BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023897
(275 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q944B6|TYRA1_ARATH Arogenate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana
GN=TYRAAT1 PE=1 SV=1
Length = 640
Score = 299 bits (766), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 146/281 (51%), Positives = 198/281 (70%), Gaps = 9/281 (3%)
Query: 4 SSPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAF 63
S + S LKIGI+GFG FGQFL KTM+KQGH + A SR+D++ + G+S+FSD
Sbjct: 357 GSVNDGSRLKIGIVGFGNFGQFLGKTMVKQGHTVLAYSRSDYTDEAAKLGVSYFSDLDDL 416
Query: 64 LEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVL 123
E +VI++ TSILS +VL SLP L+R TL DVLSVKE+PRN+ LQ LP++ D+L
Sbjct: 417 FEEHPEVIILCTSILSTEKVLESLPFQRLKRSTLFVDVLSVKEFPRNLFLQTLPQDFDIL 476
Query: 124 CTHPMFGPESGQNGWKDFAFVYEKVRI----RDEATCSSFLRIFESEGCKMLEMSCEEHD 179
CTHPMFGPESG+NGW + AFV++KVRI R ++ C+SFL IF EGC+M+EMSC EHD
Sbjct: 477 CTHPMFGPESGKNGWNNLAFVFDKVRIGMDDRRKSRCNSFLDIFAREGCRMVEMSCAEHD 536
Query: 180 KVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFA 239
AA SQF+THT+GR+L +L ++ST ++TKG+ETL++L E++ DSFDL+ GL+++N A
Sbjct: 537 WHAAGSQFITHTVGRLLEKLSLESTPIDTKGYETLLKLVENTAGDSFDLYYGLFLYNPNA 596
Query: 240 KQELLDLEAAFEKVKHKL-----QQKMEEVQLEQSPNESKL 275
++L AFE +K +L Q E+ SP +KL
Sbjct: 597 MEQLERFHVAFESLKTQLFGRLHSQHSHELAKSSSPKTTKL 637
Score = 275 bits (702), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 135/272 (49%), Positives = 191/272 (70%), Gaps = 6/272 (2%)
Query: 4 SSPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAF 63
S+ +++ L+I IIGFG +GQFLA+T+I QGHIL A SR+DHS R G+S+F+D
Sbjct: 45 SNSNATPPLRIAIIGFGNYGQFLAETLISQGHILFAHSRSDHSSAARRLGVSYFTDLHDL 104
Query: 64 LEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVL 123
E DV+L+ TSILS+ +L +LP L+R TL DVLSVKE+ + +LLQ LPE+ D+L
Sbjct: 105 CERHPDVVLLCTSILSIENILKTLPFQRLRRNTLFVDVLSVKEFAKTLLLQYLPEDFDIL 164
Query: 124 CTHPMFGPE--SGQNGWKDFAFVYEKVRIRDE----ATCSSFLRIFESEGCKMLEMSCEE 177
CTHPMFGP+ S +GW+ FVY+KVRI +E + C SFL IF EGC+M+EMS +
Sbjct: 165 CTHPMFGPQSVSSNHGWRGLRFVYDKVRIGEERLRVSRCESFLEIFVREGCEMVEMSVTD 224
Query: 178 HDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNR 237
HDK AA+SQF+THT+GR+L L++ ST +NTKG+E L+ L E+ DSFDL+ GL+++N
Sbjct: 225 HDKFAAESQFITHTLGRLLGMLKLISTPINTKGYEALLDLAENICGDSFDLYYGLFVYNN 284
Query: 238 FAKQELLDLEAAFEKVKHKLQQKMEEVQLEQS 269
+ + L ++ AFE ++ +L ++ V +QS
Sbjct: 285 NSLEVLERIDLAFEALRKELFSRLHGVVRKQS 316
>sp|Q9LMR3|TYRA2_ARATH Arogenate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana
GN=TYRAAT2 PE=1 SV=1
Length = 358
Score = 280 bits (717), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 136/264 (51%), Positives = 186/264 (70%), Gaps = 4/264 (1%)
Query: 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADN 68
SS LKI ++GFG FGQFL+KT+I+ GH L SR+D+S + G FF + E
Sbjct: 56 SSALKIAVLGFGNFGQFLSKTLIRHGHDLITHSRSDYSDAANSIGARFFDNPHDLCEQHP 115
Query: 69 DVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPM 128
DV+L+ TSILS VL S P L+R TL DVLSVKE+P+ + ++ LP+E D+LCTHPM
Sbjct: 116 DVVLLCTSILSTESVLRSFPFQRLRRSTLFVDVLSVKEFPKALFIKYLPKEFDILCTHPM 175
Query: 129 FGPESGQNGWKDFAFVYEKVRIRDEAT----CSSFLRIFESEGCKMLEMSCEEHDKVAAK 184
FGPESG++ W FVY+KVRI D A+ C FLRIFE+EGCKM+EMSCE+HD AA
Sbjct: 176 FGPESGKHSWSGLPFVYDKVRIGDAASRQERCEKFLRIFENEGCKMVEMSCEKHDYYAAG 235
Query: 185 SQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELL 244
