Query 023897
Match_columns 275
No_of_seqs 273 out of 2614
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:26:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02256 arogenate dehydrogena 100.0 4.3E-48 9.3E-53 339.0 30.7 262 8-271 33-300 (304)
2 COG0287 TyrA Prephenate dehydr 100.0 1.4E-47 3E-52 330.2 27.3 252 10-268 2-268 (279)
3 PF02153 PDH: Prephenate dehyd 100.0 1.3E-44 2.7E-49 311.6 22.4 235 26-268 1-255 (258)
4 PRK07417 arogenate dehydrogena 100.0 2.4E-44 5.2E-49 313.7 23.8 246 12-268 1-266 (279)
5 PRK08507 prephenate dehydrogen 100.0 2E-42 4.2E-47 301.2 25.8 247 12-268 1-264 (275)
6 PRK06545 prephenate dehydrogen 100.0 7.3E-43 1.6E-47 314.1 23.7 249 12-267 1-267 (359)
7 PRK07502 cyclohexadienyl dehyd 100.0 2E-42 4.2E-47 305.7 25.8 253 9-268 4-277 (307)
8 PRK08818 prephenate dehydrogen 100.0 2.7E-42 5.9E-47 307.7 26.5 235 10-265 3-255 (370)
9 PRK08655 prephenate dehydrogen 100.0 5.7E-42 1.2E-46 314.6 29.1 248 12-268 1-263 (437)
10 PLN02712 arogenate dehydrogena 100.0 1.4E-41 3E-46 324.9 30.9 259 9-269 50-314 (667)
11 PLN02712 arogenate dehydrogena 100.0 4.2E-41 9.1E-46 321.6 29.0 258 9-268 367-630 (667)
12 PRK11199 tyrA bifunctional cho 100.0 1.1E-40 2.5E-45 300.8 26.7 235 8-267 95-341 (374)
13 PRK06444 prephenate dehydrogen 100.0 2.3E-38 4.9E-43 259.8 22.2 194 12-253 1-195 (197)
14 PRK14806 bifunctional cyclohex 100.0 3.9E-36 8.4E-41 293.9 25.1 250 11-267 3-272 (735)
15 PRK11861 bifunctional prephena 100.0 7.3E-35 1.6E-39 281.1 17.9 191 71-267 1-206 (673)
16 KOG2380 Prephenate dehydrogena 100.0 3.5E-33 7.5E-38 238.1 20.5 261 11-271 52-316 (480)
17 PRK12491 pyrroline-5-carboxyla 99.9 1.9E-25 4.1E-30 193.5 20.0 243 11-267 2-262 (272)
18 COG0345 ProC Pyrroline-5-carbo 99.9 1.5E-24 3.2E-29 184.8 18.9 241 11-267 1-259 (266)
19 PLN02688 pyrroline-5-carboxyla 99.9 3.9E-24 8.5E-29 185.3 20.8 239 12-266 1-258 (266)
20 PRK11880 pyrroline-5-carboxyla 99.9 5.1E-24 1.1E-28 184.7 21.1 241 11-266 2-259 (267)
21 PRK07679 pyrroline-5-carboxyla 99.9 1.2E-23 2.7E-28 183.4 21.1 242 10-266 2-263 (279)
22 PTZ00431 pyrroline carboxylate 99.9 5.7E-23 1.2E-27 177.3 19.8 238 10-267 2-255 (260)
23 PRK06928 pyrroline-5-carboxyla 99.9 3.8E-22 8.3E-27 173.7 17.3 238 11-264 1-259 (277)
24 PRK07680 late competence prote 99.9 1.4E-20 3.1E-25 163.6 19.5 239 12-267 1-259 (273)
25 COG0240 GpsA Glycerol-3-phosph 99.9 4E-21 8.7E-26 166.7 14.1 209 11-232 1-237 (329)
26 PRK07634 pyrroline-5-carboxyla 99.9 2.3E-20 4.9E-25 159.8 18.1 223 9-246 2-244 (245)
27 COG2084 MmsB 3-hydroxyisobutyr 99.9 2.2E-19 4.7E-24 154.5 21.6 169 12-189 1-177 (286)
28 PF03446 NAD_binding_2: NAD bi 99.8 4.1E-21 8.8E-26 154.5 8.8 152 11-171 1-158 (163)
29 PRK15059 tartronate semialdehy 99.8 2.2E-19 4.8E-24 157.3 20.4 169 12-189 1-175 (292)
30 PRK06476 pyrroline-5-carboxyla 99.8 1.8E-19 3.8E-24 155.6 19.1 235 12-269 1-254 (258)
31 TIGR01505 tartro_sem_red 2-hyd 99.8 2.6E-18 5.6E-23 150.8 19.7 169 13-190 1-176 (291)
32 PRK08293 3-hydroxybutyryl-CoA 99.8 5.4E-18 1.2E-22 148.5 19.4 179 11-200 3-210 (287)
33 TIGR01692 HIBADH 3-hydroxyisob 99.8 3.5E-18 7.6E-23 149.7 17.7 165 16-189 1-172 (288)
34 TIGR00465 ilvC ketol-acid redu 99.8 3.6E-18 7.7E-23 150.4 17.4 205 10-221 2-228 (314)
35 PRK15461 NADH-dependent gamma- 99.8 1.6E-17 3.5E-22 146.0 20.2 166 12-186 2-174 (296)
36 KOG0409 Predicted dehydrogenas 99.8 1.3E-17 2.8E-22 141.6 18.6 177 6-189 30-212 (327)
37 PRK12490 6-phosphogluconate de 99.8 1.5E-17 3.3E-22 146.4 18.6 168 12-189 1-178 (299)
38 PTZ00345 glycerol-3-phosphate 99.8 4.9E-18 1.1E-22 152.1 14.9 211 9-232 9-264 (365)
39 PRK11559 garR tartronate semia 99.8 4.6E-17 1E-21 143.2 20.4 168 11-187 2-176 (296)
40 TIGR03376 glycerol3P_DH glycer 99.8 4.9E-18 1.1E-22 151.1 13.6 204 13-230 1-253 (342)
41 TIGR00872 gnd_rel 6-phosphoglu 99.8 7.3E-17 1.6E-21 142.0 20.8 166 12-186 1-174 (298)
42 PLN02350 phosphogluconate dehy 99.8 3.8E-17 8.1E-22 151.4 19.6 172 8-189 3-194 (493)
43 PRK06129 3-hydroxyacyl-CoA deh 99.8 1.3E-16 2.8E-21 141.1 21.4 161 12-183 3-191 (308)
44 PRK09599 6-phosphogluconate de 99.8 2E-16 4.3E-21 139.5 21.1 166 12-187 1-177 (301)
45 PRK12557 H(2)-dependent methyl 99.7 8E-16 1.7E-20 137.1 22.0 198 12-220 1-250 (342)
46 TIGR00112 proC pyrroline-5-car 99.7 1.1E-16 2.4E-21 136.9 15.9 219 35-267 10-242 (245)
47 PRK05808 3-hydroxybutyryl-CoA 99.7 4.2E-16 9.1E-21 136.2 18.4 151 11-174 3-182 (282)
48 PTZ00142 6-phosphogluconate de 99.7 3.6E-16 7.8E-21 144.6 17.6 168 11-188 1-187 (470)
49 PRK06130 3-hydroxybutyryl-CoA 99.7 7.3E-16 1.6E-20 136.5 18.5 154 11-176 4-181 (311)
50 PRK07531 bifunctional 3-hydrox 99.7 5.8E-15 1.3E-19 138.4 24.2 154 11-175 4-181 (495)
51 PLN02545 3-hydroxybutyryl-CoA 99.7 2E-15 4.4E-20 132.7 19.3 152 10-174 3-183 (295)
52 PRK14619 NAD(P)H-dependent gly 99.7 9.9E-17 2.1E-21 141.9 10.8 195 10-231 3-213 (308)
53 PRK00094 gpsA NAD(P)H-dependen 99.7 4.4E-16 9.5E-21 138.6 14.7 211 11-232 1-238 (325)
54 TIGR00873 gnd 6-phosphoglucona 99.7 6.5E-16 1.4E-20 142.9 16.3 168 13-189 1-185 (467)
55 PRK09260 3-hydroxybutyryl-CoA 99.7 2.3E-15 4.9E-20 132.0 18.9 151 12-174 2-181 (288)
56 PRK12439 NAD(P)H-dependent gly 99.7 8.1E-16 1.8E-20 137.8 15.5 212 8-233 4-244 (341)
57 PLN02858 fructose-bisphosphate 99.7 5.8E-15 1.2E-19 151.5 20.8 170 10-188 323-502 (1378)
58 PRK05479 ketol-acid reductoiso 99.7 7.7E-15 1.7E-19 129.3 18.5 187 9-202 15-220 (330)
59 PLN02858 fructose-bisphosphate 99.7 7.9E-15 1.7E-19 150.5 21.1 170 11-189 4-183 (1378)
60 KOG3124 Pyrroline-5-carboxylat 99.7 3.2E-15 7E-20 124.4 14.9 239 12-264 1-257 (267)
61 PRK07530 3-hydroxybutyryl-CoA 99.7 1.7E-14 3.6E-19 126.8 19.4 152 10-174 3-183 (292)
62 PRK07066 3-hydroxybutyryl-CoA 99.7 1.4E-14 3E-19 127.9 18.9 161 11-182 7-191 (321)
63 TIGR03026 NDP-sugDHase nucleot 99.6 1.8E-14 3.8E-19 132.4 20.2 170 12-187 1-212 (411)
64 PRK14618 NAD(P)H-dependent gly 99.6 2.3E-15 5E-20 134.3 13.5 206 11-233 4-238 (328)
65 PRK06035 3-hydroxyacyl-CoA deh 99.6 9.4E-15 2E-19 128.2 17.1 152 11-174 3-185 (291)
66 PRK11064 wecC UDP-N-acetyl-D-m 99.6 1.1E-13 2.4E-18 127.0 22.2 231 10-248 2-305 (415)
67 TIGR01724 hmd_rel H2-forming N 99.6 7.4E-14 1.6E-18 120.7 19.5 172 12-190 1-209 (341)
68 PF02737 3HCDH_N: 3-hydroxyacy 99.6 2.8E-14 6.1E-19 116.4 15.6 149 13-173 1-177 (180)
69 TIGR01915 npdG NADPH-dependent 99.6 4E-14 8.7E-19 119.2 15.8 162 12-180 1-194 (219)
70 COG2085 Predicted dinucleotide 99.6 5.5E-14 1.2E-18 114.8 13.9 160 11-177 1-182 (211)
71 PRK08229 2-dehydropantoate 2-r 99.6 4.1E-13 9E-18 120.4 20.8 163 11-185 2-187 (341)
72 PF10727 Rossmann-like: Rossma 99.6 2.4E-15 5.2E-20 114.9 4.0 116 8-127 7-127 (127)
73 PRK07819 3-hydroxybutyryl-CoA 99.6 4E-13 8.8E-18 117.5 18.4 152 11-174 5-186 (286)
74 PRK14620 NAD(P)H-dependent gly 99.6 1.6E-13 3.5E-18 122.4 15.8 203 12-229 1-237 (326)
75 PRK08268 3-hydroxy-acyl-CoA de 99.5 2.9E-13 6.2E-18 127.0 17.5 152 10-174 6-186 (507)
76 PF01210 NAD_Gly3P_dh_N: NAD-d 99.5 2.6E-14 5.7E-19 114.1 9.0 129 13-148 1-150 (157)
77 PF03807 F420_oxidored: NADP o 99.5 3.7E-14 8.1E-19 103.7 7.1 87 13-102 1-94 (96)
78 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.5 1.3E-12 2.7E-17 122.4 17.5 152 11-174 5-184 (503)
79 PRK15182 Vi polysaccharide bio 99.5 2.6E-12 5.6E-17 118.1 18.0 167 12-186 7-211 (425)
80 PRK09287 6-phosphogluconate de 99.4 4.1E-12 8.9E-17 117.3 15.1 158 22-189 1-177 (459)
81 PRK06249 2-dehydropantoate 2-r 99.4 4.7E-11 1E-15 105.9 21.2 231 8-249 2-286 (313)
82 PRK12921 2-dehydropantoate 2-r 99.4 2.3E-11 5E-16 107.3 18.6 155 12-174 1-176 (305)
83 COG1023 Gnd Predicted 6-phosph 99.4 8E-12 1.7E-16 103.1 14.1 166 12-186 1-175 (300)
84 PRK06522 2-dehydropantoate 2-r 99.4 1.6E-11 3.4E-16 108.3 17.0 154 12-173 1-172 (304)
85 PRK15057 UDP-glucose 6-dehydro 99.4 2.5E-11 5.5E-16 110.3 18.0 165 12-186 1-200 (388)
86 COG1250 FadB 3-hydroxyacyl-CoA 99.4 1.9E-11 4E-16 106.6 14.9 151 10-172 2-180 (307)
87 PRK11730 fadB multifunctional 99.4 3.5E-11 7.6E-16 117.4 18.4 152 11-174 313-492 (715)
88 TIGR02440 FadJ fatty oxidation 99.4 4.8E-11 1E-15 116.2 19.2 153 10-174 303-484 (699)
89 PF03721 UDPG_MGDP_dh_N: UDP-g 99.4 2.4E-12 5.3E-17 105.3 8.1 96 12-110 1-128 (185)
90 TIGR02437 FadB fatty oxidation 99.3 5.9E-11 1.3E-15 115.7 18.7 153 10-174 312-492 (714)
91 COG1004 Ugd Predicted UDP-gluc 99.3 5.7E-11 1.2E-15 105.3 15.8 163 12-179 1-203 (414)
92 TIGR02441 fa_ox_alpha_mit fatt 99.3 6.1E-11 1.3E-15 115.8 17.3 153 10-174 334-514 (737)
93 PRK11154 fadJ multifunctional 99.3 1.2E-10 2.5E-15 113.7 18.4 153 10-174 308-489 (708)
94 COG1893 ApbA Ketopantoate redu 99.3 1.5E-09 3.3E-14 95.7 21.2 232 12-250 1-278 (307)
95 PLN02353 probable UDP-glucose 99.3 6.7E-10 1.5E-14 103.2 19.3 170 11-184 1-217 (473)
96 COG4007 Predicted dehydrogenas 99.2 9.5E-10 2.1E-14 91.7 17.4 161 11-178 1-198 (340)
97 cd01065 NAD_bind_Shikimate_DH 99.2 3.2E-11 6.9E-16 95.8 6.5 115 9-129 17-142 (155)
98 COG0362 Gnd 6-phosphogluconate 99.2 3E-10 6.6E-15 100.1 11.8 151 10-169 2-163 (473)
99 PRK13403 ketol-acid reductoiso 99.2 2.5E-09 5.5E-14 93.4 16.7 186 9-202 14-218 (335)
100 COG0677 WecC UDP-N-acetyl-D-ma 99.1 2.5E-09 5.4E-14 94.8 16.5 153 12-174 10-206 (436)
101 KOG2711 Glycerol-3-phosphate d 99.1 7.4E-10 1.6E-14 96.0 10.7 210 10-232 20-277 (372)
102 PRK13243 glyoxylate reductase; 99.1 1.7E-09 3.6E-14 96.7 13.3 107 8-118 147-256 (333)
103 PRK05708 2-dehydropantoate 2-r 99.1 1.1E-08 2.4E-13 90.4 17.4 164 11-183 2-184 (305)
104 PLN03139 formate dehydrogenase 99.0 9.5E-09 2.1E-13 93.0 15.6 108 8-118 196-307 (386)
105 PRK07574 formate dehydrogenase 99.0 8.6E-09 1.9E-13 93.3 15.2 107 8-117 189-299 (385)
106 PRK12480 D-lactate dehydrogena 99.0 1.9E-09 4.2E-14 96.0 10.3 104 8-117 143-249 (330)
107 PF07991 IlvN: Acetohydroxy ac 99.0 1.7E-09 3.6E-14 85.1 7.9 151 10-168 3-161 (165)
108 COG0111 SerA Phosphoglycerate 99.0 9.6E-09 2.1E-13 91.1 13.1 109 8-119 139-250 (324)
109 TIGR02853 spore_dpaA dipicolin 99.0 6.5E-09 1.4E-13 90.9 11.4 94 8-107 148-245 (287)
110 PF02826 2-Hacid_dh_C: D-isome 99.0 1.5E-09 3.2E-14 88.5 6.8 106 8-117 33-142 (178)
111 PRK08605 D-lactate dehydrogena 98.9 3.4E-09 7.4E-14 94.6 8.9 104 8-116 143-250 (332)
112 PRK06436 glycerate dehydrogena 98.9 1.9E-08 4.2E-13 88.5 13.2 102 8-117 119-224 (303)
113 TIGR01327 PGDH D-3-phosphoglyc 98.9 2.1E-08 4.5E-13 94.9 13.6 108 8-118 135-245 (525)
114 PRK08269 3-hydroxybutyryl-CoA 98.9 3.8E-08 8.2E-13 87.2 14.5 142 22-174 1-179 (314)
115 KOG2305 3-hydroxyacyl-CoA dehy 98.9 5.3E-09 1.2E-13 85.9 8.0 156 11-177 3-187 (313)
116 PRK13581 D-3-phosphoglycerate 98.9 3.1E-08 6.7E-13 93.7 13.8 107 8-118 137-246 (526)
117 PF02558 ApbA: Ketopantoate re 98.9 1.7E-08 3.7E-13 79.7 9.7 109 14-127 1-124 (151)
118 KOG2304 3-hydroxyacyl-CoA dehy 98.8 4.3E-09 9.2E-14 86.4 5.5 155 8-173 8-195 (298)
119 PRK15409 bifunctional glyoxyla 98.8 1.1E-07 2.5E-12 84.4 14.2 107 8-118 142-252 (323)
120 PRK13302 putative L-aspartate 98.8 3.4E-08 7.4E-13 85.7 10.1 79 8-87 3-87 (271)
121 PRK15469 ghrA bifunctional gly 98.8 1.2E-07 2.6E-12 83.9 13.2 106 8-118 133-242 (312)
122 PLN02928 oxidoreductase family 98.8 1.4E-07 3E-12 84.8 13.4 107 8-118 156-278 (347)
123 PRK08306 dipicolinate synthase 98.7 1.2E-07 2.6E-12 83.4 11.9 94 8-107 149-246 (296)
124 PRK05225 ketol-acid reductoiso 98.7 4.9E-07 1.1E-11 82.3 15.6 159 9-174 34-208 (487)
125 COG1052 LdhA Lactate dehydroge 98.7 6.6E-08 1.4E-12 85.7 9.6 92 8-103 143-237 (324)
126 COG5495 Uncharacterized conser 98.7 2.2E-07 4.8E-12 76.6 11.7 180 5-192 4-187 (289)
127 TIGR00745 apbA_panE 2-dehydrop 98.7 9.2E-07 2E-11 77.4 16.5 147 21-174 1-166 (293)
128 PRK11790 D-3-phosphoglycerate 98.7 2.8E-07 6.1E-12 84.5 13.6 104 8-117 148-254 (409)
129 PRK13304 L-aspartate dehydroge 98.7 1.3E-07 2.7E-12 82.0 9.9 76 11-87 1-81 (265)
130 KOG2653 6-phosphogluconate deh 98.7 9.4E-08 2E-12 83.4 8.9 148 11-167 6-164 (487)
131 PRK00257 erythronate-4-phospha 98.7 6.6E-08 1.4E-12 87.5 8.2 102 8-116 113-221 (381)
132 PRK15438 erythronate-4-phospha 98.6 1.3E-07 2.8E-12 85.4 8.1 102 8-116 113-221 (378)
133 PF00670 AdoHcyase_NAD: S-aden 98.6 4.3E-07 9.3E-12 71.9 9.8 100 8-114 20-123 (162)
134 PRK08410 2-hydroxyacid dehydro 98.6 2.1E-07 4.5E-12 82.4 8.8 105 8-119 142-249 (311)
135 PLN02306 hydroxypyruvate reduc 98.6 1.3E-06 2.9E-11 79.3 13.2 93 8-103 162-273 (386)
136 PRK06932 glycerate dehydrogena 98.5 2.5E-07 5.3E-12 82.1 7.7 102 8-117 144-248 (314)
137 COG0059 IlvC Ketol-acid reduct 98.5 3.1E-06 6.6E-11 72.8 13.2 158 10-174 17-184 (338)
138 PRK06487 glycerate dehydrogena 98.5 3.4E-07 7.3E-12 81.3 7.8 101 8-117 145-248 (317)
139 TIGR01763 MalateDH_bact malate 98.5 1.4E-06 3E-11 77.0 10.6 87 12-103 2-119 (305)
140 PRK06223 malate dehydrogenase; 98.5 1.4E-06 3E-11 77.1 10.7 88 11-103 2-120 (307)
141 TIGR01723 hmd_TIGR 5,10-methen 98.5 4.3E-05 9.2E-10 65.0 18.7 129 53-191 126-257 (340)
142 PF01408 GFO_IDH_MocA: Oxidore 98.4 1.1E-06 2.4E-11 66.4 8.2 75 12-87 1-82 (120)
143 KOG0069 Glyoxylate/hydroxypyru 98.4 1.3E-06 2.7E-11 77.1 9.4 107 8-118 159-269 (336)
144 PRK00961 H(2)-dependent methyl 98.4 5.9E-05 1.3E-09 64.1 18.5 129 53-191 128-259 (342)
145 PTZ00082 L-lactate dehydrogena 98.4 2.6E-06 5.7E-11 75.7 11.0 114 8-126 3-153 (321)
146 PRK14194 bifunctional 5,10-met 98.4 1.4E-06 3E-11 76.0 8.3 77 7-103 155-232 (301)
147 cd01075 NAD_bind_Leu_Phe_Val_D 98.4 5.4E-06 1.2E-10 68.8 11.2 90 7-103 24-116 (200)
148 cd05213 NAD_bind_Glutamyl_tRNA 98.4 2.2E-06 4.7E-11 76.0 9.4 92 9-102 176-273 (311)
149 smart00859 Semialdhyde_dh Semi 98.3 2.2E-06 4.7E-11 65.3 7.6 88 13-105 1-102 (122)
150 PTZ00117 malate dehydrogenase; 98.3 4.3E-06 9.3E-11 74.4 10.4 112 10-126 4-147 (319)
151 PF00056 Ldh_1_N: lactate/mala 98.3 4.6E-06 1E-10 65.2 8.7 65 12-77 1-79 (141)
152 PTZ00075 Adenosylhomocysteinas 98.3 3.5E-06 7.6E-11 77.8 9.2 92 8-106 251-345 (476)
153 PF01118 Semialdhyde_dh: Semia 98.2 5.4E-06 1.2E-10 63.1 7.6 86 13-104 1-99 (121)
154 PRK14188 bifunctional 5,10-met 98.2 6.7E-06 1.5E-10 71.8 8.9 76 8-104 155-232 (296)
155 TIGR01921 DAP-DH diaminopimela 98.2 4.5E-06 9.8E-11 73.7 7.7 74 10-84 2-77 (324)
156 PRK05476 S-adenosyl-L-homocyst 98.2 1.7E-05 3.7E-10 72.7 11.3 91 9-106 210-303 (425)
157 PRK08300 acetaldehyde dehydrog 98.2 1.2E-05 2.7E-10 70.2 9.7 93 9-105 2-104 (302)
158 PLN02494 adenosylhomocysteinas 98.2 1.5E-05 3.3E-10 73.5 10.7 89 9-104 252-343 (477)
159 TIGR00936 ahcY adenosylhomocys 98.2 2E-05 4.4E-10 71.9 11.1 90 9-105 193-285 (406)
160 cd05292 LDH_2 A subgroup of L- 98.2 8.8E-06 1.9E-10 72.1 8.6 64 12-77 1-77 (308)
161 PF01113 DapB_N: Dihydrodipico 98.1 1.6E-05 3.5E-10 60.8 8.7 100 12-116 1-113 (124)
162 cd05297 GH4_alpha_glucosidase_ 98.1 1.7E-05 3.7E-10 73.2 10.6 67 12-79 1-86 (423)
163 cd01339 LDH-like_MDH L-lactate 98.1 1.2E-05 2.5E-10 71.1 9.0 61 14-76 1-75 (300)
164 TIGR00507 aroE shikimate 5-deh 98.1 5.5E-06 1.2E-10 72.0 6.9 96 10-105 116-217 (270)
165 cd05291 HicDH_like L-2-hydroxy 98.1 2.1E-05 4.5E-10 69.6 10.6 87 12-103 1-118 (306)
166 COG1748 LYS9 Saccharopine dehy 98.1 6.5E-06 1.4E-10 74.3 7.3 76 11-87 1-88 (389)
167 PLN02602 lactate dehydrogenase 98.1 2.9E-05 6.2E-10 69.8 10.9 63 12-76 38-114 (350)
168 COG0569 TrkA K+ transport syst 98.1 9.1E-06 2E-10 68.7 7.2 76 12-87 1-86 (225)
169 cd05293 LDH_1 A subgroup of L- 98.1 3.2E-05 7E-10 68.5 10.9 65 10-76 2-80 (312)
170 cd00401 AdoHcyase S-adenosyl-L 98.1 3.6E-05 7.8E-10 70.4 11.1 90 9-104 200-291 (413)
171 PRK06141 ornithine cyclodeamin 98.1 1.2E-05 2.5E-10 71.4 7.8 88 10-103 124-220 (314)
172 PRK00048 dihydrodipicolinate r 98.1 4E-05 8.6E-10 66.1 10.9 99 11-114 1-104 (257)
173 PF01488 Shikimate_DH: Shikima 98.0 1.6E-05 3.4E-10 61.7 6.7 89 8-102 9-109 (135)
174 PRK13301 putative L-aspartate 98.0 3.4E-05 7.4E-10 66.0 9.2 91 11-104 2-97 (267)
175 PRK00066 ldh L-lactate dehydro 98.0 5.5E-05 1.2E-09 67.1 10.9 67 9-77 4-83 (315)
176 cd01080 NAD_bind_m-THF_DH_Cycl 98.0 2.1E-05 4.5E-10 63.3 7.4 76 8-103 41-117 (168)
177 COG1712 Predicted dinucleotide 98.0 3.2E-05 6.9E-10 64.0 8.3 100 12-115 1-107 (255)
178 PRK13303 L-aspartate dehydroge 98.0 3.1E-05 6.7E-10 67.1 8.7 76 11-87 1-81 (265)
179 PRK04148 hypothetical protein; 98.0 4.5E-05 9.8E-10 58.6 8.3 90 10-103 16-112 (134)
180 PRK14179 bifunctional 5,10-met 98.0 1.9E-05 4.2E-10 68.4 7.0 77 8-104 155-232 (284)
181 TIGR02371 ala_DH_arch alanine 98.0 3.2E-05 6.9E-10 69.0 8.6 91 10-106 127-226 (325)
182 PRK00436 argC N-acetyl-gamma-g 97.9 3.6E-05 7.7E-10 69.2 8.1 90 11-104 2-101 (343)
183 TIGR00036 dapB dihydrodipicoli 97.9 0.00013 2.8E-09 63.2 10.9 99 12-115 2-113 (266)
184 PRK00045 hemA glutamyl-tRNA re 97.9 1.9E-05 4.2E-10 72.9 6.1 92 9-102 180-280 (423)
185 PRK04207 glyceraldehyde-3-phos 97.9 5.3E-05 1.2E-09 68.0 8.6 89 11-104 1-111 (341)
186 PRK11579 putative oxidoreducta 97.9 7.6E-05 1.6E-09 67.2 9.6 77 11-87 4-84 (346)
187 PRK00258 aroE shikimate 5-dehy 97.9 2.3E-05 4.9E-10 68.4 5.7 95 8-103 120-222 (278)
188 TIGR03215 ac_ald_DH_ac acetald 97.9 0.00014 2.9E-09 63.5 10.2 89 11-103 1-96 (285)
189 PRK07340 ornithine cyclodeamin 97.9 0.00012 2.6E-09 64.7 9.9 90 10-106 124-221 (304)
190 cd00300 LDH_like L-lactate deh 97.8 0.00012 2.5E-09 64.7 9.6 85 14-103 1-116 (300)
191 PRK14175 bifunctional 5,10-met 97.8 7.5E-05 1.6E-09 64.9 8.0 78 7-104 154-232 (286)
192 KOG0068 D-3-phosphoglycerate d 97.8 5.6E-05 1.2E-09 66.0 7.0 92 9-102 144-236 (406)
193 PLN02819 lysine-ketoglutarate 97.8 0.00014 2.9E-09 73.5 10.6 78 10-87 568-668 (1042)
194 COG0673 MviM Predicted dehydro 97.8 9.1E-05 2E-09 66.2 8.4 79 9-87 1-87 (342)
195 PRK12549 shikimate 5-dehydroge 97.8 5.2E-05 1.1E-09 66.4 6.4 93 9-102 125-227 (284)
196 cd00650 LDH_MDH_like NAD-depen 97.8 0.00018 4E-09 62.2 9.6 86 14-103 1-120 (263)
197 PF13380 CoA_binding_2: CoA bi 97.8 0.00023 4.9E-09 53.7 8.8 103 12-124 1-107 (116)
198 TIGR01850 argC N-acetyl-gamma- 97.7 0.00016 3.4E-09 65.1 9.1 88 12-104 1-101 (346)
199 KOG2666 UDP-glucose/GDP-mannos 97.7 0.00016 3.4E-09 62.8 8.5 153 11-167 1-199 (481)
200 TIGR01035 hemA glutamyl-tRNA r 97.7 0.0001 2.2E-09 68.0 7.9 91 9-102 178-277 (417)
201 cd01078 NAD_bind_H4MPT_DH NADP 97.7 0.00015 3.2E-09 59.8 7.7 92 8-104 25-131 (194)
202 PRK08618 ornithine cyclodeamin 97.7 0.00017 3.7E-09 64.3 8.5 90 10-106 126-225 (325)
203 cd05294 LDH-like_MDH_nadp A la 97.7 0.00026 5.7E-09 62.7 9.3 63 12-76 1-81 (309)
204 TIGR00518 alaDH alanine dehydr 97.7 0.00028 6E-09 64.1 9.3 90 10-105 166-270 (370)
205 PLN00203 glutamyl-tRNA reducta 97.7 0.00013 2.8E-09 68.9 7.3 93 9-102 264-369 (519)
206 PRK00683 murD UDP-N-acetylmura 97.6 0.00012 2.6E-09 67.6 6.5 68 10-78 2-70 (418)
207 cd05191 NAD_bind_amino_acid_DH 97.6 0.00045 9.7E-09 49.1 8.0 64 9-101 21-85 (86)
208 PRK06046 alanine dehydrogenase 97.6 0.00019 4.2E-09 64.0 7.5 90 10-106 128-227 (326)
209 TIGR01759 MalateDH-SF1 malate 97.6 0.00068 1.5E-08 60.4 10.9 91 10-103 2-130 (323)
210 PF02629 CoA_binding: CoA bind 97.6 7.7E-05 1.7E-09 54.3 4.1 76 11-87 3-82 (96)
211 TIGR02992 ectoine_eutC ectoine 97.6 0.00032 6.9E-09 62.6 8.8 88 11-104 129-226 (326)
212 PRK09496 trkA potassium transp 97.6 0.0002 4.3E-09 66.7 7.7 71 12-82 1-80 (453)
213 PRK13940 glutamyl-tRNA reducta 97.6 0.00027 5.9E-09 65.0 8.1 70 9-79 179-254 (414)
214 PRK15076 alpha-galactosidase; 97.6 0.00042 9.1E-09 64.1 9.3 67 11-78 1-86 (431)
215 PRK05442 malate dehydrogenase; 97.6 0.00077 1.7E-08 60.1 10.6 66 10-76 3-89 (326)
216 PRK14874 aspartate-semialdehyd 97.5 0.00026 5.7E-09 63.4 7.2 87 11-103 1-95 (334)
217 COG0373 HemA Glutamyl-tRNA red 97.5 0.0003 6.5E-09 64.1 7.4 90 9-102 176-274 (414)
218 PLN02968 Probable N-acetyl-gam 97.5 0.00049 1.1E-08 62.6 8.8 92 8-104 35-136 (381)
219 COG0039 Mdh Malate/lactate deh 97.5 0.001 2.2E-08 58.6 10.3 62 12-75 1-77 (313)
220 cd01338 MDH_choloroplast_like 97.5 0.00088 1.9E-08 59.7 10.2 66 11-77 2-88 (322)
221 cd05290 LDH_3 A subgroup of L- 97.5 0.00034 7.4E-09 61.8 7.2 63 13-77 1-78 (307)
222 PRK05671 aspartate-semialdehyd 97.5 0.00044 9.5E-09 61.9 7.9 89 10-104 3-99 (336)
223 PRK07589 ornithine cyclodeamin 97.5 0.00053 1.2E-08 61.5 8.2 92 11-106 129-229 (346)
224 cd01337 MDH_glyoxysomal_mitoch 97.5 0.00054 1.2E-08 60.6 8.1 88 12-103 1-118 (310)
225 PRK14192 bifunctional 5,10-met 97.4 0.00048 1E-08 60.1 7.5 77 7-103 155-232 (283)
226 TIGR00561 pntA NAD(P) transhyd 97.4 0.0012 2.7E-08 61.9 10.6 88 11-104 164-286 (511)
227 PRK14189 bifunctional 5,10-met 97.4 0.00051 1.1E-08 59.7 7.4 77 8-104 155-232 (285)
228 PRK06718 precorrin-2 dehydroge 97.4 0.0011 2.5E-08 54.9 9.2 80 8-87 7-90 (202)
229 PRK11863 N-acetyl-gamma-glutam 97.4 0.00058 1.3E-08 60.3 7.8 79 11-103 2-82 (313)
230 PRK09310 aroDE bifunctional 3- 97.4 0.00068 1.5E-08 63.7 8.5 70 8-79 329-402 (477)
231 PLN00112 malate dehydrogenase 97.4 0.0022 4.8E-08 59.2 11.6 91 10-103 99-227 (444)
232 PRK08291 ectoine utilization p 97.4 0.00093 2E-08 59.8 8.9 88 10-103 131-228 (330)
233 PLN02383 aspartate semialdehyd 97.4 0.00059 1.3E-08 61.3 7.5 88 9-103 5-101 (344)
234 COG4074 Mth H2-forming N5,N10- 97.4 0.035 7.6E-07 46.1 17.0 131 53-193 126-259 (343)
235 PRK06823 ornithine cyclodeamin 97.4 0.00095 2.1E-08 59.2 8.7 91 10-106 127-226 (315)
236 cd05212 NAD_bind_m-THF_DH_Cycl 97.4 0.001 2.2E-08 51.8 7.8 79 7-105 24-103 (140)
237 PF02254 TrkA_N: TrkA-N domain 97.4 0.00062 1.4E-08 50.9 6.4 67 14-80 1-75 (116)
238 PF10100 DUF2338: Uncharacteri 97.4 0.013 2.7E-07 53.0 15.4 168 11-181 1-207 (429)
239 PRK08040 putative semialdehyde 97.3 0.0006 1.3E-08 60.9 7.2 90 9-103 2-98 (336)
240 PRK06407 ornithine cyclodeamin 97.3 0.0012 2.6E-08 58.2 8.9 91 10-106 116-216 (301)
241 cd00704 MDH Malate dehydrogena 97.3 0.0013 2.8E-08 58.6 8.9 65 12-77 1-86 (323)
242 PF02882 THF_DHG_CYH_C: Tetrah 97.3 0.0016 3.4E-08 51.9 8.4 78 8-105 33-111 (160)
243 TIGR01019 sucCoAalpha succinyl 97.3 0.0016 3.4E-08 56.9 9.2 76 10-87 5-83 (286)
244 PTZ00325 malate dehydrogenase; 97.3 0.00078 1.7E-08 59.9 7.4 71 6-77 3-86 (321)
245 PRK06719 precorrin-2 dehydroge 97.3 0.0017 3.7E-08 51.6 8.7 79 8-87 10-90 (157)
246 COG2910 Putative NADH-flavin r 97.3 0.00052 1.1E-08 55.2 5.5 66 12-78 1-73 (211)
247 COG0002 ArgC Acetylglutamate s 97.3 0.00087 1.9E-08 59.3 7.4 90 10-103 1-102 (349)
248 TIGR01772 MDH_euk_gproteo mala 97.3 0.0017 3.6E-08 57.6 9.2 87 13-103 1-117 (312)
249 PLN00106 malate dehydrogenase 97.3 0.0027 6E-08 56.5 10.6 66 11-77 18-96 (323)
250 PRK10792 bifunctional 5,10-met 97.3 0.0011 2.3E-08 57.7 7.6 77 7-103 155-232 (285)
251 COG2423 Predicted ornithine cy 97.3 0.0011 2.5E-08 58.8 7.7 88 11-104 130-227 (330)
252 PRK10206 putative oxidoreducta 97.2 0.00093 2E-08 60.1 7.3 77 11-87 1-84 (344)
253 cd01336 MDH_cytoplasmic_cytoso 97.2 0.0024 5.2E-08 57.0 9.7 66 11-77 2-88 (325)
254 COG0169 AroE Shikimate 5-dehyd 97.2 0.0013 2.8E-08 57.3 7.7 114 10-128 125-251 (283)
255 TIGR01757 Malate-DH_plant mala 97.2 0.005 1.1E-07 56.0 11.7 92 9-103 42-171 (387)
256 PRK03659 glutathione-regulated 97.2 0.00088 1.9E-08 64.8 7.1 71 11-81 400-478 (601)
257 PRK09424 pntA NAD(P) transhydr 97.2 0.0026 5.7E-08 59.8 10.0 89 10-103 164-286 (509)
258 cd01079 NAD_bind_m-THF_DH NAD 97.2 0.0013 2.8E-08 53.8 6.7 92 8-105 59-159 (197)
259 TIGR01761 thiaz-red thiazoliny 97.2 0.0022 4.8E-08 57.5 8.8 76 10-87 2-86 (343)
260 PRK06728 aspartate-semialdehyd 97.2 0.0018 3.8E-08 58.1 8.2 90 9-104 3-101 (347)
261 PRK10669 putative cation:proto 97.2 0.0011 2.3E-08 63.7 7.3 69 11-79 417-493 (558)
262 PF02423 OCD_Mu_crystall: Orni 97.2 0.001 2.2E-08 59.0 6.5 91 11-105 128-227 (313)
263 TIGR01758 MDH_euk_cyt malate d 97.2 0.0028 6E-08 56.6 9.2 64 13-77 1-85 (324)
264 PF03435 Saccharop_dh: Sacchar 97.1 0.00063 1.4E-08 62.1 5.2 84 14-102 1-98 (386)
265 PF13460 NAD_binding_10: NADH( 97.1 0.0026 5.6E-08 51.4 8.1 62 14-77 1-70 (183)
266 TIGR01771 L-LDH-NAD L-lactate 97.1 0.0022 4.8E-08 56.5 7.9 61 16-77 1-74 (299)
267 PRK05472 redox-sensing transcr 97.1 0.0008 1.7E-08 56.3 4.8 78 10-87 83-166 (213)
268 PRK14191 bifunctional 5,10-met 97.1 0.0015 3.3E-08 56.7 6.6 76 8-103 154-230 (285)
269 cd05311 NAD_bind_2_malic_enz N 97.1 0.0034 7.4E-08 53.0 8.6 89 9-103 23-129 (226)
270 PRK05678 succinyl-CoA syntheta 97.1 0.0043 9.4E-08 54.3 9.3 76 10-87 7-85 (291)
271 PRK08664 aspartate-semialdehyd 97.0 0.0031 6.7E-08 56.9 8.5 89 10-104 2-109 (349)
272 COG2344 AT-rich DNA-binding pr 97.0 0.0011 2.4E-08 53.4 4.9 78 10-87 83-166 (211)
273 PRK00421 murC UDP-N-acetylmura 97.0 0.0027 5.9E-08 59.4 8.3 65 10-75 6-74 (461)
274 PF13241 NAD_binding_7: Putati 97.0 0.0038 8.3E-08 45.9 7.5 75 9-87 5-80 (103)
275 PRK05086 malate dehydrogenase; 97.0 0.0041 9E-08 55.2 8.9 65 12-77 1-79 (312)
276 PRK14176 bifunctional 5,10-met 97.0 0.0028 6.1E-08 55.1 7.6 78 7-104 160-238 (287)
277 PRK12749 quinate/shikimate deh 97.0 0.0029 6.2E-08 55.5 7.6 92 9-102 122-233 (288)
278 TIGR01296 asd_B aspartate-semi 97.0 0.0015 3.2E-08 58.7 5.9 84 13-103 1-93 (339)
279 TIGR01470 cysG_Nterm siroheme 97.0 0.0047 1E-07 51.4 8.4 76 9-86 7-89 (205)
280 TIGR01809 Shik-DH-AROM shikima 97.0 0.0025 5.4E-08 55.8 7.1 68 10-78 124-201 (282)
281 COG1064 AdhP Zn-dependent alco 97.0 0.0055 1.2E-07 54.5 9.3 77 11-87 167-249 (339)
282 PF01262 AlaDh_PNT_C: Alanine 97.0 0.0023 5.1E-08 51.4 6.4 91 10-103 19-140 (168)
283 cd05211 NAD_bind_Glu_Leu_Phe_V 97.0 0.003 6.6E-08 53.0 7.2 74 7-80 19-110 (217)
284 TIGR01851 argC_other N-acetyl- 96.9 0.0038 8.2E-08 55.0 7.9 78 12-103 2-81 (310)
285 PRK03562 glutathione-regulated 96.9 0.0023 5.1E-08 62.0 7.3 70 11-80 400-477 (621)
286 PRK14982 acyl-ACP reductase; P 96.9 0.0024 5.1E-08 57.1 6.6 90 8-102 152-246 (340)
287 PRK09496 trkA potassium transp 96.9 0.0032 7E-08 58.6 7.9 71 9-79 229-309 (453)
288 PRK01438 murD UDP-N-acetylmura 96.9 0.0037 8E-08 58.8 8.3 70 7-77 12-88 (480)
289 COG0136 Asd Aspartate-semialde 96.9 0.0046 9.9E-08 54.7 8.1 88 11-104 1-99 (334)
290 PRK06349 homoserine dehydrogen 96.9 0.0039 8.4E-08 57.8 8.1 77 10-86 2-92 (426)
291 PRK02006 murD UDP-N-acetylmura 96.9 0.0035 7.5E-08 59.3 7.9 67 10-77 6-81 (498)
292 PRK06598 aspartate-semialdehyd 96.9 0.0035 7.7E-08 56.6 7.4 87 11-103 1-99 (369)
293 PRK01710 murD UDP-N-acetylmura 96.9 0.0043 9.3E-08 58.1 8.3 64 10-74 13-84 (458)
294 PRK14178 bifunctional 5,10-met 96.9 0.0029 6.3E-08 54.8 6.5 78 7-104 148-226 (279)
295 PRK14172 bifunctional 5,10-met 96.9 0.0036 7.8E-08 54.2 7.0 76 8-103 155-231 (278)
296 PRK14169 bifunctional 5,10-met 96.8 0.0035 7.5E-08 54.5 6.8 77 8-104 153-230 (282)
297 TIGR00978 asd_EA aspartate-sem 96.8 0.0045 9.8E-08 55.6 7.9 87 12-104 1-106 (341)
298 PRK14190 bifunctional 5,10-met 96.8 0.0034 7.3E-08 54.6 6.7 77 8-104 155-232 (284)
299 PRK14177 bifunctional 5,10-met 96.8 0.0043 9.3E-08 53.9 7.2 77 8-104 156-233 (284)
300 CHL00194 ycf39 Ycf39; Provisio 96.8 0.0035 7.6E-08 55.6 7.0 64 12-76 1-73 (317)
301 PRK14170 bifunctional 5,10-met 96.8 0.0047 1E-07 53.7 7.4 77 8-104 154-231 (284)
302 PRK00141 murD UDP-N-acetylmura 96.8 0.005 1.1E-07 57.8 8.3 64 10-74 14-81 (473)
303 PRK14180 bifunctional 5,10-met 96.8 0.0036 7.9E-08 54.3 6.8 76 8-103 155-231 (282)
304 PRK12475 thiamine/molybdopteri 96.8 0.0061 1.3E-07 54.7 8.5 35 10-44 23-58 (338)
305 PRK01390 murD UDP-N-acetylmura 96.8 0.0043 9.3E-08 58.1 7.8 64 10-74 8-72 (460)
306 PRK14186 bifunctional 5,10-met 96.8 0.0053 1.1E-07 53.7 7.4 78 7-104 154-232 (297)
307 PRK14166 bifunctional 5,10-met 96.8 0.0043 9.2E-08 53.9 6.8 76 8-103 154-230 (282)
308 PF02056 Glyco_hydro_4: Family 96.8 0.013 2.8E-07 47.7 9.2 75 13-88 1-96 (183)
309 PRK14173 bifunctional 5,10-met 96.8 0.005 1.1E-07 53.6 7.3 77 8-104 152-229 (287)
310 PRK12550 shikimate 5-dehydroge 96.8 0.0024 5.2E-08 55.5 5.3 89 11-102 122-216 (272)
311 PF03720 UDPG_MGDP_dh_C: UDP-g 96.8 0.0038 8.2E-08 46.2 5.6 79 23-104 19-103 (106)
312 PRK14183 bifunctional 5,10-met 96.7 0.0052 1.1E-07 53.3 7.1 78 7-104 153-231 (281)
313 PRK07236 hypothetical protein; 96.7 0.0024 5.2E-08 58.2 5.4 38 7-44 2-39 (386)
314 PRK14187 bifunctional 5,10-met 96.7 0.0057 1.2E-07 53.4 7.3 77 7-103 156-233 (294)
315 PLN02516 methylenetetrahydrofo 96.7 0.0072 1.6E-07 52.9 7.9 77 8-104 164-241 (299)
316 cd01076 NAD_bind_1_Glu_DH NAD( 96.7 0.0057 1.2E-07 51.7 7.1 79 8-87 28-127 (227)
317 PRK02318 mannitol-1-phosphate 96.7 0.0019 4.2E-08 58.9 4.5 76 12-87 1-100 (381)
318 PRK14106 murD UDP-N-acetylmura 96.7 0.008 1.7E-07 56.0 8.6 68 9-77 3-78 (450)
319 TIGR02356 adenyl_thiF thiazole 96.7 0.0068 1.5E-07 50.3 7.3 35 10-44 20-55 (202)
320 cd05197 GH4_glycoside_hydrolas 96.7 0.031 6.7E-07 51.8 12.2 66 12-78 1-85 (425)
321 PRK03369 murD UDP-N-acetylmura 96.7 0.0083 1.8E-07 56.6 8.6 66 10-76 11-79 (488)
322 PRK06199 ornithine cyclodeamin 96.7 0.0071 1.5E-07 55.1 7.9 89 11-103 155-260 (379)
323 COG4408 Uncharacterized protei 96.6 0.075 1.6E-06 46.7 13.4 180 10-193 3-223 (431)
324 PLN02520 bifunctional 3-dehydr 96.6 0.0051 1.1E-07 58.6 6.8 95 9-103 377-476 (529)
325 TIGR01087 murD UDP-N-acetylmur 96.6 0.0053 1.1E-07 56.9 6.8 62 13-75 1-70 (433)
326 PLN02897 tetrahydrofolate dehy 96.6 0.007 1.5E-07 53.8 7.1 78 7-104 210-288 (345)
327 COG0289 DapB Dihydrodipicolina 96.6 0.027 5.9E-07 48.1 10.3 101 11-116 2-115 (266)
328 PLN02616 tetrahydrofolate dehy 96.6 0.0067 1.5E-07 54.2 7.0 76 8-103 228-304 (364)
329 PF03447 NAD_binding_3: Homose 96.6 0.0077 1.7E-07 45.2 6.4 77 18-99 1-87 (117)
330 PF05368 NmrA: NmrA-like famil 96.6 0.0095 2.1E-07 50.2 7.7 63 14-77 1-74 (233)
331 PRK14193 bifunctional 5,10-met 96.6 0.0072 1.6E-07 52.5 6.8 77 8-104 155-234 (284)
332 PRK08644 thiamine biosynthesis 96.5 0.016 3.4E-07 48.5 8.6 35 10-44 27-62 (212)
333 PRK14171 bifunctional 5,10-met 96.5 0.011 2.3E-07 51.6 7.5 76 8-103 156-232 (288)
334 TIGR02354 thiF_fam2 thiamine b 96.5 0.0045 9.8E-08 51.3 4.9 34 10-43 20-54 (200)
335 PRK14181 bifunctional 5,10-met 96.5 0.0088 1.9E-07 52.1 6.8 77 8-104 150-231 (287)
336 PRK14182 bifunctional 5,10-met 96.5 0.0098 2.1E-07 51.7 7.0 77 8-104 154-231 (282)
337 PRK14573 bifunctional D-alanyl 96.4 0.011 2.4E-07 59.2 8.3 64 10-74 3-70 (809)
338 PRK07688 thiamine/molybdopteri 96.4 0.013 2.7E-07 52.7 7.7 35 10-44 23-58 (339)
339 cd05298 GH4_GlvA_pagL_like Gly 96.4 0.04 8.6E-07 51.2 11.1 66 12-78 1-85 (437)
340 COG0026 PurK Phosphoribosylami 96.4 0.011 2.4E-07 52.8 6.9 74 11-85 1-83 (375)
341 PRK12809 putative oxidoreducta 96.4 0.015 3.3E-07 56.7 8.6 69 9-78 308-406 (639)
342 TIGR01082 murC UDP-N-acetylmur 96.4 0.012 2.5E-07 54.9 7.6 61 13-74 1-65 (448)
343 PRK14027 quinate/shikimate deh 96.4 0.0098 2.1E-07 52.0 6.5 92 10-102 126-229 (283)
344 PRK02472 murD UDP-N-acetylmura 96.4 0.019 4E-07 53.5 8.7 65 10-75 4-76 (447)
345 PRK12769 putative oxidoreducta 96.3 0.017 3.7E-07 56.5 8.8 67 10-77 326-422 (654)
346 PRK14168 bifunctional 5,10-met 96.3 0.015 3.3E-07 50.9 7.5 76 8-103 158-238 (297)
347 COG0499 SAM1 S-adenosylhomocys 96.3 0.015 3.2E-07 51.8 7.2 87 9-102 207-296 (420)
348 PRK12409 D-amino acid dehydrog 96.3 0.0059 1.3E-07 56.1 5.0 33 12-44 2-34 (410)
349 KOG2741 Dimeric dihydrodiol de 96.3 0.021 4.6E-07 50.5 8.1 78 9-87 4-92 (351)
350 TIGR02717 AcCoA-syn-alpha acet 96.3 0.017 3.6E-07 54.0 7.9 73 10-87 6-84 (447)
351 PRK12548 shikimate 5-dehydroge 96.3 0.016 3.5E-07 50.8 7.5 93 9-102 124-236 (289)
352 PF00070 Pyr_redox: Pyridine n 96.3 0.01 2.3E-07 41.2 5.0 33 13-45 1-33 (80)
353 PRK14184 bifunctional 5,10-met 96.3 0.011 2.5E-07 51.4 6.2 76 8-103 154-234 (286)
354 PRK14174 bifunctional 5,10-met 96.2 0.013 2.8E-07 51.3 6.6 76 8-103 156-236 (295)
355 PRK04308 murD UDP-N-acetylmura 96.2 0.019 4.1E-07 53.5 8.0 65 10-75 4-75 (445)
356 TIGR01546 GAPDH-II_archae glyc 96.2 0.018 3.9E-07 51.3 7.5 65 14-79 1-87 (333)
357 cd05296 GH4_P_beta_glucosidase 96.2 0.064 1.4E-06 49.6 11.2 65 12-77 1-85 (419)
358 COG1063 Tdh Threonine dehydrog 96.2 0.036 7.9E-07 50.0 9.5 67 13-79 171-250 (350)
359 PRK08163 salicylate hydroxylas 96.2 0.0073 1.6E-07 55.1 5.1 35 11-45 4-38 (396)
360 TIGR01318 gltD_gamma_fam gluta 96.2 0.027 5.9E-07 52.8 9.0 68 10-78 140-237 (467)
361 COG1486 CelF Alpha-galactosida 96.2 0.05 1.1E-06 50.0 10.1 70 9-79 1-89 (442)
362 PRK14185 bifunctional 5,10-met 96.1 0.017 3.6E-07 50.5 6.6 77 8-104 154-235 (293)
363 PRK07494 2-octaprenyl-6-methox 96.1 0.009 2E-07 54.4 5.2 36 9-44 5-40 (388)
364 PRK06753 hypothetical protein; 96.1 0.0078 1.7E-07 54.4 4.8 34 12-45 1-34 (373)
365 PRK06270 homoserine dehydrogen 96.1 0.026 5.7E-07 50.7 8.0 68 11-78 2-100 (341)
366 PRK08773 2-octaprenyl-3-methyl 96.1 0.0096 2.1E-07 54.3 5.2 36 9-44 4-39 (392)
367 PF00899 ThiF: ThiF family; I 96.1 0.01 2.2E-07 45.8 4.6 34 11-44 2-36 (135)
368 COG0190 FolD 5,10-methylene-te 96.1 0.024 5.2E-07 49.0 7.2 77 8-104 153-230 (283)
369 PRK00711 D-amino acid dehydrog 96.1 0.0089 1.9E-07 54.9 5.0 33 12-44 1-33 (416)
370 PF14748 P5CR_dimer: Pyrroline 96.0 0.013 2.8E-07 43.5 4.8 92 173-267 1-103 (107)
371 PRK14167 bifunctional 5,10-met 96.0 0.024 5.2E-07 49.7 7.2 76 8-103 154-234 (297)
372 cd01483 E1_enzyme_family Super 96.0 0.011 2.5E-07 45.9 4.7 32 13-44 1-33 (143)
373 PRK05562 precorrin-2 dehydroge 96.0 0.11 2.3E-06 43.7 10.8 76 10-87 24-105 (223)
374 PRK03803 murD UDP-N-acetylmura 96.0 0.024 5.3E-07 52.8 7.6 61 12-74 7-75 (448)
375 TIGR01745 asd_gamma aspartate- 96.0 0.018 3.8E-07 52.0 6.3 87 12-103 1-98 (366)
376 PRK03815 murD UDP-N-acetylmura 96.0 0.021 4.5E-07 52.5 6.9 63 12-77 1-66 (401)
377 PRK12814 putative NADPH-depend 95.9 0.041 9E-07 53.8 9.2 35 10-44 192-226 (652)
378 COG0771 MurD UDP-N-acetylmuram 95.9 0.021 4.6E-07 52.9 6.6 67 10-77 6-81 (448)
379 PRK08132 FAD-dependent oxidore 95.9 0.013 2.9E-07 56.0 5.6 44 1-44 12-56 (547)
380 PRK05868 hypothetical protein; 95.9 0.011 2.5E-07 53.7 4.8 34 11-44 1-34 (372)
381 PF13450 NAD_binding_8: NAD(P) 95.9 0.015 3.2E-07 39.3 4.2 30 16-45 1-30 (68)
382 PRK08849 2-octaprenyl-3-methyl 95.9 0.012 2.7E-07 53.5 5.0 34 11-44 3-36 (384)
383 COG1648 CysG Siroheme synthase 95.9 0.15 3.3E-06 42.5 11.0 78 8-87 9-92 (210)
384 PRK06847 hypothetical protein; 95.9 0.013 2.9E-07 52.9 5.1 35 10-44 3-37 (375)
385 PF01494 FAD_binding_3: FAD bi 95.8 0.013 2.9E-07 51.9 4.9 33 12-44 2-34 (356)
386 PRK07364 2-octaprenyl-6-methox 95.8 0.013 2.9E-07 53.7 5.0 36 9-44 16-51 (415)
387 TIGR01532 E4PD_g-proteo D-eryt 95.8 0.021 4.5E-07 50.9 6.0 87 13-103 1-121 (325)
388 PTZ00187 succinyl-CoA syntheta 95.8 0.1 2.3E-06 46.1 10.3 77 10-87 28-108 (317)
389 PRK06392 homoserine dehydrogen 95.8 0.043 9.3E-07 49.0 7.9 66 12-77 1-91 (326)
390 PRK02705 murD UDP-N-acetylmura 95.8 0.028 6E-07 52.6 7.0 62 13-75 2-76 (459)
391 cd01487 E1_ThiF_like E1_ThiF_l 95.7 0.016 3.5E-07 46.9 4.6 32 13-44 1-33 (174)
392 PRK12771 putative glutamate sy 95.7 0.05 1.1E-06 52.3 8.7 69 9-78 135-233 (564)
393 PRK06185 hypothetical protein; 95.7 0.015 3.3E-07 53.3 5.0 36 9-44 4-39 (407)
394 PRK05732 2-octaprenyl-6-methox 95.7 0.015 3.2E-07 53.0 4.9 35 9-43 1-38 (395)
395 PRK06019 phosphoribosylaminoim 95.7 0.046 9.9E-07 49.7 8.0 35 11-45 2-36 (372)
396 KOG1495 Lactate dehydrogenase 95.7 0.08 1.7E-06 45.4 8.6 66 10-77 19-98 (332)
397 PRK08013 oxidoreductase; Provi 95.7 0.016 3.5E-07 53.1 4.9 34 11-44 3-36 (400)
398 KOG1502 Flavonol reductase/cin 95.7 0.049 1.1E-06 48.2 7.6 65 10-75 5-86 (327)
399 PRK07538 hypothetical protein; 95.7 0.015 3.2E-07 53.6 4.6 33 12-44 1-33 (413)
400 COG0654 UbiH 2-polyprenyl-6-me 95.7 0.016 3.5E-07 52.9 4.8 33 11-43 2-34 (387)
401 PRK03806 murD UDP-N-acetylmura 95.6 0.059 1.3E-06 50.1 8.5 64 10-74 5-72 (438)
402 cd08230 glucose_DH Glucose deh 95.6 0.12 2.6E-06 46.4 10.2 69 10-78 172-249 (355)
403 COG0686 Ald Alanine dehydrogen 95.6 0.014 3E-07 51.0 3.8 90 11-103 168-269 (371)
404 PRK07045 putative monooxygenas 95.6 0.02 4.2E-07 52.2 5.0 35 10-44 4-38 (388)
405 PRK07588 hypothetical protein; 95.5 0.018 3.9E-07 52.5 4.7 33 12-44 1-33 (391)
406 TIGR02360 pbenz_hydroxyl 4-hyd 95.5 0.02 4.3E-07 52.4 4.9 34 11-44 2-35 (390)
407 TIGR03649 ergot_EASG ergot alk 95.4 0.028 6E-07 48.8 5.4 33 13-45 1-34 (285)
408 PRK01747 mnmC bifunctional tRN 95.4 0.028 6.1E-07 55.1 5.6 33 12-44 261-293 (662)
409 PRK06475 salicylate hydroxylas 95.3 0.023 5E-07 52.0 4.8 33 12-44 3-35 (400)
410 PRK08374 homoserine dehydrogen 95.3 0.038 8.3E-07 49.6 6.0 85 11-99 2-119 (336)
411 PRK08020 ubiF 2-octaprenyl-3-m 95.3 0.025 5.3E-07 51.6 4.9 35 10-44 4-38 (391)
412 PLN02172 flavin-containing mon 95.3 0.032 7E-07 52.2 5.7 37 9-45 8-44 (461)
413 KOG1399 Flavin-containing mono 95.3 0.023 4.9E-07 52.9 4.6 38 8-45 3-40 (448)
414 PRK06617 2-octaprenyl-6-methox 95.3 0.024 5.1E-07 51.5 4.7 33 11-43 1-33 (374)
415 PRK11259 solA N-methyltryptoph 95.3 0.026 5.6E-07 51.0 4.9 33 12-44 4-36 (376)
416 PRK06126 hypothetical protein; 95.3 0.027 5.9E-07 53.8 5.2 35 10-44 6-40 (545)
417 PRK09880 L-idonate 5-dehydroge 95.3 0.13 2.9E-06 45.9 9.3 67 11-77 170-245 (343)
418 COG0665 DadA Glycine/D-amino a 95.2 0.032 7E-07 50.5 5.3 36 9-44 2-37 (387)
419 PF01266 DAO: FAD dependent ox 95.2 0.031 6.7E-07 49.6 5.0 32 13-44 1-32 (358)
420 PRK08850 2-octaprenyl-6-methox 95.2 0.031 6.7E-07 51.3 5.1 33 11-43 4-36 (405)
421 TIGR03366 HpnZ_proposed putati 95.2 0.19 4.1E-06 43.6 9.8 46 10-55 120-167 (280)
422 PRK09126 hypothetical protein; 95.2 0.029 6.2E-07 51.1 4.7 34 11-44 3-36 (392)
423 TIGR03219 salicylate_mono sali 95.2 0.027 5.9E-07 51.8 4.6 34 12-45 1-35 (414)
424 PLN00093 geranylgeranyl diphos 95.1 0.04 8.6E-07 51.5 5.7 35 10-44 38-72 (450)
425 PLN02695 GDP-D-mannose-3',5'-e 95.1 0.044 9.5E-07 49.8 5.8 36 9-44 19-55 (370)
426 PRK05714 2-octaprenyl-3-methyl 95.1 0.029 6.4E-07 51.4 4.7 33 12-44 3-35 (405)
427 PRK08762 molybdopterin biosynt 95.1 0.059 1.3E-06 49.1 6.5 34 10-43 134-168 (376)
428 TIGR01988 Ubi-OHases Ubiquinon 95.1 0.029 6.3E-07 50.7 4.4 32 13-44 1-32 (385)
429 PRK05335 tRNA (uracil-5-)-meth 95.0 0.036 7.7E-07 51.1 4.8 33 11-43 2-34 (436)
430 KOG0399 Glutamate synthase [Am 95.0 0.093 2E-06 53.3 7.8 71 6-77 1780-1880(2142)
431 PRK08243 4-hydroxybenzoate 3-m 95.0 0.036 7.7E-07 50.7 4.8 34 11-44 2-35 (392)
432 PRK11728 hydroxyglutarate oxid 95.0 0.036 7.9E-07 50.6 4.8 33 12-44 3-37 (393)
433 cd00757 ThiF_MoeB_HesA_family 94.9 0.045 9.8E-07 46.3 5.0 35 10-44 20-55 (228)
434 PLN00125 Succinyl-CoA ligase [ 94.9 0.21 4.4E-06 44.0 9.2 75 10-87 11-89 (300)
435 PRK01368 murD UDP-N-acetylmura 94.9 0.097 2.1E-06 49.0 7.6 65 8-74 3-70 (454)
436 PRK05600 thiamine biosynthesis 94.9 0.077 1.7E-06 48.3 6.7 35 10-44 40-75 (370)
437 TIGR02822 adh_fam_2 zinc-bindi 94.9 0.22 4.7E-06 44.4 9.5 68 11-78 166-234 (329)
438 PRK06901 aspartate-semialdehyd 94.9 0.032 6.9E-07 49.3 4.0 87 10-103 2-96 (322)
439 PLN02477 glutamate dehydrogena 94.9 0.088 1.9E-06 48.4 6.9 37 7-43 202-239 (410)
440 PRK06184 hypothetical protein; 94.9 0.041 8.8E-07 52.1 5.0 35 10-44 2-36 (502)
441 PRK07326 short chain dehydroge 94.8 0.061 1.3E-06 45.1 5.5 36 10-45 5-41 (237)
442 PRK04690 murD UDP-N-acetylmura 94.8 0.11 2.4E-06 48.7 7.8 65 10-75 7-77 (468)
443 PLN02927 antheraxanthin epoxid 94.8 0.039 8.5E-07 53.8 4.8 35 10-44 80-114 (668)
444 PLN00141 Tic62-NAD(P)-related 94.8 0.054 1.2E-06 46.2 5.2 37 9-45 15-52 (251)
445 PRK10537 voltage-gated potassi 94.8 0.086 1.9E-06 48.3 6.7 68 11-79 240-314 (393)
446 PRK12828 short chain dehydroge 94.8 0.064 1.4E-06 44.8 5.6 37 9-45 5-42 (239)
447 PRK10637 cysG siroheme synthas 94.8 0.32 6.9E-06 45.6 10.6 90 8-103 9-104 (457)
448 PLN02985 squalene monooxygenas 94.7 0.055 1.2E-06 51.4 5.6 35 10-44 42-76 (514)
449 PRK05653 fabG 3-ketoacyl-(acyl 94.7 0.066 1.4E-06 44.9 5.5 37 9-45 3-40 (246)
450 cd00755 YgdL_like Family of ac 94.7 0.054 1.2E-06 45.9 4.9 35 10-44 10-45 (231)
451 KOG1370 S-adenosylhomocysteine 94.7 0.14 2.9E-06 44.8 7.2 85 12-103 215-302 (434)
452 PRK06183 mhpA 3-(3-hydroxyphen 94.7 0.058 1.2E-06 51.6 5.6 36 9-44 8-43 (538)
453 PRK08955 glyceraldehyde-3-phos 94.7 0.19 4.1E-06 45.0 8.4 88 12-103 3-120 (334)
454 PRK07608 ubiquinone biosynthes 94.7 0.049 1.1E-06 49.4 4.9 35 11-45 5-39 (388)
455 PRK06124 gluconate 5-dehydroge 94.6 0.086 1.9E-06 44.8 6.0 41 5-45 5-46 (256)
456 PRK05690 molybdopterin biosynt 94.6 0.064 1.4E-06 45.9 5.1 35 10-44 31-66 (245)
457 TIGR01377 soxA_mon sarcosine o 94.6 0.046 9.9E-07 49.5 4.5 32 13-44 2-33 (380)
458 PLN02896 cinnamyl-alcohol dehy 94.6 0.069 1.5E-06 48.0 5.6 39 7-45 6-45 (353)
459 cd01485 E1-1_like Ubiquitin ac 94.6 0.057 1.2E-06 44.6 4.7 35 10-44 18-53 (198)
460 PRK08328 hypothetical protein; 94.6 0.06 1.3E-06 45.6 4.9 35 10-44 26-61 (231)
461 TIGR01984 UbiH 2-polyprenyl-6- 94.6 0.044 9.5E-07 49.7 4.3 32 13-44 1-33 (382)
462 TIGR02355 moeB molybdopterin s 94.6 0.063 1.4E-06 45.8 4.9 35 10-44 23-58 (240)
463 PLN03209 translocon at the inn 94.5 0.084 1.8E-06 50.5 6.2 36 10-45 79-115 (576)
464 PRK07231 fabG 3-ketoacyl-(acyl 94.5 0.076 1.6E-06 44.8 5.5 37 9-45 3-40 (251)
465 PRK14031 glutamate dehydrogena 94.5 0.29 6.4E-06 45.4 9.5 35 7-41 224-259 (444)
466 PRK13535 erythrose 4-phosphate 94.5 0.078 1.7E-06 47.4 5.6 24 11-34 1-24 (336)
467 TIGR03736 PRTRC_ThiF PRTRC sys 94.5 0.071 1.5E-06 45.5 5.1 35 10-44 10-55 (244)
468 PRK00676 hemA glutamyl-tRNA re 94.5 0.072 1.6E-06 47.6 5.3 63 8-75 171-234 (338)
469 PLN02948 phosphoribosylaminoim 94.5 0.16 3.4E-06 49.0 8.0 37 9-45 20-56 (577)
470 PTZ00367 squalene epoxidase; P 94.5 0.06 1.3E-06 51.8 5.1 35 10-44 32-66 (567)
471 PRK12826 3-ketoacyl-(acyl-carr 94.5 0.078 1.7E-06 44.7 5.4 37 9-45 4-41 (251)
472 cd01492 Aos1_SUMO Ubiquitin ac 94.5 0.063 1.4E-06 44.3 4.6 35 10-44 20-55 (197)
473 PLN02358 glyceraldehyde-3-phos 94.4 0.55 1.2E-05 42.1 10.8 35 10-44 4-40 (338)
474 PRK15116 sulfur acceptor prote 94.4 0.071 1.5E-06 46.2 5.0 35 10-44 29-64 (268)
475 PF00743 FMO-like: Flavin-bind 94.4 0.056 1.2E-06 51.5 4.8 34 12-45 2-35 (531)
476 COG1090 Predicted nucleoside-d 94.4 0.077 1.7E-06 45.7 5.0 61 14-75 1-64 (297)
477 PRK15181 Vi polysaccharide bio 94.3 0.074 1.6E-06 47.8 5.1 36 9-44 13-49 (348)
478 TIGR03364 HpnW_proposed FAD de 94.3 0.062 1.3E-06 48.4 4.7 32 13-44 2-33 (365)
479 COG0702 Predicted nucleoside-d 94.3 0.12 2.7E-06 44.1 6.3 64 12-76 1-72 (275)
480 TIGR03570 NeuD_NnaD sugar O-ac 94.3 0.23 5E-06 40.4 7.7 75 13-87 1-79 (201)
481 PRK04663 murD UDP-N-acetylmura 94.3 0.16 3.4E-06 47.3 7.4 62 12-75 8-76 (438)
482 PRK06113 7-alpha-hydroxysteroi 94.3 0.12 2.6E-06 44.0 6.1 45 1-45 1-46 (255)
483 TIGR02622 CDP_4_6_dhtase CDP-g 94.3 0.082 1.8E-06 47.4 5.3 36 10-45 3-39 (349)
484 PRK11908 NAD-dependent epimera 94.2 0.075 1.6E-06 47.6 4.9 35 11-45 1-37 (347)
485 PLN02657 3,8-divinyl protochlo 94.2 0.084 1.8E-06 48.4 5.3 37 9-45 58-95 (390)
486 PRK12939 short chain dehydroge 94.2 0.11 2.5E-06 43.7 5.8 38 8-45 4-42 (250)
487 PRK12770 putative glutamate sy 94.1 0.1 2.2E-06 47.0 5.6 38 7-44 14-51 (352)
488 PRK07454 short chain dehydroge 94.1 0.11 2.5E-06 43.6 5.6 36 10-45 5-41 (241)
489 KOG2614 Kynurenine 3-monooxyge 94.1 0.079 1.7E-06 48.1 4.7 34 11-44 2-35 (420)
490 COG3380 Predicted NAD/FAD-depe 94.1 0.087 1.9E-06 45.4 4.7 33 12-44 2-34 (331)
491 TIGR01214 rmlD dTDP-4-dehydror 94.1 0.097 2.1E-06 45.3 5.3 31 13-43 1-32 (287)
492 cd08239 THR_DH_like L-threonin 94.1 0.32 7E-06 43.2 8.7 44 11-54 164-209 (339)
493 COG3349 Uncharacterized conser 94.1 0.069 1.5E-06 49.8 4.4 34 12-45 1-34 (485)
494 PRK08703 short chain dehydroge 94.1 0.11 2.5E-06 43.6 5.5 37 9-45 4-41 (239)
495 PRK08017 oxidoreductase; Provi 94.0 0.18 3.9E-06 42.7 6.8 34 12-45 3-37 (256)
496 cd08237 ribitol-5-phosphate_DH 94.0 0.32 7E-06 43.5 8.7 65 11-77 164-232 (341)
497 TIGR02028 ChlP geranylgeranyl 94.0 0.076 1.6E-06 48.7 4.7 33 12-44 1-33 (398)
498 PRK07403 glyceraldehyde-3-phos 94.0 0.26 5.7E-06 44.0 7.9 31 11-41 1-34 (337)
499 PLN02353 probable UDP-glucose 94.0 0.36 7.8E-06 45.4 9.1 95 9-106 322-451 (473)
500 PRK08244 hypothetical protein; 94.0 0.079 1.7E-06 50.0 4.8 33 12-44 3-35 (493)
No 1
>PLN02256 arogenate dehydrogenase
Probab=100.00 E-value=4.3e-48 Score=338.97 Aligned_cols=262 Identities=58% Similarity=0.948 Sum_probs=230.7
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL 87 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l 87 (275)
.+.+++|+|||+|.||++++..|.+.|++|++|++++....+.+.|+...++.++++..++|+||+|||++.+.+++.++
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l 112 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSL 112 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhh
Confidence 45678999999999999999999999999999999975455666788777777775224699999999999999999987
Q ss_pred --CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeee----ecCChHHHHHHHH
Q 023897 88 --PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKV----RIRDEATCSSFLR 161 (275)
Q Consensus 88 --~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~ 161 (275)
+. ++++++++|++|+|+.+.+.+++.++.+.+|+++|||+|++.++..+.+.++++++. ...+++..+++++
T Consensus 113 ~~~~--l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 190 (304)
T PLN02256 113 PLQR--LKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLD 190 (304)
T ss_pred hhhc--cCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHH
Confidence 34 788999999999999999999998877778999999999998766677787777753 2336678899999
Q ss_pred HHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcccccCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHHH
Q 023897 162 IFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQ 241 (275)
Q Consensus 162 l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~~~~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~~ 241 (275)
+|+.+|++++.+++++||+++|++||+||+++.+|.+...+..+++++||||++|++.+.+.++|+||.+|+..|+++++
T Consensus 191 l~~~lGa~v~~~~~eeHD~~vA~iShLpH~la~~L~~~~~~~~~~~~~gfrd~tria~r~~~~~p~lw~dI~~~N~~~~~ 270 (304)
T PLN02256 191 IFEEEGCRMVEMSCEEHDRYAAGSQFITHTVGRILGKMELESTPINTKGYETLLRLVENTSSDSFDLYYGLFMYNPNATE 270 (304)
T ss_pred HHHHCCCEEEEeCHHHHhHHHHhhhhHHHHHHHHHHHcCCcccccccccHHHHHHHHHhhcCCCHHHHHHHHHHChHHHH
Confidence 99999999999999999999999999999999999987655567999999999999998888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchhHHHhhcCCC
Q 023897 242 ELLDLEAAFEKVKHKLQQKMEEVQLEQSPN 271 (275)
Q Consensus 242 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 271 (275)
++++|++.|+++++.|....-..||+|-=.
