765431 011222 2233343
Q ss_pred ccCCCCCCeeeeeCCCcchhhhHHHHHHhhhhcCceEEEE
Q 023894 225 KDYDHEVANIVRSVYSCMLIKMATLFHFISLLTNLASAAM 264 (275)
Q Consensus 225 ~~~~~~~~~IIS~nASCTTn~LaPvlkvL~~~fgI~~v~v 264 (275)
--+.+- -.||. .+.+.-..+.-+...+.+..|-.=+.+
T Consensus 148 ~~~~~l-vElv~-~~~T~~~~~~~~~~~~~~~lgk~pv~v 185 (286)
T PRK07819 148 VPVLPL-VELVP-TLVTSEATVARAEEFASDVLGKQVVRA 185 (286)
T ss_pred cccCce-EEEeC-CCCCCHHHHHHHHHHHHHhCCCCceEe
Confidence 222232 45777 777666666666666565566544444
No 135
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=84.70 E-value=3.7 Score=34.36 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=45.1
Q ss_pred eeEEEECC-ChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGf-GrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
+||+|.|. |.||..++-.|..+.. -=|++-+....+ .+.=...|-.|..+.. +..+.+.. .
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l-~~ei~L~D~~~~---~~~g~a~Dl~~~~~~~-------------~~~~~i~~-~ 62 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL-ADEIVLIDINED---KAEGEALDLSHASAPL-------------PSPVRITS-G 62 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT-SSEEEEEESSHH---HHHHHHHHHHHHHHGS-------------TEEEEEEE-S
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCceEEeccCcc---cceeeehhhhhhhhhc-------------cccccccc-c
Confidence 58999998 9999999988876542 123433432200 1111113333332221 12233433 4
Q ss_pred CCCCCCcccccccEEEcCCCCCCC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVD 189 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~ 189 (275)
+.+.+. +.|+||-+.|.-+.
T Consensus 63 ~~~~~~----~aDivvitag~~~~ 82 (141)
T PF00056_consen 63 DYEALK----DADIVVITAGVPRK 82 (141)
T ss_dssp SGGGGT----TESEEEETTSTSSS
T ss_pred cccccc----cccEEEEecccccc
Confidence 555553 88999999998653
No 136
>PLN02214 cinnamoyl-CoA reductase
Probab=84.67 E-value=5.9 Score=37.21 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=24.0
Q ss_pred eeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 86 ~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
..+|.|-| .|.||+.+++.|.++. .+|+++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~ 40 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG---YTVKGT 40 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc---CEEEEE
Confidence 35799999 8999999999998764 465555
No 137
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.64 E-value=1.3 Score=45.06 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=25.9
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
..+|+|+|+|+||+.+++.+.... +++++.+.
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~ 171 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFG---MKVIAYDP 171 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 468999999999999999886542 68777764
No 138
>PRK14031 glutamate dehydrogenase; Provisional
Probab=84.49 E-value=3.9 Score=41.19 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=68.1
Q ss_pred cCCcCHHHHHHhhccccccCCCCCccccccceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC---------CChh
Q 023894 55 ARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVK 125 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~---------~~~~ 125 (275)
.++..+.-+++.-+... +. . -+..+|+|-|||.+|...++.|.+.. -+||+|.|. .|++
T Consensus 206 aTg~Gv~~~~~~~~~~~-g~---~-----l~g~rVaVQGfGNVG~~aA~~L~e~G---AkVVaVSD~~G~iy~~~Gld~~ 273 (444)
T PRK14031 206 ATGYGNIYFLMEMLKTK-GT---D-----LKGKVCLVSGSGNVAQYTAEKVLELG---GKVVTMSDSDGYIYDPDGIDRE 273 (444)
T ss_pred ccHHHHHHHHHHHHHhc-CC---C-----cCCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCCeEECCCCCCHH
Confidence 34445665666555432 11 1 13468999999999999999998854 589999883 2444
Q ss_pred hhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCCCCCCCcccccccEEEcC-CCCCCChhhHHHHHHcCCCEE
Q 023894 126 NASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEG-TGVFVDGPGAGKHIQAGAKKV 204 (275)
Q Consensus 126 ~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~dP~~i~w~~~giDiVie~-TG~f~~~e~a~~Hl~aGakkV 204 (275)
.+.|+.++... ..+.+.-..+. . | .++. ++++ .|. ..+|+.+=| ++.-++.+.+.+-...|++ +
T Consensus 274 ~l~~~~~~k~~---~~~~v~~~~~~---~-g--a~~i---~~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~~-~ 338 (444)
T PRK14031 274 KLDYIMELKNL---YRGRIREYAEK---Y-G--CKYV---EGAR-PWG-EKGDIALPSATQNELNGDDARQLVANGVI-A 338 (444)
T ss_pred HHHHHHHHHhh---cCCchhhhHhh---c-C--CEEc---CCcc-ccc-CCCcEEeecccccccCHHHHHHHHhcCCe-E
Confidence 44444332221 01111100000 0 1 1222 2222 253 468877765 4555677777765555773 4
Q ss_pred EEe
Q 023894 205 IIT 207 (275)
Q Consensus 205 IIS 207 (275)
|+.
T Consensus 339 V~E 341 (444)
T PRK14031 339 VSE 341 (444)
T ss_pred EEC
Confidence 443
No 139
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=84.32 E-value=1.5 Score=40.37 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=24.3
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+||+|+|+|.+|..+++.|.... .++++.+
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g---~~v~~~d 32 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAG---YSLVVYD 32 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCC---CeEEEEc
Confidence 468999999999999999887643 4665554
No 140
>PRK08605 D-lactate dehydrogenase; Validated
Probab=84.22 E-value=1.4 Score=42.00 Aligned_cols=32 Identities=38% Similarity=0.469 Sum_probs=24.2
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.++|+|+|+|+||+.+++.|.. .+ .+++++.+
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~-~~-g~~V~~~d 177 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAK-GY-GSDVVAYD 177 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-cC-CCEEEEEC
Confidence 4689999999999999998842 11 35776654
No 141
>PRK06223 malate dehydrogenase; Reviewed
Probab=83.79 E-value=5.9 Score=36.79 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=22.9
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEE
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
+||+|.|.|.+|..++..+..+.. . +++.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~-~-ev~L~ 32 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL-G-DVVLF 32 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-e-EEEEE
Confidence 699999999999999988875431 1 55544
No 142
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=83.46 E-value=1.5 Score=42.57 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=26.1
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
.+|+|+|+|+||+.+++.|.... +++++.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G---~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSG---VEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCc---CEEEEEECc
Confidence 57999999999999999997543 787776654
No 143
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=83.08 E-value=2.4 Score=33.14 Aligned_cols=30 Identities=40% Similarity=0.688 Sum_probs=23.2
Q ss_pred EEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 89 VaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
|.|.|+|++|+.+++.|.++. .+++.|...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~---~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG---IDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT---SEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhCC---CEEEEEECC
Confidence 679999999999999998743 577777643
No 144
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=82.91 E-value=8.2 Score=36.03 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.6
Q ss_pred ceeeEEEECCChhHHHHHHHHHhC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er 108 (275)
+++||+|+|.|.||..++..|.+.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~ 27 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA 27 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC
Confidence 446899999999999999888764
No 145
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.82 E-value=8.9 Score=37.78 Aligned_cols=87 Identities=25% Similarity=0.272 Sum_probs=49.6
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
.+|.|.|.|.+|..+++.|.++. .+++++... +.+....+.++=..+ | |++....+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G---~~V~~~d~~-~~~~~~~~~~~l~~~------------------g--v~~~~~~~ 72 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG---ARVTVVDDG-DDERHRALAAILEAL------------------G--ATVRLGPG 72 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCC-chhhhHHHHHHHHHc------------------C--CEEEECCC
Confidence 48999999999999999998764 465555422 221111111100001 1 11111112
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGa 201 (275)
+. . ..+.|+||.++|.--+.+.+....+.|.
T Consensus 73 ~~-~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi 103 (480)
T PRK01438 73 PT-L---PEDTDLVVTSPGWRPDAPLLAAAADAGI 103 (480)
T ss_pred cc-c---cCCCCEEEECCCcCCCCHHHHHHHHCCC
Confidence 22 1 1367999999999777776666666676
No 146
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=82.79 E-value=1.7 Score=40.05 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=24.2
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+||+|+|.|.||..+++.|.++. .+|.+++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g---~~V~~~d 30 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG---HTVYGVS 30 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC---CEEEEEE
Confidence 47999999999999999997653 4666564
No 147
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=82.35 E-value=7.8 Score=35.19 Aligned_cols=30 Identities=37% Similarity=0.432 Sum_probs=22.9
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+||+|.|.|.+|..++..|.+.. .++..+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG---HDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEE
Confidence 47999999999999999887643 3554444
No 148
>PLN02712 arogenate dehydrogenase
Probab=82.00 E-value=2 Score=45.14 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=26.9
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
.++||+|+|+|+||+.+++.|.+.. .+|++++..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G---~~V~~~dr~ 84 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQG---HTVLAHSRS 84 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCC---CEEEEEeCC
Confidence 4468999999999999999987653 577776544
No 149
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=81.78 E-value=2.4 Score=40.46 Aligned_cols=99 Identities=20% Similarity=0.173 Sum_probs=50.1
Q ss_pred eEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECC-eEEEEEecCC
Q 023894 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-KLIKVVSNRD 166 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inG-k~I~V~~~~d 166 (275)
+|+|.|.|.||-+.+.++--. +.-+|+++ |. +.+.++..-++.. ....+|. .. ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~--Ga~~Viv~-d~-~~~Rl~~A~~~~g--------------~~~~~~~~~~------~~ 226 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL--GASVVIVV-DR-SPERLELAKEAGG--------------ADVVVNPSED------DA 226 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCceEEEe-CC-CHHHHHHHHHhCC--------------CeEeecCccc------cH
Confidence 799999999998765544322 22466666 44 3344432222111 1111111 11 00
Q ss_pred CCC-CCcc-cccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 023894 167 PLQ-LPWA-ELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (275)
Q Consensus 167 P~~-i~w~-~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~ 210 (275)
... ..++ ..|+|+||||+|.....+.+-..++.|-.=+++.-+.
T Consensus 227 ~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 227 GAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccC
Confidence 000 0111 1489999999996554556666666544334444444
No 150
>PLN02712 arogenate dehydrogenase
Probab=81.39 E-value=2 Score=45.12 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=27.3
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
+++||+|+|+|+||+.+++.|.+.. .+|++++..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G---~~V~~~dr~ 401 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQG---HTVLAYSRS 401 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCc---CEEEEEECC
Confidence 4579999999999999999987642 577777654
No 151
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.98 E-value=2.8 Score=39.12 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=24.8
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.++||+|.|.|.+|+.+++.|.... .+|...+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G---~~V~~~~ 34 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANG---HRVRVWS 34 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCC---CEEEEEe
Confidence 3468999999999999999997653 3555454
No 152
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=79.90 E-value=2.6 Score=39.59 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=25.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
.+|+|.|+|+||+.+++.|.... .++.+.+..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G---~~V~v~~R~ 183 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG---ARVFVGARS 183 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC---CEEEEEeCC
Confidence 58999999999999999997653 466666543
No 153
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=79.31 E-value=2.8 Score=40.52 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=27.7
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
|.++|.|+|||.+|+..+|.+..+. .+++|+.-+.
T Consensus 1 m~~~vvqyGtG~vGv~air~l~akp--e~elvgawv~ 35 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAKP--ELELVGAWVH 35 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcCC--CCceEEEEec
Confidence 4578999999999999999998753 4777766443
No 154
>PRK08507 prephenate dehydrogenase; Validated
Probab=79.29 E-value=3.2 Score=38.02 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=24.0
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+||+|+|+|.+|..+++.|.+.. ...++++++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g-~~~~v~~~d 32 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKG-LISKVYGYD 32 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcC-CCCEEEEEc
Confidence 37999999999999999987643 224555543
No 155
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=79.08 E-value=4.6 Score=38.96 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=24.9
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCC-CceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDS-PLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~-~l~iVaIn 119 (275)
+||+|.|-|.||..++-.|..+... .+-++-|+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4899999999999999888665433 45555555
No 156
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=79.07 E-value=6 Score=37.47 Aligned_cols=86 Identities=16% Similarity=0.056 Sum_probs=50.2
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
-||-|+| +|++|+.+++-+..-.++ .+..||-. +|..++ .| ++++ +
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~--~v~~V~p~-----------------~~~~~v----------~G--~~~y--~ 53 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTN--IVGGVTPG-----------------KGGTTV----------LG--LPVF--D 53 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCC--EEEEECCC-----------------CCccee----------cC--eecc--C
Confidence 4799999 999999998888764332 55556533 111111 11 1121 2
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVII 206 (275)
+.+++|..- ++|+++-+.+...-.+-+....+.|+|.+||
T Consensus 54 sv~dlp~~~-~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avI 93 (286)
T TIGR01019 54 SVKEAVEET-GANASVIFVPAPFAADAIFEAIDAGIELIVC 93 (286)
T ss_pred CHHHHhhcc-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 233344221 3677777777766666666666677776655
No 157
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=79.03 E-value=3 Score=39.27 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=21.5
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~ 109 (275)
+.++|+|+|+|.||+.++|.+-++.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g 26 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG 26 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC
Confidence 3468999999999999999997653
No 158
>PLN02602 lactate dehydrogenase
Probab=78.81 E-value=3.9 Score=39.71 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=19.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~ 109 (275)
.||+|.|.|.||..++-.|..+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~ 60 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQD 60 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC
Confidence 69999999999999998776553
No 159
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.71 E-value=1.3 Score=42.15 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.6
Q ss_pred eeEEEECCChhHHHHHHHHHhCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~ 109 (275)
.||+|.|.|.||..++-.|..+.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~ 26 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKG 26 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC
Confidence 58999999999999988776553
No 160
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.58 E-value=3.3 Score=37.46 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.7
Q ss_pred eeEEEECCChhHHHHHHHHHhC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er 108 (275)
+||+|+|+|++|+.+++.|...
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~ 22 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS 22 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC
Confidence 3799999999999999999764
No 161
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=78.56 E-value=9.7 Score=36.93 Aligned_cols=85 Identities=25% Similarity=0.361 Sum_probs=51.3
Q ss_pred eEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhh---hhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNAS---HLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a---~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
||.|+|.|.+|+.++|.|.++. .+ |.+.|....+... .+++. . .| |+++..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G---~~-V~~sD~~~~~~~~~~~~~~~~---------------~-----~g--i~~~~g 54 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG---AE-VTVTDLKPNEELEPSMGQLRL---------------N-----EG--SVLHTG 54 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC---CE-EEEEeCCCCccchhHHHHHhh---------------c-----cC--cEEEec
Confidence 5889999999999999998764 34 3455542111110 01110 0 11 222222
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
.++++++ +.|+||-+.|.-.+.+......+.|.+
T Consensus 55 ~~~~~~~----~~d~vv~sp~i~~~~p~~~~a~~~~i~ 88 (433)
T TIGR01087 55 LHLEDLN----NADLVVKSPGIPPDHPLVQAAAKRGIP 88 (433)
T ss_pred CchHHhc----cCCEEEECCCCCCCCHHHHHHHHCCCc
Confidence 3344442 578999999998787777777777763
No 162
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=78.26 E-value=1.9 Score=42.02 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.1
Q ss_pred ceeeEEEECCChhHHHHHHHHHh
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHG 107 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~e 107 (275)
+..+|+|.|+||||..+++-|..
T Consensus 161 ~gK~vgilG~G~IG~~ia~rL~~ 183 (336)
T KOG0069|consen 161 EGKTVGILGLGRIGKAIAKRLKP 183 (336)
T ss_pred cCCEEEEecCcHHHHHHHHhhhh
Confidence 44689999999999999998865
No 163
>PLN02688 pyrroline-5-carboxylate reductase
Probab=78.22 E-value=4.1 Score=36.74 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=26.0
Q ss_pred eeEEEECCChhHHHHHHHHHhCCC-CCceEEEEcCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDS 121 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~-~~l~iVaInd~ 121 (275)
+||+++|+|.+|..+++.|.+... ...++++.++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 479999999999999999986531 12366666444
No 164
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=77.94 E-value=3.2 Score=38.61 Aligned_cols=31 Identities=26% Similarity=0.436 Sum_probs=24.7
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
+||+|+|+|++|..+++.|.+.. .++++.|.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g---~~v~v~dr 31 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG---HEVVGYDR 31 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC---CeEEEEEC
Confidence 37999999999999999998753 46665543
No 165
>PLN02494 adenosylhomocysteinase
Probab=77.67 E-value=5.5 Score=40.55 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=24.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|+|.|+|.||+.+++.+.... .+|++++
T Consensus 255 KtVvViGyG~IGr~vA~~aka~G---a~VIV~e 284 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAG---ARVIVTE 284 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 57999999999999999886543 4776664
No 166
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=77.54 E-value=3.3 Score=42.09 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=24.6
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
..+|+|+|+|+|||.+++.+..+. .+|++++
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~G---a~ViV~e 284 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFG---ARVVVTE 284 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 468999999999999999987653 4665553
No 167
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=77.39 E-value=15 Score=33.28 Aligned_cols=137 Identities=16% Similarity=0.201 Sum_probs=67.9
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCce-EEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~-iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
-+|.|+|-|-||...++++-.+. .+ ++++ +. +.+.+..+.+ +|. +. .++.+.. ..
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G---~~~Vi~~-~~-~~~r~~~a~~----~Ga---~~--------~i~~~~~----~~ 177 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAG---AARVVAA-DP-SPDRRELALS----FGA---TA--------LAEPEVL----AE 177 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEE-CC-CHHHHHHHHH----cCC---cE--------ecCchhh----HH
Confidence 47999999999999888775543 44 6666 33 2233322211 121 10 1111000 00
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCccc-CCCCCCeeeeeCCCcchh
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKD-YDHEVANIVRSVYSCMLI 244 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~-~~~~~~~IIS~nASCTTn 244 (275)
.-.++. ...++|+|||++|.-...+.+-..++.|.+-+++.....+ .+ ..++... +..+ ..|+. .-..+..
T Consensus 178 ~~~~~~-~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~--~~---~~i~~~~~~~~~-~~i~g-~~~~~~~ 249 (280)
T TIGR03366 178 RQGGLQ-NGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPG--GP---VALDPEQVVRRW-LTIRG-VHNYEPR 249 (280)
T ss_pred HHHHHh-CCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCC--Cc---eeeCHHHHHhCC-cEEEe-cCCCCHH
Confidence 000010 1237999999999765555666777766543334322211 11 1233322 2223 55666 4444445
Q ss_pred hhHHHHHHhhh
Q 023894 245 KMATLFHFISL 255 (275)
Q Consensus 245 ~LaPvlkvL~~ 255 (275)
.+..+++.|.+
T Consensus 250 ~~~~~~~~l~~ 260 (280)
T TIGR03366 250 HLDQAVRFLAA 260 (280)
T ss_pred HHHHHHHHHHh
Confidence 56667777765
No 168
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=77.14 E-value=4.6 Score=37.85 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=23.2
Q ss_pred eEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
||+|.|.|.+|+.++..|..+.. .-+++.++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~-~~ei~l~D 32 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGI-ADELVLID 32 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 79999999999999998876541 11455454
No 169
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=76.86 E-value=11 Score=37.55 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=54.1
Q ss_pred ceeeEEEECC----ChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEE
Q 023894 85 AKLKVAINGF----GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK 160 (275)
Q Consensus 85 ~~~kVaInGf----GrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~ 160 (275)
.+.+|+|+|. |.+|+.+++.|.+..+. =++..||-. |+.++ | ++
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~-g~v~~Vnp~-----------~~~i~------------------G--~~ 53 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYK-GKIYPVNPK-----------AGEIL------------------G--VK 53 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCCCC-CcEEEECCC-----------CCccC------------------C--cc
Confidence 3567999995 88999999999865421 266667643 12211 2 11
Q ss_pred EEecCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 023894 161 VVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (275)
Q Consensus 161 V~~~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVII 206 (275)
++ .+.+++| ..+|+++-+++.-...+-+....+.|+|.+||
T Consensus 54 ~~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 54 AY--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred cc--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 21 1233333 25788888888777777777777778887766
No 170
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=76.48 E-value=5.3 Score=37.97 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.5
Q ss_pred eeeEEEECCChhHHHHHHHHHhCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~ 109 (275)
+.||+|.|.|.||..++-.|..+.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~ 29 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQG 29 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC
Confidence 469999999999999998877653
No 171
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=76.18 E-value=3.8 Score=39.59 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=25.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
|+|.|.|+|++|+.+++.|.++. .++++|..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g---~~v~vid~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN---NDVTVIDT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CcEEEEEC
Confidence 47999999999999999997653 57777753
No 172
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=75.74 E-value=4 Score=37.97 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=24.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+||+++|+|++|..+++.|.+.. .++++.|
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g---~~v~v~d 30 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG---HEVVGYD 30 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCC---CEEEEEE
Confidence 37999999999999999988653 5766554
No 173
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.72 E-value=12 Score=37.42 Aligned_cols=83 Identities=20% Similarity=0.219 Sum_probs=50.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe-cC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS-NR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~-~~ 165 (275)
.+|.|.|+|++|+..++.|..+. .+++ +.|. ..+....+.+ + | +.++. ..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G---~~v~-~~D~-~~~~~~~l~~----~------------------g--~~~~~~~~ 63 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG---ARPT-VCDD-DPDALRPHAE----R------------------G--VATVSTSD 63 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC---CEEE-EEcC-CHHHHHHHHh----C------------------C--CEEEcCcc
Confidence 47999999999999999887653 3544 4554 2222222111 1 1 11111 11
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
.++.+. +.|+||.+.|.-.+.+......+.|++
T Consensus 64 ~~~~l~----~~D~VV~SpGi~~~~p~~~~a~~~gi~ 96 (488)
T PRK03369 64 AVQQIA----DYALVVTSPGFRPTAPVLAAAAAAGVP 96 (488)
T ss_pred hHhHhh----cCCEEEECCCCCCCCHHHHHHHHCCCc
Confidence 223232 569999999998888877777777874
No 174
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.42 E-value=6.7 Score=37.50 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.2
Q ss_pred eeeEEEECC-ChhHHHHHHHHHhCC
Q 023894 86 KLKVAINGF-GRIGRNFLRCWHGRK 109 (275)
Q Consensus 86 ~~kVaInGf-GrIGR~vlR~l~er~ 109 (275)
|+||+|.|. |.||..++-.|..+.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~ 26 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGE 26 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 579999997 999999988777543
No 175
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=75.39 E-value=4.7 Score=39.65 Aligned_cols=100 Identities=20% Similarity=0.187 Sum_probs=53.2
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEE-EEecC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIK-VVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~-V~~~~ 165 (275)
-.|+|.|.|-||-....-+.... --+|++|.- +.+++..-.++--|| .+|.+... +..