SQF+THT+GRVL + ++S+ +NTKG+ETL+ L E++ +DSF+LF GL+++N A ++L
Sbjct: 236 SQFVTHTMGRVLEKYGVESSPINTKGYETLLDLVENTSSDSFELFYGLFMYNPNALEQLE 295
Query: 245 DLEAAFEKVKHKLQQKMEEVQLEQ 268
L+ AFE VK +L ++ + +Q
Sbjct: 296 RLDMAFESVKKELFGRLHQQYRKQ 319
>sp|Q58029|Y612_METJA Probable arogenate/prephenate dehydrogenase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0612 PE=4 SV=1
Length = 446
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 95/202 (47%), Gaps = 14/202 (6%)
Query: 9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRT--DHSQLCHRSGISFFSDKRAFLE 65
++ L I IIG G++ A+ + +G + T R + G+ F ++ +E
Sbjct: 3 NTNLTISIIGGTDGLGKWFARYLKNKGFNVIVTGRDIEKGKNVEKELGVEFTNNN---IE 59
Query: 66 A--DNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVL 123
A D+++++ I V+ + H ++ L+ D+ S+KE P + + + E + V+
Sbjct: 60 AAKKGDIVIVAVPINVTERVIKEVAPH-VREGCLLMDITSIKEIPSKAMEEHVKEGVTVI 118
Query: 124 CTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAA 183
THPMFGP S + + + + ++ + + EG K++ + E+HD++
Sbjct: 119 PTHPMFGP-STPSLLRQVVILTPSEKHKNTEWFNKVYNFLKKEGAKVIVIPPEKHDRIMG 177
Query: 184 KSQFLTH----TIGRVLSELEI 201
Q LTH ++G L EL +
Sbjct: 178 IVQGLTHFAFISLGATLKELNV 199
>sp|P07023|TYRA_ECOLI T-protein OS=Escherichia coli (strain K12) GN=tyrA PE=1 SV=1
Length = 373
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 37/206 (17%)
Query: 6 PSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLE 65
PS + +G G G G+ K + G+ +R + D D+ A +
Sbjct: 96 PSLRPVVIVG--GGGQMGRLFEKMLTLSGYQVRILEQHDW-------------DRAADIV 140
Query: 66 ADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCT 125
AD ++++S I +V+ LP L + ++ D+ SVK P +L + + VL
Sbjct: 141 ADAGMVIVSVPIHVTEQVIGKLP--PLPKDCILVDLASVKNGPLQAML--VAHDGPVLGL 196
Query: 126 HPMFGPESGQNG-----WKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDK 180
HPMFGP+SG W D R FL + G ++ +S EHD+
Sbjct: 197 HPMFGPDSGSLAKQVVVWCDG---------RKPEAYQWFLEQIQVWGARLHRISAVEHDQ 247
Query: 181 ----VAAKSQFLTHTIGRVLSELEIQ 202
+ A F T G L+E +Q
Sbjct: 248 NMAFIQALRHFATFAYGLHLAEENVQ 273
>sp|O60078|TYR1_SCHPO Probable prephenate dehydrogenase [NADP(+)] OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=tyr1 PE=2 SV=1
Length = 431
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 110/246 (44%), Gaps = 21/246 (8%)
Query: 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS---QLCHRSGISFFSDKRAF-LEA 66
T ++GIIGFG G+ A+ + K G + R ++ Q + +G + K F +
Sbjct: 4 TFQVGIIGFGDMGRLYAEYISKAGWRVNVCDRPENYESIQATYGNG-GYTVLKDGFQVSR 62
Query: 67 DNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTH 126
+D IL S + +V+ +L + ++ S K N + LPE++D++ H
Sbjct: 63 TSDYILYSVEAEHIDKVV-ALYGPATKVGAIVGGQTSCKAPEMNAFEKYLPEDVDIISCH 121
Query: 127 PMFGPESGQNGWKDFAFVYEKVRIRDE--ATCSSFLRIFESEGCKMLEMSCEEHDKVAAK 184
M GP+ K V + R DE + L F+S ++ +S +EHD++ A
Sbjct: 122 SMHGPKVNP---KSQPLVIIRHRASDEHFEIVNEILSCFKS---SVVYLSAKEHDRITAD 175
Query: 185 SQFLTH----TIGRVLSELEIQSTSMN--TKGFETL-IRLKESSVNDSFDLFSGLYIHNR 237
+Q +TH T+G +N G E + + L + + +++GL I N
Sbjct: 176 TQAVTHAAFLTMGLAWHANNQYPWEINRWCGGIENIKMNLSMRIYSSKWHVYAGLAILNP 235
Query: 238 FAKQEL 243
A++++
Sbjct: 236 EAQRQI 241
>sp|Q02287|TYRA_ENTAG T-protein OS=Enterobacter agglomerans GN=tyrA PE=4 SV=1
Length = 373
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 68/178 (38%), Gaps = 31/178 (17%)
Query: 18 GFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSI 77