T Consensus 271 ~i~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 300 (304)
T PLN02256 271 ELERLELAFDSVKKQLFGRLHDVLRKQLFE 300 (304)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Confidence 999999999999999999999999887543
No 2
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-47 Score=330.20 Aligned_cols=252 Identities=23% Similarity=0.416 Sum_probs=217.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh---hhHHHHcCceE--ecCh-HHHhccCCCEEEEecCchhHHHH
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH---SQLCHRSGISF--FSDK-RAFLEADNDVILISTSILSLSEV 83 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~---~~~a~~~g~~~--~~~~-~~~~~~~aD~iilavp~~~~~~v 83 (275)
..++|+|+|+|.||+++|+.|++.|+.+.+++++.. .+.+.+.|+.. ..+. .+. ..++|+||+|||...+.++
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~-~~~aD~VivavPi~~~~~~ 80 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEA-AAEADLVIVAVPIEATEEV 80 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhh-cccCCEEEEeccHHHHHHH
Confidence 458999999999999999999999998766655542 45666677632 2333 343 4679999999999999999
Q ss_pred hhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHH
Q 023897 84 LNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRI 162 (275)
Q Consensus 84 ~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l 162 (275)
++++ +. +++|++|+|++|+|..+.+.+++.++...+|+++||||||+...+.+++..+++|+....+.+.+..+.++
T Consensus 81 l~~l~~~--l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~ 158 (279)
T COG0287 81 LKELAPH--LKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRL 158 (279)
T ss_pred HHHhccc--CCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHH
Confidence 9999 87 99999999999999999999999987655899999999996333567889999999876677789999999
Q ss_pred HHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcccc-------cCcccCcchHHHHHHhhcCCCCChhhHHHHHHH
Q 023897 163 FESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQ-------STSMNTKGFETLIRLKESSVNDSFDLFSGLYIH 235 (275)
Q Consensus 163 ~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~~~-------~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~ 235 (275)
|+.+|++++++++++||++++.+|||||+++++|+....+ ..+|++++||+++|++.++ |+||.+|+.+
T Consensus 159 ~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as~~frd~tRia~~~----P~m~~dI~~~ 234 (279)
T COG0287 159 WEALGARLVEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLASGGFRDITRIASSD----PEMYADIQLS 234 (279)
T ss_pred HHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhccccchhhHHHHHcCC----hHHHHHHHHh
Confidence 9999999999999999999999999999999999864221 1579999999999999887 9999999999
Q ss_pred CHHH-HHHHHHHHHHHHHHHHHHhcchhHHHhhc
Q 023897 236 NRFA-KQELLDLEAAFEKVKHKLQQKMEEVQLEQ 268 (275)
Q Consensus 236 N~~~-~~~l~~~~~~l~~~~~~l~~~~~~~~~~~ 268 (275)
|+++ ++.+++|.++|+++++.++.+|.+.|.+.
T Consensus 235 N~~~~l~~i~~~~~~l~~l~~~i~~~d~~~l~~~ 268 (279)
T COG0287 235 NKEALLEAIERFAKSLDELKELIENGDAEALADL 268 (279)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 9996 59999999999999999999999887653
No 3
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=100.00 E-value=1.3e-44 Score=311.58 Aligned_cols=235 Identities=22% Similarity=0.347 Sum_probs=196.2
Q ss_pred HHHHHHHCC--CeEEEEcCChh-hhHHHHcCc--eEecChHHHhccCCCEEEEecCchhHHHHhhcC-CCCCCCCCcEEE
Q 023897 26 LAKTMIKQG--HILRATSRTDH-SQLCHRSGI--SFFSDKRAFLEADNDVILISTSILSLSEVLNSL-PVHCLQRRTLIA 99 (275)
Q Consensus 26 la~~L~~~g--~~V~~~dr~~~-~~~a~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-~~~~l~~~~iv~ 99 (275)
+|++|+++| ++|++||+++. ...+.+.|+ ...++ .+. ++++|+||+|||+..+.++++++ ++ ++++++|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~-~~~~DlvvlavP~~~~~~~l~~~~~~--~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEA-VEDADLVVLAVPVSAIEDVLEEIAPY--LKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHH-GGCCSEEEE-S-HHHHHHHHHHHHCG--S-TTSEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhH-hcCCCEEEEcCCHHHHHHHHHHhhhh--cCCCcEEE
Confidence 688999998 69999999995 567778887 33333 343 48999999999999999999999 87 89999999
Q ss_pred eCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc------CCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEc
Q 023897 100 DVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEM 173 (275)
Q Consensus 100 d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~ 173 (275)
|++|+|..+.+.+++.++.+.+||++|||+||+.++ +.|+|.++++|+...++.+.++.++++++.+|++++.+
T Consensus 77 Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 77 DVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM 156 (258)
T ss_dssp E--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE-
T ss_pred EeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc
Confidence 999999999999999888788999999999997543 45789999999887667788999999999999999999
Q ss_pred ChhHHHHHHHHhhhhHHHHHHHHhhc----ccc---cCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHH-HHHHH
Q 023897 174 SCEEHDKVAAKSQFLTHTIGRVLSEL----EIQ---STSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAK-QELLD 245 (275)
Q Consensus 174 ~~~~hD~~~a~~~~lp~~~a~~l~~~----~~~---~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~-~~l~~ 245 (275)
++++||+++|++||+||+++.+|+.. ..+ ...+++++|++++|++.++ |+||.+|+..|++++ +.|++
T Consensus 157 ~~eeHD~~~A~vshlpH~~a~al~~~~~~~~~~~~~~~~~a~~~frd~tRia~~~----p~l~~~I~~~N~~~~~~~l~~ 232 (258)
T PF02153_consen 157 DAEEHDRIMAYVSHLPHLLASALANTLAELSSDDPDILRLAGGGFRDMTRIASSD----PELWADIFLSNPENLLEALDE 232 (258)
T ss_dssp -HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGTHHHHHHHGGGGS-----HHHHHHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHhhcchhHHhhcccccCC----hHHHHHHHHHCHHHHHHHHHH
Confidence 99999999999999999999988872 211 2468999999999999877 999999999999965 99999
Q ss_pred HHHHHHHHHHHHhcchhHHHhhc
Q 023897 246 LEAAFEKVKHKLQQKMEEVQLEQ 268 (275)
Q Consensus 246 ~~~~l~~~~~~l~~~~~~~~~~~ 268 (275)
|+++|++++++|+++|.++|++.
T Consensus 233 ~~~~L~~l~~~l~~~d~~~l~~~ 255 (258)
T PF02153_consen 233 FIKELNELREALEAGDEEELEEL 255 (258)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999998764
No 4
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=100.00 E-value=2.4e-44 Score=313.68 Aligned_cols=246 Identities=21% Similarity=0.262 Sum_probs=210.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCce--EecChHHHhccCCCEEEEecCchhHHHHhhcC-
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGIS--FFSDKRAFLEADNDVILISTSILSLSEVLNSL- 87 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~--~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l- 87 (275)
|||+|||+|.||+++|..|+++|++|++||++++ .+.+.+.|.. ..++. +. +.++|+||+|+|++.+.++++++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~-~~~aDlVilavp~~~~~~~~~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDL-SL-LKDCDLVILALPIGLLLPPSEQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCH-hH-hcCCCEEEEcCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999999985 4556666642 23344 33 48999999999999999999999
Q ss_pred CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc------CCccccceeeeeeecCChHHHHHHHH
Q 023897 88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEATCSSFLR 161 (275)
Q Consensus 88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~~~ 161 (275)
+. ++++++++|++|+|..+.+.+.+.. .+|++.|||+|++..+ ..+.|.++++++....+++.++.+++
T Consensus 79 ~~--l~~~~ii~d~~Svk~~~~~~~~~~~---~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~ 153 (279)
T PRK07417 79 PA--LPPEAIVTDVGSVKAPIVEAWEKLH---PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEE 153 (279)
T ss_pred Hh--CCCCcEEEeCcchHHHHHHHHHHhh---CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHH
Confidence 77 7889999999999998877776543 3599999999998532 13678888898877667888999999
Q ss_pred HHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcc-----ccc----CcccCcchHHHHHHhhcCCCCChhhHHHH
Q 023897 162 IFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELE-----IQS----TSMNTKGFETLIRLKESSVNDSFDLFSGL 232 (275)
Q Consensus 162 l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~-----~~~----~~l~~~~~~~~~rl~~~~~~~~p~~~~~i 232 (275)
+++.+|++++++++++||++++++||+||+++.+|++.. .+. ..++++||||+||++.++ |+||.+|
T Consensus 154 l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~~~~~~~~~~~~~~~~~~~gfrd~tRia~~~----p~~w~~i 229 (279)
T PRK07417 154 LAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALIQTCGTEKDPSVLKLAQNLASSGFADTSRVGGGN----PELGVMM 229 (279)
T ss_pred HHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHHHHHhhcccchhhHHhhhhccCcccccccccCCC----hHHHHHH
Confidence 999999999999999999999999999999998887532 111 369999999999999887 9999999
Q ss_pred HHHCHHHH-HHHHHHHHHHHHHHHHHhcchhHHHhhc
Q 023897 233 YIHNRFAK-QELLDLEAAFEKVKHKLQQKMEEVQLEQ 268 (275)
Q Consensus 233 ~~~N~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~~ 268 (275)
+..|++++ +.|++|+++|+++++.|+++|.+.|++.
T Consensus 230 ~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~ 266 (279)
T PRK07417 230 AEYNRAALLRSLASYRQSLDQLEELIEQENWSALEQK 266 (279)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999986 9999999999999999999999887654
No 5
>PRK08507 prephenate dehydrogenase; Validated
Probab=100.00 E-value=2e-42 Score=301.19 Aligned_cols=247 Identities=22% Similarity=0.290 Sum_probs=207.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChh-hhHHHHcCce-EecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDH-SQLCHRSGIS-FFSDKRAFLEADNDVILISTSILSLSEVLNSL 87 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~-~~~a~~~g~~-~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l 87 (275)
|||+|||+|+||+++|..|.+.|+ +|++|||+++ .+.+.+.|+. ...+++++ .++|+||+|||++.+.+++.++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~--~~aD~Vilavp~~~~~~~~~~l 78 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEEL--KKCDVIFLAIPVDAIIEILPKL 78 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHH--hcCCEEEEeCcHHHHHHHHHHH
Confidence 589999999999999999999986 7999999985 4556667763 34566664 3599999999999999999988
Q ss_pred CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcC------CccccceeeeeeecCChHHHHHHHH
Q 023897 88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQN------GWKDFAFVYEKVRIRDEATCSSFLR 161 (275)
Q Consensus 88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~ 161 (275)
.. ++++++|+|++|+|..+.+.+.+.. +.+|++.|||+|.+..+. .+.|..+++++....+++.++++++
T Consensus 79 ~~--l~~~~iv~d~gs~k~~i~~~~~~~~--~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~ 154 (275)
T PRK08507 79 LD--IKENTTIIDLGSTKAKIIESVPKHI--RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKE 154 (275)
T ss_pred hc--cCCCCEEEECccchHHHHHHHHHhc--CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHH
Confidence 22 6788999999999998888776653 257999999988653321 2467778888765556778899999
Q ss_pred HHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcc---ccc---CcccCcchHHHHHHhhcCCCCChhhHHHHHHH
Q 023897 162 IFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELE---IQS---TSMNTKGFETLIRLKESSVNDSFDLFSGLYIH 235 (275)
Q Consensus 162 l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~---~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~ 235 (275)
+|+.+|++++++++++||++++++||+||+++.+|++.. .+. ..+.++||||++|++.++ |+||.+|+..
T Consensus 155 l~~~~G~~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~~~~~~~~~~~~~~~gfrd~tria~~~----p~l~~~i~~~ 230 (275)
T PRK08507 155 IFSGLGMRIVYMDAKEHDLHAAYISHLPHIISFALANTVLKEEDERNIFDLAGGGFRSMSRLAKSS----PAMWSDIFKQ 230 (275)
T ss_pred HHHHhCCEEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHhhcccchhhhhhcccCC----HHHHHHHHHH
Confidence 999999999999999999999999999999999888642 222 468999999999999876 9999999999
Q ss_pred CHHHH-HHHHHHHHHHHHHHHHHhcchhHHHhhc
Q 023897 236 NRFAK-QELLDLEAAFEKVKHKLQQKMEEVQLEQ 268 (275)
Q Consensus 236 N~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~~ 268 (275)
|++++ +.|++|++.|+++++.|+++|.+.|.+.
T Consensus 231 N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~~ 264 (275)
T PRK08507 231 NKENVLEAIDEFIKELEQFKQLIENEDWEELEEW 264 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99887 9999999999999999999998887653
No 6
>PRK06545 prephenate dehydrogenase; Validated
Probab=100.00 E-value=7.3e-43 Score=314.11 Aligned_cols=249 Identities=20% Similarity=0.281 Sum_probs=211.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hH--HHHcCc--eEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QL--CHRSGI--SFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~--a~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
++|+|||+|+||+++|.+|++.|++|.+|++++.. .. +...|+ ...++++++ ++++|+||+|||++.+.+++.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~aDlVilavP~~~~~~vl~~ 79 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRA-AAEADLIVLAVPVDATAALLAE 79 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHH-hcCCCEEEEeCCHHHHHHHHHH
Confidence 47999999999999999999999999999888742 22 223333 234566675 4899999999999999999999
Q ss_pred C-C-CCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc------CCccccceeeeeeecCChHHHHH
Q 023897 87 L-P-VHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEATCSS 158 (275)
Q Consensus 87 l-~-~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~~~~ 158 (275)
+ + . ++++++++|++|+|..+.+.+++.++...+|+++|||+|++.++ ..+.|.++++++....+++.++.
T Consensus 80 l~~~~--l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~ 157 (359)
T PRK06545 80 LADLE--LKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAE 157 (359)
T ss_pred HhhcC--CCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHH
Confidence 9 5 4 67899999999999999888888766667899999999997542 34678889999876667888999
Q ss_pred HHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhc-ccc---cCcccCcchHHHHHHhhcCCCCChhhHHHHHH
Q 023897 159 FLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSEL-EIQ---STSMNTKGFETLIRLKESSVNDSFDLFSGLYI 234 (275)
Q Consensus 159 ~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~-~~~---~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~ 234 (275)
++++++.+|++++++++++||+++|++||+||+++.+|+.. +.+ ...|++++|||++||+.++ |+||.+|+.
T Consensus 158 v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al~~~~~~~~~~~~~la~~gfrd~tRia~~~----p~~w~di~~ 233 (359)
T PRK06545 158 LKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSLAARLAGEHPLALRLAAGGFRDITRIASSD----PGMWRDILE 233 (359)
T ss_pred HHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHHHHhhccCchHHHhhhcccccCCccccCCC----HHHHHHHHH
Confidence 99999999999999999999999999999999999998753 322 2468999999999999765 999999999
Q ss_pred HCHHHH-HHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897 235 HNRFAK-QELLDLEAAFEKVKHKLQQKMEEVQLE 267 (275)
Q Consensus 235 ~N~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~ 267 (275)
+|+.++ +.|++|+++|+++++.|+++|.+.|++
T Consensus 234 ~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~ 267 (359)
T PRK06545 234 SNAEALLDALDEWIEDLDRARDALESGDAEAIAE 267 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999886 999999999999999999999876544
No 7
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=100.00 E-value=2e-42 Score=305.70 Aligned_cols=253 Identities=18% Similarity=0.299 Sum_probs=214.3
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChh-hhHHHHcCc--eEecChHHHhccCCCEEEEecCchhHHHH
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDH-SQLCHRSGI--SFFSDKRAFLEADNDVILISTSILSLSEV 83 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~-~~~a~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~~v 83 (275)
+..++|+|||+|.||++++..|.+.|+ +|++|||+++ .+.+.+.|+ ....+.+++ +.++|+||+|+|+....++
T Consensus 4 ~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~-~~~aDvViiavp~~~~~~v 82 (307)
T PRK07502 4 PLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEA-VKGADLVILCVPVGASGAV 82 (307)
T ss_pred cCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHH-hcCCCEEEECCCHHHHHHH
Confidence 344799999999999999999999985 8999999985 455666665 344566665 4899999999999998899
Q ss_pred hhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCc------CCccccceeeeeeecCChHHH
Q 023897 84 LNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEATC 156 (275)
Q Consensus 84 ~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~~ 156 (275)
++++ +. ++++++++|++|+|..+.+.+.+.++.+.+|+++|||+|++..+ +.+.|..+++++..+.+++.+
T Consensus 83 ~~~l~~~--l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~ 160 (307)
T PRK07502 83 AAEIAPH--LKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAV 160 (307)
T ss_pred HHHHHhh--CCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHH
Confidence 9888 76 78899999999999888888877776667899999999887532 234667777887665577788
Q ss_pred HHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcc--cc------cCcccCcchHHHHHHhhcCCCCChhh
Q 023897 157 SSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELE--IQ------STSMNTKGFETLIRLKESSVNDSFDL 228 (275)
Q Consensus 157 ~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~--~~------~~~l~~~~~~~~~rl~~~~~~~~p~~ 228 (275)
+.++++++.+|.+++++++++||+++|++||+||+++.+|+... .+ ...++++||||++|++.++ |+|
T Consensus 161 ~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~~~~~~~~~~~~~~~~gfrd~tRia~~~----~~~ 236 (307)
T PRK07502 161 ARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTADDLERVTESEVIKYSASGFRDFTRIAASD----PTM 236 (307)
T ss_pred HHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHhhhcccchHHHHHhcccccccccccccCC----hHH
Confidence 99999999999999999999999999999999999999887532 11 1368999999999999887 999
Q ss_pred HHHHHHHCHHHH-HHHHHHHHHHHHHHHHHhcchhHHHhhc
Q 023897 229 FSGLYIHNRFAK-QELLDLEAAFEKVKHKLQQKMEEVQLEQ 268 (275)
Q Consensus 229 ~~~i~~~N~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~~ 268 (275)
|.+|+..|++++ +.|++|++.|+++++.|+++|.++|.++
T Consensus 237 w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~ 277 (307)
T PRK07502 237 WRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDALFDL 277 (307)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999996 9999999999999999999998876553
No 8
>PRK08818 prephenate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-42 Score=307.74 Aligned_cols=235 Identities=18% Similarity=0.250 Sum_probs=194.3
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHC-CCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897 10 STLKIGIIGF-GPFGQFLAKTMIKQ-GHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL 87 (275)
Q Consensus 10 ~~~~I~IIG~-G~mG~sla~~L~~~-g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l 87 (275)
.+++|+|||+ |.||+++|++|++. |++|+++|++.+ ...++++. +.++|+||+|||+..+.++++++
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~----------~~~~~~~~-v~~aDlVilavPv~~~~~~l~~l 71 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP----------GSLDPATL-LQRADVLIFSAPIRHTAALIEEY 71 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc----------ccCCHHHH-hcCCCEEEEeCCHHHHHHHHHHH
Confidence 4689999999 99999999999975 889999998632 12355564 48999999999999999999998
Q ss_pred -CCC-CCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHH
Q 023897 88 -PVH-CLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFES 165 (275)
Q Consensus 88 -~~~-~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (275)
++. .++++++|+|++|+|..+++.+.+. ..+||++|||+|++.+ ..|+|.++++|+.. ..+..++++++++.
T Consensus 72 ~~~~~~l~~~~iVtDVgSvK~~i~~~~~~~---~~~fVG~HPMaG~E~s-~lf~g~~~iltp~~--~~~~~~~v~~l~~~ 145 (370)
T PRK08818 72 VALAGGRAAGQLWLDVTSIKQAPVAAMLAS---QAEVVGLHPMTAPPKS-PTLKGRVMVVCEAR--LQHWSPWVQSLCSA 145 (370)
T ss_pred hhhhcCCCCCeEEEECCCCcHHHHHHHHhc---CCCEEeeCCCCCCCCC-cccCCCeEEEeCCC--chhHHHHHHHHHHH
Confidence 531 1589999999999999888877543 4579999999999976 35889999998753 44557889999999
Q ss_pred cCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcc----c---c--c-CcccCcchH----HHHHHhhcCCCCChhhHHH
Q 023897 166 EGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELE----I---Q--S-TSMNTKGFE----TLIRLKESSVNDSFDLFSG 231 (275)
Q Consensus 166 ~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~----~---~--~-~~l~~~~~~----~~~rl~~~~~~~~p~~~~~ 231 (275)
+|++++++++++||+++|++|||||+...+++... . + . ..+.+++|| +++|++.++ |+||.+
T Consensus 146 ~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~~~~~~~~~~~~~~~f~~~gFr~d~t~iTRIAss~----P~mW~d 221 (370)
T PRK08818 146 LQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLRDYAPLLGELRALMPYRSASFELDTAVIARILSLN----PSIYED 221 (370)
T ss_pred cCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccccchhhHHHhhhcchhhcCC----HHHHHH
Confidence 99999999999999999999988887655444321 1 1 1 268999999 457999887 999999
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Q 023897 232 LYIHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQ 265 (275)
Q Consensus 232 i~~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 265 (275)
|+..|++..+.|++|+++|+++++.|+++|.+.+
T Consensus 222 I~~~N~~i~~~l~~~~~~L~~l~~~i~~~D~~~~ 255 (370)
T PRK08818 222 IQFGNPYVGEMLDRLLAQLQELRALVAQGDDAAR 255 (370)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999994459999999999999999999998553
No 9
>PRK08655 prephenate dehydrogenase; Provisional
Probab=100.00 E-value=5.7e-42 Score=314.60 Aligned_cols=248 Identities=24% Similarity=0.380 Sum_probs=217.6
Q ss_pred CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC-
Q 023897 12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL- 87 (275)
Q Consensus 12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l- 87 (275)
|||+||| +|.||+++|..|.+.|++|++|+|+++. ..+.+.|+...+++.++ +.++|+||+|+|++.+.+++.++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~-~~~aDvVIlavp~~~~~~vl~~l~ 79 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDA-AKDADIVIISVPINVTEDVIKEVA 79 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHH-hccCCEEEEecCHHHHHHHHHHHH
Confidence 6899998 8999999999999999999999999853 45667788777777775 48999999999999999999999
Q ss_pred CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcC
Q 023897 88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEG 167 (275)
Q Consensus 88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G 167 (275)
+. ++++++++|++|+|..+.+.+.+.++.+.+|+++|||+||... .+.|..+++++....+++.+++++++|+.+|
T Consensus 80 ~~--l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~--~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G 155 (437)
T PRK08655 80 PH--VKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTP--SLKGQVVILTPTEKRSNPWFDKVKNFLEKEG 155 (437)
T ss_pred hh--CCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCc--ccCCCEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 77 8899999999999999999999888777899999999998753 5678888888766557788899999999999
Q ss_pred CeEEEcChhHHHHHHHHhhhhHHHHHHHHhhc----cccc---CcccCcchHHH----HHHhhcCCCCChhhHHHHHHHC
Q 023897 168 CKMLEMSCEEHDKVAAKSQFLTHTIGRVLSEL----EIQS---TSMNTKGFETL----IRLKESSVNDSFDLFSGLYIHN 236 (275)
Q Consensus 168 ~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~----~~~~---~~l~~~~~~~~----~rl~~~~~~~~p~~~~~i~~~N 236 (275)
++++++++++||++++.+||+||+++.+++.. +.+. ..+++++||++ +|++.++ |+||.+|+.+|
T Consensus 156 ~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~~frd~~~~~tRIa~~~----p~lw~dI~~~N 231 (437)
T PRK08655 156 ARVIVTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASPIYELMIDIIGRILGQN----PYLYASIQMNN 231 (437)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcChhhHHHHHHHHHHhcCC----HHHHHHHHHhC
Confidence 99999999999999999999999998877753 4442 46999999998 7777655 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHhhc
Q 023897 237 RFAKQELLDLEAAFEKVKHKLQQKMEEVQLEQ 268 (275)
Q Consensus 237 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~ 268 (275)
|+..+.+++|+++|+++++.|+++|.+.|.+.
T Consensus 232 ~~~~~~l~~~~~~l~~l~~~l~~~D~~~l~~~ 263 (437)
T PRK08655 232 PQIPEIHETFIKECEELSELVKNGDREEFVER 263 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 96669999999999999999999999987653
No 10
>PLN02712 arogenate dehydrogenase
Probab=100.00 E-value=1.4e-41 Score=324.87 Aligned_cols=259 Identities=53% Similarity=0.897 Sum_probs=224.4
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC-
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL- 87 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l- 87 (275)
..+|+|+|||+|+||+++|+.|.+.|++|++|||+.....+.+.|+....++++++..++|+||+|||+..+.+++.++
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~ 129 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLP 129 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhh
Confidence 4568999999999999999999999999999999875556777888777788874335699999999999999999988
Q ss_pred -CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecC----ChHHHHHHHHH
Q 023897 88 -PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIR----DEATCSSFLRI 162 (275)
Q Consensus 88 -~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~l 162 (275)
+. ++++++|+|++|+|..+.+.+.+.++.+..|+++|||+|++....++.+..+++++.... ..+.+++++++
T Consensus 130 ~~~--l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 207 (667)
T PLN02712 130 LQR--LKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEV 207 (667)
T ss_pred hhc--CCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHH
Confidence 34 788999999999999999999998887788999999999996444566776766642211 12346778899
Q ss_pred HHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcccccCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHHHH
Q 023897 163 FESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQE 242 (275)
Q Consensus 163 ~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~~~~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~~~ 242 (275)
|+.+|++++.+++++||+++|.+|||||+++.+|.....+..++.+++|+.+.+++.+..+++|+||++|+..|++..+.
T Consensus 208 ~~~lGa~v~~ms~eeHD~~~A~vshLpH~la~~L~~~~~~~~~~~~~~~~~~l~l~~Ria~~~p~L~~dI~~~N~~~~~~ 287 (667)
T PLN02712 208 FEREGCKMVEMSCTEHDKYAAESQFITHTVGRVLEMLKLESTPINTKGYESLLDLVENTCGDSFDLYYGLFMYNKNSLEM 287 (667)
T ss_pred HHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccHHHHHHHHHHHhcCCHHHHHHHHHhCHHHHHH
Confidence 99999999999999999999999999999999999877656678899999999999999899999999999999966699
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHhhcC
Q 023897 243 LLDLEAAFEKVKHKLQQKMEEVQLEQS 269 (275)
Q Consensus 243 l~~~~~~l~~~~~~l~~~~~~~~~~~~ 269 (275)
|++|+++|++++++|.+...+.+|+|.
T Consensus 288 l~~~~~~l~~~~~~l~~~~~~~~~~~~ 314 (667)
T PLN02712 288 LERLDLAFEALRKQLFGRLHGVVRKQL 314 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998874
No 11
>PLN02712 arogenate dehydrogenase
Probab=100.00 E-value=4.2e-41 Score=321.55 Aligned_cols=258 Identities=55% Similarity=0.903 Sum_probs=220.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC-
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL- 87 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l- 87 (275)
...|||+|||+|+||+++|++|++.|++|++|||+.....+.+.|+....++++++...+|+||+|||+..+.++++++
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l~ 446 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLP 446 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHHH
Confidence 4668999999999999999999999999999999975455666788777788775323589999999999999999988
Q ss_pred C-CCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeee----ecCChHHHHHHHHH
Q 023897 88 P-VHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKV----RIRDEATCSSFLRI 162 (275)
Q Consensus 88 ~-~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l 162 (275)
. . ++++++++|++|+|..+.+.+.+.++.+..|++.|||+|++.+..++.+.+.++.+. +....+.++++.++
T Consensus 447 ~~~--lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l 524 (667)
T PLN02712 447 FQR--LKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDI 524 (667)
T ss_pred Hhc--CCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHHHHH
Confidence 4 4 788999999999999888999988887788999999999997533444444333321 11133455677899
Q ss_pred HHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcccccCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHHHH
Q 023897 163 FESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQE 242 (275)
Q Consensus 163 ~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~~~~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~~~ 242 (275)
|+.+|++++.+++++||+++|.+||+||+++.+|.+.+.+..++++++|++++.|..+..+++|+||++|+..|+++.+.
T Consensus 525 ~~~lGa~vv~ms~eeHD~~~A~vShLpHlla~~L~~~~~~~~~~~~~gfr~l~~Li~Ria~~~p~l~~dI~~~N~~a~~~ 604 (667)
T PLN02712 525 FAREGCRMVEMSCAEHDWHAAGSQFITHTMGRLLEKLGLESTPINTKGYETLLNLVENTAGDSFDLYYGLFMYNVNAMEQ 604 (667)
T ss_pred HHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccccHHHHHHHHHHHhhcCCCHHHHHHHHHHChHHHHH
Confidence 99999999999999999999999999999999999988766778999999999888888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHhhc
Q 023897 243 LLDLEAAFEKVKHKLQQKMEEVQLEQ 268 (275)
Q Consensus 243 l~~~~~~l~~~~~~l~~~~~~~~~~~ 268 (275)
|++|...|+++++.|.+....++|+|
T Consensus 605 l~~f~~~l~~~~~~l~~~~~~~~~~~ 630 (667)
T PLN02712 605 LERLDLAFESLKKQLFGRLHGVLRKQ 630 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987776
No 12
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-40 Score=300.77 Aligned_cols=235 Identities=22% Similarity=0.294 Sum_probs=201.1
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
.+..++|+||| +|.||+++|..|+++|++|++||+++. ++.+++ +.++|+||+|+|+..+.+++.+
T Consensus 95 ~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~------------~~~~~~-~~~aDlVilavP~~~~~~~~~~ 161 (374)
T PRK11199 95 NPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW------------DRAEDI-LADAGMVIVSVPIHLTEEVIAR 161 (374)
T ss_pred CcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc------------hhHHHH-HhcCCEEEEeCcHHHHHHHHHH
Confidence 34668999999 999999999999999999999998742 234554 4799999999999999999999
Q ss_pred CCCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHc
Q 023897 87 LPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESE 166 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (275)
+.. ++++++++|++|+|..+.+.+.+.++ .+|++.|||+|++.. ++.+..+++++ +++++.++++.++++.+
T Consensus 162 l~~--l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~--~~~~~~vv~~~--~~~~~~~~~~~~l~~~l 233 (374)
T PRK11199 162 LPP--LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVG--SLAKQVVVVCD--GRQPEAYQWLLEQIQVW 233 (374)
T ss_pred HhC--CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCc--ccCCCEEEEcC--CCCchHHHHHHHHHHHC
Confidence 832 68899999999999988888877654 369999999999864 45666566654 33567789999999999
Q ss_pred CCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhc----cccc---CcccCcchHH----HHHHhhcCCCCChhhHHHHHHH
Q 023897 167 GCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSEL----EIQS---TSMNTKGFET----LIRLKESSVNDSFDLFSGLYIH 235 (275)
Q Consensus 167 G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~----~~~~---~~l~~~~~~~----~~rl~~~~~~~~p~~~~~i~~~ 235 (275)
|++++++++++||+++|++||+||+++.+++.. +.+. ..+.+++|++ ++|++.++ |+||.+|+..
T Consensus 234 G~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~~~~~~~~fr~~la~~tRia~~~----p~lw~dI~~~ 309 (374)
T PRK11199 234 GARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQLLALSSPIYRLELAMVGRLFAQD----PQLYADIIMS 309 (374)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcChHHHHHHHHHHHHHcCC----HHHHHHHHHh
Confidence 999999999999999999999999998877642 3331 3588999999 89999776 9999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897 236 NRFAKQELLDLEAAFEKVKHKLQQKMEEVQLE 267 (275)
Q Consensus 236 N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 267 (275)
|+++++.+++|++.|+++++.|+++|.+.|.+
T Consensus 310 N~~~~~~l~~~~~~l~~l~~~l~~~d~~~l~~ 341 (374)
T PRK11199 310 SPENLALIKRYYQRFGEALELLEQGDKQAFID 341 (374)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999998765
No 13
>PRK06444 prephenate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-38 Score=259.78 Aligned_cols=194 Identities=22% Similarity=0.374 Sum_probs=164.5
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCCCC
Q 023897 12 LKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPVH 90 (275)
Q Consensus 12 ~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~~~ 90 (275)
|||+|||. |.||++++..|.+.|+.|+ + .++|+||+|+|+..+.++++++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------~-~~~DlVilavPv~~~~~~i~~~~-- 52 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------I-KKADHAFLSVPIDAALNYIESYD-- 52 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------E-CCCCEEEEeCCHHHHHHHHHHhC--
Confidence 69999996 9999999999999999884 1 57999999999999999998871
Q ss_pred CCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeE
Q 023897 91 CLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKM 170 (275)
Q Consensus 91 ~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v 170 (275)
.+++|++|+|.++.+. ..+|+++||||||+.+..++. ..++++. +..+++..++++++|+ |+++
T Consensus 53 -----~~v~Dv~SvK~~i~~~-------~~~~vg~HPMfGp~~a~~~lf-~~~iv~~-~~~~~~~~~~~~~l~~--G~~~ 116 (197)
T PRK06444 53 -----NNFVEISSVKWPFKKY-------SGKIVSIHPLFGPMSYNDGVH-RTVIFIN-DISRDNYLNEINEMFR--GYHF 116 (197)
T ss_pred -----CeEEeccccCHHHHHh-------cCCEEecCCCCCCCcCccccc-ceEEEEC-CCCCHHHHHHHHHHHc--CCEE
Confidence 2799999999975432 247999999999987643332 3444442 3346677889999998 8999
Q ss_pred EEcChhHHHHHHHHhhhhHHHHHHHHhhcccccCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHHHHHHHHHHHH
Q 023897 171 LEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAAF 250 (275)
Q Consensus 171 ~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~~~~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~~~l~~~~~~l 250 (275)
+.+++++||+++|++|||||+++.++.+. . ..+++++||+++|+++...+++|+||.+|+.+||++ +.+++|.+.+
T Consensus 117 ~~~t~eeHD~~~A~ishLpH~ia~al~~~--~-~~~~t~~fr~l~ria~~~~~~~p~lw~dI~~~N~~a-~~~~~~~~~~ 192 (197)
T PRK06444 117 VEMTADEHDLLMSEIMVKPYIISMILKDI--K-SDIKTGSFDKLLEVSEIKEKENWEVFNDTIIYNPYT-NVINDLIERL 192 (197)
T ss_pred EEeCHHHHHHHHHHHHHHHHHHHHHHccC--C-CCCCCccHHHHHHHHHHhccCCHHHHHHHHHHCchH-HHHHHHHHHH
Confidence 99999999999999999999999999884 2 478999999999999888888999999999999999 9999999987
Q ss_pred HHH
Q 023897 251 EKV 253 (275)
Q Consensus 251 ~~~ 253 (275)
+++
T Consensus 193 ~~~ 195 (197)
T PRK06444 193 NKV 195 (197)
T ss_pred hhc
Confidence 664
No 14
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=3.9e-36 Score=293.94 Aligned_cols=250 Identities=21% Similarity=0.333 Sum_probs=212.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChh-hhHHHHcCce--EecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDH-SQLCHRSGIS--FFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~-~~~a~~~g~~--~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
..||+|||+|+||+++++.|.+.| ++|++||++++ .+.+.+.|+. ..++.+++ ++++|+||+|+|++.+.++++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~-~~~aDvVilavp~~~~~~vl~ 81 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEA-VSGADVIVLAVPVLAMEKVLA 81 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHH-hcCCCEEEECCCHHHHHHHHH
Confidence 478999999999999999999998 48999999985 4556667763 34566665 489999999999999999999
Q ss_pred cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC-CCceeecCCCCCCCCCc------CCccccceeeeeeecCChHHHH
Q 023897 86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE-EMDVLCTHPMFGPESGQ------NGWKDFAFVYEKVRIRDEATCS 157 (275)
Q Consensus 86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~-~~~~v~~hP~~g~~~~~------~~~~g~~~~~~~~~~~~~~~~~ 157 (275)
++ +. ++++++++|++|+|..+.+.+++.++. ..+|++.|||+|++..+ +.+.+..+++++....+++..+
T Consensus 82 ~l~~~--~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 159 (735)
T PRK14806 82 DLKPL--LSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALA 159 (735)
T ss_pred HHHHh--cCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHH
Confidence 99 76 788899999999999888888887653 46899999999998532 3456777888876555777889
Q ss_pred HHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhc----ccc--cCcccCcchHHHHHHhhcCCCCChhhHHH
Q 023897 158 SFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSEL----EIQ--STSMNTKGFETLIRLKESSVNDSFDLFSG 231 (275)
Q Consensus 158 ~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~----~~~--~~~l~~~~~~~~~rl~~~~~~~~p~~~~~ 231 (275)
.++++|+.+|.+++++++++||+++|++||+||++++++++. +.. ...+++++|+|++|++.++ |++|.+
T Consensus 160 ~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~~~~~~~a~~~f~~~tRia~~~----p~~~~d 235 (735)
T PRK14806 160 RVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLANREDNLDIFRYAAGGFRDFTRIAASD----PVMWHD 235 (735)
T ss_pred HHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHhhcCChhHHHhhhccchhcccccccCC----HHHHHH
Confidence 999999999999999999999999999999999888777653 222 2478999999999999665 999999
Q ss_pred HHHHCHHHH-HHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897 232 LYIHNRFAK-QELLDLEAAFEKVKHKLQQKMEEVQLE 267 (275)
Q Consensus 232 i~~~N~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~ 267 (275)
|+..|+.+. +.|++|+++|++++++++++|.+.|++
T Consensus 236 i~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~~~ 272 (735)
T PRK14806 236 IFLANKEAVLRALDHFRDDLDALRAAIEAGDGHALLG 272 (735)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999886 999999999999999999999888665
No 15
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=100.00 E-value=7.3e-35 Score=281.06 Aligned_cols=191 Identities=20% Similarity=0.257 Sum_probs=171.9
Q ss_pred EEEecCchhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC-CceeecCCCCCCCCCc------CCccccc
Q 023897 71 ILISTSILSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE-MDVLCTHPMFGPESGQ------NGWKDFA 142 (275)
Q Consensus 71 iilavp~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~-~~~v~~hP~~g~~~~~------~~~~g~~ 142 (275)
||+|+|+..+.+++.++ ++ ++++++|+|++|+|..+++.+.+.++.. .+||++|||+|++.++ +.|+|.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~--~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPF--LDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhh--CCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 69999999999999999 88 8999999999999999999988887643 5799999999999764 3588999
Q ss_pred eeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcc--c-c-c--CcccCcchHHHHH
Q 023897 143 FVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELE--I-Q-S--TSMNTKGFETLIR 216 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~--~-~-~--~~l~~~~~~~~~r 216 (275)
+++|+....+++.+++++++++.+|++++.+++++||+++|++|||||+++.+|++.. . + . ..|+++||||+||
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~~~~~~~~~~~~~a~~gfrd~tR 158 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQILGESDAELKFSYAAGGFRDFTR 158 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHHhhccChhHHHHhcccchhcccc
Confidence 9999877667888999999999999999999999999999999999999999998742 1 1 1 3699999999999
Q ss_pred HhhcCCCCChhhHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897 217 LKESSVNDSFDLFSGLYIHNRFAK-QELLDLEAAFEKVKHKLQQKMEEVQLE 267 (275)
Q Consensus 217 l~~~~~~~~p~~~~~i~~~N~~~~-~~l~~~~~~l~~~~~~l~~~~~~~~~~ 267 (275)
++.++ |+||.+|+.+|++++ +.|++|+++|+++++.|+++|.+.|.+
T Consensus 159 ia~~~----p~lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~ 206 (673)
T PRK11861 159 IAASS----PEMWRDVCLANRAALLDELDAYTAVLARLRAAIDAGDGAALEA 206 (673)
T ss_pred cccCC----HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99887 999999999999996 999999999999999999999887654
No 16
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-33 Score=238.07 Aligned_cols=261 Identities=46% Similarity=0.741 Sum_probs=233.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCCCC
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPVH 90 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~~~ 90 (275)
..+|||||.|+||..+|..|.++||.|..++|++....+...|...++.+.+.+....|+|++||....+..++..++.+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsiekilatypfq 131 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILATYPFQ 131 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHHHhcCch
Confidence 35799999999999999999999999999999985566777888777777776567899999999999999999999444
Q ss_pred CCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCC----hHHHHHHHHHHHHc
Q 023897 91 CLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRD----EATCSSFLRIFESE 166 (275)
Q Consensus 91 ~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~~ 166 (275)
+++.|++++|+.|+|....+.+.+++|++..++++|||+||......++|.|.++...+... ++..+.+.++|...
T Consensus 132 rlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~ce 211 (480)
T KOG2380|consen 132 RLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACE 211 (480)
T ss_pred hhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhc
Confidence 57889999999999999999999999999999999999999977778899999998776533 67889999999999
Q ss_pred CCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcccccCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHHHHHHHH
Q 023897 167 GCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDL 246 (275)
Q Consensus 167 G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~~~~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~~~l~~~ 246 (275)
|++.++++.++||++.|-+|.++|.....|..+.....+..++|++.++.|+.+.+++++++|++++..||++.+.|+++
T Consensus 212 gckmVemS~eeHDkiaAdsQfVTHtagr~lg~aw~~syPintkGyEnlldLseniysdsfhlyyGLfiyNpnAleqlery 291 (480)
T KOG2380|consen 212 GCKMVEMSYEEHDKIAADSQFVTHTAGRSLGSAWAKSYPINTKGYENLLDLSENIYSDSFHLYYGLFIYNPNALEQLERY 291 (480)
T ss_pred CCeEEEEEeecccccccchhHHHHHHHHHHHHhhhhhCceecccHHHHHHHHHHhhcchhhheeeeeeeChhHHHHHHHH
Confidence 99999999999999999999999999888877665556677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhHHHhhcCCC
Q 023897 247 EAAFEKVKHKLQQKMEEVQLEQSPN 271 (275)
Q Consensus 247 ~~~l~~~~~~l~~~~~~~~~~~~~~ 271 (275)
.-+.+.++..+-.....++|.|+=+
T Consensus 292 d~afeelfkelfsrlhqeyrkq~f~ 316 (480)
T KOG2380|consen 292 DTAFEELFKELFSRLHQEYRKQLFK 316 (480)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 9999999999998888888888643
No 17
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.94 E-value=1.9e-25 Score=193.51 Aligned_cols=243 Identities=12% Similarity=0.131 Sum_probs=190.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCC----eEEEEcCChh-hhHHH-HcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGH----ILRATSRTDH-SQLCH-RSGISFFSDKRAFLEADNDVILISTSILSLSEVL 84 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~----~V~~~dr~~~-~~~a~-~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~ 84 (275)
.+||+|||+|+||++|+..|.++|+ +|++|+|+++ .+.+. +.|+....+++++ +.++|+||+||||+.+.+++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~-~~~aDiIiLavkP~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEV-ANSADILILSIKPDLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHH-HhhCCEEEEEeChHHHHHHH
Confidence 3689999999999999999999884 6999999985 34333 4788777777775 48999999999999999999
Q ss_pred hcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897 85 NSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF 163 (275)
Q Consensus 85 ~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 163 (275)
+++ +. ++++++++|+..- ...+.++++++...++++.+|+.+...+ .|...+ +.....+++..+.++++|
T Consensus 81 ~~l~~~--~~~~~lvISi~AG--i~i~~l~~~l~~~~~vvR~MPN~~~~vg----~g~t~~-~~~~~~~~~~~~~v~~lf 151 (272)
T PRK12491 81 NQIKDQ--IKNDVIVVTIAAG--KSIKSTENEFDRKLKVIRVMPNTPVLVG----EGMSAL-CFNEMVTEKDIKEVLNIF 151 (272)
T ss_pred HHHHHh--hcCCcEEEEeCCC--CcHHHHHHhcCCCCcEEEECCChHHHHc----CceEEE-EeCCCCCHHHHHHHHHHH
Confidence 999 76 7788899887653 2357788888765689999998877765 454333 333344677789999999
Q ss_pred HHcCCeEEEcChhHHHHHHHHhhhhHHHHHH---HHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhHHHHH
Q 023897 164 ESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR---VLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGLY 233 (275)
Q Consensus 164 ~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~---~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~ 233 (275)
+.+|. ++++++++.|.+++++++.|.++++ +|.+ .|++. ..++...|.+..++.... +.+|+.+.+-+
T Consensus 152 ~~~G~-~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~-~~~p~~l~~~V 229 (272)
T PRK12491 152 NIFGQ-TEVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQAVLGSAKMVLET-GIHPGELKDMV 229 (272)
T ss_pred HcCCC-EEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHhC
Confidence 99995 5777899999999999999987654 4444 35553 468888999999998765 66777666655
Q ss_pred H-HCHHHHHHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897 234 I-HNRFAKQELLDLEAAFEKVKHKLQQKMEEVQLE 267 (275)
Q Consensus 234 ~-~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 267 (275)
. .+..+.+.|+.|++ ..+++.+.++..++.++
T Consensus 230 ~sPGGtT~~gl~~le~--~~~~~~~~~av~aa~~r 262 (272)
T PRK12491 230 CSPGGTTIEAVATLEE--KGLRTAIISAMKRCTQK 262 (272)
T ss_pred CCCchHHHHHHHHHHH--CChHHHHHHHHHHHHHH
Confidence 4 56677899999998 68898888888877654
No 18
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.93 E-value=1.5e-24 Score=184.79 Aligned_cols=241 Identities=18% Similarity=0.221 Sum_probs=190.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCC----CeEEEEcCChh-h-hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQG----HILRATSRTDH-S-QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL 84 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g----~~V~~~dr~~~-~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~ 84 (275)
+|||+|||+|+||.+|+..|.++| .+|++.+|+++ . ..+.++|+..+++.+++ +.++|+||+||+|+.+.+++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~-~~~advv~LavKPq~~~~vl 79 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEA-VEEADVVFLAVKPQDLEEVL 79 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHH-HhhCCEEEEEeChHhHHHHH
Confidence 479999999999999999999999 58999999985 3 36677787756676675 58899999999999999999
Q ss_pred hcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897 85 NSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF 163 (275)
Q Consensus 85 ~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 163 (275)
.++ + ..++++++++..- ..++.++++++ +.++++.+|+.....+ +|...++ .....+++..+.+.++|
T Consensus 80 ~~l~~---~~~~~lvISiaAG--v~~~~l~~~l~-~~~vvR~MPNt~a~vg----~g~t~i~-~~~~~~~~~~~~v~~l~ 148 (266)
T COG0345 80 SKLKP---LTKDKLVISIAAG--VSIETLERLLG-GLRVVRVMPNTPALVG----AGVTAIS-ANANVSEEDKAFVEALL 148 (266)
T ss_pred HHhhc---ccCCCEEEEEeCC--CCHHHHHHHcC-CCceEEeCCChHHHHc----Ccceeee-cCccCCHHHHHHHHHHH
Confidence 999 5 4567777776532 23577888888 7899999998877754 4554443 33334778888999999
Q ss_pred HHcCCeEEEcChhHHHHHHHHhhhhHHHHH---HHHhhc----cccc---CcccCcchHHHHHHhhcCCCCChhhHHHH-
Q 023897 164 ESEGCKMLEMSCEEHDKVAAKSQFLTHTIG---RVLSEL----EIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGL- 232 (275)
Q Consensus 164 ~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a---~~l~~~----~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i- 232 (275)
+.+| ++++++++..|.+++++++.|.+++ .+|.+. |++. ..++.+.|....++.... +.+|..+++-
T Consensus 149 ~~~G-~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t~~Gaakll~e~-~~~p~~Lr~~V 226 (266)
T COG0345 149 SAVG-KVVEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQTVAGAAKLLLES-GEHPAELRDQV 226 (266)
T ss_pred HhcC-CeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHhC
Confidence 9999 5677779999999999999998765 455553 5443 468899999999999987 6678555554
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897 233 YIHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQLE 267 (275)
Q Consensus 233 ~~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 267 (275)
+..+..+.+.|..|++ +.++..+.+..+++.++
T Consensus 227 tSPGGtTiagl~~le~--~g~~~~v~~av~aa~~r 259 (266)
T COG0345 227 TSPGGTTIAGLRVLEE--DGFRGAVIEAVEAAYKR 259 (266)
T ss_pred cCCCchHHHHHHHHHH--hChHHHHHHHHHHHHHH
Confidence 4456677899999997 58999999988888654
No 19
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.93 E-value=3.9e-24 Score=185.34 Aligned_cols=239 Identities=14% Similarity=0.155 Sum_probs=180.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCC----eEEEE-cCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGH----ILRAT-SRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~----~V~~~-dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
|||+|||+|+||++|++.|.++|+ +|++| +|+++ .+.+.+.|+....++.++ ++++|+||+|+|++.+.+++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~-~~~aDvVil~v~~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEV-VKSSDVIILAVKPQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHH-HhcCCEEEEEECcHHHHHHHH
Confidence 789999999999999999999998 89998 99885 345566788888888885 489999999999999999999
Q ss_pred cC-CCCCCCCCcEEEeC-CCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897 86 SL-PVHCLQRRTLIADV-LSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF 163 (275)
Q Consensus 86 ~l-~~~~l~~~~iv~d~-~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 163 (275)
.+ +. +.++++++++ ++++. +.+++.++.. ++++.+|+.+...+ .+ ...++.....+++..+.++++|
T Consensus 80 ~l~~~--~~~~~~iIs~~~g~~~---~~l~~~~~~~-~vvr~mP~~~~~~~----~~-~~~l~~~~~~~~~~~~~v~~l~ 148 (266)
T PLN02688 80 ELRPL--LSKDKLLVSVAAGITL---ADLQEWAGGR-RVVRVMPNTPCLVG----EA-ASVMSLGPAATADDRDLVATLF 148 (266)
T ss_pred HHHhh--cCCCCEEEEecCCCcH---HHHHHHcCCC-CEEEECCCcHHHHh----Cc-eEEEEeCCCCCHHHHHHHHHHH
Confidence 88 66 7778876655 55543 4555555433 67888887766543 22 2334433334678889999999
Q ss_pred HHcCCeEEEcChhHHHHHHHHhhhhHHHHHH---HHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhH-HHH
Q 023897 164 ESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR---VLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLF-SGL 232 (275)
Q Consensus 164 ~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~---~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~-~~i 232 (275)
+.+|. ++++++++||.+++.+++.|.+++. ++++ .|++. ..+...++....++.... +.+|..+ ..+
T Consensus 149 ~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~-~~~~~~l~~~v 226 (266)
T PLN02688 149 GAVGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTVLGAAKMVLET-GKHPGQLKDMV 226 (266)
T ss_pred HhCCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHhC
Confidence 99998 9999999999999999998876543 3333 46653 356777888888877654 6677776 555
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHhcchhHHHh
Q 023897 233 YIHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQL 266 (275)
Q Consensus 233 ~~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 266 (275)
...+..+.+.++.|.+ ..+++.+.++..+...
T Consensus 227 ~spgG~t~~~l~~l~~--~g~~~~~~~a~~~~~~ 258 (266)
T PLN02688 227 TSPGGTTIAGVHELEK--GGFRAALMNAVVAAAK 258 (266)
T ss_pred CCCchHHHHHHHHHHH--CChHHHHHHHHHHHHH
Confidence 5677777888988887 4777777777666643
No 20
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.93 E-value=5.1e-24 Score=184.71 Aligned_cols=241 Identities=14% Similarity=0.143 Sum_probs=181.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCC---CeEEEEcCChh-hhHHH-HcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQG---HILRATSRTDH-SQLCH-RSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g---~~V~~~dr~~~-~~~a~-~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
+|+|+|||+|.||++++..|.+.| ++|.+|+|+++ .+... ..|+....+.++. +.++|+||+|||++.+.++++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~-~~~advVil~v~~~~~~~v~~ 80 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEA-AQEADVVVLAVKPQVMEEVLS 80 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHH-HhcCCEEEEEcCHHHHHHHHH
Confidence 579999999999999999999998 78999999985 33333 3477777777775 489999999999999999999
Q ss_pred cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897 86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE 164 (275)
Q Consensus 86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 164 (275)
.+ +. + +..++.++++++. +.+++.++.+.++++.||+.+...+ .+. ..+++....+++..+.++++|+
T Consensus 81 ~l~~~--~-~~~vvs~~~gi~~---~~l~~~~~~~~~iv~~~P~~p~~~~----~~~-~~i~~~~~~~~~~~~~v~~l~~ 149 (267)
T PRK11880 81 ELKGQ--L-DKLVVSIAAGVTL---ARLERLLGADLPVVRAMPNTPALVG----AGM-TALTANALVSAEDRELVENLLS 149 (267)
T ss_pred HHHhh--c-CCEEEEecCCCCH---HHHHHhcCCCCcEEEecCCchHHHc----Cce-EEEecCCCCCHHHHHHHHHHHH
Confidence 99 65 5 3455566666653 4566777656788999997654432 232 3444443347888899999999
Q ss_pred HcCCeEEEcChhHHHHHHHHhhhhHHHHH---HHHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhH-HHHH
Q 023897 165 SEGCKMLEMSCEEHDKVAAKSQFLTHTIG---RVLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLF-SGLY 233 (275)
Q Consensus 165 ~~G~~v~~~~~~~hD~~~a~~~~lp~~~a---~~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~-~~i~ 233 (275)
.+|..+++.++++||.++++++++|+++. .++.+ .|++. ..+..+.|++..++.... +.+|+.+ ..+.
T Consensus 150 ~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~-~~~~~~l~~~v~ 228 (267)
T PRK11880 150 AFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLLES-GEHPAELRDNVT 228 (267)
T ss_pred hCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHhCC
Confidence 99986666669999999999999997663 23333 45543 457888999999999765 6678777 5555
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHhcchhHHHh
Q 023897 234 IHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQL 266 (275)
Q Consensus 234 ~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 266 (275)
..+..+.+.++.+.+ ..+++.+.+.......
T Consensus 229 tpgG~t~~gl~~l~~--~g~~~~~~~a~~~~~~ 259 (267)
T PRK11880 229 SPGGTTIAALRVLEE--KGLRAAVIEAVQAAAK 259 (267)
T ss_pred CCcHHHHHHHHHHHH--CCHHHHHHHHHHHHHH
Confidence 667777788888877 4777777776666544
No 21
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.92 E-value=1.2e-23 Score=183.40 Aligned_cols=242 Identities=12% Similarity=0.181 Sum_probs=182.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCC----CeEEEEcCCh-hh-h-HHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQG----HILRATSRTD-HS-Q-LCHRSGISFFSDKRAFLEADNDVILISTSILSLSE 82 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g----~~V~~~dr~~-~~-~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~ 82 (275)
..|||+|||+|+||++|++.|.++| ++|++|+|++ +. + .+.+.|+..+.++.++ ++++|+||+|||++.+.+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~-~~~aDvVilav~p~~~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKEL-LTDANILFLAMKPKDVAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHH-HhcCCEEEEEeCHHHHHH
Confidence 4579999999999999999999998 7899999976 33 2 3344588777888775 489999999999999999
Q ss_pred HhhcC-CCCCCCCCcEEEeC-CCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHH
Q 023897 83 VLNSL-PVHCLQRRTLIADV-LSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFL 160 (275)
Q Consensus 83 v~~~l-~~~~l~~~~iv~d~-~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (275)
++..+ +. +.++++++++ ++++. +.+++.++.+..+++.||+.....+ .+. .++++....+++..+.++
T Consensus 81 vl~~l~~~--~~~~~liIs~~aGi~~---~~l~~~~~~~~~v~r~mPn~~~~~~----~~~-t~~~~~~~~~~~~~~~v~ 150 (279)
T PRK07679 81 ALIPFKEY--IHNNQLIISLLAGVST---HSIRNLLQKDVPIIRAMPNTSAAIL----KSA-TAISPSKHATAEHIQTAK 150 (279)
T ss_pred HHHHHHhh--cCCCCEEEEECCCCCH---HHHHHHcCCCCeEEEECCCHHHHHh----ccc-EEEeeCCCCCHHHHHHHH
Confidence 99998 66 7788899996 66654 4555666655689999998665543 233 455444334577889999
Q ss_pred HHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHH---HHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhHH
Q 023897 161 RIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR---VLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLFS 230 (275)
Q Consensus 161 ~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~---~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~ 230 (275)
++|+.+|. +++++++..|.+++.+++.|.+++. ++.+ .|++. ..+...++.+..++.... +.+|..+.
T Consensus 151 ~l~~~~G~-~~~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~-~~~~~~l~ 228 (279)
T PRK07679 151 ALFETIGL-VSVVEEEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKAS-EKHPSILR 228 (279)
T ss_pred HHHHhCCc-EEEeCHHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHH
Confidence 99999996 5677888888889999999976543 4443 45553 457778888887887654 55688887
Q ss_pred HHH-HHCHHHHHHHHHHHHHHHHHHHHHhcchhHHHh
Q 023897 231 GLY-IHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQL 266 (275)
Q Consensus 231 ~i~-~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 266 (275)
+-+ ..+......|+.|.+ ..+++.+.++.+++.+
T Consensus 229 ~~v~spgg~t~~gl~~l~~--~~~~~~i~~a~~~a~~ 263 (279)
T PRK07679 229 KEITSPGGTTEAGIEVLQE--HRFQQALISCITQATQ 263 (279)
T ss_pred HhcCCCchHHHHHHHHHHH--CChHHHHHHHHHHHHH
Confidence 776 556666788888876 4688888777776644
No 22
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.91 E-value=5.7e-23 Score=177.35 Aligned_cols=238 Identities=15% Similarity=0.197 Sum_probs=177.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC----eEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH----ILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~----~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
..|||+|||+|+||++++..|.+++. +|++++|++.. .+.....++.++ ++++|+||+|+|++.+.+++.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~-~~~~D~Vilavkp~~~~~vl~ 75 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEEL-AKTCDIIVLAVKPDLAGKVLL 75 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHH-HHhCCEEEEEeCHHHHHHHHH
Confidence 45899999999999999999999872 59999987642 234455677775 478999999999999999999
Q ss_pred cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897 86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE 164 (275)
Q Consensus 86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 164 (275)
++ +. ++++.+|+++++++.. .+++.++....+++.+|+.+...+ .+ .+++++....+++..+.++++|+
T Consensus 76 ~i~~~--l~~~~iIS~~aGi~~~---~l~~~~~~~~~vvr~mPn~p~~~g----~g-~t~i~~~~~~~~~~~~~v~~l~~ 145 (260)
T PTZ00431 76 EIKPY--LGSKLLISICGGLNLK---TLEEMVGVEAKIVRVMPNTPSLVG----QG-SLVFCANNNVDSTDKKKVIDIFS 145 (260)
T ss_pred HHHhh--ccCCEEEEEeCCccHH---HHHHHcCCCCeEEEECCCchhHhc----ce-eEEEEeCCCCCHHHHHHHHHHHH
Confidence 99 76 7777888999998754 455555543334444444333332 23 35555544446677899999999
Q ss_pred HcCCeEEEcChhHHHHHHHHhhhhHHHHHH---HHhh----ccccc---CcccCcchHHHHHHhhcCCCCCh-hhHHHHH
Q 023897 165 SEGCKMLEMSCEEHDKVAAKSQFLTHTIGR---VLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSF-DLFSGLY 233 (275)
Q Consensus 165 ~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~---~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p-~~~~~i~ 233 (275)
.+|. ++.+++++.|.+++++++.|.+++. ++.+ .|++. ..++...+....++.... +.+| ++-..+.
T Consensus 146 ~~G~-~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~-~~~~~~l~~~v~ 223 (260)
T PTZ00431 146 ACGI-IQEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTILGSVHMVKAS-DQPVQQLKDDVC 223 (260)
T ss_pred hCCc-EEEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHhCC
Confidence 9995 5566888999999999999987654 4444 35553 468889999999998875 6677 4445555
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897 234 IHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQLE 267 (275)
Q Consensus 234 ~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 267 (275)
..+..+.+.++.|++ ..+++.+.++..++.++
T Consensus 224 spgG~T~~gl~~le~--~g~~~~~~~a~~aa~~r 255 (260)
T PTZ00431 224 SPGGITIVGLYTLEK--HAFKYTVMDAVESACQK 255 (260)
T ss_pred CCChHHHHHHHHHHH--CChHHHHHHHHHHHHHH
Confidence 577788899999987 58999998888877654
No 23
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.89 E-value=3.8e-22 Score=173.65 Aligned_cols=238 Identities=13% Similarity=0.173 Sum_probs=178.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCC----CeEEEEcCCh-hh-hH-HHHc-CceEecChHHHhccCCCEEEEecCchhHHH
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQG----HILRATSRTD-HS-QL-CHRS-GISFFSDKRAFLEADNDVILISTSILSLSE 82 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g----~~V~~~dr~~-~~-~~-a~~~-g~~~~~~~~~~~~~~aD~iilavp~~~~~~ 82 (275)
|+||+|||+|+||++++..|.++| ++|++|+|++ .. .. .... +...+.+..++ +.++|+||+|+|++.+.+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~-~~~aDvVilavpp~~~~~ 79 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEI-FTKCDHSFICVPPLAVLP 79 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHH-HhhCCEEEEecCHHHHHH
Confidence 368999999999999999999998 6899999875 32 22 2223 34556677775 489999999999999999
Q ss_pred HhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHH
Q 023897 83 VLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLR 161 (275)
Q Consensus 83 v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 161 (275)
++.++ +. +.++++++++.. +...+.+++.++. .++++.+|+.+...+ +|.. .++.....+++..+.+++
T Consensus 80 vl~~l~~~--l~~~~~ivS~~a--Gi~~~~l~~~~~~-~~vvR~MPN~~~~~g----~g~t-~~~~~~~~~~~~~~~v~~ 149 (277)
T PRK06928 80 LLKDCAPV--LTPDRHVVSIAA--GVSLDDLLEITPG-LQVSRLIPSLTSAVG----VGTS-LVAHAETVNEANKSRLEE 149 (277)
T ss_pred HHHHHHhh--cCCCCEEEEECC--CCCHHHHHHHcCC-CCEEEEeCccHHHHh----hhcE-EEecCCCCCHHHHHHHHH
Confidence 99999 76 777777776543 2334677787763 579999998877754 4543 334333446778899999
Q ss_pred HHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHH---HHhh----c-cccc---CcccCcchHHHHHHhhcCCCCChhhHH
Q 023897 162 IFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR---VLSE----L-EIQS---TSMNTKGFETLIRLKESSVNDSFDLFS 230 (275)
Q Consensus 162 l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~---~l~~----~-~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~ 230 (275)
+|+.+| +++.+++++.|.+++++++.|.+++. +|.+ . |++. ..++...|.+..++.... +.+|..+.