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~ag--A~~IiAvD~--~~~Kl~~A~~fGAT~---------------~vn~~~~~~vv~-- 245 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAG--AGRIIAVDI--NPEKLELAKKFGATH---------------FVNPKEVDDVVE-- 245 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcC--CceEEEEeC--CHHHHHHHHhcCCce---------------eecchhhhhHHH--
Confidence 46999999999987665443221 237777742 333443333322222 23433221 110
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 209 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP 209 (275)
-. .+-++.|+|++|||+|.-...+.+-.....|=+-|+|--|
T Consensus 246 ~i--~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 246 AI--VELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred HH--HHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecC
Confidence 00 1122349999999999987766555444443333555433
No 176
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=75.19 E-value=3.1 Score=43.10 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=25.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|-|.||||+|+.++|.|.++. +++++|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g---~~vvvID 430 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSG---VKMTVLD 430 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCC---CCEEEEE
Confidence 57999999999999999998753 6777774
No 177
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=75.14 E-value=4.2 Score=37.90 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=24.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
|||+|+|+|++|..+++.|.+.. .++++.|
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g---~~V~~~d 30 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG---HDCVGYD 30 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC---CEEEEEE
Confidence 37999999999999999987653 5766654
No 178
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=75.00 E-value=37 Score=30.18 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=24.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
.+|.|+|-|.+|...++.|.+.. -++++|+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g---a~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG---AHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 58999999999999999888754 36666653
No 179
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=74.82 E-value=4.5 Score=35.52 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=21.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
|||+|.|.|.+|-.++-++.+.. .+++++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G---~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG---HQVIGVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT---SEEEEE-
T ss_pred CEEEEECCCcchHHHHHHHHhCC---CEEEEEe
Confidence 68999999999999888887754 5777763
No 180
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=74.52 E-value=4.5 Score=37.27 Aligned_cols=102 Identities=28% Similarity=0.409 Sum_probs=56.6
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC---------CChhhhhhhccccccccc-cCceEEEecCCeEEEC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSLLGT-FKADVKIVDNETISVD 155 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~---------~~~~~~a~LLkyDS~hG~-f~~~v~~~e~~~l~in 155 (275)
..+|+|-|||.+|+.+++.|.+.. ..+|+|.|. .|++.+..+. +. +|. +..- +.. ..+
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~G---a~vv~vsD~~G~i~~~~Gld~~~l~~~~--~~-~~~~v~~~----~~~--~~~ 99 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELG---AKVVAVSDSSGAIYDPDGLDVEELLRIK--EE-RGSRVDDY----PLE--SPD 99 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT---EEEEEEEESSEEEEETTEEHHHHHHHHH--HH-HSSHSTTG----THT--CSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CEEEEEecCceEEEcCCCchHHHHHHHH--HH-hCCccccc----ccc--ccc
Confidence 368999999999999999999864 688888553 2333333321 11 111 1110 000 000
Q ss_pred CeEEEEEecCCCCCCCcccccccEEEcCC-CCCCChhhHHHHHHcCCCEEEE
Q 023894 156 GKLIKVVSNRDPLQLPWAELGIDIVIEGT-GVFVDGPGAGKHIQAGAKKVII 206 (275)
Q Consensus 156 Gk~I~V~~~~dP~~i~w~~~giDiVie~T-G~f~~~e~a~~Hl~aGakkVII 206 (275)
+ .+.+. +.+++ | +..+|+.+=|. +.-++.+.+...++.||| +|+
T Consensus 100 ~--~~~~~--~~~~i-l-~~~~DiliP~A~~~~I~~~~~~~~i~~~ak-iIv 144 (244)
T PF00208_consen 100 G--AEYIP--NDDEI-L-SVDCDILIPCALGNVINEDNAPSLIKSGAK-IIV 144 (244)
T ss_dssp T--SEEEC--HHCHG-G-TSSSSEEEEESSSTSBSCHHHCHCHHTT-S-EEE
T ss_pred c--eeEec--ccccc-c-cccccEEEEcCCCCeeCHHHHHHHHhccCc-EEE
Confidence 0 01111 10112 3 34788888775 666777777767777886 455
No 181
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=74.46 E-value=14 Score=34.31 Aligned_cols=90 Identities=17% Similarity=0.082 Sum_probs=47.4
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCc-eEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l-~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
-+|.|+|.|-||...+.++..+. . +++++... .+.+..+.+ +|. +. ++|-+.-.+. +
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G---~~~Vi~~~~~--~~~~~~a~~----lGa---~~--------vi~~~~~~~~--~ 228 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLG---AAEIVCADVS--PRSLSLARE----MGA---DK--------LVNPQNDDLD--H 228 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEeCC--HHHHHHHHH----cCC---cE--------EecCCcccHH--H
Confidence 47999999999999888776543 3 34444322 233332222 221 11 1111000000 0
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
-.. .. .++|+||||+|.-...+.+-..++.|-+
T Consensus 229 ~~~--~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~ 261 (343)
T PRK09880 229 YKA--EK--GYFDVSFEVSGHPSSINTCLEVTRAKGV 261 (343)
T ss_pred Hhc--cC--CCCCEEEECCCCHHHHHHHHHHhhcCCE
Confidence 000 01 1589999999975445556677777653
No 182
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=74.44 E-value=3.9 Score=37.57 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=23.8
Q ss_pred eEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
||+|+|+|.+|+.+++.|.+.. .++++.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G---~~V~~~d 29 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG---YQLHVTT 29 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC---CeEEEEc
Confidence 5999999999999999988653 5776665
No 183
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=74.24 E-value=8.1 Score=36.49 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.9
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~ 109 (275)
+||+|.| .|.+|..++..|..+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g 24 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKED 24 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCC
Confidence 5899999 5999999999888753
No 184
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=73.15 E-value=3.7 Score=41.60 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=24.0
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|+|+|.|.+|+.+++.+.... ++++..+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG---~~V~l~D 37 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAG---HTVLLYD 37 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEe
Confidence 47999999999999999887543 6766554
No 185
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=72.80 E-value=7.1 Score=32.96 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=32.4
Q ss_pred EEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhc
Q 023894 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (275)
Q Consensus 89 VaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LL 131 (275)
|+|.| +|-||++.++.+.+.+ ++++++++.--.+.+.+....
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~-d~f~v~~Lsa~~n~~~L~~q~ 43 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP-DKFEVVALSAGSNIEKLAEQA 43 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT-TTEEEEEEEESSTHHHHHHHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCC-CceEEEEEEcCCCHHHHHHHH
Confidence 68999 9999999999987653 469998887655666655444
No 186
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=72.73 E-value=5.5 Score=37.03 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=23.4
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.||+|+|+|.||+.+++.|.... ...++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g-~~~~V~~~d 38 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLG-LAGEIVGAD 38 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 58999999999999999887542 112554443
No 187
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.72 E-value=6.4 Score=36.12 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=24.6
Q ss_pred eeEEEECCChhHHHHHHHHHhCC-CCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~-~~~l~iVaIn 119 (275)
+||+++|.|.+|+.+++.|.++. ....++++.+
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~ 37 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN 37 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC
Confidence 58999999999999999998653 1123555554
No 188
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=72.60 E-value=4.7 Score=41.60 Aligned_cols=31 Identities=35% Similarity=0.561 Sum_probs=26.0
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
..+|.|.||||+|+.+.|.|.++. .++++|.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID 430 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK---MRITVLE 430 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC---CCEEEEE
Confidence 357999999999999999997653 6877775
No 189
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=72.17 E-value=16 Score=35.88 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=51.6
Q ss_pred eeEEEECCChhHHH-HHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~-vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
.+|.|.|.|..|+. ++|.|.++. .++ .+.|....+....|-+ . | ++++...
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G---~~V-~~~D~~~~~~~~~l~~-----------------~-----g--i~~~~~~ 59 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG---YKV-SGSDLKESAVTQRLLE-----------------L-----G--AIIFIGH 59 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC---CeE-EEECCCCChHHHHHHH-----------------C-----C--CEEeCCC
Confidence 47999999999999 799998764 353 4555522222222110 0 1 2222223
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
+++.++ +.|+||-+.|.-.+.+......+.|.+
T Consensus 60 ~~~~~~----~~d~vv~spgi~~~~~~~~~a~~~~i~ 92 (461)
T PRK00421 60 DAENIK----DADVVVYSSAIPDDNPELVAARELGIP 92 (461)
T ss_pred CHHHCC----CCCEEEECCCCCCCCHHHHHHHHCCCc
Confidence 344442 678999999998887777666666763
No 190
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=72.14 E-value=17 Score=34.44 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=22.0
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
-+|.|.|.|.||...+.++-.+. .+++++.
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~G---a~vi~~~ 214 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFG---LKVTVIS 214 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 47999999999998888765543 4665553
No 191
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=72.02 E-value=11 Score=37.48 Aligned_cols=93 Identities=23% Similarity=0.291 Sum_probs=55.4
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
+||.|.|.|+||+.+++.|..+.+ .+|. |-|. ..++.+.+. +++.+ .++ .+.++- .+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~-iAdR-s~~~~~~i~--~~~~~----~v~-----~~~vD~--------~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVT-IADR-SKEKCARIA--ELIGG----KVE-----ALQVDA--------AD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEE-EEeC-CHHHHHHHH--hhccc----cce-----eEEecc--------cC
Confidence 589999999999999999877653 4543 3333 233333221 12221 111 122211 12
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
++.+.=--.+.|+||.|.+-|.+..-+...++.|..
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~ 94 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGVD 94 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCC
Confidence 211100011449999999999999988899999985
No 192
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=71.85 E-value=27 Score=35.03 Aligned_cols=34 Identities=35% Similarity=0.520 Sum_probs=28.8
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
+..+|+|=|||.+|+.+++.|++.. -++|++.|.
T Consensus 206 ~G~rVaVQG~GNVg~~aa~~l~~~G---Akvva~sds 239 (411)
T COG0334 206 EGARVAVQGFGNVGQYAAEKLHELG---AKVVAVSDS 239 (411)
T ss_pred CCCEEEEECccHHHHHHHHHHHHcC---CEEEEEEcC
Confidence 3468999999999999999998653 588899886
No 193
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=71.81 E-value=2.7 Score=41.43 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.1
Q ss_pred eeEEEECCChhHHHHHHHHHhC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er 108 (275)
..+||.||||||+++++++...
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~ 168 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAM 168 (406)
T ss_pred cEEEEeecccchHHHHHHHHhc
Confidence 5699999999999999988643
No 194
>PLN00106 malate dehydrogenase
Probab=71.63 E-value=7.2 Score=37.46 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.7
Q ss_pred eeEEEECC-ChhHHHHHHHHHhCC
Q 023894 87 LKVAINGF-GRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInGf-GrIGR~vlR~l~er~ 109 (275)
.||+|.|. |+||..++..|..+.
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~ 42 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNP 42 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 58999997 999999999887543
No 195
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=71.44 E-value=24 Score=32.17 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.7
Q ss_pred eeEEEECCChhHHHHHHHHHhC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er 108 (275)
|||+|.|.|.+|..++..|.+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~ 22 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA 22 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC
Confidence 4899999999999999988764
No 196
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=71.37 E-value=2 Score=38.61 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.2
Q ss_pred eeEEEECCChhHHHHHHHHHhCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~ 109 (275)
.||.|.|.|-+|-.+++.|....
T Consensus 22 ~~VlivG~GglGs~va~~La~~G 44 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAG 44 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC
Confidence 58999999999999999987543
No 197
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=71.10 E-value=7.2 Score=36.17 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=24.6
Q ss_pred eeEEEECCChhHHHHHHHHHhCCC-CCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~-~~l~iVaIn 119 (275)
+||+++|.|.+|..+++.|.++.. ..-++.+.+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~ 36 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSD 36 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEEC
Confidence 589999999999999999986532 223555444
No 198
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.99 E-value=5.9 Score=38.84 Aligned_cols=42 Identities=36% Similarity=0.588 Sum_probs=34.8
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhh
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNA 127 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~ 127 (275)
+.+|+||.|.|+|+|-+++.|.........||+|.++ +++..
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A 46 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP-SLERA 46 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc-cHHHH
Confidence 5689999999999999999998655456899999998 44443
No 199
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.85 E-value=26 Score=34.88 Aligned_cols=83 Identities=24% Similarity=0.282 Sum_probs=50.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec-C
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~-~ 165 (275)
.||.|.|+|..|+.+++.|..+. .++. +.|. +......++. . .| |+++.. .
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G---~~V~-~~D~-~~~~~~~~l~----------------~-----~g--i~~~~~~~ 67 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELG---CDVV-VADD-NETARHKLIE----------------V-----TG--VADISTAE 67 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC---CEEE-EECC-ChHHHHHHHH----------------h-----cC--cEEEeCCC
Confidence 47999999999999999998654 3443 4443 1111111111 0 11 222222 2
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGa 201 (275)
++++++ +.|+||-+.|+-.+........+.|.
T Consensus 68 ~~~~~~----~~d~vV~Spgi~~~~p~~~~a~~~gi 99 (473)
T PRK00141 68 ASDQLD----SFSLVVTSPGWRPDSPLLVDAQSQGL 99 (473)
T ss_pred chhHhc----CCCEEEeCCCCCCCCHHHHHHHHCCC
Confidence 233332 67899999999877777777667776
No 200
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.75 E-value=22 Score=35.39 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=50.7
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChh---hhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVK---NASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~---~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~ 163 (275)
.||+|.|+|+-|+..+|.|..+. .++ .+.|..+.. ....| + ++ + +.+..
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g---~~v-~~~d~~~~~~~~~~~~l-~---------------~~------~--~~~~~ 60 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL---PAQ-ALTLFCNAVEAREVGAL-A---------------DA------A--LLVET 60 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC---CEE-EEEcCCCcccchHHHHH-h---------------hc------C--EEEeC
Confidence 47999999999999999998754 343 345542111 10111 0 10 1 11111
Q ss_pred cCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 164 ~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
..+++.+ .++|+||-+.|+-.+.+......+.|.+
T Consensus 61 ~~~~~~~----~~~d~vV~SpgI~~~~p~~~~a~~~~i~ 95 (468)
T PRK04690 61 EASAQRL----AAFDVVVKSPGISPYRPEALAAAARGTP 95 (468)
T ss_pred CCChHHc----cCCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 2233333 2579999999998888777777677764
No 201
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=70.75 E-value=9 Score=33.99 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=24.5
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
.+++|.|.| .|.||+.+++.|.++. .+++++
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g---~~V~~~ 47 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKG---FAVKAG 47 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCC---CEEEEE
Confidence 446899999 8999999999998753 465544
No 202
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=70.72 E-value=4.9 Score=40.73 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=26.3
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
+-+|.|.|+||+||.++|.|.++. .++++|..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g---~~vvvId~ 448 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAG---IPLVVIET 448 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCC---CCEEEEEC
Confidence 357999999999999999998754 57777763
No 203
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.68 E-value=7.5 Score=36.92 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.0
Q ss_pred eEEEECCChhHHHHHHHHHhCC
Q 023894 88 KVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~ 109 (275)
||+|+|.|.||..++-.|..+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~ 22 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcC
Confidence 7999999999999988777653
No 204
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=70.21 E-value=3.9 Score=38.38 Aligned_cols=105 Identities=12% Similarity=0.179 Sum_probs=52.5
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC----CChhhhhhhccccccccccCceEEEecCCeEEECC-eEEE
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS----GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-KLIK 160 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~----~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inG-k~I~ 160 (275)
..+|.|.|.|-+|-.++..|....-.++.+ |..- .+++. +++-..++.|+...++-. ..-..+|- -.|.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itL--iD~D~V~~sNlnR--Q~~~~~~~vG~~Kve~~~--~rl~~INP~~~V~ 103 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITL--IDMDDVCVTNTNR--QIHALRDNVGLAKAEVMA--ERIRQINPECRVT 103 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEE--EeCCEeccccccc--ccccChhhcChHHHHHHH--HHHHhHCCCcEEE
Confidence 358999999999999999997643233332 3211 23332 222223445554333221 11111221 1222
Q ss_pred EEecC-CCCCCC-cccccccEEEcCCCCCCChhhHHHH
Q 023894 161 VVSNR-DPLQLP-WAELGIDIVIEGTGVFVDGPGAGKH 196 (275)
Q Consensus 161 V~~~~-dP~~i~-w~~~giDiVie~TG~f~~~e~a~~H 196 (275)
.+... ++++++ +-..+.|+||+|++.+..+..+...
T Consensus 104 ~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~ 141 (268)
T PRK15116 104 VVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAY 141 (268)
T ss_pred EEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHH
Confidence 22211 233221 1123689999999987665544443
No 205
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.19 E-value=26 Score=34.93 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=23.9
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
.+|.|.|+|+.|+.++|.|..+. .++. +.|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G---~~v~-~~D~ 38 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHG---ARLR-VADT 38 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC---CEEE-EEcC
Confidence 47999999999999999998764 4544 4443
No 206
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=70.05 E-value=6.4 Score=39.16 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=24.0
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|+|.|+|.||+.+++.+.... .+++++.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~G---a~ViV~d 225 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMG---ARVIVTE 225 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCc---CEEEEEe
Confidence 58999999999999999886543 5766653
No 207
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=70.05 E-value=7.3 Score=37.73 Aligned_cols=31 Identities=35% Similarity=0.374 Sum_probs=24.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
.+|+|+|+|.+|+.+++.|.+.. +++++.+.
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG---~~Vvv~~r 48 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSG---VDVVVGLR 48 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCC---CEEEEEEC
Confidence 57999999999999999987643 57655433
No 208
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=70.02 E-value=7.6 Score=35.84 Aligned_cols=34 Identities=12% Similarity=0.317 Sum_probs=25.2
Q ss_pred eeEEEECCChhHHHHHHHHHhCC-CCCceEEEEcC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~-~~~l~iVaInd 120 (275)
+||+|.|.|.+|..+++.|.+.. ....++++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 47999999999999999987653 11245666654
No 209
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.00 E-value=23 Score=34.40 Aligned_cols=88 Identities=23% Similarity=0.336 Sum_probs=51.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
.+|.|.|-|++|+.+++.|.++. .++.++ |...-+.+...++ ..+ + .| ++++....
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G---~~V~~~-d~~~~~~~~~~~~----------~l~--~------~~--~~~~~~~~ 61 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG---AKVILT-DEKEEDQLKEALE----------ELG--E------LG--IELVLGEY 61 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE-eCCchHHHHHHHH----------HHH--h------cC--CEEEeCCc
Confidence 57999999999999999998764 354444 4422111111110 000 0 01 12222222
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGa 201 (275)
++++ ..+.|+||-++|...+.+......+.|.
T Consensus 62 ~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i 93 (450)
T PRK14106 62 PEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI 93 (450)
T ss_pred chhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 2221 1268999999999888887777666776
No 210
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=69.80 E-value=7.3 Score=35.83 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=23.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+||+|.|.|.+|..+++.|.+.. .++..++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g---~~V~~~~ 31 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG---HDVTLWA 31 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEE
Confidence 58999999999999999987643 3554444
No 211
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=69.47 E-value=8.1 Score=35.41 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=24.2
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+++++|.|+|.||.-+.|.|.... .+++..+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag---~eV~igs 31 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAG---HEVIIGS 31 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCC---CeEEEec
Confidence 368999999999999999987543 5665553
No 212
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=69.16 E-value=3.4 Score=37.05 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.6
Q ss_pred eeeEEEECCChhHHHHHHHHHhCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~ 109 (275)
..+|.|.|.|-+|-.++..|....
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~G 51 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSG 51 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 468999999999999999987543
No 213
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=68.89 E-value=13 Score=33.70 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=23.4
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
.+|.|-| .|-||+.+++.|.++. .+++++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g---~~V~~~ 34 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG---YTVKAT 34 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC---CEEEEE
Confidence 4799999 9999999999998764 365544
No 214
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=68.74 E-value=5.2 Score=37.73 Aligned_cols=109 Identities=14% Similarity=0.172 Sum_probs=57.7
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC--CChhhhhhhccccccccccCceEEEecCCeEEECCe-EEEEEe
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGK-LIKVVS 163 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~--~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk-~I~V~~ 163 (275)
-+|.|.|-|-+|--.+++|....-.++.+|=..+. .+++.-.|-+. ++.|+-+-++- .+.-..||=. ++..+.
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~--~~iGk~Kv~vm--~eri~~InP~c~V~~~~ 106 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALL--GDIGKPKVEVM--KERIKQINPECEVTAIN 106 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhh--hhcccHHHHHH--HHHHHhhCCCceEeehH
Confidence 47999999999999999998544344554333332 34444334332 44555443322 1222223321 111111
Q ss_pred cC-CCCCCC-cccccccEEEcCCCCCCChhhHHHHHHc
Q 023894 164 NR-DPLQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQA 199 (275)
Q Consensus 164 ~~-dP~~i~-w~~~giDiVie~TG~f~~~e~a~~Hl~a 199 (275)
.. ++++++ +-..+.||||||.-....+..+-.....
T Consensus 107 ~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~ 144 (263)
T COG1179 107 DFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRR 144 (263)
T ss_pred hhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHH
Confidence 00 223221 2233899999999888777655554443
No 215
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=68.70 E-value=6.6 Score=38.25 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=24.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
|||+|+|.|.+|..++..|.++. .++++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G---~~V~~~d 30 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG---HEVTGVD 30 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC---CeEEEEE
Confidence 47999999999999999998653 4666664
No 216
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=68.59 E-value=7.8 Score=36.45 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=25.0
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
..||.|.|+|++|+.+++.|.... .++.+++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r 183 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG---ANVTVGAR 183 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEEC
Confidence 468999999999999999987653 36555543
No 217
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=68.59 E-value=8.8 Score=33.35 Aligned_cols=157 Identities=14% Similarity=0.106 Sum_probs=68.1
Q ss_pred eEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CC----hhhhhhhccccccccccCceEEEecCCeEEECCeEEEEE
Q 023894 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GG----VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVV 162 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~----~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~ 162 (275)
||+|+|.|.+|+.++-.+.... ++++.+.-. .. .+++...|+..-..|.+...-. . .. . ..|++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~-~--~~--~--~~i~~~ 70 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG---YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEA-D--AA--L--ARISFT 70 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT---SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHH-H--HH--H--HTEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHhCC---CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhh-h--hh--h--hhcccc
Confidence 6999999999999998877643 576555432 11 1222222222222222221100 0 00 0 123332
Q ss_pred ecCCCCCCCcccccccEEEcCCCCCCChhh-HHHHHHc--CCCEEEEeCCC--------CCCCCC---eEEeecCcccCC
Q 023894 163 SNRDPLQLPWAELGIDIVIEGTGVFVDGPG-AGKHIQA--GAKKVIITAPA--------KGADIP---TYVVGVNEKDYD 228 (275)
Q Consensus 163 ~~~dP~~i~w~~~giDiVie~TG~f~~~e~-a~~Hl~a--GakkVIISAP~--------k~~DiP---~iV~GVN~~~~~ 228 (275)
.|.+.. .+.|+||||...-...+. .-+.++. ....++.|+.+ ..-+-| +-+.-.|+-...
T Consensus 71 --~dl~~~----~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~ 144 (180)
T PF02737_consen 71 --TDLEEA----VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLM 144 (180)
T ss_dssp --SSGGGG----CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT-
T ss_pred --cCHHHH----hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccC
Confidence 344433 289999999865433321 1233332 23336656543 111112 223334443333
Q ss_pred CCCCeeeeeCCCcchhhhHHHHHHhhhhcCceEEE
Q 023894 229 HEVANIVRSVYSCMLIKMATLFHFISLLTNLASAA 263 (275)
Q Consensus 229 ~~~~~IIS~nASCTTn~LaPvlkvL~~~fgI~~v~ 263 (275)
+- -.||. ++...-..+.-+...+.+ .|-.=+.
T Consensus 145 ~l-VEvv~-~~~T~~~~~~~~~~~~~~-~gk~pv~ 176 (180)
T PF02737_consen 145 PL-VEVVP-GPKTSPETVDRVRALLRS-LGKTPVV 176 (180)
T ss_dssp -E-EEEEE--TTS-HHHHHHHHHHHHH-TT-EEEE
T ss_pred ce-EEEeC-CCCCCHHHHHHHHHHHHH-CCCEEEE
Confidence 33 46888 887555555555555554 4554433
No 218
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=68.22 E-value=3 Score=40.16 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.4
Q ss_pred eEEEECCChhHHHHHHHHHhCC
Q 023894 88 KVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~ 109 (275)
||.|.|.|-+|-.+++.|....