G G G+ K + G+ ++ + D Q L +D +++IS I
Sbjct: 106 GKGQMGRLFEKMLGLSGYTVKTLDKEDWPQ-------------AETLLSDAGMVIISVPI 152
Query: 78 LSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNG 137
+V+ LP L ++ D+ SVK P +L VL HPMFGP+SG
Sbjct: 153 HLTEQVIAQLP--PLPEDCILVDLASVKNRPLQAMLAA--HNGPVLGLHPMFGPDSGSLA 208
Query: 138 -----WKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTH 190
W D R FL + G ++ +S EHD+ A Q L H
Sbjct: 209 KQVVVWCDG---------RQPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRH 257
>sp|P20049|TYR1_YEAST Prephenate dehydrogenase [NADP(+)] OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TYR1 PE=1 SV=2
Length = 452
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 108/250 (43%), Gaps = 22/250 (8%)
Query: 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFS--DKRAFLEA 66
+T IGIIG G G A G + R ++ +L + + F +
Sbjct: 12 ATKVIGIIGLGDMGLLYANKFTDAGWGVICCDREEYYDELKEKYASAKFELVKNGHLVSR 71
Query: 67 DNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTH 126
+D I+ S ++S+++ + + T++ S K + LP++ D++ H
Sbjct: 72 QSDYIIYSVEASNISKIVATYGPSS-KVGTIVGGQTSCKLPEIEAFEKYLPKDCDIITVH 130
Query: 127 PMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGC---KMLEMSCEEHDKVAA 183
+ GP+ G + + + + + SF + C K + ++ EEHDK+ A
Sbjct: 131 SLHGPKVNTEG-QPLVIINHRSQYPE-----SFEFVNSVMACLKSKQVYLTYEEHDKITA 184
Query: 184 KSQFLTH----TIGRVLSELEIQSTSMNTK----GFETL-IRLKESSVNDSFDLFSGLYI 234
+Q +TH ++G ++++I ++ G E + + + ++ + +++GL I
Sbjct: 185 DTQAVTHAAFLSMGSAWAKIKIYPWTLGVNKWYGGLENVKVNISLRIYSNKWHVYAGLAI 244
Query: 235 HNRFAKQELL 244
N A Q++L
Sbjct: 245 TNPSAHQQIL 254
>sp|P20692|TYRA_BACSU Prephenate dehydrogenase OS=Bacillus subtilis (strain 168) GN=tyrA
PE=4 SV=2
Length = 371
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 20/188 (10%)
Query: 71 ILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFG 130
++I+T + +L L ++ LI DV S K+ + QVLP + HPM G
Sbjct: 69 VIIATPVEQTLVMLEELAHSGIEHELLITDVGSTKQKVVDYADQVLPSRYQFVGGHPMAG 128
Query: 131 P-ESGQNGWKDFAF-----VYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAK 184
+SG K+F F + + D+ + + +EMS EEHD V +
Sbjct: 129 SHKSGVAAAKEFLFENAFYILTPGQKTDKQAVEQLKNLLKGTNAHFVEMSPEEHDGVTSV 188
Query: 185 SQFLTHTIGRVLSELEIQSTSM-------NTKGFETLIRLKESSVNDSFDLFSGLYIHNR 237
H + L S ++ GF + R+ SS ++ + +HN
Sbjct: 189 ISHFPHIVAASLVHQTHHSENLYPLVKRFAAGGFRDITRIASSSPA----MWRDILLHN- 243
Query: 238 FAKQELLD 245
K ++LD
Sbjct: 244 --KDKILD 249
>sp|P43902|TYRA_HAEIN T-protein OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=tyrA PE=1 SV=1
Length = 377
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 29/188 (15%)
Query: 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEA 66
+S KI I+G +G G A+ + G+ + R D ++ + L A
Sbjct: 97 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED------------WAVAESIL-A 143
Query: 67 DNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTH 126
+ DV+++S I E + L + L L+AD+ SVK P +L+V VL H
Sbjct: 144 NADVVIVSVPINLTLETIERLKPY-LTENMLLADLTSVKREPLAKMLEV--HTGAVLGLH 200
Query: 127 PMFGPESGQNGWKDFAFVYEKVRIRDEATCSS----FLRIFESEGCKMLEMSCEEHDKVA 182
PMFG D A + ++V +R + L + G K+ + + EHD
Sbjct: 201 PMFGA--------DIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQTNATEHDHNM 252
Query: 183 AKSQFLTH 190
Q L H
Sbjct: 253 TYIQALRH 260
>sp|Q49XG5|TYRA_STAS1 Prephenate dehydrogenase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=tyrA
PE=4 SV=1
Length = 363