T Consensus 150 l~~~~G-~~~~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~-~~~p~~l~ 227 (277)
T PRK06928 150 TLSHFS-HVMTIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVEE-DYTFSGTI 227 (277)
T ss_pred HHHhCC-CEEEEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHH
Confidence 999999 55677888999999999999987653 5554 3 4553 458889999999998765 66787776
Q ss_pred HHHH-HCHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 023897 231 GLYI-HNRFAKQELLDLEAAFEKVKHKLQQKMEEV 264 (275)
Q Consensus 231 ~i~~-~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 264 (275)
+-+. .+..+++.|+.|++ .+++.+.+..+++
T Consensus 228 ~~v~spgGtT~~gl~~le~---~~~~~~~~~~~~a 259 (277)
T PRK06928 228 ERVATKGGITAEGAEVIQA---QLPQFFDELLDRT 259 (277)
T ss_pred HhCCCCChHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 6654 55677888888885 6777777766665
No 24
>PRK07680 late competence protein ComER; Validated
Probab=99.87 E-value=1.4e-20 Score=163.61 Aligned_cols=239 Identities=16% Similarity=0.204 Sum_probs=172.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCC----eEEEEcCChhh-h-HHHHc-CceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGH----ILRATSRTDHS-Q-LCHRS-GISFFSDKRAFLEADNDVILISTSILSLSEVL 84 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~----~V~~~dr~~~~-~-~a~~~-g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~ 84 (275)
|+|+|||+|+||++++..|.+.|+ +|.+|+|+++. . ...+. |+....+++++ +.++|+||+|||++.+.+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~-~~~aDiVilav~p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEV-ISQSDLIFICVKPLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHH-HHhCCEEEEecCHHHHHHHH
Confidence 589999999999999999999983 79999999853 2 22333 67777788775 48999999999999999999
Q ss_pred hcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897 85 NSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF 163 (275)
Q Consensus 85 ~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 163 (275)
+++ +. +.++++++++++.. ..+.+++.++ ...++.+|..... ...|...+..+ ...+++..+.++++|
T Consensus 80 ~~l~~~--l~~~~~iis~~ag~--~~~~L~~~~~--~~~~r~~p~~~~~----~~~G~t~~~~g-~~~~~~~~~~~~~ll 148 (273)
T PRK07680 80 QKLAPH--LTDEHCLVSITSPI--SVEQLETLVP--CQVARIIPSITNR----ALSGASLFTFG-SRCSEEDQQKLERLF 148 (273)
T ss_pred HHHHhh--cCCCCEEEEECCCC--CHHHHHHHcC--CCEEEECCChHHH----HhhccEEEeeC-CCCCHHHHHHHHHHH
Confidence 999 77 77888998887632 2466777765 2456667742211 11454333332 223566778999999
Q ss_pred HHcCCeEEEcChhHHHHHHHHhhhhHHHHHH---HHhh-----ccccc---CcccCcchHHHHHHhhcCCCCChhhHHHH
Q 023897 164 ESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR---VLSE-----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGL 232 (275)
Q Consensus 164 ~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~---~l~~-----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i 232 (275)
+.+| .+++++++..|..+++.++.|.+++. +|.+ .|++. ..+..+.+.+..++.... +.+|+.+.+-
T Consensus 149 ~~~G-~~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~-~~~~~~l~~~ 226 (273)
T PRK07680 149 SNIS-TPLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASEMLIGMGKLLEKG-LYTLPTLQEK 226 (273)
T ss_pred HcCC-CEEEEChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHh
Confidence 9999 56677877788888888888866543 3332 45553 457788899998988765 5566555554
Q ss_pred H-HHCHHHHHHHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897 233 Y-IHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQLE 267 (275)
Q Consensus 233 ~-~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 267 (275)
+ ..+..+.+.++.+++ .+++.+.+..+.+.++
T Consensus 227 v~spgG~T~~gl~~le~---~~~~~~~~~~~~~~~~ 259 (273)
T PRK07680 227 VCVKGGITGEGIKVLEE---EVGDMFHRLFQRTHEK 259 (273)
T ss_pred CCCCChhHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4 466677888888877 4888888877776544
No 25
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.86 E-value=4e-21 Score=166.74 Aligned_cols=209 Identities=21% Similarity=0.338 Sum_probs=160.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhh-HHHH--------------cCceEecChHHHhccCCCEEEEec
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQ-LCHR--------------SGISFFSDKRAFLEADNDVILIST 75 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~-~a~~--------------~g~~~~~~~~~~~~~~aD~iilav 75 (275)
++||+|||+|.||++||..|+++||+|.+|.|+++.. .-.+ .++..++|+.++ ++++|+|+++|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a-~~~ad~iv~av 79 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEA-LDGADIIVIAV 79 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHH-HhcCCEEEEEC
Confidence 4799999999999999999999999999999998532 1111 123567889986 58899999999
Q ss_pred CchhHHHHhhcC-CCCCCCCCcEEEeCC-----CCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeee
Q 023897 76 SILSLSEVLNSL-PVHCLQRRTLIADVL-----SVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVR 149 (275)
Q Consensus 76 p~~~~~~v~~~l-~~~~l~~~~iv~d~~-----s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~ 149 (275)
|.+.++++++++ ++ +.++.+++.++ .....+.+.+++.++... +. -++||+++.|..++.|+.++-.
T Consensus 80 Ps~~~r~v~~~l~~~--l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~--~~--vLSGPs~A~EVa~g~pta~~va- 152 (329)
T COG0240 80 PSQALREVLRQLKPL--LLKDAIIVSATKGLEPETGRLLSEIIEEELPDNP--IA--VLSGPSFAKEVAQGLPTAVVVA- 152 (329)
T ss_pred ChHHHHHHHHHHhhh--ccCCCeEEEEeccccCCCcchHHHHHHHHcCCCe--EE--EEECccHHHHHhcCCCcEEEEe-
Confidence 999999999999 77 88888888654 122234566677666332 11 2468888777888988877643
Q ss_pred cCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh-hhhHHHHHHHHh--h-ccc--cc-CcccCcchHHHHHHhhcCC
Q 023897 150 IRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS-QFLTHTIGRVLS--E-LEI--QS-TSMNTKGFETLIRLKESSV 222 (275)
Q Consensus 150 ~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~-~~lp~~~a~~l~--~-~~~--~~-~~l~~~~~~~~~rl~~~~~ 222 (275)
+.|.+..+.++++|..-.+++|..+ |.+...+ +.+++++|.+.. + +++ +. ..+.++||.+|+|++...
T Consensus 153 s~d~~~a~~v~~~f~~~~Frvy~~~----Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~l- 227 (329)
T COG0240 153 SNDQEAAEKVQALFSSPYFRVYTST----DVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVAL- 227 (329)
T ss_pred cCCHHHHHHHHHHhCCCcEEEEecC----chhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHh-
Confidence 4578889999999999999999987 8777755 699999886554 3 333 22 468999999999999987
Q ss_pred CCChhhHHHH
Q 023897 223 NDSFDLFSGL 232 (275)
Q Consensus 223 ~~~p~~~~~i 232 (275)
+..|+++..+
T Consensus 228 G~~~~T~~gL 237 (329)
T COG0240 228 GAKPETFMGL 237 (329)
T ss_pred CCCcchhccc
Confidence 7779877655
No 26
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.86 E-value=2.3e-20 Score=159.82 Aligned_cols=223 Identities=18% Similarity=0.184 Sum_probs=162.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCC----eEEEEcCC-hh-h-hHHHHcCceEecChHHHhccCCCEEEEecCchhHH
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGH----ILRATSRT-DH-S-QLCHRSGISFFSDKRAFLEADNDVILISTSILSLS 81 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~----~V~~~dr~-~~-~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~ 81 (275)
|+.+||+|||+|+||.+++..|.+.|+ +|++++|+ ++ . ..+.+.++..+.+++++ ++++|+||+|||++.+.
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DiViiavp~~~~~ 80 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQH-VTSVDTIVLAMPPSAHE 80 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHH-HhcCCEEEEecCHHHHH
Confidence 456899999999999999999998863 37788875 43 2 23444677777788886 48999999999999999
Q ss_pred HHhhcC-CCCCCCCCcEEEeC-CCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHH
Q 023897 82 EVLNSL-PVHCLQRRTLIADV-LSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSF 159 (275)
Q Consensus 82 ~v~~~l-~~~~l~~~~iv~d~-~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 159 (275)
++++++ +. ++ +++++++ ++++ .+.+++.++.+..++..||+++.+.+ .+.+.+.+... .+++..+.+
T Consensus 81 ~v~~~l~~~--~~-~~~vis~~~gi~---~~~l~~~~~~~~~v~r~~Pn~a~~v~----~g~~~~~~~~~-~~~~~~~~v 149 (245)
T PRK07634 81 ELLAELSPL--LS-NQLVVTVAAGIG---PSYLEERLPKGTPVAWIMPNTAAEIG----KSISLYTMGQS-VNETHKETL 149 (245)
T ss_pred HHHHHHHhh--cc-CCEEEEECCCCC---HHHHHHHcCCCCeEEEECCcHHHHHh----cCCeEEeeCCC-CCHHHHHHH
Confidence 999999 65 55 4455544 4444 35677777766678889998777654 56666655433 477888999
Q ss_pred HHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHH---HHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhH
Q 023897 160 LRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR---VLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLF 229 (275)
Q Consensus 160 ~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~---~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~ 229 (275)
+++|+.+|..++ +++++.|.+++++++.|.++.. ++.+ .|++. .++..+.+++..++... +.+|+.+
T Consensus 150 ~~lf~~~G~~~~-~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~--~~~~~~l 226 (245)
T PRK07634 150 QLILKGIGTSQL-CTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASMLEQ--TQDPANL 226 (245)
T ss_pred HHHHHhCCCEEE-ECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhC--CCCHHHH
Confidence 999999997764 6888899999999999976543 3433 45553 45778888888888864 4567665
Q ss_pred HHHHH-HCHHHHHHHHHH
Q 023897 230 SGLYI-HNRFAKQELLDL 246 (275)
Q Consensus 230 ~~i~~-~N~~~~~~l~~~ 246 (275)
.+-+. .+..+++.++.+
T Consensus 227 ~~~v~spgG~T~~gl~~l 244 (245)
T PRK07634 227 REQVTTPGGSTAEGLKAL 244 (245)
T ss_pred HHhCCCCChHHHHHHHHh
Confidence 55443 555666666554
No 27
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.85 E-value=2.2e-19 Score=154.52 Aligned_cols=169 Identities=19% Similarity=0.260 Sum_probs=139.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh---
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN--- 85 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~--- 85 (275)
+||+|||+|.||..||.+|.++||+|++|||+++ .+.+...|.....++.++ +..+|+||+|+|.+ .+++|+.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~ea-a~~aDvVitmv~~~~~V~~V~~g~~ 79 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEA-AAEADVVITMLPDDAAVRAVLFGEN 79 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHH-HHhCCEEEEecCCHHHHHHHHhCcc
Confidence 5899999999999999999999999999999985 356667799988899886 58999999999986 4678885
Q ss_pred cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897 86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF 163 (275)
Q Consensus 86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 163 (275)
.+ .. +++|++++|++|+.....+.+.+.+. .+..|+. -|+.|...+. ..|..+++++. +++.+++++++|
T Consensus 80 g~~~~--~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lD-APVsGg~~~A--~~GtLtimvGG---~~~~f~r~~pvl 151 (286)
T COG2084 80 GLLEG--LKPGAIVIDMSTISPETARELAAALAAKGLEFLD-APVSGGVPGA--AAGTLTIMVGG---DAEAFERAKPVL 151 (286)
T ss_pred chhhc--CCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEe-cCccCCchhh--hhCceEEEeCC---CHHHHHHHHHHH
Confidence 34 44 78999999999988877777766553 4567876 5888887542 36777888754 788999999999
Q ss_pred HHcCCeEEEcChhHHHHHHHHhhhhH
Q 023897 164 ESEGCKMLEMSCEEHDKVAAKSQFLT 189 (275)
Q Consensus 164 ~~~G~~v~~~~~~~hD~~~a~~~~lp 189 (275)
+.+|.+++++.+.-....+.+++++-
T Consensus 152 ~~~g~~i~~~G~~G~G~~~Kl~nn~l 177 (286)
T COG2084 152 EAMGKNIVHVGPVGAGQAAKLANNIL 177 (286)
T ss_pred HHhcCceEEECCCCchHHHHHHHHHH
Confidence 99999999999887777888776444
No 28
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.84 E-value=4.1e-21 Score=154.47 Aligned_cols=152 Identities=18% Similarity=0.279 Sum_probs=117.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCc-hhHHHHhhc--
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSI-LSLSEVLNS-- 86 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~-~~~~~v~~~-- 86 (275)
|+||||||+|.||+.||+.|.++||+|++|||+++ .+...+.|+....++.++ ++++|+||+|+|. +++.+++..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~-~~~~dvvi~~v~~~~~v~~v~~~~~ 79 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEA-AEQADVVILCVPDDDAVEAVLFGEN 79 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHH-HHHBSEEEE-SSSHHHHHHHHHCTT
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhH-hhcccceEeecccchhhhhhhhhhH
Confidence 58999999999999999999999999999999985 466677799999999996 5899999999998 567899988
Q ss_pred C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897 87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE 164 (275)
Q Consensus 87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 164 (275)
+ +. +++|++++|++++.....+.+.+.+ ..+.+|+. -|++|.... ...|...++..+ +++.+++++.+|+
T Consensus 80 i~~~--l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vd-apV~Gg~~~--a~~g~l~~~~gG---~~~~~~~~~~~l~ 151 (163)
T PF03446_consen 80 ILAG--LRPGKIIIDMSTISPETSRELAERLAAKGVRYVD-APVSGGPPG--AEEGTLTIMVGG---DEEAFERVRPLLE 151 (163)
T ss_dssp HGGG--S-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEE-EEEESHHHH--HHHTTEEEEEES----HHHHHHHHHHHH
T ss_pred Hhhc--cccceEEEecCCcchhhhhhhhhhhhhccceeee-eeeeccccc--ccccceEEEccC---CHHHHHHHHHHHH
Confidence 6 76 8999999999998877777776665 35678887 477776532 124554666543 6788999999999
Q ss_pred HcCCeEE
Q 023897 165 SEGCKML 171 (275)
Q Consensus 165 ~~G~~v~ 171 (275)
.+|.+++
T Consensus 152 ~~~~~v~ 158 (163)
T PF03446_consen 152 AMGKNVY 158 (163)
T ss_dssp HHEEEEE
T ss_pred HHhCCce
Confidence 9999888
No 29
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.84 E-value=2.2e-19 Score=157.31 Aligned_cols=169 Identities=20% Similarity=0.230 Sum_probs=134.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc---C
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS---L 87 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~---l 87 (275)
|||+|||+|+||.+|++.|.+.|++|++|||++..+...+.|.....++.++ ++++|+||+|+|.+ .+.+++.. +
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~-~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQV-TEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHH-HhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 5899999999999999999999999999999875444456788777788885 58999999999987 56777643 3
Q ss_pred -CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHH
Q 023897 88 -PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFES 165 (275)
Q Consensus 88 -~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (275)
+. +.+|++++|++++.....+.+.+.+ ..+..|+. +|++|...+. ..|...+++.+ +++.+++++++|+.
T Consensus 80 ~~~--~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a--~~g~l~~~~gG---~~~~~~~~~p~l~~ 151 (292)
T PRK15059 80 TKA--SLKGKTIVDMSSISPIETKRFARQVNELGGDYLD-APVSGGEIGA--REGTLSIMVGG---DEAVFERVKPLFEL 151 (292)
T ss_pred hcc--CCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHH--hcCcEEEEEcC---CHHHHHHHHHHHHH
Confidence 44 6789999999999887666665554 34678888 6999877532 25665666532 67889999999999
Q ss_pred cCCeEEEcChhHHHHHHHHhhhhH
Q 023897 166 EGCKMLEMSCEEHDKVAAKSQFLT 189 (275)
Q Consensus 166 ~G~~v~~~~~~~hD~~~a~~~~lp 189 (275)
+|.+++++++..+...+.+++++-
T Consensus 152 ~g~~~~~~G~~G~g~~~Kl~~N~l 175 (292)
T PRK15059 152 LGKNITLVGGNGDGQTCKVANQII 175 (292)
T ss_pred HcCCcEEeCCccHHHHHHHHHHHH
Confidence 999999999888888888775443
No 30
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.84 E-value=1.8e-19 Score=155.56 Aligned_cols=235 Identities=20% Similarity=0.229 Sum_probs=169.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCC---eEEEEcCChhh-h-HHHHc-CceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGH---ILRATSRTDHS-Q-LCHRS-GISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~---~V~~~dr~~~~-~-~a~~~-g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
|||+|||+|+||+++++.|.+.|+ .+.+|+|+++. + .+... ++..+.+++++ ++++|+||+|+|++.+.+++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~-~~~aDvVilav~p~~~~~vl~ 79 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAV-VDRSDVVFLAVRPQIAEEVLR 79 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHH-HHhCCEEEEEeCHHHHHHHHH
Confidence 589999999999999999999885 35789998853 3 33334 46777788885 488999999999999999998
Q ss_pred cCCCCCCCCCcEEEeCC-CCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897 86 SLPVHCLQRRTLIADVL-SVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE 164 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~-s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 164 (275)
.+. +.++++++++. +++ .+.+++.++.+.+.+..||+...... .+. ..+++ + .+.++++|+
T Consensus 80 ~l~---~~~~~~vis~~ag~~---~~~l~~~~~~~~~~~r~~P~~~~a~~----~g~-t~~~~----~---~~~~~~l~~ 141 (258)
T PRK06476 80 ALR---FRPGQTVISVIAATD---RAALLEWIGHDVKLVRAIPLPFVAER----KGV-TAIYP----P---DPFVAALFD 141 (258)
T ss_pred Hhc---cCCCCEEEEECCCCC---HHHHHHHhCCCCCEEEECCCChhhhC----CCC-eEecC----C---HHHHHHHHH
Confidence 873 45666666544 444 35566666555677888888554432 232 33332 1 257899999
Q ss_pred HcCCeEEEcChhHHHHHHHHhhhhHHHHHHHH-------hhccccc---CcccCcchHHHHHHh-hcCCCCChhhHHHH-
Q 023897 165 SEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVL-------SELEIQS---TSMNTKGFETLIRLK-ESSVNDSFDLFSGL- 232 (275)
Q Consensus 165 ~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l-------~~~~~~~---~~l~~~~~~~~~rl~-~~~~~~~p~~~~~i- 232 (275)
.+|..+++.+++++|.+++..+ +|..+...+ .+.|++. ..+..+.+....+++ ... +.+|+.+.+-
T Consensus 142 ~lG~~~~~~~e~~~d~~~a~~s-~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~-~~~~~~l~~~v 219 (258)
T PRK06476 142 ALGTAVECDSEEEYDLLAAASA-LMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRST-KTDFSALSREF 219 (258)
T ss_pred hcCCcEEECChHhccceeehhc-cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHhC
Confidence 9998888778999999999875 453332222 2346653 457888999999994 443 5666666555
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHhcchhHHHhhcC
Q 023897 233 YIHNRFAKQELLDLEAAFEKVKHKLQQKMEEVQLEQS 269 (275)
Q Consensus 233 ~~~N~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~ 269 (275)
...+..+.+.|+.|++ ..+++.+.++.+++.++-+
T Consensus 220 ~spgGtT~~gl~~le~--~~~~~~~~~a~~aa~~r~~ 254 (258)
T PRK06476 220 STKGGLNEQVLNDFSR--QGGYAALTDALDRVLRRIN 254 (258)
T ss_pred CCCCchHHHHHHHHHH--CChHHHHHHHHHHHHHHhh
Confidence 5577788899999987 5899999999988876644
No 31
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.81 E-value=2.6e-18 Score=150.81 Aligned_cols=169 Identities=18% Similarity=0.237 Sum_probs=128.7
Q ss_pred eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHh---hcC
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVL---NSL 87 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~---~~l 87 (275)
||+|||+|.||.++|..|.+.|++|++|||+++ .+...+.|....++..++ ++++|+||+|+|.. .+..++ ..+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~-~~~aDivi~~vp~~~~~~~v~~~~~~~ 79 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQV-TEQADVIFTMVPDSPQVEEVAFGENGI 79 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHH-HhcCCEEEEecCCHHHHHHHHcCcchH
Confidence 599999999999999999999999999999985 455566777767788775 48999999999986 455565 224
Q ss_pred -CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHH
Q 023897 88 -PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFES 165 (275)
Q Consensus 88 -~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (275)
+. ++++++++|++++.....+.+.+.+. .+..|+. +|++|.+.. ...+...++.++ +++.++.++++++.
T Consensus 80 ~~~--~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~-~pv~g~~~~--a~~g~l~i~~gg---~~~~~~~~~~ll~~ 151 (291)
T TIGR01505 80 IEG--AKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD-APVSGGEIG--AIEGTLSIMVGG---DQAVFDRVKPLFEA 151 (291)
T ss_pred hhc--CCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe-cCCCCCHHH--HhcCCEEEEecC---CHHHHHHHHHHHHH
Confidence 44 67899999998887755555655543 3567887 799887532 224544555542 67888999999999
Q ss_pred cCCeEEEcChhHHHHHHHHhhhhHH
Q 023897 166 EGCKMLEMSCEEHDKVAAKSQFLTH 190 (275)
Q Consensus 166 ~G~~v~~~~~~~hD~~~a~~~~lp~ 190 (275)
+|.+++++++..+...+.+++++-.
T Consensus 152 lg~~~~~~g~~g~a~~~Kl~~n~~~ 176 (291)
T TIGR01505 152 LGKNIVLVGGNGDGQTCKVANQIIV 176 (291)
T ss_pred hcCCeEEeCCCCHHHHHHHHHHHHH
Confidence 9999999987777766676664443
No 32
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.80 E-value=5.4e-18 Score=148.46 Aligned_cols=179 Identities=12% Similarity=0.038 Sum_probs=132.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-------------------------cCceEecChHHHh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-------------------------SGISFFSDKRAFL 64 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-------------------------~g~~~~~~~~~~~ 64 (275)
.+||+|||+|.||+++|..|+.+|++|++||++++ .+.+.+ .+++.+++.+++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a- 81 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA- 81 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH-
Confidence 46899999999999999999999999999999974 222110 133567788875
Q ss_pred ccCCCEEEEecCch--hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897 65 EADNDVILISTSIL--SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF 141 (275)
Q Consensus 65 ~~~aD~iilavp~~--~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~ 141 (275)
++++|+||.|+|.+ ...++++++ +. +++++++++.+|++.. ..+.+.++...+|++.||..++. ...
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~--~~~~~ii~sntSt~~~--~~~~~~~~~~~r~vg~Hf~~p~~------~~~ 151 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKV--APEKTIFATNSSTLLP--SQFAEATGRPEKFLALHFANEIW------KNN 151 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhh--CCCCCEEEECcccCCH--HHHHhhcCCcccEEEEcCCCCCC------cCC
Confidence 48999999999976 567888888 76 7888999877776642 34555555556899999955543 233
Q ss_pred ceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHhhcc
Q 023897 142 AFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLSELE 200 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~~~~ 200 (275)
.+.+++...++++.++.+.++++.+|.+++.+.++.|+.+...+.+.--.-+..+.+.|
T Consensus 152 lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g 210 (287)
T PRK08293 152 TAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKG 210 (287)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcC
Confidence 45556556678899999999999999999999889999887766533222333444444
No 33
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.80 E-value=3.5e-18 Score=149.73 Aligned_cols=165 Identities=13% Similarity=0.160 Sum_probs=133.0
Q ss_pred EEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCc-hhHHHHh---hcC-CC
Q 023897 16 IIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSI-LSLSEVL---NSL-PV 89 (275)
Q Consensus 16 IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~-~~~~~v~---~~l-~~ 89 (275)
|||+|.||.+||+.|.++|++|++|||+++ .+...+.|+..+.++.++ ++++|+||+|+|+ ..+.+++ +.+ +.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~-~~~advVil~vp~~~~~~~v~~g~~~l~~~ 79 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEA-AEGADRVITMLPAGQHVISVYSGDEGILPK 79 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHH-HhcCCEEEEeCCChHHHHHHHcCcchHhhc
Confidence 689999999999999999999999999985 455566788777888886 5899999999998 5568887 566 55
Q ss_pred CCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCC
Q 023897 90 HCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGC 168 (275)
Q Consensus 90 ~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 168 (275)
++++++++|++++.....+.+.+.+. .+..|+.. |++|...+. ..|...+++.+ +++.+++++++|+.+|.
T Consensus 80 --~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda-Pv~Gg~~~a--~~g~l~~~~gg---~~~~~~~~~~~l~~~g~ 151 (288)
T TIGR01692 80 --VAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA-PVSGGVGGA--RAGTLTFMVGG---VAEEFAAAEPVLGPMGR 151 (288)
T ss_pred --CCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC-CCCCCHHHH--hhCcEEEEECC---CHHHHHHHHHHHHHhcC
Confidence 78899999999998877777766553 46788885 998877532 24555666643 57788999999999999
Q ss_pred eEEEcChhHHHHHHHHhhhhH
Q 023897 169 KMLEMSCEEHDKVAAKSQFLT 189 (275)
Q Consensus 169 ~v~~~~~~~hD~~~a~~~~lp 189 (275)
+++++++......+.++.++.
T Consensus 152 ~~~~~g~~g~g~~~Kl~~n~~ 172 (288)
T TIGR01692 152 NIVHCGDHGAGQAAKICNNML 172 (288)
T ss_pred CeEeeCCCCHHHHHHHHHHHH
Confidence 999998888888888877654
No 34
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.80 E-value=3.6e-18 Score=150.40 Aligned_cols=205 Identities=14% Similarity=0.077 Sum_probs=149.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh--hhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD--HSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS 86 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~--~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~ 86 (275)
..++|+|||+|+||.++|+.|.+.|++|+++++.. ....+.+.|+... ++.++ ++++|+|++++|++ ....+.++
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea-~~~ADiVvLaVpp~~~~~~v~~e 79 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEA-IPQADLIMNLLPDEVQHEVYEAE 79 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHH-HhcCCEEEEeCCcHhHHHHHHHH
Confidence 45789999999999999999999999887765543 2344556788754 57775 48999999999999 66666777
Q ss_pred C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCC-c--CCccccceeeeeeecCChHHHHHHHHH
Q 023897 87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESG-Q--NGWKDFAFVYEKVRIRDEATCSSFLRI 162 (275)
Q Consensus 87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~-~--~~~~g~~~~~~~~~~~~~~~~~~~~~l 162 (275)
+ +. ++++.+|.-..++. +..++..++.+..++..+|+.+...- . ..-.|.+.++......+++..+.+..+
T Consensus 80 i~~~--l~~g~iVs~aaG~~---i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~ 154 (314)
T TIGR00465 80 IQPL--LKEGKTLGFSHGFN---IHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAY 154 (314)
T ss_pred HHhh--CCCCcEEEEeCCcc---HhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHH
Confidence 8 76 77777665555543 35566667767789999998877631 0 001566666533322367788999999
Q ss_pred HHHcCCe-------EE--EcChhHHHHHHHHhhhhHHHHH---HHHhhccccc---CcccCcchHHHHHHhhcC
Q 023897 163 FESEGCK-------ML--EMSCEEHDKVAAKSQFLTHTIG---RVLSELEIQS---TSMNTKGFETLIRLKESS 221 (275)
Q Consensus 163 ~~~~G~~-------v~--~~~~~~hD~~~a~~~~lp~~~a---~~l~~~~~~~---~~l~~~~~~~~~rl~~~~ 221 (275)
++.+|.. .+ .++++..|..+++++++|.++. .+|++.|+++ ..++...+....++....
T Consensus 155 ~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~g~~~l~~e~ 228 (314)
T TIGR00465 155 AKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELKLIVDLIYEG 228 (314)
T ss_pred HHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999976 32 5667788989999999998654 4777788874 346677777777777654
No 35
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.79 E-value=1.6e-17 Score=145.98 Aligned_cols=166 Identities=14% Similarity=0.181 Sum_probs=127.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhhc---
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLNS--- 86 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~~--- 86 (275)
+||+|||+|+||++||..|.++|++|++|||+++ .+...+.|+....++.++ ++++|+||+|+|++. +.+++..
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~-~~~aDvVi~~vp~~~~~~~vl~~~~~ 80 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQA-AAGAEFVITMLPNGDLVRSVLFGENG 80 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHH-HhcCCEEEEecCCHHHHHHHHcCccc
Confidence 5899999999999999999999999999999985 455556677777788875 589999999999984 6777653
Q ss_pred C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897 87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE 164 (275)
Q Consensus 87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 164 (275)
+ +. ++++++++|++++.....+.+.+.+ ..+..|+. -|+.|.... ...|...++.+. +++.+++++.+|+
T Consensus 81 i~~~--l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ld-apV~g~~~~--a~~g~l~~~~gg---~~~~~~~~~p~l~ 152 (296)
T PRK15461 81 VCEG--LSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMD-VPVGRTSDN--AITGTLLLLAGG---TAEQVERATPILM 152 (296)
T ss_pred Hhhc--CCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE-ccCCCCHHH--HHhCcEEEEECC---CHHHHHHHHHHHH
Confidence 3 44 6789999999998876666665554 34577876 587776432 225665666542 6788999999999
Q ss_pred HcCCeEEEcChhHHHHHHHHhh
Q 023897 165 SEGCKMLEMSCEEHDKVAAKSQ 186 (275)
Q Consensus 165 ~~G~~v~~~~~~~hD~~~a~~~ 186 (275)
.+|.+++++++......+.++.
T Consensus 153 ~~g~~~~~~g~~G~g~~~Kl~~ 174 (296)
T PRK15461 153 AMGNELINAGGPGMGIRVKLIN 174 (296)
T ss_pred HHcCCeEeeCCCCHHHHHHHHH
Confidence 9999999988765555555554
No 36
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.79 E-value=1.3e-17 Score=141.55 Aligned_cols=177 Identities=16% Similarity=0.210 Sum_probs=138.9
Q ss_pred CCCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHH
Q 023897 6 PSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEV 83 (275)
Q Consensus 6 ~~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v 83 (275)
-..+..++||+||+|.||..|+..|.++||.|++|||+.. ++...+.|.++..++.|+ ++++|+||.+||... +.++
T Consensus 30 ~~~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeV-ae~sDvvitmv~~~~~v~~v 108 (327)
T KOG0409|consen 30 RITPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEV-AEDSDVVITMVPNPKDVKDV 108 (327)
T ss_pred cCCcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHH-HhhcCEEEEEcCChHhhHHH
Confidence 3455678999999999999999999999999999999984 677888899999999996 699999999999864 5566
Q ss_pred hhcC-C-CCCCCCCcEE-EeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHH
Q 023897 84 LNSL-P-VHCLQRRTLI-ADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSF 159 (275)
Q Consensus 84 ~~~l-~-~~~l~~~~iv-~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 159 (275)
+..- . ...++++... +|.+++++....++.+.. ..+.+|+. -|+.|...+. .+|..+++.. .|++.+++.
T Consensus 109 ~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vD-APVSGg~~~A--~~G~Ltimag---Gde~~~~~~ 182 (327)
T KOG0409|consen 109 LLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVD-APVSGGVKGA--EEGTLTIMAG---GDEALFEAA 182 (327)
T ss_pred hcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEe-ccccCCchhh--hcCeEEEEec---CcHHHHHHH
Confidence 5543 1 1114566655 899999988877776654 34577887 5888877543 3677777764 378899999
Q ss_pred HHHHHHcCCeEEEcChhHHHHHHHHhhhhH
Q 023897 160 LRIFESEGCKMLEMSCEEHDKVAAKSQFLT 189 (275)
Q Consensus 160 ~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp 189 (275)
..+|+.+|.+++++..-.....+.++.++.
T Consensus 183 ~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~ 212 (327)
T KOG0409|consen 183 SPVFKLMGKNVVFLGGVGNGQAAKLCNNML 212 (327)
T ss_pred HHHHHHhcceEEEecccCchHHHHHHHHHH
Confidence 999999999999998776666666665544
No 37
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.78 E-value=1.5e-17 Score=146.37 Aligned_cols=168 Identities=13% Similarity=0.148 Sum_probs=129.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccC---CCEEEEecCch-hHHHHhhc
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEAD---NDVILISTSIL-SLSEVLNS 86 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~---aD~iilavp~~-~~~~v~~~ 86 (275)
|+|||||+|+||..+|..|.+.|++|++|||+++ .+...+.|.....+++++ +++ +|+||+|+|++ .+.++++.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~-~~~~~~advVi~~vp~~~~~~~v~~~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEEL-VSKLEAPRTIWVMVPAGEVTESVIKD 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHH-HHhCCCCCEEEEEecCchHHHHHHHH
Confidence 5899999999999999999999999999999985 455566788888888885 354 69999999998 78899888
Q ss_pred C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897 87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE 164 (275)
Q Consensus 87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 164 (275)
+ +. ++++++++|++++.......+.+.+ ..+..|+. .|++|...+. ..|. .++..+ +++.+++++++|+
T Consensus 80 i~~~--l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vd-apV~G~~~~a--~~g~-~~~~gG---~~~~~~~~~~~l~ 150 (299)
T PRK12490 80 LYPL--LSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD-CGTSGGVWGL--RNGY-CLMVGG---DKEIYDRLEPVFK 150 (299)
T ss_pred Hhcc--CCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEe-CCCCCCHHHH--hcCC-eEEecC---CHHHHHHHHHHHH
Confidence 8 76 7889999999888765555554444 34677876 5888775432 2455 455432 6788999999999
Q ss_pred HcCC---eEEEcChhHHHHHHHHhhhhH
Q 023897 165 SEGC---KMLEMSCEEHDKVAAKSQFLT 189 (275)
Q Consensus 165 ~~G~---~v~~~~~~~hD~~~a~~~~lp 189 (275)
.+|. +++++.+......+.++.++.
T Consensus 151 ~~~~~~~~~~~~G~~g~a~~~Kl~~n~~ 178 (299)
T PRK12490 151 ALAPEGPGYVHAGPVGSGHFLKMVHNGI 178 (299)
T ss_pred HhcCcCCcEEEECCcCHHHHHHHHHHHH
Confidence 9997 678887766666666665433
No 38
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.78 E-value=4.9e-18 Score=152.09 Aligned_cols=211 Identities=15% Similarity=0.164 Sum_probs=154.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCC-------CeEEEEcCChhh------hHHHH--------------cCceEecChH
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQG-------HILRATSRTDHS------QLCHR--------------SGISFFSDKR 61 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g-------~~V~~~dr~~~~------~~a~~--------------~g~~~~~~~~ 61 (275)
-..+||+|||+|.||+++|..|.++| ++|.+|.|+++. +.-.+ .++..+++++
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 45689999999999999999999997 799999998741 11111 1235677888
Q ss_pred HHhccCCCEEEEecCchhHHHHhhcC-C--CCCCCCCcEEEeCC-CCC------hhHHHHHHhhCCCCCceeecCCCCCC
Q 023897 62 AFLEADNDVILISTSILSLSEVLNSL-P--VHCLQRRTLIADVL-SVK------EYPRNVLLQVLPEEMDVLCTHPMFGP 131 (275)
Q Consensus 62 ~~~~~~aD~iilavp~~~~~~v~~~l-~--~~~l~~~~iv~d~~-s~k------~~~~~~l~~~l~~~~~~v~~hP~~g~ 131 (275)
++ ++++|+||++||++.++++++++ + . ++++.+++.++ ++. ..+.+.+++.++. .+ --+.||
T Consensus 89 ea-v~~aDiIvlAVPsq~l~~vl~~l~~~~~--l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~---~~LsGP 160 (365)
T PTZ00345 89 EA-VEDADLLIFVIPHQFLESVLSQIKENNN--LKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PC---CALSGA 160 (365)
T ss_pred HH-HhcCCEEEEEcChHHHHHHHHHhccccc--cCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--Ce---EEEECC
Confidence 76 58999999999999999999999 7 6 66676666432 111 1245566666642 11 124688
Q ss_pred CCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh-hhhHHHHHHHHh--h-cccc--c-C
Q 023897 132 ESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS-QFLTHTIGRVLS--E-LEIQ--S-T 204 (275)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~-~~lp~~~a~~l~--~-~~~~--~-~ 204 (275)
+.+.|...+.|+..+-. +.+.+..+.++++|+.-.++++..+ |.+...+ +.+++++|.+.. + ++.. . .
T Consensus 161 s~A~Eva~~~pt~~via-s~~~~~a~~~~~lf~~~~frvy~s~----Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~ka 235 (365)
T PTZ00345 161 NVANDVAREEFSEATIG-CEDKDDALIWQRLFDRPYFKINCVP----DVIGVEVCGALKNIIALAAGFCDGLGLGTNTKS 235 (365)
T ss_pred CHHHHHHcCCCcEEEEE-eCCHHHHHHHHHHhCCCcEEEEEcC----CcccchhhHHHHHHHHHHHHHHHhcCCChhHHH
Confidence 88777778888766643 3478888999999999999999876 7776654 699999876554 3 3332 2 4
Q ss_pred cccCcchHHHHHHhhcCCC-CChhhHHHH
Q 023897 205 SMNTKGFETLIRLKESSVN-DSFDLFSGL 232 (275)
Q Consensus 205 ~l~~~~~~~~~rl~~~~~~-~~p~~~~~i 232 (275)
.+.++|+++|.|++....+ .+|+++.++
T Consensus 236 alitrgl~Em~~l~~a~g~~~~~~T~~gl 264 (365)
T PTZ00345 236 AIIRIGLEEMKLFGKIFFPNVMDETFFES 264 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhcc
Confidence 6889999999999998732 478887664
No 39
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.77 E-value=4.6e-17 Score=143.22 Aligned_cols=168 Identities=20% Similarity=0.256 Sum_probs=126.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHh---h
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVL---N 85 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~---~ 85 (275)
+|||+|||+|.||.++|..|.+.|++|++|||++. .+...+.|+...++++++ ++++|+||+|+|... +..++ +
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~-~~~~d~vi~~vp~~~~~~~v~~~~~ 80 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAV-AEQCDVIITMLPNSPHVKEVALGEN 80 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHH-HhcCCEEEEeCCCHHHHHHHHcCcc
Confidence 46899999999999999999999999999999985 455566788777788886 489999999999754 45565 3
Q ss_pred cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHH
Q 023897 86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIF 163 (275)
Q Consensus 86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 163 (275)
.+ +. ++++++++|+++++....+.+.+.+. .+..|+. .|++|.... ...+...++.++ +++.++++++++
T Consensus 81 ~~~~~--~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d-~pv~g~~~~--a~~g~l~i~~gg---~~~~~~~~~~~l 152 (296)
T PRK11559 81 GIIEG--AKPGTVVIDMSSIAPLASREIAAALKAKGIEMLD-APVSGGEPK--AIDGTLSVMVGG---DKAIFDKYYDLM 152 (296)
T ss_pred hHhhc--CCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEE-cCCCCCHHH--HhhCcEEEEECC---CHHHHHHHHHHH
Confidence 34 55 78899999999998766666666543 3566776 488776532 124555555532 577899999999
Q ss_pred HHcCCeEEEcChhHHHHHHHHhhh
Q 023897 164 ESEGCKMLEMSCEEHDKVAAKSQF 187 (275)
Q Consensus 164 ~~~G~~v~~~~~~~hD~~~a~~~~ 187 (275)
+.+|.+++++.+.....++.++.+
T Consensus 153 ~~~~~~~~~~g~~g~a~~~Kl~~n 176 (296)
T PRK11559 153 KAMAGSVVHTGDIGAGNVTKLANQ 176 (296)
T ss_pred HHhcCCeEEeCCcCHHHHHHHHHH
Confidence 999999988876554555555543
No 40
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.77 E-value=4.9e-18 Score=151.10 Aligned_cols=204 Identities=10% Similarity=0.107 Sum_probs=150.2
Q ss_pred eEEEEcCChHHHHHHHHHHHCC--------CeEEEEcCC-----hhhhHHHH---------------cCceEecChHHHh
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQG--------HILRATSRT-----DHSQLCHR---------------SGISFFSDKRAFL 64 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g--------~~V~~~dr~-----~~~~~a~~---------------~g~~~~~~~~~~~ 64 (275)
||+|||+|+||+++|..|+++| ++|.+|.|+ ++.....+ .++..+++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea- 79 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA- 79 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH-
Confidence 6999999999999999999999 999999983 32211110 123467888886
Q ss_pred ccCCCEEEEecCchhHHHHhhcC-CCCCCCCCcEEEeCC-C------CChhHHHHHHhhCCCCCceeecCCCCCCCCCcC
Q 023897 65 EADNDVILISTSILSLSEVLNSL-PVHCLQRRTLIADVL-S------VKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQN 136 (275)
Q Consensus 65 ~~~aD~iilavp~~~~~~v~~~l-~~~~l~~~~iv~d~~-s------~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~ 136 (275)
++++|+||++||++.++++++++ ++ ++++++++.++ + ....+.+.+++.++. .+ --+.||..+.|
T Consensus 80 l~~ADiIIlAVPs~~i~~vl~~l~~~--l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~~---~~lsGP~~A~E 152 (342)
T TIGR03376 80 AKGADILVFVIPHQFLEGICKQLKGH--VKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--PC---GVLSGANLANE 152 (342)
T ss_pred HhcCCEEEEECChHHHHHHHHHHHhh--cCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--Ce---EEeeCcchHHH
Confidence 58999999999999999999999 77 77787776543 1 111234556665521 11 22568888877
Q ss_pred CccccceeeeeeecCC----hHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh-hhhHHHHHHHHh--h-cccc--c-Cc
Q 023897 137 GWKDFAFVYEKVRIRD----EATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS-QFLTHTIGRVLS--E-LEIQ--S-TS 205 (275)
Q Consensus 137 ~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~-~~lp~~~a~~l~--~-~~~~--~-~~ 205 (275)
...+.|+..+-. +.+ .+..+.++++|+.-.++++..+ |.+...+ +.+++++|.+.. + ++.. . ..
T Consensus 153 va~~~pt~~~ia-~~~~~~~~~~a~~~~~lf~~~~frv~~s~----Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aa 227 (342)
T TIGR03376 153 VAKEKFSETTVG-YRDPADFDVDARVLKALFHRPYFRVNVVD----DVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAA 227 (342)
T ss_pred HHcCCCceEEEE-eCCCcchHHHHHHHHHHhCCCCEEEEEcC----CcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 778887766543 235 6788999999999889999887 8777755 699999876554 3 2332 2 46
Q ss_pred ccCcchHHHHHHhhcCCCCChh--hHH
Q 023897 206 MNTKGFETLIRLKESSVNDSFD--LFS 230 (275)
Q Consensus 206 l~~~~~~~~~rl~~~~~~~~p~--~~~ 230 (275)
+.++|+++|.|++... +++|+ ++.
T Consensus 228 litrgl~Em~~l~~~~-g~~~~~~T~~ 253 (342)
T TIGR03376 228 VMRRGLLEMIKFARMF-FPTGEVTFTF 253 (342)
T ss_pred HHHHHHHHHHHHHHHh-CCCCCCCccc
Confidence 8999999999999987 77776 654
No 41
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.77 E-value=7.3e-17 Score=141.97 Aligned_cols=166 Identities=13% Similarity=0.127 Sum_probs=122.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHh--ccCCCEEEEecCchhHHHHhhcC-
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFL--EADNDVILISTSILSLSEVLNSL- 87 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~--~~~aD~iilavp~~~~~~v~~~l- 87 (275)
|||+|||+|.||++||..|.++|++|.+|||+++ .+...+.|.....+++++. +..+|+||+|+|++.+.++++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~ 80 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA 80 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence 5899999999999999999999999999999985 4455556665556665532 24689999999999999999999
Q ss_pred CCCCCCCCcEEEeCCCCChhHHHH-HHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHc
Q 023897 88 PVHCLQRRTLIADVLSVKEYPRNV-LLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESE 166 (275)
Q Consensus 88 ~~~~l~~~~iv~d~~s~k~~~~~~-l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (275)
+. ++++.+++|+++........ ..+....+.+|+.. |++|...+. ..| ..++..+ +++.++.++.+|+.+
T Consensus 81 ~~--l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda-~vsGg~~~a--~~G-~~~~~gG---~~~~~~~~~~~l~~~ 151 (298)
T TIGR00872 81 PT--LEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDC-GTSGGVWGR--ERG-YCFMIGG---DGEAFARAEPLFADV 151 (298)
T ss_pred hh--CCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEec-CCCCCHHHH--hcC-CeeeeCC---CHHHHHHHHHHHHHh
Confidence 77 88999999998875433333 33333456788885 566554332 245 3555432 678899999999999
Q ss_pred CC---eEEEcChhHHHHHHHHhh
Q 023897 167 GC---KMLEMSCEEHDKVAAKSQ 186 (275)
Q Consensus 167 G~---~v~~~~~~~hD~~~a~~~ 186 (275)
+. .++++.+......+..+.
T Consensus 152 ~~~~~~~~~~G~~G~~~~~K~~~ 174 (298)
T TIGR00872 152 APEEQGYLYCGPCGSGHFVKMVH 174 (298)
T ss_pred cCcCCCEEEECCccHhHHHHHHH
Confidence 86 467777665555666554
No 42
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.77 E-value=3.8e-17 Score=151.36 Aligned_cols=172 Identities=15% Similarity=0.107 Sum_probs=130.9
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHH----cCce---EecChHHHhccC---CCEEEEecC
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHR----SGIS---FFSDKRAFLEAD---NDVILISTS 76 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~----~g~~---~~~~~~~~~~~~---aD~iilavp 76 (275)
+...++|||||+|.||+.||+.|.++|++|++|||+++. +...+ .|.. ...+++++ ++. +|+||+|+|
T Consensus 3 ~~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~-v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 3 SAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDF-VLSIQKPRSVIILVK 81 (493)
T ss_pred CCCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHH-HhcCCCCCEEEEECC
Confidence 445678999999999999999999999999999999853 32222 2543 56788886 354 999999999
Q ss_pred ch-hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCCh
Q 023897 77 IL-SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDE 153 (275)
Q Consensus 77 ~~-~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~ 153 (275)
.. .+.+++..+ +. +.+|.+++|++++.......+.+.+ ..+.+|++ .|++|.+.+. ..|. .+++++ ++
T Consensus 82 ~~~aV~~Vi~gl~~~--l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fld-apVSGG~~gA--~~G~-~im~GG---~~ 152 (493)
T PLN02350 82 AGAPVDQTIKALSEY--MEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLG-MGVSGGEEGA--RNGP-SLMPGG---SF 152 (493)
T ss_pred CcHHHHHHHHHHHhh--cCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe-CCCcCCHHHh--cCCC-eEEecC---CH
Confidence 86 467788888 77 8899999999988765555555444 35678887 6888877542 2555 666543 78
Q ss_pred HHHHHHHHHHHHcCCe------EEEcChhHHHHHHHHhhhhH
Q 023897 154 ATCSSFLRIFESEGCK------MLEMSCEEHDKVAAKSQFLT 189 (275)
Q Consensus 154 ~~~~~~~~l~~~~G~~------v~~~~~~~hD~~~a~~~~lp 189 (275)
+.+++++.+|+.++.+ ++++.+.....++.+++++-
T Consensus 153 ~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i 194 (493)
T PLN02350 153 EAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGI 194 (493)
T ss_pred HHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHH
Confidence 8999999999999965 88888777777777776444
No 43
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.76 E-value=1.3e-16 Score=141.08 Aligned_cols=161 Identities=17% Similarity=0.124 Sum_probs=120.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhH-----------HHHcC-------------ceEecChHHHhcc
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQL-----------CHRSG-------------ISFFSDKRAFLEA 66 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~-----------a~~~g-------------~~~~~~~~~~~~~ 66 (275)
|+|+|||+|.||+++|..|+++|++|++||++++ .+. ..+.| +..+.++.++ ++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a-~~ 81 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA-VA 81 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh-hC
Confidence 6899999999999999999999999999999974 222 12334 2567788775 48
Q ss_pred CCCEEEEecCch--hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccce
Q 023897 67 DNDVILISTSIL--SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAF 143 (275)
Q Consensus 67 ~aD~iilavp~~--~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~ 143 (275)
++|+|+.|+|.+ ....++.++ .. .+++.++. +|++......+.+.+....++++.||+.++... ...
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~--~~~~~ii~--ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~------~lv 151 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDAL--APPHAILA--SSTSALLASAFTEHLAGRERCLVAHPINPPYLI------PVV 151 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHh--CCCcceEE--EeCCCCCHHHHHHhcCCcccEEEEecCCCcccC------ceE
Confidence 999999999986 355667777 44 45555554 444555566677777656689999999876421 134
Q ss_pred eeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHH
Q 023897 144 VYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAA 183 (275)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a 183 (275)
.+++...++++.++.++++++.+|.+++++.++.++.+..
T Consensus 152 eiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~n 191 (308)
T PRK06129 152 EVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLN 191 (308)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHH
Confidence 4565555688899999999999999999998777776433
No 44
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.75 E-value=2e-16 Score=139.50 Aligned_cols=166 Identities=14% Similarity=0.181 Sum_probs=129.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccC---CCEEEEecCch-hHHHHhhc
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEAD---NDVILISTSIL-SLSEVLNS 86 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~---aD~iilavp~~-~~~~v~~~ 86 (275)
|||+|||+|.||+.+|+.|.+.|++|++|||+++ .+...+.|+....+++++ ++. +|+||+++|+. .+.+++..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~-~~~~~~~dvvi~~v~~~~~~~~v~~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEEL-VAKLPAPRVVWLMVPAGEITDATIDE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHH-HhhcCCCCEEEEEecCCcHHHHHHHH
Confidence 5899999999999999999999999999999985 455566788888888875 344 69999999997 77888888
Q ss_pred C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897 87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE 164 (275)
Q Consensus 87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 164 (275)
+ +. ++++++++|++++.......+.+.+ ..+..|+. -|++|...+.+ .|. .++.. .+++.+++++.+|+
T Consensus 80 l~~~--l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d-apvsG~~~~a~--~g~-~~~~g---G~~~~~~~~~~~l~ 150 (301)
T PRK09599 80 LAPL--LSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD-VGTSGGVWGLE--RGY-CLMIG---GDKEAVERLEPIFK 150 (301)
T ss_pred HHhh--CCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe-CCCCcCHHHHh--cCC-eEEec---CCHHHHHHHHHHHH
Confidence 8 66 7889999999887765554444433 35678886 79888764322 454 55553 26788999999999
Q ss_pred HcCC----eEEEcChhHHHHHHHHhhh
Q 023897 165 SEGC----KMLEMSCEEHDKVAAKSQF 187 (275)
Q Consensus 165 ~~G~----~v~~~~~~~hD~~~a~~~~ 187 (275)
.++. +++++.+......+.++.+
T Consensus 151 ~~~~~~~~~~~~~G~~G~g~~~Kl~~n 177 (301)
T PRK09599 151 ALAPRAEDGYLHAGPVGAGHFVKMVHN 177 (301)
T ss_pred HHcccccCCeEeECCCcHHHHHHHHHH
Confidence 9998 7888887666666666543
No 45
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.73 E-value=8e-16 Score=137.09 Aligned_cols=198 Identities=15% Similarity=0.204 Sum_probs=139.4
Q ss_pred CeEEEEcCChH--------------------HHHHHHHHHHCCCeEEEEcCChh-h-----hHHHHcCceEecChHHHhc
Q 023897 12 LKIGIIGFGPF--------------------GQFLAKTMIKQGHILRATSRTDH-S-----QLCHRSGISFFSDKRAFLE 65 (275)
Q Consensus 12 ~~I~IIG~G~m--------------------G~sla~~L~~~g~~V~~~dr~~~-~-----~~a~~~g~~~~~~~~~~~~ 65 (275)
|||.|.|+|+- |..||..|+++||+|++|||++. . ....+.|+..++++.++ +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~ea-a 79 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEA-A 79 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHH-H
Confidence 68999999985 89999999999999999999874 1 23456788888888886 4
Q ss_pred cCCCEEEEecCchh-HHHHhhcC-CCCCCCCCcEEEeCCCCChhHH-HHHHhhCCC---CCceeecCCCCCCCCCcCCcc
Q 023897 66 ADNDVILISTSILS-LSEVLNSL-PVHCLQRRTLIADVLSVKEYPR-NVLLQVLPE---EMDVLCTHPMFGPESGQNGWK 139 (275)
Q Consensus 66 ~~aD~iilavp~~~-~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~-~~l~~~l~~---~~~~v~~hP~~g~~~~~~~~~ 139 (275)
.++|+||+|+|++. +.+++..+ +. ++++++++|+++++.... +.+.+.++. ...+...||+.-+. .+ .
T Consensus 80 ~~ADvVIlaVP~~~~v~~Vl~~L~~~--L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G--ae--~ 153 (342)
T PRK12557 80 KHGEIHILFTPFGKKTVEIAKNILPH--LPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG--TP--Q 153 (342)
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhh--CCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc--cc--c
Confidence 89999999999988 88999888 77 888999999999887765 566666542 23455667653111 11 1
Q ss_pred ccceeeeee-----ecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHH----HH------Hh-hccccc
Q 023897 140 DFAFVYEKV-----RIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIG----RV------LS-ELEIQS 203 (275)
Q Consensus 140 g~~~~~~~~-----~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a----~~------l~-~~~~~~ 203 (275)
+...++++. ...+++.+++++++|+.+|.+++++++. ....+.+++|++. .+ ++ +.+.++
T Consensus 154 g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g----~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p 229 (342)
T PRK12557 154 HGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPAD----VVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAP 229 (342)
T ss_pred chheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 222333321 1236778899999999999999999853 3445555565432 11 12 123332
Q ss_pred ----CcccCcchHHHHHHhhc
Q 023897 204 ----TSMNTKGFETLIRLKES 220 (275)
Q Consensus 204 ----~~l~~~~~~~~~rl~~~ 220 (275)
..++..++..+.+|+..
T Consensus 230 ~~~~~~~~~~~~~~~a~l~~~ 250 (342)
T PRK12557 230 KEMIEKQILMTLQTMASLVET 250 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888764
No 46
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.73 E-value=1.1e-16 Score=136.90 Aligned_cols=219 Identities=18% Similarity=0.160 Sum_probs=165.0
Q ss_pred CeEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHH
Q 023897 35 HILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNV 111 (275)
Q Consensus 35 ~~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~ 111 (275)
++|++|+|+++. ..+.+.|+..+.++.++ +.++|+||+||||+.+.+++.++ +. +.++++|+++.+.. ..+.
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~-~~~aDiIiLaVkP~~i~~vl~~l~~~--~~~~~~ivS~~agi--~~~~ 84 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVASSDAQEA-VKEADVVFLAVKPQDLEEVLSELKSE--KGKDKLLISIAAGV--TLEK 84 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEEeCChHHH-HhhCCEEEEEeCHHHHHHHHHHHhhh--ccCCCEEEEecCCC--CHHH
Confidence 689999999853 34455688877888875 58999999999999999999999 65 66677888766532 3567
Q ss_pred HHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHH
Q 023897 112 LLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHT 191 (275)
Q Consensus 112 l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~ 191 (275)
++++++.+.++++.+|+.....+ +|. ..++.....+++..+.++++|+.+| +++++++++.|.+++++++.|.+
T Consensus 85 l~~~~~~~~~ivR~mPn~~~~~~----~g~-t~~~~~~~~~~~~~~~v~~lf~~~G-~~~~v~E~~~~~~talsgsgPA~ 158 (245)
T TIGR00112 85 LSQLLGGTRRVVRVMPNTPAKVG----AGV-TAIAANANVSEEDRALVLALFKAVG-EVVELPEALMDAVTALSGSGPAY 158 (245)
T ss_pred HHHHcCCCCeEEEECCChHHHHh----CCe-EEEecCCCCCHHHHHHHHHHHHhCC-CEEEECHHHcchHHhhccCcHHH
Confidence 78888755679999998766654 344 3333333345667889999999999 56667888999999999999987
Q ss_pred HHH---HHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHhcc
Q 023897 192 IGR---VLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGLYI-HNRFAKQELLDLEAAFEKVKHKLQQK 260 (275)
Q Consensus 192 ~a~---~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~-~N~~~~~~l~~~~~~l~~~~~~l~~~ 260 (275)
++. ++.+ .|++. ..++...+.++.+++... +.+|+.+.+-+. .+..+.+.|+.|.+ ..+++.+.++
T Consensus 159 ~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~-~~~~~~l~~~v~spgGtT~~gl~~Le~--~~~~~~~~~a 235 (245)
T TIGR00112 159 VFLFIEALADAGVKQGLPRELALELAAQTVKGAAKLLEES-GEHPALLKDQVTSPGGTTIAGLAVLEE--KGVRGAVIEA 235 (245)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHcCCCCcHHHHHHHHHHHH--CChHHHHHHH
Confidence 654 4444 35543 468899999999999765 566776655544 66677899999988 5899999888
Q ss_pred hhHHHhh
Q 023897 261 MEEVQLE 267 (275)
Q Consensus 261 ~~~~~~~ 267 (275)
...+..+
T Consensus 236 ~~aa~~r 242 (245)
T TIGR00112 236 VEAAVRR 242 (245)
T ss_pred HHHHHHH
Confidence 8877643
No 47
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=4.2e-16 Score=136.22 Aligned_cols=151 Identities=16% Similarity=0.140 Sum_probs=114.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhH-----------HHHcC-------------ceEecChHHHhc
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQL-----------CHRSG-------------ISFFSDKRAFLE 65 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~-----------a~~~g-------------~~~~~~~~~~~~ 65 (275)
++||+|||+|.||.++|..|+++|++|++||++++ .+. ..+.| +..+++.++ +
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~--~ 80 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD--L 80 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH--h
Confidence 46899999999999999999999999999999985 221 12223 345667665 3
Q ss_pred cCCCEEEEecCchhH--HHHhhcC-CCCCCCCCcEE-EeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897 66 ADNDVILISTSILSL--SEVLNSL-PVHCLQRRTLI-ADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF 141 (275)
Q Consensus 66 ~~aD~iilavp~~~~--~~v~~~l-~~~~l~~~~iv-~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~ 141 (275)
++||+||+|+|++.. .+++.++ +. +++++++ +++++.+. ..+.+.++...++++.||+.++...+ +.
T Consensus 81 ~~aDlVi~av~e~~~~k~~~~~~l~~~--~~~~~il~s~ts~~~~---~~la~~~~~~~r~ig~h~~~P~~~~~----~v 151 (282)
T PRK05808 81 KDADLVIEAATENMDLKKKIFAQLDEI--AKPEAILATNTSSLSI---TELAAATKRPDKVIGMHFFNPVPVMK----LV 151 (282)
T ss_pred ccCCeeeecccccHHHHHHHHHHHHhh--CCCCcEEEECCCCCCH---HHHHHhhCCCcceEEeeccCCcccCc----cE
Confidence 899999999997654 6888888 77 8889888 45555443 45666665556899999998776531 22
Q ss_pred ceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897 142 AFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS 174 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~ 174 (275)
-+++...++++..+.+.++++.+|..++.+.
T Consensus 152 --ev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~ 182 (282)
T PRK05808 152 --EIIRGLATSDATHEAVEALAKKIGKTPVEVK 182 (282)
T ss_pred --EEeCCCCCCHHHHHHHHHHHHHcCCeeEEec
Confidence 2444556688999999999999999988873
No 48
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.71 E-value=3.6e-16 Score=144.60 Aligned_cols=168 Identities=14% Similarity=0.142 Sum_probs=125.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHH----cC--ceEecChHHHhcc---CCCEEEEecCch-h
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHR----SG--ISFFSDKRAFLEA---DNDVILISTSIL-S 79 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~----~g--~~~~~~~~~~~~~---~aD~iilavp~~-~ 79 (275)
+.+|||||+|.||++||..|.++||+|++|||+++. +...+ .| +..+.+++++ ++ ++|+||+++|+. .
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~-v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEEL-VNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHH-HhcCCCCCEEEEEeCChHH
Confidence 358999999999999999999999999999999853 32222 25 3467788886 34 489999997664 6
Q ss_pred HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHH-HHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHH
Q 023897 80 LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRN-VLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCS 157 (275)
Q Consensus 80 ~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~-~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~ 157 (275)
+.++++++ +. +.+|.+++|+++....... ...+....+.+|++ .|++|.+.+. ..|. .++.++ ++++++
T Consensus 80 v~~vi~~l~~~--L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fld-apVSGG~~gA--~~G~-~lm~GG---~~~a~~ 150 (470)
T PTZ00142 80 VDETIDNLLPL--LEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLG-MGVSGGEEGA--RYGP-SLMPGG---NKEAYD 150 (470)
T ss_pred HHHHHHHHHhh--CCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEc-CCCCCCHHHH--hcCC-EEEEeC---CHHHHH
Confidence 78999998 87 8999999999876543333 33333345788887 5888876432 2454 666543 788999
Q ss_pred HHHHHHHHcCCe------EEEcChhHHHHHHHHhhhh
Q 023897 158 SFLRIFESEGCK------MLEMSCEEHDKVAAKSQFL 188 (275)
Q Consensus 158 ~~~~l~~~~G~~------v~~~~~~~hD~~~a~~~~l 188 (275)
+++++|+.++.+ +.++.+.....++.+++++
T Consensus 151 ~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ 187 (470)
T PTZ00142 151 HVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNG 187 (470)
T ss_pred HHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHH
Confidence 999999999988 7788877666666666543
No 49
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=7.3e-16 Score=136.52 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=113.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-----cC--------------ceEecChHHHhccCCCE
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-----SG--------------ISFFSDKRAFLEADNDV 70 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-----~g--------------~~~~~~~~~~~~~~aD~ 70 (275)
.+||+|||+|.||+++|..|++.|++|++||++++ .+.+.+ .| +..+++++++ ++++|+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~aDl 82 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA-VSGADL 82 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH-hccCCE
Confidence 46899999999999999999999999999999874 222211 11 2456677775 489999
Q ss_pred EEEecCchh--HHHHhhcC-CCCCCCCCcEEE-eCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeee
Q 023897 71 ILISTSILS--LSEVLNSL-PVHCLQRRTLIA-DVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYE 146 (275)
Q Consensus 71 iilavp~~~--~~~v~~~l-~~~~l~~~~iv~-d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~ 146 (275)
||+|||++. ..+++.++ +. ++++++++ ++++.. ...+.+.++...+|++.||..++... ..+.++
T Consensus 83 Vi~av~~~~~~~~~v~~~l~~~--~~~~~ii~s~tsg~~---~~~l~~~~~~~~~~ig~h~~~p~~~~------~l~~i~ 151 (311)
T PRK06130 83 VIEAVPEKLELKRDVFARLDGL--CDPDTIFATNTSGLP---ITAIAQAVTRPERFVGTHFFTPADVI------PLVEVV 151 (311)
T ss_pred EEEeccCcHHHHHHHHHHHHHh--CCCCcEEEECCCCCC---HHHHHhhcCCcccEEEEccCCCCccC------ceEEEe
Confidence 999999974 56788888 65 67777774 444432 45666666655689999997776542 123444
Q ss_pred eeecCChHHHHHHHHHHHHcCCeEEEcChh
Q 023897 147 KVRIRDEATCSSFLRIFESEGCKMLEMSCE 176 (275)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~ 176 (275)
+...++++.++.++++++.+|..++++.++
T Consensus 152 ~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d 181 (311)
T PRK06130 152 RGDKTSPQTVATTMALLRSIGKRPVLVKKD 181 (311)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 444457889999999999999988888654
No 50
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.70 E-value=5.8e-15 Score=138.36 Aligned_cols=154 Identities=16% Similarity=0.100 Sum_probs=114.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHH-------------------HcC-ceEecChHHHhccCCC
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCH-------------------RSG-ISFFSDKRAFLEADND 69 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~-------------------~~g-~~~~~~~~~~~~~~aD 69 (275)
.|||+|||+|.||+++|..|.++|++|++||++++. +... ..| +..+++++++ +++||
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea-~~~aD 82 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEA-VAGAD 82 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHH-hcCCC
Confidence 368999999999999999999999999999999852 2110 112 5677788875 48999
Q ss_pred EEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeee
Q 023897 70 VILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYE 146 (275)
Q Consensus 70 ~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~ 146 (275)
+|+.|+|++. -..++.++ +. ++++++|...+| +.....+.+.+....+++..||+.++.. +....++
T Consensus 83 ~Vieavpe~~~vk~~l~~~l~~~--~~~~~iI~SsTs--gi~~s~l~~~~~~~~r~~~~hP~nP~~~------~~Lvevv 152 (495)
T PRK07531 83 WIQESVPERLDLKRRVLAEIDAA--ARPDALIGSSTS--GFLPSDLQEGMTHPERLFVAHPYNPVYL------LPLVELV 152 (495)
T ss_pred EEEEcCcCCHHHHHHHHHHHHhh--CCCCcEEEEcCC--CCCHHHHHhhcCCcceEEEEecCCCccc------CceEEEc
Confidence 9999999985 34566677 55 677776654333 2224466666665567889999887753 2334556
Q ss_pred eeecCChHHHHHHHHHHHHcCCeEEEcCh
Q 023897 147 KVRIRDEATCSSFLRIFESEGCKMLEMSC 175 (275)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~G~~v~~~~~ 175 (275)
++..++++.+++++++++.+|.+++++..
T Consensus 153 ~g~~t~~e~~~~~~~~~~~lG~~~v~~~k 181 (495)
T PRK07531 153 GGGKTSPETIRRAKEILREIGMKPVHIAK 181 (495)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEeecC
Confidence 55556788999999999999999988864
No 51
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.70 E-value=2e-15 Score=132.75 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=112.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhH-----------HHHcC-------------ceEecChHHHh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQL-----------CHRSG-------------ISFFSDKRAFL 64 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~-----------a~~~g-------------~~~~~~~~~~~ 64 (275)
..+||+|||+|.||.++|..|+.+|++|++||++++ .+. ..+.| ....++.+.
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 80 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE-- 80 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH--
Confidence 346899999999999999999999999999999984 221 11122 234445543
Q ss_pred ccCCCEEEEecC--chhHHHHhhcC-CCCCCCCCcEEE-eCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccc
Q 023897 65 EADNDVILISTS--ILSLSEVLNSL-PVHCLQRRTLIA-DVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKD 140 (275)
Q Consensus 65 ~~~aD~iilavp--~~~~~~v~~~l-~~~~l~~~~iv~-d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g 140 (275)
+++||+||.|+| ++....++.++ +. ++++++++ +++++. ...+++.+....++++.||+.+|...
T Consensus 81 ~~~aD~Vieav~e~~~~k~~v~~~l~~~--~~~~~il~s~tS~i~---~~~l~~~~~~~~r~~g~h~~~pp~~~------ 149 (295)
T PLN02545 81 LRDADFIIEAIVESEDLKKKLFSELDRI--CKPSAILASNTSSIS---ITRLASATQRPQQVIGMHFMNPPPIM------ 149 (295)
T ss_pred hCCCCEEEEcCccCHHHHHHHHHHHHhh--CCCCcEEEECCCCCC---HHHHHhhcCCCcceEEEeccCCcccC------
Confidence 489999999999 55566778878 66 78888886 566553 34566665555689999999888743
Q ss_pred cceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897 141 FAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS 174 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~ 174 (275)
..+.+++...++++..+.++++++.+|..++++.