T Consensus 1 kVLIvGaGGLGs~vA~~La~aG 22 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcC
Confidence 6899999999999999997643
No 219
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=67.49 E-value=7.8 Score=36.06 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=24.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
.||+|+|.|.+|..+++.|.+.. .++.+.|.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G---~~V~v~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG---HQLQVFDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 38999999999999999998653 46655543
No 220
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.33 E-value=31 Score=33.69 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=51.1
Q ss_pred eEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCC-hhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe-cC
Q 023894 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS-NR 165 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~-~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~-~~ 165 (275)
-|.|+|.|.+|+.++|.|.++. .++ .+.|..+ ......|- + .+..+++.. ..
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G---~~v-~~~D~~~~~~~~~~l~----------------~------~~~g~~~~~~~~ 61 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG---IPF-AVMDSREQPPGLDTLA----------------R------EFPDVELRCGGF 61 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC---CeE-EEEeCCCCchhHHHHH----------------h------hcCCcEEEeCCC
Confidence 4999999999999999998764 343 4555411 11111110 0 000123322 23
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
++++++ +.|+||-+.|.-.+.+......+.|.+
T Consensus 62 ~~~~~~----~~d~vV~sp~i~~~~p~~~~a~~~~i~ 94 (448)
T PRK03803 62 DCELLV----QASEIIISPGLALDTPALRAAAAMGIE 94 (448)
T ss_pred ChHHhc----CCCEEEECCCCCCCCHHHHHHHHCCCc
Confidence 455442 578999999998887777776677763
No 221
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=67.32 E-value=8 Score=36.15 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=23.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+||+++|.|++|..+++.|.+.. .++.+.+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G---~~v~v~~ 30 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAG---HQLHVTT 30 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC---CeEEEEe
Confidence 37999999999999999998653 4555443
No 222
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=66.89 E-value=8.4 Score=37.91 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=25.8
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
++||+|+|.|.+|..++.+|.++. .++++++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G---~~V~~~D 33 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQ---KQVIGVD 33 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCC---CEEEEEe
Confidence 368999999999999999998754 5777775
No 223
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=66.41 E-value=4.1 Score=39.18 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.5
Q ss_pred eeeEEEECCChhHHHHHHHHHhCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~ 109 (275)
..+|.|+|.|.+|..+++.|....
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aG 47 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAG 47 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 357999999999999999987643
No 224
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.35 E-value=30 Score=33.55 Aligned_cols=85 Identities=28% Similarity=0.454 Sum_probs=50.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCC--h-hhhhhhccccccccccCceEEEecCCeEEECCeEEEEEe
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG--V-KNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVS 163 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~--~-~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~ 163 (275)
.+|.|.|.|++|+..+|.|.++. .+++ +.|... . .....|-+ . | +++..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G---~~V~-~~d~~~~~~~~~~~~l~~---------------~-------g--~~~~~ 57 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG---ANVT-VNDGKPFSENPEAQELLE---------------E-------G--IKVIC 57 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC---CEEE-EEcCCCccchhHHHHHHh---------------c-------C--CEEEe
Confidence 47999999999999999998764 3544 444311 1 11111100 0 1 11222
Q ss_pred cCCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCC
Q 023894 164 NRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (275)
Q Consensus 164 ~~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGa 201 (275)
..++.++. +.++|+||-+.|.-.+........+.|.
T Consensus 58 ~~~~~~~~--~~~~d~vV~s~gi~~~~~~~~~a~~~~i 93 (447)
T PRK02472 58 GSHPLELL--DEDFDLMVKNPGIPYTNPMVEKALEKGI 93 (447)
T ss_pred CCCCHHHh--cCcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 22333321 1147999999999888877777777777
No 225
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=66.30 E-value=8.1 Score=37.49 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=24.0
Q ss_pred eeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
..+|+|+| +|.+|+.+++.|..+. .++.+++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G---~~V~~~d 129 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG---YQVRILE 129 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCC---CeEEEeC
Confidence 36899999 9999999999997653 4544443
No 226
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=65.98 E-value=14 Score=33.87 Aligned_cols=135 Identities=17% Similarity=0.183 Sum_probs=66.9
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCce-EEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~-iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
-+|.|+|.|-||..+++.+-.+. .+ ++++... .+.+..+.+ +|. + ..++-+.-
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G---~~~vi~~~~~--~~~~~~~~~----~ga---~--------~~i~~~~~------ 218 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALG---AEDVIGVDPS--PERLELAKA----LGA---D--------FVINSGQD------ 218 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEECCC--HHHHHHHHH----hCC---C--------EEEcCCcc------
Confidence 47999999999999888775543 34 6665432 233322211 221 0 01111100
Q ss_pred CCCCC-Ccc-cccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcch
Q 023894 166 DPLQL-PWA-ELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCML 243 (275)
Q Consensus 166 dP~~i-~w~-~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTT 243 (275)
+++.+ +.. ..++|+||||+|.....+.+-.+++.|.+-+++..+. + +.+-. ....+..+ .+|+. .-.++.
T Consensus 219 ~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~---~-~~~~~--~~~~~~~~-~~i~g-~~~~~~ 290 (339)
T cd08239 219 DVQEIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGG---E-LTIEV--SNDLIRKQ-RTLIG-SWYFSV 290 (339)
T ss_pred hHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCC---C-cccCc--HHHHHhCC-CEEEE-EecCCH
Confidence 00000 011 1379999999997655455667787766433343322 1 11111 01222222 45555 333444
Q ss_pred hhhHHHHHHhhh
Q 023894 244 IKMATLFHFISL 255 (275)
Q Consensus 244 n~LaPvlkvL~~ 255 (275)
..+.-+++.+.+
T Consensus 291 ~~~~~~~~~~~~ 302 (339)
T cd08239 291 PDMEECAEFLAR 302 (339)
T ss_pred HHHHHHHHHHHc
Confidence 566667777665
No 227
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=65.91 E-value=10 Score=33.53 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=22.8
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
|||+|.| .|.+|..+++.|.+.. -+++..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G---~~V~v~ 30 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG---NKIIIG 30 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC---CEEEEE
Confidence 4799997 9999999999998653 355444
No 228
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=65.68 E-value=20 Score=34.02 Aligned_cols=87 Identities=18% Similarity=0.105 Sum_probs=52.5
Q ss_pred eeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec
Q 023894 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN 164 (275)
Q Consensus 86 ~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~ 164 (275)
+-||-|.| +|.+|+.+++.|.+..+ . ++..||-... ||. +.| ++++
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~-~-~v~pVnp~~~---------~~~------------------v~G--~~~y-- 54 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGT-N-IVGGVTPGKG---------GTT------------------VLG--LPVF-- 54 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCC-C-EEEEECCCCC---------CCe------------------EeC--eecc--
Confidence 35899999 99999999999876433 2 4445653300 111 112 1222
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEE
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVII 206 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVII 206 (275)
++.+++|=.. ++|++|-+++...-.+-+..-.+.|+|.+||
T Consensus 55 ~sv~dlp~~~-~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI 95 (291)
T PRK05678 55 NTVAEAVEAT-GANASVIYVPPPFAADAILEAIDAGIDLIVC 95 (291)
T ss_pred CCHHHHhhcc-CCCEEEEEcCHHHHHHHHHHHHHCCCCEEEE
Confidence 2333343110 2788888888777677777777778887665
No 229
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=65.64 E-value=50 Score=30.78 Aligned_cols=137 Identities=12% Similarity=0.157 Sum_probs=66.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
-+|.|.|.|.||..+++++.... .+++++.. +.+.+..+.+ +|. + ..+|-+.-.. .+
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G---~~vi~~~~--~~~~~~~~~~----~Ga-~----------~~i~~~~~~~---~~ 224 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMG---AAVVAIDI--DPEKLEMMKG----FGA-D----------LTLNPKDKSA---RE 224 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEcC--CHHHHHHHHH----hCC-c----------eEecCccccH---HH
Confidence 47999999999999888776543 46665532 2333333322 221 0 0111100000 00
Q ss_pred C-CCC-Cc-cccccc----EEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCc-ccCCCCCCeeeeeC
Q 023894 167 P-LQL-PW-AELGID----IVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE-KDYDHEVANIVRSV 238 (275)
Q Consensus 167 P-~~i-~w-~~~giD----iVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~-~~~~~~~~~IIS~n 238 (275)
. +.+ .+ ...|+| +||||+|.-...+.+-..++.|-+=+++..+.. ..+ ++. +.+..+ ..++. .
T Consensus 225 ~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~--~~~-----~~~~~~~~~~-~~~~g-~ 295 (349)
T TIGR03201 225 VKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMA--KTE-----YRLSNLMAFH-ARALG-N 295 (349)
T ss_pred HHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCC--Ccc-----cCHHHHhhcc-cEEEE-E
Confidence 0 000 01 113554 899999976555556677777653222333321 111 111 122222 35666 5
Q ss_pred CCcchhhhHHHHHHhhh
Q 023894 239 YSCMLIKMATLFHFISL 255 (275)
Q Consensus 239 ASCTTn~LaPvlkvL~~ 255 (275)
-.|+...+..+++.|.+
T Consensus 296 ~~~~~~~~~~~~~~i~~ 312 (349)
T TIGR03201 296 WGCPPDRYPAALDLVLD 312 (349)
T ss_pred ecCCHHHHHHHHHHHHc
Confidence 44555566677777764
No 230
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=65.25 E-value=17 Score=36.36 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.3
Q ss_pred cceeeEEEEC-CChhHHHHHHHHHhCC
Q 023894 84 VAKLKVAING-FGRIGRNFLRCWHGRK 109 (275)
Q Consensus 84 ~~~~kVaInG-fGrIGR~vlR~l~er~ 109 (275)
..+.+|.+.| +|++||.+.+.|.+|.
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrg 103 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRG 103 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCC
Confidence 3567899999 9999999999999886
No 231
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=65.17 E-value=8.8 Score=36.64 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=24.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
.+|+|+|+|.+|+.+++.|.... +++++..+.
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG---~~Viv~~~~ 35 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSG---LNVIVGLRK 35 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCC---CeEEEEECc
Confidence 47999999999999999997643 465544443
No 232
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.04 E-value=19 Score=35.54 Aligned_cols=88 Identities=20% Similarity=0.259 Sum_probs=50.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
.||+|.|+|+.|+.+++.|..+. .++ .+.|..+......+++ .+.-.| +.++...+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G---~~V-~~~D~~~~~~~~~~~~------------------~l~~~g--i~~~~~~~ 70 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG---AKV-TAFDKKSEEELGEVSN------------------ELKELG--VKLVLGEN 70 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC---CEE-EEECCCCCccchHHHH------------------HHHhCC--CEEEeCCC
Confidence 37999999999999999998754 343 3445421110000000 000012 12221121
Q ss_pred -CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 167 -PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 167 -P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
++++ .+.|+||-+.|.-.+.+......+.|.+
T Consensus 71 ~~~~~----~~~dlVV~Spgi~~~~p~~~~a~~~~i~ 103 (458)
T PRK01710 71 YLDKL----DGFDVIFKTPSMRIDSPELVKAKEEGAY 103 (458)
T ss_pred ChHHh----ccCCEEEECCCCCCCchHHHHHHHcCCc
Confidence 3333 2578999999998887777777777874
No 233
>PRK07680 late competence protein ComER; Validated
Probab=64.97 E-value=13 Score=33.94 Aligned_cols=22 Identities=14% Similarity=0.443 Sum_probs=19.6
Q ss_pred eeEEEECCChhHHHHHHHHHhC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er 108 (275)
+||+|+|.|.+|+.+++.|.+.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~ 22 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES 22 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC
Confidence 3799999999999999998764
No 234
>PLN02427 UDP-apiose/xylose synthase
Probab=64.83 E-value=12 Score=35.46 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=27.0
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
+++||.|-| .|.||+.+++.|.++.. .+|+++..
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g--~~V~~l~r 47 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETP--HKVLALDV 47 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCC--CEEEEEec
Confidence 456899999 99999999999987632 47777753
No 235
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=64.76 E-value=26 Score=33.06 Aligned_cols=96 Identities=22% Similarity=0.184 Sum_probs=50.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCc-eEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l-~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
-+|.|+|-|.||...+.++..+. . .++++.. +.+.+..+.+ +|. +.. ++.+. .
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G---~~~Vi~~~~--~~~r~~~a~~----~Ga-~~~----------i~~~~------~ 246 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAG---ASQVVAVDL--NEDKLALARE----LGA-TAT----------VNAGD------P 246 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCcEEEEcC--CHHHHHHHHH----cCC-ceE----------eCCCc------h
Confidence 47999999999998887765542 3 3555532 2333332222 221 101 11100 0
Q ss_pred CC-CCC-CcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 023894 166 DP-LQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (275)
Q Consensus 166 dP-~~i-~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISA 208 (275)
++ +.+ .....++|+||||+|.-...+.+-..++.|-+=|++..
T Consensus 247 ~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 247 NAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred hHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEcc
Confidence 00 000 01112789999999976555666677776654333333
No 236
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=64.26 E-value=48 Score=29.95 Aligned_cols=84 Identities=23% Similarity=0.209 Sum_probs=49.9
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
-+|.|+|.|.+|..+++.+..+. .+++++... .+...++.+ +|. +.. ++- ++
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G---~~vi~~~~~--~~~~~~~~~----~g~---~~~--------~~~--------~~ 208 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTG---PDVVLVGRH--SEKLALARR----LGV---ETV--------LPD--------EA 208 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEcCC--HHHHHHHHH----cCC---cEE--------eCc--------cc
Confidence 47999999999999988876653 466555432 344443332 221 111 010 00
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
+ .++ .++|+++||+|.-...+.+.++++.|.+
T Consensus 209 ~--~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~ 240 (319)
T cd08242 209 E--SEG--GGFDVVVEATGSPSGLELALRLVRPRGT 240 (319)
T ss_pred c--ccC--CCCCEEEECCCChHHHHHHHHHhhcCCE
Confidence 0 122 3799999999874455666778877653
No 237
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=64.16 E-value=11 Score=34.79 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=24.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.||+|+|.|.+|..+++.+.... .+++.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G---~~V~~~d 34 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG---MDVWLLD 34 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC---CeEEEEe
Confidence 47999999999999999887643 5766664
No 238
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=64.02 E-value=7.6 Score=35.46 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=20.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~ 109 (275)
+||+|.|+|.+|..+++.|.+..
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCC
Confidence 58999999999999999998653
No 239
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=63.90 E-value=3.6 Score=36.60 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.0
Q ss_pred eeeEEEECCChhHHHHHHHHHhC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er 108 (275)
..||+|.|.|.+|..++..|...
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~ 43 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA 43 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc
Confidence 46899999999999999988754
No 240
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=63.84 E-value=11 Score=36.34 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=25.6
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+.+|.|.|+|++|+.+++.|.++. .++++|.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~---~~v~vid 261 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEG---YSVKLIE 261 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEEE
Confidence 468999999999999999987653 5777774
No 241
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.77 E-value=11 Score=34.47 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=24.0
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.||+|+|.|.+|..++..+..+. .+++.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g---~~V~~~d 33 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG---YDVVMVD 33 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC---CceEEEe
Confidence 47999999999999999887653 4666554
No 242
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=63.33 E-value=13 Score=34.94 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=28.6
Q ss_pred eeEEEECCChhHHHHHHHHHhCCC-CCceEEEEcCCCChhhhhhh
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKD-SPLDVVVVNDSGGVKNASHL 130 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~-~~l~iVaInd~~~~~~~a~L 130 (275)
+||++.|+|.+|+.+++-|.+... +.-+|++.| + +.+.+.+|
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~-~-~~e~~~~l 44 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTN-R-SEEKRAAL 44 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeC-C-CHHHHHHH
Confidence 589999999999999999987641 224555444 4 33444333
No 243
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=63.29 E-value=8.1 Score=37.04 Aligned_cols=37 Identities=35% Similarity=0.505 Sum_probs=27.9
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCC------CCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~------~~~l~iVaInd~ 121 (275)
++++|+|+|.|-|||.+|..+.... .-.+++|+|.+.
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~ 44 (364)
T KOG0455|consen 2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDS 44 (364)
T ss_pred ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecc
Confidence 4578999999999999998665322 123788888875
No 244
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=61.69 E-value=12 Score=34.94 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=24.6
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
++|+|+|.|.+|..++..|..+. .+|++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G---~~V~v~d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG---HEVRLWDA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC---CeeEEEeC
Confidence 47999999999999999887653 46665643
No 245
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.61 E-value=58 Score=31.76 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=51.0
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCC-hhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~-~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
.+|.|.|.|.+|+.++|.|.++. .++++ .|..+ .+....| +.. ..| ++++...
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g---~~v~~-~d~~~~~~~~~~l-----------------~~~---~~g--i~~~~g~ 59 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG---AEVAA-YDAELKPERVAQI-----------------GKM---FDG--LVFYTGR 59 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEE-EeCCCCchhHHHH-----------------hhc---cCC--cEEEeCC
Confidence 47999999999999999998764 45443 34311 1111111 000 011 2232222
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGa 201 (275)
.++.+ + .+.|+||-+.|.-.+.+......+.|.
T Consensus 60 ~~~~~-~--~~~d~vv~spgi~~~~p~~~~a~~~~i 92 (445)
T PRK04308 60 LKDAL-D--NGFDILALSPGISERQPDIEAFKQNGG 92 (445)
T ss_pred CCHHH-H--hCCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 22221 1 267999999999988887777777776
No 246
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=61.47 E-value=6.7 Score=33.96 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.1
Q ss_pred eEEEECCChhHHHHHHHHHhCC
Q 023894 88 KVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~ 109 (275)
||.|.|.|-+|-.++..|....
T Consensus 1 ~VlViG~GglGs~ia~~La~~G 22 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG 22 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 5899999999999999887543
No 247
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=61.45 E-value=35 Score=36.38 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=50.5
Q ss_pred eEEEECCChhHHHH-HHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 88 KVAINGFGRIGRNF-LRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 88 kVaInGfGrIGR~v-lR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
+|.|.|.|..|... +|.|.++. .++ .+.|.........|-+ .| |+++...+
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G---~~V-~~sD~~~~~~~~~L~~----------------------~g--i~~~~g~~ 57 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRG---YSV-SGSDLSEGKTVEKLKA----------------------KG--ARFFLGHQ 57 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCC---CeE-EEECCCCChHHHHHHH----------------------CC--CEEeCCCC
Confidence 69999999999987 89888764 453 3556522222222211 01 22222223
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
++.++ +.|+||-+.|.-.+.+......+.|.+
T Consensus 58 ~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi~ 89 (809)
T PRK14573 58 EEHVP----EDAVVVYSSSISKDNVEYLSAKSRGNR 89 (809)
T ss_pred HHHcC----CCCEEEECCCcCCCCHHHHHHHHCCCc
Confidence 33332 578999999998887777766666763
No 248
>PRK08818 prephenate dehydrogenase; Provisional
Probab=61.28 E-value=13 Score=36.55 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.2
Q ss_pred eeeEEEECC-ChhHHHHHHHHHhC
Q 023894 86 KLKVAINGF-GRIGRNFLRCWHGR 108 (275)
Q Consensus 86 ~~kVaInGf-GrIGR~vlR~l~er 108 (275)
..+|+|+|+ |.||+.++++|-++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~ 27 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR 27 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc
Confidence 368999998 99999999999754
No 249
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.10 E-value=13 Score=34.33 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=23.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.||+|+|.|.+|+.++..|..+. .+++.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G---~~V~~~d 31 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG---FQTTLVD 31 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC---CcEEEEe
Confidence 37999999999999999987653 4655553
No 250
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=60.60 E-value=5.5 Score=36.41 Aligned_cols=111 Identities=15% Similarity=0.173 Sum_probs=53.0
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhccc-cccccccCceEEEecCCeE-EEC-CeEEEEE
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKY-DSLLGTFKADVKIVDNETI-SVD-GKLIKVV 162 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a~LLky-DS~hG~f~~~v~~~e~~~l-~in-Gk~I~V~ 162 (275)
.||.|.|.|-+|..++..|...... +++.+.+- .++..+..-+-| ++.-|+.+.+... +.| .+| .-.|..+
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~---~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVG--NLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAK---DALTQINPHIAINPI 99 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCC--EEEEEeCCcccccCcccceeeeHhhCCCcHHHHHH---HHHHHHCCCcEEEEE
Confidence 5899999999999999999754322 33223322 222222211112 1223433322110 000 011 1122232
Q ss_pred ecC-CCCCCCcccccccEEEcCCCCCCChhhHHHHH-HcCCC
Q 023894 163 SNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHI-QAGAK 202 (275)
Q Consensus 163 ~~~-dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl-~aGak 202 (275)
..+ +.++++=--.+.|+||+|+..+..+....... +.|.+
T Consensus 100 ~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip 141 (240)
T TIGR02355 100 NAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVP 141 (240)
T ss_pred eccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence 211 11111100126899999999997776555443 34553
No 251
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=60.60 E-value=69 Score=33.89 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=23.7
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
...||+|+|.|.+|+.++..+..+.+ ++|+.+.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G--~~V~l~d 340 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAG--LPVRIKD 340 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcC--CeEEEEe
Confidence 33579999999999999987663322 5655443
No 252
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.44 E-value=65 Score=31.32 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=51.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCC-hhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec-
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGG-VKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN- 164 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~-~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~- 164 (275)
.+|.|.|+|+.|+..++.|..+. .++. +.|... ...... +. .| +.++..
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G---~~v~-~~D~~~~~~~~~~----------------------l~-~g--~~~~~~~ 57 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARG---VTPR-VIDTRITPPGLDK----------------------LP-EN--VERHTGS 57 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC---CeEE-EEcCCCCchhHHH----------------------Hh-cC--CEEEeCC
Confidence 47999999999999999877653 3543 344311 000000 10 11 222221
Q ss_pred CCCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 023894 165 RDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (275)
Q Consensus 165 ~dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIIS 207 (275)
.++..++ +.|+||-+.|.-.+.+......+.|+. |++
T Consensus 58 ~~~~~~~----~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~ 94 (438)
T PRK03806 58 LNDEWLL----AADLIVASPGIALAHPSLSAAADAGIE--IVG 94 (438)
T ss_pred CCHHHhc----CCCEEEECCCCCCCCHHHHHHHHCCCe--EEE
Confidence 1222221 468999999998888888888888985 454
No 253
>PRK06545 prephenate dehydrogenase; Validated
Probab=60.36 E-value=12 Score=35.83 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=21.8
Q ss_pred eEEEECCChhHHHHHHHHHhCCCCCceEE
Q 023894 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVV 116 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~~~~l~iV 116 (275)
+|+|+|+|.||..+++.|..+. ..+.++
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G-~~v~i~ 29 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAG-PDVFII 29 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcC-CCeEEE
Confidence 6999999999999999997643 234443
No 254
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=60.24 E-value=15 Score=34.49 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=24.7
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
+||+|.|.|.+|..++..|.... .++..++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G---~~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKG---VPVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC---CeEEEEeC
Confidence 58999999999999999987653 46655554
No 255
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=60.14 E-value=15 Score=27.76 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.8
Q ss_pred eeEEEECCChhHHHHHHHHHhC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er 108 (275)
.+++|.|+|.+|+.+++.+.+.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 5799999999999999998764
No 256
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=59.97 E-value=59 Score=29.45 Aligned_cols=128 Identities=18% Similarity=0.146 Sum_probs=67.7
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
-+|.|.|.|.+|..+++.+..+. .+++++.+.. +....+-+ +|. + ..++. +.