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 19/227 (8%)
Query: 13 KIGIIGFGPFGQFLAKTMIKQGHILRATS-RTDHSQLCHRSGISFF----SDKRAFLEAD 67
+I +G G G LA + + T+ D SQL I +D + +E +
Sbjct: 3 QILFVGLGLIGGSLASNLRYYHDDIEITAFDADTSQLDKALSIGIIDYQSTDYKTSVE-N 61
Query: 68 NDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHP 127
D+I+ +T + + L LP + L++ +I D S K + +L ++ ++ HP
Sbjct: 62 ADIIIYATPVQQTVKYLQDLPNYQLKKHVIITDTGSTKSTIQQYEQFLLNHDIHLVGGHP 121
Query: 128 MFGP-ESG-----QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKV 181
M G +SG ++ +++ ++ ++A + ++ K + + EEHD V
Sbjct: 122 MAGSHKSGVLNAKKHLFENAFYILVHNETDNDAAFEEIQHLLQTTSAKFISTTAEEHDFV 181
Query: 182 AAKSQFLTHTIGRVLSELEIQST-------SMNTKGFETLIRLKESS 221
+ H I L L Q ++ GF + R+ S+
Sbjct: 182 TGIVSHVPHIIASSLVHLNAQHVEDSSLVKTLAAGGFRDITRIASSN 228
>sp|Q4L672|TYRA_STAHJ Prephenate dehydrogenase OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=tyrA PE=4 SV=1
Length = 363
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 88/228 (38%), Gaps = 25/228 (10%)
Query: 17 IGFGPFGQFLAKTM-IKQGHILRATSRTDHSQLCHRSGISFFSDK-RAFLEA--DNDVIL 72
IG G G LA + Q ++ + D QL I K + E + D+I+
Sbjct: 7 IGLGLIGGSLASNLKYYQPNLTISAFDADKDQLEKALSIGIIDKKIEDYSEGVKNADIII 66
Query: 73 ISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGP- 131
+T + L LP + Q ++ D S K ++ +L ++ ++ HPM G
Sbjct: 67 YATPVQQTELYLKELPNYQTQSHLIVTDTGSTKSNIQSYEKFLLNNDIHLVGGHPMAGSH 126
Query: 132 ESG---------QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVA 182
+SG +N + + VY+ R+ + + + K + S +EHD V
Sbjct: 127 KSGVLNSKKHLFENAY--YILVYDDA--RNAESAKKLQTLLSTTSAKFITTSAQEHDYVT 182
Query: 183 AKSQFLTHTIGRVLSEL-EIQS------TSMNTKGFETLIRLKESSVN 223
+ H I L L E S T + GF + R+ S+ +
Sbjct: 183 GVVSHIPHIIASSLVHLSETNSKNHTLVTQLAAGGFRDVTRIASSNAD 230
>sp|O66553|P5CR_AQUAE Pyrroline-5-carboxylate reductase OS=Aquifex aeolicus (strain
VF5) GN=proC PE=3 SV=1
Length = 265
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 11 TLKIGIIGFGPFGQFLA----KTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEA 66
T+++GI+GFG GQ A K + K+ +I+ + L GI+F SD + FL
Sbjct: 7 TMRVGIVGFGNMGQAFALCFSKKLGKE-NIIVTDKVQEKRNLATEMGIAFASDVK-FLAD 64
Query: 67 DNDVILISTSILSLSEVLNSL 87
++DV+L++ EVL L
Sbjct: 65 NSDVVLVAVKPKDSQEVLQKL 85
>sp|Q8EH68|TYRA_SHEON T-protein OS=Shewanella oneidensis (strain MR-1) GN=tyrA PE=3 SV=1
Length = 379
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 20/185 (10%)
Query: 66 ADNDVILISTSILS----LSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMD 121
AD ++L++ I + E L LP C+ +AD+ S+K P +L +
Sbjct: 145 ADAGLVLVTVPIAITCDIIREKLTQLPRDCI-----LADLTSIKTEPMQAMLAA--HKGP 197
Query: 122 VLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDK- 180
V+ HPMFGP+ G K V R+ L G +++E E HD
Sbjct: 198 VVGFHPMFGPDVGSLA-KQVVVVCHG---READKYQWLLEQIAIWGARIVEAEPECHDNA 253
Query: 181 ---VAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNR 237
V A F T G L + E ++ K + RL+ + V F LY
Sbjct: 254 MQLVQAMRHFSTFVYGLNLCKEEADIETL-LKFSSPIYRLELAMVGRLFAQSPELYADII 312
Query: 238 FAKQE 242
FA+QE
Sbjct: 313 FAQQE 317
>sp|O04016|P5CR_ACTCH Pyrroline-5-carboxylate reductase OS=Actinidia chinensis PE=2 SV=1
Length = 278
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 6 PSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFS----DKR 61
P + T K+G IG G + +A+ ++K G + + RT H R F D+
Sbjct: 8 PIPTDTYKLGFIGAGKMAESIARGVVKSGVLPASRIRTAHLGSARREAFESFGVKVLDRN 67