T Consensus 150 ~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~ 183 (295)
T PLN02545 150 KLVEIIRGADTSDEVFDATKALAERFGKTVVCSQ 183 (295)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEec
Confidence 2244555555688899999999999998887764
No 52
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.69 E-value=9.9e-17 Score=141.85 Aligned_cols=195 Identities=23% Similarity=0.321 Sum_probs=125.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC-C
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL-P 88 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l-~ 88 (275)
+.|||+|||+|.||+++|..|.++||+|++|+|++. .+++++ ++++|+||+|+|...+.++++.+ +
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~------------~~~~~~-~~~advvi~~vp~~~~~~v~~~l~~ 69 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG------------LSLAAV-LADADVIVSAVSMKGVRPVAEQVQA 69 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC------------CCHHHH-HhcCCEEEEECChHHHHHHHHHHHH
Confidence 458999999999999999999999999999999863 355665 47999999999999999999888 5
Q ss_pred CCCCCCCcEEEeCCC-CCh----hHHHHHHhhCCCCCceeecCCC---CCCCCCcCCccccceeeeeeecCChHHHHHHH
Q 023897 89 VHCLQRRTLIADVLS-VKE----YPRNVLLQVLPEEMDVLCTHPM---FGPESGQNGWKDFAFVYEKVRIRDEATCSSFL 160 (275)
Q Consensus 89 ~~~l~~~~iv~d~~s-~k~----~~~~~l~~~l~~~~~~v~~hP~---~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (275)
. .+.+++++++++. ... ...+.+.+.+ ..+|+ .||..+.+...+.+...+.. +.+.+..+.++
T Consensus 70 ~-~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~-------~~~~v~~i~gp~~a~ei~~~~~~~~~~a-g~~~~~~~~v~ 140 (308)
T PRK14619 70 L-NLPPETIIVTATKGLDPETTRTPSQIWQAAF-------PNHPVVVLSGPNLSKEIQQGLPAATVVA-SRDLAAAETVQ 140 (308)
T ss_pred h-cCCCCcEEEEeCCcccCCCCcCHHHHHHHHc-------CCCceEEEECCCcHHHHhcCCCeEEEEE-eCCHHHHHHHH
Confidence 2 1577888888653 211 1122222222 23454 45554332223333322222 23678899999
Q ss_pred HHHHHcCCeEEEcChhHHHHHH-HHhhhhHHHHHHHHh--h---ccccc-CcccCcchHHHHHHhhcCCCCChhhHHH
Q 023897 161 RIFESEGCKMLEMSCEEHDKVA-AKSQFLTHTIGRVLS--E---LEIQS-TSMNTKGFETLIRLKESSVNDSFDLFSG 231 (275)
Q Consensus 161 ~l~~~~G~~v~~~~~~~hD~~~-a~~~~lp~~~a~~l~--~---~~~~~-~~l~~~~~~~~~rl~~~~~~~~p~~~~~ 231 (275)
++|+..|.+++..+ |.+. .+.+.+.++++.+.. + .+.+. ..+...++.++.++++.. +.+|+.+.+
T Consensus 141 ~ll~~~~~~~~~~~----d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~-G~~~~t~~~ 213 (308)
T PRK14619 141 QIFSSERFRVYTNS----DPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHL-GAQTETFYG 213 (308)
T ss_pred HHhCCCcEEEEecC----CchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHh-CCCcccccc
Confidence 99999999988765 3333 233455555543322 1 11111 234566677777777765 656655543
No 53
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.69 E-value=4.4e-16 Score=138.64 Aligned_cols=211 Identities=21% Similarity=0.262 Sum_probs=129.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc--------------CceEecChHHHhccCCCEEEEec
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS--------------GISFFSDKRAFLEADNDVILIST 75 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~--------------g~~~~~~~~~~~~~~aD~iilav 75 (275)
||||+|||+|.||+.+|..|.+.|++|++|+|++. .+...+. ++...++++++ ++++|+||+||
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~~v 79 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEA-LADADLILVAV 79 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHH-HhCCCEEEEeC
Confidence 47999999999999999999999999999999974 3322222 34556677765 47999999999
Q ss_pred CchhHHHHhhcC-CCCCCCCCcEEEeCC-CCChh----HHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeee
Q 023897 76 SILSLSEVLNSL-PVHCLQRRTLIADVL-SVKEY----PRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVR 149 (275)
Q Consensus 76 p~~~~~~v~~~l-~~~~l~~~~iv~d~~-s~k~~----~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~ 149 (275)
|++.+.+++..+ +. ++++++++++. ++... ..+.+++.++.. ....++.+|....+...+.+..+...
T Consensus 80 ~~~~~~~v~~~l~~~--~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~---~~~~~~~~P~~~~~~~~g~~~~~~~~- 153 (325)
T PRK00094 80 PSQALREVLKQLKPL--LPPDAPIVWATKGIEPGTGKLLSEVLEEELPDL---APIAVLSGPSFAKEVARGLPTAVVIA- 153 (325)
T ss_pred CHHHHHHHHHHHHhh--cCCCCEEEEEeecccCCCCCcHHHHHHHHcCCC---CceEEEECccHHHHHHcCCCcEEEEE-
Confidence 999999999998 76 78889888876 33321 234445544321 11123344443221112333322212
Q ss_pred cCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHHHHh-----hccccc-CcccCcchHHHHHHhhcCCC
Q 023897 150 IRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGRVLS-----ELEIQS-TSMNTKGFETLIRLKESSVN 223 (275)
Q Consensus 150 ~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~~l~-----~~~~~~-~~l~~~~~~~~~rl~~~~~~ 223 (275)
+.+.+.++++.++|+..|.+++..+.-......++ +.++++.+.. ..+.+. ..+....+.++.++++.. +
T Consensus 154 ~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~---~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~-G 229 (325)
T PRK00094 154 STDEELAERVQELFHSPYFRVYTNTDVIGVELGGA---LKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVAL-G 229 (325)
T ss_pred eCCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHH---HHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHh-C
Confidence 23677889999999999988766542221122222 2222222211 111111 234555667777777665 6
Q ss_pred CChhhHHHH
Q 023897 224 DSFDLFSGL 232 (275)
Q Consensus 224 ~~p~~~~~i 232 (275)
-+|+.+.++
T Consensus 230 ~d~~~~~~~ 238 (325)
T PRK00094 230 ANPETFLGL 238 (325)
T ss_pred CChhhhhcc
Confidence 666666554
No 54
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.69 E-value=6.5e-16 Score=142.93 Aligned_cols=168 Identities=17% Similarity=0.172 Sum_probs=123.7
Q ss_pred eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc-----CceEecChHHHh--ccCCCEEEEecCc-hhHHHH
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS-----GISFFSDKRAFL--EADNDVILISTSI-LSLSEV 83 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~-----g~~~~~~~~~~~--~~~aD~iilavp~-~~~~~v 83 (275)
+|||||+|.||++||+.|.++|++|++|||+++ .+...+. ++....++++++ ++.+|+||+++|+ ..+.++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 489999999999999999999999999999985 3333332 255666777642 1368999999999 578899
Q ss_pred hhcC-CCCCCCCCcEEEeCCCCChhHHH-HHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHH
Q 023897 84 LNSL-PVHCLQRRTLIADVLSVKEYPRN-VLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLR 161 (275)
Q Consensus 84 ~~~l-~~~~l~~~~iv~d~~s~k~~~~~-~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 161 (275)
++++ +. +.+|.+++|++++...... ..++....+..|+++ |++|...+. ..|. .++.+ .+++.++++++
T Consensus 81 i~~l~~~--L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvda-pVsGG~~gA--~~G~-~im~G---G~~~a~~~~~p 151 (467)
T TIGR00873 81 INQLLPL--LEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGS-GVSGGEEGA--RKGP-SIMPG---GSAEAWPLVAP 151 (467)
T ss_pred HHHHHhh--CCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcC-CCCCCHHHH--hcCC-cCCCC---CCHHHHHHHHH
Confidence 9998 87 8999999999987644433 333333456888874 666655322 2454 55543 27889999999
Q ss_pred HHHHcCCeE------EEcChhHHHHHHHHhhhhH
Q 023897 162 IFESEGCKM------LEMSCEEHDKVAAKSQFLT 189 (275)
Q Consensus 162 l~~~~G~~v------~~~~~~~hD~~~a~~~~lp 189 (275)
+|+.++.++ .++.+.....++.+++++.
T Consensus 152 ~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i 185 (467)
T TIGR00873 152 IFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGI 185 (467)
T ss_pred HHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHH
Confidence 999999873 6777776666777765443
No 55
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.69 E-value=2.3e-15 Score=131.99 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=112.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH-------H----c-------------CceEecChHHHhcc
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH-------R----S-------------GISFFSDKRAFLEA 66 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~-------~----~-------------g~~~~~~~~~~~~~ 66 (275)
.||+|||+|.||+++|..|+++|++|++||++++ .+.+. . . +++.+++.+++ ++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~ 80 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA-VA 80 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh-hc
Confidence 5899999999999999999999999999999984 22211 1 1 23456777775 48
Q ss_pred CCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEE-EeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccc
Q 023897 67 DNDVILISTSILS--LSEVLNSL-PVHCLQRRTLI-ADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFA 142 (275)
Q Consensus 67 ~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv-~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~ 142 (275)
++|+||.|+|.+. ...++.++ +. +++++++ ++++++.. ..+.+.+....++++.|++.++.. +..
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~--~~~~~il~~~tSt~~~---~~l~~~~~~~~r~~g~h~~~Pv~~------~~L 149 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAH--APAECYIATNTSTMSP---TEIASFTKRPERVIAMHFFNPVHK------MKL 149 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhh--CCCCcEEEEcCCCCCH---HHHHhhcCCcccEEEEecCCCccc------Cce
Confidence 9999999999975 34666777 65 7888877 45555433 345565554457899999854432 234
Q ss_pred eeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897 143 FVYEKVRIRDEATCSSFLRIFESEGCKMLEMS 174 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~ 174 (275)
+.++++..++++.+++++++++.+|.+++++.
T Consensus 150 ve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~ 181 (288)
T PRK09260 150 VELIRGLETSDETVQVAKEVAEQMGKETVVVN 181 (288)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence 56666655688999999999999999998885
No 56
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.69 E-value=8.1e-16 Score=137.77 Aligned_cols=212 Identities=15% Similarity=0.232 Sum_probs=145.5
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHc---------C------ceEecChHHHhccCCCEE
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRS---------G------ISFFSDKRAFLEADNDVI 71 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~---------g------~~~~~~~~~~~~~~aD~i 71 (275)
...+|||+|||+|.||+++|..|+++| +|++|.|+++. +...+. + +..+++++++ ++++|+|
T Consensus 4 ~~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a-~~~aDlV 81 (341)
T PRK12439 4 AKREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEA-ANCADVV 81 (341)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHH-HhcCCEE
Confidence 345689999999999999999999999 68888888742 222111 1 2456677765 4899999
Q ss_pred EEecCchhHHHHhhcC-CCCCCCCCcEEEeCC-CCCh----hHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceee
Q 023897 72 LISTSILSLSEVLNSL-PVHCLQRRTLIADVL-SVKE----YPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVY 145 (275)
Q Consensus 72 ilavp~~~~~~v~~~l-~~~~l~~~~iv~d~~-s~k~----~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~ 145 (275)
|+|||++.++++++++ +. ++++++++.+. ++.. ...+.+++.++.....+ +.||....+...|.++..
T Consensus 82 ilavps~~~~~vl~~i~~~--l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~----l~GP~~a~ev~~g~~t~~ 155 (341)
T PRK12439 82 VMGVPSHGFRGVLTELAKE--LRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGI----LAGPNIAREVAEGYAAAA 155 (341)
T ss_pred EEEeCHHHHHHHHHHHHhh--cCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEE----EECCCHHHHHHcCCCeEE
Confidence 9999999999999999 77 77777666443 2211 12355666554221122 345555444445666544
Q ss_pred eeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh-hhhHHHHHHHHh--h-cccc--c-CcccCcchHHHHHHh
Q 023897 146 EKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS-QFLTHTIGRVLS--E-LEIQ--S-TSMNTKGFETLIRLK 218 (275)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~-~~lp~~~a~~l~--~-~~~~--~-~~l~~~~~~~~~rl~ 218 (275)
+.. +.+++..+.++++|+.-+++++..+ |...... ..+.++++.+.. + .+.. . ..+.+++++++.|++
T Consensus 156 via-~~~~~~~~~v~~lf~~~~~~v~~s~----Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~ 230 (341)
T PRK12439 156 VLA-MPDQHLATRLSPLFRTRRFRVYTTD----DVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLG 230 (341)
T ss_pred EEE-eCCHHHHHHHHHHhCCCCEEEEEcC----chHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 332 2366778999999999999998876 6665544 578887765433 2 2222 2 357789999999999
Q ss_pred hcCCCCChhhHHHHH
Q 023897 219 ESSVNDSFDLFSGLY 233 (275)
Q Consensus 219 ~~~~~~~p~~~~~i~ 233 (275)
... +.+|+++.++.
T Consensus 231 ~a~-G~~~~t~~gl~ 244 (341)
T PRK12439 231 VAM-GGNPETFAGLA 244 (341)
T ss_pred HHh-CCCcccccccc
Confidence 987 88898776643
No 57
>PLN02858 fructose-bisphosphate aldolase
Probab=99.66 E-value=5.8e-15 Score=151.50 Aligned_cols=170 Identities=15% Similarity=0.073 Sum_probs=129.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecC-chhHHHHhh--
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTS-ILSLSEVLN-- 85 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp-~~~~~~v~~-- 85 (275)
..++|||||+|.||..||..|.+.|++|++|||++. .......|.....++.++ ++++|+||+|+| +..+.+++.
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~-~~~aDvVi~~V~~~~~v~~Vl~g~ 401 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEV-AKDVDVLVIMVANEVQAENVLFGD 401 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHH-HhcCCEEEEecCChHHHHHHHhch
Confidence 447899999999999999999999999999999985 445556677777888886 589999999999 566778873
Q ss_pred -cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC---CCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHH
Q 023897 86 -SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP---EEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFL 160 (275)
Q Consensus 86 -~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~---~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 160 (275)
.+ +. +++|++++|++++.....+.+.+.+. .+..|+. -|+.|.... ...|...+++.+ +++.+++++
T Consensus 402 ~g~~~~--l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD-APVsGg~~~--A~~G~L~imvgG---~~~~~~~~~ 473 (1378)
T PLN02858 402 LGAVSA--LPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD-APVSGGVKR--AAMGTLTIMASG---TDEALKSAG 473 (1378)
T ss_pred hhHHhc--CCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE-ccCCCChhh--hhcCCceEEEEC---CHHHHHHHH
Confidence 24 44 68899999999988777666666543 4677876 477776643 225666666643 677899999
Q ss_pred HHHHHcCCeEEE-cChhHHHHHHHHhhhh
Q 023897 161 RIFESEGCKMLE-MSCEEHDKVAAKSQFL 188 (275)
Q Consensus 161 ~l~~~~G~~v~~-~~~~~hD~~~a~~~~l 188 (275)
.+|+.+|.++++ .++......+.++.++
T Consensus 474 plL~~lg~~i~~~~g~~G~a~~~KL~nN~ 502 (1378)
T PLN02858 474 SVLSALSEKLYVIKGGCGAGSGVKMVNQL 502 (1378)
T ss_pred HHHHHHhCcEEEeCCCCCHHHHHHHHHHH
Confidence 999999988876 4545556666666433
No 58
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.66 E-value=7.7e-15 Score=129.30 Aligned_cols=187 Identities=19% Similarity=0.122 Sum_probs=130.3
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHh-h
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL-N 85 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~-~ 85 (275)
.+.++|+|||+|+||.++|..|++.|++|++++++.. ...+.+.|+... +.+++ ++++|+|++++|+....+++ +
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~ea-a~~ADVVvLaVPd~~~~~V~~~ 92 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEA-AKWADVIMILLPDEVQAEVYEE 92 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHH-HhcCCEEEEcCCHHHHHHHHHH
Confidence 4568999999999999999999999999998887642 345666787664 77775 58999999999999889998 7
Q ss_pred cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCC-Cc--CCccccceeeeeeecCChHHHHHHHH
Q 023897 86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPES-GQ--NGWKDFAFVYEKVRIRDEATCSSFLR 161 (275)
Q Consensus 86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~-~~--~~~~g~~~~~~~~~~~~~~~~~~~~~ 161 (275)
++ +. ++++++++-+.+... ...+...+.+..++..+|..+... .. ..-.|.+.++......+.++.+.+..
T Consensus 93 ~I~~~--Lk~g~iL~~a~G~~i---~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~ 167 (330)
T PRK05479 93 EIEPN--LKEGAALAFAHGFNI---HFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALA 167 (330)
T ss_pred HHHhc--CCCCCEEEECCCCCh---hhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHH
Confidence 78 77 888988865555432 334444566778999999876651 11 11256776663322235778899999
Q ss_pred HHHHcCCeEE-----EcChh-HHHHHHH---HhhhhHHHHH---HHHhhcccc
Q 023897 162 IFESEGCKML-----EMSCE-EHDKVAA---KSQFLTHTIG---RVLSELEIQ 202 (275)
Q Consensus 162 l~~~~G~~v~-----~~~~~-~hD~~~a---~~~~lp~~~a---~~l~~~~~~ 202 (275)
+++.+|+... ...++ +.|.+.. +++.+..++. ..|.+.|++
T Consensus 168 l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~ 220 (330)
T PRK05479 168 YAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQ 220 (330)
T ss_pred HHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCC
Confidence 9999998753 33333 3676654 2334444443 344555654
No 59
>PLN02858 fructose-bisphosphate aldolase
Probab=99.66 E-value=7.9e-15 Score=150.49 Aligned_cols=170 Identities=11% Similarity=0.046 Sum_probs=132.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHh---h
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVL---N 85 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~---~ 85 (275)
..||||||+|.||..||..|.++||+|++|||++. .+...+.|.....++.++ +++||+||+|+|.. .+.+++ .
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~-a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEA-AKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHH-HhcCCEEEEEcCChHHHHHHHhchh
Confidence 46899999999999999999999999999999985 455666788888899996 58999999999986 456776 3
Q ss_pred cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CC--CceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHH
Q 023897 86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EE--MDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLR 161 (275)
Q Consensus 86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~--~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 161 (275)
.+ +. +++|.+++|++++.....+.+.+.+. .+ ..|+. -|++|...+. ..|...+++++ +++.+++++.
T Consensus 83 g~~~~--l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lD-aPVsGg~~~A--~~G~L~imvGG---~~~~~~~~~p 154 (1378)
T PLN02858 83 GAAKG--LQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVD-AYVSKGMSDL--LNGKLMIIASG---RSDAITRAQP 154 (1378)
T ss_pred hHHhc--CCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEE-ccCcCCHHHH--hcCCeEEEEcC---CHHHHHHHHH
Confidence 45 54 78899999999988777777666543 34 56776 5888776432 25666666643 6788999999
Q ss_pred HHHHcCCeEEE-cChhHHHHHHHHhhhhH
Q 023897 162 IFESEGCKMLE-MSCEEHDKVAAKSQFLT 189 (275)
Q Consensus 162 l~~~~G~~v~~-~~~~~hD~~~a~~~~lp 189 (275)
+|+.+|.++++ +.+......+.+++++-
T Consensus 155 ~l~~~g~~i~~~~G~~G~g~~~KL~nN~l 183 (1378)
T PLN02858 155 FLSAMCQKLYTFEGEIGAGSKVKMVNELL 183 (1378)
T ss_pred HHHHhcCceEEecCCCCHhHHHHHHHHHH
Confidence 99999988875 47666677777765443
No 60
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.66 E-value=3.2e-15 Score=124.35 Aligned_cols=239 Identities=17% Similarity=0.162 Sum_probs=178.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCC----eEEEEcCCh-hhh-HHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGH----ILRATSRTD-HSQ-LCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~----~V~~~dr~~-~~~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
|+|||||+|+|..++++.+...|. +++.+..+. ... .....|+..+.+..+. .+.+|+++++|+++.+.+++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~-~~~s~v~~~svKp~~i~~vls 79 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEV-LQASDVVFLSVKPQVIESVLS 79 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHH-HhhccceeEeecchhHHHHhh
Confidence 689999999999999999999985 677777744 333 3677788665555665 489999999999999999999
Q ss_pred cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHH
Q 023897 86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFE 164 (275)
Q Consensus 86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 164 (275)
++ +. +..+.+++.+.-.+. +..+++.++...++++.+|+.+...+ .+.. +++.......++.+.++++++
T Consensus 80 ~~~~~--~~~~~iivS~aaG~t--l~~l~~~l~~~~rviRvmpNtp~~v~----eg~s-v~~~g~~~~~~D~~l~~~ll~ 150 (267)
T KOG3124|consen 80 EIKPK--VSKGKIIVSVAAGKT--LSSLESKLSPPTRVIRVMPNTPSVVG----EGAS-VYAIGCHATNEDLELVEELLS 150 (267)
T ss_pred cCccc--cccceEEEEEeeccc--HHHHHHhcCCCCceEEecCCChhhhh----cCcE-EEeeCCCcchhhHHHHHHHHH
Confidence 99 54 677888887664333 46677777767889999998877765 3443 444444445667799999999
Q ss_pred HcCCeEEEcChhHHHHHHHHhhhhHHHH---HHHHhhcccc----c---CcccCcchHHHHHHhhcCCCCChhhHHHHHH
Q 023897 165 SEGCKMLEMSCEEHDKVAAKSQFLTHTI---GRVLSELEIQ----S---TSMNTKGFETLIRLKESSVNDSFDLFSGLYI 234 (275)
Q Consensus 165 ~~G~~v~~~~~~~hD~~~a~~~~lp~~~---a~~l~~~~~~----~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~ 234 (275)
.+| .+..+++.-.|.+++++++.|.+. ..+|++.|+. . .+++.++..+..++.... +++|....|-+.
T Consensus 151 ~vG-~~~evpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqtllGAakMVl~s-~qHP~~Lkd~V~ 228 (267)
T KOG3124|consen 151 AVG-LCEEVPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQTLLGAAKMVLAS-GQHPAQLKDDVC 228 (267)
T ss_pred hcC-cceeCcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHHHhc-cCCcHHHhCCCC
Confidence 999 567788999999999999999754 3577765443 2 357788888888888776 788987766655
Q ss_pred HCH-HHHHHHHHHHHHHHHHHHHHhcchhHH
Q 023897 235 HNR-FAKQELLDLEAAFEKVKHKLQQKMEEV 264 (275)
Q Consensus 235 ~N~-~~~~~l~~~~~~l~~~~~~l~~~~~~~ 264 (275)
+-. .++..+..|++ .-||..+.++.+++
T Consensus 229 SPgG~TI~glh~LE~--ggfRs~linaVeaa 257 (267)
T KOG3124|consen 229 SPGGTTIYGLHALEK--GGFRSGLINAVEAA 257 (267)
T ss_pred CCCcchHHHHHHHHh--CCchhHHHHHHHHH
Confidence 222 34577776666 35777777776665
No 61
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.65 E-value=1.7e-14 Score=126.77 Aligned_cols=152 Identities=19% Similarity=0.180 Sum_probs=110.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH-----------HcC-------------ceEecChHHHh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH-----------RSG-------------ISFFSDKRAFL 64 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~-----------~~g-------------~~~~~~~~~~~ 64 (275)
..+||+|||+|.||.++|..|+.+|++|++||++++ ...+. +.| ++.+++.++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 80 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-- 80 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH--
Confidence 457899999999999999999999999999999984 22211 123 345667755
Q ss_pred ccCCCEEEEecCch--hHHHHhhcC-CCCCCCCCcEEE-eCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccc
Q 023897 65 EADNDVILISTSIL--SLSEVLNSL-PVHCLQRRTLIA-DVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKD 140 (275)
Q Consensus 65 ~~~aD~iilavp~~--~~~~v~~~l-~~~~l~~~~iv~-d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g 140 (275)
++++|+||.|+|.+ ....++.++ +. ++++++++ ++++.. + ..+.+.+....++++.|++.++... +
T Consensus 81 ~~~aD~Vieavpe~~~~k~~~~~~l~~~--~~~~~ii~s~ts~~~--~-s~la~~~~~~~r~~g~h~~~p~~~~-----~ 150 (292)
T PRK07530 81 LADCDLVIEAATEDETVKRKIFAQLCPV--LKPEAILATNTSSIS--I-TRLASATDRPERFIGIHFMNPVPVM-----K 150 (292)
T ss_pred hcCCCEEEEcCcCCHHHHHHHHHHHHhh--CCCCcEEEEcCCCCC--H-HHHHhhcCCcccEEEeeccCCcccC-----c
Confidence 37999999999985 345777788 66 78888887 444443 2 3566655444678999998855432 1
Q ss_pred cceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897 141 FAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS 174 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~ 174 (275)
. ..+.....++++.++.+.++++.+|..++++.
T Consensus 151 ~-vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~ 183 (292)
T PRK07530 151 L-VELIRGIATDEATFEAAKEFVTKLGKTITVAE 183 (292)
T ss_pred e-EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence 2 22333445688899999999999999888764
No 62
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.65 E-value=1.4e-14 Score=127.91 Aligned_cols=161 Identities=16% Similarity=0.082 Sum_probs=118.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHH-----------HHc---------CceEecChHHHhccCCC
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLC-----------HRS---------GISFFSDKRAFLEADND 69 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a-----------~~~---------g~~~~~~~~~~~~~~aD 69 (275)
..||+|||+|.||+.+|..|+.+|++|++||++++. ..+ .+. .+..+++++++ +++||
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~a-v~~aD 85 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEAC-VADAD 85 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHH-hcCCC
Confidence 468999999999999999999999999999999742 211 112 12566788775 48999
Q ss_pred EEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeee
Q 023897 70 VILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYE 146 (275)
Q Consensus 70 ~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~ 146 (275)
+|+-|+|.+. -.+++.++ .. +++++++...+| +.....+.+.+....++++.||..+|..- ..+-++
T Consensus 86 lViEavpE~l~vK~~lf~~l~~~--~~~~aIlaSnTS--~l~~s~la~~~~~p~R~~g~HffnP~~~~------pLVEVv 155 (321)
T PRK07066 86 FIQESAPEREALKLELHERISRA--AKPDAIIASSTS--GLLPTDFYARATHPERCVVGHPFNPVYLL------PLVEVL 155 (321)
T ss_pred EEEECCcCCHHHHHHHHHHHHHh--CCCCeEEEECCC--ccCHHHHHHhcCCcccEEEEecCCccccC------ceEEEe
Confidence 9999999864 34677777 66 788887765444 33456667666666789999998777642 123344
Q ss_pred eeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHH
Q 023897 147 KVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVA 182 (275)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~ 182 (275)
++..++++.++.+.++++.+|..++++..+.-..+.
T Consensus 156 ~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~ 191 (321)
T PRK07066 156 GGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIA 191 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHH
Confidence 555678999999999999999998887433333333
No 63
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.65 E-value=1.8e-14 Score=132.39 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=114.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHH-------------------HcC-ceEecChHHHhccCCCE
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCH-------------------RSG-ISFFSDKRAFLEADNDV 70 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~-------------------~~g-~~~~~~~~~~~~~~aD~ 70 (275)
|||+|||+|.||..+|..|+++||+|++||++++. +... +.| ++.++++.++ ++++|+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~-~~~adv 79 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDA-IRDADV 79 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHH-HhhCCE
Confidence 58999999999999999999999999999999853 2111 123 5666777775 489999
Q ss_pred EEEecCch----------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHH-hhCCC------CC-ceeecCCCCCC
Q 023897 71 ILISTSIL----------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLL-QVLPE------EM-DVLCTHPMFGP 131 (275)
Q Consensus 71 iilavp~~----------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~-~~l~~------~~-~~v~~hP~~g~ 131 (275)
||+|||.. .+.++++.+ +. +++++++++.+++.....+.+. ..+.. +. ..+..+|.+..
T Consensus 80 vii~vpt~~~~~~~~d~~~v~~~~~~i~~~--l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 80 IIICVPTPLKEDGSPDLSYVESAAETIAKH--LRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR 157 (411)
T ss_pred EEEEeCCCCCCCCCcChHHHHHHHHHHHHh--cCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence 99999975 367777888 66 7889999998876544433332 22111 11 23556675544
Q ss_pred CCC-cCCccccceeeeeeecCChHHHHHHHHHHHHcC-CeEEEcChhHHHHHHHHhhh
Q 023897 132 ESG-QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEG-CKMLEMSCEEHDKVAAKSQF 187 (275)
Q Consensus 132 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G-~~v~~~~~~~hD~~~a~~~~ 187 (275)
+-. ...+...+.++.+ .+++..++++++++.++ ..++.++..+...++.++.+
T Consensus 158 ~G~~~~~~~~~~~iv~G---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N 212 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGG---ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAEN 212 (411)
T ss_pred CCChhhhhcCCCEEEEe---CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHH
Confidence 311 1112223355553 27888999999999997 45666555555566666543
No 64
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.64 E-value=2.3e-15 Score=134.34 Aligned_cols=206 Identities=17% Similarity=0.215 Sum_probs=123.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc--------C------ceEecChHHHhccCCCEEEEec
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS--------G------ISFFSDKRAFLEADNDVILIST 75 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~--------g------~~~~~~~~~~~~~~aD~iilav 75 (275)
+|||+|||+|.||+++|..|.++|++|++|+|+++ .+..... | +..+++++++ ++++|+||+|+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~-~~~aD~Vi~~v 82 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEA-LAGADFAVVAV 82 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHH-HcCCCEEEEEC
Confidence 57999999999999999999999999999999874 3222221 3 3456678775 48999999999
Q ss_pred CchhHHHHhhcCCCCCCCCCcEEEeCCC-CChh--HHHHHHhhCC----CCCceeecCCCCCCCCCcCCccccceeeeee
Q 023897 76 SILSLSEVLNSLPVHCLQRRTLIADVLS-VKEY--PRNVLLQVLP----EEMDVLCTHPMFGPESGQNGWKDFAFVYEKV 148 (275)
Q Consensus 76 p~~~~~~v~~~l~~~~l~~~~iv~d~~s-~k~~--~~~~l~~~l~----~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~ 148 (275)
|.+.+.++++.+ +++.+++++++ .... ..+.+.+.++ .+..+ +.||..+.+...+.+...+-.
T Consensus 83 ~~~~~~~v~~~l-----~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~-----~~gP~~a~~~~~~~~~~~~~~ 152 (328)
T PRK14618 83 PSKALRETLAGL-----PRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAV-----LSGPNHAEEIARFLPAATVVA 152 (328)
T ss_pred chHHHHHHHHhc-----CcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEE-----EECccHHHHHHcCCCeEEEEE
Confidence 999988888665 34567776654 2211 0223333321 12222 224443322223333222211
Q ss_pred ecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh-hhhHHHHHHHHhh-----ccccc-CcccCcchHHHHHHhhcC
Q 023897 149 RIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS-QFLTHTIGRVLSE-----LEIQS-TSMNTKGFETLIRLKESS 221 (275)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~-~~lp~~~a~~l~~-----~~~~~-~~l~~~~~~~~~rl~~~~ 221 (275)
+.+++..++++++|+..|.+++..+ |...... ..+.++++.++.. .+.+. ..+...+++++.++++..
T Consensus 153 -~~~~~~~~~v~~ll~~~~~~v~~~~----di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~ 227 (328)
T PRK14618 153 -SPEPGLARRVQAAFSGPSFRVYTSR----DRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVAL 227 (328)
T ss_pred -eCCHHHHHHHHHHhCCCcEEEEecC----CccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 2367788999999999999888754 3222222 2344443332221 11111 234556666666666665
Q ss_pred CCCChhhHHHHH
Q 023897 222 VNDSFDLFSGLY 233 (275)
Q Consensus 222 ~~~~p~~~~~i~ 233 (275)
+.+|+.+.+++
T Consensus 228 -G~~~~~~~~~~ 238 (328)
T PRK14618 228 -GAEEATFYGLS 238 (328)
T ss_pred -CCCccchhcCc
Confidence 66666555553
No 65
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.64 E-value=9.4e-15 Score=128.25 Aligned_cols=152 Identities=17% Similarity=0.157 Sum_probs=113.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH--------------HcC-------------ceEecChHH
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH--------------RSG-------------ISFFSDKRA 62 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~--------------~~g-------------~~~~~~~~~ 62 (275)
..||+|||+|.||+++|..|+++|++|++||++++ .+.+. +.| +..+++.+
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 81 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE- 81 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH-
Confidence 46899999999999999999999999999999984 32111 011 23445554
Q ss_pred HhccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcc
Q 023897 63 FLEADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWK 139 (275)
Q Consensus 63 ~~~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~ 139 (275)
. ++++|+||.|+|++. ..+++.++ +. +++++++++.+| +.....+.+.+....++++.||+.++...
T Consensus 82 ~-~~~aDlVieav~e~~~~k~~~~~~l~~~--~~~~~il~S~ts--g~~~~~la~~~~~~~r~ig~hf~~P~~~~----- 151 (291)
T PRK06035 82 S-LSDADFIVEAVPEKLDLKRKVFAELERN--VSPETIIASNTS--GIMIAEIATALERKDRFIGMHWFNPAPVM----- 151 (291)
T ss_pred H-hCCCCEEEEcCcCcHHHHHHHHHHHHhh--CCCCeEEEEcCC--CCCHHHHHhhcCCcccEEEEecCCCcccC-----
Confidence 3 389999999999985 56788888 66 788888875544 34556777776656789999998876643
Q ss_pred ccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897 140 DFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS 174 (275)
Q Consensus 140 g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~ 174 (275)
+..-+ .++..++++.++.+.++++.+|..++++.
T Consensus 152 ~~vEv-~~g~~T~~e~~~~~~~~~~~lgk~~v~v~ 185 (291)
T PRK06035 152 KLIEV-VRAALTSEETFNTTVELSKKIGKIPIEVA 185 (291)
T ss_pred ccEEE-eCCCCCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 11222 34455688899999999999999998884
No 66
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.62 E-value=1.1e-13 Score=126.99 Aligned_cols=231 Identities=12% Similarity=0.025 Sum_probs=137.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE--ecChHHHh--------------ccCCCEEEE
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF--FSDKRAFL--------------EADNDVILI 73 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~--~~~~~~~~--------------~~~aD~iil 73 (275)
.+|||+|||+|.||.++|..|+++||+|++||++++.....+.|... ...+++.+ .+++|+||+
T Consensus 2 ~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii 81 (415)
T PRK11064 2 SFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLI 81 (415)
T ss_pred CccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEE
Confidence 35899999999999999999999999999999998643333322210 01111110 147999999
Q ss_pred ecCc----------hhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC-C-------------CceeecCCC
Q 023897 74 STSI----------LSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE-E-------------MDVLCTHPM 128 (275)
Q Consensus 74 avp~----------~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~-~-------------~~~v~~hP~ 128 (275)
|||+ ..+.++++.+ +. +++|+++++.+++.....+.+...+.. + ...+...|-
T Consensus 82 ~vptp~~~~~~~dl~~v~~~~~~i~~~--l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE 159 (415)
T PRK11064 82 AVPTPFKGDHEPDLTYVEAAAKSIAPV--LKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPE 159 (415)
T ss_pred EcCCCCCCCCCcChHHHHHHHHHHHHh--CCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCC
Confidence 9998 4777888888 77 889999999888776655555432211 0 012233341
Q ss_pred C---CCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHHH-------HHh-
Q 023897 129 F---GPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIGR-------VLS- 197 (275)
Q Consensus 129 ~---g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a~-------~l~- 197 (275)
+ |... ..+ +.+..++.+ .+++..++++++++.++..++.++.-+...++.++.+.-..+-. .++
T Consensus 160 ~~~~G~~~--~~~-~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae 234 (415)
T PRK11064 160 RVLPGQVM--VEL-IKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICA 234 (415)
T ss_pred ccCCCChh--hhh-cCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111 011 223333432 26778899999999998776666655666666666543322111 122
Q ss_pred hccccc------------Ccc--cCcch------HHHHHHhhcCCCCChhhHHHHHHHCHHHH-HHHHHHHH
Q 023897 198 ELEIQS------------TSM--NTKGF------ETLIRLKESSVNDSFDLFSGLYIHNRFAK-QELLDLEA 248 (275)
Q Consensus 198 ~~~~~~------------~~l--~~~~~------~~~~rl~~~~~~~~p~~~~~i~~~N~~~~-~~l~~~~~ 248 (275)
..|.|. -.+ .+.|| +|..-|.... +.++.+|.....-|..-. ...+.+.+
T Consensus 235 ~~GiD~~~v~~~~~~~~ri~~l~pG~G~GG~ClpkD~~~L~~~~-~~~~~l~~~a~~~N~~~~~~v~~~~~~ 305 (415)
T PRK11064 235 DQGINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVAQN-PQQARLIRTAREVNDGKPHWVIDQVKA 305 (415)
T ss_pred HhCCCHHHHHHHhccCCCcccCCCCCCCCCccccccHHHHHHhc-CCccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 134431 011 12222 4555554433 556888888888886554 34444443
No 67
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.62 E-value=7.4e-14 Score=120.71 Aligned_cols=172 Identities=16% Similarity=0.248 Sum_probs=126.9
Q ss_pred CeEEEEcCChH--------------------HHHHHHHHHHCCCeEEEEcCChh-h-----hHHHHcCceEecChHHHhc
Q 023897 12 LKIGIIGFGPF--------------------GQFLAKTMIKQGHILRATSRTDH-S-----QLCHRSGISFFSDKRAFLE 65 (275)
Q Consensus 12 ~~I~IIG~G~m--------------------G~sla~~L~~~g~~V~~~dr~~~-~-----~~a~~~g~~~~~~~~~~~~ 65 (275)
|||.|.|+|+- |+.||+.|.++||+|++|||++. . ....+.|+..++++.++ +
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEA-A 79 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEA-A 79 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHH-H
Confidence 78999999985 88999999999999999999864 2 23566789888888886 5
Q ss_pred cCCCEEEEecCchh-HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHH-HHHhhC---CCCCceeecCCCCCCCCCcCCcc
Q 023897 66 ADNDVILISTSILS-LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRN-VLLQVL---PEEMDVLCTHPMFGPESGQNGWK 139 (275)
Q Consensus 66 ~~aD~iilavp~~~-~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~-~l~~~l---~~~~~~v~~hP~~g~~~~~~~~~ 139 (275)
+++|+||+|+|... +.+++..+ +. +++|++++|++++...... .+++.+ +.++.+.+.||-.-|+... +
T Consensus 80 a~ADVVIL~LPd~aaV~eVl~GLaa~--L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~---~ 154 (341)
T TIGR01724 80 KHGEIHVLFTPFGKGTFSIARTIIEH--VPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQ---H 154 (341)
T ss_pred hCCCEEEEecCCHHHHHHHHHHHHhc--CCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCC---C
Confidence 89999999999875 56888777 66 8899999999988765443 344422 3457788999987776432 1
Q ss_pred ccceeeee-----eecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHH
Q 023897 140 DFAFVYEK-----VRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTH 190 (275)
Q Consensus 140 g~~~~~~~-----~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~ 190 (275)
+ .+++.+ ..-.+++.++++.++.++.|..+|.++++-..-+.-..+.++.
T Consensus 155 ~-~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l~~~v~Dm~s~vta 209 (341)
T TIGR01724 155 G-HYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADVTSAVADMGSLVTA 209 (341)
T ss_pred c-eeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHH
Confidence 1 122221 1124788999999999999999999987543333334444443
No 68
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.61 E-value=2.8e-14 Score=116.38 Aligned_cols=149 Identities=18% Similarity=0.169 Sum_probs=105.2
Q ss_pred eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH-----------Hc-------------CceEecChHHHhccC
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH-----------RS-------------GISFFSDKRAFLEAD 67 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~-----------~~-------------g~~~~~~~~~~~~~~ 67 (275)
||+|||+|.||..+|..++.+|++|.+||++++ ...+. +. .++++++++++ .+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~--~~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEA--VD 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGG--CT
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHH--hh
Confidence 799999999999999999999999999999984 22111 11 23678899885 49
Q ss_pred CCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccccee
Q 023897 68 NDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFV 144 (275)
Q Consensus 68 aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~ 144 (275)
+|+||-|+|.+. -.+++.++ .. +++++++...+|.- ....+.+.++...++++.|+..++... ...=
T Consensus 79 adlViEai~E~l~~K~~~~~~l~~~--~~~~~ilasnTSsl--~i~~la~~~~~p~R~ig~Hf~~P~~~~------~lVE 148 (180)
T PF02737_consen 79 ADLVIEAIPEDLELKQELFAELDEI--CPPDTILASNTSSL--SISELAAALSRPERFIGMHFFNPPHLM------PLVE 148 (180)
T ss_dssp ESEEEE-S-SSHHHHHHHHHHHHCC--S-TTSEEEE--SSS---HHHHHTTSSTGGGEEEEEE-SSTTT--------EEE
T ss_pred hheehhhccccHHHHHHHHHHHHHH--hCCCceEEecCCCC--CHHHHHhccCcCceEEEEecccccccC------ceEE
Confidence 999999999864 35788888 66 78999998766643 346677777666789999998766532 2233
Q ss_pred eeeeecCChHHHHHHHHHHHHcCCeEEEc
Q 023897 145 YEKVRIRDEATCSSFLRIFESEGCKMLEM 173 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~~~l~~~~G~~v~~~ 173 (275)
+++...++++.++++.++++.+|..++.+
T Consensus 149 vv~~~~T~~~~~~~~~~~~~~~gk~pv~v 177 (180)
T PF02737_consen 149 VVPGPKTSPETVDRVRALLRSLGKTPVVV 177 (180)
T ss_dssp EEE-TTS-HHHHHHHHHHHHHTT-EEEEE
T ss_pred EeCCCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 34455678899999999999999988876
No 69
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.60 E-value=4e-14 Score=119.21 Aligned_cols=162 Identities=19% Similarity=0.187 Sum_probs=112.0
Q ss_pred CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhh-h-HHHH-------cCc--e-EecChHHHhccCCCEEEEecCch
Q 023897 12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHS-Q-LCHR-------SGI--S-FFSDKRAFLEADNDVILISTSIL 78 (275)
Q Consensus 12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~-~-~a~~-------~g~--~-~~~~~~~~~~~~aD~iilavp~~ 78 (275)
|||+||| +|+||++++..|.++|++|++++|+++. . .+.+ .|+ . ...+..++ +.++|+||+|||++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea-~~~aDvVilavp~~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEA-AKRADVVILAVPWD 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHH-HhcCCEEEEECCHH
Confidence 6899997 8999999999999999999999999843 2 1111 122 1 12355554 48999999999999
Q ss_pred hHHHHhhcC-CCCCCCCCcEEEeCCCCCh---------------hHHHHHHhhCCCCCceeecCCCCCCCCCcC-C-ccc
Q 023897 79 SLSEVLNSL-PVHCLQRRTLIADVLSVKE---------------YPRNVLLQVLPEEMDVLCTHPMFGPESGQN-G-WKD 140 (275)
Q Consensus 79 ~~~~v~~~l-~~~~l~~~~iv~d~~s~k~---------------~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~-~-~~g 140 (275)
.+.++++++ +. +. +++++|++.--. ...+.+++.++.+.++|...|+.+...... . ..+
T Consensus 80 ~~~~~l~~l~~~--l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~~~~~ 156 (219)
T TIGR01915 80 HVLKTLESLRDE--LS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVDDEVD 156 (219)
T ss_pred HHHHHHHHHHHh--cc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCCCCCC
Confidence 999999888 54 54 478888753211 112567777775478888888655442111 1 112
Q ss_pred cceeeeeeecCChHHHHHHHHHHHHc-CCeEEEcChhHHHH
Q 023897 141 FAFVYEKVRIRDEATCSSFLRIFESE-GCKMLEMSCEEHDK 180 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~-G~~v~~~~~~~hD~ 180 (275)
...+++ +.++++.+.+.+|.+.+ |++++...+-.+.+
T Consensus 157 ~~~~v~---Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~ 194 (219)
T TIGR01915 157 CDVLVC---GDDEEAKEVVAELAGRIDGLRALDAGPLENAA 194 (219)
T ss_pred CCEEEE---CCCHHHHHHHHHHHHhcCCCCcccCCchhhHH
Confidence 333333 33667788899999999 99998887654443
No 70
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.58 E-value=5.5e-14 Score=114.79 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=107.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh-hh--hHHHHcCceE-ecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD-HS--QLCHRSGISF-FSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~-~~--~~a~~~g~~~-~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
||+|+|+|+|+||+++|++|.+.||+|++.+|+. +. ..+...+..+ ..+++++ ++.+|+||++||...+.+++.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA-~~~aDVVvLAVP~~a~~~v~~~ 79 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDA-AALADVVVLAVPFEAIPDVLAE 79 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHH-HhcCCEEEEeccHHHHHhHHHH
Confidence 5899999999999999999999999999886655 32 2333444321 2345554 4789999999999999999999
Q ss_pred C-CCCCCCCCcEEEeCCCC---------------ChhHHHHHHhhCCCCCceeec-CCCCCCCCCcCCcc-ccceeeeee
Q 023897 87 L-PVHCLQRRTLIADVLSV---------------KEYPRNVLLQVLPEEMDVLCT-HPMFGPESGQNGWK-DFAFVYEKV 148 (275)
Q Consensus 87 l-~~~~l~~~~iv~d~~s~---------------k~~~~~~l~~~l~~~~~~v~~-hP~~g~~~~~~~~~-g~~~~~~~~ 148 (275)
+ .. + .|+|++|++.- .....+.+++.++.. ++|.. |-++.......... +...++.
T Consensus 80 l~~~--~-~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~a~~l~~~~~~~~~~~v~v-- 153 (211)
T COG2085 80 LRDA--L-GGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIPAAVLADLAKPGGRRDVLV-- 153 (211)
T ss_pred HHHH--h-CCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccCHHHhccCCCcCCceeEEE--
Confidence 9 53 3 48999998753 122355667777643 44432 32222211111111 2223332
Q ss_pred ecCChHHHHHHHHHHHHcCCeEEEcChhH
Q 023897 149 RIRDEATCSSFLRIFESEGCKMLEMSCEE 177 (275)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~G~~v~~~~~~~ 177 (275)
.++|.++.+.+.+|.+.+|++++...+-+
T Consensus 154 agDD~~Ak~~v~~L~~~iG~~~ld~G~L~ 182 (211)
T COG2085 154 AGDDAEAKAVVAELAEDIGFRPLDAGPLE 182 (211)
T ss_pred ecCcHHHHHHHHHHHHhcCcceeeccccc
Confidence 24477888999999999999998876543
No 71
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.57 E-value=4.1e-13 Score=120.40 Aligned_cols=163 Identities=18% Similarity=0.261 Sum_probs=108.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCce-----------------EecChHHHhccCCCEEEE
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGIS-----------------FFSDKRAFLEADNDVILI 73 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~-----------------~~~~~~~~~~~~aD~iil 73 (275)
+|||+|||+|.||+++|..|.++|++|++|+|++..+...+.|.. .+++. +. ...+|+||+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~D~vil 79 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AA-LATADLVLV 79 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hh-ccCCCEEEE
Confidence 479999999999999999999999999999997643333333432 23444 33 378999999
Q ss_pred ecCchhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeec-CCC----CCCCCCcCCccccceeeee
Q 023897 74 STSILSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCT-HPM----FGPESGQNGWKDFAFVYEK 147 (275)
Q Consensus 74 avp~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~-hP~----~g~~~~~~~~~g~~~~~~~ 147 (275)
|||.....++++.+ +. +.++++++++.+... ..+.+++.++.. .++.+ +|. .||........+. ..+.
T Consensus 80 ~vk~~~~~~~~~~l~~~--~~~~~iii~~~nG~~-~~~~l~~~~~~~-~~~~g~~~~~~~~~~pg~~~~~~~g~-l~~~- 153 (341)
T PRK08229 80 TVKSAATADAAAALAGH--ARPGAVVVSFQNGVR-NADVLRAALPGA-TVLAGMVPFNVISRGPGAFHQGTSGA-LAIE- 153 (341)
T ss_pred EecCcchHHHHHHHHhh--CCCCCEEEEeCCCCC-cHHHHHHhCCCC-cEEEEEEEEEEEecCCceEEecCCCc-eEec-
Confidence 99999999999998 76 788888887654222 235566666542 33332 331 1222111111222 2211
Q ss_pred eecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh
Q 023897 148 VRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS 185 (275)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~ 185 (275)
+.+..+++.++|+..|.+++..+.-.......++
T Consensus 154 ----~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~ 187 (341)
T PRK08229 154 ----ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLL 187 (341)
T ss_pred ----CCchHHHHHHHHHhcCCCceecchhHHHHHHHHH
Confidence 2245688999999999998887755555555554
No 72
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.56 E-value=2.4e-15 Score=114.92 Aligned_cols=116 Identities=22% Similarity=0.283 Sum_probs=72.1
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEE-EcCChh-hhH-HHHcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRA-TSRTDH-SQL-CHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL 84 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~-~dr~~~-~~~-a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~ 84 (275)
....+||+|||+|++|..|+++|.++||.|.+ |+|++. .+. +...+.....++.+. ..++|++|++||++.+.++.
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~-~~~aDlv~iavpDdaI~~va 85 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEI-LRDADLVFIAVPDDAIAEVA 85 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGG-GCC-SEEEE-S-CCHHHHHH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccc-cccCCEEEEEechHHHHHHH
Confidence 34678999999999999999999999999886 578773 332 333344444566664 58999999999999999999
Q ss_pred hcC-CCCCCCCCcEEEeCCCCCh-hHHHHHHhhCCCCCceeecCC
Q 023897 85 NSL-PVHCLQRRTLIADVLSVKE-YPRNVLLQVLPEEMDVLCTHP 127 (275)
Q Consensus 85 ~~l-~~~~l~~~~iv~d~~s~k~-~~~~~l~~~l~~~~~~v~~hP 127 (275)
+++ ....+.++++++.+++... .+++-+++ .++...+.||
T Consensus 86 ~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~---~Ga~~~s~HP 127 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTSGALGSDVLAPARE---RGAIVASLHP 127 (127)
T ss_dssp HHHHCC--S-TT-EEEES-SS--GGGGHHHHH---TT-EEEEEEE
T ss_pred HHHHHhccCCCCcEEEECCCCChHHhhhhHHH---CCCeEEEeCc
Confidence 999 4322578999999886543 33333333 4567778887
No 73
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.55 E-value=4e-13 Score=117.46 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=110.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhH-----------HHHcC-------------ceEecChHHHhc
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQL-----------CHRSG-------------ISFFSDKRAFLE 65 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~-----------a~~~g-------------~~~~~~~~~~~~ 65 (275)
..||+|||+|.||..+|..++.+|++|++||++++ .+. ..+.| ++.+++.++ +
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~--~ 82 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD--F 82 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH--h
Confidence 35899999999999999999999999999999985 222 12222 236777755 3
Q ss_pred cCCCEEEEecCchh-H-HHHhhcC-CCCCC-CCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897 66 ADNDVILISTSILS-L-SEVLNSL-PVHCL-QRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF 141 (275)
Q Consensus 66 ~~aD~iilavp~~~-~-~~v~~~l-~~~~l-~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~ 141 (275)
+++|+||-|+|.+. + .+++..+ .. + ++++++.+.+|... ...+........++++.|+..++... +.
T Consensus 83 ~~~d~ViEav~E~~~~K~~l~~~l~~~--~~~~~~il~snTS~~~--~~~la~~~~~~~r~~g~hf~~P~~~~-----~l 153 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKTEIFAELDKV--VTDPDAVLASNTSSIP--IMKLAAATKRPGRVLGLHFFNPVPVL-----PL 153 (286)
T ss_pred CCCCEEEEecccCHHHHHHHHHHHHHh--hCCCCcEEEECCCCCC--HHHHHhhcCCCccEEEEecCCCcccC-----ce
Confidence 89999999999974 2 4566666 54 6 78999988776543 34455555555689999998766542 22
Q ss_pred ceeeeeeecCChHHHHHHHHHHH-HcCCeEEEcC
Q 023897 142 AFVYEKVRIRDEATCSSFLRIFE-SEGCKMLEMS 174 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~-~~G~~v~~~~ 174 (275)
.- +++...++++.++++..++. .+|..++.+.
T Consensus 154 vE-lv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~ 186 (286)
T PRK07819 154 VE-LVPTLVTSEATVARAEEFASDVLGKQVVRAQ 186 (286)
T ss_pred EE-EeCCCCCCHHHHHHHHHHHHHhCCCCceEec
Confidence 22 33344568899999999988 5998888773
No 74
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.55 E-value=1.6e-13 Score=122.38 Aligned_cols=203 Identities=19% Similarity=0.287 Sum_probs=127.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-------c-------CceEecChHHHhccCCCEEEEecC
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-------S-------GISFFSDKRAFLEADNDVILISTS 76 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-------~-------g~~~~~~~~~~~~~~aD~iilavp 76 (275)
|||+|||+|.||+++|..|.++|++|++|+|+++ .+...+ . ++..+++..+.+...+|+||+|||
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 6899999999999999999999999999999874 221111 0 123455666642257899999999
Q ss_pred chhHHHHhhcC-C-CCCCCCCcEEEeC-CCCCh----hHHHHHHhhCCCCCceeecCC---CCCCCCCcCCccccceeee
Q 023897 77 ILSLSEVLNSL-P-VHCLQRRTLIADV-LSVKE----YPRNVLLQVLPEEMDVLCTHP---MFGPESGQNGWKDFAFVYE 146 (275)
Q Consensus 77 ~~~~~~v~~~l-~-~~~l~~~~iv~d~-~s~k~----~~~~~l~~~l~~~~~~v~~hP---~~g~~~~~~~~~g~~~~~~ 146 (275)
++.+.++++++ + . +.+++.++.+ .+... ...+.+.+.++ .|| +.||....+...+.+..+.
T Consensus 81 s~~~~~~l~~l~~~~--l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~-------~~~~~~~~Gp~~a~~~~~~~~~~~~ 151 (326)
T PRK14620 81 TQQLRTICQQLQDCH--LKKNTPILICSKGIEKSSLKFPSEIVNEILP-------NNPIAILSGPSFAKEIAEKLPCSIV 151 (326)
T ss_pred HHHHHHHHHHHHHhc--CCCCCEEEEEEcCeeCCCCccHHHHHHHHcC-------CCceEeecCCcHHHHHHcCCCcEEE
Confidence 99999999999 7 6 7766644432 22211 11244454443 233 2366543223333443322
Q ss_pred eeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHh-hhhHHHHHHHHhh---cccc--c-CcccCcchHHHHHHhh
Q 023897 147 KVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKS-QFLTHTIGRVLSE---LEIQ--S-TSMNTKGFETLIRLKE 219 (275)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~-~~lp~~~a~~l~~---~~~~--~-~~l~~~~~~~~~rl~~ 219 (275)
. .+.+.+..+.+.++|+..+++++..+ |...... ..+.++++.++.- .+.. . ..+...+++++.+++.
T Consensus 152 ~-~~~~~~~~~~l~~~l~~~~~~~~~~~----Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~ 226 (326)
T PRK14620 152 L-AGQNETLGSSLISKLSNENLKIIYSQ----DIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYS 226 (326)
T ss_pred E-ecCCHHHHHHHHHHHCCCCeEEEecC----cchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 2 23355566788888988888887765 4333322 3455555443331 1222 1 3577888999999998
Q ss_pred cCCCC--ChhhH
Q 023897 220 SSVND--SFDLF 229 (275)
Q Consensus 220 ~~~~~--~p~~~ 229 (275)
.. +. +|+.+
T Consensus 227 a~-G~~~~~~~~ 237 (326)
T PRK14620 227 AK-NGSIDLNTL 237 (326)
T ss_pred Hh-CCCCCcchh
Confidence 75 43 57766
No 75
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.54 E-value=2.9e-13 Score=126.98 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=113.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHH-----------HHcC-------------ceEecChHHHh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLC-----------HRSG-------------ISFFSDKRAFL 64 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a-----------~~~g-------------~~~~~~~~~~~ 64 (275)
...+|+|||+|.||..||..|+.+|++|++||++++ .+.+ .+.| ++.+++++++
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~- 84 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL- 84 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-
Confidence 456899999999999999999999999999999985 3321 2344 4677788763
Q ss_pred ccCCCEEEEecCchh-H-HHHhhcC-CCCCCCCCcEEE-eCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccc
Q 023897 65 EADNDVILISTSILS-L-SEVLNSL-PVHCLQRRTLIA-DVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKD 140 (275)
Q Consensus 65 ~~~aD~iilavp~~~-~-~~v~~~l-~~~~l~~~~iv~-d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g 140 (275)
.+||+||.|+|.+. + ..++.++ .. +++++++. ++++... ..+.+.+....++++.|...++...
T Consensus 85 -~~aDlViEav~E~~~vK~~vf~~l~~~--~~~~ailasntStl~i---~~la~~~~~p~r~~G~hff~Pa~v~------ 152 (507)
T PRK08268 85 -ADCDLVVEAIVERLDVKQALFAQLEAI--VSPDCILATNTSSLSI---TAIAAALKHPERVAGLHFFNPVPLM------ 152 (507)
T ss_pred -CCCCEEEEcCcccHHHHHHHHHHHHhh--CCCCcEEEECCCCCCH---HHHHhhcCCcccEEEEeecCCcccC------
Confidence 69999999999974 3 3455666 55 67888884 6665543 3556555555679999987655432
Q ss_pred cceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897 141 FAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS 174 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~ 174 (275)
..+.++++..++++.++.+.++++.+|..++++.
T Consensus 153 ~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~ 186 (507)
T PRK08268 153 KLVEVVSGLATDPAVADALYALARAWGKTPVRAK 186 (507)
T ss_pred eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEec
Confidence 2355555555688899999999999999988875
No 76
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.54 E-value=2.6e-14 Score=114.12 Aligned_cols=129 Identities=22% Similarity=0.298 Sum_probs=90.0
Q ss_pred eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH--------------cCceEecChHHHhccCCCEEEEecCc
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR--------------SGISFFSDKRAFLEADNDVILISTSI 77 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~--------------~g~~~~~~~~~~~~~~aD~iilavp~ 77 (275)
||+|||+|+||.++|..|+++|++|++|+|+++ .+...+ ..+.++++++++ ++++|+|+++||.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a-~~~ad~IiiavPs 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEA-LEDADIIIIAVPS 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHH-HTT-SEEEE-S-G
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHH-hCcccEEEecccH
Confidence 799999999999999999999999999999974 221111 123578889886 5899999999999
Q ss_pred hhHHHHhhcC-CCCCCCCCcEEEeCC-CC----ChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeee
Q 023897 78 LSLSEVLNSL-PVHCLQRRTLIADVL-SV----KEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKV 148 (275)
Q Consensus 78 ~~~~~v~~~l-~~~~l~~~~iv~d~~-s~----k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~ 148 (275)
+..+++++++ ++ ++++++++.+. +. ...+.+.+++.++... +. -+.||..+.|...+.++.++-.
T Consensus 80 ~~~~~~~~~l~~~--l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~-~~---~lsGP~~A~Ei~~~~pt~~~~a 150 (157)
T PF01210_consen 80 QAHREVLEQLAPY--LKKGQIIISATKGFEPGTLLLLSEVIEEILPIPR-IA---VLSGPSFAEEIAEGKPTAVVIA 150 (157)
T ss_dssp GGHHHHHHHHTTT--SHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCG-EE---EEESS--HHHHHTT--EEEEEE
T ss_pred HHHHHHHHHHhhc--cCCCCEEEEecCCcccCCCccHHHHHHHHhhhcc-eE---EeeCccHHHHHHcCCCeEEEEE
Confidence 9999999999 88 88888887654 11 1235566777766432 22 2468887777777877766643
No 77
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.51 E-value=3.7e-14 Score=103.66 Aligned_cols=87 Identities=30% Similarity=0.533 Sum_probs=71.5
Q ss_pred eEEEEcCChHHHHHHHHHHHCC---CeEEE-EcCChhh--hHHHHcCceEec-ChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQG---HILRA-TSRTDHS--QLCHRSGISFFS-DKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g---~~V~~-~dr~~~~--~~a~~~g~~~~~-~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
||+|||+|+||.++++.|.+.| ++|.+ ++|+++. +.+.+.++.... +..++ ++++|+||+|||++.+.+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~advvilav~p~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEA-AQEADVVILAVKPQQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHH-HHHTSEEEE-S-GGGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHh-hccCCEEEEEECHHHHHHHHH
Confidence 7999999999999999999999 89995 4999963 456777876665 77775 589999999999999999999
Q ss_pred cCCCCCCCCCcEEEeCC
Q 023897 86 SLPVHCLQRRTLIADVL 102 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~ 102 (275)
+++. ..++++++|+.
T Consensus 80 ~i~~--~~~~~~vis~~ 94 (96)
T PF03807_consen 80 EIPH--LLKGKLVISIA 94 (96)
T ss_dssp HHHH--HHTTSEEEEES
T ss_pred HHhh--ccCCCEEEEeC
Confidence 9833 56788998875
No 78
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.49 E-value=1.3e-12 Score=122.39 Aligned_cols=152 Identities=14% Similarity=0.078 Sum_probs=111.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHH-----------HHcC-------------ceEecChHHHhc
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLC-----------HRSG-------------ISFFSDKRAFLE 65 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a-----------~~~g-------------~~~~~~~~~~~~ 65 (275)
..||+|||+|.||..||..|+++|++|++||++++ .+.+ .+.| ++.+++++++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l-- 82 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHAL-- 82 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHh--
Confidence 46899999999999999999999999999999985 3221 2233 3567788763
Q ss_pred cCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccc
Q 023897 66 ADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFA 142 (275)
Q Consensus 66 ~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~ 142 (275)
.+||+||.|+|.+. -..++.++ .. +++++++...+|.-. + ..+.+.+....++++.|...++... ..
T Consensus 83 ~~aDlVIEav~E~~~vK~~vf~~l~~~--~~~~~IlasnTStl~-i-~~iA~~~~~p~r~~G~HFf~Papv~------~L 152 (503)
T TIGR02279 83 ADAGLVIEAIVENLEVKKALFAQLEEL--CPADTIIASNTSSLS-I-TAIAAGLARPERVAGLHFFNPAPVM------AL 152 (503)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhh--CCCCeEEEECCCCCC-H-HHHHHhcCcccceEEEeccCccccC------ce
Confidence 69999999999853 34566667 55 778888764444332 2 3455555555689999987655532 23
Q ss_pred eeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897 143 FVYEKVRIRDEATCSSFLRIFESEGCKMLEMS 174 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~ 174 (275)
..++++..++++.++.+.++++.+|..++++.
T Consensus 153 vEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~ 184 (503)
T TIGR02279 153 VEVVSGLATAAEVAEQLYETALAWGKQPVHCH 184 (503)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeC
Confidence 55555556688999999999999999988875
No 79
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.48 E-value=2.6e-12 Score=118.08 Aligned_cols=167 Identities=14% Similarity=0.107 Sum_probs=104.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCc-----------------eEecChHHHhccCCCEEEEe
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGI-----------------SFFSDKRAFLEADNDVILIS 74 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~-----------------~~~~~~~~~~~~~aD~iila 74 (275)
|||+|||+|.||..+|..|++ ||+|++||++++.....+.|. ..+++.+ + ++++|++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~-~-~~~advvii~ 83 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIE-K-IKECNFYIIT 83 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHH-H-HcCCCEEEEE
Confidence 899999999999999999887 599999999986432222333 3444444 3 4899999999
Q ss_pred cCch----------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHH-HhhCCC--C-----CceeecCCCCCCCCC-
Q 023897 75 TSIL----------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVL-LQVLPE--E-----MDVLCTHPMFGPESG- 134 (275)
Q Consensus 75 vp~~----------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l-~~~l~~--~-----~~~v~~hP~~g~~~~- 134 (275)
||.. .+....+.+ +. +++|+++++.+++.....+.+ ...+.. + ..+++..|.+..+-.
T Consensus 84 Vptp~~~~~~~dl~~v~~a~~~i~~~--l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a 161 (425)
T PRK15182 84 VPTPINTYKQPDLTPLIKASETVGTV--LNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDK 161 (425)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHh--cCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcc
Confidence 9975 345555677 66 888999999888876554432 222211 1 123444454333211
Q ss_pred cCCccccceeeeeeecCChHHHHHHHHHHHHcC-CeEEEcChhHHHHHHHHhh
Q 023897 135 QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEG-CKMLEMSCEEHDKVAAKSQ 186 (275)
Q Consensus 135 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G-~~v~~~~~~~hD~~~a~~~ 186 (275)
...+...+.++.+ .+++..+.++++++.+. ..++.++.-+-..++.++.
T Consensus 162 ~~~~~~~~riv~G---~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~ 211 (425)
T PRK15182 162 KHRLTNIKKITSG---STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIE 211 (425)
T ss_pred cccccCCCeEEEC---CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHH
Confidence 1112233344442 25667788999999875 2244444344455666554
No 80
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.42 E-value=4.1e-12 Score=117.33 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-----cCceEecChHHHhcc---CCCEEEEecCch-hHHHHhhcC-CCC
Q 023897 22 FGQFLAKTMIKQGHILRATSRTDH-SQLCHR-----SGISFFSDKRAFLEA---DNDVILISTSIL-SLSEVLNSL-PVH 90 (275)
Q Consensus 22 mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-----~g~~~~~~~~~~~~~---~aD~iilavp~~-~~~~v~~~l-~~~ 90 (275)
||+.||+.|.++||+|.+|||+++ .+...+ .|+....++++++ + .+|+||+++|.. .+.++++.+ +.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v-~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~- 78 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFV-ASLEKPRKILLMVKAGAPVDAVIEQLLPL- 78 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHH-hhCCCCCEEEEECCCchHHHHHHHHHHhc-
Confidence 899999999999999999999985 333333 2477888999863 4 489999999986 567888888 87
Q ss_pred CCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCe
Q 023897 91 CLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCK 169 (275)
Q Consensus 91 ~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~ 169 (275)
+.+|.+++|.+++.........+.+ ..+..|++ .|++|.+.+. ..|. .++.++ +++.+++++.+|+.++.+
T Consensus 79 -l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvd-apVSGG~~gA--~~G~-siM~GG---~~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 79 -LEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIG-MGVSGGEEGA--LHGP-SIMPGG---QKEAYELVAPILEKIAAK 150 (459)
T ss_pred -CCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEe-cCCCCCHHHH--hcCC-EEEEeC---CHHHHHHHHHHHHHHhhh
Confidence 8999999999876655444444443 45678887 5888876432 2454 666543 788999999999999988
Q ss_pred E-------EEcChhHHHHHHHHhhhhH
Q 023897 170 M-------LEMSCEEHDKVAAKSQFLT 189 (275)
Q Consensus 170 v-------~~~~~~~hD~~~a~~~~lp 189 (275)
+ .++.+.....++.+++++-
T Consensus 151 ~~~g~~c~~~vG~~GaGh~vKmvhN~i 177 (459)
T PRK09287 151 VEDGEPCVTYIGPDGAGHYVKMVHNGI 177 (459)
T ss_pred hcCCCCceeeeCCCCHHHHHHHHHHHH
Confidence 6 7888777677777775443
No 81
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.42 E-value=4.7e-11 Score=105.90 Aligned_cols=231 Identities=14% Similarity=0.113 Sum_probs=133.1
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCce--------------EecChHHHhccCCCEEEE
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGIS--------------FFSDKRAFLEADNDVILI 73 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~--------------~~~~~~~~~~~~aD~iil 73 (275)
.+..|||+|||+|.||+.+|..|+++|++|+++.|++. +...+.|.. ..++.++ ...+|+||+
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~vil 78 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAED--MPPCDWVLV 78 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhh--cCCCCEEEE
Confidence 34568999999999999999999999999999999863 212222321 2233333 267899999
Q ss_pred ecCchhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCC-----ccccceeeee
Q 023897 74 STSILSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNG-----WKDFAFVYEK 147 (275)
Q Consensus 74 avp~~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~-----~~g~~~~~~~ 147 (275)
|||...+.++++.+ +. +.++++++...+--. ..+.+.+.++.. +++.+-...|....+++ ..|. ..+..
T Consensus 79 avK~~~~~~~~~~l~~~--~~~~~~iv~lqNG~~-~~e~l~~~~~~~-~v~~g~~~~~a~~~~pg~v~~~~~g~-~~iG~ 153 (313)
T PRK06249 79 GLKTTANALLAPLIPQV--AAPDAKVLLLQNGLG-VEEQLREILPAE-HLLGGLCFICSNRVGPGVIHHLAYGR-VNLGY 153 (313)
T ss_pred EecCCChHhHHHHHhhh--cCCCCEEEEecCCCC-cHHHHHHHCCCC-cEEEEeeeEeEecCCCeEEEECCCCc-EEEec
Confidence 99999999999988 76 777776665543222 345667777643 34433222222111100 0122 22222
Q ss_pred eecCC-----hHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhh-----hHHHH----------------HHHHhh---
Q 023897 148 VRIRD-----EATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQF-----LTHTI----------------GRVLSE--- 198 (275)
Q Consensus 148 ~~~~~-----~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~-----lp~~~----------------a~~l~~--- 198 (275)
..+.+ .+..+.+.++|+..|..+...+.-++.....++-. +..++ ...+.+
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~ 233 (313)
T PRK06249 154 HSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVI 233 (313)
T ss_pred CCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHH
Confidence 22212 34566788899999988766654455554443321 11111 001110
Q ss_pred -----cccccCcccCcchHHHHHHhhcCCCCChhhHHHHHHHCHHHHHHHHHHHHH
Q 023897 199 -----LEIQSTSMNTKGFETLIRLKESSVNDSFDLFSGLYIHNRFAKQELLDLEAA 249 (275)
Q Consensus 199 -----~~~~~~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~~~N~~~~~~l~~~~~~ 249 (275)
.|.+ +...-++...+++.......+.||+|+...-++.++.+.-+.-.