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~g---~~v~~~~~~~--~~~~~~~~----~g~---~--------~~~~~--------~~ 220 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQG---AEVFAFTRSG--EHQELARE----LGA---D--------WAGDS--------DD 220 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEcCCh--HHHHHHHH----hCC---c--------EEecc--------Cc
Confidence 46899999999999888765543 5776665442 22222211 111 0 00111 00
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCcccCCCCCCeeeeeCCCcchhhh
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVRSVYSCMLIKM 246 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~~~~~~~~IIS~nASCTTn~L 246 (275)
+ .+.++|++++++|.....+.+-++++.|..-+++. ...+ . +++++...+... ..|.. ...-....+
T Consensus 221 ~-----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g-~~~~-~----~~~~~~~~~~~~-~~i~~-~~~~~~~~~ 287 (329)
T cd08298 221 L-----PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAG-IHMS-D----IPAFDYELLWGE-KTIRS-VANLTRQDG 287 (329)
T ss_pred c-----CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEc-CCCC-C----CCccchhhhhCc-eEEEE-ecCCCHHHH
Confidence 0 12378999999887767778888998766433222 1111 1 123333322222 44554 444445556
Q ss_pred HHHHHHhhh
Q 023894 247 ATLFHFISL 255 (275)
Q Consensus 247 aPvlkvL~~ 255 (275)
..+++.+.+
T Consensus 288 ~~~~~l~~~ 296 (329)
T cd08298 288 EEFLKLAAE 296 (329)
T ss_pred HHHHHHHHc
Confidence 666665544
No 257
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=59.92 E-value=14 Score=34.01 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=24.0
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.||+|+|.|.+|+.++..+..+. .+++.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G---~~V~l~d 33 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG---YDVTIVD 33 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC---CeEEEEe
Confidence 47999999999999999887653 4666554
No 258
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=59.38 E-value=29 Score=31.76 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=24.7
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEE-EcCC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVV-VNDS 121 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVa-Ind~ 121 (275)
.+|.|-| .|.||+.+++.|.++. .++++ +++.
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~ 39 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG---YTVKATVRDL 39 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCC
Confidence 4799999 9999999999998764 46654 4444
No 259
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=59.38 E-value=5.3 Score=36.54 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.5
Q ss_pred eeeEEEECCChhHHHHHHHHHhCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~ 109 (275)
.-||.|.|.|-+|-.+++.|..-.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~G 55 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAG 55 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999987543
No 260
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=59.13 E-value=18 Score=30.80 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=25.2
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
.+.||+|.|.|++|+..++.+.... .+++.+.+.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG---a~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG---AEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT----EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC---CEEEeccCC
Confidence 5689999999999999999988754 566666543
No 261
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=59.04 E-value=15 Score=36.54 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=32.7
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LL 131 (275)
.||+|.| +|-||.+.++.+...+ .+++++++.-..+.+.+....
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~-~~f~v~~Laa~~n~~~L~~q~ 46 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNP-DHFQVVALSAGKNVALMVEQI 46 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCc-cccEEEEEEcCCCHHHHHHHH
Confidence 4899999 9999999999876433 358988887655555554443
No 262
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=59.01 E-value=40 Score=31.11 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=25.2
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
.+|.|.|.|.+||.+++.|.++.. -++.++|..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~--~~V~v~~R~ 156 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGV--AEITIVNRT 156 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCC--CEEEEEeCC
Confidence 579999999999999999986542 255556543
No 263
>PRK05442 malate dehydrogenase; Provisional
Probab=58.93 E-value=18 Score=34.74 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=19.9
Q ss_pred ceeeEEEECC-ChhHHHHHHHHHhC
Q 023894 85 AKLKVAINGF-GRIGRNFLRCWHGR 108 (275)
Q Consensus 85 ~~~kVaInGf-GrIGR~vlR~l~er 108 (275)
.|.||+|.|. |.||..++-.|..+
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~ 27 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG 27 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh
Confidence 4679999996 99999988777653
No 264
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=58.63 E-value=12 Score=35.35 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=23.9
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
..+|+|+|.|.||+.+++.|..+.. -++++++
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~--~~V~v~~ 209 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGV--AEITIAN 209 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCC--CEEEEEe
Confidence 4689999999999999999876432 2444454
No 265
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=58.49 E-value=35 Score=32.65 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=22.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
-+|.|.|.|.||...++++-.+. .+++++.
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~G---a~Vi~~~ 209 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFG---LRVTVIS 209 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcC---CeEEEEe
Confidence 46999999999999888775543 4566553
No 266
>PRK05865 hypothetical protein; Provisional
Probab=58.49 E-value=35 Score=37.23 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=24.1
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
|||.|-| .|.||+.+++.|.++. .+++++.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G---~~Vv~l~ 31 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG---HEVVGIA 31 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEE
Confidence 4799999 8999999999998754 4666554
No 267
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=58.29 E-value=31 Score=33.02 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=27.0
Q ss_pred cccceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 82 ETVAKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 82 ~~~~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
..+++.||++.| -|--|.++.|++-.. +.+++-.+.
T Consensus 15 ~~~k~~rv~LlGArGYTGknlv~Lin~H--Pylevthvs 51 (340)
T KOG4354|consen 15 KPEKDIRVGLLGARGYTGKNLVRLINNH--PYLEVTHVS 51 (340)
T ss_pred ccCCCceEEEEeccccchhhHHHHhcCC--CceEEEeee
Confidence 345778999999 899999999988554 346754443
No 268
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=58.01 E-value=5.3 Score=35.34 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~ 109 (275)
.||.|.|.|-+|..+++.|....
T Consensus 22 ~~VlviG~GglGs~ia~~La~~G 44 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAG 44 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcC
Confidence 57999999999999999987654
No 269
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.74 E-value=17 Score=33.38 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=23.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.||+|+|.|.+|..++..+.... .+++..+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G---~~V~l~d 34 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG---YDVLLND 34 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEe
Confidence 57999999999999999887653 4665554
No 270
>PRK06444 prephenate dehydrogenase; Provisional
Probab=57.17 E-value=9.9 Score=34.03 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=24.2
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCC----CCceEEEEcCC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKD----SPLDVVVVNDS 121 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~----~~l~iVaInd~ 121 (275)
+||+|+| .|+.||.+.+.+.+... .+.++|.+.-|
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~~~~DlVilavP 40 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYIKKADHAFLSVP 40 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEECCCCEEEEeCC
Confidence 4899999 89999999998865321 22455555444
No 271
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=56.98 E-value=68 Score=31.37 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=55.6
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
.-+|+|+|+|=.|...+..+-... .+++++....+-...|.-| +-...+|. +
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~l-----------------GAd~~i~~--------~ 218 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKL-----------------GADHVINS--------S 218 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHh-----------------CCcEEEEc--------C
Confidence 358999999988887776654332 5888886552222122111 11122222 1
Q ss_pred CCCCCC-cccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 023894 166 DPLQLP-WAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (275)
Q Consensus 166 dP~~i~-w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~ 210 (275)
+++.+. ..+ -+|++|++.+ ..+-+.+-+.|+.|-+=|++-.|.
T Consensus 219 ~~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 219 DSDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred CchhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCC
Confidence 222111 111 1899999999 888888888888766545565553
No 272
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=56.97 E-value=17 Score=33.62 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=23.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.||+|+|.|.+|..++..|.... .+++.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g---~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG---LQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC---CeEEEEE
Confidence 47999999999999999887543 4666554
No 273
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=56.58 E-value=20 Score=33.08 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=25.9
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
|||-|.| .|.+|+.+.+.+.++. .++++++.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~---~~v~~~~r 32 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG---YEVIATSR 32 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS---EEEEEEST
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC---CEEEEeCc
Confidence 6899999 9999999999987643 68888853
No 274
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=56.44 E-value=4.8 Score=40.78 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=23.9
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
..+|+|+|-|.+|-..+..|..+. .+++++.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G---~~V~v~e 167 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMG---HAVTIFE 167 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CeEEEEe
Confidence 358999999999998888876543 4666665
No 275
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=55.20 E-value=76 Score=32.64 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=20.4
Q ss_pred ceeeEEEECCChhHHHHHHHHHhC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er 108 (275)
.+-||+|.|.|.||...++.+...
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l 187 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL 187 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC
Confidence 357899999999999998887654
No 276
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=55.08 E-value=50 Score=31.05 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=21.9
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCc-eEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l-~iVaIn 119 (275)
-+|.|+|-|.+|..+++++..+. . .++++.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G---~~~Vi~~~ 216 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAG---ASRIIGVD 216 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 47999999999998888765542 4 455553
No 277
>PLN02572 UDP-sulfoquinovose synthase
Probab=55.08 E-value=25 Score=34.76 Aligned_cols=32 Identities=28% Similarity=0.283 Sum_probs=26.0
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+.++|-|-| .|.||+.++|.|.++. .+++++.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~G---~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKRG---YEVAIVD 78 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEe
Confidence 446899999 9999999999998764 4766654
No 278
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=54.98 E-value=19 Score=35.76 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=34.1
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LL 131 (275)
+|+.|.| +|-||.+-|..+...+ .+++++++.-...++.+....
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p-~~f~vval~ag~n~~~l~~q~ 46 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNP-DKFEVVALAAGKNVELLAEQI 46 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCC-CcEEEEEEecCCcHHHHHHHH
Confidence 5899999 9999999999886543 468999987766666655444
No 279
>PRK08655 prephenate dehydrogenase; Provisional
Probab=54.86 E-value=18 Score=36.00 Aligned_cols=30 Identities=30% Similarity=0.615 Sum_probs=23.2
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
|||+|+| +|.+|+.+++.|.++. .++++++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G---~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG---FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC---CEEEEEE
Confidence 4799998 9999999999987643 4555443
No 280
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=54.78 E-value=19 Score=36.32 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=23.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+||+|+|.|.+|+.++..+.... +++++.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G---~~V~v~D 34 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAG---IDVAVFD 34 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC---CeEEEEe
Confidence 58999999999999999887643 5665444
No 281
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=54.66 E-value=21 Score=34.65 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=24.9
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+.||.|.|+|++|+.+++.+.... .++++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG---a~V~v~d 197 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG---ATVTILD 197 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC---CeEEEEE
Confidence 3457999999999999999987653 4665554
No 282
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=54.50 E-value=18 Score=31.61 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=23.8
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
++|.|-| +|.||+.+++.|.++. -+++++.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~---~~v~~~~ 31 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG---HEVRAAV 31 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC---CEEEEEE
Confidence 3688999 9999999999999873 3555554
No 283
>PRK07201 short chain dehydrogenase; Provisional
Probab=54.49 E-value=97 Score=31.41 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=24.0
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
|||-|-| +|.||+.+++.|.+.. ...+|+++..
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~-~g~~V~~l~R 34 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRR-REATVHVLVR 34 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 3799999 9999999999998421 1246665554
No 284
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.35 E-value=26 Score=34.23 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=23.1
Q ss_pred eEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
||.|+|.|..|+..+|.|..+. .++. +.|.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G---~~V~-~~D~ 31 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG---WEVV-VSDR 31 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CEEE-EECC
Confidence 6999999999999999988754 4544 4443
No 285
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=54.34 E-value=27 Score=33.47 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.1
Q ss_pred ceeeEEEECC-ChhHHHHHHHHHhCC
Q 023894 85 AKLKVAINGF-GRIGRNFLRCWHGRK 109 (275)
Q Consensus 85 ~~~kVaInGf-GrIGR~vlR~l~er~ 109 (275)
.|+||+|.|. |.||..++-.|..+.
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCC
Confidence 5789999996 999999988777553
No 286
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.25 E-value=18 Score=35.24 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=49.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
.+|.|+|+|.+|+.+++.|.++. .++++..+. .+ .+.+ .+.. +. .. ..+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G---~~V~g~D~~--~~---~~~~----~~~~-------~~----------~~--~~~ 52 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKG---VYVIGVDKS--LE---ALQS----CPYI-------HE----------RY--LEN 52 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCC---CEEEEEeCC--cc---ccch----hHHH-------hh----------hh--cCC
Confidence 47999999999999999998764 354444322 11 0100 0000 00 00 012
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
++.+. .+.|+||-+.|.-.+.+.+...++.|++
T Consensus 53 ~~~~~---~~~dlvV~s~gi~~~~~~l~~A~~~g~~ 85 (418)
T PRK00683 53 AEEFP---EQVDLVVRSPGIKKEHPWVQAAIASHIP 85 (418)
T ss_pred cHHHh---cCCCEEEECCCCCCCcHHHHHHHHCCCc
Confidence 22221 2468999999998778888888888985
No 287
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=54.06 E-value=58 Score=34.43 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=21.6
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEE
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVV 117 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVa 117 (275)
..||+|+|.|.+|+.++..+..+.+ ++++.
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G--~~V~l 333 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAG--IPVRI 333 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcC--CeEEE
Confidence 3579999999999999976643222 56543
No 288
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=53.72 E-value=22 Score=31.26 Aligned_cols=23 Identities=26% Similarity=0.673 Sum_probs=18.2
Q ss_pred eeEEEECCChhHHHHHHHHHhCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~ 109 (275)
.++.|.|||.+||-+++.|-...
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~G 46 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLG 46 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT
T ss_pred CEEEEeCCCcccHHHHHHHhhCC
Confidence 47999999999999999997653
No 289
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=53.07 E-value=53 Score=29.64 Aligned_cols=90 Identities=21% Similarity=0.169 Sum_probs=49.2
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
-+|.|+| .|.+|..+++++..+. .+++++... .+....+.+ +|. +.. ++.+.-.+
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G---~~vi~~~~s--~~~~~~l~~----~Ga-~~v----------i~~~~~~~---- 200 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKG---CKVIGCAGS--DDKVAWLKE----LGF-DAV----------FNYKTVSL---- 200 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC---CEEEEEeCC--HHHHHHHHH----cCC-CEE----------EeCCCccH----
Confidence 4799999 8999999888776543 466655433 233333322 221 000 11100000
Q ss_pred CCCCC-CcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 166 DPLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 166 dP~~i-~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
.+.+ .+...|+|+|+|++|. ...+.+-.+++.|.+
T Consensus 201 -~~~v~~~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~ 236 (329)
T cd08294 201 -EEALKEAAPDGIDCYFDNVGG-EFSSTVLSHMNDFGR 236 (329)
T ss_pred -HHHHHHHCCCCcEEEEECCCH-HHHHHHHHhhccCCE
Confidence 0000 1122479999999997 455666677776653
No 290
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=53.03 E-value=21 Score=35.34 Aligned_cols=33 Identities=24% Similarity=0.589 Sum_probs=27.5
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
.++||.|-| .|-||+.|++.|.++. .+|+++..
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G---~~V~~ldr 152 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRG---DEVIVIDN 152 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 557999999 9999999999998864 47777753
No 291
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=52.97 E-value=20 Score=35.33 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=25.1
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
.+|+|+|+|.||+.+++.|..... -+++++|..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~--~~V~v~~rs 213 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGV--GKILIANRT 213 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCC--CEEEEEeCC
Confidence 589999999999999999976531 355556543
No 292
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=52.11 E-value=19 Score=35.26 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=26.9
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLL 131 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LL 131 (275)
|||+|+|.|.+|..++.++. .. .++++++- +.+.+..+.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G---~~VigvD~--d~~kv~~l~ 39 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QN---HEVVALDI--LPSRVAMLN 39 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hC---CcEEEEEC--CHHHHHHHH
Confidence 47999999999999996654 32 67777763 344444443
No 293
>PRK08219 short chain dehydrogenase; Provisional
Probab=51.88 E-value=23 Score=30.04 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=23.4
Q ss_pred eeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
++++.|.| .|.||+.+++.|.++ . +++++.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~---~V~~~~ 33 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H---TLLLGG 33 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C---CEEEEe
Confidence 35799999 999999999998875 2 555554
No 294
>PRK07877 hypothetical protein; Provisional
Probab=51.56 E-value=8.5 Score=41.05 Aligned_cols=109 Identities=14% Similarity=0.121 Sum_probs=56.4
Q ss_pred eeeEEEECCChhHHHHHHHHHhCC-CCCceEEEEcCC----CChhhhhhhccccccccccCceEEEecCCeEEECC-eEE
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDS----GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDG-KLI 159 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~-~~~l~iVaInd~----~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inG-k~I 159 (275)
..+|+|+|.| +|-.++..|.... .+++.+ |..- .+++...| . .+.-|+.+..+- ...--.+|- -.|
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~l--vD~D~ve~sNLnRq~~--~-~~diG~~Kv~~a--~~~l~~inp~i~v 178 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRL--ADFDTLELSNLNRVPA--G-VFDLGVNKAVVA--ARRIAELDPYLPV 178 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEE--EcCCEEcccccccccC--C-hhhcccHHHHHH--HHHHHHHCCCCEE
Confidence 4689999999 9999998887543 133332 3221 34444211 1 122354443322 111122342 244
Q ss_pred EEEecC-CCCCCCcccccccEEEcCCCCCCChhhHHHH-HHcCCC
Q 023894 160 KVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKH-IQAGAK 202 (275)
Q Consensus 160 ~V~~~~-dP~~i~w~~~giDiVie~TG~f~~~e~a~~H-l~aGak 202 (275)
..+.+. ++++++=--.++|+||||+..|.++-..... .+.|..
T Consensus 179 ~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP 223 (722)
T PRK07877 179 EVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIP 223 (722)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 444432 3444331113789999999999776555433 334553
No 295
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=51.48 E-value=94 Score=28.99 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=16.4
Q ss_pred eeEEEECCChhHHHHHHHHH
Q 023894 87 LKVAINGFGRIGRNFLRCWH 106 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~ 106 (275)
-+|.|.|.|-||...+.++-
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~ 184 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLK 184 (341)
T ss_pred CEEEEECCCHHHHHHHHHHH
Confidence 47999999999998776553
No 296
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=51.32 E-value=18 Score=36.52 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=25.1
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
.+|+|+|.|.+|..+++.|.++. .+|.+.|-
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G---~~V~v~dr 32 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG---FKISVYNR 32 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC---CeEEEEeC
Confidence 37999999999999999998764 46666653
No 297
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=51.11 E-value=86 Score=29.60 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=21.6
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCc-eEEEE
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l-~iVaI 118 (275)
-+|.|+|.|.||...+.++-.+. . +++++
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G---~~~Vi~~ 216 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAK---ASRIIAI 216 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEE
Confidence 47999999999998887765442 3 56555
No 298
>PLN02778 3,5-epimerase/4-reductase
Probab=51.05 E-value=18 Score=33.43 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.2
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCC
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRK 109 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~ 109 (275)
+++||-|-| .|-||+.+++.|.++.
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g 33 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQG 33 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCC
Confidence 567999999 9999999999998764
No 299
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=50.27 E-value=70 Score=29.89 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=21.9
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCce-EEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~-iVaIn 119 (275)
-+|.|+|.|.||..++.++-.+. .+ ++++.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G---~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAG---ASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 57999999999998887765442 33 65553
No 300
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=50.22 E-value=68 Score=29.34 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=24.4
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
.+|.|.|.|.+||.+++.|.+.. .++..+|.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g---~~v~v~~R 148 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD---CNVIIANR 148 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 47999999999999999988653 36655653
No 301
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=50.07 E-value=26 Score=32.54 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=24.8
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+||.|-| .|.||+.+++.|.++.+ .+|++++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~--~~V~~~~ 33 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTD--WEVYGMD 33 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCC--CeEEEEe
Confidence 4799999 89999999999986532 5777765
No 302
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=49.66 E-value=26 Score=32.87 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=25.9
Q ss_pred eeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
++||-|-| .|-||+.+++.|.++. .+|+++.
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g---~~V~~~d 46 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLN---QTVIGLD 46 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC---CEEEEEe
Confidence 35899999 9999999999998764 4777774
No 303
>PLN02206 UDP-glucuronate decarboxylase
Probab=49.54 E-value=32 Score=34.14 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=26.4
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+.+||.|-| +|-||+.+++.|.++. .+|+++.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G---~~V~~ld 150 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG---DSVIVVD 150 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc---CEEEEEe
Confidence 347899999 9999999999998864 4777664
No 304
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=49.25 E-value=26 Score=33.41 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=25.4
Q ss_pred eeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
++||.|-| .|-||+.+++.|.++. .+|+++.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G---~~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG---HYIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC---CEEEEEE
Confidence 46899999 8999999999998763 4666664
No 305
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=49.21 E-value=19 Score=36.37 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=25.0
Q ss_pred eEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
+|+|+|+|++|+.+++.|.++. .++++.|..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G---~~V~v~drt 31 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG---FTVSVYNRT 31 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC---CeEEEEeCC
Confidence 4899999999999999998764 577666543
No 306
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=49.13 E-value=30 Score=33.01 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.2
Q ss_pred ceeeEEEECC-ChhHHHHHHHHHhCC
Q 023894 85 AKLKVAINGF-GRIGRNFLRCWHGRK 109 (275)
Q Consensus 85 ~~~kVaInGf-GrIGR~vlR~l~er~ 109 (275)
+|.||+|.|- |.||..+++.|..+.
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~ 26 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGD 26 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCc
Confidence 3689999995 999999999887643
No 307
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=49.07 E-value=66 Score=30.26 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=67.4
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
.+|.|+|.|.||..+++++-.+. .+++++... .+.+..+++ .+|. +..++ ....-.+
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G---~~vi~~~~~--~~~~~~~~~---~~Ga---~~~i~-------~~~~~~~----- 238 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMG---HHVTVISSS--DKKREEALE---HLGA---DDYLV-------SSDAAEM----- 238 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC---CeEEEEeCC--HHHHHHHHH---hcCC---cEEec-------CCChHHH-----
Confidence 46889999999999888775543 456555433 222222221 1221 10100 0000000
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCccc-CCCCCCeeeeeCCCcchhh
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKD-YDHEVANIVRSVYSCMLIK 245 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~~~-~~~~~~~IIS~nASCTTn~ 245 (275)
... . .++|+||||+|.-...+.+-..++.|.+-|.+..+.. ..+ ++... +... .+|.. .-.++..-
T Consensus 239 -~~~--~-~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~--~~~-----~~~~~~~~~~-~~i~g-~~~~~~~~ 305 (357)
T PLN02514 239 -QEA--A-DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINT--PLQ-----FVTPMLMLGR-KVITG-SFIGSMKE 305 (357)
T ss_pred -HHh--c-CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCC--CCc-----ccHHHHhhCC-cEEEE-EecCCHHH
Confidence 011 1 2689999999965455556667776664344433321 111 22211 2222 45655 44444444
Q ss_pred hHHHHHHhhhhcCceE
Q 023894 246 MATLFHFISLLTNLAS 261 (275)
Q Consensus 246 LaPvlkvL~~~fgI~~ 261 (275)
+.-++..+.+. .++.
T Consensus 306 ~~~~~~~~~~g-~l~~ 320 (357)
T PLN02514 306 TEEMLEFCKEK-GLTS 320 (357)
T ss_pred HHHHHHHHHhC-CCcC
Confidence 55666665553 4543
No 308
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=48.91 E-value=27 Score=31.93 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=24.5
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
|||.|-| .|-||+.+++.|.++. .+++++.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC---CeEEEEe
Confidence 4799999 9999999999998753 4776664
No 309
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=48.81 E-value=1.1e+02 Score=28.13 Aligned_cols=87 Identities=18% Similarity=0.202 Sum_probs=46.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
-.|.|.|.|.+|+.+++.+.... .+++++... .+...++-+ +|. + ..++.+....
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~G---~~v~~~~~~--~~~~~~~~~----~g~---~--------~vi~~~~~~~----- 225 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKALG---AEVTAFSRS--PSKKEDALK----LGA---D--------EFIATKDPEA----- 225 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CeEEEEcCC--HHHHHHHHH----cCC---c--------EEecCcchhh-----
Confidence 46888899999998887765432 465555332 122222211 120 0 0011100000
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGa 201 (275)
...+ ..++|+|++|+|.-...+.+-.+++.+.
T Consensus 226 ~~~~---~~~~d~v~~~~g~~~~~~~~~~~l~~~G 257 (337)
T cd05283 226 MKKA---AGSLDLIIDTVSASHDLDPYLSLLKPGG 257 (337)
T ss_pred hhhc---cCCceEEEECCCCcchHHHHHHHhcCCC
Confidence 0111 2479999999997644566667777655
No 310
>PRK04148 hypothetical protein; Provisional
Probab=48.80 E-value=31 Score=29.33 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=30.5
Q ss_pred CHHHHHHhhccccccCCCCCccccccceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 59 SFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
++.+|+...+... ...||.++|.| -|..+++.|.+.. .++++|.