Query: 62 AFLEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVK 105
+ D+DVI+ S + EV+ L +++ L++ V VK
Sbjct: 68 DQVVEDSDVIIFSVKPQIVKEVVLQLRPLLSEKQLLVSIVAGVK 111
>sp|P76440|PRET_ECOLI NAD-dependent dihydropyrimidine dehydrogenase sunbunit PreT
OS=Escherichia coli (strain K12) GN=preT PE=1 SV=1
Length = 412
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 MAVSSPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDK 60
M + P + + K+ IIG GP G + T+ QG+ + + H R+GI F
Sbjct: 114 MEIYQPGTKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAHPGGWLRNGIPQFRLP 173
Query: 61 RAFLEADNDVI-LISTSILSLSEVLNSL 87
++ L+A+ I + +I +EV N+L
Sbjct: 174 QSVLDAEIARIEKMGVTIKCNNEVGNTL 201
>sp|Q9LE33|HPR3_ARATH Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana
GN=HPR3 PE=2 SV=1
Length = 323
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEA 66
S S ++GI+G G G F+AK + G ++ SR+ +R ++SD + E
Sbjct: 148 SKVSGKRVGIVGLGSIGSFVAKRLESFGCVISYNSRSQKQSSPYR----YYSDILSLAE- 202
Query: 67 DNDVILISTSI 77
+NDV+++ S+
Sbjct: 203 NNDVLVLCCSL 213
>sp|Q8X645|PRET_ECO57 NAD-dependent dihydropyrimidine dehydrogenase subunit PreT
OS=Escherichia coli O157:H7 GN=preT PE=3 SV=1
Length = 412
Score = 35.0 bits (79), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 1 MAVSSPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDK 60
M + P + + K+ IIG GP G + T+ QG+ + + H R+GI F
Sbjct: 114 MEIYQPGTKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAHPGGWLRNGIPQFRLP 173
Query: 61 RAFLEAD 67
++ L+A+
Sbjct: 174 QSVLDAE 180
>sp|Q2YXV4|TYRA_STAAB Prephenate dehydrogenase OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=tyrA PE=4 SV=1
Length = 363
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 89/227 (39%), Gaps = 25/227 (11%)
Query: 17 IGFGPFGQFLAKTMIKQGHILRATSR-TDHSQLCHRSGISFFSDK-RAFLEA--DNDVIL 72
+G G G LA + + D SQL I ++K + EA DVI+
Sbjct: 7 VGLGLIGGSLASNIKYHNPNTNIIAYDADTSQLDKAKSIGIINEKCLNYSEAIKKADVII 66
Query: 73 ISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGP- 131
+T + ++ L+ L + +++D S K + +L + ++ HPM G
Sbjct: 67 YATPVAITNKYLSELIDMPTKPGVIVSDTGSTKAMIQQHECSLLKHNIHLVSGHPMAGSH 126
Query: 132 ESG---------QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVA 182
+SG +N + + VY + R +E ++ + K + + EEHD V
Sbjct: 127 KSGVLNAKKHLFENAY--YILVYNEPR--NEQAANTLKELLSPTLAKFIVTTAEEHDYVT 182
Query: 183 AKSQFLTHTIGRVLSELEIQS-------TSMNTKGFETLIRLKESSV 222
+ L H + L + ++ + GF + R+ S+V
Sbjct: 183 SVVSHLPHIVASSLVHVSQKNGQEHHLVNKLAAGGFRDITRIASSNV 229
>sp|Q58325|ASPD_METJA Probable L-aspartate dehydrogenase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=nadX PE=3 SV=1
Length = 267
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 12 LKIGIIGFGPFGQFLAKTM----IKQGHILRATSRT-DHSQ-LCHRSGISFFSDKRAFLE 65
LKIGI+G G G F+ K + IK I R D ++ L R+G S ++
Sbjct: 2 LKIGIVGCGAIGNFITKKVLDGTIKNAKISAVYDRNFDKAKTLSERTGAKICSSIDDLVK 61
Query: 66 ADNDVILISTSILSLSEV 83
D D+++ + SI ++ E+
Sbjct: 62 EDLDLVVEAASIKAVEEI 79
>sp|Q9CET9|TYRA_LACLA Prephenate dehydrogenase OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=tyrA PE=4 SV=1
Length = 354
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 75/182 (41%), Gaps = 29/182 (15%)
Query: 31 IKQGHI---LRATSRTDHSQLCHRSGISFFSDKRAFLEADN--DVILISTSILSLSEVLN 85
IK+ H + + R + ++ + GI K + +E D+I+++ I++ E+L
Sbjct: 20 IKRAHPDFEILGSDRENIQEIAQKRGI--IDSKVSLVEGAQKADIIILAVPIITTLELLK 77