T Consensus 234 ~va~a~Gi~---~~~~~~~~~~~~~~~~~~~~sSM~qD~~~gr~tEid~i~G~vv~ 286 (313)
T PRK06249 234 QGAAACGHT---LPEGYADHMLAVTERMPDYRPSMYHDFEEGRPLELEAIYANPLA 286 (313)
T ss_pred HHHHhcCCC---CChhHHHHHHHHhhcCCCCCChHHHHHHCCCcccHHHHhhHHHH
Confidence 1211 22223455566666654456899999986555556666555443
No 82
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.41 E-value=2.3e-11 Score=107.34 Aligned_cols=155 Identities=12% Similarity=0.222 Sum_probs=96.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCce-------------EecChHHHhccCCCEEEEecCch
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGIS-------------FFSDKRAFLEADNDVILISTSIL 78 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~-------------~~~~~~~~~~~~aD~iilavp~~ 78 (275)
|||+|||+|.||+.+|..|+++|++|++++|.+..+...+.|+. ..++.++. ...+|+||+|||..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEEL-TGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHc-cCCCCEEEEEeccc
Confidence 68999999999999999999999999999993233333333432 23345553 37899999999999
Q ss_pred hHHHHhhcC-CCCCCCCCcEEEeCC-CCChhHHHHHHhhCCCCCceeecCC-----CCCCCCCcCCccccc-eeeeeeec
Q 023897 79 SLSEVLNSL-PVHCLQRRTLIADVL-SVKEYPRNVLLQVLPEEMDVLCTHP-----MFGPESGQNGWKDFA-FVYEKVRI 150 (275)
Q Consensus 79 ~~~~v~~~l-~~~~l~~~~iv~d~~-s~k~~~~~~l~~~l~~~~~~v~~hP-----~~g~~~~~~~~~g~~-~~~~~~~~ 150 (275)
.+.++++.+ +. +.++++++.+. ++ ...+.+.+.++.. +++++-. ..++..-. ..+.. +.+.....
T Consensus 80 ~~~~~~~~l~~~--~~~~~~ii~~~nG~--~~~~~l~~~~~~~-~v~~g~~~~~~~~~~~g~v~--~~~~~~~~iG~~~~ 152 (305)
T PRK12921 80 QLDAAIPDLKPL--VGEDTVIIPLQNGI--GQLEQLEPYFGRE-RVLGGVVFISAQLNGDGVVV--QRADHRLTFGEIPG 152 (305)
T ss_pred CHHHHHHHHHhh--cCCCCEEEEeeCCC--ChHHHHHHhCCcc-cEEEEEEEEEEEECCCeEEE--EcCCCcEEEcCCCC
Confidence 999999999 76 77777776543 32 2235566666532 2332211 11221100 01111 22211112
Q ss_pred CChHHHHHHHHHHHHcCCeEEEcC
Q 023897 151 RDEATCSSFLRIFESEGCKMLEMS 174 (275)
Q Consensus 151 ~~~~~~~~~~~l~~~~G~~v~~~~ 174 (275)
...+..+.+.++|...|..+...+
T Consensus 153 ~~~~~~~~l~~~l~~~g~~~~~~~ 176 (305)
T PRK12921 153 QRSERTRAVRDALAGARLEVVLSE 176 (305)
T ss_pred CcCHHHHHHHHHHHhCCCCceecH
Confidence 224466788889999997765543
No 83
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=8e-12 Score=103.10 Aligned_cols=166 Identities=14% Similarity=0.166 Sum_probs=117.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHh--ccCCCEEEEecCch-hHHHHhhcC
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFL--EADNDVILISTSIL-SLSEVLNSL 87 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~--~~~aD~iilavp~~-~~~~v~~~l 87 (275)
|+|+.||+|+||..++++|.+.||+|++||+|+. .+.+...|++..+++++.+ +...-.|-+.||.. .+.++++++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l 80 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL 80 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence 6899999999999999999999999999999995 5777788888888877653 24568899999987 778999999
Q ss_pred -CCCCCCCCcEEEeCCCCCh-hHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHHHHHHHH
Q 023897 88 -PVHCLQRRTLIADVLSVKE-YPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFES 165 (275)
Q Consensus 88 -~~~~l~~~~iv~d~~s~k~-~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (275)
+. +.+|.+|+|-+++.- +......+....+..|+.+-.--|.. +. ..|. .++++ .+++++++++.+|+.
T Consensus 81 a~~--L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~-G~--~~G~-~lMiG---G~~~a~~~~~pif~~ 151 (300)
T COG1023 81 APL--LSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVW-GA--ERGY-CLMIG---GDEEAVERLEPIFKA 151 (300)
T ss_pred Hhh--cCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCch-hh--hcCc-eEEec---CcHHHHHHHHHHHHh
Confidence 88 999999999876543 22233333334567887653222221 11 1233 34443 278899999999998
Q ss_pred cCC---eEEEcChhHHHHHHHHhh
Q 023897 166 EGC---KMLEMSCEEHDKVAAKSQ 186 (275)
Q Consensus 166 ~G~---~v~~~~~~~hD~~~a~~~ 186 (275)
+-. -..++.|.....+...+.
T Consensus 152 lA~ge~Gyl~~Gp~GsGHfvKMVH 175 (300)
T COG1023 152 LAPGEDGYLYCGPSGSGHFVKMVH 175 (300)
T ss_pred hCcCcCccccccCCCcchhHHHHh
Confidence 754 134555554444445544
No 84
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.40 E-value=1.6e-11 Score=108.27 Aligned_cols=154 Identities=18% Similarity=0.239 Sum_probs=95.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCce-----------EecChHHHhccCCCEEEEecCchh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGIS-----------FFSDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~-----------~~~~~~~~~~~~aD~iilavp~~~ 79 (275)
|||+|||+|.||+.+|..|.+.|++|++++|+++ .+...+.|.. ..++..+ + ..+|+||+|||...
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-~~~d~vila~k~~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAE-L-GPQDLVILAVKAYQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhH-c-CCCCEEEEeccccc
Confidence 6899999999999999999999999999999764 3333333442 2344555 3 78999999999999
Q ss_pred HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCC-----CCCCCCcCCccccceeeeeeecCCh
Q 023897 80 LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPM-----FGPESGQNGWKDFAFVYEKVRIRDE 153 (275)
Q Consensus 80 ~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~-----~g~~~~~~~~~g~~~~~~~~~~~~~ 153 (275)
+.++++.+ +. +.++++++.+.+-.. ..+.+.+.++.. .++.+-.. .+|........+. ..+..... ..
T Consensus 79 ~~~~~~~l~~~--l~~~~~iv~~~nG~~-~~~~l~~~~~~~-~i~~~~~~~~~~~~~p~~v~~~~~g~-~~ig~~~~-~~ 152 (304)
T PRK06522 79 LPAALPSLAPL--LGPDTPVLFLQNGVG-HLEELAAYIGPE-RVLGGVVTHAAELEGPGVVRHTGGGR-LKIGEPDG-ES 152 (304)
T ss_pred HHHHHHHHhhh--cCCCCEEEEecCCCC-cHHHHHHhcCcc-cEEEEEEEEeeEecCCCEEEEcCCCC-EEEeCCCC-Cc
Confidence 99999999 76 777776665443222 234556655432 23321111 1221100001122 22221111 22
Q ss_pred HHHHHHHHHHHHcCCeEEEc
Q 023897 154 ATCSSFLRIFESEGCKMLEM 173 (275)
Q Consensus 154 ~~~~~~~~l~~~~G~~v~~~ 173 (275)
+..+.+.++|...|..+...
T Consensus 153 ~~~~~l~~~l~~~~~~~~~~ 172 (304)
T PRK06522 153 AAAEALADLLNAAGLDVEWS 172 (304)
T ss_pred HHHHHHHHHHHhcCCCCCCC
Confidence 34677888999988775554
No 85
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.39 E-value=2.5e-11 Score=110.28 Aligned_cols=165 Identities=13% Similarity=0.067 Sum_probs=104.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHH----------------cCc--eEecChHHHhccCCCEEE
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHR----------------SGI--SFFSDKRAFLEADNDVIL 72 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~----------------~g~--~~~~~~~~~~~~~aD~ii 72 (275)
|||+|||+|.||..+|..|+. ||+|++||++++. +...+ .+. ..+.+..++ +.++|+||
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~-~~~ad~vi 78 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA-YRDADYVI 78 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh-hcCCCEEE
Confidence 689999999999999988875 8999999999853 32221 122 233445564 48999999
Q ss_pred EecCch-----------hHHHHhhcCCCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCC-CCcCCccc
Q 023897 73 ISTSIL-----------SLSEVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPE-SGQNGWKD 140 (275)
Q Consensus 73 lavp~~-----------~~~~v~~~l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~-~~~~~~~g 140 (275)
+|||.. .+.++++.+.. +++++++++.+++.....+.+.+.+.. ..+...|.+-.+ ..-..+..
T Consensus 79 i~Vpt~~~~k~~~~dl~~v~~v~~~i~~--~~~g~lVV~~STv~pgtt~~l~~~~~~--~~v~~~PE~l~~G~a~~d~~~ 154 (388)
T PRK15057 79 IATPTDYDPKTNYFNTSSVESVIKDVVE--INPYAVMVIKSTVPVGFTAAMHKKYRT--ENIIFSPEFLREGKALYDNLH 154 (388)
T ss_pred EeCCCCCccCCCCcChHHHHHHHHHHHh--cCCCCEEEEeeecCCchHHHHHHHhhc--CcEEECcccccCCcccccccC
Confidence 999965 45677777732 578899999998887777777765432 123333432221 11122334
Q ss_pred cceeeeeeecCChHHHHHHHHHHHH--cCCeEE--EcChhHHHHHHHHhh
Q 023897 141 FAFVYEKVRIRDEATCSSFLRIFES--EGCKML--EMSCEEHDKVAAKSQ 186 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~--~G~~v~--~~~~~~hD~~~a~~~ 186 (275)
.+.++.+. +++..+.+.+++.. ++..+. .++. +-..++.++.
T Consensus 155 p~rvv~G~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~AE~~Kl~~ 200 (388)
T PRK15057 155 PSRIVIGE---RSERAERFAALLQEGAIKQNIPTLFTDS-TEAEAIKLFA 200 (388)
T ss_pred CCEEEEEc---CcHHHHHHHHHHHhhhhcCCCceeeCCH-HHHHHHHHHH
Confidence 44666543 34566777777754 454333 4444 3344555554
No 86
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.37 E-value=1.9e-11 Score=106.63 Aligned_cols=151 Identities=15% Similarity=0.091 Sum_probs=109.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHH-----------HHcC-------------ceEecChHHHh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLC-----------HRSG-------------ISFFSDKRAFL 64 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a-----------~~~g-------------~~~~~~~~~~~ 64 (275)
..+||+|||+|.||+.+|..++..|++|+++|++++. ..+ .+.| ++.+++...
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~-- 79 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA-- 79 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH--
Confidence 4579999999999999999999988999999999642 111 1112 234455554
Q ss_pred ccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897 65 EADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF 141 (275)
Q Consensus 65 ~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~ 141 (275)
+++||+|+-+++.+. -.+++.++ .. .++++|+.+.+|.-. ...+.+.+...-+|++.|+..++..- .
T Consensus 80 l~~~DlVIEAv~E~levK~~vf~~l~~~--~~~~aIlASNTSsl~--it~ia~~~~rper~iG~HFfNP~~~m------~ 149 (307)
T COG1250 80 LKDADLVIEAVVEDLELKKQVFAELEAL--AKPDAILASNTSSLS--ITELAEALKRPERFIGLHFFNPVPLM------P 149 (307)
T ss_pred hccCCEEEEeccccHHHHHHHHHHHHhh--cCCCcEEeeccCCCC--HHHHHHHhCCchhEEEEeccCCCCcc------e
Confidence 389999999999974 35788888 66 788999987665433 34555555555689999997776531 1
Q ss_pred ceeeeeeecCChHHHHHHHHHHHHcCCeEEE
Q 023897 142 AFVYEKVRIRDEATCSSFLRIFESEGCKMLE 172 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~ 172 (275)
..=+.++..++++.++.+.++.+.+|..+++
T Consensus 150 LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv 180 (307)
T COG1250 150 LVEVIRGEKTSDETVERVVEFAKKIGKTPVV 180 (307)
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCCCEe
Confidence 2333444556888999999999999965533
No 87
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.37 E-value=3.5e-11 Score=117.40 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=114.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHH-----------HHc-------------CceEecChHHHhc
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLC-----------HRS-------------GISFFSDKRAFLE 65 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a-----------~~~-------------g~~~~~~~~~~~~ 65 (275)
..||+|||+|.||..+|..++.+|++|+++|++++ .+.+ .+. .++.+++.++ +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~- 390 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG-F- 390 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-h-
Confidence 46899999999999999999999999999999974 2211 111 2356677765 3
Q ss_pred cCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccc
Q 023897 66 ADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFA 142 (275)
Q Consensus 66 ~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~ 142 (275)
++||+||-|+|.+. -.+++.++ +. +++++++...+|.- ....+.+.+....+|++.|+..++..- ..
T Consensus 391 ~~aDlViEav~E~l~~K~~vf~~l~~~--~~~~~ilasNTSsl--~i~~la~~~~~p~r~~g~Hff~P~~~~------~l 460 (715)
T PRK11730 391 ERVDVVVEAVVENPKVKAAVLAEVEQK--VREDTILASNTSTI--SISLLAKALKRPENFCGMHFFNPVHRM------PL 460 (715)
T ss_pred cCCCEEEecccCcHHHHHHHHHHHHhh--CCCCcEEEEcCCCC--CHHHHHhhcCCCccEEEEecCCccccc------ce
Confidence 89999999999964 35788888 76 88999998766543 345566666656789999987666532 12
Q ss_pred eeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897 143 FVYEKVRIRDEATCSSFLRIFESEGCKMLEMS 174 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~ 174 (275)
+=++++..++++.++.+.++++.+|..++++.
T Consensus 461 VEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~ 492 (715)
T PRK11730 461 VEVIRGEKTSDETIATVVAYASKMGKTPIVVN 492 (715)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCceEEec
Confidence 33344455688899999999999999988873
No 88
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.36 E-value=4.8e-11 Score=116.18 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=114.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHH-HCCCeEEEEcCChh-hhHH-----------HH-------------cCceEecChHHH
Q 023897 10 STLKIGIIGFGPFGQFLAKTMI-KQGHILRATSRTDH-SQLC-----------HR-------------SGISFFSDKRAF 63 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~-~~g~~V~~~dr~~~-~~~a-----------~~-------------~g~~~~~~~~~~ 63 (275)
...||+|||+|.||..+|..++ .+|++|+++|++++ ...+ .+ ..++.+++.+.
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 381 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG- 381 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH-
Confidence 3468999999999999999998 58999999999974 2211 11 12356677765
Q ss_pred hccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccc
Q 023897 64 LEADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKD 140 (275)
Q Consensus 64 ~~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g 140 (275)
+++||+||-|+|.+. -.+++.++ .. +++++|+...+|.- ....+.+.+....++++.|+..++...
T Consensus 382 -~~~adlViEav~E~l~~K~~v~~~l~~~--~~~~~ilasnTS~l--~i~~la~~~~~p~r~~g~HffnP~~~~------ 450 (699)
T TIGR02440 382 -FKDVDIVIEAVFEDLALKHQMVKDIEQE--CAAHTIFASNTSSL--PIGQIAAAASRPENVIGLHYFSPVEKM------ 450 (699)
T ss_pred -hccCCEEEEeccccHHHHHHHHHHHHhh--CCCCcEEEeCCCCC--CHHHHHHhcCCcccEEEEecCCccccC------
Confidence 389999999999974 35788888 76 88999998766543 345566666656789999998776542
Q ss_pred cceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897 141 FAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS 174 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~ 174 (275)
..+-++++..++++.++.+.++++.+|..++++.
T Consensus 451 ~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~ 484 (699)
T TIGR02440 451 PLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVA 484 (699)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 2233444556688999999999999999998884
No 89
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.35 E-value=2.4e-12 Score=105.31 Aligned_cols=96 Identities=22% Similarity=0.310 Sum_probs=67.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHc---------------------CceEecChHHHhccCCCE
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRS---------------------GISFFSDKRAFLEADNDV 70 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~---------------------g~~~~~~~~~~~~~~aD~ 70 (275)
|||+|||+|.+|..+|..|+++||+|+++|.+++.....+. ....+++.+++ +.++|+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~a-i~~adv 79 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEA-IKDADV 79 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHH-HHH-SE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhh-hhccce
Confidence 79999999999999999999999999999999853222221 22566777775 489999
Q ss_pred EEEecCch----------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHH
Q 023897 71 ILISTSIL----------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRN 110 (275)
Q Consensus 71 iilavp~~----------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~ 110 (275)
+|+|||.. .+.++++.+ +. ++++++++--+++.....+
T Consensus 80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~--l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 80 VFICVPTPSDEDGSPDLSYVESAIESIAPV--LRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp EEE----EBETTTSBETHHHHHHHHHHHHH--HCSCEEEEESSSSSTTHHH
T ss_pred EEEecCCCccccCCccHHHHHHHHHHHHHH--HhhcceEEEccEEEEeeeh
Confidence 99999863 467888888 66 7889998888877766655
No 90
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.35 E-value=5.9e-11 Score=115.67 Aligned_cols=153 Identities=12% Similarity=0.086 Sum_probs=115.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHH-----------HHc-------------CceEecChHHHh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLC-----------HRS-------------GISFFSDKRAFL 64 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a-----------~~~-------------g~~~~~~~~~~~ 64 (275)
...+|+|||+|.||..+|..++.+|++|+++|++++ .+.+ .+. .++.+++.+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 389 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAG-- 389 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH--
Confidence 446899999999999999999999999999999974 2211 111 2355667755
Q ss_pred ccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897 65 EADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF 141 (275)
Q Consensus 65 ~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~ 141 (275)
+++||+||-|||.+. -.+++.++ +. +++++|+...+|.-. ...+.+.++...+|++.|+..++..- .
T Consensus 390 ~~~aDlViEav~E~l~~K~~vf~~l~~~--~~~~~ilasnTS~l~--i~~ia~~~~~p~r~ig~Hff~P~~~~------~ 459 (714)
T TIGR02437 390 FDNVDIVVEAVVENPKVKAAVLAEVEQH--VREDAILASNTSTIS--ISLLAKALKRPENFCGMHFFNPVHRM------P 459 (714)
T ss_pred hcCCCEEEEcCcccHHHHHHHHHHHHhh--CCCCcEEEECCCCCC--HHHHHhhcCCcccEEEEecCCCcccC------c
Confidence 389999999999974 35888888 76 889999987666433 45566666666789999997666532 1
Q ss_pred ceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897 142 AFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS 174 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~ 174 (275)
.+=++++..++++.++.+.++++.+|..++++.
T Consensus 460 lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~ 492 (714)
T TIGR02437 460 LVEVIRGEKSSDETIATVVAYASKMGKTPIVVN 492 (714)
T ss_pred eEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 233344555688999999999999999988874
No 91
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=5.7e-11 Score=105.27 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=111.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHc--------------------C-ceEecChHHHhccCCCE
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRS--------------------G-ISFFSDKRAFLEADNDV 70 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~--------------------g-~~~~~~~~~~~~~~aD~ 70 (275)
|||+|||+|.+|...+.+|++.||+|+++|.+++.....+. | ...+++.+++ ++++|+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a-~~~adv 79 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEA-VKDADV 79 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHH-HhcCCE
Confidence 79999999999999999999999999999999853222211 1 4678888886 489999
Q ss_pred EEEecCch----------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCC---c-eeecCCCCCCCCC-
Q 023897 71 ILISTSIL----------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEM---D-VLCTHPMFGPESG- 134 (275)
Q Consensus 71 iilavp~~----------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~---~-~v~~hP~~g~~~~- 134 (275)
+|+|||.+ .+..+++++ +. ++..++++.-+++.....+.+++.+.... . -|...|-|-.|-.
T Consensus 80 ~fIavgTP~~~dg~aDl~~V~ava~~i~~~--~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~A 157 (414)
T COG1004 80 VFIAVGTPPDEDGSADLSYVEAVAKDIGEI--LDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSA 157 (414)
T ss_pred EEEEcCCCCCCCCCccHHHHHHHHHHHHhh--cCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcch
Confidence 99999873 467788888 66 66668888878777666666555432111 1 1455676655521
Q ss_pred cCCccccceeeeeeecCChHHHHHHHHHHHHc---CCeEEEcChhHHH
Q 023897 135 QNGWKDFAFVYEKVRIRDEATCSSFLRIFESE---GCKMLEMSCEEHD 179 (275)
Q Consensus 135 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~---G~~v~~~~~~~hD 179 (275)
-..+....-++.+.. ++.+.+.++++++.. ...++.++.++..
T Consensus 158 v~D~~~PdRIViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE 203 (414)
T COG1004 158 VYDFLYPDRIVIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAE 203 (414)
T ss_pred hhhccCCCeEEEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHH
Confidence 122333334444332 444678888888775 7777887766544
No 92
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.33 E-value=6.1e-11 Score=115.82 Aligned_cols=153 Identities=13% Similarity=0.085 Sum_probs=115.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHH-----------HHc-------------CceEecChHHHh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLC-----------HRS-------------GISFFSDKRAFL 64 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a-----------~~~-------------g~~~~~~~~~~~ 64 (275)
...+|+|||+|.||+.+|..++.+|++|+++|++++ .+.+ .+. .++.+++.+.
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-- 411 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSG-- 411 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH--
Confidence 446899999999999999999999999999999974 2211 111 2356677765
Q ss_pred ccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897 65 EADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF 141 (275)
Q Consensus 65 ~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~ 141 (275)
+++||+||-|||.+. -.+++.++ .. +++++|+...+|.- ....+.+.+....+|++.|+..++..- .
T Consensus 412 ~~~aDlViEAv~E~l~~K~~vf~~l~~~--~~~~~ilasNTSsl--~i~~la~~~~~p~r~ig~Hff~P~~~m------~ 481 (737)
T TIGR02441 412 FKNADMVIEAVFEDLSLKHKVIKEVEAV--VPPHCIIASNTSAL--PIKDIAAVSSRPEKVIGMHYFSPVDKM------Q 481 (737)
T ss_pred hccCCeehhhccccHHHHHHHHHHHHhh--CCCCcEEEEcCCCC--CHHHHHhhcCCccceEEEeccCCcccC------c
Confidence 389999999999974 35888888 76 88999998766543 345566666656789999997766532 1
Q ss_pred ceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897 142 AFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS 174 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~ 174 (275)
.+-++++..++++.++.+.++++.+|..++++.
T Consensus 482 LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~ 514 (737)
T TIGR02441 482 LLEIITHDGTSKDTLASAVAVGLKQGKVVIVVK 514 (737)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEC
Confidence 233344455688899999999999999888873
No 93
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.31 E-value=1.2e-10 Score=113.71 Aligned_cols=153 Identities=16% Similarity=0.087 Sum_probs=114.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHH-HCCCeEEEEcCChh-hhHH-----------HHc-------------CceEecChHHH
Q 023897 10 STLKIGIIGFGPFGQFLAKTMI-KQGHILRATSRTDH-SQLC-----------HRS-------------GISFFSDKRAF 63 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~-~~g~~V~~~dr~~~-~~~a-----------~~~-------------g~~~~~~~~~~ 63 (275)
...||+|||+|.||..+|..++ ..|++|+++|++++ ...+ .+. .++.+++.+.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 386 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG- 386 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-
Confidence 3468999999999999999999 88999999999874 2211 111 2356677754
Q ss_pred hccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccc
Q 023897 64 LEADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKD 140 (275)
Q Consensus 64 ~~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g 140 (275)
+++||+||-|+|.+. -.+++.++ .. +++++++...+|.- ....+.+.+....+|++.|+..++..-
T Consensus 387 -~~~aDlViEav~E~~~~K~~v~~~le~~--~~~~~ilasnTS~l--~i~~la~~~~~p~r~ig~Hff~P~~~~------ 455 (708)
T PRK11154 387 -FKHADVVIEAVFEDLALKQQMVAEVEQN--CAPHTIFASNTSSL--PIGQIAAAAARPEQVIGLHYFSPVEKM------ 455 (708)
T ss_pred -hccCCEEeecccccHHHHHHHHHHHHhh--CCCCcEEEECCCCC--CHHHHHHhcCcccceEEEecCCccccC------
Confidence 389999999999964 35788888 76 88999998766643 345566666555789999987666532
Q ss_pred cceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897 141 FAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS 174 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~ 174 (275)
..+=+++++.++++.++.+.++++.+|..++++.
T Consensus 456 ~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~ 489 (708)
T PRK11154 456 PLVEVIPHAKTSAETIATTVALAKKQGKTPIVVR 489 (708)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 2233445556789999999999999999888773
No 94
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.26 E-value=1.5e-09 Score=95.67 Aligned_cols=232 Identities=16% Similarity=0.209 Sum_probs=137.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE-------------ecChHHHhccCCCEEEEecCch
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF-------------FSDKRAFLEADNDVILISTSIL 78 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~-------------~~~~~~~~~~~aD~iilavp~~ 78 (275)
|||+|+|+|.||+.++..|.++|++|+++.|++..+...+.|+.+ ..+.+. ...+|+||++|+..
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~--~~~~Dlviv~vKa~ 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEA--LGPADLVIVTVKAY 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhh--cCCCCEEEEEeccc
Confidence 799999999999999999999999999999998644444445421 122222 26899999999999
Q ss_pred hHHHHhhcC-CCCCCCCCcEEEeC-CCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCC---ccc-cceeeeeeecCC
Q 023897 79 SLSEVLNSL-PVHCLQRRTLIADV-LSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNG---WKD-FAFVYEKVRIRD 152 (275)
Q Consensus 79 ~~~~v~~~l-~~~~l~~~~iv~d~-~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~---~~g-~~~~~~~~~~~~ 152 (275)
++.+++..+ +. +++++.|+-+ .+... .+.+.+.++.. .++.+--..|....+.+ ..| ..+.+....+..
T Consensus 79 q~~~al~~l~~~--~~~~t~vl~lqNG~g~--~e~l~~~~~~~-~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~ 153 (307)
T COG1893 79 QLEEALPSLAPL--LGPNTVVLFLQNGLGH--EEELRKILPKE-TVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGR 153 (307)
T ss_pred cHHHHHHHhhhc--CCCCcEEEEEeCCCcH--HHHHHHhCCcc-eEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCc
Confidence 999999999 87 8888765543 33332 34677776644 33322211122111111 122 122222222223
Q ss_pred hHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhH-----HHHHH----------------HHhhcccc-----cCcc
Q 023897 153 EATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLT-----HTIGR----------------VLSELEIQ-----STSM 206 (275)
Q Consensus 153 ~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp-----~~~a~----------------~l~~~~~~-----~~~l 206 (275)
++..+.+.++|+..|..+.+.+.-.+.....++-..+ .++.. .+...... -..+
T Consensus 154 ~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~ 233 (307)
T COG1893 154 DELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVEL 233 (307)
T ss_pred hHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCC
Confidence 4678888999999999887765444444433322111 11100 00000000 0122
Q ss_pred cCcchHHHHHHhhcC-CCCChhhHHHHHHHCHHHHHHHHHHHHHH
Q 023897 207 NTKGFETLIRLKESS-VNDSFDLFSGLYIHNRFAKQELLDLEAAF 250 (275)
Q Consensus 207 ~~~~~~~~~rl~~~~-~~~~p~~~~~i~~~N~~~~~~l~~~~~~l 250 (275)
....+....+..... ....+.|++|+....++.++.|.-+.-.+
T Consensus 234 ~~~~~~~v~~~~~~~~~~~~sSM~qDl~~gr~tEid~i~G~vv~~ 278 (307)
T COG1893 234 PEEVVERVLAVIRATDAENYSSMLQDLEKGRPTEIDAINGAVVRL 278 (307)
T ss_pred CHHHHHHHHHHHHhcccccCchHHHHHHcCCcccHHHHhhHHHHH
Confidence 333344555555554 34558999999987777777777766554
No 95
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.26 E-value=6.7e-10 Score=103.20 Aligned_cols=170 Identities=12% Similarity=0.100 Sum_probs=109.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhhhHHHHc--------------------CceEecChHHHhccCC
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHSQLCHRS--------------------GISFFSDKRAFLEADN 68 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~~~a~~~--------------------g~~~~~~~~~~~~~~a 68 (275)
+|||+|||+|.+|..+|..|++.| ++|+++|++++...+.+. ....+++..++ +.++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~-i~~a 79 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKH-VAEA 79 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHH-HhcC
Confidence 589999999999999999999985 789999999753221110 13566777765 4899
Q ss_pred CEEEEecCch---------------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC---CC-ceeecCCC
Q 023897 69 DVILISTSIL---------------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE---EM-DVLCTHPM 128 (275)
Q Consensus 69 D~iilavp~~---------------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~---~~-~~v~~hP~ 128 (275)
|++|+|||+. .+.++++.+ +. ++++++|+--+++.....+.+.+.+.. +. .++...|.
T Consensus 80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~--l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADV--SKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhh--CCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 9999999632 467888888 77 888999887777666555555443321 22 24566665
Q ss_pred CCCC-CCcCCccccceeeeeeecC--ChHHHHHHHHHHHHcC--CeEEEcChhHHHHHHHH
Q 023897 129 FGPE-SGQNGWKDFAFVYEKVRIR--DEATCSSFLRIFESEG--CKMLEMSCEEHDKVAAK 184 (275)
Q Consensus 129 ~g~~-~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~G--~~v~~~~~~~hD~~~a~ 184 (275)
+-.+ ..-..+...+.++.+.... .++..+.++++++.+- ..+..++.+. ..+..+
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~-AE~~K~ 217 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWS-AELSKL 217 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHH-HHHHHH
Confidence 4332 1223345556565433210 1345788889998874 4556666554 334443
No 96
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=99.24 E-value=9.5e-10 Score=91.71 Aligned_cols=161 Identities=16% Similarity=0.224 Sum_probs=118.2
Q ss_pred CCeEEEEcCChH--------------------HHHHHHHHHHCCCeEEEEcCChhh------hHHHHcCceEecChHHHh
Q 023897 11 TLKIGIIGFGPF--------------------GQFLAKTMIKQGHILRATSRTDHS------QLCHRSGISFFSDKRAFL 64 (275)
Q Consensus 11 ~~~I~IIG~G~m--------------------G~sla~~L~~~g~~V~~~dr~~~~------~~a~~~g~~~~~~~~~~~ 64 (275)
+|||+|.|+|+- |+.||..++++||+|++.++|.+. +.-...|++++++-.++
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~ea- 79 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEA- 79 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhh-
Confidence 489999999985 889999999999999999988642 23456799888777775
Q ss_pred ccCCCEEEEecCch-hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHH-HHHHhhCC---CCCceeecCCCCCCCCCcCCc
Q 023897 65 EADNDVILISTSIL-SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPR-NVLLQVLP---EEMDVLCTHPMFGPESGQNGW 138 (275)
Q Consensus 65 ~~~aD~iilavp~~-~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~-~~l~~~l~---~~~~~v~~hP~~g~~~~~~~~ 138 (275)
++.+++.++-+|.. .+..+.+++ ++ ++.|.+++.++++....+ ..++..|. .++-+-+.||-.-|....
T Consensus 80 a~~~Ei~VLFTPFGk~T~~Iarei~~h--vpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~--- 154 (340)
T COG4007 80 AEHGEIHVLFTPFGKATFGIAREILEH--VPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ--- 154 (340)
T ss_pred hhcceEEEEecccchhhHHHHHHHHhh--CcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC---
Confidence 58999999999998 778899999 87 899999999888766543 33444443 234566778854443211
Q ss_pred cccceeeeee-----ecCChHHHHHHHHHHHHcCCeEEEcChhHH
Q 023897 139 KDFAFVYEKV-----RIRDEATCSSFLRIFESEGCKMLEMSCEEH 178 (275)
Q Consensus 139 ~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~G~~v~~~~~~~h 178 (275)
++. +++.+. .-.+++.++++.++.++.|..+|+++++--
T Consensus 155 h~~-yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~padv~ 198 (340)
T COG4007 155 HGH-YVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPADVV 198 (340)
T ss_pred Cce-EEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHHHH
Confidence 222 332211 113678899999999999999999986533
No 97
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.20 E-value=3.2e-11 Score=95.79 Aligned_cols=115 Identities=18% Similarity=0.133 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChh-h-hHHHHcCc----eEecChHHHhccCCCEEEEecCchhH-
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDH-S-QLCHRSGI----SFFSDKRAFLEADNDVILISTSILSL- 80 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~-~-~~a~~~g~----~~~~~~~~~~~~~aD~iilavp~~~~- 80 (275)
...++|+|+|+|.||.+++..|.+.| ++|++++|+++ . +.+.+.+. ....+.++. ++++|+||.|+|+...
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEEL-LAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhc-cccCCEEEeCcCCCCCC
Confidence 45679999999999999999999986 78999999974 2 23344342 234566664 4899999999999864
Q ss_pred -HHHhhcCCCCCCCCCcEEEeCCCCCh--hHHHHHHhhCCCCCceeecCCCC
Q 023897 81 -SEVLNSLPVHCLQRRTLIADVLSVKE--YPRNVLLQVLPEEMDVLCTHPMF 129 (275)
Q Consensus 81 -~~v~~~l~~~~l~~~~iv~d~~s~k~--~~~~~l~~~l~~~~~~v~~hP~~ 129 (275)
.++...... ++++++++|+++.+. ...+.+++ .+..++++|||+
T Consensus 96 ~~~~~~~~~~--~~~~~~v~D~~~~~~~~~l~~~~~~---~g~~~v~g~~~~ 142 (155)
T cd01065 96 GDELPLPPSL--LKPGGVVYDVVYNPLETPLLKEARA---LGAKTIDGLEML 142 (155)
T ss_pred CCCCCCCHHH--cCCCCEEEEcCcCCCCCHHHHHHHH---CCCceeCCHHHH
Confidence 111111112 578899999998876 33344333 357889888875
No 98
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=3e-10 Score=100.09 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=108.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-h-HHHH----cCceEecChHHHh--ccCCCEEEEecCch-hH
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-Q-LCHR----SGISFFSDKRAFL--EADNDVILISTSIL-SL 80 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~-~a~~----~g~~~~~~~~~~~--~~~aD~iilavp~~-~~ 80 (275)
.++.||+||+|.||+.||..+.++|+.|.+|+|+.+. . ...+ ..+..+.++++.+ ++..--|++.|+.. .+
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~V 81 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPV 81 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcH
Confidence 4568999999999999999999999999999999853 2 2222 2345556676643 25677888888874 46
Q ss_pred HHHhhcC-CCCCCCCCcEEEeCCCCC-hhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHH
Q 023897 81 SEVLNSL-PVHCLQRRTLIADVLSVK-EYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSS 158 (275)
Q Consensus 81 ~~v~~~l-~~~~l~~~~iv~d~~s~k-~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 158 (275)
..+++++ |+ +.+|.|++|-++.. .+......++...+..||+. =++|.+.+ ...-|.++.+ .++++++.
T Consensus 82 D~~I~~L~p~--Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~-GVSGGEeG---A~~GPSiMpG---G~~eay~~ 152 (473)
T COG0362 82 DAVIEQLLPL--LEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGM-GVSGGEEG---ARHGPSIMPG---GQKEAYEL 152 (473)
T ss_pred HHHHHHHHhh--cCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEec-cccccccc---cccCCCcCCC---CCHHHHHH
Confidence 7889999 98 99999999988654 33444555555567889984 34555533 3334566543 37889999
Q ss_pred HHHHHHHcCCe
Q 023897 159 FLRIFESEGCK 169 (275)
Q Consensus 159 ~~~l~~~~G~~ 169 (275)
++.+|..+.++
T Consensus 153 v~pil~~IaAk 163 (473)
T COG0362 153 VAPILTKIAAK 163 (473)
T ss_pred HHHHHHHHHhh
Confidence 99999987543
No 99
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.15 E-value=2.5e-09 Score=93.44 Aligned_cols=186 Identities=13% Similarity=0.121 Sum_probs=116.6
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh-c
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN-S 86 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~-~ 86 (275)
...++|+|||+|.||..+|+.|+..|++|++|+|... ...+...|... .+++++ ++.||+|++++|......++. +
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Ea-ak~ADVV~llLPd~~t~~V~~~e 91 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEA-VRTAQVVQMLLPDEQQAHVYKAE 91 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHH-HhcCCEEEEeCCChHHHHHHHHH
Confidence 4668999999999999999999999999999987643 34556667765 378886 589999999999877778774 4
Q ss_pred C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCC-CCc--CCccccceeeeeeecCChHHHHHHHH
Q 023897 87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPE-SGQ--NGWKDFAFVYEKVRIRDEATCSSFLR 161 (275)
Q Consensus 87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~-~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~ 161 (275)
+ +. +++|.+++=.-+... . ..... |.++.++=..|=.+.. ... ..-.|.|.++.-..-.+..+.+....
T Consensus 92 il~~--MK~GaiL~f~hgfni-~---~~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala 165 (335)
T PRK13403 92 VEEN--LREGQMLLFSHGFNI-H---FGQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALA 165 (335)
T ss_pred HHhc--CCCCCEEEECCCcce-e---cCceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHH
Confidence 5 76 889887763322111 0 11111 3455555444422111 100 11146666655332234557778888
Q ss_pred HHHHcCCe---EEEcCh---hHHHHHH---HHhhhhHHHH---HHHHhhcccc
Q 023897 162 IFESEGCK---MLEMSC---EEHDKVA---AKSQFLTHTI---GRVLSELEIQ 202 (275)
Q Consensus 162 l~~~~G~~---v~~~~~---~~hD~~~---a~~~~lp~~~---a~~l~~~~~~ 202 (275)
....+|+. ++.++- .+-|... .+++.+..++ -..|++.|..
T Consensus 166 ~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~ 218 (335)
T PRK13403 166 YAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYR 218 (335)
T ss_pred HHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCC
Confidence 88999876 555542 2445432 2344555443 2355555554
No 100
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.15 E-value=2.5e-09 Score=94.75 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=100.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHH--------------------HHcC-ceEecChHHHhccCCCE
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLC--------------------HRSG-ISFFSDKRAFLEADNDV 70 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a--------------------~~~g-~~~~~~~~~~~~~~aD~ 70 (275)
++|+|||+|.+|..+|..++++|++|+++|.++..... .+.| .+.+++.+++ +.||+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l--~~~dv 87 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL--KECDV 87 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc--ccCCE
Confidence 79999999999999999999999999999999742211 1222 3678888874 79999
Q ss_pred EEEecCch----------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHH----Hhh---CCCCCceeecCCCCCCC
Q 023897 71 ILISTSIL----------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVL----LQV---LPEEMDVLCTHPMFGPE 132 (275)
Q Consensus 71 iilavp~~----------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l----~~~---l~~~~~~v~~hP~~g~~ 132 (275)
+++|||.. .+....+.+ +. |++|.+++-=+++.....+.+ .+. |.-+..|.-.| .|+
T Consensus 88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa~~--L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lay---sPE 162 (436)
T COG0677 88 FIICVPTPLKKYREPDLSYVESAARSIAPV--LKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAY---SPE 162 (436)
T ss_pred EEEEecCCcCCCCCCChHHHHHHHHHHHHh--cCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEee---Ccc
Confidence 99999983 466777888 77 999998876555554444433 332 11122232222 334
Q ss_pred CCcCC-----ccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897 133 SGQNG-----WKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMS 174 (275)
Q Consensus 133 ~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~ 174 (275)
.-.++ ....+-++. +.+++..+..+.|++.+--.++.++
T Consensus 163 Rv~PG~~~~el~~~~kVIg---G~tp~~~e~a~~lY~~iv~~~~~vt 206 (436)
T COG0677 163 RVLPGNVLKELVNNPKVIG---GVTPKCAELAAALYKTIVEGVIPVT 206 (436)
T ss_pred ccCCCchhhhhhcCCceee---cCCHHHHHHHHHHHHHheEEEEEcC
Confidence 32111 122333443 2367777888888888765555554
No 101
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=99.10 E-value=7.4e-10 Score=96.00 Aligned_cols=210 Identities=12% Similarity=0.156 Sum_probs=132.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHC--C-----CeEEEEcCChhhh-----HHH--H---------------cCceEecCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQ--G-----HILRATSRTDHSQ-----LCH--R---------------SGISFFSDK 60 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~--g-----~~V~~~dr~~~~~-----~a~--~---------------~g~~~~~~~ 60 (275)
...||+|||.|+||+++|+.+.+. + .+|..|-+..... ... + .++...+|+
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 346899999999999999999874 2 2677776554211 110 0 123467788
Q ss_pred HHHhccCCCEEEEecCchhHHHHhhcC-CCCCCCCCcEEEeCC-C----CCh----hHHHHHHhhCCCCCceeecCCCCC
Q 023897 61 RAFLEADNDVILISTSILSLSEVLNSL-PVHCLQRRTLIADVL-S----VKE----YPRNVLLQVLPEEMDVLCTHPMFG 130 (275)
Q Consensus 61 ~~~~~~~aD~iilavp~~~~~~v~~~l-~~~~l~~~~iv~d~~-s----~k~----~~~~~l~~~l~~~~~~v~~hP~~g 130 (275)
.++ +.+||+++..+|.+.+..+++++ .+ ++++...+++. + -++ -+.+.+.+.++-...+ +.|
T Consensus 100 ~ea-~~dADilvf~vPhQf~~~ic~~l~g~--vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~v-----L~G 171 (372)
T KOG2711|consen 100 VEA-AKDADILVFVVPHQFIPRICEQLKGY--VKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSV-----LMG 171 (372)
T ss_pred HHH-hccCCEEEEeCChhhHHHHHHHHhcc--cCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCcee-----ecC
Confidence 886 58999999999999999999999 77 88887776532 0 111 1344555555433333 345
Q ss_pred CCCCcCCccccceeeeeeecCChHHH-HHHHHHHHHcCCeEEEcChhHHHHHHH-HhhhhHHHHHHHHh--h-ccccc--
Q 023897 131 PESGQNGWKDFAFVYEKVRIRDEATC-SSFLRIFESEGCKMLEMSCEEHDKVAA-KSQFLTHTIGRVLS--E-LEIQS-- 203 (275)
Q Consensus 131 ~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~l~~~~G~~v~~~~~~~hD~~~a-~~~~lp~~~a~~l~--~-~~~~~-- 203 (275)
++.+.|.+.+...-.+-. +.++... ..+.++|+.-.++++.++ |.... +.+.|.+++|.+.. + ++...
T Consensus 172 aNiA~EVa~~~f~e~tIg-~~~~~~~~~~l~~lf~~p~FrV~~~~----D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NT 246 (372)
T KOG2711|consen 172 ANIASEVANEKFCETTIG-YKDKKEAGILLKKLFRTPYFRVVVVE----DADGVEICGALKNVVAIAAGFVDGLGLGNNT 246 (372)
T ss_pred CchHHHHHhccccceeEe-ccchhhcchHHHHHhCCCceEEEEec----cchHhHHhhhHHhHHHHhhhhhhhccCCcch
Confidence 555444333321111111 1122222 358999999999988875 55443 55799999876554 3 33322
Q ss_pred -CcccCcchHHHHHHhhcCCCC-ChhhHHHH
Q 023897 204 -TSMNTKGFETLIRLKESSVND-SFDLFSGL 232 (275)
Q Consensus 204 -~~l~~~~~~~~~rl~~~~~~~-~p~~~~~i 232 (275)
..+.-.|+.+|.+++.-.+.+ .|++|.+-
T Consensus 247 kaAi~r~Gl~Em~~F~~~f~p~~~~~t~~es 277 (372)
T KOG2711|consen 247 KAAIIRLGLLEMIKFATHFYPGSKPTTFFES 277 (372)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCCcceeecc
Confidence 346677899999988887766 56555443
No 102
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.10 E-value=1.7e-09 Score=96.66 Aligned_cols=107 Identities=20% Similarity=0.294 Sum_probs=79.4
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHhh-
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVLN- 85 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~- 85 (275)
....++|||||+|+||+.+|+.|+..|.+|.+|||++........|... .+++++ +++||+|++++|... +..++.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~-~~l~el-l~~aDiV~l~lP~t~~T~~~i~~ 224 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEY-RPLEEL-LRESDFVSLHVPLTKETYHMINE 224 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEe-cCHHHH-HhhCCEEEEeCCCChHHhhccCH
Confidence 4567899999999999999999999999999999987433334445544 478886 589999999999753 455553
Q ss_pred cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897 86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE 118 (275)
Q Consensus 86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~ 118 (275)
+. .. +++|.++++++.......+.+.+.+..
T Consensus 225 ~~~~~--mk~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 225 ERLKL--MKPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred HHHhc--CCCCeEEEECcCchhcCHHHHHHHHHc
Confidence 33 55 889999999986544334455555543
No 103
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.07 E-value=1.1e-08 Score=90.42 Aligned_cols=164 Identities=12% Similarity=0.146 Sum_probs=98.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh-hhhHHH-HcCceEe------------cChHHHhccCCCEEEEecC
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD-HSQLCH-RSGISFF------------SDKRAFLEADNDVILISTS 76 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~-~~~~a~-~~g~~~~------------~~~~~~~~~~aD~iilavp 76 (275)
.|||+|+|+|.||+.+|..|.+.|++|++++|.+ ..+... +.|+... .+.++ ...+|+||+||+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~--~~~~D~viv~vK 79 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADA--AEPIHRLLLACK 79 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCccc--ccccCEEEEECC
Confidence 4799999999999999999999999999999986 333222 2243221 11111 246899999999
Q ss_pred chhHHHHhhcC-CCCCCCCCcEEEeCC-CCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCC---ccccceeeeeeecC
Q 023897 77 ILSLSEVLNSL-PVHCLQRRTLIADVL-SVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNG---WKDFAFVYEKVRIR 151 (275)
Q Consensus 77 ~~~~~~v~~~l-~~~~l~~~~iv~d~~-s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~---~~g~~~~~~~~~~~ 151 (275)
.....+++..+ +. +.+++.++.+- ++- ..+.+.+.++.. +++++--..|....+++ ..+...+..+..
T Consensus 80 ~~~~~~al~~l~~~--l~~~t~vv~lQNGv~--~~e~l~~~~~~~-~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~-- 152 (305)
T PRK05708 80 AYDAEPAVASLAHR--LAPGAELLLLQNGLG--SQDAVAARVPHA-RCIFASSTEGAFRDGDWRVVFAGHGFTWLGDP-- 152 (305)
T ss_pred HHhHHHHHHHHHhh--CCCCCEEEEEeCCCC--CHHHHHHhCCCC-cEEEEEeeeceecCCCCEEEEeceEEEEEcCC--
Confidence 99999999999 87 88887666433 332 234566666543 23322222222211100 111111222211
Q ss_pred ChHHHHHHHHHHHHcCCeEEEcChhHHHHHHH
Q 023897 152 DEATCSSFLRIFESEGCKMLEMSCEEHDKVAA 183 (275)
Q Consensus 152 ~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a 183 (275)
+.+..+.+.++|...|..+...+.-+......
T Consensus 153 ~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~K 184 (305)
T PRK05708 153 RNPTAPAWLDDLREAGIPHEWTVDILTRLWRK 184 (305)
T ss_pred CCcchHHHHHHHHhcCCCCccCHHHHHHHHHH
Confidence 22345778888888887666544334444444
No 104
>PLN03139 formate dehydrogenase; Provisional
Probab=99.03 E-value=9.5e-09 Score=92.99 Aligned_cols=108 Identities=18% Similarity=0.240 Sum_probs=81.4
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN 85 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~ 85 (275)
....++|||||+|+||..+|+.|+..|.+|.+|||+.. .....+.|+....+++++ ++++|+|++++|.. .+..++.
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~el-l~~sDvV~l~lPlt~~T~~li~ 274 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAM-LPKCDVVVINTPLTEKTRGMFN 274 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHH-HhhCCEEEEeCCCCHHHHHHhC
Confidence 45778999999999999999999999999999999863 333445677666789996 58999999999964 4556554
Q ss_pred c-C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897 86 S-L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE 118 (275)
Q Consensus 86 ~-l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~ 118 (275)
+ . .. +++|.++++++--.....+.+.+.+..
T Consensus 275 ~~~l~~--mk~ga~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 275 KERIAK--MKKGVLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred HHHHhh--CCCCeEEEECCCCchhhHHHHHHHHHc
Confidence 2 2 44 899999999885443333455555543
No 105
>PRK07574 formate dehydrogenase; Provisional
Probab=99.03 E-value=8.6e-09 Score=93.32 Aligned_cols=107 Identities=15% Similarity=0.285 Sum_probs=81.5
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh-hhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD-HSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN 85 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~-~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~ 85 (275)
....++|||||+|+||+.+|+.|+..|.+|.+|||+. ........|+....+++++ ++.||+|++++|.. .+..++.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~el-l~~aDvV~l~lPlt~~T~~li~ 267 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSL-VSVCDVVTIHCPLHPETEHLFD 267 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHH-hhcCCEEEEcCCCCHHHHHHhC
Confidence 3567899999999999999999999999999999986 3333345577666789996 58999999999964 4566664
Q ss_pred c-C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897 86 S-L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP 117 (275)
Q Consensus 86 ~-l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~ 117 (275)
+ . .. +++|.++++++.......+.+.+.+.
T Consensus 268 ~~~l~~--mk~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 268 ADVLSR--MKRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred HHHHhc--CCCCcEEEECCCCchhhHHHHHHHHH
Confidence 3 2 54 89999999988655433445555544
No 106
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.02 E-value=1.9e-09 Score=96.01 Aligned_cols=104 Identities=13% Similarity=0.191 Sum_probs=74.7
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-HHHHh-h
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEVL-N 85 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~-~ 85 (275)
....++|||||+|.||+++|+.|+..|++|++|||++..... ......+++++ ++++|+|++++|... +..++ .
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~---~~~~~~~l~el-l~~aDiVil~lP~t~~t~~li~~ 218 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD---FLTYKDSVKEA-IKDADIISLHVPANKESYHLFDK 218 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh---hhhccCCHHHH-HhcCCEEEEeCCCcHHHHHHHhH
Confidence 456789999999999999999999999999999998743211 12234578886 589999999999764 33333 3
Q ss_pred cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897 86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP 117 (275)
Q Consensus 86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~ 117 (275)
++ +. +++|.++++++--...-.+.+.+.+.
T Consensus 219 ~~l~~--mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 219 AMFDH--VKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred HHHhc--CCCCcEEEEcCCccccCHHHHHHHHH
Confidence 44 55 88999999987433222234444443
No 107
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.99 E-value=1.7e-09 Score=85.11 Aligned_cols=151 Identities=14% Similarity=0.104 Sum_probs=88.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHh-hc
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL-NS 86 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~-~~ 86 (275)
+.++|+|||+|..|.+.|..|++.|++|++..|... .+.|++.|.++. +..|+ ++++|+|++.+|+....++. ++
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eA-v~~aDvV~~L~PD~~q~~vy~~~ 80 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEA-VKKADVVMLLLPDEVQPEVYEEE 80 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHH-HHC-SEEEE-S-HHHHHHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHH-HhhCCEEEEeCChHHHHHHHHHH
Confidence 457999999999999999999999999999888764 578888999875 55665 48999999999999999998 67
Q ss_pred C-CCCCCCCCcEEEeCCCCChhHHHHHHhhC-CCCCceeecCCCCCCCCCc---CCccccceeeeeeecCChHHHHHHHH
Q 023897 87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVL-PEEMDVLCTHPMFGPESGQ---NGWKDFAFVYEKVRIRDEATCSSFLR 161 (275)
Q Consensus 87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l-~~~~~~v~~hP~~g~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~ 161 (275)
+ |+ +++|.++.=.-+. -+ ...... +.++.++-.+|-.+...-. ..-.|.|.++.-..-.+..+.+....
T Consensus 81 I~p~--l~~G~~L~fahGf--ni--~~~~i~pp~~vdV~mvAPKgpG~~vR~~y~~G~Gvp~l~AV~qD~sg~A~~~ala 154 (165)
T PF07991_consen 81 IAPN--LKPGATLVFAHGF--NI--HYGLIKPPKDVDVIMVAPKGPGHLVRREYVEGRGVPALIAVHQDASGKAKELALA 154 (165)
T ss_dssp HHHH--S-TT-EEEESSSH--HH--HCTTS---TTSEEEEEEESSSCHHHHHHHHCCTS--EEEEEEE-SSS-HHHHHHH
T ss_pred HHhh--CCCCCEEEeCCcc--hh--hcCcccCCCCCeEEEEecCCCChHHHHHHHcCCCceEEEEEEECCCchHHHHHHH
Confidence 7 88 9999887643221 11 111111 3445555555532221100 01135555544322223445566666
Q ss_pred HHHHcCC
Q 023897 162 IFESEGC 168 (275)
Q Consensus 162 l~~~~G~ 168 (275)
+...+|+
T Consensus 155 ~A~~iG~ 161 (165)
T PF07991_consen 155 YAKAIGG 161 (165)
T ss_dssp HHHHTTH
T ss_pred HHHHhCC
Confidence 6666653
No 108
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.98 E-value=9.6e-09 Score=91.05 Aligned_cols=109 Identities=15% Similarity=0.218 Sum_probs=80.7
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~ 86 (275)
....+++||||+|++|+.+|+.++..|.+|++||+..........+.....+++++ +++||+|++.+|.. .++.++..
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~l-L~~sDiv~lh~PlT~eT~g~i~~ 217 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDEL-LAEADILTLHLPLTPETRGLINA 217 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHH-HhhCCEEEEcCCCCcchhcccCH
Confidence 34578999999999999999999999999999999554334444556666789996 58999999999974 45666643
Q ss_pred C--CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC
Q 023897 87 L--PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE 119 (275)
Q Consensus 87 l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~ 119 (275)
- .. +++|.++++++--.....+.+.+.+..+
T Consensus 218 ~~~a~--MK~gailIN~aRG~vVde~aL~~AL~~G 250 (324)
T COG0111 218 EELAK--MKPGAILINAARGGVVDEDALLAALDSG 250 (324)
T ss_pred HHHhh--CCCCeEEEECCCcceecHHHHHHHHHcC
Confidence 3 44 8899999998743332234455555433
No 109
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.96 E-value=6.5e-09 Score=90.91 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=71.7
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe--cChHHHhccCCCEEEEecCchhHH-HH
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF--SDKRAFLEADNDVILISTSILSLS-EV 83 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~--~~~~~~~~~~aD~iilavp~~~~~-~v 83 (275)
.....+|+|||+|.+|.++|+.|+..|.+|++++|+++ ...+.+.|.... .++.+. +.++|+||.++|...+. +.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~-l~~aDiVint~P~~ii~~~~ 226 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEK-VAEIDIVINTIPALVLTADV 226 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHH-hccCCEEEECCChHHhCHHH
Confidence 44568999999999999999999999999999999984 444555565432 345564 48999999999976432 22
Q ss_pred hhcCCCCCCCCCcEEEeCCCCChh
Q 023897 84 LNSLPVHCLQRRTLIADVLSVKEY 107 (275)
Q Consensus 84 ~~~l~~~~l~~~~iv~d~~s~k~~ 107 (275)
+ .. ++++.+++|+++.+..
T Consensus 227 l---~~--~k~~aliIDlas~Pg~ 245 (287)
T TIGR02853 227 L---SK--LPKHAVIIDLASKPGG 245 (287)
T ss_pred H---hc--CCCCeEEEEeCcCCCC
Confidence 2 33 6778999999987654
No 110
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.96 E-value=1.5e-09 Score=88.48 Aligned_cols=106 Identities=16% Similarity=0.304 Sum_probs=73.3
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhH-HHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQL-CHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN 85 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~-a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~ 85 (275)
....++|||||+|.+|+.+|+.++..|.+|++|||+..... ....++. ..+++++ ++.+|+|++++|.. .+..++.
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~-~~~l~el-l~~aDiv~~~~plt~~T~~li~ 110 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVE-YVSLDEL-LAQADIVSLHLPLTPETRGLIN 110 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEE-ESSHHHH-HHH-SEEEE-SSSSTTTTTSBS
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccce-eeehhhh-cchhhhhhhhhccccccceeee
Confidence 45678999999999999999999999999999999986433 5555664 4588886 58999999999953 2333332
Q ss_pred cC--CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897 86 SL--PVHCLQRRTLIADVLSVKEYPRNVLLQVLP 117 (275)
Q Consensus 86 ~l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~ 117 (275)
+- .. +++|.++++++--.....+.+.+.+.
T Consensus 111 ~~~l~~--mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 111 AEFLAK--MKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp HHHHHT--STTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred eeeeec--cccceEEEeccchhhhhhhHHHHHHh
Confidence 21 33 78899999987543322344554443
No 111
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.94 E-value=3.4e-09 Score=94.62 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=73.4
Q ss_pred CCCCCeEEEEcCChHHHHHHHHH-HHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHH-HHhh
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTM-IKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLS-EVLN 85 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L-~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~-~v~~ 85 (275)
....++|||||+|.||+++|+.| ...|.+|++||+++.... ..++....+++++ ++++|+|++++|..... .++.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~~~~~~~~~l~el-l~~aDvIvl~lP~t~~t~~li~ 219 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--ATYVDYKDTIEEA-VEGADIVTLHMPATKYNHYLFN 219 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--HhhccccCCHHHH-HHhCCEEEEeCCCCcchhhhcC
Confidence 45678999999999999999999 446889999998864221 1234445688886 58999999999986543 3332
Q ss_pred -cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897 86 -SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL 116 (275)
Q Consensus 86 -~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l 116 (275)
+. +. +++|.++++++.......+.+.+.+
T Consensus 220 ~~~l~~--mk~gailIN~sRG~~vd~~aL~~aL 250 (332)
T PRK08605 220 ADLFKH--FKKGAVFVNCARGSLVDTKALLDAL 250 (332)
T ss_pred HHHHhc--CCCCcEEEECCCCcccCHHHHHHHH
Confidence 22 45 7899999998854433334444444
No 112
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.93 E-value=1.9e-08 Score=88.48 Aligned_cols=102 Identities=24% Similarity=0.357 Sum_probs=74.5
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCce-EecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGIS-FFSDKRAFLEADNDVILISTSIL-SLSEVLN 85 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~-~~~~~~~~~~~~aD~iilavp~~-~~~~v~~ 85 (275)
....++|||||+|.||+.+|+.++..|++|++|||+... .+.. ...+++++ +++||+|++++|.. .+..++.
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----~~~~~~~~~l~el-l~~aDiv~~~lp~t~~T~~li~ 192 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----DGISSIYMEPEDI-MKKSDFVLISLPLTDETRGMIN 192 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----cCcccccCCHHHH-HhhCCEEEECCCCCchhhcCcC
Confidence 456789999999999999999998889999999997531 1222 24578886 58999999999975 3455544
Q ss_pred c--CCCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897 86 S--LPVHCLQRRTLIADVLSVKEYPRNVLLQVLP 117 (275)
Q Consensus 86 ~--l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~ 117 (275)
+ +.. +++|.++++++.......+.+.+.+.
T Consensus 193 ~~~l~~--mk~ga~lIN~sRG~~vd~~aL~~aL~ 224 (303)
T PRK06436 193 SKMLSL--FRKGLAIINVARADVVDKNDMLNFLR 224 (303)
T ss_pred HHHHhc--CCCCeEEEECCCccccCHHHHHHHHH
Confidence 2 244 78999999988644433344555443
No 113
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.91 E-value=2.1e-08 Score=94.85 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh-
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN- 85 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~- 85 (275)
....++|||||+|.||+.+|+.|+..|.+|++||+......+.+.|+....+++++ +++||+|++++|.. .+..++.
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~el-l~~aDvV~l~lPlt~~T~~li~~ 213 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDEL-LARADFITVHTPLTPETRGLIGA 213 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHH-HhhCCEEEEccCCChhhccCcCH
Confidence 45678999999999999999999999999999998643334455677666688986 58999999999965 4555552
Q ss_pred -cCCCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897 86 -SLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPE 118 (275)
Q Consensus 86 -~l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~ 118 (275)
.+.. ++++.++++++.-.....+.+.+.+..
T Consensus 214 ~~l~~--mk~ga~lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 214 EELAK--MKKGVIIVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred HHHhc--CCCCeEEEEcCCCceeCHHHHHHHHHc
Confidence 2244 889999999885443233445554443
No 114
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.91 E-value=3.8e-08 Score=87.21 Aligned_cols=142 Identities=16% Similarity=0.091 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHCCCeEEEEcCChhh--------hHH-----------HHcC-------------ceEecC--hHHHhccC
Q 023897 22 FGQFLAKTMIKQGHILRATSRTDHS--------QLC-----------HRSG-------------ISFFSD--KRAFLEAD 67 (275)
Q Consensus 22 mG~sla~~L~~~g~~V~~~dr~~~~--------~~a-----------~~~g-------------~~~~~~--~~~~~~~~ 67 (275)
||+.+|..++.+|++|++||++++. +.+ .+.| ++++++ ..++ +++
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a-~~~ 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADA-LAD 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHH-hcc
Confidence 7999999999999999999998831 111 1112 234433 4464 489
Q ss_pred CCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccccee
Q 023897 68 NDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFV 144 (275)
Q Consensus 68 aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~ 144 (275)
||+||.|+|.+. -..++.++ .. +++++++...+|. .....+.+.++...++++.|+..+|..- ..+-
T Consensus 80 aD~ViEav~E~~~~K~~~f~~l~~~--~~~~~ilaSntS~--~~~~~la~~~~~p~r~~g~Hf~~Pp~~~------~lvE 149 (314)
T PRK08269 80 ADLVFEAVPEVLDAKREALRWLGRH--VDADAIIASTTST--FLVTDLQRHVAHPERFLNAHWLNPAYLM------PLVE 149 (314)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhh--CCCCcEEEEcccc--CCHHHHHhhcCCcccEEEEecCCccccC------ceEE
Confidence 999999999874 24667777 66 7899999765554 3345666666555689999998777542 1233
Q ss_pred eeeeecCChHHHHHHHHHHHHcCCeEEEcC
Q 023897 145 YEKVRIRDEATCSSFLRIFESEGCKMLEMS 174 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~ 174 (275)
++++..++++.++.+..+++.+|.+++++.
T Consensus 150 Vv~g~~t~~e~~~~~~~ll~~lGk~~v~v~ 179 (314)
T PRK08269 150 VSPSDATDPAVVDRLAALLERIGKVPVVCG 179 (314)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 344556688999999999999999988875
No 115
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.91 E-value=5.3e-09 Score=85.92 Aligned_cols=156 Identities=17% Similarity=0.075 Sum_probs=107.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHH-----------HcC--------------ceEecChHHHh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCH-----------RSG--------------ISFFSDKRAFL 64 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~-----------~~g--------------~~~~~~~~~~~ 64 (275)
..||+|+|.|.+|+++|..|+..||+|..||..++ ...|. +.| +..+++++|+
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~- 81 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNEL- 81 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHH-
Confidence 46999999999999999999999999999999874 22221 122 2457888996
Q ss_pred ccCCCEEEEecCchhH--HHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc
Q 023897 65 EADNDVILISTSILSL--SEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF 141 (275)
Q Consensus 65 ~~~aD~iilavp~~~~--~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~ 141 (275)
.++|=.|=-|+|.+-- ..+...+ .. +.+.+|+.+.+|+-- ...+.+-+....+.+-.||+.+|-.-+
T Consensus 82 vk~Ai~iQEcvpE~L~lkk~ly~qlD~i--~d~~tIlaSSTSt~m--pS~~s~gL~~k~q~lvaHPvNPPyfiP------ 151 (313)
T KOG2305|consen 82 VKGAIHIQECVPEDLNLKKQLYKQLDEI--ADPTTILASSTSTFM--PSKFSAGLINKEQCLVAHPVNPPYFIP------ 151 (313)
T ss_pred HhhhhhHHhhchHhhHHHHHHHHHHHHh--cCCceEEeccccccC--hHHHhhhhhhhhheeEecCCCCCcccc------
Confidence 5888888889998632 3344444 33 566777775544332 223333333334567789998886531
Q ss_pred ceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhH
Q 023897 142 AFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEE 177 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~ 177 (275)
.+-++|.+.+.++.+++..++++++|.+++....+.
T Consensus 152 LvElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei 187 (313)
T KOG2305|consen 152 LVELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREI 187 (313)
T ss_pred hheeccCCCCChhHHHHHHHHHHHhCCCCccccccc
Confidence 133445555678899999999999998888775443
No 116
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.89 E-value=3.1e-08 Score=93.73 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=80.1
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh-
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN- 85 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~- 85 (275)
....++|||||+|.||+.+|+.|+..|.+|++|||+.....+...|+... +++++ ++++|+|++++|.. .+..++.
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~-~l~el-l~~aDiV~l~lP~t~~t~~li~~ 214 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELV-SLDEL-LARADFITLHTPLTPETRGLIGA 214 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEE-cHHHH-HhhCCEEEEccCCChHhhcCcCH
Confidence 34678999999999999999999999999999999754334455677665 78886 58999999999975 4555553
Q ss_pred cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897 86 SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE 118 (275)
Q Consensus 86 ~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~ 118 (275)
+. .. ++++.++++++.......+.+.+.+..
T Consensus 215 ~~l~~--mk~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 215 EELAK--MKPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred HHHhc--CCCCeEEEECCCCceeCHHHHHHHHhc
Confidence 23 44 889999999875443333455555543
No 117
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.87 E-value=1.7e-08 Score=79.74 Aligned_cols=109 Identities=26% Similarity=0.380 Sum_probs=75.4
Q ss_pred EEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE--------------ecChHHHhccCCCEEEEecCchh
Q 023897 14 IGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF--------------FSDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 14 I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~--------------~~~~~~~~~~~aD~iilavp~~~ 79 (275)
|+|+|+|.||..+|..|++.|++|.+++|++..+...+.|+.. .....+. ...+|+||+||+..+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSAD-AGPYDLVIVAVKAYQ 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHH-HSTESEEEE-SSGGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhc-cCCCcEEEEEecccc
Confidence 7899999999999999999999999999998333333344422 1222122 378999999999999
Q ss_pred HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCC
Q 023897 80 LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHP 127 (275)
Q Consensus 80 ~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP 127 (275)
..++++.+ +. +.+++.++..-+--. ..+.+++.++.. +++.+..
T Consensus 80 ~~~~l~~l~~~--~~~~t~iv~~qNG~g-~~~~l~~~~~~~-~v~~g~~ 124 (151)
T PF02558_consen 80 LEQALQSLKPY--LDPNTTIVSLQNGMG-NEEVLAEYFPRP-RVLGGVT 124 (151)
T ss_dssp HHHHHHHHCTG--EETTEEEEEESSSSS-HHHHHHCHSTGS-GEEEEEE
T ss_pred hHHHHHHHhhc--cCCCcEEEEEeCCCC-cHHHHHHHcCCC-cEEEEEE
Confidence 99999999 76 777755554433322 346777776543 4444433
No 118
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.85 E-value=4.3e-09 Score=86.43 Aligned_cols=155 Identities=11% Similarity=0.091 Sum_probs=103.3
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-----------cC------------------ceEe
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-----------SG------------------ISFF 57 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-----------~g------------------~~~~ 57 (275)
.....+|+|||+|.||+.+|+.-+..|++|+++|++++ +..+.+ .+ +...
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~ 87 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS 87 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence 34556899999999999999999999999999999974 322211 00 1235
Q ss_pred cChHHHhccCCCEEEEecCchh--HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCC
Q 023897 58 SDKRAFLEADNDVILISTSILS--LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESG 134 (275)
Q Consensus 58 ~~~~~~~~~~aD~iilavp~~~--~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~ 134 (275)
++...+ +.++|+||-++-.+. -.++..++ .. .++.++++..+|.-. +..+...+....+|.+.|-+.++..