T Consensus 3 ~i~~~l~~~~~~~-------------~~~kileIG~G-fG~~vA~~L~~~G---~~ViaID 46 (134)
T PRK04148 3 TIAEFIAENYEKG-------------KNKKIVELGIG-FYFKVAKKLKESG---FDVIVID 46 (134)
T ss_pred HHHHHHHHhcccc-------------cCCEEEEEEec-CCHHHHHHHHHCC---CEEEEEE
Confidence 3667776655321 22579999999 7877888887653 6888885
No 311
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=48.78 E-value=37 Score=33.64 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.4
Q ss_pred ceeeEEEECC-ChhHHHHHHHHHhCC
Q 023894 85 AKLKVAINGF-GRIGRNFLRCWHGRK 109 (275)
Q Consensus 85 ~~~kVaInGf-GrIGR~vlR~l~er~ 109 (275)
.++||+|.|. |+||-.++-.|..+.
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcc
Confidence 5789999997 999999998877654
No 312
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=48.69 E-value=20 Score=36.49 Aligned_cols=33 Identities=15% Similarity=0.323 Sum_probs=26.7
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
..+||++|+|..|+.+++.|.++. +++.+-|-.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G---~~V~V~NRt 38 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKG---FPISVYNRT 38 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCC---CeEEEECCC
Confidence 357999999999999999998764 577766643
No 313
>PRK06988 putative formyltransferase; Provisional
Probab=48.58 E-value=26 Score=33.28 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=24.1
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEE
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
++||++.|++.+|...|+.|.++. +++++|
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~~~---~~i~~V 31 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLARG---VDVALV 31 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCC---CCEEEE
Confidence 479999999999999999998753 455444
No 314
>PLN02240 UDP-glucose 4-epimerase
Probab=48.57 E-value=31 Score=31.76 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=25.8
Q ss_pred ceeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 85 AKLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 85 ~~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+..+|.|-| +|.||+.+++.|.++. .+|+++.
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~ 36 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAG---YKVVVID 36 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 346899999 9999999999998764 4777664
No 315
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=48.53 E-value=8.7 Score=35.25 Aligned_cols=102 Identities=17% Similarity=0.192 Sum_probs=51.3
Q ss_pred eEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhh--hccccccccccCceEEEecCCeEEEC-CeEEEEEe
Q 023894 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASH--LLKYDSLLGTFKADVKIVDNETISVD-GKLIKVVS 163 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a~--LLkyDS~hG~f~~~v~~~e~~~l~in-Gk~I~V~~ 163 (275)
||.|+|.|-+|-.+++.|.....+++. .|.+- .+...+.. |++. +.-|+.+.++-.. .--.+| +-.|....
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~--ivD~D~Ve~sNLnRQflf~~-~dvGk~Ka~va~~--~l~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIH--VIDMDTIDVSNLNRQFLFRP-KDIGRPKSEVAAE--AVNDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEE--EEeCCEEcchhhccccCCCh-hhCChHHHHHHHH--HHHHHCCCCEEEEEe
Confidence 589999999999999998765433333 23322 23322222 3322 2345554433210 000111 11222222
Q ss_pred cC-CC-CCCC---cccccccEEEcCCCCCCChhhHHHH
Q 023894 164 NR-DP-LQLP---WAELGIDIVIEGTGVFVDGPGAGKH 196 (275)
Q Consensus 164 ~~-dP-~~i~---w~~~giDiVie~TG~f~~~e~a~~H 196 (275)
.+ ++ ..++ | .+.|+||+|+..+..+......
T Consensus 76 ~~i~~~~~~~~~f~--~~~DvVi~a~Dn~~aR~~ln~~ 111 (234)
T cd01484 76 NKVGPEQDFNDTFF--EQFHIIVNALDNIIARRYVNGM 111 (234)
T ss_pred ccCChhhhchHHHH--hCCCEEEECCCCHHHHHHHHHH
Confidence 11 01 1111 3 3789999999988776655543
No 316
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=48.40 E-value=21 Score=29.00 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=19.9
Q ss_pred eeEEEECCChhHHHHHHHHHhC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er 108 (275)
.+|+|.|.|.+|+.+++.|...
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~ 41 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAEL 41 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHC
Confidence 5899999999999999999765
No 317
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=48.22 E-value=11 Score=36.30 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.6
Q ss_pred eeeEEEECCChhHHHHHHHHHhCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~ 109 (275)
..+|.|.|.|-+|-.++..|....
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~G 51 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAG 51 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999987544
No 318
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=48.09 E-value=28 Score=33.77 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=29.7
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhh
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN 126 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~ 126 (275)
++||||.|. ++|+..++++.+.. ..+++++|-|. +.+.
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~-~~~eLvaV~d~-~~er 40 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAP-ERFELAGILAQ-GSER 40 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCC-CCcEEEEEEcC-CHHH
Confidence 479999999 68999999886542 25899999988 4443
No 319
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=47.84 E-value=29 Score=32.64 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=20.1
Q ss_pred eeEEEECCChhHHHHHHHHHhCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~ 109 (275)
|||+|+|.|.+|..++..|..+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g 23 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRG 23 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC
Confidence 48999999999999999887653
No 320
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=47.58 E-value=24 Score=35.04 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=24.9
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
++||+|+|.|.+|..++.+|.+ . .++++++-
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~---~~V~g~D~ 36 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-S---RQVVGFDV 36 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-C---CEEEEEeC
Confidence 4789999999999999998654 2 68777753
No 321
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=47.28 E-value=30 Score=33.48 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=24.9
Q ss_pred eeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.++|.|.| .|.||+.+++.|.++. .+++++.
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G---~~V~~l~ 91 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG---YNVVAVA 91 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 46899999 9999999999998764 4665554
No 322
>PRK10537 voltage-gated potassium channel; Provisional
Probab=47.22 E-value=32 Score=34.00 Aligned_cols=30 Identities=20% Similarity=0.121 Sum_probs=24.1
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
-.|.|.|+|++|+.+++.|.++. .++++|.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g---~~vvVId 270 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRG---QAVTVIV 270 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCC---CCEEEEE
Confidence 45999999999999999987653 4666664
No 323
>PLN02827 Alcohol dehydrogenase-like
Probab=47.13 E-value=85 Score=29.93 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=18.2
Q ss_pred eeEEEECCChhHHHHHHHHHhC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er 108 (275)
-+|.|+|.|.||..+++++-.+
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~ 216 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLR 216 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999988876554
No 324
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=46.91 E-value=65 Score=31.31 Aligned_cols=44 Identities=23% Similarity=0.241 Sum_probs=28.5
Q ss_pred ccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCC-CCCCCCCeEEeecCc
Q 023894 177 IDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP-AKGADIPTYVVGVNE 224 (275)
Q Consensus 177 iDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP-~k~~DiP~iV~GVN~ 224 (275)
-|++|...-.-...+-.+.|++-|| +|+++- ++ |+.+.|.-+|.
T Consensus 231 e~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~--dvd~~vk~~~~ 275 (351)
T COG5322 231 EDILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPK--DVDTSVKNVGG 275 (351)
T ss_pred cceEEEEeecCCCceechhhccCCe--EEEcCCcCc--ccccccccCCC
Confidence 3455555444455566789999999 888764 33 45566666664
No 325
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.73 E-value=32 Score=31.71 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=22.6
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEE
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
.||+|.|.|.+|+.++..+.... .+++.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G---~~V~l~ 32 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG---FDVTIY 32 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC---CeEEEE
Confidence 47999999999999999887543 355444
No 326
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.70 E-value=75 Score=29.98 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=15.8
Q ss_pred eeEEEECCCh-hHHHHHHHHHhC
Q 023894 87 LKVAINGFGR-IGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInGfGr-IGR~vlR~l~er 108 (275)
.+|.|.|.|. +||.++..|.++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~ 182 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNA 182 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC
Confidence 4688888776 888877777654
No 327
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=46.60 E-value=14 Score=37.30 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.5
Q ss_pred cceeeEEEECC-ChhHHHHHHHHHhC
Q 023894 84 VAKLKVAINGF-GRIGRNFLRCWHGR 108 (275)
Q Consensus 84 ~~~~kVaInGf-GrIGR~vlR~l~er 108 (275)
..++||+|.|. |.||-.++-.|..+
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhc
Confidence 35799999997 99999999888765
No 328
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=46.47 E-value=88 Score=28.88 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.4
Q ss_pred eeEEEECCChhHHHHHHHHHhC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er 108 (275)
-+|.|+|-|.+|...++++-.+
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~ 183 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVAL 183 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999988877654
No 329
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=46.46 E-value=38 Score=31.75 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=22.4
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCc-eEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l-~iVaIn 119 (275)
-+|.|.|.|-||..+++++-.+. . +++++.
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G---~~~vi~~~ 219 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRG---ASRIIGVD 219 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 47999999999999888775542 3 566553
No 330
>PLN02740 Alcohol dehydrogenase-like
Probab=46.31 E-value=41 Score=31.93 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=22.4
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCc-eEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l-~iVaIn 119 (275)
-+|.|+|.|.||...++++-.+. . +++++.
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G---~~~Vi~~~ 230 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARG---ASKIIGVD 230 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CCcEEEEc
Confidence 47999999999999888776543 3 455553
No 331
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=46.09 E-value=31 Score=35.60 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.2
Q ss_pred cceeeEEEEC-CChhHHHHHHHHHhCC
Q 023894 84 VAKLKVAING-FGRIGRNFLRCWHGRK 109 (275)
Q Consensus 84 ~~~~kVaInG-fGrIGR~vlR~l~er~ 109 (275)
++.|||-|-| .|.||+.+.+.|.++.
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g 404 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQG 404 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCC
Confidence 3567999999 9999999999987653
No 332
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=46.04 E-value=29 Score=34.16 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=24.1
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
.+|+|.|.|.||+.+++.|..+.. -+++++|.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~--~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGV--RKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCC--CeEEEEeC
Confidence 589999999999999999876531 14555544
No 333
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.00 E-value=34 Score=33.75 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=21.9
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.-.|||.|.|-+|-.++.-.-.+. --+|++|.
T Consensus 193 GstvAVfGLG~VGLav~~Gaka~G--AsrIIgvD 224 (375)
T KOG0022|consen 193 GSTVAVFGLGGVGLAVAMGAKAAG--ASRIIGVD 224 (375)
T ss_pred CCEEEEEecchHHHHHHHhHHhcC--cccEEEEe
Confidence 356999999999987776443322 24777764
No 334
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=45.38 E-value=87 Score=27.85 Aligned_cols=90 Identities=22% Similarity=0.227 Sum_probs=48.2
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCce-EEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~-iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
-+|.|+|.|.+|..+++++.... .+ ++++... .+....+-+ +|. + . .++.+.-..
T Consensus 131 ~~vlI~g~g~vg~~~~~la~~~g---~~~v~~~~~~--~~~~~~~~~----~g~---~-~-------~~~~~~~~~---- 186 (312)
T cd08269 131 KTVAVIGAGFIGLLFLQLAAAAG---ARRVIAIDRR--PARLALARE----LGA---T-E-------VVTDDSEAI---- 186 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEECCC--HHHHHHHHH----hCC---c-e-------EecCCCcCH----
Confidence 47999999999999988876543 45 6555433 223221111 111 0 0 011100000
Q ss_pred CCCCC-Cc-ccccccEEEcCCCCCCChhhHHHHHHcCC
Q 023894 166 DPLQL-PW-AELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (275)
Q Consensus 166 dP~~i-~w-~~~giDiVie~TG~f~~~e~a~~Hl~aGa 201 (275)
.+.+ ++ ...++|+++||.|.-...+.+.++++.+.
T Consensus 187 -~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g 223 (312)
T cd08269 187 -VERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERG 223 (312)
T ss_pred -HHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCC
Confidence 0000 01 12479999999986545566677887655
No 335
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.36 E-value=1.6e+02 Score=28.75 Aligned_cols=86 Identities=20% Similarity=0.302 Sum_probs=51.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEec-C
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSN-R 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~-~ 165 (275)
.+|.|.|.|.+|+..++.|..... ..++. +.|........ +.|. .| ++++.. .
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~-~~~v~-~~D~~~~~~~~---------------------~~l~-~g--~~~~~g~~ 61 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQP-QLTVK-VIDTRETPPGQ---------------------EQLP-ED--VELHSGGW 61 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCC-CCeEE-EEeCCCCchhH---------------------HHhh-cC--CEEEeCCC
Confidence 479999999999999998886531 23433 44541100000 0010 01 233222 2
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
++++++ +.|+||-+.|+-.+.+......+.|.+
T Consensus 62 ~~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi~ 94 (438)
T PRK04663 62 NLEWLL----EADLVVTNPGIALATPEIQQVLAAGIP 94 (438)
T ss_pred ChHHhc----cCCEEEECCCCCCCCHHHHHHHHCCCc
Confidence 455552 578999999998888777777777764
No 336
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=45.24 E-value=12 Score=39.59 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=21.2
Q ss_pred eeeEEEECCChhHHHHHHHHHhCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~ 109 (275)
..||.|.|.|-+|-.++|.|....
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~G 361 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWG 361 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcC
Confidence 478999999999999999998654
No 337
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=45.15 E-value=32 Score=28.26 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=52.6
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
.+|.|.|.|-+||.++..|.++... ++..+|.. .+.+..|.+ . + ++..+.+....+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~--~i~i~nRt--~~ra~~l~~--~-~-----------------~~~~~~~~~~~~ 68 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAK--EITIVNRT--PERAEALAE--E-F-----------------GGVNIEAIPLED 68 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSS--EEEEEESS--HHHHHHHHH--H-H-----------------TGCSEEEEEGGG
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCC--EEEEEECC--HHHHHHHHH--H-c-----------------CccccceeeHHH
Confidence 5899999999999999999887422 36667754 333333321 0 0 111233332222
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC--EEEEeC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK--KVIITA 208 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak--kVIISA 208 (275)
.. -.....|+||-||+.-... --..+++.+-+ +++++-
T Consensus 69 ~~---~~~~~~DivI~aT~~~~~~-i~~~~~~~~~~~~~~v~Dl 108 (135)
T PF01488_consen 69 LE---EALQEADIVINATPSGMPI-ITEEMLKKASKKLRLVIDL 108 (135)
T ss_dssp HC---HHHHTESEEEE-SSTTSTS-STHHHHTTTCHHCSEEEES
T ss_pred HH---HHHhhCCeEEEecCCCCcc-cCHHHHHHHHhhhhceecc
Confidence 21 1123689999999986542 22345554433 477753
No 338
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=44.74 E-value=1.9e+02 Score=26.24 Aligned_cols=29 Identities=24% Similarity=0.153 Sum_probs=21.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCce-EEEE
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVV 118 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~-iVaI 118 (275)
-.|.|+|-|.+|..+++++-.+. .+ ++++
T Consensus 167 ~~VlV~g~g~vg~~~~~la~~~g---~~~v~~~ 196 (343)
T cd08235 167 DTVLVIGAGPIGLLHAMLAKASG---ARKVIVS 196 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEE
Confidence 47999999999999888765442 45 5444
No 339
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=44.67 E-value=1.1e+02 Score=28.69 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=21.6
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCc-eEEEE
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l-~iVaI 118 (275)
-+|.|+|-|.||...++++-.+. . +++++
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G---~~~vi~~ 217 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAG---ASRIIGI 217 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEE
Confidence 47999999999999888775542 3 45555
No 340
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=44.66 E-value=17 Score=38.70 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=23.8
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
...+|+|+|.|.+|..++-.+.... ++++.+.
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G---~~V~l~d 365 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKG---LKTVLKD 365 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCC---CcEEEec
Confidence 3357999999999999998776542 6765443
No 341
>PRK07326 short chain dehydrogenase; Provisional
Probab=44.63 E-value=39 Score=29.00 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=24.0
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|.|.| .|.||+.+++.|.++. .+++++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g---~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEG---YKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC---CEEEEee
Confidence 5799999 9999999999998753 4666554
No 342
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=43.90 E-value=29 Score=33.63 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=22.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
|||.+.|.|.|||.++-.++.+.+ .+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g--~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNG--FEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCC--CeEEEEE
Confidence 589999999999977655555543 5666665
No 343
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.80 E-value=36 Score=32.71 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=23.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.||+|+|.|.+|+.++..+.... ++++..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG---~~V~l~D 37 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG---LDVVAWD 37 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC---CeEEEEe
Confidence 47999999999999998877543 6755443
No 344
>PRK07411 hypothetical protein; Validated
Probab=43.68 E-value=10 Score=37.13 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=53.2
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC--CChhhhhh--hccccccccccCceEEEecCCeE-EECC-eEE
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASH--LLKYDSLLGTFKADVKIVDNETI-SVDG-KLI 159 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~--~~~~~~a~--LLkyDS~hG~f~~~v~~~e~~~l-~inG-k~I 159 (275)
.-+|.|+|.|-+|-.++..|.......+- +-|. .+...+-. |+..+. -|+.+..... +.| .+|- -.|
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~---lvD~D~ve~sNL~RQ~l~~~~d-vG~~Ka~~a~---~~l~~~np~v~v 110 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIG---IVDFDVVDSSNLQRQVIHGTSW-VGKPKIESAK---NRILEINPYCQV 110 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEE---EECCCEecccccCcCcccChHH-CCCcHHHHHH---HHHHHHCCCCeE
Confidence 35899999999999999988754322222 3333 22222221 222222 2332221110 111 1221 123
Q ss_pred EEEecC-CCCCC-CcccccccEEEcCCCCCCChhhHHHH-HHcCCC
Q 023894 160 KVVSNR-DPLQL-PWAELGIDIVIEGTGVFVDGPGAGKH-IQAGAK 202 (275)
Q Consensus 160 ~V~~~~-dP~~i-~w~~~giDiVie~TG~f~~~e~a~~H-l~aGak 202 (275)
..+..+ ++++. ++ -.+.|+||+|+..+.++...... .+.|..
T Consensus 111 ~~~~~~~~~~~~~~~-~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 111 DLYETRLSSENALDI-LAPYDVVVDGTDNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred EEEecccCHHhHHHH-HhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 333211 22221 11 12689999999999777655433 334543
No 345
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=43.62 E-value=25 Score=33.55 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=23.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEE
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
|+++.+|+||.|.++.+.+..+. -++|+-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g---hdvV~y 29 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG---HDVVGY 29 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC---CeEEEE
Confidence 47999999999999999888764 466654
No 346
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=43.57 E-value=97 Score=27.27 Aligned_cols=86 Identities=20% Similarity=0.169 Sum_probs=47.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCce-EEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~-iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
-+|.|+|.|.+|..+++.+..+. .+ ++++... .+....+-+ +|..+.. ++..
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g---~~~vi~~~~~--~~~~~~~~~----~g~~~~~----------~~~~-------- 151 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAG---AREVVGVDPD--AARRELAEA----LGPADPV----------AADT-------- 151 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCcEEEECCC--HHHHHHHHH----cCCCccc----------cccc--------
Confidence 47999999999999888776543 34 6665432 233321112 2211101 0000
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
+.. +...++|++|+++|.-...+....+++.+..
T Consensus 152 -~~~--~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~ 185 (277)
T cd08255 152 -ADE--IGGRGADVVIEASGSPSALETALRLLRDRGR 185 (277)
T ss_pred -hhh--hcCCCCCEEEEccCChHHHHHHHHHhcCCcE
Confidence 000 1234799999998865445556667766553
No 347
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=43.45 E-value=57 Score=31.20 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=19.4
Q ss_pred eeEEEECC-ChhHHHHHHHHHhCC
Q 023894 87 LKVAINGF-GRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInGf-GrIGR~vlR~l~er~ 109 (275)
.||+|.|. |.||..++..|..+.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~ 24 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGE 24 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC
Confidence 48999996 999999998887643
No 348
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=43.34 E-value=1.3e+02 Score=27.53 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.1
Q ss_pred eeEEEECCChhHHHHHHHHHhC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er 108 (275)
-+|.|+|.|.+|..+++++...
T Consensus 163 ~~VlI~g~g~vg~~~~~la~~~ 184 (341)
T cd08262 163 EVALVIGCGPIGLAVIAALKAR 184 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999888776554
No 349
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=43.24 E-value=29 Score=32.24 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=20.4
Q ss_pred EEEECCChhHHHHHHHHHhCCCCCceEEEE
Q 023894 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 89 VaInGfGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
|+|.|.|.+|..++.++..+.- . +++.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l-~-eV~L~ 28 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKEL-G-DVVLL 28 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCC-c-EEEEE
Confidence 6899999999999887765431 1 65544
No 350
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=43.09 E-value=12 Score=36.40 Aligned_cols=113 Identities=16% Similarity=0.230 Sum_probs=54.1
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhcccc-ccccccCceEEEecCCeEEECC-eEEEEE
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYD-SLLGTFKADVKIVDNETISVDG-KLIKVV 162 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a~LLkyD-S~hG~f~~~v~~~e~~~l~inG-k~I~V~ 162 (275)
..+|.|.|.|-+|..++..|...... ++..+.+- .++..+..-+-|+ +.-|+.....-. ..--.+|. -.|..+
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg--~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~--~~l~~~np~v~i~~~ 116 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVG--TITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAA--ERLKEIQPDIRVNAL 116 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEeCCEEccccccccccCChhHCCCHHHHHHH--HHHHHHCCCCeeEEe
Confidence 35799999999999999998764322 33334332 2222222211121 112332221110 00001221 122222
Q ss_pred ecC-CCCCCCcccccccEEEcCCCCCCChhhHHHH-HHcCCC
Q 023894 163 SNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKH-IQAGAK 202 (275)
Q Consensus 163 ~~~-dP~~i~w~~~giDiVie~TG~f~~~e~a~~H-l~aGak 202 (275)
..+ +++++.---.+.|+||+|+..+.++...... .+.|..
T Consensus 117 ~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP 158 (370)
T PRK05600 117 RERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTP 158 (370)
T ss_pred eeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 111 2222211113789999999999887655543 334654
No 351
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=42.98 E-value=37 Score=27.60 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=22.0
Q ss_pred EEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 89 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 89 VaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
|+|+|.|.||..++-.|.+.. .++..+-..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g---~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG---HDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT---CEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCC---CceEEEEcc
Confidence 789999999999998887632 355445433
No 352
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=42.10 E-value=2.1e+02 Score=30.39 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=22.9
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.||+|+|.|.+|+.++..+... + ++++.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G--~~V~l~d 343 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-G--VPVIMKD 343 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-C--CeEEEEe
Confidence 5799999999999999877643 2 5655443
No 353
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=42.09 E-value=1.2e+02 Score=27.42 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=49.0
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
.+|.|.|-|-+|+.+++++..+. .+++++... .+...++-+ +| .+ ..++.+.....
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G---~~v~~~~~~--~~~~~~~~~----~g-~~----------~~~~~~~~~~~---- 219 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMG---FETVAITRS--PDKRELARK----LG-AD----------EVVDSGAELDE---- 219 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCC--HHHHHHHHH----hC-Cc----------EEeccCCcchH----
Confidence 47999998889999888776543 466655433 223333311 11 00 00111100000
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIIS 207 (275)
.. . ..++|+|++|.|.-.....+-.+++.+..-+.++
T Consensus 220 -~~--~-~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 220 -QA--A-AGGADVILVTVVSGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred -Hh--c-cCCCCEEEECCCcHHHHHHHHHhcccCCEEEEEC
Confidence 00 1 1268999999776545556667777655333343
No 354
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=42.06 E-value=50 Score=28.19 Aligned_cols=30 Identities=27% Similarity=0.135 Sum_probs=24.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|.|+|-|++|...++.|.+.. -++++|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g---a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG---AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 58999999999999999988753 3666664
No 355
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=42.05 E-value=1.2e+02 Score=28.56 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=20.7
Q ss_pred ccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 175 ~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
.++|+|+||+|.-...+.+.++++.+.+
T Consensus 253 ~~~d~vld~~g~~~~~~~~~~~l~~~G~ 280 (365)
T cd08278 253 GGVDYALDTTGVPAVIEQAVDALAPRGT 280 (365)
T ss_pred CCCcEEEECCCCcHHHHHHHHHhccCCE
Confidence 4799999999864445666777877664
No 356
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=42.01 E-value=63 Score=23.68 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.6
Q ss_pred eEEEECCChhHHHHHHHHHhCC
Q 023894 88 KVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~ 109 (275)
||+|+|-|.||-.++..|.++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g 22 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG 22 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhC
Confidence 6899999999999999998754
No 357
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=41.74 E-value=1.3e+02 Score=27.85 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=22.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCc-eEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l-~iVaIn 119 (275)
.+|.|.|.|-+|..+++.+-... . .++++.