Query: 86 SLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE-MDVLCTHPMFGP-ESG--------- 134
L L++ LI D S K + Q+ E+ + + HPM G +SG
Sbjct: 78 KLATLNLKKGLLITDTGSTKSEIVELANQLFDEDKVRFIGGHPMAGSHKSGVMAADINLF 137
Query: 135 QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR 194
+N + + E +RD + + K + + +EHD+V + H +
Sbjct: 138 ENAY--YVLTQENQELRD---------LLKGLHAKFIILDAKEHDRVTGQVSHFPHILAS 186
Query: 195 VL 196
L
Sbjct: 187 AL 188
>sp|Q04983|TYRC_ZYMMO Protein TyrC OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821
/ ZM4 / CP4) GN=tyrC PE=1 SV=2
Length = 293
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 14/134 (10%)
Query: 69 DVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPM 128
D++L+ + ++ V ++ L++ +I D SVK L LP + ++ +HP+
Sbjct: 66 DLVLLCVPVRAMGIVAAAM-APALKKDVIICDTGSVKVSVIKTLQDNLPNHI-IVPSHPL 123
Query: 129 FGPESGQNGWKDFAFV-----YEKVRIRDEATCSSFLRI----FESEGCKMLEMSCEEHD 179
G E N D F + + D T + + +E G ++ MS E HD
Sbjct: 124 AGTE---NNGPDAGFAELFQDHPVILTPDAHTPAQAIAYIADYWEEIGGRINLMSAEHHD 180
Query: 180 KVAAKSQFLTHTIG 193
V A + L H I
Sbjct: 181 HVLALTSHLPHVIA 194
>sp|Q6GH39|TYRA_STAAR Prephenate dehydrogenase OS=Staphylococcus aureus (strain MRSA252)
GN=tyrA PE=4 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 25/226 (11%)
Query: 17 IGFGPFGQFLAKTMIKQGHILRATSR-TDHSQLCHRSGISFFSDK-RAFLEA--DNDVIL 72
+G G G LA + + D SQL I ++K + EA DVI+
Sbjct: 7 VGLGLIGGSLASNIKYHNPNTNIIAYDADTSQLDKAKSIGIINEKCLNYSEAIKKADVII 66
Query: 73 ISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGP- 131
+T + ++ L+ L + +++D S K + +L + ++ HPM G
Sbjct: 67 YATPVAITNKYLSELIHMPTKPGVIVSDTGSTKAMIQQHECSLLKHNIHLVSGHPMAGSH 126
Query: 132 ESG---------QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVA 182
+SG +N + + VY + R +E ++ + K + + EEHD V
Sbjct: 127 KSGVLNAKKHLFENAY--YILVYNEPR--NEQAANTLKELLSPTLAKFIVTTAEEHDYVT 182
Query: 183 AKSQFLTHTIGRVLSELEIQST-------SMNTKGFETLIRLKESS 221
+ L H + L + +++ + GF + R+ S+
Sbjct: 183 SVVSHLPHIVASSLVHVSQKNSQEHHLVNKLAAGGFRDITRIASSN 228
>sp|Q8NWU6|TYRA_STAAW Prephenate dehydrogenase OS=Staphylococcus aureus (strain MW2)
GN=tyrA PE=4 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 25/226 (11%)
Query: 17 IGFGPFGQFLAKTMIKQGHILRATSR-TDHSQLCHRSGISFFSDK-RAFLEA--DNDVIL 72
+G G G LA + + D SQL I ++K + EA DVI+
Sbjct: 7 VGLGLIGGSLASNIKYHNPNTNIIAYDADTSQLDKAKSIGIINEKCLNYSEAIKKADVII 66
Query: 73 ISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGP- 131
+T + ++ L+ L + +++D S K + +L + ++ HPM G
Sbjct: 67 YATPVAITNKYLSELIDMPTKPGVIVSDTGSTKAMIQQHECNLLKHNIHLVSGHPMAGSH 126
Query: 132 ESG---------QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVA 182
+SG +N + + VY + R +E ++ + K + + EEHD V
Sbjct: 127 KSGVLNAKKHLFENAY--YILVYNEPR--NEQAANTLKELLSPTLAKFIVTTAEEHDYVT 182
Query: 183 AKSQFLTHTIGRVLSELEIQS-------TSMNTKGFETLIRLKESS 221
+ L H + L + ++ + GF + R+ S+
Sbjct: 183 SVVSHLPHIVASSLVHVSQKNGQEHHLVNKLAAGGFRDITRIASSN 228
>sp|Q6G9J4|TYRA_STAAS Prephenate dehydrogenase OS=Staphylococcus aureus (strain MSSA476)
GN=tyrA PE=4 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 25/226 (11%)
Query: 17 IGFGPFGQFLAKTMIKQGHILRATSR-TDHSQLCHRSGISFFSDK-RAFLEA--DNDVIL 72
+G G G LA + + D SQL I ++K + EA DVI+
Sbjct: 7 VGLGLIGGSLASNIKYHNPNTNIIAYDADTSQLDKAKSIGIINEKCLNYSEAIKKADVII 66
Query: 73 ISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGP- 131
+T + ++ L+ L + +++D S K + +L + ++ HPM G