T Consensus 88 tnv~~~-v~dadliiEAivEn~diK~~lF~~l~~~--ak~~~il~tNTSSl~--lt~ia~~~~~~srf~GlHFfNPvPv- 161 (298)
T KOG2304|consen 88 TNVSDA-VSDADLIIEAIVENLDIKRKLFKDLDKI--AKSSTILATNTSSLS--LTDIASATQRPSRFAGLHFFNPVPV- 161 (298)
T ss_pred CCHHHh-hhhhHHHHHHHHHhHHHHHHHHHHHHhh--cccceEEeeccccee--HHHHHhhccChhhhceeeccCCchh-
Confidence 566665 478999988876542 35677777 54 677888875444322 3445555555578999996555442
Q ss_pred cCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEc
Q 023897 135 QNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEM 173 (275)
Q Consensus 135 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~ 173 (275)
... .-+..+..++++.+..+..+-+.+|..++-+
T Consensus 162 ----MKL-vEVir~~~TS~eTf~~l~~f~k~~gKttVac 195 (298)
T KOG2304|consen 162 ----MKL-VEVIRTDDTSDETFNALVDFGKAVGKTTVAC 195 (298)
T ss_pred ----HHH-hhhhcCCCCCHHHHHHHHHHHHHhCCCceee
Confidence 111 1122233357888899999999999776655
No 119
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.82 E-value=1.1e-07 Score=84.42 Aligned_cols=107 Identities=15% Similarity=0.230 Sum_probs=76.2
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHH-HCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMI-KQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN 85 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~-~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~ 85 (275)
....+++||||+|+||+.+|+.++ ..|.+|.+|+|..........++.. .+++++ +++||+|++++|-. .+..++.
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~-~~l~el-l~~sDvv~lh~plt~~T~~li~ 219 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARY-CDLDTL-LQESDFVCIILPLTDETHHLFG 219 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEe-cCHHHH-HHhCCEEEEeCCCChHHhhccC
Confidence 457789999999999999999997 6788999999875333233456654 488886 58999999999964 4555554
Q ss_pred cC--CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897 86 SL--PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE 118 (275)
Q Consensus 86 ~l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~ 118 (275)
.- .. ++++.++++++--.....+.+.+.+..
T Consensus 220 ~~~l~~--mk~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 220 AEQFAK--MKSSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred HHHHhc--CCCCeEEEECCCccccCHHHHHHHHHc
Confidence 22 44 889999999874322222445555443
No 120
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.80 E-value=3.4e-08 Score=85.74 Aligned_cols=79 Identities=15% Similarity=0.290 Sum_probs=63.1
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHC--CCeEE-EEcCChhh--hHHHHcCc-eEecChHHHhccCCCEEEEecCchhHH
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQ--GHILR-ATSRTDHS--QLCHRSGI-SFFSDKRAFLEADNDVILISTSILSLS 81 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~--g~~V~-~~dr~~~~--~~a~~~g~-~~~~~~~~~~~~~aD~iilavp~~~~~ 81 (275)
+|+++||||||+|.||..++..|.+. ++++. +|||+++. ..+.+.|. ...++.+++ +.++|+|++|+|.+...
T Consensus 3 ~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eel-l~~~D~Vvi~tp~~~h~ 81 (271)
T PRK13302 3 SRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQL-ATHADIVVEAAPASVLR 81 (271)
T ss_pred CCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHH-hcCCCEEEECCCcHHHH
Confidence 35668999999999999999999874 67776 68998753 34455564 566788886 58899999999999888
Q ss_pred HHhhcC
Q 023897 82 EVLNSL 87 (275)
Q Consensus 82 ~v~~~l 87 (275)
++....
T Consensus 82 e~~~~a 87 (271)
T PRK13302 82 AIVEPV 87 (271)
T ss_pred HHHHHH
Confidence 887766
No 121
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.78 E-value=1.2e-07 Score=83.86 Aligned_cols=106 Identities=21% Similarity=0.240 Sum_probs=73.9
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhh-HHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQ-LCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN 85 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~ 85 (275)
....++|||||+|.||+.+|+.|...|++|.+|++++... .... .....+++++ +++||+|++++|.. .+..++.
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~-l~~aDvvv~~lPlt~~T~~li~ 209 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAF-LSQTRVLINLLPNTPETVGIIN 209 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHH-HhcCCEEEECCCCCHHHHHHhH
Confidence 4566899999999999999999999999999999876321 0010 0112467886 58999999999964 4556654
Q ss_pred c-C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897 86 S-L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE 118 (275)
Q Consensus 86 ~-l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~ 118 (275)
+ . .. +++|.++++++--.....+.+.+.+..
T Consensus 210 ~~~l~~--mk~ga~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 210 QQLLEQ--LPDGAYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred HHHHhc--CCCCcEEEECCCccccCHHHHHHHHhc
Confidence 3 2 44 889999999874322222345444443
No 122
>PLN02928 oxidoreductase family protein
Probab=98.78 E-value=1.4e-07 Score=84.78 Aligned_cols=107 Identities=19% Similarity=0.252 Sum_probs=73.9
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHH-------------cCceEecChHHHhccCCCEEEEe
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHR-------------SGISFFSDKRAFLEADNDVILIS 74 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~-------------~g~~~~~~~~~~~~~~aD~iila 74 (275)
....++|||||+|.||+.+|+.|+..|.+|++|||+........ .+. ...+++++ +++||+|+++
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~el-l~~aDiVvl~ 233 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEF-AGEADIVVLC 233 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHH-HhhCCEEEEC
Confidence 45678999999999999999999999999999999742111110 011 23578886 5899999999
Q ss_pred cCch-hHHHHhhc-C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897 75 TSIL-SLSEVLNS-L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE 118 (275)
Q Consensus 75 vp~~-~~~~v~~~-l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~ 118 (275)
+|-. .+..++.+ . .. +++|.++++++--...-.+.+.+.+..
T Consensus 234 lPlt~~T~~li~~~~l~~--Mk~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 234 CTLTKETAGIVNDEFLSS--MKKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred CCCChHhhcccCHHHHhc--CCCCeEEEECCCccccCHHHHHHHHHc
Confidence 9964 34445432 2 44 889999999874332223445555543
No 123
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.75 E-value=1.2e-07 Score=83.41 Aligned_cols=94 Identities=26% Similarity=0.300 Sum_probs=72.6
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe--cChHHHhccCCCEEEEecCchhHH-HH
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF--SDKRAFLEADNDVILISTSILSLS-EV 83 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~--~~~~~~~~~~aD~iilavp~~~~~-~v 83 (275)
.....|++|||+|.+|..++..|+..|.+|++++|++. ...+...|.... .++.+. +.++|+||.|+|...+. +.
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~-l~~aDiVI~t~p~~~i~~~~ 227 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEE-VGKIDIIFNTIPALVLTKEV 227 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHH-hCCCCEEEECCChhhhhHHH
Confidence 44568999999999999999999999999999999984 455666777543 345564 48999999999976432 22
Q ss_pred hhcCCCCCCCCCcEEEeCCCCChh
Q 023897 84 LNSLPVHCLQRRTLIADVLSVKEY 107 (275)
Q Consensus 84 ~~~l~~~~l~~~~iv~d~~s~k~~ 107 (275)
+ .. ++++.+++|+++..+.
T Consensus 228 l---~~--~~~g~vIIDla~~pgg 246 (296)
T PRK08306 228 L---SK--MPPEALIIDLASKPGG 246 (296)
T ss_pred H---Hc--CCCCcEEEEEccCCCC
Confidence 2 33 6788999999876654
No 124
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.74 E-value=4.9e-07 Score=82.27 Aligned_cols=159 Identities=15% Similarity=0.136 Sum_probs=103.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCC------h-hhhHHHHcCceEecChHHHhccCCCEEEEecCchhHH
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT------D-HSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLS 81 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~------~-~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~ 81 (275)
...++|+|||+|.+|.+.|..|+..|++|++--|. . ....|.+.|..+ .+.+++ ++.||+|++.+|...-.
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea-~~~ADvVviLlPDt~q~ 111 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEEL-IPQADLVINLTPDKQHS 111 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHH-HHhCCEEEEcCChHHHH
Confidence 46689999999999999999999999999854443 2 234556668866 567776 58999999999999767
Q ss_pred HHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCC-CCCCCc--CCccccceeeeeee--cCChHH
Q 023897 82 EVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMF-GPESGQ--NGWKDFAFVYEKVR--IRDEAT 155 (275)
Q Consensus 82 ~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~-g~~~~~--~~~~g~~~~~~~~~--~~~~~~ 155 (275)
.+.+++ +. +++|..+.=.-+.. +... .-..+.++.++-..|=. |++... ..-.|.|..+.-.. -.+..+
T Consensus 112 ~v~~~i~p~--LK~Ga~L~fsHGFn--i~~~-~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a 186 (487)
T PRK05225 112 DVVRAVQPL--MKQGAALGYSHGFN--IVEV-GEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEG 186 (487)
T ss_pred HHHHHHHhh--CCCCCEEEecCCce--eeeC-ceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchH
Confidence 777888 88 99988775222211 1100 11124556666555532 222211 01146676665431 124557
Q ss_pred HHHHHHHHHHcCCe---EEEcC
Q 023897 156 CSSFLRIFESEGCK---MLEMS 174 (275)
Q Consensus 156 ~~~~~~l~~~~G~~---v~~~~ 174 (275)
.+....+...+|+. ++..+
T Consensus 187 ~~~ala~a~~iG~~ragv~~tt 208 (487)
T PRK05225 187 MAIAKAWAAATGGHRAGVLESS 208 (487)
T ss_pred HHHHHHHHHHhCCCccceeecc
Confidence 77888888889876 55554
No 125
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.72 E-value=6.6e-08 Score=85.70 Aligned_cols=92 Identities=16% Similarity=0.302 Sum_probs=71.7
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~ 86 (275)
....+++||||+|+||.++|+.++.-|.+|..|+|++..+...+.+..+.. ++++ ++++|+|.+.+|.. ....++..
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~-l~el-l~~sDii~l~~Plt~~T~hLin~ 220 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVD-LDEL-LAESDIISLHCPLTPETRHLINA 220 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceecc-HHHH-HHhCCEEEEeCCCChHHhhhcCH
Confidence 467889999999999999999999778899999999862223334466655 8886 58999999999975 45555543
Q ss_pred C--CCCCCCCCcEEEeCCC
Q 023897 87 L--PVHCLQRRTLIADVLS 103 (275)
Q Consensus 87 l--~~~~l~~~~iv~d~~s 103 (275)
= .. ++++.++++++-
T Consensus 221 ~~l~~--mk~ga~lVNtaR 237 (324)
T COG1052 221 EELAK--MKPGAILVNTAR 237 (324)
T ss_pred HHHHh--CCCCeEEEECCC
Confidence 2 44 889999999873
No 126
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=2.2e-07 Score=76.59 Aligned_cols=180 Identities=13% Similarity=0.078 Sum_probs=108.0
Q ss_pred CCCCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEE-EcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHH
Q 023897 5 SPSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRA-TSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLS 81 (275)
Q Consensus 5 ~~~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~-~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~ 81 (275)
....+..+.++|||+|+.|.+....-.+.++.... ..|++.. ..+...+.... +.+.. .+-.+++|+-+|...+.
T Consensus 4 ~~~~~~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~-d~~~~-ael~~~vfv~vpd~~~s 81 (289)
T COG5495 4 DGLRPARVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPL-DVAKS-AELLLLVFVDVPDALYS 81 (289)
T ss_pred cCccceeeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCcc-chhhC-hhhhceEEecchHHHHH
Confidence 33455668999999999999844333333333222 2344421 22222232211 11211 24468899999988666
Q ss_pred HHhhcCCCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCCcccc-ceeeeeeecCChHHHHHHH
Q 023897 82 EVLNSLPVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDF-AFVYEKVRIRDEATCSSFL 160 (275)
Q Consensus 82 ~v~~~l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~ 160 (275)
++.... . ..+|++++.+++..+. ..+...-..++.-.+.||.|-++...+..+.. ..++.... .|+..+..++
T Consensus 82 ~vaa~~-~--~rpg~iv~HcSga~~~--~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~e-aD~~g~ai~q 155 (289)
T COG5495 82 GVAATS-L--NRPGTIVAHCSGANGS--GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITE-ADDVGYAIVQ 155 (289)
T ss_pred HHHHhc-c--cCCCeEEEEccCCCch--hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeec-ccccccHHHH
Confidence 665543 1 4689999998875442 22333223345557889988777544443322 23333323 3666788899
Q ss_pred HHHHHcCCeEEEcChhHHHHHHHHhhhhHHHH
Q 023897 161 RIFESEGCKMLEMSCEEHDKVAAKSQFLTHTI 192 (275)
Q Consensus 161 ~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~ 192 (275)
++...+|++++.+.++..-.+++...|.-+++
T Consensus 156 ~la~emgg~~f~V~~~~r~lYHaaa~~asnf~ 187 (289)
T COG5495 156 SLALEMGGEPFCVREEARILYHAAAVHASNFI 187 (289)
T ss_pred HHHHHhCCCceeechhHHHHHHHHHHHhhccH
Confidence 99999999999999988888888655444433
No 127
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=98.71 E-value=9.2e-07 Score=77.44 Aligned_cols=147 Identities=12% Similarity=0.192 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCce--------------EecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 21 PFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGIS--------------FFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 21 ~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~--------------~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
.||+.+|..|+++|++|++++|++..+...+.|+. .++++++ ...+|+||+|||..++.++++.
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~--~~~~D~iiv~vKs~~~~~~l~~ 78 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARGEQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE--LPPADLVIITVKAYQTEEAAAL 78 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecHHHHHHHHHCCcEEEecCCcEEEcccccccChhh--cCCCCEEEEeccchhHHHHHHH
Confidence 37999999999999999999998543333333431 1223444 2689999999999999999999
Q ss_pred C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCCCcCC---ccccc-eeeeeeecCChHHHHHHHH
Q 023897 87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQNG---WKDFA-FVYEKVRIRDEATCSSFLR 161 (275)
Q Consensus 87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~---~~g~~-~~~~~~~~~~~~~~~~~~~ 161 (275)
+ +. +.++++|+.+.+--+ ..+.+.+.++.. +++.+.+..+....+++ ..+.. ..+..... +.+..+.+.+
T Consensus 79 l~~~--l~~~~~iv~~qNG~g-~~~~l~~~~~~~-~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~-~~~~~~~l~~ 153 (293)
T TIGR00745 79 LLPL--IGKNTKVLFLQNGLG-HEERLRELLPAR-RILGGVVTHGAVREEPGVVHHAGLGATKIGDYVG-ENEAVEALAE 153 (293)
T ss_pred hHhh--cCCCCEEEEccCCCC-CHHHHHHHhCcc-CEEEEEEEEeeEEcCCcEEEEeccccEEEecCCC-chHHHHHHHH
Confidence 9 77 777777765443222 234556655532 34333332222211100 01111 22221111 1245677888
Q ss_pred HHHHcCCeEEEcC
Q 023897 162 IFESEGCKMLEMS 174 (275)
Q Consensus 162 l~~~~G~~v~~~~ 174 (275)
+|+..|..+...+
T Consensus 154 ~l~~~~~~~~~~~ 166 (293)
T TIGR00745 154 LLNEAGIPAELHG 166 (293)
T ss_pred HHHhCCCCCEecc
Confidence 9998888766654
No 128
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.71 E-value=2.8e-07 Score=84.52 Aligned_cols=104 Identities=13% Similarity=0.170 Sum_probs=75.4
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~ 86 (275)
....++|||||+|++|+.+|+.++..|.+|.+||+++... ..++....+++++ ++.||+|++++|-. .+..++.+
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~---~~~~~~~~~l~el-l~~sDiVslh~Plt~~T~~li~~ 223 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP---LGNARQVGSLEEL-LAQSDVVSLHVPETPSTKNMIGA 223 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc---cCCceecCCHHHH-HhhCCEEEEcCCCChHHhhccCH
Confidence 4577899999999999999999999999999999875321 1234445688996 58999999999964 45556543
Q ss_pred C--CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897 87 L--PVHCLQRRTLIADVLSVKEYPRNVLLQVLP 117 (275)
Q Consensus 87 l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~ 117 (275)
- .. +++|.++++++--...-.+.+.+.+.
T Consensus 224 ~~l~~--mk~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 224 EELAL--MKPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred HHHhc--CCCCeEEEECCCCcccCHHHHHHHHH
Confidence 2 44 88999999987433222234444443
No 129
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.68 E-value=1.3e-07 Score=81.99 Aligned_cols=76 Identities=21% Similarity=0.359 Sum_probs=61.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHC--CCe-EEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQ--GHI-LRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~--g~~-V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
+|||+|||+|.||..++..+.+. +++ +.++|++++. ..+...+...+++.++++ .++|+|++|+|++...++..
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell-~~~DvVvi~a~~~~~~~~~~ 79 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELV-EDVDLVVECASVNAVEEVVP 79 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHh-cCCCEEEEcCChHHHHHHHH
Confidence 37999999999999999999876 355 4468998853 334456777778898864 89999999999998888877
Q ss_pred cC
Q 023897 86 SL 87 (275)
Q Consensus 86 ~l 87 (275)
.+
T Consensus 80 ~a 81 (265)
T PRK13304 80 KS 81 (265)
T ss_pred HH
Confidence 76
No 130
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=9.4e-08 Score=83.41 Aligned_cols=148 Identities=18% Similarity=0.222 Sum_probs=102.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hh--HHHH---cCceEecChHHHh--ccCCCEEEEecCch-hHH
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQ--LCHR---SGISFFSDKRAFL--EADNDVILISTSIL-SLS 81 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~--~a~~---~g~~~~~~~~~~~--~~~aD~iilavp~~-~~~ 81 (275)
.+.||.||++.||..|+....++|+.|++|+|+.. .. .+.+ ..+-...++++.+ ++..-.|++-|+.. .+.
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD 85 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVD 85 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHH
Confidence 46899999999999999999999999999999874 22 2222 2234456777653 25677888888775 466
Q ss_pred HHhhcC-CCCCCCCCcEEEeCCCCC-hhHHHHHHhhCCCCCceeecCCCCCCCCCcCCccccceeeeeeecCChHHHHHH
Q 023897 82 EVLNSL-PVHCLQRRTLIADVLSVK-EYPRNVLLQVLPEEMDVLCTHPMFGPESGQNGWKDFAFVYEKVRIRDEATCSSF 159 (275)
Q Consensus 82 ~v~~~l-~~~~l~~~~iv~d~~s~k-~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 159 (275)
..++++ ++ +.+|.+|+|-++.. .......++....+.-|+++- ++|.+ ++.+.-|.++.+ .+.+++..+
T Consensus 86 ~~I~~L~p~--LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~G-VSGGE---EGAR~GPSlMpG---g~~~Awp~i 156 (487)
T KOG2653|consen 86 QFIEELVPY--LEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSG-VSGGE---EGARYGPSLMPG---GSKEAWPHI 156 (487)
T ss_pred HHHHHHHhh--cCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecC-ccCcc---cccccCCccCCC---CChHHHHHH
Confidence 788888 88 99999999977543 233344444445567788753 34444 334455666543 367888888
Q ss_pred HHHHHHcC
Q 023897 160 LRIFESEG 167 (275)
Q Consensus 160 ~~l~~~~G 167 (275)
+.+|+.+-
T Consensus 157 k~ifq~ia 164 (487)
T KOG2653|consen 157 KDIFQKIA 164 (487)
T ss_pred HHHHHHHH
Confidence 88888654
No 131
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.67 E-value=6.6e-08 Score=87.49 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=72.3
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-----HHH
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-----LSE 82 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-----~~~ 82 (275)
....++|||||+|+||+.+|+.+...|++|.+||+..... .+.....+++++ +++||+|++++|-.. +..
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~----~~~~~~~~l~el-l~~aDiV~lh~Plt~~g~~~T~~ 187 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA----EGDGDFVSLERI-LEECDVISLHTPLTKEGEHPTRH 187 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc----ccCccccCHHHH-HhhCCEEEEeCcCCCCccccccc
Confidence 4466899999999999999999999999999999864311 121223578886 589999999999642 444
Q ss_pred Hhhc--CCCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897 83 VLNS--LPVHCLQRRTLIADVLSVKEYPRNVLLQVL 116 (275)
Q Consensus 83 v~~~--l~~~~l~~~~iv~d~~s~k~~~~~~l~~~l 116 (275)
++.+ +.. +++|+++++++-....-.+.+.+.+
T Consensus 188 li~~~~l~~--mk~gailIN~aRG~vVde~AL~~aL 221 (381)
T PRK00257 188 LLDEAFLAS--LRPGAWLINASRGAVVDNQALREAL 221 (381)
T ss_pred cCCHHHHhc--CCCCeEEEECCCCcccCHHHHHHHH
Confidence 4432 244 7899999998754332234444444
No 132
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.61 E-value=1.3e-07 Score=85.38 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=70.7
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchh-----HHH
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILS-----LSE 82 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-----~~~ 82 (275)
....++|||||+|+||+.+|+.|...|.+|.+||+..... ... ....+++++ +++||+|++++|-.. +..
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---~~~-~~~~~L~el-l~~sDiI~lh~PLt~~g~~~T~~ 187 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---GDE-GDFRSLDEL-VQEADILTFHTPLFKDGPYKTLH 187 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---ccc-cccCCHHHH-HhhCCEEEEeCCCCCCccccccc
Confidence 3567899999999999999999999999999999754211 111 123578886 589999999999543 333
Q ss_pred Hhh-cC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897 83 VLN-SL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL 116 (275)
Q Consensus 83 v~~-~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l 116 (275)
++. +. .. +++|+++++++--...-.+.+.+.+
T Consensus 188 li~~~~l~~--mk~gailIN~aRG~vVDe~AL~~aL 221 (378)
T PRK15438 188 LADEKLIRS--LKPGAILINACRGAVVDNTALLTCL 221 (378)
T ss_pred ccCHHHHhc--CCCCcEEEECCCchhcCHHHHHHHH
Confidence 432 22 44 7899999998743222223444444
No 133
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.60 E-value=4.3e-07 Score=71.92 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=69.3
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhH--HHHh
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSL--SEVL 84 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~--~~v~ 84 (275)
....+++.|+|+|.+|..+|+.|+..|.+|++++++|. ...|...|..+. +.+++ +..+|++|.+|....+ .+-+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a-~~~adi~vtaTG~~~vi~~e~~ 97 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEA-LRDADIFVTATGNKDVITGEHF 97 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHH-TTT-SEEEE-SSSSSSB-HHHH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHH-HhhCCEEEECCCCccccCHHHH
Confidence 34567899999999999999999999999999999994 456777888775 57776 5899999999887542 4555
Q ss_pred hcCCCCCCCCCcEEEeCCCCChhH-HHHHHh
Q 023897 85 NSLPVHCLQRRTLIADVLSVKEYP-RNVLLQ 114 (275)
Q Consensus 85 ~~l~~~~l~~~~iv~d~~s~k~~~-~~~l~~ 114 (275)
+. +++++++.++++...++ ++.+.+
T Consensus 98 ~~-----mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 98 RQ-----MKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HH-----S-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HH-----hcCCeEEeccCcCceeEeeccccc
Confidence 55 57799999999866543 234443
No 134
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.59 E-value=2.1e-07 Score=82.45 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=74.4
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~ 86 (275)
....++|||||+|.+|+.+|+.++..|.+|.+|||..... ..+... .+++++ +++||+|++++|-. .+..++.+
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---~~~~~~-~~l~el-l~~sDvv~lh~Plt~~T~~li~~ 216 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---NEEYER-VSLEEL-LKTSDIISIHAPLNEKTKNLIAY 216 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---ccCcee-ecHHHH-hhcCCEEEEeCCCCchhhcccCH
Confidence 4577899999999999999999999999999999864211 123333 478886 58999999999964 34455543
Q ss_pred C--CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCC
Q 023897 87 L--PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEE 119 (275)
Q Consensus 87 l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~ 119 (275)
= .. ++++.++++++--...-.+.+.+.|..+
T Consensus 217 ~~~~~--Mk~~a~lIN~aRG~vVDe~AL~~AL~~g 249 (311)
T PRK08410 217 KELKL--LKDGAILINVGRGGIVNEKDLAKALDEK 249 (311)
T ss_pred HHHHh--CCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 2 44 8899999998743222223454544433
No 135
>PLN02306 hydroxypyruvate reductase
Probab=98.56 E-value=1.3e-06 Score=79.28 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=67.9
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHH-HCCCeEEEEcCChhhhHH---HHcC------------ceEecChHHHhccCCCEE
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMI-KQGHILRATSRTDHSQLC---HRSG------------ISFFSDKRAFLEADNDVI 71 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~-~~g~~V~~~dr~~~~~~a---~~~g------------~~~~~~~~~~~~~~aD~i 71 (275)
....++|||||+|.+|+.+|+.+. ..|.+|.+||+....... ...| .....+++++ +++||+|
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~el-l~~sDiV 240 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEV-LREADVI 240 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHH-HhhCCEE
Confidence 456789999999999999999986 678999999987631111 1111 1223578896 5899999
Q ss_pred EEecCch-hHHHHhhcC--CCCCCCCCcEEEeCCC
Q 023897 72 LISTSIL-SLSEVLNSL--PVHCLQRRTLIADVLS 103 (275)
Q Consensus 72 ilavp~~-~~~~v~~~l--~~~~l~~~~iv~d~~s 103 (275)
++++|-. .+..++..= .. +++|.++++++-
T Consensus 241 ~lh~Plt~~T~~lin~~~l~~--MK~ga~lIN~aR 273 (386)
T PLN02306 241 SLHPVLDKTTYHLINKERLAL--MKKEAVLVNASR 273 (386)
T ss_pred EEeCCCChhhhhhcCHHHHHh--CCCCeEEEECCC
Confidence 9999954 455555432 44 899999999873
No 136
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.54 E-value=2.5e-07 Score=82.05 Aligned_cols=102 Identities=11% Similarity=0.173 Sum_probs=72.2
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~ 86 (275)
....++|||||+|.+|+.+|+.++..|.+|.+|++...... ... ..+++++ +++||+|++++|-. .+..++.+
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~----~~~-~~~l~el-l~~sDiv~l~~Plt~~T~~li~~ 217 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVC----REG-YTPFEEV-LKQADIVTLHCPLTETTQNLINA 217 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccccc----ccc-cCCHHHH-HHhCCEEEEcCCCChHHhcccCH
Confidence 45678999999999999999999999999999998642110 111 3478886 58999999999953 45555543
Q ss_pred C--CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897 87 L--PVHCLQRRTLIADVLSVKEYPRNVLLQVLP 117 (275)
Q Consensus 87 l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~ 117 (275)
= .. +++|.++++++--.....+.+.+.+.
T Consensus 218 ~~l~~--mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 218 ETLAL--MKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred HHHHh--CCCCeEEEECCCccccCHHHHHHHHH
Confidence 2 44 88999999987433222334544443
No 137
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.51 E-value=3.1e-06 Score=72.85 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=105.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh-c
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN-S 86 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~-~ 86 (275)
+.++|+|||+|.=|.+=|..|+++|.+|++--|... -+.|.+.|..+. +.+++ ++++|+|++-+|+..-.++.+ +
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea-~k~ADvim~L~PDe~q~~vy~~~ 94 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEA-AKRADVVMILLPDEQQKEVYEKE 94 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHH-hhcCCEEEEeCchhhHHHHHHHH
Confidence 567999999999999999999999999887766653 467888899875 56675 599999999999999999998 7
Q ss_pred C-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceeecCCCCCCCC-Cc--CCccccceeeeeeecCChHHHHHHHHH
Q 023897 87 L-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLCTHPMFGPES-GQ--NGWKDFAFVYEKVRIRDEATCSSFLRI 162 (275)
Q Consensus 87 l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~-~~--~~~~g~~~~~~~~~~~~~~~~~~~~~l 162 (275)
+ |. +++|..+.=.-+.. .....+. -|.++.++=..|=.+... .. ..-.|.|.++.-..-.+..+.+.....
T Consensus 95 I~p~--Lk~G~aL~FaHGfN-ihf~~i~--ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~ 169 (338)
T COG0059 95 IAPN--LKEGAALGFAHGFN-IHFGLIV--PPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAY 169 (338)
T ss_pred hhhh--hcCCceEEeccccc-eecceec--CCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHH
Confidence 7 88 88887654211111 0011111 134455554444222211 00 011467776654322355677888888
Q ss_pred HHHcCC---eEEEcC
Q 023897 163 FESEGC---KMLEMS 174 (275)
Q Consensus 163 ~~~~G~---~v~~~~ 174 (275)
.+.+|+ -++..+
T Consensus 170 AkgiGg~RaGvieTT 184 (338)
T COG0059 170 AKGIGGTRAGVIETT 184 (338)
T ss_pred HHhcCCCccceEeee
Confidence 999883 355543
No 138
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.50 E-value=3.4e-07 Score=81.32 Aligned_cols=101 Identities=10% Similarity=0.126 Sum_probs=72.0
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhc
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~ 86 (275)
....++|||||+|.+|+.+|+.++..|.+|.+|+|..... ... ..+++++ +++||+|++++|-. .+..++.+
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-----~~~-~~~l~el-l~~sDiv~l~lPlt~~T~~li~~ 217 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-----RPD-RLPLDEL-LPQVDALTLHCPLTEHTRHLIGA 217 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-----ccc-ccCHHHH-HHhCCEEEECCCCChHHhcCcCH
Confidence 4567899999999999999999999999999999864211 111 2378886 58999999999964 45555543
Q ss_pred C--CCCCCCCCcEEEeCCCCChhHHHHHHhhCC
Q 023897 87 L--PVHCLQRRTLIADVLSVKEYPRNVLLQVLP 117 (275)
Q Consensus 87 l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~ 117 (275)
- .. ++++.++++++--.....+.+.+.+.
T Consensus 218 ~~~~~--mk~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 218 RELAL--MKPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred HHHhc--CCCCeEEEECCCccccCHHHHHHHHH
Confidence 2 44 88999999987432222234444443
No 139
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.47 E-value=1.4e-06 Score=76.98 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=61.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhhH--HHH---------c--CceEecChHHHhccCCCEEEEecCc
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQL--CHR---------S--GISFFSDKRAFLEADNDVILISTSI 77 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~--a~~---------~--g~~~~~~~~~~~~~~aD~iilavp~ 77 (275)
|||+|||+|.||..+|..++..|+ +|+++|+++.... +.+ . .+..+++.++ + .++|+||+|++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~-~~aDiVIitag~ 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-T-ANSDIVVITAGL 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-h-CCCCEEEEcCCC
Confidence 699999999999999999999886 8999999765322 111 0 1234567776 3 899999999883
Q ss_pred ----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897 78 ----------------LSLSEVLNSL-PVHCLQRRTLIADVLS 103 (275)
Q Consensus 78 ----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s 103 (275)
..+.++++++ ++ .++.+++.+++
T Consensus 80 p~~~~~sR~~l~~~N~~iv~~i~~~I~~~---~p~~~iIv~tN 119 (305)
T TIGR01763 80 PRKPGMSREDLLSMNAGIVREVTGRIMEH---SPNPIIVVVSN 119 (305)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecC
Confidence 2345566666 43 35556665554
No 140
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.46 E-value=1.4e-06 Score=77.09 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=59.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhhH--HHH-------cC--ce--EecChHHHhccCCCEEEEecC
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQL--CHR-------SG--IS--FFSDKRAFLEADNDVILISTS 76 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~--a~~-------~g--~~--~~~~~~~~~~~~aD~iilavp 76 (275)
++||+|||+|.||..+|..++..|+ +|+++|++++... +.+ .+ .+ .+++.++ +++||+||+++.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~--~~~aDiVii~~~ 79 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED--IAGSDVVVITAG 79 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH--HCCCCEEEECCC
Confidence 4799999999999999999999876 9999999874321 111 11 12 2355654 389999999963
Q ss_pred --c--------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897 77 --I--------------LSLSEVLNSL-PVHCLQRRTLIADVLS 103 (275)
Q Consensus 77 --~--------------~~~~~v~~~l-~~~~l~~~~iv~d~~s 103 (275)
. ..+.+++..+ +. . ++.+++.+++
T Consensus 80 ~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~--~-~~~~viv~tN 120 (307)
T PRK06223 80 VPRKPGMSRDDLLGINAKIMKDVAEGIKKY--A-PDAIVIVVTN 120 (307)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHH--C-CCeEEEEecC
Confidence 2 2356666666 44 3 4455555443
No 141
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=98.46 E-value=4.3e-05 Score=65.01 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=94.4
Q ss_pred CceEecChHHHhccCCCEEEEecCchh-HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCC
Q 023897 53 GISFFSDKRAFLEADNDVILISTSILS-LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMF 129 (275)
Q Consensus 53 g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~ 129 (275)
|+++++|-.|+ ++++|++|+-+|... ..++++++ ++ +++|.+++..+++....+..+-+.++ .++.+.+.||-+
T Consensus 126 GvkVtsDD~EA-v~~aei~I~ftPfG~~q~~Iikkii~~--lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa 202 (340)
T TIGR01723 126 GLKVTTDDREA-VEDADIIITWLPKGNKQPDIIKKFIDD--IPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPGC 202 (340)
T ss_pred CceEecCcHHH-hcCCCEEEEEcCCCCCchHHHHHHHhh--CCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCCC
Confidence 55677776776 599999999999876 57888888 87 99999999999888765555444444 567888999977
Q ss_pred CCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHH
Q 023897 130 GPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHT 191 (275)
Q Consensus 130 g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~ 191 (275)
-|+. .++.++... -.+++.++++.+|.++.|..+|.++++-..-+.-..|.++..
T Consensus 203 VPgt-----~~q~Yi~eg--yAtEEqI~klveL~~sa~k~ay~~PA~LvspV~DMgS~VTAv 257 (340)
T TIGR01723 203 VPEM-----KGQVYIAEG--YASEEAVNKLYELGKKARGKAFKMPANLLGPVCDMCSAVTAI 257 (340)
T ss_pred CCCC-----CCceEeecc--cCCHHHHHHHHHHHHHhCCCeeecchhhccchhhHHHHHHHH
Confidence 7764 344455432 247899999999999999999999865333333344444443
No 142
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.44 E-value=1.1e-06 Score=66.45 Aligned_cols=75 Identities=23% Similarity=0.448 Sum_probs=61.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHC--CCeEE-EEcCChhh--hHHHHcCceEecChHHHhcc--CCCEEEEecCchhHHHHh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQ--GHILR-ATSRTDHS--QLCHRSGISFFSDKRAFLEA--DNDVILISTSILSLSEVL 84 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~--g~~V~-~~dr~~~~--~~a~~~g~~~~~~~~~~~~~--~aD~iilavp~~~~~~v~ 84 (275)
+||+|||+|.+|......+.+. +.+|. ++|++++. ..+.+.|+..+++.++++ + +.|+|++|+|+....+++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~D~V~I~tp~~~h~~~~ 79 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELL-ADEDVDAVIIATPPSSHAEIA 79 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHH-HHTTESEEEEESSGGGHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHH-HhhcCCEEEEecCCcchHHHH
Confidence 5899999999999999999887 35655 68999853 346778999999999864 4 689999999999887777
Q ss_pred hcC
Q 023897 85 NSL 87 (275)
Q Consensus 85 ~~l 87 (275)
...
T Consensus 80 ~~~ 82 (120)
T PF01408_consen 80 KKA 82 (120)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 143
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.44 E-value=1.3e-06 Score=77.13 Aligned_cols=107 Identities=19% Similarity=0.299 Sum_probs=76.4
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhh
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLN 85 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~ 85 (275)
.+..++|+|+|+|+||..+|+.|...|..+..+.|++. .+.+.+.+.. ..+.++. +.++|+|++|.|-. .+..+++
T Consensus 159 ~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~-~~~sD~ivv~~pLt~~T~~liN 236 (336)
T KOG0069|consen 159 DLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEEL-LANSDVIVVNCPLTKETRHLIN 236 (336)
T ss_pred cccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHH-HhhCCEEEEecCCCHHHHHHhh
Confidence 45778999999999999999999998856666777664 4455555554 3466775 58999999999975 4566665
Q ss_pred cC--CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC
Q 023897 86 SL--PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE 118 (275)
Q Consensus 86 ~l--~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~ 118 (275)
+- .. ++++.++++++--+-.--+.+.+.+++
T Consensus 237 k~~~~~--mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 237 KKFIEK--MKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred HHHHHh--cCCCeEEEeccccccccHHHHHHHHhc
Confidence 33 44 789999998874333223455555543
No 144
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=98.42 E-value=5.9e-05 Score=64.08 Aligned_cols=129 Identities=15% Similarity=0.227 Sum_probs=93.8
Q ss_pred CceEecChHHHhccCCCEEEEecCchh-HHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCC-CCCceeecCCCC
Q 023897 53 GISFFSDKRAFLEADNDVILISTSILS-LSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLP-EEMDVLCTHPMF 129 (275)
Q Consensus 53 g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~-~~~~~v~~hP~~ 129 (275)
|+++++|-.|+ ++++|++|+-+|... ...+++++ ++ +++|.+|+..+++....+..+-+.++ .++.+.+.||-+
T Consensus 128 GvkVtsDD~EA-vk~aei~I~ftPfG~~t~~Iikki~~~--ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREA-VADADIVITWLPKGGMQPDIIEKFADD--IKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHH-hcCCCEEEEecCCCCCchHHHHHHHhh--CCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 55677776675 599999999999876 57888888 87 99999999999888766554433343 567888999987
Q ss_pred CCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHH
Q 023897 130 GPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHT 191 (275)
Q Consensus 130 g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~ 191 (275)
-|+.. |+.++-. .-.+++.++++.+|.++.|..+|.++++-..-+.-..|.++..
T Consensus 205 VPgt~-----Gq~~i~e--gyAtEEqI~klveL~~sa~k~ay~~PA~lvspV~DMgS~VTAv 259 (342)
T PRK00961 205 VPEMK-----GQVYIAE--GYADEEAVEKLYEIGKKARGNAFKMPANLIGPVCDMCSAVTAI 259 (342)
T ss_pred CCCCC-----Cceeccc--ccCCHHHHHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHHH
Confidence 77653 4433322 1247889999999999999999999865433333344444443
No 145
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.41 E-value=2.6e-06 Score=75.72 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=70.6
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhhH--HH----H---cC----ceEecChHHHhccCCCEEEE
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQL--CH----R---SG----ISFFSDKRAFLEADNDVILI 73 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~--a~----~---~g----~~~~~~~~~~~~~~aD~iil 73 (275)
+...+||+|||+|.||.++|..++..|+ +|+++|++++... +. . .+ +..+++.++ +++||+||+
T Consensus 3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~--l~~aDiVI~ 80 (321)
T PTZ00082 3 MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYED--IAGSDVVIV 80 (321)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHH--hCCCCEEEE
Confidence 4456799999999999999999999995 8999999885321 11 1 11 233456655 389999999
Q ss_pred ecCc---------------------hhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC-CCceeecC
Q 023897 74 STSI---------------------LSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE-EMDVLCTH 126 (275)
Q Consensus 74 avp~---------------------~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~-~~~~v~~h 126 (275)
+.-. ..+.++.+.+ .+ .++.+++.+++.-......+.+..+. ..++++.+
T Consensus 81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~---~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKY---CPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 7621 1245566666 43 34545555554333333444444321 23566654
No 146
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.38 E-value=1.4e-06 Score=76.00 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=61.3
Q ss_pred CCCCCCeEEEEcCC-hHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 7 SSSSTLKIGIIGFG-PFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 7 ~~~~~~~I~IIG~G-~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
.....++|+|||.| .||..||..|.++|+.|++|++.. .+++++ +++||+||.|++.... +.
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t-------------~~l~e~-~~~ADIVIsavg~~~~---v~ 217 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS-------------TDAKAL-CRQADIVVAAVGRPRL---ID 217 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC-------------CCHHHH-HhcCCEEEEecCChhc---cc
Confidence 34567899999995 999999999999999999998763 256665 4899999999997632 22
Q ss_pred cCCCCCCCCCcEEEeCCC
Q 023897 86 SLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~s 103 (275)
.. . +++|++++|++-
T Consensus 218 ~~-~--ik~GaiVIDvgi 232 (301)
T PRK14194 218 AD-W--LKPGAVVIDVGI 232 (301)
T ss_pred Hh-h--ccCCcEEEEecc
Confidence 21 2 688999999873
No 147
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.37 E-value=5.4e-06 Score=68.76 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=62.9
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hh-HHHHcCceEecChHHHhccCCCEEEEecCchh-HHHH
Q 023897 7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQ-LCHRSGISFFSDKRAFLEADNDVILISTSILS-LSEV 83 (275)
Q Consensus 7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~-~~~v 83 (275)
.+...++|+|+|+|+||+.+|+.|.+.|++|+++|++++ .. .....|....+. +++...++|+++-|..... ..+.
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~ 102 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDT 102 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHH
Confidence 456778999999999999999999999999999999985 33 333446665444 4433347999997765543 3455
Q ss_pred hhcCCCCCCCCCcEEEeCCC
Q 023897 84 LNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 84 ~~~l~~~~l~~~~iv~d~~s 103 (275)
+.++ + ..+|++.++
T Consensus 103 ~~~l-----~-~~~v~~~AN 116 (200)
T cd01075 103 IPQL-----K-AKAIAGAAN 116 (200)
T ss_pred HHHc-----C-CCEEEECCc
Confidence 5554 2 246666554
No 148
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.36 E-value=2.2e-06 Score=76.02 Aligned_cols=92 Identities=20% Similarity=0.287 Sum_probs=67.1
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChh-h-hHHHHcCceEe--cChHHHhccCCCEEEEecCchhHHHH
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDH-S-QLCHRSGISFF--SDKRAFLEADNDVILISTSILSLSEV 83 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~-~-~~a~~~g~~~~--~~~~~~~~~~aD~iilavp~~~~~~v 83 (275)
...++|+|||+|.||..+++.|...| .+|++++|+++ . ..+.+.|.... .+..+. +.++|+||.|+|.....++
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~-l~~aDvVi~at~~~~~~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLEL-LNEADVVISATGAPHYAKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHH-HhcCCEEEECCCCCchHHH
Confidence 35689999999999999999999866 68999999985 2 45666666432 234554 4789999999998766444
Q ss_pred hhcC-CCCCCCCCcEEEeCC
Q 023897 84 LNSL-PVHCLQRRTLIADVL 102 (275)
Q Consensus 84 ~~~l-~~~~l~~~~iv~d~~ 102 (275)
+... .. ...++.+++|++
T Consensus 255 ~~~~~~~-~~~~~~~viDla 273 (311)
T cd05213 255 VERAMKK-RSGKPRLIVDLA 273 (311)
T ss_pred HHHHHhh-CCCCCeEEEEeC
Confidence 4444 22 023567899987
No 149
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.34 E-value=2.2e-06 Score=65.29 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=60.8
Q ss_pred eEEEEc-CChHHHHHHHHHHHC-CCeEEEE-cCChhh-h-HHHHcC-ce------Ee-cChHHHhccCCCEEEEecCchh
Q 023897 13 KIGIIG-FGPFGQFLAKTMIKQ-GHILRAT-SRTDHS-Q-LCHRSG-IS------FF-SDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 13 ~I~IIG-~G~mG~sla~~L~~~-g~~V~~~-dr~~~~-~-~a~~~g-~~------~~-~~~~~~~~~~aD~iilavp~~~ 79 (275)
||+|+| .|.+|..++..|.+. ++++..+ +++.+. + .....+ +. .. .+++ ..++|+||+|+|++.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~DvV~~~~~~~~ 77 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFE---ELAVDIVFLALPHGV 77 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChh---hcCCCEEEEcCCcHH
Confidence 689999 599999999999985 7777765 554321 1 121111 11 11 1221 148999999999999
Q ss_pred HHHHhhcC-CCCCCCCCcEEEeCCCCC
Q 023897 80 LSEVLNSL-PVHCLQRRTLIADVLSVK 105 (275)
Q Consensus 80 ~~~v~~~l-~~~~l~~~~iv~d~~s~k 105 (275)
..+++..+ +. +.+|++++|+++.-
T Consensus 78 ~~~~~~~~~~~--~~~g~~viD~s~~~ 102 (122)
T smart00859 78 SKEIAPLLPKA--AEAGVKVIDLSSAF 102 (122)
T ss_pred HHHHHHHHHhh--hcCCCEEEECCccc
Confidence 88877655 44 67899999998753
No 150
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.33 E-value=4.3e-06 Score=74.38 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=69.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChhhh--HHHH-------cC----ceEecChHHHhccCCCEEEEec
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDHSQ--LCHR-------SG----ISFFSDKRAFLEADNDVILIST 75 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~~~--~a~~-------~g----~~~~~~~~~~~~~~aD~iilav 75 (275)
..+||+|||+|.||.+++..+...| .+|.++|++++.. .+.+ .+ +..+++.++ +++||+||++.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~--l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYED--IKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHH--hCCCCEEEECC
Confidence 4579999999999999999999988 6899999987431 1111 11 123356664 38999999998
Q ss_pred --Cc--------------hhHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC-CCceeecC
Q 023897 76 --SI--------------LSLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE-EMDVLCTH 126 (275)
Q Consensus 76 --p~--------------~~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~-~~~~v~~h 126 (275)
|. ..+.++.+.+ .+ .++.+++.+++.-......+.+..+. ..++++.+
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~---~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKY---CPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 32 2355666666 43 45555555544323333344443221 23566544
No 151
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.29 E-value=4.6e-06 Score=65.21 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=46.9
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH-------c--CceEecChHHHhccCCCEEEEecCc
Q 023897 12 LKIGIIGF-GPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR-------S--GISFFSDKRAFLEADNDVILISTSI 77 (275)
Q Consensus 12 ~~I~IIG~-G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~-------~--g~~~~~~~~~~~~~~aD~iilavp~ 77 (275)
|||+|||+ |.+|+++|..|...+. ++.++|+++... .+.+ . ......+..+. ++++|+|+++...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~-~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEA-LKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGG-GTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccc-cccccEEEEeccc
Confidence 79999999 9999999999999875 899999997421 2211 1 12333333443 4899999999744
No 152
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.29 E-value=3.5e-06 Score=77.76 Aligned_cols=92 Identities=10% Similarity=0.152 Sum_probs=70.2
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh-
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN- 85 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~- 85 (275)
....++|+|||+|.+|..+|+.++..|.+|+++++++.. ..+...|+.. .+++++ ++.+|+|++|+... .++.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leel-l~~ADIVI~atGt~---~iI~~ 325 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDV-VETADIFVTATGNK---DIITL 325 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHH-HhcCCEEEECCCcc---cccCH
Confidence 456789999999999999999999999999999998753 3445567754 367775 58999999998643 3332
Q ss_pred cC-CCCCCCCCcEEEeCCCCCh
Q 023897 86 SL-PVHCLQRRTLIADVLSVKE 106 (275)
Q Consensus 86 ~l-~~~~l~~~~iv~d~~s~k~ 106 (275)
+. .. ++++.++++++-...
T Consensus 326 e~~~~--MKpGAiLINvGr~d~ 345 (476)
T PTZ00075 326 EHMRR--MKNNAIVGNIGHFDN 345 (476)
T ss_pred HHHhc--cCCCcEEEEcCCCch
Confidence 22 33 788999999886543
No 153
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.23 E-value=5.4e-06 Score=63.05 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=60.2
Q ss_pred eEEEEc-CChHHHHHHHHHHHCC-Ce-EEEEcCCh-h-hhHHHHc----C---ceEec-ChHHHhccCCCEEEEecCchh
Q 023897 13 KIGIIG-FGPFGQFLAKTMIKQG-HI-LRATSRTD-H-SQLCHRS----G---ISFFS-DKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 13 ~I~IIG-~G~mG~sla~~L~~~g-~~-V~~~dr~~-~-~~~a~~~----g---~~~~~-~~~~~~~~~aD~iilavp~~~ 79 (275)
||+||| +|.+|+.+.+.|.+.- ++ +.+++++. . ....... + ..+.. +.++ +.++|+||+|+|...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Dvvf~a~~~~~ 78 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEE--LSDVDVVFLALPHGA 78 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHH--HTTESEEEE-SCHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhH--hhcCCEEEecCchhH
Confidence 799999 8999999999999953 35 44566665 2 2222221 1 12322 4444 389999999999998
Q ss_pred HHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897 80 LSEVLNSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 80 ~~~v~~~l~~~~l~~~~iv~d~~s~ 104 (275)
..++...+ +.+|..++|.++.
T Consensus 79 ~~~~~~~~----~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 79 SKELAPKL----LKAGIKVIDLSGD 99 (121)
T ss_dssp HHHHHHHH----HHTTSEEEESSST
T ss_pred HHHHHHHH----hhCCcEEEeCCHH
Confidence 88888887 4568899998864
No 154
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.22 E-value=6.7e-06 Score=71.83 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=61.3
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEc-CChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATS-RTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~d-r~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
....++|+||| .|.||..||..|.++|+.|++|+ |++ +++++ +++||+||.|++... .+.
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~--------------~l~e~-~~~ADIVIsavg~~~---~v~ 216 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR--------------DLPAV-CRRADILVAAVGRPE---MVK 216 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC--------------CHHHH-HhcCCEEEEecCChh---hcc
Confidence 45678999999 99999999999999999999995 653 34564 489999999999865 222
Q ss_pred cCCCCCCCCCcEEEeCCCC
Q 023897 86 SLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~s~ 104 (275)
.. . +++|++++|++..
T Consensus 217 ~~-~--lk~GavVIDvGin 232 (296)
T PRK14188 217 GD-W--IKPGATVIDVGIN 232 (296)
T ss_pred hh-e--ecCCCEEEEcCCc
Confidence 22 2 6889999999853
No 155
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.21 E-value=4.5e-06 Score=73.65 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=52.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHC-CCeEEE-EcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQ-GHILRA-TSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL 84 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~-g~~V~~-~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~ 84 (275)
+++||+|||+|+||...+..+.+. +.++.+ +++++........+.....+..+. ..+.|+|++|+|.....+..
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~-l~~iDVViIctPs~th~~~~ 77 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKH-LDDVDVLILCMGSATDIPEQ 77 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHh-ccCCCEEEEcCCCccCHHHH
Confidence 358999999999999999999876 678775 788862222223344344566564 47899999999986544333
No 156
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.19 E-value=1.7e-05 Score=72.71 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh-c
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN-S 86 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~-~ 86 (275)
....+|+|+|+|.+|..+|..++..|.+|+++|+++.. ..+...|... .+.+++ ++.+|+||.|+.... ++. +
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~ea-l~~aDVVI~aTG~~~---vI~~~ 284 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEA-AELGDIFVTATGNKD---VITAE 284 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHH-HhCCCEEEECCCCHH---HHHHH
Confidence 35678999999999999999999999999999999853 4455557764 356775 589999999987543 232 2
Q ss_pred C-CCCCCCCCcEEEeCCCCCh
Q 023897 87 L-PVHCLQRRTLIADVLSVKE 106 (275)
Q Consensus 87 l-~~~~l~~~~iv~d~~s~k~ 106 (275)
. .. +++|.++++++....
T Consensus 285 ~~~~--mK~GailiNvG~~d~ 303 (425)
T PRK05476 285 HMEA--MKDGAILANIGHFDN 303 (425)
T ss_pred HHhc--CCCCCEEEEcCCCCC
Confidence 2 33 688999999886554
No 157
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=98.18 E-value=1.2e-05 Score=70.23 Aligned_cols=93 Identities=19% Similarity=0.176 Sum_probs=69.4
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChh---hhHHHHcCceE-ecChHHHhc----cCCCEEEEecCch
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDH---SQLCHRSGISF-FSDKRAFLE----ADNDVILISTSIL 78 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~---~~~a~~~g~~~-~~~~~~~~~----~~aD~iilavp~~ 78 (275)
+.++||+|||+|.+|+.+...+.+. +.++. ++|++++ .+.+.+.|+.. +++.++++. .+.|+||+++|..
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG 81 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence 4568999999999999988777764 45665 5788874 24677788865 467887542 3579999999998
Q ss_pred hHHHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897 79 SLSEVLNSLPVHCLQRRTLIADVLSVK 105 (275)
Q Consensus 79 ~~~~v~~~l~~~~l~~~~iv~d~~s~k 105 (275)
...+..... ...|..++|.++..
T Consensus 82 ~H~e~a~~a----~eaGk~VID~sPA~ 104 (302)
T PRK08300 82 AHVRHAAKL----REAGIRAIDLTPAA 104 (302)
T ss_pred HHHHHHHHH----HHcCCeEEECCccc
Confidence 887777766 45578888876543
No 158
>PLN02494 adenosylhomocysteinase
Probab=98.18 E-value=1.5e-05 Score=73.47 Aligned_cols=89 Identities=12% Similarity=0.175 Sum_probs=69.4
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhH--HHHhh
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSL--SEVLN 85 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~--~~v~~ 85 (275)
...++|+|+|+|.+|..+|+.++..|.+|+++++++. ...+...|.... +.+++ +..+|+||.++....+ .+.+.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEa-l~~ADVVI~tTGt~~vI~~e~L~ 329 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDV-VSEADIFVTTTGNKDIIMVDHMR 329 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHH-HhhCCEEEECCCCccchHHHHHh
Confidence 4568999999999999999999999999999999985 356666777654 56775 4899999998876532 33333
Q ss_pred cCCCCCCCCCcEEEeCCCC
Q 023897 86 SLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~s~ 104 (275)
. ++++.+++.++..
T Consensus 330 ---~--MK~GAiLiNvGr~ 343 (477)
T PLN02494 330 ---K--MKNNAIVCNIGHF 343 (477)
T ss_pred ---c--CCCCCEEEEcCCC
Confidence 3 6788999998763
No 159
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.16 E-value=2e-05 Score=71.85 Aligned_cols=90 Identities=11% Similarity=0.130 Sum_probs=69.0
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc-
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS- 86 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~- 86 (275)
....+|+|+|+|.+|..+|+.++..|.+|+++++++. ...+...|..+. +.+++ ++.+|++|.++....+ +..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leea-l~~aDVVItaTG~~~v---I~~~ 267 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEA-AKIGDIFITATGNKDV---IRGE 267 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHH-HhcCCEEEECCCCHHH---HHHH
Confidence 4677999999999999999999999999999999985 345566677554 45665 4899999999876443 221
Q ss_pred C-CCCCCCCCcEEEeCCCCC
Q 023897 87 L-PVHCLQRRTLIADVLSVK 105 (275)
Q Consensus 87 l-~~~~l~~~~iv~d~~s~k 105 (275)
. .. +++|.+++.++...
T Consensus 268 ~~~~--mK~GailiN~G~~~ 285 (406)
T TIGR00936 268 HFEN--MKDGAIVANIGHFD 285 (406)
T ss_pred HHhc--CCCCcEEEEECCCC
Confidence 2 33 78889999877543
No 160
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.16 E-value=8.8e-06 Score=72.05 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=47.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhhh--HHHHc--C------ce-EecChHHHhccCCCEEEEecCc
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHSQ--LCHRS--G------IS-FFSDKRAFLEADNDVILISTSI 77 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~~--~a~~~--g------~~-~~~~~~~~~~~~aD~iilavp~ 77 (275)
|||+|||+|.+|+++|..|+.+| .+|.++|+++... .+.+. . .. .+.+.++ +++||++|+|++.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~--l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD--CKGADVVVITAGA 77 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH--hCCCCEEEEccCC
Confidence 68999999999999999999999 5899999987421 11111 1 11 2345554 3899999999886
No 161
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.15 E-value=1.6e-05 Score=60.77 Aligned_cols=100 Identities=19% Similarity=0.317 Sum_probs=65.2
Q ss_pred CeEEEEcC-ChHHHHHHHHHHH-CCCeEE-EEcCChh-h---hHH-----HHcCceEecChHHHhccCCCEEEEecCchh
Q 023897 12 LKIGIIGF-GPFGQFLAKTMIK-QGHILR-ATSRTDH-S---QLC-----HRSGISFFSDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 12 ~~I~IIG~-G~mG~sla~~L~~-~g~~V~-~~dr~~~-~---~~a-----~~~g~~~~~~~~~~~~~~aD~iilavp~~~ 79 (275)
|||+|+|+ |+||+.+++.+.+ .++++. +++++++ . ... ...|+.++++++++ ...+|++|-.+-++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~-~~~~DVvIDfT~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEEL-LEEADVVIDFTNPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHH-TTH-SEEEEES-HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHh-cccCCEEEEcCChHH
Confidence 69999999 9999999999999 577866 4787762 1 111 23466788899886 577999999998887
Q ss_pred HHHHhhcCCCCCCCCCc-EEEeCCCCChhHHHHHHhhC
Q 023897 80 LSEVLNSLPVHCLQRRT-LIADVLSVKEYPRNVLLQVL 116 (275)
Q Consensus 80 ~~~v~~~l~~~~l~~~~-iv~d~~s~k~~~~~~l~~~l 116 (275)
+.+.++.. ++.+. +|+-+++....-.+.+++..
T Consensus 80 ~~~~~~~~----~~~g~~~ViGTTG~~~~~~~~l~~~a 113 (124)
T PF01113_consen 80 VYDNLEYA----LKHGVPLVIGTTGFSDEQIDELEELA 113 (124)
T ss_dssp HHHHHHHH----HHHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred hHHHHHHH----HhCCCCEEEECCCCCHHHHHHHHHHh
Confidence 77777776 22233 44444444444445566543
No 162
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.15 E-value=1.7e-05 Score=73.22 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=48.8
Q ss_pred CeEEEEcCChHHHHHHH--HH----HHCCCeEEEEcCChhh-hHH--------HHc----CceEecChHHHhccCCCEEE
Q 023897 12 LKIGIIGFGPFGQFLAK--TM----IKQGHILRATSRTDHS-QLC--------HRS----GISFFSDKRAFLEADNDVIL 72 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~--~L----~~~g~~V~~~dr~~~~-~~a--------~~~----g~~~~~~~~~~~~~~aD~ii 72 (275)
+||+|||+|.||.+++. .+ ...|++|.+||++++. +.. ... .+..+++..++ +++||+||
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea-l~~AD~Vi 79 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREA-LDGADFVI 79 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH-hcCCCEEE
Confidence 58999999999998766 34 3457899999999852 111 111 23467788776 48999999
Q ss_pred EecCchh
Q 023897 73 ISTSILS 79 (275)
Q Consensus 73 lavp~~~ 79 (275)
.++|...
T Consensus 80 ~ai~~~~ 86 (423)
T cd05297 80 NTIQVGG 86 (423)
T ss_pred EeeEecC
Confidence 9999643
No 163
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.15 E-value=1.2e-05 Score=71.06 Aligned_cols=61 Identities=21% Similarity=0.201 Sum_probs=44.8
Q ss_pred EEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhhHH--H---H----c----CceEecChHHHhccCCCEEEEecC
Q 023897 14 IGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQLC--H---R----S----GISFFSDKRAFLEADNDVILISTS 76 (275)
Q Consensus 14 I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~a--~---~----~----g~~~~~~~~~~~~~~aD~iilavp 76 (275)
|+|||+|.||..+|..++..|+ +|+++|++++...+ . . . .+..+++.++ +++||+||+++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~--l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED--IAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH--hCCCCEEEEecC
Confidence 6899999999999999998876 99999998753211 1 1 1 1123455555 389999999874
No 164
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.15 E-value=5.5e-06 Score=72.00 Aligned_cols=96 Identities=19% Similarity=0.174 Sum_probs=62.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHH---cCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHR---SGISFFSDKRAFLEADNDVILISTSILSLSEVL 84 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~---~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~ 84 (275)
..+++.|+|+|.+|.+++..|.+.|++|++++|+++. ..+.. .+.....+.++....++|+||.|+|.....++-
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~ 195 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNID 195 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCC
Confidence 3568999999999999999999999999999999742 22222 122112233332235799999999985322111
Q ss_pred h-cCCCCCCCCCcEEEeCCCCC
Q 023897 85 N-SLPVHCLQRRTLIADVLSVK 105 (275)
Q Consensus 85 ~-~l~~~~l~~~~iv~d~~s~k 105 (275)
. .++...++++.+++|+....
T Consensus 196 ~~~~~~~~l~~~~~v~D~~y~p 217 (270)
T TIGR00507 196 EPPVPAEKLKEGMVVYDMVYNP 217 (270)
T ss_pred CCCCCHHHcCCCCEEEEeccCC
Confidence 1 11111167788999987543
No 165
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.14 E-value=2.1e-05 Score=69.61 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=59.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhhh--HHHH---------cCceE-ecChHHHhccCCCEEEEecCc
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHSQ--LCHR---------SGISF-FSDKRAFLEADNDVILISTSI 77 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~~--~a~~---------~g~~~-~~~~~~~~~~~aD~iilavp~ 77 (275)
+||+|||+|.+|+++|..|...| ++|+++|++++.. .+.+ ..... ..+.++ +.++|+||+++..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~--l~~aDIVIitag~ 78 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD--CKDADIVVITAGA 78 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH--hCCCCEEEEccCC
Confidence 48999999999999999999998 5899999987532 2221 11122 234444 3899999999876
Q ss_pred h----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897 78 L----------------SLSEVLNSL-PVHCLQRRTLIADVLS 103 (275)
Q Consensus 78 ~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s 103 (275)
. .+.++...+ .+ .++.+++.+++
T Consensus 79 ~~~~g~~R~dll~~N~~i~~~~~~~i~~~---~~~~~vivvsN 118 (306)
T cd05291 79 PQKPGETRLDLLEKNAKIMKSIVPKIKAS---GFDGIFLVASN 118 (306)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEEecC
Confidence 2 245555566 43 34556665553
No 166
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.14 E-value=6.5e-06 Score=74.31 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=57.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChh-hhHHHHc---Cce-------EecChHHHhccCCCEEEEecCch
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDH-SQLCHRS---GIS-------FFSDKRAFLEADNDVILISTSIL 78 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~-~~~a~~~---g~~-------~~~~~~~~~~~~aD~iilavp~~ 78 (275)
+|||.|||+|.+|+..|..|++.| .+|++.||+.+ +..+... +++ -...+.++ +++.|+||.|.|+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~l-i~~~d~VIn~~p~~ 79 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVAL-IKDFDLVINAAPPF 79 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHH-HhcCCEEEEeCCch
Confidence 589999999999999999999998 89999999974 4433332 121 11234454 47889999999998
Q ss_pred hHHHHhhcC
Q 023897 79 SLSEVLNSL 87 (275)
Q Consensus 79 ~~~~v~~~l 87 (275)
....+++..
T Consensus 80 ~~~~i~ka~ 88 (389)
T COG1748 80 VDLTILKAC 88 (389)
T ss_pred hhHHHHHHH
Confidence 777766543
No 167
>PLN02602 lactate dehydrogenase
Probab=98.11 E-value=2.9e-05 Score=69.77 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=46.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH-------cC-ceEe--cChHHHhccCCCEEEEecC
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR-------SG-ISFF--SDKRAFLEADNDVILISTS 76 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~-------~g-~~~~--~~~~~~~~~~aD~iilavp 76 (275)
+||+|||+|.+|+++|..|...+. ++.++|++++.. .+.+ .+ ..+. .+.++ +++||+||++..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~--~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV--TAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH--hCCCCEEEECCC
Confidence 699999999999999999998875 799999987432 1111 11 2332 35555 389999999944
No 168
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=9.1e-06 Score=68.65 Aligned_cols=76 Identities=24% Similarity=0.297 Sum_probs=56.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhH--HHHcCceE----ecC---hHHHhccCCCEEEEecCchhHH
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQL--CHRSGISF----FSD---KRAFLEADNDVILISTSILSLS 81 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~--a~~~g~~~----~~~---~~~~~~~~aD~iilavp~~~~~ 81 (275)
|+|.|||+|.+|+++|+.|.+.|++|++.|++++ ... +.+.+..+ .++ +.++-+.++|+++.++..+...
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N 80 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVN 80 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHH
Confidence 7899999999999999999999999999999985 333 22344321 122 2332247899999999998766
Q ss_pred HHhhcC
Q 023897 82 EVLNSL 87 (275)
Q Consensus 82 ~v~~~l 87 (275)
.++-.+
T Consensus 81 ~i~~~l 86 (225)
T COG0569 81 SVLALL 86 (225)
T ss_pred HHHHHH
Confidence 666555
No 169
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.10 E-value=3.2e-05 Score=68.51 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=47.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH----c------CceEecChHHHhccCCCEEEEec
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR----S------GISFFSDKRAFLEADNDVILIST 75 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~----~------g~~~~~~~~~~~~~~aD~iilav 75 (275)
..+||+|||+|.+|+++|..|...|. ++.++|++++.. .+.+ . .+..+.+.++ + ++||+||++.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~-~~adivvita 79 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-T-ANSKVVIVTA 79 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-h-CCCCEEEECC
Confidence 35699999999999999999998875 799999987421 1111 0 1233356666 3 8999999965
Q ss_pred C
Q 023897 76 S 76 (275)
Q Consensus 76 p 76 (275)
.
T Consensus 80 G 80 (312)
T cd05293 80 G 80 (312)
T ss_pred C
Confidence 4
No 170
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.08 E-value=3.6e-05 Score=70.43 Aligned_cols=90 Identities=11% Similarity=0.163 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc-
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS- 86 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~- 86 (275)
....+|+|+|+|.+|..++..++..|.+|+++|+++. ...+...|.... +.+++ +..+|+||.|+....+.. ..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~-v~~aDVVI~atG~~~~i~--~~~ 275 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEA-VKEGDIFVTTTGNKDIIT--GEH 275 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHH-HcCCCEEEECCCCHHHHH--HHH
Confidence 3567999999999999999999999999999999985 567788888654 45564 478999999987654221 12
Q ss_pred CCCCCCCCCcEEEeCCCC
Q 023897 87 LPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s~ 104 (275)
+.. +++|.+++.++..
T Consensus 276 l~~--mk~GgilvnvG~~ 291 (413)
T cd00401 276 FEQ--MKDGAIVCNIGHF 291 (413)
T ss_pred Hhc--CCCCcEEEEeCCC
Confidence 233 6788899887743
No 171
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.08 E-value=1.2e-05 Score=71.44 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=60.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHH-CC-CeEEEEcCChhh--hHHHH---cC--ceEecChHHHhccCCCEEEEecCchhH
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIK-QG-HILRATSRTDHS--QLCHR---SG--ISFFSDKRAFLEADNDVILISTSILSL 80 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~-~g-~~V~~~dr~~~~--~~a~~---~g--~~~~~~~~~~~~~~aD~iilavp~~~~ 80 (275)
...+|+|||+|.+|..++..+.. .+ .+|++|+|+++. ..+.+ .| +....+++++ +.++|+|+.|+|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~a-v~~aDIVi~aT~s~-- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAA-VRQADIISCATLST-- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHH-HhcCCEEEEeeCCC--
Confidence 45789999999999999986665 34 689999999852 23332 24 4566788876 48999999988865
Q ss_pred HHHhhcCCCCCCCCCcEEEeCCC
Q 023897 81 SEVLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 81 ~~v~~~l~~~~l~~~~iv~d~~s 103 (275)
..++.. .. +++|+.+.-+++
T Consensus 201 ~pvl~~-~~--l~~g~~i~~ig~ 220 (314)
T PRK06141 201 EPLVRG-EW--LKPGTHLDLVGN 220 (314)
T ss_pred CCEecH-HH--cCCCCEEEeeCC
Confidence 222211 12 677775544443
No 172
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.08 E-value=4e-05 Score=66.10 Aligned_cols=99 Identities=22% Similarity=0.201 Sum_probs=67.4
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHC-CCeEEE-EcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 11 TLKIGIIGF-GPFGQFLAKTMIKQ-GHILRA-TSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 11 ~~~I~IIG~-G~mG~sla~~L~~~-g~~V~~-~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
+|||+|+|+ |.||+.++..+.+. ++++.+ +|++++. ......++..+++++++ +.++|+|+.++|++...+++..