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~G---~~~v~~~~ 209 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLAG---ARRVIVID 209 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 47999999999999888776542 4 555553
No 358
>PRK14851 hypothetical protein; Provisional
Probab=41.61 E-value=11 Score=40.02 Aligned_cols=98 Identities=19% Similarity=0.191 Sum_probs=50.6
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhh-hccccccccccCceEEEecCCeEEEC-CeEEEEE
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASH-LLKYDSLLGTFKADVKIVDNETISVD-GKLIKVV 162 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a~-LLkyDS~hG~f~~~v~~~e~~~l~in-Gk~I~V~ 162 (275)
..||+|.|.|-+|-.++..|....-+++.+ |..- .++..+-. ++-..+.-|+.+.++- .+.-..+| +-.|+++
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~L--vD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~--~~~l~~inP~~~I~~~ 118 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHI--ADFDQFEPVNVNRQFGARVPSFGRPKLAVM--KEQALSINPFLEITPF 118 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEE--EcCCEecccccccCcCcChhhCCCHHHHHH--HHHHHHhCCCCeEEEE
Confidence 368999999999999999887543333332 3211 22222222 1111233455443332 11112244 2345555
Q ss_pred ecC-CCCCCCcccccccEEEcCCCCC
Q 023894 163 SNR-DPLQLPWAELGIDIVIEGTGVF 187 (275)
Q Consensus 163 ~~~-dP~~i~w~~~giDiVie~TG~f 187 (275)
.+. ++++++---.++|+||||+-.|
T Consensus 119 ~~~i~~~n~~~~l~~~DvVid~~D~~ 144 (679)
T PRK14851 119 PAGINADNMDAFLDGVDVVLDGLDFF 144 (679)
T ss_pred ecCCChHHHHHHHhCCCEEEECCCCC
Confidence 433 3344321113799999999865
No 359
>PRK09291 short chain dehydrogenase; Provisional
Probab=41.36 E-value=47 Score=28.86 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=23.5
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|-|.| .|.||+.+++.|.++. .+++++.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G---~~v~~~~ 33 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG---HNVIAGV 33 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 3689999 9999999999998764 4655543
No 360
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=40.80 E-value=32 Score=27.93 Aligned_cols=107 Identities=15% Similarity=0.186 Sum_probs=52.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhccccc-cccccCceEEEecCCeEEEC-CeEEEEEe
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDS-LLGTFKADVKIVDNETISVD-GKLIKVVS 163 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a~LLkyDS-~hG~f~~~v~~~e~~~l~in-Gk~I~V~~ 163 (275)
.||.|.|.|.+|-.+++.|....-. ++..+.+- ...+.+.+-+-|.. .-|+...+.- .+.--.+| +-.++.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~--~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~--~~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVG--KITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAA--KERLQEINPDVEVEAIP 78 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTS--EEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHH--HHHHHHHSTTSEEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCC--ceeecCCcceeecccccccccccccchhHHHHHH--HHHHHHhcCceeeeeee
Confidence 4899999999999999998754322 33334432 34444443211221 2254333221 00001122 33455543
Q ss_pred cCC-CCCC-CcccccccEEEcCCCCCCChhhHHHHHH
Q 023894 164 NRD-PLQL-PWAELGIDIVIEGTGVFVDGPGAGKHIQ 198 (275)
Q Consensus 164 ~~d-P~~i-~w~~~giDiVie~TG~f~~~e~a~~Hl~ 198 (275)
..- ++++ .+- .+.|+||+|+..+..+..+.....
T Consensus 79 ~~~~~~~~~~~~-~~~d~vi~~~d~~~~~~~l~~~~~ 114 (135)
T PF00899_consen 79 EKIDEENIEELL-KDYDIVIDCVDSLAARLLLNEICR 114 (135)
T ss_dssp SHCSHHHHHHHH-HTSSEEEEESSSHHHHHHHHHHHH
T ss_pred cccccccccccc-cCCCEEEEecCCHHHHHHHHHHHH
Confidence 221 1111 111 278999999988766655554443
No 361
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=40.59 E-value=28 Score=34.81 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.3
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~ 109 (275)
...+|||.|||-.|+.+++-+....
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aG 75 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAG 75 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcC
Confidence 3578999999999999999887643
No 362
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=40.50 E-value=53 Score=27.92 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=24.5
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
.+|.|.| .|.||+.+++.|.++. .+++.+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g---~~v~~~~r 37 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADG---AKVVIYDS 37 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 5799999 9999999999998764 35555543
No 363
>PRK08017 oxidoreductase; Provisional
Probab=40.25 E-value=50 Score=28.65 Aligned_cols=30 Identities=23% Similarity=0.161 Sum_probs=23.3
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|.|.| .|.||+.+++.|.++. .+++++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g---~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG---YRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 3699999 7999999999998753 3555553
No 364
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=39.78 E-value=44 Score=31.26 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=19.0
Q ss_pred eeeEEEECCChhHHHHHHHHHhC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er 108 (275)
.+||+|.|.|.||-.+.-.|.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~ 24 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA 24 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC
Confidence 36899999999999888777643
No 365
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=39.57 E-value=2.4e+02 Score=29.31 Aligned_cols=59 Identities=25% Similarity=0.294 Sum_probs=40.4
Q ss_pred cccCCcCHHHHHHhhccccccCCCCCccccccceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 53 TGARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
..+++..+.-|++.-+.+.... .. -+..+|.|=|||-+|.-..+.|++... .+|+|.|.
T Consensus 225 ~~ATG~GV~~y~e~~~~~~~~~--~~-----~kgkr~~i~G~Gnv~~~aa~~l~~~G~---kvvavsD~ 283 (514)
T KOG2250|consen 225 YEATGRGVVYYVEAILNDANGK--KG-----IKGKRVVIQGFGNVGGHAAKKLSEKGA---KVVAVSDS 283 (514)
T ss_pred ccccchhHHHHHHHHHHhccCC--CC-----cCceEEEEeCCCchHHHHHHHHHhcCC---EEEEEEcC
Confidence 3456677888888777665211 11 134689999999999999998887543 55666653
No 366
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=39.53 E-value=2.8e+02 Score=25.23 Aligned_cols=139 Identities=18% Similarity=0.147 Sum_probs=69.2
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
-.|.|+|.|.+|+.+++++.... .+++++....+.++...+-+ +|. + .+ +.+.-... +.
T Consensus 166 ~~vlI~g~g~~g~~~~~la~~~G---~~v~~~~~~~~~~~~~~~~~----~g~-~-~~----------~~~~~~~~--~~ 224 (306)
T cd08258 166 DTVVVFGPGPIGLLAAQVAKLQG---ATVVVVGTEKDEVRLDVAKE----LGA-D-AV----------NGGEEDLA--EL 224 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CEEEEECCCCCHHHHHHHHH----hCC-c-cc----------CCCcCCHH--HH
Confidence 36888999999999988876653 56666532222333322222 121 0 00 00000000 00
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCc-ccCCCCCCeeeeeCCCcchhh
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE-KDYDHEVANIVRSVYSCMLIK 245 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~-~~~~~~~~~IIS~nASCTTn~ 245 (275)
...+ ....++|+++||.|.-...+...++++.+.+-+.+.... + .+ + .+|- ..+... .+|.. +-.++...
T Consensus 225 l~~~-~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~--~~-~--~~~~~~~~~~~-~~i~g-~~~~~~~~ 295 (306)
T cd08258 225 VNEI-TDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFG-P--LA-A--SIDVERIIQKE-LSVIG-SRSSTPAS 295 (306)
T ss_pred HHHH-cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccC-C--CC-c--ccCHHHHhhcC-cEEEE-EecCchHh
Confidence 0000 112378999999875334445567777655433344332 1 11 1 1121 122223 56776 66677777
Q ss_pred hHHHHHHhhh
Q 023894 246 MATLFHFISL 255 (275)
Q Consensus 246 LaPvlkvL~~ 255 (275)
+.-+++.+++
T Consensus 296 ~~~~~~~~~~ 305 (306)
T cd08258 296 WETALRLLAS 305 (306)
T ss_pred HHHHHHHHhc
Confidence 7777777664
No 367
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=39.52 E-value=43 Score=30.16 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=23.8
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
+|.|.| .|.||+.+++.|.++. .+++++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g---~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG---EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC---CEEEEEEe
Confidence 689999 8999999999998764 36665543
No 368
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=39.28 E-value=45 Score=29.69 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=24.8
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
+|-|-| .|-||+.+++.|.++. .+++++...
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g---~~V~~~~r~ 33 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG---HDVRGLDRL 33 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC---CeEEEEeCC
Confidence 488999 8999999999998763 577666643
No 369
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=39.25 E-value=1.4e+02 Score=31.78 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=24.0
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
...+|+|+|-|.+|+.++-++.... ++++.+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d 343 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKG---TPIVMKD 343 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCC---CeEEEEe
Confidence 3357999999999999998876542 6755443
No 370
>PLN02583 cinnamoyl-CoA reductase
Probab=39.09 E-value=53 Score=30.01 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=23.4
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
.+|.|-| .|.||+.+++.|.++. .+++++
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G---~~V~~~ 36 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRG---YTVHAA 36 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEE
Confidence 4699999 9999999999998764 466554
No 371
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=39.03 E-value=47 Score=33.60 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=24.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
|||+|+|.|.+|-.++-+|.++. ...+++++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g-~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKC-PDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCCeEEEEE
Confidence 68999999999998888777642 236777774
No 372
>PLN00198 anthocyanidin reductase; Provisional
Probab=38.97 E-value=48 Score=30.61 Aligned_cols=30 Identities=13% Similarity=0.167 Sum_probs=23.8
Q ss_pred eeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 86 ~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
+++|.|-| .|-||+.+++.|.++. .+|+++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g---~~V~~~ 39 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKG---YAVNTT 39 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCC---CEEEEE
Confidence 46899999 9999999999998764 355433
No 373
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=38.96 E-value=61 Score=27.52 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=23.2
Q ss_pred EEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 89 VaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
|-|.| +|-||+.+++.|.++. .+++++...
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g---~~v~~~~~~ 31 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG---HEVIVLSRS 31 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---TEEEEEESC
T ss_pred EEEEccCCHHHHHHHHHHHHcC---Ccccccccc
Confidence 57889 9999999999999875 355555544
No 374
>PRK07023 short chain dehydrogenase; Provisional
Probab=38.88 E-value=48 Score=28.76 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=22.8
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
+++.|-| .|.||+.+++.|.++. .+++.+
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G---~~v~~~ 31 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG---IAVLGV 31 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC---CEEEEE
Confidence 4799999 9999999999988753 355444
No 375
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=38.85 E-value=65 Score=29.31 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=17.2
Q ss_pred EEEECC-ChhHHHHHHHHHhC
Q 023894 89 VAINGF-GRIGRNFLRCWHGR 108 (275)
Q Consensus 89 VaInGf-GrIGR~vlR~l~er 108 (275)
|+|.|- |.+|..++..+...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~ 21 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG 21 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC
Confidence 689998 99999999887754
No 376
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=38.43 E-value=2.4e+02 Score=24.01 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=22.1
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
-+|.|+|.|.+|+.+++.+.... .+++++.
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g---~~v~~~~ 165 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAG---ARVIVTD 165 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEc
Confidence 47999997779999988776543 4665554
No 377
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=38.37 E-value=1.5e+02 Score=27.34 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=22.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCc-eEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l-~iVaIn 119 (275)
-+|.|+|.|.+|+..++.+..+. . .++++.
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~G---~~~v~~~~ 204 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAAG---ASKIIVSE 204 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEEC
Confidence 47999999999999988876543 4 455553
No 378
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=38.35 E-value=47 Score=32.48 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=26.5
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCC----CCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRK----DSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~----~~~l~iVaInd~ 121 (275)
++++|||+|-|-||-.-+-++.+.. .+..++-++.|.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 4579999999999987776666532 344666667664
No 379
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=38.31 E-value=52 Score=30.70 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=24.6
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
++|-|-| .|.||+.+++.|.++. .+++++.
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G---~~V~~~~ 41 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRG---YTVHATL 41 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 5899999 9999999999998764 4666653
No 380
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=38.03 E-value=49 Score=29.43 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=22.7
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
||.|.| .|.||+.+++.|.++. .+++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g---~~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG---RVVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC---CEEEEeC
Confidence 578999 8999999999998753 3665553
No 381
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=37.96 E-value=1.4e+02 Score=26.73 Aligned_cols=88 Identities=17% Similarity=0.139 Sum_probs=46.3
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
+|.|+| .|.+|..+++++..+. .+++++.. +.+...++.++ |. + ..++.+... ..
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~--~~~~~~~~~~~----g~-~----------~~~~~~~~~----~~ 204 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLG---YTVVALTG--KEEQADYLKSL----GA-S----------EVLDREDLL----DE 204 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcC---CEEEEEeC--CHHHHHHHHhc----CC-c----------EEEcchhHH----HH
Confidence 699999 6999999888776543 45544432 23344444322 21 0 011111000 00
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGa 201 (275)
... .+...++|+|+|++|. ...+.+..++..+.
T Consensus 205 ~~~-~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g 237 (325)
T cd05280 205 SKK-PLLKARWAGAIDTVGG-DVLANLLKQTKYGG 237 (325)
T ss_pred HHH-HhcCCCccEEEECCch-HHHHHHHHhhcCCC
Confidence 000 0122368999999997 35556666776544
No 382
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=37.65 E-value=1.6e+02 Score=32.05 Aligned_cols=37 Identities=24% Similarity=0.490 Sum_probs=28.5
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCC-CCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRK-DSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~-~~~l~iVaInd~ 121 (275)
+++||.|+|-|..|-.+++.|.++. ....+|+.|.+-
T Consensus 2 ~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e 39 (847)
T PRK14989 2 SKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEE 39 (847)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 3468999999999998888876543 245788888764
No 383
>PRK07236 hypothetical protein; Provisional
Probab=37.50 E-value=52 Score=31.15 Aligned_cols=33 Identities=15% Similarity=-0.020 Sum_probs=25.0
Q ss_pred cceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 84 ~~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+++++|.|+|-|..|-.++..|..+. ++++.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G---~~v~v~E 36 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAG---WDVDVFE 36 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCC---CCEEEEe
Confidence 45689999999999998888886542 5555554
No 384
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=37.45 E-value=1.7e+02 Score=28.22 Aligned_cols=34 Identities=15% Similarity=-0.077 Sum_probs=23.1
Q ss_pred ccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 023894 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (275)
Q Consensus 175 ~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISA 208 (275)
.|+|+|||++|.-.....+-.+++.|-+.+++..
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 4799999999875555666677775554455543
No 385
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=37.10 E-value=1.6e+02 Score=27.73 Aligned_cols=30 Identities=17% Similarity=-0.005 Sum_probs=22.0
Q ss_pred eeEEEECC-ChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGf-GrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
-+|.|+|- |.||...++++-.+. .+++++.
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G---~~Vi~~~ 190 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHG---CYVVGSA 190 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC---CEEEEEc
Confidence 47999995 999999888765543 4666553
No 386
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=37.02 E-value=51 Score=29.34 Aligned_cols=31 Identities=29% Similarity=0.602 Sum_probs=23.7
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+|.|-| +|-||+.+++.|.++. ...+++++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~-~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH-PDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC-CCCEEEEec
Confidence 578999 9999999999887642 235776664
No 387
>PRK06153 hypothetical protein; Provisional
Probab=36.92 E-value=24 Score=35.19 Aligned_cols=134 Identities=13% Similarity=-0.009 Sum_probs=61.8
Q ss_pred cCCcCHHHHHHhhccccccCCCCCccccccceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC-CChhhhhhhc-c
Q 023894 55 ARDASFFDAVTAQLTPKVAAGSVPVKKETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLL-K 132 (275)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~-~~~~~~a~LL-k 132 (275)
.++.+++.|........ +. .... ..-...+|+|+|.|=+|-.++..|....- -+++.|..- .+...+-..+ .
T Consensus 149 ~~~~svf~y~dt~s~R~-~i-~~~q--~kL~~~~VaIVG~GG~GS~Va~~LAR~GV--geI~LVD~D~Ve~SNLnRQ~ga 222 (393)
T PRK06153 149 AEEDSVFNYPDTASSRA-GI-GALS--AKLEGQRIAIIGLGGTGSYILDLVAKTPV--REIHLFDGDDFLQHNAFRSPGA 222 (393)
T ss_pred cccCCceehhhhhcccc-Ch-HHHH--HHHhhCcEEEEcCCccHHHHHHHHHHcCC--CEEEEECCCEeccccccccccc
Confidence 44566777766544332 11 0000 11133689999999999999999875432 244444332 2222221111 1
Q ss_pred c-cccccccCceEEEecCCeEEECCeEEEEEecC-CCCCCCcccccccEEEcCCCCCCChhhHHHH
Q 023894 133 Y-DSLLGTFKADVKIVDNETISVDGKLIKVVSNR-DPLQLPWAELGIDIVIEGTGVFVDGPGAGKH 196 (275)
Q Consensus 133 y-DS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~-dP~~i~w~~~giDiVie~TG~f~~~e~a~~H 196 (275)
| ...-|+-...+++-.+.--.+|- .|..+.+. ++++++.- .+.|+||+|+..+..+..+-..
T Consensus 223 f~~~DvGk~~~KVevaa~rl~~in~-~I~~~~~~I~~~n~~~L-~~~DiV~dcvDn~~aR~~ln~~ 286 (393)
T PRK06153 223 ASIEELREAPKKVDYFKSRYSNMRR-GIVPHPEYIDEDNVDEL-DGFTFVFVCVDKGSSRKLIVDY 286 (393)
T ss_pred CCHhHcCCcchHHHHHHHHHHHhCC-eEEEEeecCCHHHHHHh-cCCCEEEEcCCCHHHHHHHHHH
Confidence 1 11122200111110000001221 22222211 34444321 3789999999998877655443
No 388
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.91 E-value=61 Score=28.12 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=23.7
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
..|.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g---~~vi~~~ 33 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAG---FDLAIND 33 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 4588889 9999999999998764 4666654
No 389
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.84 E-value=40 Score=33.05 Aligned_cols=22 Identities=14% Similarity=0.510 Sum_probs=19.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~ 109 (275)
|+|.|.|+|+.|+.++|.|. +.
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G 22 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KF 22 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CC
Confidence 47999999999999999998 54
No 390
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=36.82 E-value=94 Score=28.71 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.0
Q ss_pred EEC-CChhHHHHHHHHHhCC
Q 023894 91 ING-FGRIGRNFLRCWHGRK 109 (275)
Q Consensus 91 InG-fGrIGR~vlR~l~er~ 109 (275)
|-| .|.+|+.+++.|.++.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g 21 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERG 21 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCC
Confidence 445 9999999999999864
No 391
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=36.70 E-value=1e+02 Score=28.87 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=18.2
Q ss_pred eeEEEECCChhHHHHHHHHHhC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er 108 (275)
-+|.|+|-|.+|..++.++..+
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~ 206 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAA 206 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999988876654
No 392
>PRK08223 hypothetical protein; Validated
Probab=36.30 E-value=22 Score=33.87 Aligned_cols=97 Identities=21% Similarity=0.204 Sum_probs=48.0
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC--CChhhhhhhccc-cccccccCceEEEecCCeEEECC-eEEEE
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS--GGVKNASHLLKY-DSLLGTFKADVKIVDNETISVDG-KLIKV 161 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~--~~~~~~a~LLky-DS~hG~f~~~v~~~e~~~l~inG-k~I~V 161 (275)
.-+|.|+|.|-+|-.++..|....-..+. +-|. .++..+-.-+-| .+.-|+.+.++. .+.-..+|- -.|..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~---lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a--~~~l~~iNP~v~V~~ 101 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFT---IADFDVFELRNFNRQAGAMMSTLGRPKAEVL--AEMVRDINPELEIRA 101 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEE---EEeCCCcchhccccccCcChhHCCCcHHHHH--HHHHHHHCCCCEEEE
Confidence 35799999999999999988754322222 3333 233322221111 122454433221 111112332 13444
Q ss_pred EecC-CCCCCCcccccccEEEcCCCCC
Q 023894 162 VSNR-DPLQLPWAELGIDIVIEGTGVF 187 (275)
Q Consensus 162 ~~~~-dP~~i~w~~~giDiVie~TG~f 187 (275)
+.+. ++++++.--.+.|+||||+..|
T Consensus 102 ~~~~l~~~n~~~ll~~~DlVvD~~D~~ 128 (287)
T PRK08223 102 FPEGIGKENADAFLDGVDVYVDGLDFF 128 (287)
T ss_pred EecccCccCHHHHHhCCCEEEECCCCC
Confidence 3322 3333321123789999999876
No 393
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=36.02 E-value=1.7e+02 Score=28.31 Aligned_cols=32 Identities=28% Similarity=0.218 Sum_probs=22.3
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
-+|.|.|.|.||..++.++..+. .++|.+.+.
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~G---a~~vi~~d~ 218 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLG---AAVVIVGDL 218 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CceEEEeCC
Confidence 46888999999999888776543 454444443
No 394
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.84 E-value=48 Score=33.43 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=21.5
Q ss_pred ceeeEEEECCChhHHHHHHHHHhC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er 108 (275)
++.+|+|+|.|..|-..+|+|.+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC
Confidence 567999999999999999999865
No 395
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=35.77 E-value=2.4e+02 Score=25.37 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=48.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
-+|.|+|-|.+|+.+++++..+. .+++++... .+...++-+ +|. +.. ++.+.-.. .+.