Sbjct: 67 YATPVAITNKYLSELIDMPTKPGVIVSDTGSTKAMIQQHECNLLKHNIHLVSGHPMAGSH 126
Query: 132 ESG---------QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVA 182
+SG +N + + VY + R +E ++ + K + + EEHD V
Sbjct: 127 KSGVLNAKKHLFENAY--YILVYNEPR--NEQAANTLKELLSPTLAKFIVTTAEEHDYVT 182
Query: 183 AKSQFLTHTIGRVLSELEIQS-------TSMNTKGFETLIRLKESS 221
+ L H + L + ++ + GF + R+ S+
Sbjct: 183 SVVSHLPHIVASSLVHVSQKNGQEHHLVNKLAAGGFRDITRIASSN 228
>sp|Q5HG54|TYRA_STAAC Prephenate dehydrogenase OS=Staphylococcus aureus (strain COL)
GN=tyrA PE=4 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 25/226 (11%)
Query: 17 IGFGPFGQFLAKTMIKQGHILRATSR-TDHSQLCHRSGISFFSDK-RAFLEA--DNDVIL 72
+G G G LA + + D SQL I ++K + EA DVI+
Sbjct: 7 VGLGLIGGSLASNIKYHNPNTNIIAYDADTSQLDKAKSIGIINEKCLNYSEAIKKADVII 66
Query: 73 ISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGP- 131
+T + ++ L+ L + +++D S K + +L + ++ HPM G
Sbjct: 67 YATPVAITNKYLSELIDMPTKPGVIVSDTGSTKAMIQQHECNLLKHNIHLVSGHPMAGSH 126
Query: 132 ESG---------QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVA 182
+SG +N + + VY + R +E ++ + K + + EEHD V
Sbjct: 127 KSGVLNAKKHLFENAY--YILVYNEPR--NEQAANTLKELLSPTLAKFIVTTAEEHDYVT 182
Query: 183 AKSQFLTHTIGRVLSELEIQS-------TSMNTKGFETLIRLKESS 221
+ L H + L + ++ + GF + R+ S+
Sbjct: 183 SVVSHLPHIVASSLVHVSQKNGQEHHLVNKLAAGGFRDITRIASSN 228
>sp|Q2FH71|TYRA_STAA3 Prephenate dehydrogenase OS=Staphylococcus aureus (strain USA300)
GN=tyrA PE=4 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 25/226 (11%)
Query: 17 IGFGPFGQFLAKTMIKQGHILRATSR-TDHSQLCHRSGISFFSDK-RAFLEA--DNDVIL 72
+G G G LA + + D SQL I ++K + EA DVI+
Sbjct: 7 VGLGLIGGSLASNIKYHNPNTNIIAYDADTSQLDKAKSIGIINEKCLNYSEAIKKADVII 66
Query: 73 ISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGP- 131
+T + ++ L+ L + +++D S K + +L + ++ HPM G
Sbjct: 67 YATPVAITNKYLSELIDMPTKPGVIVSDTGSTKAMIQQHECNLLKHNIHLVSGHPMAGSH 126
Query: 132 ESG---------QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVA 182
+SG +N + + VY + R +E ++ + K + + EEHD V
Sbjct: 127 KSGVLNAKKHLFENAY--YILVYNEPR--NEQAANTLKELLSPTLAKFIVTTAEEHDYVT 182
Query: 183 AKSQFLTHTIGRVLSELEIQS-------TSMNTKGFETLIRLKESS 221
+ L H + L + ++ + GF + R+ S+
Sbjct: 183 SVVSHLPHIVASSLVHVSQKNGQEHHLVNKLAAGGFRDITRIASSN 228
>sp|Q7N571|GHRA_PHOLL Glyoxylate/hydroxypyruvate reductase A OS=Photorhabdus luminescens
subsp. laumondii (strain TT01) GN=ghrA PE=3 SV=1
Length = 313
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 6 PSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT 43
P +G++G G G+ +A+T+++ G I+R SRT
Sbjct: 132 PYDRKDFVVGVLGAGVLGRRVAQTLVEWGFIVRCWSRT 169
>sp|Q7A5R7|TYRA_STAAN Prephenate dehydrogenase OS=Staphylococcus aureus (strain N315)
GN=tyrA PE=4 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 25/226 (11%)
Query: 17 IGFGPFGQFLAKTMIKQGHILRATSR-TDHSQLCHRSGISFFSDK-RAFLEA--DNDVIL 72
+G G G LA + + D SQL I ++K + EA DVI+
Sbjct: 7 VGLGLIGGSLASNIKYHNPNTNIIAYDADTSQLDKAKSIGIINEKCLNYSEAIKKADVII 66
Query: 73 ISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGP- 131
+T + ++ L+ L + +++D S K + +L + ++ HPM G
Sbjct: 67 YATPVAITNKYLSELIDMPTKPGVIVSDTGSTKAMIQQHESNLLKHNIHLVSGHPMAGSH 126
Query: 132 ESG---------QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVA 182
+SG +N + + VY + R +E ++ + K + + EEHD V
Sbjct: 127 KSGVLNAKKHLFENAY--YILVYNEPR--NEQAANTLKELLSPTLAKFIVTTAEEHDYVT 182
Query: 183 AKSQFLTHTIGRVLSELEIQS-------TSMNTKGFETLIRLKESS 221