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~l-l~~~DvVid~t~p~~~~~~~~~ 79 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAV-LADADVLIDFTTPEATLENLEF 79 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHh-ccCCCEEEECCCHHHHHHHHHH
Confidence 479999998 99999999998864 677664 7887642 22234466667888886 4689999999999888777776
Q ss_pred CCCCCCCCCc-EEEeCCCCChhHHHHHHh
Q 023897 87 LPVHCLQRRT-LIADVLSVKEYPRNVLLQ 114 (275)
Q Consensus 87 l~~~~l~~~~-iv~d~~s~k~~~~~~l~~ 114 (275)
. +..|. +++-..+......+.+.+
T Consensus 80 a----l~~G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 80 A----LEHGKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred H----HHcCCCEEEECCCCCHHHHHHHHH
Confidence 6 22333 333333333434445554
No 173
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.03 E-value=1.6e-05 Score=61.72 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=60.5
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCe-EEEEcCChhh--hHHHHc---Cc--eEecChHHHhccCCCEEEEecCchh
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHI-LRATSRTDHS--QLCHRS---GI--SFFSDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~-V~~~dr~~~~--~~a~~~---g~--~~~~~~~~~~~~~aD~iilavp~~~ 79 (275)
+....++.|||+|.+|++++..|.+.|.+ |++++|+.+. +.+... .+ ...+++.+. ..++|+||.|+|...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~-~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEA-LQEADIVINATPSGM 87 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHH-HHTESEEEE-SSTTS
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHH-HhhCCeEEEecCCCC
Confidence 45678999999999999999999999985 9999999853 334443 22 233455554 479999999999864
Q ss_pred H---HHHhhcCCCCCCCC-CcEEEeCC
Q 023897 80 L---SEVLNSLPVHCLQR-RTLIADVL 102 (275)
Q Consensus 80 ~---~~v~~~l~~~~l~~-~~iv~d~~ 102 (275)
. .+.+... .+ -.+++|++
T Consensus 88 ~~i~~~~~~~~-----~~~~~~v~Dla 109 (135)
T PF01488_consen 88 PIITEEMLKKA-----SKKLRLVIDLA 109 (135)
T ss_dssp TSSTHHHHTTT-----CHHCSEEEES-
T ss_pred cccCHHHHHHH-----Hhhhhceeccc
Confidence 2 2222222 11 14899986
No 174
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.03 E-value=3.4e-05 Score=65.96 Aligned_cols=91 Identities=13% Similarity=0.194 Sum_probs=65.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCC---CeEE-EEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQG---HILR-ATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g---~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
.+||+|||+|.||..++..|.+.+ +++. +++|+++........+...+++++++....|+|+-|-..+.+.+....
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~~ 81 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEG 81 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHHHHHHHHHH
Confidence 479999999999999999997643 4544 577776432222223667788998545789999999999999988888
Q ss_pred C-CCCCCCCCcEEEeCCCC
Q 023897 87 L-PVHCLQRRTLIADVLSV 104 (275)
Q Consensus 87 l-~~~~l~~~~iv~d~~s~ 104 (275)
+ .. ..+.++.+++..
T Consensus 82 iL~~---g~dlvv~SvGAL 97 (267)
T PRK13301 82 CLTA---GLDMIICSAGAL 97 (267)
T ss_pred HHhc---CCCEEEEChhHh
Confidence 7 31 345566666543
No 175
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.02 E-value=5.5e-05 Score=67.14 Aligned_cols=67 Identities=19% Similarity=0.264 Sum_probs=48.3
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH--------cCceEe-cChHHHhccCCCEEEEec
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR--------SGISFF-SDKRAFLEADNDVILIST 75 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~--------~g~~~~-~~~~~~~~~~aD~iilav 75 (275)
...+||+|||+|.+|+++|..|...|. ++.++|++++.. .+.+ ....+. .+.++ +++||+||++.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~--~~~adivIita 81 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD--CKDADLVVITA 81 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH--hCCCCEEEEec
Confidence 455799999999999999999999886 899999987431 1111 122332 34444 38999999985
Q ss_pred Cc
Q 023897 76 SI 77 (275)
Q Consensus 76 p~ 77 (275)
..
T Consensus 82 g~ 83 (315)
T PRK00066 82 GA 83 (315)
T ss_pred CC
Confidence 54
No 176
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.02 E-value=2.1e-05 Score=63.30 Aligned_cols=76 Identities=12% Similarity=0.262 Sum_probs=58.9
Q ss_pred CCCCCeEEEEcCChH-HHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIGFGPF-GQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG~G~m-G~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
+....+|.|||+|.| |..+++.|.+.|.+|++++|+. .++.+. +.++|+||.||+...+ +..
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-------------~~l~~~-l~~aDiVIsat~~~~i---i~~ 103 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-------------KNLKEH-TKQADIVIVAVGKPGL---VKG 103 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-------------hhHHHH-HhhCCEEEEcCCCCce---ecH
Confidence 456789999999997 8889999999999999999873 234443 4899999999998642 211
Q ss_pred CCCCCCCCCcEEEeCCC
Q 023897 87 LPVHCLQRRTLIADVLS 103 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s 103 (275)
.. ++++.+++|++.
T Consensus 104 -~~--~~~~~viIDla~ 117 (168)
T cd01080 104 -DM--VKPGAVVIDVGI 117 (168)
T ss_pred -HH--ccCCeEEEEccC
Confidence 12 567889999985
No 177
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.01 E-value=3.2e-05 Score=63.96 Aligned_cols=100 Identities=21% Similarity=0.353 Sum_probs=72.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHC--CC-eEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQ--GH-ILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~--g~-~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
|+|+|||+|.+|..+...+.+. .+ -+.+|||+.+. ......+....+++++.+ .+.|+++-|-.++++++...+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~-~~~DlvVEaAS~~Av~e~~~~ 79 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELI-AEVDLVVEAASPEAVREYVPK 79 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHh-hccceeeeeCCHHHHHHHhHH
Confidence 6899999999999999888765 34 46789999853 233334444447888864 899999999999999988877
Q ss_pred C-CCCCCCCCcEEEeCCCCCh-hHHHHHHhh
Q 023897 87 L-PVHCLQRRTLIADVLSVKE-YPRNVLLQV 115 (275)
Q Consensus 87 l-~~~~l~~~~iv~d~~s~k~-~~~~~l~~~ 115 (275)
+ .. ..+.++++++.... ...+.+.+.
T Consensus 80 ~L~~---g~d~iV~SVGALad~~l~erl~~l 107 (255)
T COG1712 80 ILKA---GIDVIVMSVGALADEGLRERLREL 107 (255)
T ss_pred HHhc---CCCEEEEechhccChHHHHHHHHH
Confidence 7 31 34678888875442 233444444
No 178
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.00 E-value=3.1e-05 Score=67.11 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=55.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHC-CCeEEE-EcCChhhh-HH--HHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQ-GHILRA-TSRTDHSQ-LC--HRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~-g~~V~~-~dr~~~~~-~a--~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
+|||+|||+|.||+.+++.+.+. +.++.+ ++++.... .. ...++..+++.+++ ..+.|+|+.|+|+....+...
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~~DvVve~t~~~~~~e~~~ 79 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDAL-PQRPDLVVECAGHAALKEHVV 79 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHh-ccCCCEEEECCCHHHHHHHHH
Confidence 47999999999999999999876 455544 44433211 11 12266778888875 467999999999988877777
Q ss_pred cC
Q 023897 86 SL 87 (275)
Q Consensus 86 ~l 87 (275)
..
T Consensus 80 ~a 81 (265)
T PRK13303 80 PI 81 (265)
T ss_pred HH
Confidence 66
No 179
>PRK04148 hypothetical protein; Provisional
Probab=97.99 E-value=4.5e-05 Score=58.64 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=65.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE-----ecChHHHhccCCCEEEEecCchhHHHH
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF-----FSDKRAFLEADNDVILISTSILSLSEV 83 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~-----~~~~~~~~~~~aD~iilavp~~~~~~v 83 (275)
+.+||..||+| .|.++|..|++.|++|++.|.++. .+.+.+.+..+ ++..-+ +-+++|+|--.=|+..+..-
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~-~y~~a~liysirpp~el~~~ 93 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLE-IYKNAKLIYSIRPPRDLQPF 93 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHH-HHhcCCEEEEeCCCHHHHHH
Confidence 34789999999 999999999999999999999995 55666666532 222223 24799999999998776655
Q ss_pred hhcC-CCCCCCCCcEEEeCCC
Q 023897 84 LNSL-PVHCLQRRTLIADVLS 103 (275)
Q Consensus 84 ~~~l-~~~~l~~~~iv~d~~s 103 (275)
+.++ .. +..+.++.-.++
T Consensus 94 ~~~la~~--~~~~~~i~~l~~ 112 (134)
T PRK04148 94 ILELAKK--INVPLIIKPLSG 112 (134)
T ss_pred HHHHHHH--cCCCEEEEcCCC
Confidence 5555 33 455556665554
No 180
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.98 E-value=1.9e-05 Score=68.43 Aligned_cols=77 Identities=10% Similarity=0.159 Sum_probs=60.0
Q ss_pred CCCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....++|+|||. |.||..||..|.++|+.|++|... +.++++. +++||+||.|++...+ +..
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~-------------t~~l~~~-~~~ADIVI~avg~~~~---v~~ 217 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR-------------TRNLAEV-ARKADILVVAIGRGHF---VTK 217 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC-------------CCCHHHH-HhhCCEEEEecCcccc---CCH
Confidence 456789999998 999999999999999999999321 1256664 4899999999997653 221
Q ss_pred CCCCCCCCCcEEEeCCCC
Q 023897 87 LPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s~ 104 (275)
.. +++|++++|++..
T Consensus 218 -~~--ik~GavVIDvgin 232 (284)
T PRK14179 218 -EF--VKEGAVVIDVGMN 232 (284)
T ss_pred -HH--ccCCcEEEEecce
Confidence 12 6889999999743
No 181
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.98 E-value=3.2e-05 Score=69.01 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=65.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHC--CCeEEEEcCChhh--hHH---HHcC--ceEecChHHHhccCCCEEEEecCchhH
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQ--GHILRATSRTDHS--QLC---HRSG--ISFFSDKRAFLEADNDVILISTSILSL 80 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~--g~~V~~~dr~~~~--~~a---~~~g--~~~~~~~~~~~~~~aD~iilavp~~~~ 80 (275)
...+++|||+|.+|.+.+.++... ..+|.+|||+++. ..+ .+.| +....+++++ ++++|+|+.|||...
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~ea-v~~aDiVitaT~s~~- 204 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREA-VEGCDILVTTTPSRK- 204 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHH-hccCCEEEEecCCCC-
Confidence 346899999999999988777653 3589999999853 222 2345 3567888886 589999999998753
Q ss_pred HHHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897 81 SEVLNSLPVHCLQRRTLIADVLSVKE 106 (275)
Q Consensus 81 ~~v~~~l~~~~l~~~~iv~d~~s~k~ 106 (275)
.++.. .. +++|+.+..+++-+.
T Consensus 205 -P~~~~-~~--l~~g~~v~~vGs~~p 226 (325)
T TIGR02371 205 -PVVKA-DW--VSEGTHINAIGADAP 226 (325)
T ss_pred -cEecH-HH--cCCCCEEEecCCCCc
Confidence 22211 12 678888888876543
No 182
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.93 E-value=3.6e-05 Score=69.21 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=60.7
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHC-CCeEEE-EcCChh-hhHHHHcC-c-----eEecChHHHhccCCCEEEEecCchhH
Q 023897 11 TLKIGIIGF-GPFGQFLAKTMIKQ-GHILRA-TSRTDH-SQLCHRSG-I-----SFFSDKRAFLEADNDVILISTSILSL 80 (275)
Q Consensus 11 ~~~I~IIG~-G~mG~sla~~L~~~-g~~V~~-~dr~~~-~~~a~~~g-~-----~~~~~~~~~~~~~aD~iilavp~~~~ 80 (275)
++||+|||+ |.+|..+++.|.+. ++++.. ++++.. ...+...+ + ....+.++....++|+||+|+|....
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~ 81 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS 81 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH
Confidence 479999996 99999999999876 567655 554332 11221111 1 01222222123689999999999988
Q ss_pred HHHhhcCCCCCCCCCcEEEeCCCC
Q 023897 81 SEVLNSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 81 ~~v~~~l~~~~l~~~~iv~d~~s~ 104 (275)
.++...+ ...|..|+|.++-
T Consensus 82 ~~~v~~a----~~aG~~VID~S~~ 101 (343)
T PRK00436 82 MDLAPQL----LEAGVKVIDLSAD 101 (343)
T ss_pred HHHHHHH----HhCCCEEEECCcc
Confidence 8888876 4468899998864
No 183
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.91 E-value=0.00013 Score=63.23 Aligned_cols=99 Identities=23% Similarity=0.288 Sum_probs=66.0
Q ss_pred CeEEEEc-CChHHHHHHHHHHHC-CCeEEE-EcCCh-hh---hHHHH-----cCceEecChHHHhccCCCEEEEecCchh
Q 023897 12 LKIGIIG-FGPFGQFLAKTMIKQ-GHILRA-TSRTD-HS---QLCHR-----SGISFFSDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 12 ~~I~IIG-~G~mG~sla~~L~~~-g~~V~~-~dr~~-~~---~~a~~-----~g~~~~~~~~~~~~~~aD~iilavp~~~ 79 (275)
+||+|+| +|+||..+++.+.+. ++++.+ +||+. .. ..... .|+..+++++++ ...+|+|+.++|+..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l-~~~~DvVIdfT~p~~ 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAV-ETDPDVLIDFTTPEG 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHh-cCCCCEEEECCChHH
Confidence 7999999 699999999999864 677664 77543 21 11111 356677888885 457899999999998
Q ss_pred HHHHhhcCCCCCCCCCc-EEEeCCCCChhHHHHHHhh
Q 023897 80 LSEVLNSLPVHCLQRRT-LIADVLSVKEYPRNVLLQV 115 (275)
Q Consensus 80 ~~~v~~~l~~~~l~~~~-iv~d~~s~k~~~~~~l~~~ 115 (275)
..+.+... +..|. +++-..+......+.+.+.
T Consensus 81 ~~~~~~~a----l~~g~~vVigttg~~~e~~~~l~~a 113 (266)
T TIGR00036 81 VLNHLKFA----LEHGVRLVVGTTGFSEEDKQELADL 113 (266)
T ss_pred HHHHHHHH----HHCCCCEEEECCCCCHHHHHHHHHH
Confidence 88887776 22232 4443334433344555544
No 184
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.90 E-value=1.9e-05 Score=72.93 Aligned_cols=92 Identities=22% Similarity=0.294 Sum_probs=63.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHcCceE--ecChHHHhccCCCEEEEecCchhH---
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRSGISF--FSDKRAFLEADNDVILISTSILSL--- 80 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~g~~~--~~~~~~~~~~~aD~iilavp~~~~--- 80 (275)
....+|+|||+|.||..++..|...|. +|++++|+++. ..+.+.|... ..+..+. +.++|+||.||+....
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~-l~~aDvVI~aT~s~~~~i~ 258 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEA-LAEADIVISSTGAPHPIIG 258 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHH-hccCCEEEECCCCCCcEEc
Confidence 455799999999999999999999997 89999999853 3555555432 2344454 4789999999986531
Q ss_pred HHHhhcC-CCCCCCCCcEEEeCC
Q 023897 81 SEVLNSL-PVHCLQRRTLIADVL 102 (275)
Q Consensus 81 ~~v~~~l-~~~~l~~~~iv~d~~ 102 (275)
.+.+... .. +-..+.+++|++
T Consensus 259 ~~~l~~~~~~-~~~~~~vviDla 280 (423)
T PRK00045 259 KGMVERALKA-RRHRPLLLVDLA 280 (423)
T ss_pred HHHHHHHHhh-ccCCCeEEEEeC
Confidence 2333332 11 012456888886
No 185
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.90 E-value=5.3e-05 Score=67.96 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=63.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHC-CCeEEE-EcCChhh-h-HHHHc------------------CceEecChHHHhccCC
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQ-GHILRA-TSRTDHS-Q-LCHRS------------------GISFFSDKRAFLEADN 68 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~-g~~V~~-~dr~~~~-~-~a~~~------------------g~~~~~~~~~~~~~~a 68 (275)
++||+|+|+|+||+.+++.+.+. +++|.+ ++++++. . .+.+. ++.+..+.++. ..++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el-~~~v 79 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL-LEKA 79 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh-hccC
Confidence 47999999999999999998865 567765 5655532 1 22222 23444566664 4789
Q ss_pred CEEEEecCchhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897 69 DVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 69 D~iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~ 104 (275)
|+||.|+|+....+..... ++.|..+++.++.
T Consensus 80 DVVIdaT~~~~~~e~a~~~----~~aGk~VI~~~~~ 111 (341)
T PRK04207 80 DIVVDATPGGVGAKNKELY----EKAGVKAIFQGGE 111 (341)
T ss_pred CEEEECCCchhhHHHHHHH----HHCCCEEEEcCCC
Confidence 9999999999877777765 4456778877764
No 186
>PRK11579 putative oxidoreductase; Provisional
Probab=97.90 E-value=7.6e-05 Score=67.18 Aligned_cols=77 Identities=18% Similarity=0.311 Sum_probs=55.1
Q ss_pred CCeEEEEcCChHHH-HHHHHHHHC-CCeEE-EEcCChhhhHHHHcCceEecChHHHhc-cCCCEEEEecCchhHHHHhhc
Q 023897 11 TLKIGIIGFGPFGQ-FLAKTMIKQ-GHILR-ATSRTDHSQLCHRSGISFFSDKRAFLE-ADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 11 ~~~I~IIG~G~mG~-sla~~L~~~-g~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~-~~aD~iilavp~~~~~~v~~~ 86 (275)
++||||||+|.||. ..+..+.+. +.++. ++|++++...+...+...+++.++++. .+.|+|++|+|+....++...
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~ 83 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKA 83 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH
Confidence 47999999999998 456766664 67776 578887533222225567789998642 257999999999877776665
Q ss_pred C
Q 023897 87 L 87 (275)
Q Consensus 87 l 87 (275)
.
T Consensus 84 a 84 (346)
T PRK11579 84 A 84 (346)
T ss_pred H
Confidence 5
No 187
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.88 E-value=2.3e-05 Score=68.42 Aligned_cols=95 Identities=23% Similarity=0.258 Sum_probs=62.8
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChhh--hHHHHcC----ceEecChHHHhccCCCEEEEecCchhH
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDHS--QLCHRSG----ISFFSDKRAFLEADNDVILISTSILSL 80 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~~--~~a~~~g----~~~~~~~~~~~~~~aD~iilavp~~~~ 80 (275)
.....++.|+|+|.+|.+++.+|...| .+|++++|+.+. ..+.+.+ +....+..+. +.++|+||-|+|....
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~-~~~~DivInaTp~g~~ 198 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEE-LADFDLIINATSAGMS 198 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhc-cccCCEEEECCcCCCC
Confidence 345678999999999999999999999 699999999853 2232222 1221122343 3789999999997643
Q ss_pred HHH-hhcCCCCCCCCCcEEEeCCC
Q 023897 81 SEV-LNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 81 ~~v-~~~l~~~~l~~~~iv~d~~s 103 (275)
.+. ...++...++++.+++|+..
T Consensus 199 ~~~~~~~~~~~~l~~~~~v~DivY 222 (278)
T PRK00258 199 GELPLPPLPLSLLRPGTIVYDMIY 222 (278)
T ss_pred CCCCCCCCCHHHcCCCCEEEEeec
Confidence 211 01111112667889999864
No 188
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.86 E-value=0.00014 Score=63.47 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=64.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHC-CCeEE-EEcCChh---hhHHHHcCce-EecChHHHhc-cCCCEEEEecCchhHHHH
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQ-GHILR-ATSRTDH---SQLCHRSGIS-FFSDKRAFLE-ADNDVILISTSILSLSEV 83 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~-g~~V~-~~dr~~~---~~~a~~~g~~-~~~~~~~~~~-~~aD~iilavp~~~~~~v 83 (275)
++||+|||+|+||..++..+.+. +.++. ++|++++ ...+.+.|+. .+++.++++. .+.|+|++|+|.....+.
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~ 80 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARH 80 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence 36899999999999887777654 56666 5788874 2467778885 4457777532 257899999999988777
Q ss_pred hhcCCCCCCCCCcEEEeCCC
Q 023897 84 LNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 84 ~~~l~~~~l~~~~iv~d~~s 103 (275)
.... +..|..++|...
T Consensus 81 a~~a----l~aGk~VIdekP 96 (285)
T TIGR03215 81 ARLL----AELGKIVIDLTP 96 (285)
T ss_pred HHHH----HHcCCEEEECCc
Confidence 7665 445777777553
No 189
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.85 E-value=0.00012 Score=64.74 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=65.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHH-CC-CeEEEEcCChhh--hHHHH---cCceE-ecChHHHhccCCCEEEEecCchhHH
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIK-QG-HILRATSRTDHS--QLCHR---SGISF-FSDKRAFLEADNDVILISTSILSLS 81 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~-~g-~~V~~~dr~~~~--~~a~~---~g~~~-~~~~~~~~~~~aD~iilavp~~~~~ 81 (275)
...+++|||+|.+|.+.+.++.. .+ .+|.+|+|+++. +.+.+ .++.. ..+.+++ +.++|+|+.|||...
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~a-v~~aDiVitaT~s~~-- 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAI-PEAVDLVVTATTSRT-- 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHH-hhcCCEEEEccCCCC--
Confidence 44689999999999999999975 45 479999999852 23332 23333 4677776 489999999999874
Q ss_pred HHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897 82 EVLNSLPVHCLQRRTLIADVLSVKE 106 (275)
Q Consensus 82 ~v~~~l~~~~l~~~~iv~d~~s~k~ 106 (275)
.++.. . +++|+.|.-+++-+.
T Consensus 201 Pl~~~--~--~~~g~hi~~iGs~~p 221 (304)
T PRK07340 201 PVYPE--A--ARAGRLVVAVGAFTP 221 (304)
T ss_pred ceeCc--c--CCCCCEEEecCCCCC
Confidence 33332 2 678888888886554
No 190
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.84 E-value=0.00012 Score=64.69 Aligned_cols=85 Identities=24% Similarity=0.263 Sum_probs=57.2
Q ss_pred EEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhhhHHHHc----------CceE--ecChHHHhccCCCEEEEecCch-
Q 023897 14 IGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHSQLCHRS----------GISF--FSDKRAFLEADNDVILISTSIL- 78 (275)
Q Consensus 14 I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~~~a~~~----------g~~~--~~~~~~~~~~~aD~iilavp~~- 78 (275)
|+|||+|.+|+++|..|+..| .+++++|++++...+... .... .++.++ +++||+||++....
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~--l~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYAD--AADADIVVITAGAPR 78 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHH--hCCCCEEEEcCCCCC
Confidence 689999999999999999988 589999998753221111 1122 344454 38999999997741
Q ss_pred ---------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897 79 ---------------SLSEVLNSL-PVHCLQRRTLIADVLS 103 (275)
Q Consensus 79 ---------------~~~~v~~~l-~~~~l~~~~iv~d~~s 103 (275)
.+.++...+ .+ .++.+++.+++
T Consensus 79 ~~~~~R~~l~~~n~~i~~~~~~~i~~~---~p~~~viv~sN 116 (300)
T cd00300 79 KPGETRLDLINRNAPILRSVITNLKKY---GPDAIILVVSN 116 (300)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEEccC
Confidence 245566666 43 35666665554
No 191
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.83 E-value=7.5e-05 Score=64.92 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=61.0
Q ss_pred CCCCCCeEEEEcCCh-HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 7 SSSSTLKIGIIGFGP-FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 7 ~~~~~~~I~IIG~G~-mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
......+|.|||.|. +|..+|..|.+.|..|+++.+.. .++.+. ..+||+||.|++...+ +.
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-------------~~l~~~-~~~ADIVIsAvg~p~~---i~ 216 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-------------KDMASY-LKDADVIVSAVGKPGL---VT 216 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHH-HhhCCEEEECCCCCcc---cC
Confidence 456778999999988 99999999999999999988652 245554 4899999999997642 11
Q ss_pred cCCCCCCCCCcEEEeCCCC
Q 023897 86 SLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~s~ 104 (275)
. .. +++|++++|++..
T Consensus 217 ~-~~--vk~gavVIDvGi~ 232 (286)
T PRK14175 217 K-DV--VKEGAVIIDVGNT 232 (286)
T ss_pred H-HH--cCCCcEEEEcCCC
Confidence 1 12 6789999999864
No 192
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.82 E-value=5.6e-05 Score=66.04 Aligned_cols=92 Identities=16% Similarity=0.234 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCch-hHHHHhhcC
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSIL-SLSEVLNSL 87 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~-~~~~v~~~l 87 (275)
...+++||+|+|++|+-+|.+++..|-.|++||.-...+.+...|++.. +++|+ ...||.|-+-+|-. .+..++..-
T Consensus 144 l~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~v-sl~Ei-l~~ADFitlH~PLtP~T~~lin~~ 221 (406)
T KOG0068|consen 144 LRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLV-SLEEI-LPKADFITLHVPLTPSTEKLLNDE 221 (406)
T ss_pred EeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhccceee-eHHHH-HhhcCEEEEccCCCcchhhccCHH
Confidence 3467899999999999999999999999999998766667777888774 67775 48999999999963 456666543
Q ss_pred CCCCCCCCcEEEeCC
Q 023897 88 PVHCLQRRTLIADVL 102 (275)
Q Consensus 88 ~~~~l~~~~iv~d~~ 102 (275)
.++.+++|..+++++
T Consensus 222 tfA~mKkGVriIN~a 236 (406)
T KOG0068|consen 222 TFAKMKKGVRIINVA 236 (406)
T ss_pred HHHHhhCCcEEEEec
Confidence 112288999998876
No 193
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.81 E-value=0.00014 Score=73.51 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=55.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCC-Ce-------------EEEEcCChhh-h-HHHHc-Cc---eE-ecChHHHh--cc
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQG-HI-------------LRATSRTDHS-Q-LCHRS-GI---SF-FSDKRAFL--EA 66 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g-~~-------------V~~~dr~~~~-~-~a~~~-g~---~~-~~~~~~~~--~~ 66 (275)
.++||+|||+|.||+..+..|.+.. ++ |.+.|++.+. + .+... ++ .. ..+.+++. ++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 4668999999999999999998753 33 8889999743 2 33333 42 33 45555532 25
Q ss_pred CCCEEEEecCchhHHHHhhcC
Q 023897 67 DNDVILISTSILSLSEVLNSL 87 (275)
Q Consensus 67 ~aD~iilavp~~~~~~v~~~l 87 (275)
++|+|++|+|.....+++...
T Consensus 648 ~~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 648 QVDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred CCCEEEECCCchhhHHHHHHH
Confidence 799999999998776766665
No 194
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.80 E-value=9.1e-05 Score=66.22 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=58.8
Q ss_pred CCCCeEEEEcCChHH-HHHHHHHHHCCC--e-EEEEcCChhh--hHHHHcCce-EecChHHHhccC-CCEEEEecCchhH
Q 023897 9 SSTLKIGIIGFGPFG-QFLAKTMIKQGH--I-LRATSRTDHS--QLCHRSGIS-FFSDKRAFLEAD-NDVILISTSILSL 80 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG-~sla~~L~~~g~--~-V~~~dr~~~~--~~a~~~g~~-~~~~~~~~~~~~-aD~iilavp~~~~ 80 (275)
++++||||||+|.++ ...+..+.+.+. . |.++|++++. ..+.+.|+. .+++.++++... .|+|++|+|++..
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 356899999999665 568888888752 4 5567999853 467778884 788999875323 5999999999887
Q ss_pred HHHhhcC
Q 023897 81 SEVLNSL 87 (275)
Q Consensus 81 ~~v~~~l 87 (275)
.++....
T Consensus 81 ~e~~~~A 87 (342)
T COG0673 81 AELALAA 87 (342)
T ss_pred HHHHHHH
Confidence 7766544
No 195
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.78 E-value=5.2e-05 Score=66.35 Aligned_cols=93 Identities=20% Similarity=0.140 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHc----C-ceE--ecChHHHhccCCCEEEEecCch
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRS----G-ISF--FSDKRAFLEADNDVILISTSIL 78 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~----g-~~~--~~~~~~~~~~~aD~iilavp~~ 78 (275)
....+|.|||+|.+|++++..|...|. +|+++||+.+. ..+... . ... ..+..+. +.++|+||-|+|..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~-~~~aDiVInaTp~G 203 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAA-LAAADGLVHATPTG 203 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhh-hCCCCEEEECCcCC
Confidence 345789999999999999999999997 89999999753 222221 1 121 2233333 37899999999875
Q ss_pred hHHHHhhcCCCCCCCCCcEEEeCC
Q 023897 79 SLSEVLNSLPVHCLQRRTLIADVL 102 (275)
Q Consensus 79 ~~~~v~~~l~~~~l~~~~iv~d~~ 102 (275)
....--..++...+.++.++.|+.
T Consensus 204 m~~~~~~~~~~~~l~~~~~v~Div 227 (284)
T PRK12549 204 MAKHPGLPLPAELLRPGLWVADIV 227 (284)
T ss_pred CCCCCCCCCCHHHcCCCcEEEEee
Confidence 311100012111156677888876
No 196
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.77 E-value=0.00018 Score=62.20 Aligned_cols=86 Identities=20% Similarity=0.232 Sum_probs=58.2
Q ss_pred EEEEcC-ChHHHHHHHHHHHCC----CeEEEEcCChhh-h-HH-------HH---cCceEecChHHHhccCCCEEEEecC
Q 023897 14 IGIIGF-GPFGQFLAKTMIKQG----HILRATSRTDHS-Q-LC-------HR---SGISFFSDKRAFLEADNDVILISTS 76 (275)
Q Consensus 14 I~IIG~-G~mG~sla~~L~~~g----~~V~~~dr~~~~-~-~a-------~~---~g~~~~~~~~~~~~~~aD~iilavp 76 (275)
|+|||+ |.||..++..|...| .+|.++|++++. . .. .. ..+..++++.++ +++||+||++.-
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~-~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEA-FKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHH-hCCCCEEEECCC
Confidence 689999 999999999999988 689999998742 1 11 11 123445665565 489999999653
Q ss_pred c----------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897 77 I----------------LSLSEVLNSL-PVHCLQRRTLIADVLS 103 (275)
Q Consensus 77 ~----------------~~~~~v~~~l-~~~~l~~~~iv~d~~s 103 (275)
. ..+.++.+.+ .+ .++.+++.+++
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~---~p~a~~i~~tN 120 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKY---SPDAWIIVVSN 120 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecC
Confidence 3 1345666666 43 46666666643
No 197
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.76 E-value=0.00023 Score=53.71 Aligned_cols=103 Identities=13% Similarity=0.176 Sum_probs=66.6
Q ss_pred CeEEEEc----CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897 12 LKIGIIG----FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL 87 (275)
Q Consensus 12 ~~I~IIG----~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l 87 (275)
++|+||| .|.+|..+...|.+.|++|+..+..... -.|...+.++.+ .-...|++++++|++.+.++++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~----i~G~~~y~sl~e-~p~~iDlavv~~~~~~~~~~v~~~ 75 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE----ILGIKCYPSLAE-IPEPIDLAVVCVPPDKVPEIVDEA 75 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE----ETTEE-BSSGGG-CSST-SEEEE-S-HHHHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE----ECcEEeeccccC-CCCCCCEEEEEcCHHHHHHHHHHH
Confidence 4799999 6999999999999999999988766521 136677788876 346889999999999999999998
Q ss_pred CCCCCCCCcEEEeCCCCChhHHHHHHhhCCCCCceee
Q 023897 88 PVHCLQRRTLIADVLSVKEYPRNVLLQVLPEEMDVLC 124 (275)
Q Consensus 88 ~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~~~~~v~ 124 (275)
.. +..+.+++-.++......+..++ .+.++++
T Consensus 76 ~~--~g~~~v~~~~g~~~~~~~~~a~~---~gi~vig 107 (116)
T PF13380_consen 76 AA--LGVKAVWLQPGAESEELIEAARE---AGIRVIG 107 (116)
T ss_dssp HH--HT-SEEEE-TTS--HHHHHHHHH---TT-EEEE
T ss_pred HH--cCCCEEEEEcchHHHHHHHHHHH---cCCEEEe
Confidence 22 34556666555333333333332 3456664
No 198
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.75 E-value=0.00016 Score=65.13 Aligned_cols=88 Identities=18% Similarity=0.283 Sum_probs=61.1
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHC-CCeEE-EEcCChh--hhHHHHc----C---ceEe-cChHHHhccCCCEEEEecCch
Q 023897 12 LKIGIIGF-GPFGQFLAKTMIKQ-GHILR-ATSRTDH--SQLCHRS----G---ISFF-SDKRAFLEADNDVILISTSIL 78 (275)
Q Consensus 12 ~~I~IIG~-G~mG~sla~~L~~~-g~~V~-~~dr~~~--~~~a~~~----g---~~~~-~~~~~~~~~~aD~iilavp~~ 78 (275)
|||+|||+ |.+|..+.+.|.+. ++++. +++++.. ....... + ..+. .+.++. ..++|++|+|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~DvVf~alP~~ 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEI-AEDADVVFLALPHG 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHh-hcCCCEEEECCCch
Confidence 58999997 99999999999976 56777 4454432 1121111 1 1121 144553 35899999999999
Q ss_pred hHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897 79 SLSEVLNSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 79 ~~~~v~~~l~~~~l~~~~iv~d~~s~ 104 (275)
...++...+ ...|..|+|.++.
T Consensus 80 ~s~~~~~~~----~~~G~~VIDlS~~ 101 (346)
T TIGR01850 80 VSAELAPEL----LAAGVKVIDLSAD 101 (346)
T ss_pred HHHHHHHHH----HhCCCEEEeCChh
Confidence 888888876 3457899998864
No 199
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=97.75 E-value=0.00016 Score=62.77 Aligned_cols=153 Identities=13% Similarity=0.114 Sum_probs=92.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhh-hHH-------------------HHcCceEecChHHHhccCC
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHS-QLC-------------------HRSGISFFSDKRAFLEADN 68 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~-~~a-------------------~~~g~~~~~~~~~~~~~~a 68 (275)
++||+.||+|.+|+.....++.+- .+|+++|.+... ... +..+.-+.++.+.+ +.++
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdieka-i~ea 79 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKA-IKEA 79 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHH-hhhc
Confidence 479999999999998877766543 478888877532 111 11122456788886 4899
Q ss_pred CEEEEecCch---------------hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhCCC---CCce-eecCCC
Q 023897 69 DVILISTSIL---------------SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVLPE---EMDV-LCTHPM 128 (275)
Q Consensus 69 D~iilavp~~---------------~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l~~---~~~~-v~~hP~ 128 (275)
|+||++|... ..+...+.+ .. -....|++.-+++.....+.+.+.+.. +.+| +-.+|-
T Consensus 80 dlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~--s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpe 157 (481)
T KOG2666|consen 80 DLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADV--SVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPE 157 (481)
T ss_pred ceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHh--ccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChH
Confidence 9999997651 244555555 33 345678998888776666777776642 3333 344565
Q ss_pred CCCCC-CcCCccccceeeeeeecCChH---HHHHHHHHHHHcC
Q 023897 129 FGPES-GQNGWKDFAFVYEKVRIRDEA---TCSSFLRIFESEG 167 (275)
Q Consensus 129 ~g~~~-~~~~~~g~~~~~~~~~~~~~~---~~~~~~~l~~~~G 167 (275)
|-.+- +-..+.+...++.+++. +++ +++.+..+++.+-
T Consensus 158 flaegtaikdl~npdrvligg~e-tpeg~~av~~l~~vyehwv 199 (481)
T KOG2666|consen 158 FLAEGTAIKDLFNPDRVLIGGRE-TPEGFQAVQALKDVYEHWV 199 (481)
T ss_pred HhcccchhhhhcCCceEEECCCC-ChhHHHHHHHHHHHHHhhC
Confidence 54431 11223344445555443 233 4555666677654
No 200
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.74 E-value=0.0001 Score=68.04 Aligned_cols=91 Identities=24% Similarity=0.339 Sum_probs=62.4
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChhh--hHHHHcCceE--ecChHHHhccCCCEEEEecCchhH---
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDHS--QLCHRSGISF--FSDKRAFLEADNDVILISTSILSL--- 80 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~~--~~a~~~g~~~--~~~~~~~~~~~aD~iilavp~~~~--- 80 (275)
....+|+|||+|.||..+++.|...| .+|++++|+... ..+.+.|... ..+..+. +.++|+||.|++....
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~-l~~aDvVi~aT~s~~~ii~ 256 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEY-LAEADIVISSTGAPHPIVS 256 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHH-HhhCCEEEECCCCCCceEc
Confidence 34578999999999999999999999 689999999853 3555555432 2345554 4799999999876431
Q ss_pred HHHhhcC-CCCCCCCCcEEEeCC
Q 023897 81 SEVLNSL-PVHCLQRRTLIADVL 102 (275)
Q Consensus 81 ~~v~~~l-~~~~l~~~~iv~d~~ 102 (275)
.+.+... .. -+...+++|++
T Consensus 257 ~e~l~~~~~~--~~~~~~viDla 277 (417)
T TIGR01035 257 KEDVERALRE--RTRPLFIIDIA 277 (417)
T ss_pred HHHHHHHHhc--CCCCeEEEEeC
Confidence 2333332 11 11235788876
No 201
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.71 E-value=0.00015 Score=59.79 Aligned_cols=92 Identities=22% Similarity=0.164 Sum_probs=61.5
Q ss_pred CCCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHH----cCce--E--ecCh---HHHhccCCCEEEE
Q 023897 8 SSSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHS--QLCHR----SGIS--F--FSDK---RAFLEADNDVILI 73 (275)
Q Consensus 8 ~~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~----~g~~--~--~~~~---~~~~~~~aD~iil 73 (275)
....+++.|+|. |.+|..++..|.+.|++|++++|+.+. ..+.. .+.. . ..+. .++ +.++|+||.
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~diVi~ 103 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAA-IKGADVVFA 103 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHH-HhcCCEEEE
Confidence 456689999995 999999999999999999999999742 22221 1221 1 1222 243 478999999
Q ss_pred ecCchhHHHHhhcC-CCCCCCCCcEEEeCCCC
Q 023897 74 STSILSLSEVLNSL-PVHCLQRRTLIADVLSV 104 (275)
Q Consensus 74 avp~~~~~~v~~~l-~~~~l~~~~iv~d~~s~ 104 (275)
++|..... .... .. .+++.+++|+.-.
T Consensus 104 at~~g~~~--~~~~~~~--~~~~~vv~D~~~~ 131 (194)
T cd01078 104 AGAAGVEL--LEKLAWA--PKPLAVAADVNAV 131 (194)
T ss_pred CCCCCcee--chhhhcc--cCceeEEEEccCC
Confidence 99977631 1111 12 3457889998643
No 202
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.70 E-value=0.00017 Score=64.33 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=64.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHH-CCC-eEEEEcCChhh--hHHH----HcCc--eEecChHHHhccCCCEEEEecCchh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIK-QGH-ILRATSRTDHS--QLCH----RSGI--SFFSDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~-~g~-~V~~~dr~~~~--~~a~----~~g~--~~~~~~~~~~~~~aD~iilavp~~~ 79 (275)
...+++|||+|.+|.+.+.++.. .+. +|.+|+|+++. +.+. +.++ ....+.+++ +.++|+|+.|||...
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEA-IEEADIIVTVTNAKT 204 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHH-HhcCCEEEEccCCCC
Confidence 34689999999999999888764 353 89999999853 2222 2344 346777876 489999999999763
Q ss_pred HHHHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897 80 LSEVLNSLPVHCLQRRTLIADVLSVKE 106 (275)
Q Consensus 80 ~~~v~~~l~~~~l~~~~iv~d~~s~k~ 106 (275)
.++. .. +++|+.|..+++-+.
T Consensus 205 --p~i~--~~--l~~G~hV~~iGs~~p 225 (325)
T PRK08618 205 --PVFS--EK--LKKGVHINAVGSFMP 225 (325)
T ss_pred --cchH--Hh--cCCCcEEEecCCCCc
Confidence 3333 23 788999988887544
No 203
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.68 E-value=0.00026 Score=62.69 Aligned_cols=63 Identities=27% Similarity=0.385 Sum_probs=45.6
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHCCC--eEEEEcCCh--hhh--HH----H---HcC--c--eEecChHHHhccCCCEEEE
Q 023897 12 LKIGIIGF-GPFGQFLAKTMIKQGH--ILRATSRTD--HSQ--LC----H---RSG--I--SFFSDKRAFLEADNDVILI 73 (275)
Q Consensus 12 ~~I~IIG~-G~mG~sla~~L~~~g~--~V~~~dr~~--~~~--~a----~---~~g--~--~~~~~~~~~~~~~aD~iil 73 (275)
|||+|||+ |.+|..++..|...|+ +|+++|+++ +.. .+ . ..+ . ...++.++ +.++|+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~--l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD--VAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH--hCCCCEEEE
Confidence 79999997 9999999999999986 599999965 211 11 0 112 1 23345554 389999999
Q ss_pred ecC
Q 023897 74 STS 76 (275)
Q Consensus 74 avp 76 (275)
|+.
T Consensus 79 tag 81 (309)
T cd05294 79 TAG 81 (309)
T ss_pred ecC
Confidence 986
No 204
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.66 E-value=0.00028 Score=64.11 Aligned_cols=90 Identities=16% Similarity=0.119 Sum_probs=62.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHH-HHcCceE---e---cChHHHhccCCCEEEEecCch---
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLC-HRSGISF---F---SDKRAFLEADNDVILISTSIL--- 78 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a-~~~g~~~---~---~~~~~~~~~~aD~iilavp~~--- 78 (275)
...+|.|||+|.+|...++.++..|.+|+++||++.. +.+ ...+..+ . .++.+. +.++|+||.|++..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~-l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDA-VKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHH-HccCCEEEEccccCCCC
Confidence 3467999999999999999999999999999999753 322 2333321 1 233454 47899999998431
Q ss_pred ----hHHHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897 79 ----SLSEVLNSLPVHCLQRRTLIADVLSVK 105 (275)
Q Consensus 79 ----~~~~v~~~l~~~~l~~~~iv~d~~s~k 105 (275)
...+.+ .. ++++.+++|++...
T Consensus 245 ~p~lit~~~l---~~--mk~g~vIvDva~d~ 270 (370)
T TIGR00518 245 APKLVSNSLV---AQ--MKPGAVIVDVAIDQ 270 (370)
T ss_pred CCcCcCHHHH---hc--CCCCCEEEEEecCC
Confidence 123333 33 67788999987543
No 205
>PLN00203 glutamyl-tRNA reductase
Probab=97.65 E-value=0.00013 Score=68.88 Aligned_cols=93 Identities=24% Similarity=0.422 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHc-Cce----EecChHHHhccCCCEEEEecCchh-
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRS-GIS----FFSDKRAFLEADNDVILISTSILS- 79 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~-g~~----~~~~~~~~~~~~aD~iilavp~~~- 79 (275)
....+|+|||+|.||..+++.|...|+ +|++++|+.+. ..+.+. +.. ...+..++ +.++|+||.||+...
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~a-l~~aDVVIsAT~s~~p 342 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLAC-AAEADVVFTSTSSETP 342 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHH-HhcCCEEEEccCCCCC
Confidence 456799999999999999999999996 79999999853 333333 321 22355554 489999999986542
Q ss_pred --HHHHhhcC-CCC-CCCCCcEEEeCC
Q 023897 80 --LSEVLNSL-PVH-CLQRRTLIADVL 102 (275)
Q Consensus 80 --~~~v~~~l-~~~-~l~~~~iv~d~~ 102 (275)
..+.++.+ +.. ......+++|++
T Consensus 343 vI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 343 LFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred eeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 35666665 210 001235788876
No 206
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.61 E-value=0.00012 Score=67.60 Aligned_cols=68 Identities=16% Similarity=0.331 Sum_probs=46.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL 78 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~ 78 (275)
...+|.|||.|.+|.++|+.|++.|++|+++|+++. .......+-......+.. ..++|++|.+.+..
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvV~s~gi~ 70 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEF-PEQVDLVVRSPGIK 70 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHH-hcCCCEEEECCCCC
Confidence 346899999999999999999999999999998764 211110000111233332 36789999887653
No 207
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.61 E-value=0.00045 Score=49.10 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=47.6
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHC-CCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQ-GHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSL 87 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~-g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l 87 (275)
...++++|+|+|.+|..++..|.+. +.+|.+||| |++|-|++......- +.+
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~-~~~ 73 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLE-EAT 73 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchH-HHH
Confidence 4567999999999999999999998 578999987 888888877543211 012
Q ss_pred CCCCCCCCcEEEeC
Q 023897 88 PVHCLQRRTLIADV 101 (275)
Q Consensus 88 ~~~~l~~~~iv~d~ 101 (275)
.. ++++.+++|+
T Consensus 74 ~~--~~~~~~v~~~ 85 (86)
T cd05191 74 AK--INEGAVVIDL 85 (86)
T ss_pred Hh--cCCCCEEEec
Confidence 22 4567788875
No 208
>PRK06046 alanine dehydrogenase; Validated
Probab=97.61 E-value=0.00019 Score=64.04 Aligned_cols=90 Identities=19% Similarity=0.215 Sum_probs=63.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHC-CC-eEEEEcCChhh--hHHHH----cCc--eEecChHHHhccCCCEEEEecCchh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQ-GH-ILRATSRTDHS--QLCHR----SGI--SFFSDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~-g~-~V~~~dr~~~~--~~a~~----~g~--~~~~~~~~~~~~~aD~iilavp~~~ 79 (275)
...+|+|||+|.+|.+.+..+... +. .|.+|||+++. +.+.+ .+. ....+.+++ ++ +|+|+.|+|...
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~-aDiVv~aTps~~ 205 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEA-CD-CDILVTTTPSRK 205 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHH-hh-CCEEEEecCCCC
Confidence 346899999999999999999854 43 78899999842 22222 243 456788886 45 999999999753
Q ss_pred HHHHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897 80 LSEVLNSLPVHCLQRRTLIADVLSVKE 106 (275)
Q Consensus 80 ~~~v~~~l~~~~l~~~~iv~d~~s~k~ 106 (275)
.++.. .. +++|+.|..+++-+.
T Consensus 206 --P~~~~-~~--l~~g~hV~~iGs~~p 227 (326)
T PRK06046 206 --PVVKA-EW--IKEGTHINAIGADAP 227 (326)
T ss_pred --cEecH-HH--cCCCCEEEecCCCCC
Confidence 22211 12 678888888887554
No 209
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.61 E-value=0.00068 Score=60.37 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=58.3
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCChh--hh--HHHH---------cCceEecChHHHhccCC
Q 023897 10 STLKIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRTDH--SQ--LCHR---------SGISFFSDKRAFLEADN 68 (275)
Q Consensus 10 ~~~~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~~~--~~--~a~~---------~g~~~~~~~~~~~~~~a 68 (275)
...||+|||+ |.+|+++|..|...|. ++.++|+++. .. .+.+ .+..+..+..+. +++|
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~-~~da 80 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEA-FKDV 80 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHH-hCCC
Confidence 4579999998 9999999999998874 7999999652 11 1111 112333343343 4899
Q ss_pred CEEEEecCch----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897 69 DVILISTSIL----------------SLSEVLNSL-PVHCLQRRTLIADVLS 103 (275)
Q Consensus 69 D~iilavp~~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s 103 (275)
|+||++.... .+.++...+ .+ .+++.+++-+++
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~--~~~~~iiivvsN 130 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKV--AKKDVKVLVVGN 130 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh--CCCCeEEEEeCC
Confidence 9999985441 245566666 44 333666665543
No 210
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.61 E-value=7.7e-05 Score=54.28 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=54.9
Q ss_pred CCeEEEEcCChHHHHHHHHHH-HCCCeE-EEEcCChhhhHHHHcCceEecChHHHhccC--CCEEEEecCchhHHHHhhc
Q 023897 11 TLKIGIIGFGPFGQFLAKTMI-KQGHIL-RATSRTDHSQLCHRSGISFFSDKRAFLEAD--NDVILISTSILSLSEVLNS 86 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~-~~g~~V-~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~--aD~iilavp~~~~~~v~~~ 86 (275)
..+++|+|+|+.|.+++..+. ..|+.+ .++|.++...-..-.|+.+..+.+++ .+. .|+.+++||.....++..+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l-~~~~~i~iaii~VP~~~a~~~~~~ 81 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDEL-EEFIEIDIAIITVPAEAAQEVADE 81 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHH-HHHCTTSEEEEES-HHHHHHHHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHh-hhhhCCCEEEEEcCHHHHHHHHHH
Confidence 468999999999999985444 357754 46788875321222377777777775 344 8999999999998888887
Q ss_pred C
Q 023897 87 L 87 (275)
Q Consensus 87 l 87 (275)
+
T Consensus 82 ~ 82 (96)
T PF02629_consen 82 L 82 (96)
T ss_dssp H
T ss_pred H
Confidence 7
No 211
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.60 E-value=0.00032 Score=62.65 Aligned_cols=88 Identities=19% Similarity=0.205 Sum_probs=62.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHH-CCC-eEEEEcCChhh--hHHH----HcCce--EecChHHHhccCCCEEEEecCchhH
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIK-QGH-ILRATSRTDHS--QLCH----RSGIS--FFSDKRAFLEADNDVILISTSILSL 80 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~-~g~-~V~~~dr~~~~--~~a~----~~g~~--~~~~~~~~~~~~aD~iilavp~~~~ 80 (275)
..+++|||+|.+|.+.+.+|.. .+. +|++|+|+++. +.+. +.|+. ...+.+++ +.++|+|+.|||...
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~a-v~~aDiVvtaT~s~~- 206 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAA-MSGADIIVTTTPSET- 206 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHH-hccCCEEEEecCCCC-
Confidence 4689999999999999999974 564 79999999853 2222 22553 35777876 489999999999753
Q ss_pred HHHhhcCCCCCCCCCcEEEeCCCC
Q 023897 81 SEVLNSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 81 ~~v~~~l~~~~l~~~~iv~d~~s~ 104 (275)
.++.. .. +++|+.+..+++-
T Consensus 207 -p~i~~-~~--l~~g~~i~~vg~~ 226 (326)
T TIGR02992 207 -PILHA-EW--LEPGQHVTAMGSD 226 (326)
T ss_pred -cEecH-HH--cCCCcEEEeeCCC
Confidence 22211 12 6778877777653
No 212
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.59 E-value=0.0002 Score=66.68 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=52.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHH-cCceEe----cC---hHHHhccCCCEEEEecCchhHHH
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHR-SGISFF----SD---KRAFLEADNDVILISTSILSLSE 82 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~-~g~~~~----~~---~~~~~~~~aD~iilavp~~~~~~ 82 (275)
|+|.|+|+|.+|..++..|.+.|++|++++++++ .....+ .|+... .+ ++++-+.++|.+|++++.+....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n~ 80 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETNM 80 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHHH
Confidence 6899999999999999999999999999999985 333333 454321 11 22221368999999999875543
No 213
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.58 E-value=0.00027 Score=65.00 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHcC-ce--EecChHHHhccCCCEEEEecCchh
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRSG-IS--FFSDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~g-~~--~~~~~~~~~~~~aD~iilavp~~~ 79 (275)
...++|.|||+|.||..++..|...|. +|++++|+.+. ..+.+.+ .. ..+++.+. +.++|+||.||+.+.
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~-l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQL-IKKADIIIAAVNVLE 254 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHH-hccCCEEEECcCCCC
Confidence 456789999999999999999999995 79999999742 3455444 32 22444554 478999999998754
No 214
>PRK15076 alpha-galactosidase; Provisional
Probab=97.57 E-value=0.00042 Score=64.14 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=46.6
Q ss_pred CCeEEEEcCChHHHHHHH--HHH--H--CCCeEEEEcCChhh-hHH--------HHcC----ceEecChHHHhccCCCEE
Q 023897 11 TLKIGIIGFGPFGQFLAK--TMI--K--QGHILRATSRTDHS-QLC--------HRSG----ISFFSDKRAFLEADNDVI 71 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~--~L~--~--~g~~V~~~dr~~~~-~~a--------~~~g----~~~~~~~~~~~~~~aD~i 71 (275)
++||+|||+|.||.+.+. .+. . .+.+|+++|++++. +.. ...+ +..+++..++ +++||+|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~ea-l~dADfV 79 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREA-LQGADYV 79 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHH-hCCCCEE
Confidence 379999999999977655 443 1 24689999999853 211 1122 2456776675 4899999
Q ss_pred EEecCch
Q 023897 72 LISTSIL 78 (275)
Q Consensus 72 ilavp~~ 78 (275)
|.++-..
T Consensus 80 v~ti~vg 86 (431)
T PRK15076 80 INAIQVG 86 (431)
T ss_pred eEeeeeC
Confidence 9997764
No 215
>PRK05442 malate dehydrogenase; Provisional
Probab=97.56 E-value=0.00077 Score=60.09 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=45.2
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCChhh--h--HHHH---------cCceEecChHHHhccCC
Q 023897 10 STLKIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRTDHS--Q--LCHR---------SGISFFSDKRAFLEADN 68 (275)
Q Consensus 10 ~~~~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~~~~--~--~a~~---------~g~~~~~~~~~~~~~~a 68 (275)
.++||+|||+ |.+|+++|..|...|. ++.++|+++.. . .+.+ .+..++.+..+. +++|
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~-~~da 81 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVA-FKDA 81 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHH-hCCC
Confidence 4579999998 9999999999887663 79999985421 1 1110 123344444343 4899
Q ss_pred CEEEEecC
Q 023897 69 DVILISTS 76 (275)
Q Consensus 69 D~iilavp 76 (275)
|+||++-.
T Consensus 82 DiVVitaG 89 (326)
T PRK05442 82 DVALLVGA 89 (326)
T ss_pred CEEEEeCC
Confidence 99999855
No 216
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.53 E-value=0.00026 Score=63.41 Aligned_cols=87 Identities=13% Similarity=0.182 Sum_probs=59.5
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHCCC---eEEEEcCChh--hhHHHH-cCceEec-ChHHHhccCCCEEEEecCchhHHH
Q 023897 11 TLKIGIIG-FGPFGQFLAKTMIKQGH---ILRATSRTDH--SQLCHR-SGISFFS-DKRAFLEADNDVILISTSILSLSE 82 (275)
Q Consensus 11 ~~~I~IIG-~G~mG~sla~~L~~~g~---~V~~~dr~~~--~~~a~~-~g~~~~~-~~~~~~~~~aD~iilavp~~~~~~ 82 (275)
++||+|+| .|..|..+.+.|.+.+| ++....++.. ...... ..+.... +..+ + .++|+||+|+|.....+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~-~-~~vDvVf~A~g~g~s~~ 78 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFD-F-SGVDIALFSAGGSVSKK 78 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHH-H-cCCCEEEECCChHHHHH
Confidence 47999999 69999999999999876 4455544432 111110 1122221 2223 2 68999999999998888
Q ss_pred HhhcCCCCCCCCCcEEEeCCC
Q 023897 83 VLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 83 v~~~l~~~~l~~~~iv~d~~s 103 (275)
+...+ +..|..|+|.++
T Consensus 79 ~~~~~----~~~G~~VIDlS~ 95 (334)
T PRK14874 79 YAPKA----AAAGAVVIDNSS 95 (334)
T ss_pred HHHHH----HhCCCEEEECCc
Confidence 88776 456789999876
No 217
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.51 E-value=0.0003 Score=64.08 Aligned_cols=90 Identities=26% Similarity=0.414 Sum_probs=64.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChhh--hHHHHcCceE--ecChHHHhccCCCEEEEecCchh--H-
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDHS--QLCHRSGISF--FSDKRAFLEADNDVILISTSILS--L- 80 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~~--~~a~~~g~~~--~~~~~~~~~~~aD~iilavp~~~--~- 80 (275)
....++.|||+|-||...|+.|..+| .+|++.+|+.+. ..+.+.|..+ .+++.+. +.++|+||.||.... +
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~-l~~~DvVissTsa~~~ii~ 254 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEA-LAEADVVISSTSAPHPIIT 254 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHh-hhhCCEEEEecCCCccccC
Confidence 45678999999999999999999999 589999999853 5678887543 3455554 479999999976542 2
Q ss_pred HHHhhcC-CCCCCCCCcEEEeCC
Q 023897 81 SEVLNSL-PVHCLQRRTLIADVL 102 (275)
Q Consensus 81 ~~v~~~l-~~~~l~~~~iv~d~~ 102 (275)
.+-++.. . -++..+++|++
T Consensus 255 ~~~ve~a~~---~r~~~livDia 274 (414)
T COG0373 255 REMVERALK---IRKRLLIVDIA 274 (414)
T ss_pred HHHHHHHHh---cccCeEEEEec
Confidence 2333332 2 12235788876
No 218
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.51 E-value=0.00049 Score=62.64 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=61.3
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHC-CCeEEEEcCChhh-hH-HH-H-----cCceEecChHHHhccCCCEEEEecCc
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQ-GHILRATSRTDHS-QL-CH-R-----SGISFFSDKRAFLEADNDVILISTSI 77 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~-g~~V~~~dr~~~~-~~-a~-~-----~g~~~~~~~~~~~~~~aD~iilavp~ 77 (275)
+..++||+|+| .|..|..+.+.|.+. +++|..+.++... +. .. . .......+.+...++++|+||+|+|.
T Consensus 35 ~~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~ 114 (381)
T PLN02968 35 SEEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH 114 (381)
T ss_pred cccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH
Confidence 34667999999 599999999999988 6788887665421 11 11 1 01111112221112789999999999
Q ss_pred hhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897 78 LSLSEVLNSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 78 ~~~~~v~~~l~~~~l~~~~iv~d~~s~ 104 (275)
....+++..+ ..+..++|.++-
T Consensus 115 ~~s~~i~~~~-----~~g~~VIDlSs~ 136 (381)
T PLN02968 115 GTTQEIIKAL-----PKDLKIVDLSAD 136 (381)
T ss_pred HHHHHHHHHH-----hCCCEEEEcCch
Confidence 8777777764 346889998863
No 219
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.51 E-value=0.001 Score=58.59 Aligned_cols=62 Identities=23% Similarity=0.353 Sum_probs=44.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH---------cCceEec--ChHHHhccCCCEEEEec
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR---------SGISFFS--DKRAFLEADNDVILIST 75 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~---------~g~~~~~--~~~~~~~~~aD~iilav 75 (275)
+||+|||+|.+|+++|..|...+. ++.++|++++.. .+.+ ....+.. +.++ ++++|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~--~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYED--LKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhh--hcCCCEEEEeC
Confidence 589999999999999999977753 899999995321 1111 1123333 2455 38999999997
No 220
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.51 E-value=0.00088 Score=59.65 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=45.7
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCChhh--h--HHHH---------cCceEecChHHHhccCCC
Q 023897 11 TLKIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRTDHS--Q--LCHR---------SGISFFSDKRAFLEADND 69 (275)
Q Consensus 11 ~~~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~~~~--~--~a~~---------~g~~~~~~~~~~~~~~aD 69 (275)
.+||+|||+ |.+|+++|..|...|. ++.++|+++.. . .+.+ ..+.+..+..+. +++||
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~-~~daD 80 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVA-FKDAD 80 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHH-hCCCC
Confidence 469999998 9999999999998775 79999995432 1 1111 122333343343 48999
Q ss_pred EEEEecCc
Q 023897 70 VILISTSI 77 (275)
Q Consensus 70 ~iilavp~ 77 (275)
+||++-..
T Consensus 81 ivvitaG~ 88 (322)
T cd01338 81 WALLVGAK 88 (322)
T ss_pred EEEEeCCC
Confidence 99998544
No 221
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.48 E-value=0.00034 Score=61.83 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=45.3
Q ss_pred eEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH-------c---CceE-ecChHHHhccCCCEEEEecCc
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR-------S---GISF-FSDKRAFLEADNDVILISTSI 77 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~-------~---g~~~-~~~~~~~~~~~aD~iilavp~ 77 (275)
||+|||+|.+|+++|..|...+. ++.++|++++.. .+.+ . .+++ ..+.++ +++||+||++...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~--~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDD--CADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHH--hCCCCEEEECCCC
Confidence 79999999999999999998875 799999986422 1111 0 1223 234454 3899999998653
No 222
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.47 E-value=0.00044 Score=61.86 Aligned_cols=89 Identities=10% Similarity=0.182 Sum_probs=56.8
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHCCC---eEEEEcCChh--hhHHHH-cCceEe-cChHHHhccCCCEEEEecCchhHH
Q 023897 10 STLKIGIIG-FGPFGQFLAKTMIKQGH---ILRATSRTDH--SQLCHR-SGISFF-SDKRAFLEADNDVILISTSILSLS 81 (275)
Q Consensus 10 ~~~~I~IIG-~G~mG~sla~~L~~~g~---~V~~~dr~~~--~~~a~~-~g~~~~-~~~~~~~~~~aD~iilavp~~~~~ 81 (275)
.++||+|+| +|.+|.-+.+.|.+.+| ++........ ...... ....+. .+..+ + +++|++|+|+|.....
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~-~~vD~vFla~p~~~s~ 80 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-F-SQVQLAFFAAGAAVSR 80 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-h-cCCCEEEEcCCHHHHH
Confidence 447999999 59999999999998766 3333322211 111100 112221 12233 2 7899999999987666
Q ss_pred HHhhcCCCCCCCCCcEEEeCCCC
Q 023897 82 EVLNSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 82 ~v~~~l~~~~l~~~~iv~d~~s~ 104 (275)
+++..+ ...|..++|.++-
T Consensus 81 ~~v~~~----~~~G~~VIDlS~~ 99 (336)
T PRK05671 81 SFAEKA----RAAGCSVIDLSGA 99 (336)
T ss_pred HHHHHH----HHCCCeEEECchh
Confidence 766665 3457899998863
No 223
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.46 E-value=0.00053 Score=61.53 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=64.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHC-C-CeEEEEcCChhh--hHH---HHcCc--eEecChHHHhccCCCEEEEecCchhHH
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQ-G-HILRATSRTDHS--QLC---HRSGI--SFFSDKRAFLEADNDVILISTSILSLS 81 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~-g-~~V~~~dr~~~~--~~a---~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~ 81 (275)
..+++|||+|..+.+-.+++..- . .+|.+|+|+++. +.+ .+.++ ....+.+++ +.++|+|+.||+.....
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~a-v~~ADIIvtaT~S~~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEA-VEGADIITTVTADKTNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHH-HhcCCEEEEecCCCCCC
Confidence 46799999999999998877764 2 389999999853 222 22243 456788886 58999999999854322
Q ss_pred HHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897 82 EVLNSLPVHCLQRRTLIADVLSVKE 106 (275)
Q Consensus 82 ~v~~~l~~~~l~~~~iv~d~~s~k~ 106 (275)
.++.. .. +++|+.|.-+++-+.
T Consensus 208 Pvl~~-~~--lkpG~hV~aIGs~~p 229 (346)
T PRK07589 208 TILTD-DM--VEPGMHINAVGGDCP 229 (346)
T ss_pred ceecH-HH--cCCCcEEEecCCCCC
Confidence 22221 12 678888887776554
No 224
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.46 E-value=0.00054 Score=60.60 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=56.8
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHCCC--eEEEEcCChhhhHH--HHcC-----ceEe-cC--hHHHhccCCCEEEEecCc-
Q 023897 12 LKIGIIGF-GPFGQFLAKTMIKQGH--ILRATSRTDHSQLC--HRSG-----ISFF-SD--KRAFLEADNDVILISTSI- 77 (275)
Q Consensus 12 ~~I~IIG~-G~mG~sla~~L~~~g~--~V~~~dr~~~~~~a--~~~g-----~~~~-~~--~~~~~~~~aD~iilavp~- 77 (275)
|||+|||+ |.+|+++|..|...+. ++.++|++.....+ .... +... .+ +.+. ++++|+||++...
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~-~~daDivvitaG~~ 79 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKA-LKGADVVVIPAGVP 79 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHh-cCCCCEEEEeCCCC
Confidence 69999999 9999999999998884 89999988211111 1111 2222 22 2333 4899999998654
Q ss_pred ---------------hhHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897 78 ---------------LSLSEVLNSL-PVHCLQRRTLIADVLS 103 (275)
Q Consensus 78 ---------------~~~~~v~~~l-~~~~l~~~~iv~d~~s 103 (275)
..+.++...+ .+ .++.+++.+++
T Consensus 80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~---~p~a~vivvtN 118 (310)
T cd01337 80 RKPGMTRDDLFNINAGIVRDLATAVAKA---CPKALILIISN 118 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHh---CCCeEEEEccC
Confidence 1234555555 33 45677776664
No 225
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.44 E-value=0.00048 Score=60.11 Aligned_cols=77 Identities=8% Similarity=0.139 Sum_probs=58.2
Q ss_pred CCCCCCeEEEEcCCh-HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 7 SSSSTLKIGIIGFGP-FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 7 ~~~~~~~I~IIG~G~-mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
.....++|.|||.|. .|.+++..|.+.|..|+++++.. .++.+. +.++|+||.||+... .+.
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t-------------~~L~~~-~~~aDIvI~AtG~~~---~v~ 217 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT-------------QNLPEL-VKQADIIVGAVGKPE---LIK 217 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc-------------hhHHHH-hccCCEEEEccCCCC---cCC
Confidence 345678999999997 99999999999999999998732 234443 379999999996433 111
Q ss_pred cCCCCCCCCCcEEEeCCC
Q 023897 86 SLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~s 103 (275)
. .. ++++.+++|++.
T Consensus 218 ~-~~--lk~gavViDvg~ 232 (283)
T PRK14192 218 K-DW--IKQGAVVVDAGF 232 (283)
T ss_pred H-HH--cCCCCEEEEEEE
Confidence 1 23 788999999874
No 226
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.44 E-value=0.0012 Score=61.94 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=63.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE-ecC--------------------------hHH
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF-FSD--------------------------KRA 62 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~-~~~--------------------------~~~ 62 (275)
..|+.|+|+|.+|...+..++..|..|+++|+++. .+.++..|... .-+ ..+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e 243 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA 243 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999985 45666666543 001 122
Q ss_pred HhccCCCEEEEec-----Cch--hHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897 63 FLEADNDVILIST-----SIL--SLSEVLNSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 63 ~~~~~aD~iilav-----p~~--~~~~v~~~l~~~~l~~~~iv~d~~s~ 104 (275)
. .+++|+||-|+ |.. ..++.++. +++|.+++|++.-
T Consensus 244 ~-~~~~DIVI~TalipG~~aP~Lit~emv~~-----MKpGsvIVDlA~d 286 (511)
T TIGR00561 244 Q-AKEVDIIITTALIPGKPAPKLITEEMVDS-----MKAGSVIVDLAAE 286 (511)
T ss_pred H-hCCCCEEEECcccCCCCCCeeehHHHHhh-----CCCCCEEEEeeeC
Confidence 2 36899999998 433 23333333 6788899997743
No 227
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.42 E-value=0.00051 Score=59.71 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=59.1
Q ss_pred CCCCCeEEEEcCChH-HHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIGFGPF-GQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG~G~m-G~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....++|+|||.|.+ |..++..|.+.|..|+++... +.++.+. .++||+||.+++...+ +..
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-------------t~~l~~~-~~~ADIVV~avG~~~~---i~~ 217 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-------------TRDLAAH-TRQADIVVAAVGKRNV---LTA 217 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-------------CCCHHHH-hhhCCEEEEcCCCcCc---cCH
Confidence 456789999998776 999999999999999987643 2355554 4899999999996542 111
Q ss_pred CCCCCCCCCcEEEeCCCC
Q 023897 87 LPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s~ 104 (275)
.. +++|++++|++..
T Consensus 218 -~~--ik~gavVIDVGin 232 (285)
T PRK14189 218 -DM--VKPGATVIDVGMN 232 (285)
T ss_pred -HH--cCCCCEEEEcccc
Confidence 23 7899999999853
No 228
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.42 E-value=0.0011 Score=54.94 Aligned_cols=80 Identities=18% Similarity=0.096 Sum_probs=55.9
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhHHHHcC-ceEec-ChHHHhccCCCEEEEecCchhHHHH
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQLCHRSG-ISFFS-DKRAFLEADNDVILISTSILSLSEV 83 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~a~~~g-~~~~~-~~~~~~~~~aD~iilavp~~~~~~v 83 (275)
....++|.|||.|.+|...++.|.+.|++|++++++.. .......+ +.... ...+..+.++|+||.|+..+.+...
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~~ 86 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNEQ 86 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHHH
Confidence 35678999999999999999999999999999987652 22222222 32211 1111113789999999999877666
Q ss_pred hhcC
Q 023897 84 LNSL 87 (275)
Q Consensus 84 ~~~l 87 (275)
+...