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G---~~V~~~~~s--~~~~~~~~~----~g~-~~~----------~~~~~~~~-~~~- 224 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMG---AAVIAVDIK--EEKLELAKE----LGA-DEV----------LNSLDDSP-KDK- 224 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CEEEEEcCC--HHHHHHHHH----hCC-CEE----------EcCCCcCH-HHH-
Confidence 36888899999999888776553 566666432 233322211 111 000 11000000 000
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
.... ...++|+|+||.|.-...+.+.++++.|.+
T Consensus 225 ~~~~--~~~~~D~vid~~g~~~~~~~~~~~l~~~G~ 258 (338)
T cd08254 225 KAAG--LGGGFDVIFDFVGTQPTFEDAQKAVKPGGR 258 (338)
T ss_pred HHHh--cCCCceEEEECCCCHHHHHHHHHHhhcCCE
Confidence 0001 123789999999865455666788887664
No 396
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=35.66 E-value=62 Score=28.27 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=23.2
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
++|.|.| .|.||+.+++.+.++. .+++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 31 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATG 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEE
Confidence 3688999 9999999999988753 3555553
No 397
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=35.31 E-value=59 Score=30.71 Aligned_cols=142 Identities=15% Similarity=0.212 Sum_probs=70.9
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
+||+|+|.|.+|..++-++..+.. .+++.+.-..++.. +.. +|-.|.. .. +. .+ ..|+. ..|
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~--~~VvlvDi~~~l~~-g~a--~d~~~~~---~~---~~----~~-~~i~~--t~d 63 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKEL--ADLVLLDVVEGIPQ-GKA--LDMYEAS---PV---GG----FD-TKVTG--TNN 63 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCC--CeEEEEeCCCChhH-HHH--Hhhhhhh---hc---cC----CC-cEEEe--cCC
Confidence 489999999999999998876531 25444433222222 111 1221211 00 00 11 12332 233
Q ss_pred CCCCCcccccccEEEcCCCCCCCh------------hhHH---HHH-HcCCCE--EEEeCCCCCCCCCe-EEeecCcccC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDG------------PGAG---KHI-QAGAKK--VIITAPAKGADIPT-YVVGVNEKDY 227 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~------------e~a~---~Hl-~aGakk--VIISAP~k~~DiP~-iV~GVN~~~~ 227 (275)
.+++ .+.|+||-+.|.-... +... +.+ +.+-+. +++|.|. |+=+ +++-.. .+
T Consensus 64 ~~~~----~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~s--g~ 134 (305)
T TIGR01763 64 YADT----ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKS--GF 134 (305)
T ss_pred HHHh----CCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHH--Cc
Confidence 3333 3789999999964432 1111 111 112222 2236664 3211 222111 13
Q ss_pred CCCCCeeeeeCCCcchhhhHHHHHHhhhhcCce
Q 023894 228 DHEVANIVRSVYSCMLIKMATLFHFISLLTNLA 260 (275)
Q Consensus 228 ~~~~~~IIS~nASCTTn~LaPvlkvL~~~fgI~ 260 (275)
. . .+||. .||.---+.+-+.|.+.+|+.
T Consensus 135 ~-~-~rviG---~g~~lds~R~~~~la~~l~v~ 162 (305)
T TIGR01763 135 P-K-ERVIG---QAGVLDSARFRTFIAMELGVS 162 (305)
T ss_pred C-H-HHEEE---eccchHHHHHHHHHHHHhCcC
Confidence 2 2 57877 466666668888888888875
No 398
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=35.21 E-value=52 Score=34.42 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=23.9
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.||+|+|+|.+|+.+++.|..... ..++++++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~-~~~V~~~d 35 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGL-AREVVAVD 35 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC-CCEEEEEE
Confidence 579999999999999999876431 23555554
No 399
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=35.18 E-value=39 Score=31.43 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=19.7
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEE
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVV 117 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVa 117 (275)
++|-|.| +|- ||.+++.|.++. .++++
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g---~~v~~ 28 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG---IEILV 28 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC---CeEEE
Confidence 3677777 898 999999887653 45543
No 400
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=35.07 E-value=17 Score=35.61 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.5
Q ss_pred eeeEEEECCChhHHHHHHHHHhCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~ 109 (275)
..||.|.|.|-+|-.++..|....
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~G 65 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAG 65 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999987543
No 401
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=35.03 E-value=56 Score=33.72 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=26.8
Q ss_pred eeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 86 ~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
++||.|-| +|.||+.+++.|.++. ...+|+++..
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g-~~~~V~~~d~ 40 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNY-PDYKIVVLDK 40 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhC-CCCEEEEEeC
Confidence 46899999 9999999999998752 2367777653
No 402
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=34.81 E-value=2e+02 Score=25.95 Aligned_cols=91 Identities=23% Similarity=0.175 Sum_probs=47.4
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCce-EEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~-iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
-+|.|+|-|.+|+.+++++..+. .. ++++.. +.+....+-++ |. + ..++.+.-.... +
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G---~~~v~~~~~--~~~~~~~~~~~----g~---~--------~~~~~~~~~~~~-~ 219 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNG---ASRVTVAEP--NEEKLELAKKL----GA---T--------ETVDPSREDPEA-Q 219 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEECC--CHHHHHHHHHh----CC---e--------EEecCCCCCHHH-H
Confidence 47899999999999888776543 44 444432 23333333221 11 0 011110000000 0
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
... ...++|++|+|+|.-...+.+-++++.+.+
T Consensus 220 --~~~--~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~ 252 (334)
T cd08234 220 --KED--NPYGFDVVIEATGVPKTLEQAIEYARRGGT 252 (334)
T ss_pred --HHh--cCCCCcEEEECCCChHHHHHHHHHHhcCCE
Confidence 000 123799999999864445566678877653
No 403
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=34.81 E-value=1.9e+02 Score=26.62 Aligned_cols=30 Identities=17% Similarity=0.026 Sum_probs=22.2
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
-+|.|+| .|.+|..+++++-.+. .+++++.
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G---~~Vi~~~ 183 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKG---CYVVGSA 183 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC---CEEEEEe
Confidence 4799999 5999999888776543 4665543
No 404
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=34.22 E-value=35 Score=30.09 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.5
Q ss_pred eeEEEECCChhHHHHHHHHHhC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er 108 (275)
-||.|.|.|-+|-.+++.|...
T Consensus 20 s~VlviG~gglGsevak~L~~~ 41 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLA 41 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHc
Confidence 5799999999999999998754
No 405
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=34.19 E-value=69 Score=30.02 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=17.8
Q ss_pred EEEECCChhHHHHHHHHHhCC
Q 023894 89 VAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 89 VaInGfGrIGR~vlR~l~er~ 109 (275)
|+|.|.|.||..++-.+..+.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~ 21 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKG 21 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcC
Confidence 589999999999998877653
No 406
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=34.13 E-value=1.5e+02 Score=27.03 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=23.0
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCc-eEEEE
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l-~iVaI 118 (275)
-+|.|+|.|.+|..+++.+..+. + .++++
T Consensus 169 ~~vlI~g~g~vg~~~~~~a~~~g---~~~v~~~ 198 (344)
T cd08284 169 DTVAVIGCGPVGLCAVLSAQVLG---AARVFAV 198 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CceEEEE
Confidence 47999999999999988887653 3 56666
No 407
>PRK07577 short chain dehydrogenase; Provisional
Probab=34.08 E-value=73 Score=27.21 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=23.3
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G---~~v~~~~ 34 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLG---HQVIGIA 34 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 3688999 9999999999998764 4555553
No 408
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=34.03 E-value=66 Score=30.87 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=24.6
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
.+|+|.|-|..||.++..+.++. ++++++..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG---~~v~~~d~ 33 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLG---YKVIVLDP 33 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CEEEEEeC
Confidence 47999999999999998887653 67666643
No 409
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=33.86 E-value=15 Score=28.90 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=24.4
Q ss_pred ccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCC
Q 023894 175 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 210 (275)
Q Consensus 175 ~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~ 210 (275)
.++|+||||+|.-...+.+-..++.|.+-|++..+.
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 489999999996555555566666666545555544
No 410
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=33.82 E-value=2e+02 Score=26.13 Aligned_cols=30 Identities=20% Similarity=0.124 Sum_probs=22.0
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
-+|.|+| -|.||..+++++-.+. .+++++.
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G---~~Vi~~~ 170 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKG---CKVVGAA 170 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcC---CEEEEEe
Confidence 4799999 7999999888775542 4665554
No 411
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=33.69 E-value=2.3e+02 Score=25.82 Aligned_cols=92 Identities=23% Similarity=0.200 Sum_probs=47.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCce-EEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~-iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
-+|.|+|.|.+|+.+++++-.+. .+ ++++... .+....+-+ +|. . -.++.+.... +
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~G---~~~v~~~~~~--~~~~~~l~~----~g~-~----------~~~~~~~~~~---~ 217 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKILG---AKRVIAVDID--DEKLAVARE----LGA-D----------DTINPKEEDV---E 217 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEEcCC--HHHHHHHHH----cCC-C----------EEecCccccH---H
Confidence 47999999999999988776543 44 5555433 223322211 111 0 0111110000 0
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
....+. ...++|++++|+|.-...+.+..+++.+.+
T Consensus 218 ~~~~~~-~~~~~d~vld~~g~~~~~~~~~~~l~~~G~ 253 (343)
T cd08236 218 KVRELT-EGRGADLVIEAAGSPATIEQALALARPGGK 253 (343)
T ss_pred HHHHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCE
Confidence 000000 112589999999865455666778877653
No 412
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=33.58 E-value=58 Score=30.14 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.3
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~ 109 (275)
.+|.|-| +|-||+.+++.|.++.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g 25 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET 25 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC
Confidence 4799999 9999999999998764
No 413
>PRK10083 putative oxidoreductase; Provisional
Probab=33.50 E-value=1.4e+02 Score=27.28 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=16.9
Q ss_pred eeEEEECCChhHHHHHHHHH
Q 023894 87 LKVAINGFGRIGRNFLRCWH 106 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~ 106 (275)
-+|.|+|-|-+|..+++.+.
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~ 181 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLK 181 (339)
T ss_pred CEEEEECCCHHHHHHHHHHH
Confidence 47999999999998887664
No 414
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=33.46 E-value=1.7e+02 Score=28.74 Aligned_cols=82 Identities=21% Similarity=0.282 Sum_probs=48.1
Q ss_pred eEEEECCChhHHH-HHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 88 KVAINGFGRIGRN-FLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 88 kVaInGfGrIGR~-vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
+|-++|.|.+|.. ++|.|.++. .++. +.|....+....| + .. | |+++...+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G---~~v~-~~D~~~~~~~~~l-~----------------~~-----g--i~~~~g~~ 52 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRG---YQVS-GSDIAENATTKRL-E----------------AL-----G--IPIYIGHS 52 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCC---CeEE-EECCCcchHHHHH-H----------------HC-----c--CEEeCCCC
Confidence 4778999999997 999998764 4543 4554211111111 1 00 1 22322234
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCC
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGA 201 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGa 201 (275)
++.++ +.|+||-+.|.-.+.+......+.|+
T Consensus 53 ~~~~~----~~d~vV~spgi~~~~p~~~~a~~~~i 83 (448)
T TIGR01082 53 AENLD----DADVVVVSAAIKDDNPEIVEAKERGI 83 (448)
T ss_pred HHHCC----CCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 44443 47889999888877766666666665
No 415
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=33.31 E-value=2.7e+02 Score=25.32 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=20.0
Q ss_pred cccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 176 GIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 176 giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
++|++++|+|.-...+..-++++.+.+
T Consensus 231 ~vd~vld~~g~~~~~~~~~~~L~~~G~ 257 (339)
T cd08232 231 DFDVVFEASGAPAALASALRVVRPGGT 257 (339)
T ss_pred CccEEEECCCCHHHHHHHHHHHhcCCE
Confidence 699999999864445566788887653
No 416
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=33.23 E-value=71 Score=27.41 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=24.0
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|.|-| .|.||+.+++.|.++. .+++++.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g---~~V~~~~ 37 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADG---AEVIVVD 37 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 5799999 9999999999998764 3665553
No 417
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=32.98 E-value=1.1e+02 Score=27.95 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=50.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD 166 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~d 166 (275)
-+|.|.|-|.+|..+.+++-.+. .+++++... .+....+-+ +|. + .++|.+.-.+. +.
T Consensus 165 ~~vlV~g~g~iG~~~~~~a~~~G---~~vi~~~~~--~~~~~~~~~----~g~-~----------~~i~~~~~~~~--~~ 222 (333)
T cd08296 165 DLVAVQGIGGLGHLAVQYAAKMG---FRTVAISRG--SDKADLARK----LGA-H----------HYIDTSKEDVA--EA 222 (333)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEeCC--hHHHHHHHH----cCC-c----------EEecCCCccHH--HH
Confidence 37999999999999888876653 466666433 223333322 121 0 11221110000 00
Q ss_pred CCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 023894 167 PLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (275)
Q Consensus 167 P~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIIS 207 (275)
. ..| .++|+++|++|.-...+.+-+++..|..-|.+.
T Consensus 223 ~--~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 223 L--QEL--GGAKLILATAPNAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred H--Hhc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEe
Confidence 0 112 268999999875445555667777665333343
No 418
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=32.97 E-value=1.6e+02 Score=27.00 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=23.1
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|.|+|.|.+|+.+++.+..+. ++++++.
T Consensus 167 ~~vlV~g~g~vg~~~~~~a~~~G---~~vi~~~ 196 (345)
T cd08260 167 EWVAVHGCGGVGLSAVMIASALG---ARVIAVD 196 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEe
Confidence 47999999999999888776543 5766664
No 419
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=32.91 E-value=60 Score=29.76 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=19.8
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~ 109 (275)
|||-|-| .|-||+.+.+.|.++.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g 24 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG 24 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC
Confidence 4799999 8999999999987653
No 420
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=32.75 E-value=72 Score=28.43 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=22.7
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
||.|.| .|-||+.+++.|.++. .+++++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g---~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG---HEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC---CeEEEEe
Confidence 578999 9999999999998754 3555553
No 421
>PRK05086 malate dehydrogenase; Provisional
Probab=32.72 E-value=75 Score=30.14 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=17.7
Q ss_pred eeEEEECC-ChhHHHHHHHHHh
Q 023894 87 LKVAINGF-GRIGRNFLRCWHG 107 (275)
Q Consensus 87 ~kVaInGf-GrIGR~vlR~l~e 107 (275)
+||+|.|- |+||..++..|..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 58999995 9999999987743
No 422
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=32.55 E-value=1.9e+02 Score=26.58 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=18.2
Q ss_pred eeEEEECCChhHHHHHHHHHhC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er 108 (275)
-+|.|+|.|.||..+++++-.+
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~ 189 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLR 189 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4799999999999988877544
No 423
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=32.46 E-value=1.8e+02 Score=26.18 Aligned_cols=30 Identities=17% Similarity=0.075 Sum_probs=22.5
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
-+|.|+| .|.+|..+++++.... .+++++.
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~G---~~vi~~~ 177 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLLG---ARVVGIA 177 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHcC---CEEEEEe
Confidence 4799999 7999999888776543 4666554
No 424
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=32.26 E-value=77 Score=27.54 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.5
Q ss_pred eeEEEECCChh-HHHHHHHHHhCC
Q 023894 87 LKVAINGFGRI-GRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInGfGrI-GR~vlR~l~er~ 109 (275)
.+|.|.|.|.+ |+.+++.|.++.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g 68 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRN 68 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCC
Confidence 58999999985 998999987753
No 425
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.83 E-value=83 Score=26.72 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=20.3
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~ 109 (275)
.+|.|.| .|-||+.+++.|.++.
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g 30 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAG 30 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC
Confidence 5799999 9999999999998764
No 426
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=31.71 E-value=49 Score=31.62 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=19.4
Q ss_pred eeEEEECC-ChhHHHHHHHHHhCC
Q 023894 87 LKVAINGF-GRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInGf-GrIGR~vlR~l~er~ 109 (275)
+||+|.|. |.||..++-.|..+.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~ 24 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP 24 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 58999997 999999998876543
No 427
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=31.50 E-value=1.5e+02 Score=26.55 Aligned_cols=96 Identities=17% Similarity=0.145 Sum_probs=50.5
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
-+|.|+| -|.+|..+++++..+. .+++++... .+....+.+ .|. + . +++.+... .+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~~--~~~~~~~~~----~g~-~-~---------v~~~~~~~---~~ 204 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLG---YEVVASTGK--ADAADYLKK----LGA-K-E---------VIPREELQ---EE 204 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC---CeEEEEecC--HHHHHHHHH----cCC-C-E---------EEcchhHH---HH
Confidence 4799999 4999999888876553 466655433 222222211 111 0 0 11111100 00
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIISA 208 (275)
.-. .+...++|+|+||+|. ...+.+-.++..+..-+.+..
T Consensus 205 ~~~--~~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 205 SIK--PLEKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred HHH--hhccCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEEee
Confidence 000 1123478999999997 455666677776553333443
No 428
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=31.30 E-value=39 Score=29.81 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=20.0
Q ss_pred eeEEEECCChhHHHHHHHHHhCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~ 109 (275)
.||.|.|.|-+|-.+++.|....
T Consensus 22 s~VlIiG~gglG~evak~La~~G 44 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSG 44 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcC
Confidence 57999999999999999997543
No 429
>PRK08163 salicylate hydroxylase; Provisional
Probab=31.27 E-value=74 Score=29.92 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=22.9
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEE
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
++.+|+|+|-|..|-.++..|.... +++..+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g---~~v~v~ 33 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQG---IKVKLL 33 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCC---CcEEEE
Confidence 4579999999999998888775432 454444
No 430
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=31.19 E-value=69 Score=32.62 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=24.1
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.||+|+|.|..|+-++..+.... ++++..+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG---~~V~l~d 35 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAG---HQVLLYD 35 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCC---CeEEEEe
Confidence 47999999999999999887543 5766554
No 431
>PRK15076 alpha-galactosidase; Provisional
Probab=31.17 E-value=44 Score=33.29 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=11.5
Q ss_pred eeEEEECCChhHH
Q 023894 87 LKVAINGFGRIGR 99 (275)
Q Consensus 87 ~kVaInGfGrIGR 99 (275)
+||+|+|-|.+|-
T Consensus 2 ~KIaIIGaGsvg~ 14 (431)
T PRK15076 2 PKITFIGAGSTVF 14 (431)
T ss_pred cEEEEECCCHHHh
Confidence 5899999999983
No 432
>PTZ00325 malate dehydrogenase; Provisional
Probab=31.17 E-value=51 Score=31.68 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=19.8
Q ss_pred ceeeEEEECC-ChhHHHHHHHHHhC
Q 023894 85 AKLKVAINGF-GRIGRNFLRCWHGR 108 (275)
Q Consensus 85 ~~~kVaInGf-GrIGR~vlR~l~er 108 (275)
++.||+|.|. |+||..++..|..+
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~ 31 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQN 31 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcC
Confidence 3469999997 99999999877644
No 433
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.15 E-value=85 Score=26.98 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=23.8
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G---~~V~~~~ 36 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG---ARVVVTD 36 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 4799999 9999999999998764 3555553
No 434
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=30.97 E-value=78 Score=29.53 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.4
Q ss_pred eeEEEECCChhHHHHHHHHHhC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er 108 (275)
|||+|.|.|.+|..+...|.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~ 22 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK 22 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC
Confidence 4799999999999999988754
No 435
>PRK12320 hypothetical protein; Provisional
Probab=30.97 E-value=68 Score=34.26 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=24.9
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
|||.|-| .|.||+.+++.|.++. .+++++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G---~~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG---HTVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEeC
Confidence 4799999 9999999999998764 47666653
No 436
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=30.80 E-value=74 Score=29.47 Aligned_cols=29 Identities=17% Similarity=0.156 Sum_probs=23.7
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+|-|-| .|-||+.+++.|.++. .+|+++.
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~ 31 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG---YEVHGLI 31 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 688889 9999999999998764 4776664
No 437
>PRK07454 short chain dehydrogenase; Provisional
Probab=30.51 E-value=91 Score=26.88 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=23.6
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.++-|.| .|.||+.+++.|.++. .+|+++.
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G---~~V~~~~ 37 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAG---WDLALVA 37 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 4688889 8999999999998764 3665554
No 438
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.50 E-value=55 Score=32.27 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=25.0
Q ss_pred cccEEEcCCCCCCChhhHHHHHHcCCCEEEEeC
Q 023894 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITA 208 (275)
Q Consensus 176 giDiVie~TG~f~~~e~a~~Hl~aGakkVIISA 208 (275)
..|++|||||...+.+.+-..++.|=. +++-.
T Consensus 242 ~~d~~~dCsG~~~~~~aai~a~r~gGt-~vlvg 273 (354)
T KOG0024|consen 242 QPDVTFDCSGAEVTIRAAIKATRSGGT-VVLVG 273 (354)
T ss_pred CCCeEEEccCchHHHHHHHHHhccCCE-EEEec
Confidence 389999999999999988888886432 55543
No 439
>PF01232 Mannitol_dh: Mannitol dehydrogenase Rossmann domain; InterPro: IPR013131 Mannitol-1-phosphate 5-dehydrogenase catalyses the NAD-dependent reduction of mannitol-1-phosphate to fructose-6-phosphate [] as part of the phosphoenolpyruvate-dependent phosphotransferase system (PTS). The PTS facilitates the vectorial translocation of metabolisable carbohydrates to form the corresponding sugar phosphates, which are then converted to glycolytic intermediates []. Mannitol 2-dehydrogenase catalyses the NAD-dependent reduction of mannitol to fructose []. Several dehydrogenases have been shown [] to be evolutionary related, including mannitol-1-phosphate 5-dehydrogenase (1.1.1.17 from EC) (gene mtlD), mannitol 2-dehydrogenase (1.1.1.67 from EC) (gene mtlK); mannonate oxidoreductase (1.1.1.57 from EC) (fructuronate reductase) (gene uxuB); Escherichia coli hypothetical proteins ydfI and yeiQ; and yeast hypothetical protein YEL070w. This domain has a Rossmann-type fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1M2W_A 1LJ8_A 3H2Z_A.
Probab=30.50 E-value=64 Score=27.15 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=25.7
Q ss_pred eeEEEECCChhHHH---HHHHHHhCCCCCceEEEEcCC
Q 023894 87 LKVAINGFGRIGRN---FLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 87 ~kVaInGfGrIGR~---vlR~l~er~~~~l~iVaInd~ 121 (275)
|||.-.|.|+++|- ++..++++...+.-+++|+..
T Consensus 1 m~ivhfG~Gnf~Rgh~a~i~~ll~~~~~~~gi~~V~~~ 38 (151)
T PF01232_consen 1 MKIVHFGAGNFHRGHQAFIDELLNQGGFDWGIVDVNPR 38 (151)
T ss_dssp -EEEEES-SHHHHHTHHCHHHHHCCTTTCEEEEECEHC
T ss_pred CcEEEECCcHHHHHHHHHHHHHHhccCCceEEEEEEec
Confidence 58999999999999 776666665556777778765
No 440
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=30.28 E-value=2.3e+02 Score=30.24 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=20.2
Q ss_pred ceeeEEEECCChhHHHHHHHHHhC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er 108 (275)
++.+|.|+|-|..|-.++-+|..+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~ 103 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKK 103 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc
Confidence 568999999999998888877654
No 441
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=29.98 E-value=4e+02 Score=25.12 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=21.5
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
-+|.|.| .|.||..++.++..+. .+++++
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~G---~~vv~~ 224 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAAG---ANPVAV 224 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CeEEEE
Confidence 4799999 5999999887775543 465555
No 442
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=29.71 E-value=92 Score=25.98 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=24.3
Q ss_pred eEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 88 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
++.|+|.|.-|+.+++.|.++ .+++++.=|.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~---g~~vvgfid~ 31 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS---GWEIVGFLDD 31 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCEEEEEEcC
Confidence 478999999999999988643 3677766554
No 443
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=29.70 E-value=3.9e+02 Score=23.56 Aligned_cols=88 Identities=24% Similarity=0.275 Sum_probs=49.6
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
-.|.|.| .|.+|+.+.+.+.... .+++++... .+....+.+ +|. + ....+..
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g---~~v~~~~~~--~~~~~~~~~----~g~---~-------~~~~~~~-------- 186 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAG---AHVVAVVGS--PARAEGLRE----LGA---A-------EVVVGGS-------- 186 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CEEEEEeCC--HHHHHHHHH----cCC---c-------EEEeccc--------
Confidence 4789999 5999999888776543 455555322 233333322 221 0 0001110
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHcCCCEEEEe
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT 207 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~aGakkVIIS 207 (275)
++...++|+++|++|.- ..+.+-++++.+..-|.+.
T Consensus 187 -----~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 187 -----ELSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSVG 222 (305)
T ss_pred -----cccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEEe
Confidence 11223799999999974 4566677888766434443
No 444
>PRK09135 pteridine reductase; Provisional
Probab=29.67 E-value=98 Score=26.48 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=24.1
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|-|-| .|.||+.+++.|.++. .+++.+.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g---~~v~~~~ 37 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAG---YRVAIHY 37 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CEEEEEc
Confidence 4799999 9999999999998763 4666554
No 445
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.35 E-value=96 Score=26.50 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=23.3
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
.++.|.| .|.||+.+++.+.++. .+++.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g---~~v~~~ 35 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEG---AKVVIA 35 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEE
Confidence 4799999 9999999999887653 466655
No 446
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=29.25 E-value=3.3e+02 Score=25.39 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=22.1
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCce-EEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLD-VVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~-iVaIn 119 (275)
-+|.|+|.|.+|+.+++++..+. .. ++++.