+ L H + L + ++ + GF + R+ S+
Sbjct: 183 SVVSHLPHIVASSLVHVSQKNGQEHHLVNKLAAGGFRDITRIASSN 228
>sp|Q99UB6|TYRA_STAAM Prephenate dehydrogenase OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=tyrA PE=4 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 25/226 (11%)
Query: 17 IGFGPFGQFLAKTMIKQGHILRATSR-TDHSQLCHRSGISFFSDK-RAFLEA--DNDVIL 72
+G G G LA + + D SQL I ++K + EA DVI+
Sbjct: 7 VGLGLIGGSLASNIKYHNPNTNIIAYDADTSQLDKAKSIGIINEKCLNYSEAIKKADVII 66
Query: 73 ISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGP- 131
+T + ++ L+ L + +++D S K + +L + ++ HPM G
Sbjct: 67 YATPVAITNKYLSELIDMPTKPGVIVSDTGSTKAMIQQHESNLLKHNIHLVSGHPMAGSH 126
Query: 132 ESG---------QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVA 182
+SG +N + + VY + R +E ++ + K + + EEHD V
Sbjct: 127 KSGVLNAKKHLFENAY--YILVYNEPR--NEQAANTLKELLSPTLAKFIVTTAEEHDYVT 182
Query: 183 AKSQFLTHTIGRVLSELEIQS-------TSMNTKGFETLIRLKESS 221
+ L H + L + ++ + GF + R+ S+
Sbjct: 183 SVVSHLPHIVASSLVHVSQKNGQEHHLVNKLAAGGFRDITRIASSN 228
>sp|Q6P4W5|GNL3_XENTR Guanine nucleotide-binding protein-like 3 OS=Xenopus tropicalis
GN=gnl3 PE=2 SV=2
Length = 548
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 6 PSSSSTLKIGIIGFGPFGQFLAKTMIKQGHI 36
PS S +K+G+IGF G+ +KQ H+
Sbjct: 242 PSQSDAIKVGVIGFANVGKSSVINSLKQSHV 272
>sp|Q2FYS1|TYRA_STAA8 Prephenate dehydrogenase OS=Staphylococcus aureus (strain NCTC
8325) GN=tyrA PE=4 SV=1
Length = 363
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 69/170 (40%), Gaps = 21/170 (12%)
Query: 69 DVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPM 128
DVI+ +T + ++ L+ L + +++D S K + +L + ++ HPM
Sbjct: 63 DVIIYATPVAITNKYLSELIDMPTKPGVIVSDTGSTKAMIQQHECNLLKHNIHLVSGHPM 122
Query: 129 FGP-ESG---------QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEH 178
G +SG +N + + VY + R +E ++ + K + + EEH
Sbjct: 123 AGSHKSGVLNAKKHLFENAY--YILVYNEPR--NEQAANTLKELLSPTLAKFIVTTAEEH 178
Query: 179 DKVAAKSQFLTHTIGRVLSELEIQS-------TSMNTKGFETLIRLKESS 221
D V + L H + L + ++ + GF + R+ S+
Sbjct: 179 DYVTSVVSHLPHIVASSLVHVSQKNGQEHHLVNKLAAGGFRDITRIASSN 228
>sp|Q7Q161|GLYR1_ANOGA Putative oxidoreductase GLYR1 homolog OS=Anopheles gambiae
GN=AGAP009949 PE=3 SV=5
Length = 566
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH 45
+S LK G +G G G + K +IK GH + +R+ H
Sbjct: 278 ASQLKFGFLGLGVMGCGIVKNLIKSGHSVVVWNRSAH 314
>sp|Q58053|Y636_METJA Uncharacterized protein MJ0636 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJ0636 PE=4 SV=1
Length = 397
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEA 66
S TLKI ++G GP G+ A + K G + + C G ++ + R +
Sbjct: 4 GESMTLKIAVVGAGPAGRTSAMFLAKNGFDVDLFEKDRVGGTCLNYGCTYITGLREMADI 63
Query: 67 DNDVILISTSILSLSEVL 84
N++ ++ + L E++
Sbjct: 64 INNLSILKGEKVHLEEII 81
>sp|P29266|3HIDH_RAT 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus
norvegicus GN=Hibadh PE=1 SV=3
Length = 335
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 2 AVSSPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHIL 37
AV S S +S +G IG G G +AK +IK G+ L
Sbjct: 29 AVCSRSMASKTPVGFIGLGNMGNPMAKNLIKHGYPL 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,639,717
Number of Sequences: 539616
Number of extensions: 3555396
Number of successful extensions: 10993
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 10950
Number of HSP's gapped (non-prelim): 69
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)