T Consensus 189 ~~VlI~g~g~vG~~~~~lak~~G---~~~vi~~~ 219 (367)
T cd08263 189 ETVAVIGVGGVGSSAIQLAKAFG---ASPIIAVD 219 (367)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CCeEEEEe
Confidence 36889999999999988886543 44 55553
No 447
>PRK06046 alanine dehydrogenase; Validated
Probab=29.13 E-value=90 Score=29.61 Aligned_cols=34 Identities=29% Similarity=0.214 Sum_probs=27.5
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
..+|+|.|.|.+||..++.+... ..++.|.|-+.
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~--~~i~~v~v~~r 162 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEV--FDLEEVRVYDR 162 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhh--CCceEEEEECC
Confidence 46899999999999999988643 24777878776
No 448
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=29.03 E-value=90 Score=29.58 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=24.6
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
|+|+|+|-|-+|-..+..|..+. .+|+++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g---~~V~vle~ 31 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG---HEVTVIDR 31 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 48999999999999988877653 57777755
No 449
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=28.77 E-value=3.3e+02 Score=24.18 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=23.2
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|.|+|-|.+|..-++.|.+.. -++++|.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g---a~VtVvs 39 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG---AQLRVIA 39 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC---CEEEEEc
Confidence 48999999999999899888753 2555454
No 450
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=28.66 E-value=3.9e+02 Score=24.46 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=21.8
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCc-eEEEE
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPL-DVVVV 118 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l-~iVaI 118 (275)
-.|.|+|.|.+|+.+++++.... . .++++
T Consensus 165 ~~vlV~g~g~vg~~~~~la~~~G---~~~v~~~ 194 (341)
T cd05281 165 KSVLITGCGPIGLMAIAVAKAAG---ASLVIAS 194 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEE
Confidence 46899999999999888776543 4 45566
No 451
>PRK12827 short chain dehydrogenase; Provisional
Probab=28.60 E-value=99 Score=26.45 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=23.9
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
+++.|.| .|-||+.+++.|.++. .+++.+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g---~~v~~~~ 37 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADG---ADVIVLD 37 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CeEEEEc
Confidence 5799999 9999999999998764 3555543
No 452
>PRK08177 short chain dehydrogenase; Provisional
Probab=28.56 E-value=96 Score=26.63 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=23.4
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
+|.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r 33 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERG---WQVTATVR 33 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCC---CEEEEEeC
Confidence 588999 9999999999998753 36665543
No 453
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=28.45 E-value=68 Score=28.28 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=22.0
Q ss_pred EEEEC-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 89 VaInG-fGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
|-|-| .|.||+.+++.|.++. .+|+++..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG---HEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC---CEEEEEeC
Confidence 34677 9999999999998753 57666654
No 454
>PLN02858 fructose-bisphosphate aldolase
Probab=28.41 E-value=70 Score=36.73 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=25.2
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
..+|+++|+|.+|..+++.|.... +++.+.|
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G---~~V~v~d 354 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSN---FSVCGYD 354 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCC---CEEEEEe
Confidence 368999999999999999988643 5766665
No 455
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=28.37 E-value=95 Score=27.50 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=22.4
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
.+|+|.|||.-|+..+..|-+. .++++.-...
T Consensus 5 k~IAViGyGsQG~a~AlNLrDS---G~~V~Vglr~ 36 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDS---GVNVIVGLRE 36 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHC---C-EEEEEE-T
T ss_pred CEEEEECCChHHHHHHHHHHhC---CCCEEEEecC
Confidence 4799999999999999888654 3676644443
No 456
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=28.36 E-value=1e+02 Score=26.34 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=22.5
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
.+|.|.| .|.||+.+++.|.++. .+++.+
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g---~~vi~~ 32 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDG---YRVIAT 32 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC---CEEEEE
Confidence 3688888 9999999999998753 355555
No 457
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=28.30 E-value=59 Score=27.98 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.6
Q ss_pred eeEEEEC-CChhHHHHHHHHHhC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGR 108 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er 108 (275)
++|.|.| .|-||+.+++.|.++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~ 23 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLER 23 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHh
Confidence 3799999 999999999999876
No 458
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=28.27 E-value=1.2e+02 Score=31.50 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=26.2
Q ss_pred cceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 84 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 84 ~~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+..||+|.|-|..||.+++.+.+.. ++++++.
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG---~~Vi~ld 52 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMG---IKVKVLD 52 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 34568999999999999999887653 6776663
No 459
>PRK12829 short chain dehydrogenase; Provisional
Probab=28.21 E-value=97 Score=26.91 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=23.7
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.++.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g---~~V~~~~ 42 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAG---ARVHVCD 42 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 5799999 9999999999998764 3555444
No 460
>PRK09126 hypothetical protein; Provisional
Probab=28.14 E-value=92 Score=29.26 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=24.9
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
|..+|.|+|-|..|-.++..|..+. ++++.+..
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G---~~v~v~E~ 34 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSG---LKVTLIER 34 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCC---CcEEEEeC
Confidence 5678999999999988888876432 56666653
No 461
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=28.09 E-value=99 Score=26.73 Aligned_cols=29 Identities=28% Similarity=0.211 Sum_probs=22.8
Q ss_pred eeeEEEEC-CChhHHHHHHHHHhCCCCCceEEE
Q 023894 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVV 117 (275)
Q Consensus 86 ~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVa 117 (275)
+.+|.|.| .|-||+.+++.|.++. .+++.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g---~~v~~ 31 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARG---WSVGI 31 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCC---CEEEE
Confidence 45799999 8999999999998754 35543
No 462
>PRK05884 short chain dehydrogenase; Provisional
Probab=28.07 E-value=93 Score=27.07 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=22.1
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
|+.|-| .|.||+.+++.|.++. .+++.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g---~~v~~~ 30 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDG---HKVTLV 30 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCC---CEEEEE
Confidence 688999 8999999999998653 355544
No 463
>PRK05866 short chain dehydrogenase; Provisional
Probab=27.79 E-value=1.1e+02 Score=27.95 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=23.6
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|.|.| .|-||+.+++.|.++. .+++.+.
T Consensus 41 k~vlItGasggIG~~la~~La~~G---~~Vi~~~ 71 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRG---ATVVAVA 71 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 5689999 8999999999998753 4665553
No 464
>PRK07102 short chain dehydrogenase; Provisional
Probab=27.73 E-value=1e+02 Score=26.71 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=22.7
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
++|.|-| .|.||+.+++.|.++. .+++++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G---~~Vi~~ 31 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAG---ARLYLA 31 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcC---CEEEEE
Confidence 3688999 9999999999998753 355544
No 465
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=27.66 E-value=92 Score=29.64 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=24.6
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
.||+|+|-|-+|...++.|.++. .+|+++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g---~~V~vle~ 32 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRG---YQVTVFDR 32 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CeEEEEeC
Confidence 38999999999999998887642 57666643
No 466
>PRK08267 short chain dehydrogenase; Provisional
Probab=27.61 E-value=1e+02 Score=27.00 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=23.0
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
++.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 32 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEG---WRVGAYD 32 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC---CeEEEEe
Confidence 689999 9999999999998764 4655553
No 467
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=27.57 E-value=2.3e+02 Score=25.33 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=23.8
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
-+|.|+| .|.+|..+++++..+. ..++++.+.
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G---~~v~~~~~~ 173 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARG---INVINLVRR 173 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCC---CeEEEEecC
Confidence 4799998 7999999988776553 466666544
No 468
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=27.53 E-value=86 Score=32.56 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=26.2
Q ss_pred eeeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 86 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 86 ~~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
.+||.|-| .|-||+.+++.|.++. ..+|+++..
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~--g~~V~~l~r 348 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDD--NYEVYGLDI 348 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC--CcEEEEEeC
Confidence 36899999 9999999999998642 257777753
No 469
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=27.52 E-value=60 Score=30.02 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.2
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~ 109 (275)
|||.|-| .|-||+.+++.|.++.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g 24 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNT 24 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhC
Confidence 4799999 8999999999998763
No 470
>PF12338 RbcS: Ribulose-1,5-bisphosphate carboxylase small subunit; InterPro: IPR024680 This domain is found in the N-terminal region of the small subunit of ribulose-1,5-bisphosphate in plants. It contains a conserved APF sequence motif. There are also two completely conserved residues (L and P) that may be functionally important.
Probab=27.36 E-value=34 Score=24.22 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=15.6
Q ss_pred cccccccCcccccccccccc
Q 023894 35 LDVAEFAGLRANAGATYATG 54 (275)
Q Consensus 35 ~~~~~~~g~~~~~~~~~~~~ 54 (275)
.-++-|.|||+..+++..++
T Consensus 22 ~mVAPFtGLKS~a~fPvtrK 41 (45)
T PF12338_consen 22 SMVAPFTGLKSTAAFPVTRK 41 (45)
T ss_pred ceeeccccccccccCccccc
Confidence 35789999999998877443
No 471
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=27.35 E-value=1e+02 Score=28.65 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=26.0
Q ss_pred ceeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
+..+|.|+|-|-+|-.++..|.++. .+++.|..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g---~~V~lie~ 34 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRG---LRVLGLDR 34 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCC---CeEEEEec
Confidence 4478999999999999998887763 56666654
No 472
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=27.16 E-value=90 Score=28.24 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 89 VAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 89 VaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
|-|-| .|-||+.+++.|.++. .+++++
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g---~~~v~~ 29 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG---ITDILV 29 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC---CceEEE
Confidence 56788 9999999999998753 344444
No 473
>PLN00203 glutamyl-tRNA reductase
Probab=27.04 E-value=64 Score=33.14 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=25.6
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
..+|+|.|.|.+|+.+++.|..+.. -+++++|..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~--~~V~V~nRs 299 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC--TKMVVVNRS 299 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC--CeEEEEeCC
Confidence 3589999999999999999987531 245556543
No 474
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=27.02 E-value=3e+02 Score=25.04 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=23.1
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
-+|.|+| .|.+|..+++++.... .+++++.+
T Consensus 164 ~~vlI~g~~g~ig~~~~~~a~~~G---~~v~~~~~ 195 (350)
T cd08248 164 KRVLILGGSGGVGTFAIQLLKAWG---AHVTTTCS 195 (350)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CeEEEEeC
Confidence 4799999 7999999988776543 46665543
No 475
>PRK06180 short chain dehydrogenase; Provisional
Probab=26.90 E-value=1.1e+02 Score=27.33 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=23.4
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|.|-| .|-||+.+++.|.++. .+++++.
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G---~~V~~~~ 35 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAG---HRVVGTV 35 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCc---CEEEEEe
Confidence 4688999 9999999999988753 4665554
No 476
>PRK06182 short chain dehydrogenase; Validated
Probab=26.85 E-value=1.1e+02 Score=27.06 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=23.4
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|.|-| .|.||+.+++.|.++. .+++++.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G---~~V~~~~ 34 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQG---YTVYGAA 34 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 4688999 8999999999998754 3665543
No 477
>PRK08618 ornithine cyclodeaminase; Validated
Probab=26.66 E-value=1.1e+02 Score=28.98 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=24.2
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEcCC
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 121 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd~ 121 (275)
..+|+|.|.|.+||..++++.... .++-|.|-+.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~--~~~~v~v~~r 160 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVR--DIERVRVYSR 160 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcC--CccEEEEECC
Confidence 357999999999999998876432 2455555544
No 478
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=26.59 E-value=1.2e+02 Score=25.96 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=23.1
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.++.|.| .|.+|+.+++.|.++. -+++.++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g---~~V~l~~ 59 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG---ARVVLVG 59 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEc
Confidence 5899999 7999999999887643 2555554
No 479
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=26.59 E-value=1.2e+02 Score=26.56 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=23.5
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|-|.| .|.||+.+++.|.++. .+++.+.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g---~~vi~~~ 33 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEG---YRVAVAD 33 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 3688889 8999999999998764 4665554
No 480
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=26.53 E-value=90 Score=29.62 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=19.5
Q ss_pred eeEEEECCChhHHHHHHHHHhCC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRK 109 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~ 109 (275)
+||.|.|.|.||-.+.-.|....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 58999999999999988877543
No 481
>PRK12828 short chain dehydrogenase; Provisional
Probab=26.53 E-value=1.1e+02 Score=25.89 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=23.3
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|.|-| .|.||+.+++.|.++. .+++.+.
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G---~~v~~~~ 38 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARG---ARVALIG 38 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCC---CeEEEEe
Confidence 4699999 9999999999988763 3555553
No 482
>PLN02702 L-idonate 5-dehydrogenase
Probab=26.49 E-value=2.8e+02 Score=25.78 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=20.4
Q ss_pred cccEEEcCCCCCCChhhHHHHHHcCCC
Q 023894 176 GIDIVIEGTGVFVDGPGAGKHIQAGAK 202 (275)
Q Consensus 176 giDiVie~TG~f~~~e~a~~Hl~aGak 202 (275)
++|+||||+|.-...+.+-++++.+..
T Consensus 254 ~~d~vid~~g~~~~~~~~~~~l~~~G~ 280 (364)
T PLN02702 254 GIDVSFDCVGFNKTMSTALEATRAGGK 280 (364)
T ss_pred CCCEEEECCCCHHHHHHHHHHHhcCCE
Confidence 689999999964455666778887664
No 483
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=26.38 E-value=3e+02 Score=25.21 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=20.0
Q ss_pred cccEEEcCCCCCCChhhHHHHHHcCC
Q 023894 176 GIDIVIEGTGVFVDGPGAGKHIQAGA 201 (275)
Q Consensus 176 giDiVie~TG~f~~~e~a~~Hl~aGa 201 (275)
++|++||++|.-...+.+-.+++.+.
T Consensus 243 ~~d~vid~~g~~~~~~~~~~~l~~~g 268 (350)
T cd08240 243 GVDAVIDFVNNSATASLAFDILAKGG 268 (350)
T ss_pred CCcEEEECCCCHHHHHHHHHHhhcCC
Confidence 79999999996555666777887655
No 484
>PLN02650 dihydroflavonol-4-reductase
Probab=26.38 E-value=95 Score=28.87 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=23.4
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEE
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVV 118 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaI 118 (275)
.+|-|-| .|.||+.+++.|.++. .+|+++
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~G---~~V~~~ 35 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLERG---YTVRAT 35 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHCC---CEEEEE
Confidence 4799999 9999999999998764 466543
No 485
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=26.35 E-value=1.2e+02 Score=27.21 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=22.2
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEcC
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND 120 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaInd 120 (275)
.+|+|+|-|..|-.++..|..+. ++++.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G---~~v~i~E~ 32 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG---IDVTIIER 32 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT---CEEEEEES
T ss_pred ceEEEECCCHHHHHHHHHHHhcc---cccccchh
Confidence 68999999999999988887653 56555544
No 486
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=26.33 E-value=2.7e+02 Score=25.35 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=37.2
Q ss_pred cccEEEcCCCCCCChhhHHHHHHcCCCEEEEeCCCCCCCCCeEEeecCc-ccCCCCCCeeeeeCCCcchhhhHHHHHHhh
Q 023894 176 GIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNE-KDYDHEVANIVRSVYSCMLIKMATLFHFIS 254 (275)
Q Consensus 176 giDiVie~TG~f~~~e~a~~Hl~aGakkVIISAP~k~~DiP~iV~GVN~-~~~~~~~~~IIS~nASCTTn~LaPvlkvL~ 254 (275)
++|+++|++|.-...+.+..+++.+..-+++..+.. ..+ +|. ..+... ..+.. .+.+.-..+..+++.+.
T Consensus 237 ~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~--~~~-----~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ 307 (345)
T cd08287 237 GADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHG--GVE-----LDVRELFFRN-VGLAG-GPAPVRRYLPELLDDVL 307 (345)
T ss_pred CCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCC--CCc-----cCHHHHHhcc-eEEEE-ecCCcHHHHHHHHHHHH
Confidence 789999999865455666777776543233333321 111 121 222222 34555 55555556666666554
No 487
>PTZ00357 methyltransferase; Provisional
Probab=26.04 E-value=2.1e+02 Score=31.43 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=23.8
Q ss_pred ceeeEEEECCChhHHHHHHHHHh--CCCCCceEEEEcCC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHG--RKDSPLDVVVVNDS 121 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~e--r~~~~l~iVaInd~ 121 (275)
..+.|.|+|-|| |-+|-++|-. ..+-+++|.+|.+-
T Consensus 700 ~~vVImVVGAGR-GPLVdraLrAak~~gvkVrIyAVEKN 737 (1072)
T PTZ00357 700 RTLHLVLLGCGR-GPLIDECLHAVSALGVRLRIFAIEKN 737 (1072)
T ss_pred ceEEEEEEcCCc-cHHHHHHHHHHHHcCCcEEEEEEecC
Confidence 346799999888 5555554431 12346899999765
No 488
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=26.02 E-value=61 Score=33.64 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=23.3
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
..||+|+|-|..|...+..|..+. .+++.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G---~~Vtv~e 340 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAG---VQVDVFD 340 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcC---CcEEEEe
Confidence 468999999999999888876543 4554453
No 489
>PRK07074 short chain dehydrogenase; Provisional
Probab=25.97 E-value=1.2e+02 Score=26.47 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=22.4
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
++.|.| .|.||+.+++.|.++. .+++.+.
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g---~~v~~~~ 33 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAG---DRVLALD 33 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCC---CEEEEEe
Confidence 688889 8999999999998753 3555543
No 490
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.93 E-value=1.2e+02 Score=26.10 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=22.5
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEE
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVV 117 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVa 117 (275)
.+|.|.| .|.||+.++|.|.++. .+++.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g---~~v~~ 33 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEG---YDIAV 33 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCC---CEEEE
Confidence 4789999 9999999999998764 35544
No 491
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=25.92 E-value=3.1e+02 Score=25.18 Aligned_cols=96 Identities=16% Similarity=0.076 Sum_probs=51.4
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEcCCCChhhhhhhccccccccccCceEEEecCCeEEECCeEEEEEecC
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNR 165 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaInd~~~~~~~a~LLkyDS~hG~f~~~v~~~e~~~l~inGk~I~V~~~~ 165 (275)
-+|.|+| .|.+|..+++++..+. ..++++... +...++-+ +|. +..+.. .... . .+
T Consensus 156 ~~vlI~ga~g~vg~~~~~~a~~~G---~~v~~~~~~---~~~~~~~~----~g~-~~v~~~--------~~~~--~--~~ 212 (339)
T cd08249 156 KPVLIWGGSSSVGTLAIQLAKLAG---YKVITTASP---KNFDLVKS----LGA-DAVFDY--------HDPD--V--VE 212 (339)
T ss_pred CEEEEEcChhHHHHHHHHHHHHcC---CeEEEEECc---ccHHHHHh----cCC-CEEEEC--------CCch--H--HH
Confidence 4799999 6999999988876653 466655422 33333311 221 111110 0000 0 00
Q ss_pred CCCCCCcccccccEEEcCCCCCCChhhHHHHHHc--CCCEEEEe
Q 023894 166 DPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQA--GAKKVIIT 207 (275)
Q Consensus 166 dP~~i~w~~~giDiVie~TG~f~~~e~a~~Hl~a--GakkVIIS 207 (275)
...+ +...++|+|+|++|.......+..+++. |.+-|.+.
T Consensus 213 ~l~~--~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g 254 (339)
T cd08249 213 DIRA--ATGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLL 254 (339)
T ss_pred HHHH--hcCCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEec
Confidence 0001 1123789999999974456666778877 66433343
No 492
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=25.91 E-value=1e+02 Score=28.51 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=24.4
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
++|-|-| .|-||+.+++.|.++. .+++++.
T Consensus 7 ~~vlVTGatGfiG~~l~~~L~~~G---~~V~~~~ 37 (340)
T PLN02653 7 KVALITGITGQDGSYLTEFLLSKG---YEVHGII 37 (340)
T ss_pred CEEEEECCCCccHHHHHHHHHHCC---CEEEEEe
Confidence 4799999 9999999999998764 4666653
No 493
>PRK07774 short chain dehydrogenase; Provisional
Probab=25.82 E-value=1.2e+02 Score=26.10 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=24.0
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.++.|.| .|-||+.+++.|.++. .+++.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g---~~vi~~~ 37 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREG---ASVVVAD 37 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 4689999 8999999999998764 3666554
No 494
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=25.71 E-value=1e+02 Score=29.29 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=22.7
Q ss_pred eeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|+|+|-|..|-.++..|..+ + ++++.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~-G--~~v~viE 32 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGS-G--LEVLLLD 32 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcC-C--CEEEEEc
Confidence 5799999999999888877543 2 5665554
No 495
>PRK07578 short chain dehydrogenase; Provisional
Probab=25.66 E-value=1.3e+02 Score=25.26 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=21.7
Q ss_pred eEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 88 KVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 88 kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
++.|-| .|.||+.+++.|.++ .+++.+.
T Consensus 2 ~vlItGas~giG~~la~~l~~~----~~vi~~~ 30 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR----HEVITAG 30 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc----CcEEEEe
Confidence 688999 899999999998765 2555443
No 496
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=25.57 E-value=1.1e+02 Score=29.15 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=22.6
Q ss_pred eeeEEEECCChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 86 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 86 ~~kVaInGfGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
..+|.|+|-|..|-.++..|..+ + ++++.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G--~~v~v~E 32 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-G--IDSVVLE 32 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-C--CCEEEEE
Confidence 46899999999999888777543 2 4554444
No 497
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=25.49 E-value=78 Score=30.64 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=18.7
Q ss_pred eEEEECCChhHHHHHHHHHhC
Q 023894 88 KVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 88 kVaInGfGrIGR~vlR~l~er 108 (275)
||+|.|.|.-|..++..|.+.
T Consensus 1 kI~VIGaG~wGtALA~~la~n 21 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN 21 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc
Confidence 699999999999999988754
No 498
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=25.43 E-value=33 Score=33.98 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.2
Q ss_pred cceeeEEEEC-CChhHHHHHHHHHhCC
Q 023894 84 VAKLKVAING-FGRIGRNFLRCWHGRK 109 (275)
Q Consensus 84 ~~~~kVaInG-fGrIGR~vlR~l~er~ 109 (275)
+++.++-||| +|-.|+++++.|..+.
T Consensus 4 e~e~d~iiYGAtGy~G~lvae~l~~~g 30 (382)
T COG3268 4 EREYDIIIYGATGYAGGLVAEYLAREG 30 (382)
T ss_pred CcceeEEEEccccchhHHHHHHHHHcC
Confidence 3668999999 9999999999887653
No 499
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.42 E-value=74 Score=30.29 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=20.8
Q ss_pred ceeeEEEECCChhHHHHHHHHHhC
Q 023894 85 AKLKVAINGFGRIGRNFLRCWHGR 108 (275)
Q Consensus 85 ~~~kVaInGfGrIGR~vlR~l~er 108 (275)
.++||+|.|.|.+|..++..|.+.
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~ 29 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARR 29 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC
Confidence 347899999999999999988764
No 500
>PRK05993 short chain dehydrogenase; Provisional
Probab=25.41 E-value=1.2e+02 Score=27.15 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=23.5
Q ss_pred eeEEEEC-CChhHHHHHHHHHhCCCCCceEEEEc
Q 023894 87 LKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVN 119 (275)
Q Consensus 87 ~kVaInG-fGrIGR~vlR~l~er~~~~l~iVaIn 119 (275)
.+|.|.| .|.||+.+++.|.++. .+++++.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G---~~Vi~~~ 35 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDG---WRVFATC 35 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 4689999 8999999999988754 4665553
Done!