T Consensus 87 i~~~ 90 (202)
T PRK06718 87 VKED 90 (202)
T ss_pred HHHH
Confidence 5554
No 229
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.42 E-value=0.00058 Score=60.30 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=56.6
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHCCC-eEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCC
Q 023897 11 TLKIGIIG-FGPFGQFLAKTMIKQGH-ILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLP 88 (275)
Q Consensus 11 ~~~I~IIG-~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~ 88 (275)
++||+||| .|..|.-+.+.|.+... ++.....+.... . .+.++. ..++|++|+|+|.....++..++
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~------~---~~~~~~-~~~~DvvFlalp~~~s~~~~~~~- 70 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD------A---AARREL-LNAADVAILCLPDDAAREAVALI- 70 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc------c---cCchhh-hcCCCEEEECCCHHHHHHHHHHH-
Confidence 57999999 69999999999988753 554443332111 1 122232 36899999999999888887776
Q ss_pred CCCCCCCcEEEeCCC
Q 023897 89 VHCLQRRTLIADVLS 103 (275)
Q Consensus 89 ~~~l~~~~iv~d~~s 103 (275)
...|+.|+|.++
T Consensus 71 ---~~~g~~VIDlSa 82 (313)
T PRK11863 71 ---DNPATRVIDAST 82 (313)
T ss_pred ---HhCCCEEEECCh
Confidence 346889999875
No 230
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.40 E-value=0.00068 Score=63.66 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=51.5
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCceE--ecChHHHhccCCCEEEEecCchh
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISF--FSDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~~--~~~~~~~~~~~aD~iilavp~~~ 79 (275)
....++++|+|+|.+|.+++..|.+.|++|++++|+++. ..+...+... ..+..+ +.++|+||.|+|...
T Consensus 329 ~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~--l~~~DiVInatP~g~ 402 (477)
T PRK09310 329 PLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE--LHRIDIIINCLPPSV 402 (477)
T ss_pred CcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc--cCCCCEEEEcCCCCC
Confidence 345678999999999999999999999999999998742 2233332221 122233 268999999999875
No 231
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.40 E-value=0.0022 Score=59.25 Aligned_cols=91 Identities=15% Similarity=0.115 Sum_probs=59.3
Q ss_pred CCCeEEEEcC-ChHHHHHHHHHHHC-------CC--eEEEEcCChhhhH--HHH---------cCceEecChHHHhccCC
Q 023897 10 STLKIGIIGF-GPFGQFLAKTMIKQ-------GH--ILRATSRTDHSQL--CHR---------SGISFFSDKRAFLEADN 68 (275)
Q Consensus 10 ~~~~I~IIG~-G~mG~sla~~L~~~-------g~--~V~~~dr~~~~~~--a~~---------~g~~~~~~~~~~~~~~a 68 (275)
...||+|||+ |.+|.++|..|... +. ++.++|++++... +.+ ..+.+..+..+. +++|
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~-~kda 177 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEV-FQDA 177 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHH-hCcC
Confidence 4579999999 99999999999987 65 7889999875321 111 123333333343 4899
Q ss_pred CEEEEecCch----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897 69 DVILISTSIL----------------SLSEVLNSL-PVHCLQRRTLIADVLS 103 (275)
Q Consensus 69 D~iilavp~~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s 103 (275)
|+||++.... .+.++...+ .+ ..++.+++.+++
T Consensus 178 DiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~--a~p~~ivIVVsN 227 (444)
T PLN00112 178 EWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEV--ASRNVKVIVVGN 227 (444)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEEcCC
Confidence 9999986541 244555555 42 345666666554
No 232
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.39 E-value=0.00093 Score=59.77 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=60.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHH-CC-CeEEEEcCChhh--hHHH----HcCce--EecChHHHhccCCCEEEEecCchh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIK-QG-HILRATSRTDHS--QLCH----RSGIS--FFSDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~-~g-~~V~~~dr~~~~--~~a~----~~g~~--~~~~~~~~~~~~aD~iilavp~~~ 79 (275)
..++|+|||+|.+|.+.+.++.. .+ .+|.+|+|+++. ..+. +.|+. ...+++++ +.++|+|+.|+|...
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~a-l~~aDiVi~aT~s~~ 209 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEA-VAGADIIVTTTPSEE 209 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHH-HccCCEEEEeeCCCC
Confidence 34689999999999999888885 44 489999999853 2222 22553 45777786 489999999999753
Q ss_pred HHHHhhcCCCCCCCCCcEEEeCCC
Q 023897 80 LSEVLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 80 ~~~v~~~l~~~~l~~~~iv~d~~s 103 (275)
.++.. .. +++++.+..+++
T Consensus 210 --p~i~~-~~--l~~g~~v~~vg~ 228 (330)
T PRK08291 210 --PILKA-EW--LHPGLHVTAMGS 228 (330)
T ss_pred --cEecH-HH--cCCCceEEeeCC
Confidence 22211 11 455666655554
No 233
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.38 E-value=0.00059 Score=61.29 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=59.1
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHCCC---eEEEE--cCChhhhHHHHcCc--eEe-cChHHHhccCCCEEEEecCchh
Q 023897 9 SSTLKIGIIG-FGPFGQFLAKTMIKQGH---ILRAT--SRTDHSQLCHRSGI--SFF-SDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~---~V~~~--dr~~~~~~a~~~g~--~~~-~~~~~~~~~~aD~iilavp~~~ 79 (275)
...+||+|+| .|..|.-+.+.|.+.+| ++... .|+....... .|. .+. .+.+. + .++|++|+|+|...
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-~~~~~~v~~~~~~~-~-~~~D~vf~a~p~~~ 81 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-EGRDYTVEELTEDS-F-DGVDIALFSAGGSI 81 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-cCceeEEEeCCHHH-H-cCCCEEEECCCcHH
Confidence 3457999999 69999999999998776 34332 3333211111 122 221 12233 3 78999999999998
Q ss_pred HHHHhhcCCCCCCCCCcEEEeCCC
Q 023897 80 LSEVLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 80 ~~~v~~~l~~~~l~~~~iv~d~~s 103 (275)
..++..++ ...|+.++|.++
T Consensus 82 s~~~~~~~----~~~g~~VIDlS~ 101 (344)
T PLN02383 82 SKKFGPIA----VDKGAVVVDNSS 101 (344)
T ss_pred HHHHHHHH----HhCCCEEEECCc
Confidence 77877775 346889999886
No 234
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=97.38 E-value=0.035 Score=46.10 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=86.7
Q ss_pred CceEecChHHHhccCCCEEEEecCchhH-HHHhhcC-CCCCCCCCcEEEeCCCCChhHHHH-HHhhCCCCCceeecCCCC
Q 023897 53 GISFFSDKRAFLEADNDVILISTSILSL-SEVLNSL-PVHCLQRRTLIADVLSVKEYPRNV-LLQVLPEEMDVLCTHPMF 129 (275)
Q Consensus 53 g~~~~~~~~~~~~~~aD~iilavp~~~~-~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~-l~~~l~~~~~~v~~hP~~ 129 (275)
|+.++++-+++ ++++|+|+.=.|-... .+++.++ .. +++|+|++..+++...-... +++.-.....+-+.||-.
T Consensus 126 g~~vttddrea-vedad~iitwlpkg~~qpdiikkfidd--ipegaivthactipttkf~kifed~gredlnvtsyhpg~ 202 (343)
T COG4074 126 GIVVTTDDREA-VEDADMIITWLPKGGVQPDIIKKFIDD--IPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSYHPGT 202 (343)
T ss_pred eeEEecCcHhh-hcCCCeEEEeccCCCCCccHHHHHHhc--CCCCceEeeecccchHHHHHHHHHhCccccceeccCCCC
Confidence 44677777786 5899999998887543 4666666 55 78899999988776543333 333333456778889988
Q ss_pred CCCCCcCCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhhhhHHHHH
Q 023897 130 GPESGQNGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQFLTHTIG 193 (275)
Q Consensus 130 g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~~lp~~~a 193 (275)
-|+. +|+.++..+- .++++++.+-++=+......+.++..-..-+.-..|.++.++.
T Consensus 203 vpem-----kgqvyiaegy--aseeavn~lyelg~karg~afk~pa~llgpvcdmcsavtaivy 259 (343)
T COG4074 203 VPEM-----KGQVYIAEGY--ASEEAVNALYELGEKARGLAFKVPAYLLGPVCDMCSAVTAIVY 259 (343)
T ss_pred Cccc-----cCcEEEeccc--ccHHHHHHHHHHHHHhhcccccCcHHhhchHHHHHHHHHHHHH
Confidence 7775 5665544322 3788888887777666556677765555545555666665443
No 235
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.37 E-value=0.00095 Score=59.24 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=65.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCC--CeEEEEcCChhh--hH---HHHcCc--eEecChHHHhccCCCEEEEecCchhH
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQG--HILRATSRTDHS--QL---CHRSGI--SFFSDKRAFLEADNDVILISTSILSL 80 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g--~~V~~~dr~~~~--~~---a~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~ 80 (275)
...+++|||+|..|.+-++++...- .+|.+|+|+++. +. ..+.++ ...++.+++ +.+||+|+.||+...
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~a-v~~ADIV~taT~s~~- 204 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEV-AHAANLIVTTTPSRE- 204 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHH-hcCCCEEEEecCCCC-
Confidence 3468999999999999999887642 389999999853 22 222344 446788886 589999999998653
Q ss_pred HHHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897 81 SEVLNSLPVHCLQRRTLIADVLSVKE 106 (275)
Q Consensus 81 ~~v~~~l~~~~l~~~~iv~d~~s~k~ 106 (275)
.+++. .. +++|+.|.-+++-+.
T Consensus 205 -P~~~~-~~--l~~G~hi~~iGs~~p 226 (315)
T PRK06823 205 -PLLQA-ED--IQPGTHITAVGADSP 226 (315)
T ss_pred -ceeCH-HH--cCCCcEEEecCCCCc
Confidence 33321 12 678888888876544
No 236
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.37 E-value=0.001 Score=51.81 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=61.0
Q ss_pred CCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 7 SSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 7 ~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
.....++|.|+| .+..|..++..|.+.|..|+.++++. .++++. +++||+|+.+++.... +.
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-------------~~l~~~-v~~ADIVvsAtg~~~~---i~ 86 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-------------IQLQSK-VHDADVVVVGSPKPEK---VP 86 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-------------cCHHHH-HhhCCEEEEecCCCCc---cC
Confidence 355778999999 68999999999999999999998652 245554 4899999999997632 11
Q ss_pred cCCCCCCCCCcEEEeCCCCC
Q 023897 86 SLPVHCLQRRTLIADVLSVK 105 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~s~k 105 (275)
. .. +++|++++|++..+
T Consensus 87 ~-~~--ikpGa~Vidvg~~~ 103 (140)
T cd05212 87 T-EW--IKPGATVINCSPTK 103 (140)
T ss_pred H-HH--cCCCCEEEEcCCCc
Confidence 1 23 78999999988544
No 237
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.36 E-value=0.00062 Score=50.93 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=50.0
Q ss_pred EEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-c---C---hHHHhccCCCEEEEecCchhH
Q 023897 14 IGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-S---D---KRAFLEADNDVILISTSILSL 80 (275)
Q Consensus 14 I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-~---~---~~~~~~~~aD~iilavp~~~~ 80 (275)
|.|+|+|.+|..+++.|.+.+.+|++.+++++ ...+.+.|..+. . + ++++-+++++.++++++.+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 57999999999999999997779999999985 466666676321 1 2 222224789999999998753
No 238
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.35 E-value=0.013 Score=52.95 Aligned_cols=168 Identities=19% Similarity=0.241 Sum_probs=99.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh-h---HHHHc--Cc--------------------eEecChHHH
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS-Q---LCHRS--GI--------------------SFFSDKRAF 63 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~-~---~a~~~--g~--------------------~~~~~~~~~ 63 (275)
|.+|.|+|+|..+--+|..+.+.+. +|=+++|.... + .+... +. .+..+.++.
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i 80 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI 80 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence 4589999999999999999998864 68788886421 1 12221 11 123455663
Q ss_pred hccCCCEEEEecCchhHHHHhhcCCCCCCCCCcEEEeCCCCCh--hHHHHHHhhCCCCCceeecCCCCCCCCCc------
Q 023897 64 LEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLSVKE--YPRNVLLQVLPEEMDVLCTHPMFGPESGQ------ 135 (275)
Q Consensus 64 ~~~~aD~iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~k~--~~~~~l~~~l~~~~~~v~~hP~~g~~~~~------ 135 (275)
..+-|.+|+|||.++..+|+++++...++.=.-++-++..-+ -.++.+-...+.++.+|+.-.-+|...--
T Consensus 81 -~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~~~ 159 (429)
T PF10100_consen 81 -EGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQPN 159 (429)
T ss_pred -cccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCCCcc
Confidence 467899999999999999999993222432222222232222 23333333334456666544434433210
Q ss_pred ----CCccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHH
Q 023897 136 ----NGWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKV 181 (275)
Q Consensus 136 ----~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~ 181 (275)
.+.+.. ++.+....+.....++..+++.+|-.+..++.-.+...
T Consensus 160 ~vlt~~vK~k--iYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~ 207 (429)
T PF10100_consen 160 RVLTTAVKKK--IYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAES 207 (429)
T ss_pred eehhhhhhce--EEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhh
Confidence 112222 22222222455788999999999999988874444333
No 239
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=97.35 E-value=0.0006 Score=60.92 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=59.6
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHCCC---eEEEEcCC--hhhhHHH-HcCceEecChHHHhccCCCEEEEecCchhHH
Q 023897 9 SSTLKIGIIG-FGPFGQFLAKTMIKQGH---ILRATSRT--DHSQLCH-RSGISFFSDKRAFLEADNDVILISTSILSLS 81 (275)
Q Consensus 9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~---~V~~~dr~--~~~~~a~-~~g~~~~~~~~~~~~~~aD~iilavp~~~~~ 81 (275)
+..+||+||| +|..|.-|.+.|.+..| ++..+..+ .-..... .....+. +.++....++|++|+|+|.....
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~ 80 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREASA 80 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHHH
Confidence 4668999999 59999999999998543 55544322 2111111 1122332 33332126799999999998777
Q ss_pred HHhhcCCCCCCCCCcEEEeCCC
Q 023897 82 EVLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 82 ~v~~~l~~~~l~~~~iv~d~~s 103 (275)
++..++ ...|..++|.++
T Consensus 81 ~~~~~~----~~~g~~VIDlS~ 98 (336)
T PRK08040 81 AYAEEA----TNAGCLVIDSSG 98 (336)
T ss_pred HHHHHH----HHCCCEEEECCh
Confidence 777776 346889999886
No 240
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.34 E-value=0.0012 Score=58.21 Aligned_cols=91 Identities=19% Similarity=0.105 Sum_probs=64.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHC-C-CeEEEEcCChhh--hHHH----HcCc--eEecChHHHhccCCCEEEEecCchh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQ-G-HILRATSRTDHS--QLCH----RSGI--SFFSDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~-g-~~V~~~dr~~~~--~~a~----~~g~--~~~~~~~~~~~~~aD~iilavp~~~ 79 (275)
...+++|||+|..|.+-+.++... . .+|.+|+|+++. +.+. +.|+ ....+++++ +.+||+|+.||+...
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~ea-v~~aDIV~taT~s~~ 194 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAA-LRDADTITSITNSDT 194 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHH-HhcCCEEEEecCCCC
Confidence 346899999999999999998874 3 389999999853 2222 2353 556788886 589999999999753
Q ss_pred HHHHhhcCCCCCCCCCcEEEeCCCCCh
Q 023897 80 LSEVLNSLPVHCLQRRTLIADVLSVKE 106 (275)
Q Consensus 80 ~~~v~~~l~~~~l~~~~iv~d~~s~k~ 106 (275)
.++.. .. +++|+.|.-+++-+.
T Consensus 195 --P~~~~-~~--l~pg~hV~aiGs~~p 216 (301)
T PRK06407 195 --PIFNR-KY--LGDEYHVNLAGSNYP 216 (301)
T ss_pred --cEecH-HH--cCCCceEEecCCCCC
Confidence 22211 12 677888877776543
No 241
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.32 E-value=0.0013 Score=58.61 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=44.8
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCCh--hhhHH------HH-----cCceEecChHHHhccCCCE
Q 023897 12 LKIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRTD--HSQLC------HR-----SGISFFSDKRAFLEADNDV 70 (275)
Q Consensus 12 ~~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~~--~~~~a------~~-----~g~~~~~~~~~~~~~~aD~ 70 (275)
.||+|||+ |.+|++++..|...|. ++.++|+++ +.... .. .+..+..+..+. +++||+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~-~~~aDi 79 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEA-FKDVDV 79 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHH-hCCCCE
Confidence 38999998 9999999999998663 499999986 32111 10 122333444454 489999
Q ss_pred EEEecCc
Q 023897 71 ILISTSI 77 (275)
Q Consensus 71 iilavp~ 77 (275)
||++--.
T Consensus 80 VVitAG~ 86 (323)
T cd00704 80 AILVGAF 86 (323)
T ss_pred EEEeCCC
Confidence 9988544
No 242
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.32 E-value=0.0016 Score=51.92 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=52.9
Q ss_pred CCCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....++|.|||- +.+|..++..|.+.|..|+.+.... .++++. .++||+||.+++...+ +..
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-------------~~l~~~-~~~ADIVVsa~G~~~~---i~~ 95 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-------------KNLQEI-TRRADIVVSAVGKPNL---IKA 95 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-------------SSHHHH-HTTSSEEEE-SSSTT----B-G
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-------------Ccccce-eeeccEEeeeeccccc---ccc
Confidence 457789999996 5799999999999999999987652 345554 4899999999987543 221
Q ss_pred CCCCCCCCCcEEEeCCCCC
Q 023897 87 LPVHCLQRRTLIADVLSVK 105 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s~k 105 (275)
.. +++|.+++|++...
T Consensus 96 -~~--ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 96 -DW--IKPGAVVIDVGINY 111 (160)
T ss_dssp -GG--S-TTEEEEE--CEE
T ss_pred -cc--ccCCcEEEecCCcc
Confidence 23 78999999998644
No 243
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=97.32 E-value=0.0016 Score=56.89 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=60.2
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccC--CCEEEEecCchhHHHHhhc
Q 023897 10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEAD--NDVILISTSILSLSEVLNS 86 (275)
Q Consensus 10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~--aD~iilavp~~~~~~v~~~ 86 (275)
+..||+|.| .|.+|..+-..+...|++ .++..++..-...-.|+..+.+..++ .+. .|+.++++|...+.+++++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v~G~~~y~sv~dl-p~~~~~Dlavi~vpa~~v~~~l~e 82 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTVLGLPVFDSVKEA-VEETGANASVIFVPAPFAADAIFE 82 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcceecCeeccCCHHHH-hhccCCCEEEEecCHHHHHHHHHH
Confidence 356899999 799999999999999988 56666664212223578888899885 343 6999999999999999998
Q ss_pred C
Q 023897 87 L 87 (275)
Q Consensus 87 l 87 (275)
.
T Consensus 83 ~ 83 (286)
T TIGR01019 83 A 83 (286)
T ss_pred H
Confidence 8
No 244
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.31 E-value=0.00078 Score=59.86 Aligned_cols=71 Identities=18% Similarity=0.296 Sum_probs=47.7
Q ss_pred CCCCCCCeEEEEcC-ChHHHHHHHHHHHCC--CeEEEEcCChhhhHHHH-------cCceEecCh---HHHhccCCCEEE
Q 023897 6 PSSSSTLKIGIIGF-GPFGQFLAKTMIKQG--HILRATSRTDHSQLCHR-------SGISFFSDK---RAFLEADNDVIL 72 (275)
Q Consensus 6 ~~~~~~~~I~IIG~-G~mG~sla~~L~~~g--~~V~~~dr~~~~~~a~~-------~g~~~~~~~---~~~~~~~aD~ii 72 (275)
|+..++.||+|||+ |.+|+++|..|...+ .++.++|++.....+.+ ..+...++. .++ ++++|+||
T Consensus 3 ~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~-l~gaDvVV 81 (321)
T PTZ00325 3 PSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKA-LRGADLVL 81 (321)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHH-hCCCCEEE
Confidence 45567789999998 999999999998665 58999999432111111 112222221 343 48999999
Q ss_pred EecCc
Q 023897 73 ISTSI 77 (275)
Q Consensus 73 lavp~ 77 (275)
++.-.
T Consensus 82 itaG~ 86 (321)
T PTZ00325 82 ICAGV 86 (321)
T ss_pred ECCCC
Confidence 88554
No 245
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.31 E-value=0.0017 Score=51.64 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHc-CceEe-cChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRS-GISFF-SDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~-g~~~~-~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
..+.++|.|||.|.+|...++.|.+.|++|++++++...+. .+. .+... ...++.-+.++|+||.|+..+.+...+.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l-~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~i~ 88 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEM-KELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMVK 88 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHH-HhccCcEEEecccChhcCCCceEEEECCCCHHHHHHHH
Confidence 45678999999999999999999999999999975432111 122 22211 1111111378999999999988766665
Q ss_pred cC
Q 023897 86 SL 87 (275)
Q Consensus 86 ~l 87 (275)
..
T Consensus 89 ~~ 90 (157)
T PRK06719 89 QA 90 (157)
T ss_pred HH
Confidence 55
No 246
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.30 E-value=0.00052 Score=55.25 Aligned_cols=66 Identities=24% Similarity=0.275 Sum_probs=47.5
Q ss_pred CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHH------HHcCceEecChHHHhccCCCEEEEecCch
Q 023897 12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLC------HRSGISFFSDKRAFLEADNDVILISTSIL 78 (275)
Q Consensus 12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a------~~~g~~~~~~~~~~~~~~aD~iilavp~~ 78 (275)
|||+||| .|..|+.+++-..+.||+|+.+-||+....+ .+..+---++..+. +.+.|+||.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~-l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASD-LAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhh-hcCCceEEEeccCC
Confidence 7999999 5999999999999999999999999853222 11122111122343 37899999997653
No 247
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00087 Score=59.25 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=59.5
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHCC-CeEEEEcCCh-h-hhHHHH----cCc---eE-ecChHHHhccCCCEEEEecCc
Q 023897 10 STLKIGIIG-FGPFGQFLAKTMIKQG-HILRATSRTD-H-SQLCHR----SGI---SF-FSDKRAFLEADNDVILISTSI 77 (275)
Q Consensus 10 ~~~~I~IIG-~G~mG~sla~~L~~~g-~~V~~~dr~~-~-~~~a~~----~g~---~~-~~~~~~~~~~~aD~iilavp~ 77 (275)
.++||+|+| .|.-|.-|.+.|.... .++..+..+. . ...... .|. .. .-+.++....++|++|+|+|.
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh 80 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH 80 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence 368999999 5999999999998874 4766655443 1 111111 111 11 112233223568999999999
Q ss_pred hhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897 78 LSLSEVLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 78 ~~~~~v~~~l~~~~l~~~~iv~d~~s 103 (275)
..-.+++.++ +.++..|+|++.
T Consensus 81 g~s~~~v~~l----~~~g~~VIDLSa 102 (349)
T COG0002 81 GVSAELVPEL----LEAGCKVIDLSA 102 (349)
T ss_pred hhHHHHHHHH----HhCCCeEEECCc
Confidence 9888888887 445677999885
No 248
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.29 E-value=0.0017 Score=57.56 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=56.3
Q ss_pred eEEEEcC-ChHHHHHHHHHHHCCC--eEEEEcCChhhhHH--HHcC---ceEe----c-ChHHHhccCCCEEEEecCch-
Q 023897 13 KIGIIGF-GPFGQFLAKTMIKQGH--ILRATSRTDHSQLC--HRSG---ISFF----S-DKRAFLEADNDVILISTSIL- 78 (275)
Q Consensus 13 ~I~IIG~-G~mG~sla~~L~~~g~--~V~~~dr~~~~~~a--~~~g---~~~~----~-~~~~~~~~~aD~iilavp~~- 78 (275)
||+|||+ |.+|+++|..|...++ ++.++|+++....+ .... ..+. . ++.+. ++++|+||++....
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~-~~daDivvitaG~~~ 79 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENA-LKGADVVVIPAGVPR 79 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHH-cCCCCEEEEeCCCCC
Confidence 7999999 9999999999998875 79999998721111 1111 2222 1 22343 48999999986541
Q ss_pred ---------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897 79 ---------------SLSEVLNSL-PVHCLQRRTLIADVLS 103 (275)
Q Consensus 79 ---------------~~~~v~~~l-~~~~l~~~~iv~d~~s 103 (275)
.+.++...+ .+ .++.+++.+++
T Consensus 80 ~~g~~R~dll~~N~~I~~~i~~~i~~~---~p~~iiivvsN 117 (312)
T TIGR01772 80 KPGMTRDDLFNVNAGIVKDLVAAVAES---CPKAMILVITN 117 (312)
T ss_pred CCCccHHHHHHHhHHHHHHHHHHHHHh---CCCeEEEEecC
Confidence 234555555 33 45666666654
No 249
>PLN00106 malate dehydrogenase
Probab=97.29 E-value=0.0027 Score=56.46 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=45.3
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHCCC--eEEEEcCChhhhHHHH-------cCceE---ecChHHHhccCCCEEEEecCc
Q 023897 11 TLKIGIIGF-GPFGQFLAKTMIKQGH--ILRATSRTDHSQLCHR-------SGISF---FSDKRAFLEADNDVILISTSI 77 (275)
Q Consensus 11 ~~~I~IIG~-G~mG~sla~~L~~~g~--~V~~~dr~~~~~~a~~-------~g~~~---~~~~~~~~~~~aD~iilavp~ 77 (275)
..||+|||+ |++|+++|..|..++. ++.++|+++....+.+ ..+.. .+++.++ ++++|+||++.-.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~-l~~aDiVVitAG~ 96 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDA-LKGADLVIIPAGV 96 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHH-cCCCCEEEEeCCC
Confidence 359999998 9999999999997765 8999999872111111 11121 2233454 4899999998553
No 250
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.27 E-value=0.0011 Score=57.66 Aligned_cols=77 Identities=12% Similarity=0.221 Sum_probs=58.8
Q ss_pred CCCCCCeEEEEcCCh-HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 7 SSSSTLKIGIIGFGP-FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 7 ~~~~~~~I~IIG~G~-mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
.....++|.|||-|. +|..++..|.+.|..|+++.+.. .++.+. .++||+||.|++-..+ +-.
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T-------------~~l~~~-~~~ADIvi~avG~p~~--v~~ 218 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT-------------KNLRHH-VRNADLLVVAVGKPGF--IPG 218 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC-------------CCHHHH-HhhCCEEEEcCCCccc--ccH
Confidence 345678999999877 99999999999999999987542 355664 4899999999964432 111
Q ss_pred cCCCCCCCCCcEEEeCCC
Q 023897 86 SLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~s 103 (275)
.. +++|++++|++.
T Consensus 219 --~~--vk~gavVIDvGi 232 (285)
T PRK10792 219 --EW--IKPGAIVIDVGI 232 (285)
T ss_pred --HH--cCCCcEEEEccc
Confidence 23 788999999983
No 251
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.25 E-value=0.0011 Score=58.83 Aligned_cols=88 Identities=17% Similarity=0.225 Sum_probs=65.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHC-C-CeEEEEcCChhh--hHH---HH-cC--ceEecChHHHhccCCCEEEEecCchhH
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQ-G-HILRATSRTDHS--QLC---HR-SG--ISFFSDKRAFLEADNDVILISTSILSL 80 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~-g-~~V~~~dr~~~~--~~a---~~-~g--~~~~~~~~~~~~~~aD~iilavp~~~~ 80 (275)
-..++|||+|..+..-..++..- + -+|.+|+|+++. +.+ .+ .+ +....+.+++ +++||+|+-|||...
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~a-v~~aDiIvt~T~s~~- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEA-VEGADIVVTATPSTE- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHH-hhcCCEEEEecCCCC-
Confidence 35799999999999999999875 3 389999999852 222 22 23 3567788886 589999999999876
Q ss_pred HHHhhcCCCCCCCCCcEEEeCCCC
Q 023897 81 SEVLNSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 81 ~~v~~~l~~~~l~~~~iv~d~~s~ 104 (275)
.++.. .. +++|+.|.-+++-
T Consensus 208 -Pil~~-~~--l~~G~hI~aiGad 227 (330)
T COG2423 208 -PVLKA-EW--LKPGTHINAIGAD 227 (330)
T ss_pred -CeecH-hh--cCCCcEEEecCCC
Confidence 33222 23 7888888877763
No 252
>PRK10206 putative oxidoreductase; Provisional
Probab=97.25 E-value=0.00093 Score=60.14 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=53.0
Q ss_pred CCeEEEEcCChHHH-HHHHHHHH--CCCeEE-EEcCChhh-hHHHHcC-ceEecChHHHhc-cCCCEEEEecCchhHHHH
Q 023897 11 TLKIGIIGFGPFGQ-FLAKTMIK--QGHILR-ATSRTDHS-QLCHRSG-ISFFSDKRAFLE-ADNDVILISTSILSLSEV 83 (275)
Q Consensus 11 ~~~I~IIG~G~mG~-sla~~L~~--~g~~V~-~~dr~~~~-~~a~~~g-~~~~~~~~~~~~-~~aD~iilavp~~~~~~v 83 (275)
+.||||||+|.++. ..+..+.. .+++|. ++|++++. +.+.+.+ +..+++.++++. .+.|+|++|+|+....++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~ 80 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY 80 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence 36899999999875 33454533 256766 58888743 3344454 567788998642 256999999999877776
Q ss_pred hhcC
Q 023897 84 LNSL 87 (275)
Q Consensus 84 ~~~l 87 (275)
....
T Consensus 81 ~~~a 84 (344)
T PRK10206 81 AKRA 84 (344)
T ss_pred HHHH
Confidence 6654
No 253
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.23 E-value=0.0024 Score=56.98 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=45.4
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHCC-------CeEEEEcCChhh--hHHHH-----------cCceEecChHHHhccCCC
Q 023897 11 TLKIGIIGF-GPFGQFLAKTMIKQG-------HILRATSRTDHS--QLCHR-----------SGISFFSDKRAFLEADND 69 (275)
Q Consensus 11 ~~~I~IIG~-G~mG~sla~~L~~~g-------~~V~~~dr~~~~--~~a~~-----------~g~~~~~~~~~~~~~~aD 69 (275)
..||+|+|+ |.+|++++..|...+ .+|.++|+++.. ..... ..+....+..+. ++++|
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~-l~~aD 80 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEA-FKDVD 80 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHH-hCCCC
Confidence 468999998 999999999998854 489999996521 11111 112234555454 48999
Q ss_pred EEEEecCc
Q 023897 70 VILISTSI 77 (275)
Q Consensus 70 ~iilavp~ 77 (275)
+||++.-.
T Consensus 81 iVI~tAG~ 88 (325)
T cd01336 81 VAILVGAM 88 (325)
T ss_pred EEEEeCCc
Confidence 99988543
No 254
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0013 Score=57.31 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=70.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHc---Cc----eEecChHHHhccCCCEEEEecCchh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRS---GI----SFFSDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~---g~----~~~~~~~~~~~~~aD~iilavp~~~ 79 (275)
...++.|+|+|-.+++++..|++.|. +|++++|+.+. +.+... +. ....+++. ..++|+||-|||...
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~--~~~~dliINaTp~Gm 202 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEG--LEEADLLINATPVGM 202 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccccccccccc--ccccCEEEECCCCCC
Confidence 45789999999999999999999995 89999999853 233222 21 11122322 125899999999864
Q ss_pred HHHHhhcC-CCCCCCCCcEEEeCCCC--ChhHHHHHHhhCCCCCceeecCCC
Q 023897 80 LSEVLNSL-PVHCLQRRTLIADVLSV--KEYPRNVLLQVLPEEMDVLCTHPM 128 (275)
Q Consensus 80 ~~~v~~~l-~~~~l~~~~iv~d~~s~--k~~~~~~l~~~l~~~~~~v~~hP~ 128 (275)
....-..+ +...++++.++.|+--. .++.++..++. +.+++.+..|
T Consensus 203 ~~~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL~~A~~~---G~~~idGl~M 251 (283)
T COG0169 203 AGPEGDSPVPAELLPKGAIVYDVVYNPLETPLLREARAQ---GAKTIDGLGM 251 (283)
T ss_pred CCCCCCCCCcHHhcCcCCEEEEeccCCCCCHHHHHHHHc---CCeEECcHHH
Confidence 33211111 11126788899997633 34444444432 3445555444
No 255
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.22 E-value=0.005 Score=56.01 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=56.4
Q ss_pred CCCCeEEEEcC-ChHHHHHHHHHHHCCC-e------EEEE--cCChhhhHH--HH---------cCceEecChHHHhccC
Q 023897 9 SSTLKIGIIGF-GPFGQFLAKTMIKQGH-I------LRAT--SRTDHSQLC--HR---------SGISFFSDKRAFLEAD 67 (275)
Q Consensus 9 ~~~~~I~IIG~-G~mG~sla~~L~~~g~-~------V~~~--dr~~~~~~a--~~---------~g~~~~~~~~~~~~~~ 67 (275)
....||+|||+ |.+|.++|..|...|. + +.++ |++.+...+ .+ .++.++++..+. +++
T Consensus 42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~-~kd 120 (387)
T TIGR01757 42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEV-FED 120 (387)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHH-hCC
Confidence 34579999999 9999999999998764 2 3345 766643211 11 123333343343 489
Q ss_pred CCEEEEecCch----------------hHHHHhhcC-CCCCCCCCcEEEeCCC
Q 023897 68 NDVILISTSIL----------------SLSEVLNSL-PVHCLQRRTLIADVLS 103 (275)
Q Consensus 68 aD~iilavp~~----------------~~~~v~~~l-~~~~l~~~~iv~d~~s 103 (275)
+|+||++.... .+.++...+ .+ .+++.+++-+++
T Consensus 121 aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~--a~~~~iviVVsN 171 (387)
T TIGR01757 121 ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAV--ASKNCKVLVVGN 171 (387)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCCeEEEEcCC
Confidence 99999975431 144555555 43 446666665553
No 256
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.21 E-value=0.00088 Score=64.77 Aligned_cols=71 Identities=18% Similarity=0.319 Sum_probs=54.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE-e---cChH---HHhccCCCEEEEecCchhHH
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF-F---SDKR---AFLEADNDVILISTSILSLS 81 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~-~---~~~~---~~~~~~aD~iilavp~~~~~ 81 (275)
.++|.|+|+|++|..+++.|.+.|+++++.|.|++ .+.+++.|..+ . ++.+ ++-++++|.++++++.+...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n 478 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDT 478 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHH
Confidence 46899999999999999999999999999999996 46666677632 1 2222 21146899999999987543
No 257
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.20 E-value=0.0026 Score=59.84 Aligned_cols=89 Identities=22% Similarity=0.318 Sum_probs=63.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-cCh----------------H------HHh-
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-SDK----------------R------AFL- 64 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-~~~----------------~------~~~- 64 (275)
...||.|+|+|.+|...+..++..|.+|+++|++++ .+.+++.|.+.. -+. + +.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~ 243 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFA 243 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHH
Confidence 356999999999999999999999999999999995 577788887521 100 1 000
Q ss_pred --ccCCCEEEEecCch------h-HHHHhhcCCCCCCCCCcEEEeCCC
Q 023897 65 --EADNDVILISTSIL------S-LSEVLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 65 --~~~aD~iilavp~~------~-~~~v~~~l~~~~l~~~~iv~d~~s 103 (275)
..++|++|-|+... . ..+.++. +++|.+++|++.
T Consensus 244 ~~~~gaDVVIetag~pg~~aP~lit~~~v~~-----mkpGgvIVdvg~ 286 (509)
T PRK09424 244 EQAKEVDIIITTALIPGKPAPKLITAEMVAS-----MKPGSVIVDLAA 286 (509)
T ss_pred hccCCCCEEEECCCCCcccCcchHHHHHHHh-----cCCCCEEEEEcc
Confidence 14699999998642 1 2333333 677888888764
No 258
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.18 E-value=0.0013 Score=53.78 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=63.0
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHH--HcCceEe--cC----hHHHhccCCCEEEEecCch
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCH--RSGISFF--SD----KRAFLEADNDVILISTSIL 78 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~--~~g~~~~--~~----~~~~~~~~aD~iilavp~~ 78 (275)
....++|.||| ...+|..+|..|.+.|..|+++|.+....... ..+-..+ .+ +.+. .++||+||.|++..
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~-~~~ADIVIsAvG~~ 137 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDC-LSQSDVVITGVPSP 137 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHH-hhhCCEEEEccCCC
Confidence 56778999999 67899999999999999999997654211100 0000111 12 4564 48999999999976
Q ss_pred hHHHHhhcCCCCCCCCCcEEEeCCCCC
Q 023897 79 SLSEVLNSLPVHCLQRRTLIADVLSVK 105 (275)
Q Consensus 79 ~~~~v~~~l~~~~l~~~~iv~d~~s~k 105 (275)
.+. +.. .. +++|++++|++..+
T Consensus 138 ~~~--i~~-d~--ik~GavVIDVGi~~ 159 (197)
T cd01079 138 NYK--VPT-EL--LKDGAICINFASIK 159 (197)
T ss_pred CCc--cCH-HH--cCCCcEEEEcCCCc
Confidence 541 110 22 78899999998654
No 259
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.18 E-value=0.0022 Score=57.54 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=56.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHC--CCeEE-EEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCc----hhH
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQ--GHILR-ATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSI----LSL 80 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~--g~~V~-~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~----~~~ 80 (275)
...||+|||+ .||...+.++.+. ++++. ++|++++. +.+.+.|+..+++.+++ +.+.|++++++|. ..-
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eel-l~d~Di~~V~ipt~~P~~~H 79 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEEL-PDDIDIACVVVRSAIVGGQG 79 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHH-hcCCCEEEEEeCCCCCCccH
Confidence 4579999999 6899999999875 46766 48888853 56777898888999996 4778888888754 343
Q ss_pred HHHhhcC
Q 023897 81 SEVLNSL 87 (275)
Q Consensus 81 ~~v~~~l 87 (275)
.++..+.
T Consensus 80 ~e~a~~a 86 (343)
T TIGR01761 80 SALARAL 86 (343)
T ss_pred HHHHHHH
Confidence 4554444
No 260
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.17 E-value=0.0018 Score=58.08 Aligned_cols=90 Identities=13% Similarity=0.171 Sum_probs=59.5
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHH-CCCe---EEEEcC--ChhhhHH-HHcCceEe-cChHHHhccCCCEEEEecCchh
Q 023897 9 SSTLKIGIIG-FGPFGQFLAKTMIK-QGHI---LRATSR--TDHSQLC-HRSGISFF-SDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 9 ~~~~~I~IIG-~G~mG~sla~~L~~-~g~~---V~~~dr--~~~~~~a-~~~g~~~~-~~~~~~~~~~aD~iilavp~~~ 79 (275)
...+||+||| .|..|+-|.+.|.+ ..++ +..+.. +.-.... ......+. .+.++ . .+.|++|+|+|...
T Consensus 3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~-~~~Divf~a~~~~~ 80 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-F-EGVDIAFFSAGGEV 80 (347)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-h-cCCCEEEECCChHH
Confidence 3457999999 59999999999995 5665 544432 2211110 00122221 23444 2 78999999999988
Q ss_pred HHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897 80 LSEVLNSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 80 ~~~v~~~l~~~~l~~~~iv~d~~s~ 104 (275)
..++...+ ...|+.++|.++.
T Consensus 81 s~~~~~~~----~~~G~~VID~Ss~ 101 (347)
T PRK06728 81 SRQFVNQA----VSSGAIVIDNTSE 101 (347)
T ss_pred HHHHHHHH----HHCCCEEEECchh
Confidence 77777776 3568899998863
No 261
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.17 E-value=0.0011 Score=63.67 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=52.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE-e---cCh---HHHhccCCCEEEEecCchh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF-F---SDK---RAFLEADNDVILISTSILS 79 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~-~---~~~---~~~~~~~aD~iilavp~~~ 79 (275)
+.+|.|+|+|++|+.+++.|.+.|++|++.|.|++ .+.+++.|... . ++. +++-++++|.++++++.+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~ 493 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGY 493 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChH
Confidence 35799999999999999999999999999999985 45666667632 1 122 2222368999999998864
No 262
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.16 E-value=0.001 Score=59.03 Aligned_cols=91 Identities=18% Similarity=0.244 Sum_probs=53.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHC-C-CeEEEEcCChhh--hHH---HHcCc--eEecChHHHhccCCCEEEEecCchhHH
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQ-G-HILRATSRTDHS--QLC---HRSGI--SFFSDKRAFLEADNDVILISTSILSLS 81 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~-g-~~V~~~dr~~~~--~~a---~~~g~--~~~~~~~~~~~~~aD~iilavp~~~~~ 81 (275)
..+++|||+|..|.+-+.++... + .+|.+|+|+++. +.+ .+.++ ....+.+++ +++||+|+.|||.....
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~a-v~~aDii~taT~s~~~~ 206 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEA-VRGADIIVTATPSTTPA 206 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHH-HTTSSEEEE----SSEE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhh-cccCCEEEEccCCCCCC
Confidence 35899999999999999988774 3 389999999842 211 22344 457788886 58999999999976421
Q ss_pred HHhhcCCCCCCCCCcEEEeCCCCC
Q 023897 82 EVLNSLPVHCLQRRTLIADVLSVK 105 (275)
Q Consensus 82 ~v~~~l~~~~l~~~~iv~d~~s~k 105 (275)
.++.. .. +++|+.|..+++-+
T Consensus 207 P~~~~-~~--l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 207 PVFDA-EW--LKPGTHINAIGSYT 227 (313)
T ss_dssp ESB-G-GG--S-TT-EEEE-S-SS
T ss_pred ccccH-HH--cCCCcEEEEecCCC
Confidence 22221 12 68888888887644
No 263
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.15 E-value=0.0028 Score=56.55 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=42.8
Q ss_pred eEEEEcC-ChHHHHHHHHHHHCCC-------eEEEEcCChhh--hHHHH-----------cCceEecChHHHhccCCCEE
Q 023897 13 KIGIIGF-GPFGQFLAKTMIKQGH-------ILRATSRTDHS--QLCHR-----------SGISFFSDKRAFLEADNDVI 71 (275)
Q Consensus 13 ~I~IIG~-G~mG~sla~~L~~~g~-------~V~~~dr~~~~--~~a~~-----------~g~~~~~~~~~~~~~~aD~i 71 (275)
||+|||+ |.+|++++..|...+. ++.++|+++.. ..+.. .++...++..+. ++++|+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~-~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVA-FTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHH-hCCCCEE
Confidence 6999999 9999999999998653 59999986532 11111 111222243343 4899999
Q ss_pred EEecCc
Q 023897 72 LISTSI 77 (275)
Q Consensus 72 ilavp~ 77 (275)
|++...
T Consensus 80 VitAG~ 85 (324)
T TIGR01758 80 ILVGAF 85 (324)
T ss_pred EEcCCC
Confidence 998544
No 264
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.14 E-value=0.00063 Score=62.11 Aligned_cols=84 Identities=15% Similarity=0.254 Sum_probs=54.4
Q ss_pred EEEEcCChHHHHHHHHHHHCC-C-eEEEEcCChhh-h-HHHH---cCceE----ecC---hHHHhccCCCEEEEecCchh
Q 023897 14 IGIIGFGPFGQFLAKTMIKQG-H-ILRATSRTDHS-Q-LCHR---SGISF----FSD---KRAFLEADNDVILISTSILS 79 (275)
Q Consensus 14 I~IIG~G~mG~sla~~L~~~g-~-~V~~~dr~~~~-~-~a~~---~g~~~----~~~---~~~~~~~~aD~iilavp~~~ 79 (275)
|.|+|+|.+|+.+++.|.+.+ + +|++.||+.+. + .+.+ ..+.. ..+ +.++ ++++|+||-|+|+..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~dvVin~~gp~~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAEL-LRGCDVVINCAGPFF 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHH-HTTSSEEEE-SSGGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHH-HhcCCEEEECCccch
Confidence 789999999999999999986 4 89999999853 2 2221 12211 122 3454 489999999999976
Q ss_pred HHHHhhcCCCCCCCCCcEEEeCC
Q 023897 80 LSEVLNSLPVHCLQRRTLIADVL 102 (275)
Q Consensus 80 ~~~v~~~l~~~~l~~~~iv~d~~ 102 (275)
...+++.. +..|.-.+|.+
T Consensus 80 ~~~v~~~~----i~~g~~yvD~~ 98 (386)
T PF03435_consen 80 GEPVARAC----IEAGVHYVDTS 98 (386)
T ss_dssp HHHHHHHH----HHHT-EEEESS
T ss_pred hHHHHHHH----HHhCCCeeccc
Confidence 56666554 33455666643
No 265
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.11 E-value=0.0026 Score=51.38 Aligned_cols=62 Identities=24% Similarity=0.359 Sum_probs=46.7
Q ss_pred EEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEe----cC---hHHHhccCCCEEEEecCc
Q 023897 14 IGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFF----SD---KRAFLEADNDVILISTSI 77 (275)
Q Consensus 14 I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~----~~---~~~~~~~~aD~iilavp~ 77 (275)
|.|+|+ |.+|..+++.|.+.|++|++..|++..... ..++++. .+ ..++ +.++|.||.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~a-l~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAA-LKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHH-HTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhh-hhhcchhhhhhhh
Confidence 789995 999999999999999999999999863222 4444321 22 3443 4799999999984
No 266
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.09 E-value=0.0022 Score=56.55 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=42.5
Q ss_pred EEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh--HHHH---------cCceEecChHHHhccCCCEEEEecCc
Q 023897 16 IIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ--LCHR---------SGISFFSDKRAFLEADNDVILISTSI 77 (275)
Q Consensus 16 IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~--~a~~---------~g~~~~~~~~~~~~~~aD~iilavp~ 77 (275)
|||+|.+|+++|..|...+. ++.++|++++.. .+.+ ..+.+..+..+. +++||+||++...
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~-~~daDivVitag~ 74 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSD-CKDADLVVITAGA 74 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHH-HCCCCEEEECCCC
Confidence 69999999999999998875 799999987421 2211 122333333333 3899999998654
No 267
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.07 E-value=0.0008 Score=56.34 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=50.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHH--HCCCeEEE-EcCChhhhHHHHcCceE--ecChHHHhc-cCCCEEEEecCchhHHHH
Q 023897 10 STLKIGIIGFGPFGQFLAKTMI--KQGHILRA-TSRTDHSQLCHRSGISF--FSDKRAFLE-ADNDVILISTSILSLSEV 83 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~--~~g~~V~~-~dr~~~~~~a~~~g~~~--~~~~~~~~~-~~aD~iilavp~~~~~~v 83 (275)
...+|+|||+|.+|..++..+. ..|+++.+ +|+++......-.|..+ ..++.+.+. .+.|.+++|+|.....++
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i 162 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEV 162 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHH
Confidence 3468999999999999998643 45787775 68776421111122222 234455321 248999999999877666
Q ss_pred hhcC
Q 023897 84 LNSL 87 (275)
Q Consensus 84 ~~~l 87 (275)
...+
T Consensus 163 ~~~l 166 (213)
T PRK05472 163 ADRL 166 (213)
T ss_pred HHHH
Confidence 6555
No 268
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.07 E-value=0.0015 Score=56.70 Aligned_cols=76 Identities=16% Similarity=0.274 Sum_probs=57.9
Q ss_pred CCCCCeEEEEcCC-hHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIGFG-PFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG~G-~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....++|.|||-| .+|..+|..|.+.|..|+++.... .++.+. .++||+||.|++...+ +..
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t-------------~~l~~~-~~~ADIvV~AvG~p~~---i~~ 216 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT-------------KDLSFY-TQNADIVCVGVGKPDL---IKA 216 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc-------------HHHHHH-HHhCCEEEEecCCCCc---CCH
Confidence 4567899999987 999999999999999999875332 233443 4899999999986643 111
Q ss_pred CCCCCCCCCcEEEeCCC
Q 023897 87 LPVHCLQRRTLIADVLS 103 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s 103 (275)
.. +++|.+++|++.
T Consensus 217 -~~--vk~GavVIDvGi 230 (285)
T PRK14191 217 -SM--VKKGAVVVDIGI 230 (285)
T ss_pred -HH--cCCCcEEEEeec
Confidence 23 788999999884
No 269
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.07 E-value=0.0034 Score=53.04 Aligned_cols=89 Identities=12% Similarity=0.179 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCC---eEEEEcCC----hhh---------hHHHHcCc-eEecChHHHhccCCCEE
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGH---ILRATSRT----DHS---------QLCHRSGI-SFFSDKRAFLEADNDVI 71 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~---~V~~~dr~----~~~---------~~a~~~g~-~~~~~~~~~~~~~aD~i 71 (275)
.+.+||.|+|+|.+|.+++..|.+.|. +|+++||+ .+. ..+...+. ....++.+. +.++|++
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~-l~~~dvl 101 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEA-LKGADVF 101 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHH-HhcCCEE
Confidence 456799999999999999999999996 59999998 221 12233221 111356554 3789999
Q ss_pred EEecCchhH-HHHhhcCCCCCCCCCcEEEeCCC
Q 023897 72 LISTSILSL-SEVLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 72 ilavp~~~~-~~v~~~l~~~~l~~~~iv~d~~s 103 (275)
|-++|+..+ .+.++. +.++.+++++.+
T Consensus 102 IgaT~~G~~~~~~l~~-----m~~~~ivf~lsn 129 (226)
T cd05311 102 IGVSRPGVVKKEMIKK-----MAKDPIVFALAN 129 (226)
T ss_pred EeCCCCCCCCHHHHHh-----hCCCCEEEEeCC
Confidence 999985543 344444 345567777663
No 270
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=97.05 E-value=0.0043 Score=54.33 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=58.0
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccC--CCEEEEecCchhHHHHhhc
Q 023897 10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEAD--NDVILISTSILSLSEVLNS 86 (275)
Q Consensus 10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~--aD~iilavp~~~~~~v~~~ 86 (275)
+..||+|.| .|.+|+.+.+.|.+.|++ .+|-.+|..-...-.|+..+.++.++ .+. .|+.++++|.+.+.+++++
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v~G~~~y~sv~dl-p~~~~~DlAvi~vp~~~v~~~l~e 84 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTVLGLPVFNTVAEA-VEATGANASVIYVPPPFAADAILE 84 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeEeCeeccCCHHHH-hhccCCCEEEEEcCHHHHHHHHHH
Confidence 457899999 699999999999998886 45444443000112477788899885 344 7999999999999999998
Q ss_pred C
Q 023897 87 L 87 (275)
Q Consensus 87 l 87 (275)
.
T Consensus 85 ~ 85 (291)
T PRK05678 85 A 85 (291)
T ss_pred H
Confidence 8
No 271
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.03 E-value=0.0031 Score=56.90 Aligned_cols=89 Identities=18% Similarity=0.249 Sum_probs=59.7
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHCCC-eEEEEcCChh-h--hHH--H-H----------cCceEe-cChHHHhccCCCE
Q 023897 10 STLKIGIIG-FGPFGQFLAKTMIKQGH-ILRATSRTDH-S--QLC--H-R----------SGISFF-SDKRAFLEADNDV 70 (275)
Q Consensus 10 ~~~~I~IIG-~G~mG~sla~~L~~~g~-~V~~~dr~~~-~--~~a--~-~----------~g~~~~-~~~~~~~~~~aD~ 70 (275)
+++||+|+| .|.+|+.+.+.|.+... ++.++.+++. . ... . . ....+. .+++. + .++|+
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~Dv 79 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-V-DDVDI 79 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-h-cCCCE
Confidence 358999998 79999999999987653 7777744432 1 111 0 0 011221 23444 3 68999
Q ss_pred EEEecCchhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897 71 ILISTSILSLSEVLNSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 71 iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~ 104 (275)
||.|+|.....++...+ ...|..++|.++.
T Consensus 80 Vf~a~p~~~s~~~~~~~----~~~G~~vIDls~~ 109 (349)
T PRK08664 80 VFSALPSDVAGEVEEEF----AKAGKPVFSNASA 109 (349)
T ss_pred EEEeCChhHHHHHHHHH----HHCCCEEEECCch
Confidence 99999998777777665 2457788888763
No 272
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.03 E-value=0.0011 Score=53.36 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=52.3
Q ss_pred CCCeEEEEcCChHHHHHHHHH--HHCCCeEE-EEcCChhhhHHHHcCceE--ecChHHHhc-cCCCEEEEecCchhHHHH
Q 023897 10 STLKIGIIGFGPFGQFLAKTM--IKQGHILR-ATSRTDHSQLCHRSGISF--FSDKRAFLE-ADNDVILISTSILSLSEV 83 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L--~~~g~~V~-~~dr~~~~~~a~~~g~~~--~~~~~~~~~-~~aD~iilavp~~~~~~v 83 (275)
++.++.|||+|++|.+++..- .+.|.+++ ++|.+++..-..-.++.+ .++++..+. .+.|+.++|||.....++
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~v 162 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQEV 162 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHHHHHH
Confidence 456899999999999998643 34567655 689988631111122322 234444321 278999999999888888
Q ss_pred hhcC
Q 023897 84 LNSL 87 (275)
Q Consensus 84 ~~~l 87 (275)
.+.+
T Consensus 163 ad~L 166 (211)
T COG2344 163 ADRL 166 (211)
T ss_pred HHHH
Confidence 8877
No 273
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.02 E-value=0.0027 Score=59.40 Aligned_cols=65 Identities=22% Similarity=0.328 Sum_probs=48.3
Q ss_pred CCCeEEEEcCChHHHH-HHHHHHHCCCeEEEEcCChh--hhHHHHcCceEec-ChHHHhccCCCEEEEec
Q 023897 10 STLKIGIIGFGPFGQF-LAKTMIKQGHILRATSRTDH--SQLCHRSGISFFS-DKRAFLEADNDVILIST 75 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~s-la~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~-~~~~~~~~~aD~iilav 75 (275)
..++|.|||+|..|.+ +|+.|.+.|++|+++|.++. .....+.|+.+.. ...+. +.++|+||++-
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~-~~~~d~vv~sp 74 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAEN-IKDADVVVYSS 74 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHH-CCCCCEEEECC
Confidence 4568999999999999 89999999999999998753 2233445776532 22232 36899998873
No 274
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.02 E-value=0.0038 Score=45.91 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=50.0
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE-ecChHHHhccCCCEEEEecCchhHHHHhhcC
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF-FSDKRAFLEADNDVILISTSILSLSEVLNSL 87 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~-~~~~~~~~~~~aD~iilavp~~~~~~v~~~l 87 (275)
.+..+|.|||.|.+|..=++.|.+.|.+|++++++.. ..+..++. ....++. ++++|+||.|+......+.+...
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~---~~~~~i~~~~~~~~~~-l~~~~lV~~at~d~~~n~~i~~~ 80 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIE---FSEGLIQLIRREFEED-LDGADLVFAATDDPELNEAIYAD 80 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEH---HHHTSCEEEESS-GGG-CTTESEEEE-SS-HHHHHHHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchh---hhhhHHHHHhhhHHHH-HhhheEEEecCCCHHHHHHHHHH
Confidence 4568999999999999999999999999999998841 11112211 1222332 47899999999887665544443
No 275
>PRK05086 malate dehydrogenase; Provisional
Probab=97.01 E-value=0.0041 Score=55.16 Aligned_cols=65 Identities=23% Similarity=0.280 Sum_probs=44.2
Q ss_pred CeEEEEcC-ChHHHHHHHHHHH-C--CCeEEEEcCChhh-h--HHHHc-C--ceE----ecChHHHhccCCCEEEEecCc
Q 023897 12 LKIGIIGF-GPFGQFLAKTMIK-Q--GHILRATSRTDHS-Q--LCHRS-G--ISF----FSDKRAFLEADNDVILISTSI 77 (275)
Q Consensus 12 ~~I~IIG~-G~mG~sla~~L~~-~--g~~V~~~dr~~~~-~--~a~~~-g--~~~----~~~~~~~~~~~aD~iilavp~ 77 (275)
|||+|||+ |.+|.+++..|.. . ++++.++|+++.. . .-... + ..+ .+++.+. ++++|+||+|...
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~-l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPA-LEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHH-cCCCCEEEEcCCC
Confidence 79999998 9999999988855 2 4589999987632 1 11111 1 122 2354454 4899999999765
No 276
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.00 E-value=0.0028 Score=55.10 Aligned_cols=78 Identities=15% Similarity=0.296 Sum_probs=59.1
Q ss_pred CCCCCCeEEEEcCCh-HHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 7 SSSSTLKIGIIGFGP-FGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 7 ~~~~~~~I~IIG~G~-mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
.....+++.|||-|. +|..++..|.+.|..|+++.... .++.+. .++||+||.|+.-..+ +.
T Consensus 160 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T-------------~~l~~~-~~~ADIvv~AvG~p~~---i~ 222 (287)
T PRK14176 160 VDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT-------------DDLKKY-TLDADILVVATGVKHL---IK 222 (287)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC-------------CCHHHH-HhhCCEEEEccCCccc---cC
Confidence 345678999999877 99999999999999999987432 345554 4899999998775532 11
Q ss_pred cCCCCCCCCCcEEEeCCCC
Q 023897 86 SLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~s~ 104 (275)
. .. +++|++++|++..
T Consensus 223 ~-~~--vk~gavVIDvGin 238 (287)
T PRK14176 223 A-DM--VKEGAVIFDVGIT 238 (287)
T ss_pred H-HH--cCCCcEEEEeccc
Confidence 1 23 7889999999864
No 277
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.99 E-value=0.0029 Score=55.52 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=58.1
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh---h--hHHHHc----C--ceEecCh------HHHhccCCCE
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH---S--QLCHRS----G--ISFFSDK------RAFLEADNDV 70 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~---~--~~a~~~----g--~~~~~~~------~~~~~~~aD~ 70 (275)
...+++.|+|+|..+++++..|...|. +|++++|+++ . ..+... + +.. .++ .+. ..++|+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~-~~~aDi 199 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEA-LASADI 199 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhh-cccCCE
Confidence 455689999999999999999999886 8999999842 1 222222 1 122 222 222 257899
Q ss_pred EEEecCchhHHHHhhcC--CCCCCCCCcEEEeCC
Q 023897 71 ILISTSILSLSEVLNSL--PVHCLQRRTLIADVL 102 (275)
Q Consensus 71 iilavp~~~~~~v~~~l--~~~~l~~~~iv~d~~ 102 (275)
||-|+|.......-..+ +...++++.++.|+.
T Consensus 200 vINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v 233 (288)
T PRK12749 200 LTNGTKVGMKPLENESLVNDISLLHPGLLVTECV 233 (288)
T ss_pred EEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEec
Confidence 99999975422110111 101156678888875
No 278
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=96.98 E-value=0.0015 Score=58.69 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=57.2
Q ss_pred eEEEEc-CChHHHHHHHHHHHCCCe---EEEEcCChh--hhHHHHcCc--eEe-cChHHHhccCCCEEEEecCchhHHHH
Q 023897 13 KIGIIG-FGPFGQFLAKTMIKQGHI---LRATSRTDH--SQLCHRSGI--SFF-SDKRAFLEADNDVILISTSILSLSEV 83 (275)
Q Consensus 13 ~I~IIG-~G~mG~sla~~L~~~g~~---V~~~dr~~~--~~~a~~~g~--~~~-~~~~~~~~~~aD~iilavp~~~~~~v 83 (275)
||+||| .|..|..+.+.|.+.+|. +..+.++.. .... ..|. ... .+.++ ..++|++|+|+|.....++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-~~~~~~~~~~~~~~~--~~~~D~v~~a~g~~~s~~~ 77 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-FKGKELEVNEAKIES--FEGIDIALFSAGGSVSKEF 77 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-eCCeeEEEEeCChHH--hcCCCEEEECCCHHHHHHH
Confidence 689999 699999999999998774 334434332 1111 1122 111 12333 3789999999999988888
Q ss_pred hhcCCCCCCCCCcEEEeCCC
Q 023897 84 LNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 84 ~~~l~~~~l~~~~iv~d~~s 103 (275)
...+ +..|..++|.++
T Consensus 78 a~~~----~~~G~~VID~ss 93 (339)
T TIGR01296 78 APKA----AKCGAIVIDNTS 93 (339)
T ss_pred HHHH----HHCCCEEEECCH
Confidence 7776 455778999875
No 279
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.97 E-value=0.0047 Score=51.40 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hh-HHHHcCceEec---ChHHHhccCCCEEEEecCchhHH-
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQ-LCHRSGISFFS---DKRAFLEADNDVILISTSILSLS- 81 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~-~a~~~g~~~~~---~~~~~~~~~aD~iilavp~~~~~- 81 (275)
....+|.|||.|.+|..-++.|.+.|.+|++++++.. .. .+.+.++.... .... +.++|+||.|+......
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~d--l~~~~lVi~at~d~~ln~ 84 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADI--LEGAFLVIAATDDEELNR 84 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHH--hCCcEEEEECCCCHHHHH
Confidence 4567999999999999999999999999999988753 22 23322343211 2233 37999999999887443
Q ss_pred HHhhc
Q 023897 82 EVLNS 86 (275)
Q Consensus 82 ~v~~~ 86 (275)
.+...
T Consensus 85 ~i~~~ 89 (205)
T TIGR01470 85 RVAHA 89 (205)
T ss_pred HHHHH
Confidence 34333
No 280
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.97 E-value=0.0025 Score=55.76 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=48.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHcC----ceEec---ChHHHhccCCCEEEEecCch
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRSG----ISFFS---DKRAFLEADNDVILISTSIL 78 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~g----~~~~~---~~~~~~~~~aD~iilavp~~ 78 (275)
...++.|||+|.+|++++.+|.+.|. +|++++|+.+. ..+...+ +.... +..+. ..++|+||-|||..
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~-~~~~DiVInaTp~g 201 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAI-EKAAEVLVSTVPAD 201 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhc-ccCCCEEEECCCCC
Confidence 45689999999999999999999996 79999999753 2333222 11111 22232 36789999999975
No 281
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.97 E-value=0.0055 Score=54.52 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=54.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEe-c----ChHHHhccCCCEEEEecCchhHHHHh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFF-S----DKRAFLEADNDVILISTSILSLSEVL 84 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~-~----~~~~~~~~~aD~iilavp~~~~~~v~ 84 (275)
..+|+|+|+|-+|..-.+..+..|.+|+++||+++ .+.+++.|...+ + +..+.+.+.+|+|+.+++...+...+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~~~~~~~l 246 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGPATLEPSL 246 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCChhhHHHHH
Confidence 46899999998888777777778999999999995 578888887321 1 11121222389999999944445555
Q ss_pred hcC
Q 023897 85 NSL 87 (275)
Q Consensus 85 ~~l 87 (275)
+.+
T Consensus 247 ~~l 249 (339)
T COG1064 247 KAL 249 (339)
T ss_pred HHH
Confidence 544
No 282
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.97 E-value=0.0023 Score=51.42 Aligned_cols=91 Identities=15% Similarity=0.137 Sum_probs=57.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCc---eEe-----------------------cChHH
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGI---SFF-----------------------SDKRA 62 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~---~~~-----------------------~~~~~ 62 (275)
...+|.|+|+|+.|..-+..+...|++|+.+|.++.. ......+. ... ..+.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 98 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE 98 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence 4579999999999999999999999999999998853 33333332 110 11233
Q ss_pred HhccCCCEEEEec--CchhHHHHhhcC--CCCCCCCCcEEEeCCC
Q 023897 63 FLEADNDVILIST--SILSLSEVLNSL--PVHCLQRRTLIADVLS 103 (275)
Q Consensus 63 ~~~~~aD~iilav--p~~~~~~v~~~l--~~~~l~~~~iv~d~~s 103 (275)
. +..+|+||.+. |......++.+- .. ++++.+|+|++.
T Consensus 99 ~-i~~~d~vI~~~~~~~~~~P~lvt~~~~~~--m~~gsvIvDis~ 140 (168)
T PF01262_consen 99 F-IAPADIVIGNGLYWGKRAPRLVTEEMVKS--MKPGSVIVDISC 140 (168)
T ss_dssp H-HHH-SEEEEHHHBTTSS---SBEHHHHHT--SSTTEEEEETTG
T ss_pred H-HhhCcEEeeecccCCCCCCEEEEhHHhhc--cCCCceEEEEEe
Confidence 3 36789999764 333333333221 33 678999999863
No 283
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.96 E-value=0.003 Score=52.99 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=49.4
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHCCCe-EEEEcCCh----------hh-hHHHHc-CceEe-----cChHHHhccCC
Q 023897 7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHI-LRATSRTD----------HS-QLCHRS-GISFF-----SDKRAFLEADN 68 (275)
Q Consensus 7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~-V~~~dr~~----------~~-~~a~~~-g~~~~-----~~~~~~~~~~a 68 (275)
.++..++|+|.|+|++|+.+|+.|.+.|.. |.+.|.+. +. +...+. ++... .+.++....++
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 356778999999999999999999999874 55678776 32 222222 22111 12233223478
Q ss_pred CEEEEecCchhH
Q 023897 69 DVILISTSILSL 80 (275)
Q Consensus 69 D~iilavp~~~~ 80 (275)
|+++-|.+.+.+
T Consensus 99 DVlipaA~~~~i 110 (217)
T cd05211 99 DIFAPCALGNVI 110 (217)
T ss_pred cEEeeccccCcc
Confidence 999999887754
No 284
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.94 E-value=0.0038 Score=54.97 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=55.2
Q ss_pred CeEEEEc-CChHHHHHHHHHHHCCC-eEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhcCCC
Q 023897 12 LKIGIIG-FGPFGQFLAKTMIKQGH-ILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNSLPV 89 (275)
Q Consensus 12 ~~I~IIG-~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~l~~ 89 (275)
.||+|+| .|..|.-|.+.|....+ ++....-+... . ..+.++. .+++|++|+|+|.....++...+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~--------~-~~~~~~~-~~~~D~vFlalp~~~s~~~~~~~-- 69 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK--------D-AAERAKL-LNAADVAILCLPDDAAREAVSLV-- 69 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc--------C-cCCHhHh-hcCCCEEEECCCHHHHHHHHHHH--
Confidence 5899999 69999999999998743 44433211111 0 1133443 47899999999999888877776
Q ss_pred CCCCCCcEEEeCCC
Q 023897 90 HCLQRRTLIADVLS 103 (275)
Q Consensus 90 ~~l~~~~iv~d~~s 103 (275)
...|+.|+|.++
T Consensus 70 --~~~g~~VIDlSa 81 (310)
T TIGR01851 70 --DNPNTCIIDAST 81 (310)
T ss_pred --HhCCCEEEECCh
Confidence 346789999875
No 285
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.94 E-value=0.0023 Score=62.04 Aligned_cols=70 Identities=16% Similarity=0.311 Sum_probs=54.0
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceE-e---cCh---HHHhccCCCEEEEecCchhH
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISF-F---SDK---RAFLEADNDVILISTSILSL 80 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~-~---~~~---~~~~~~~aD~iilavp~~~~ 80 (275)
..+|-|+|+|++|..+++.|.+.|+++++.|.|++ .+.+.+.|..+ . ++. +++-++++|.++++++.+..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~ 477 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT 477 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHH
Confidence 46899999999999999999999999999999996 56666667632 1 222 22113689999999998653
No 286
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.93 E-value=0.0024 Score=57.12 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=59.6
Q ss_pred CCCCCeEEEEcC-ChHHHHHHHHHHHC-C-CeEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897 8 SSSTLKIGIIGF-GPFGQFLAKTMIKQ-G-HILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE 82 (275)
Q Consensus 8 ~~~~~~I~IIG~-G~mG~sla~~L~~~-g-~~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~ 82 (275)
....++|.|+|+ |.||+.+++.|.+. | .++++++|+... ..+.+.+.....+++++ +.++|+|+.++......
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~-l~~aDiVv~~ts~~~~~- 229 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEA-LPEADIVVWVASMPKGV- 229 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHH-HccCCEEEECCcCCcCC-
Confidence 346689999997 99999999999854 5 589999998742 23333321112345665 47899999887653210
Q ss_pred HhhcCCCCCCCCCcEEEeCC
Q 023897 83 VLNSLPVHCLQRRTLIADVL 102 (275)
Q Consensus 83 v~~~l~~~~l~~~~iv~d~~ 102 (275)
++.. .. ++++.+++|++
T Consensus 230 ~I~~-~~--l~~~~~viDiA 246 (340)
T PRK14982 230 EIDP-ET--LKKPCLMIDGG 246 (340)
T ss_pred cCCH-HH--hCCCeEEEEec
Confidence 0111 12 56778999986
No 287
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.92 E-value=0.0032 Score=58.61 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=51.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc--CceE-e---cChH---HHhccCCCEEEEecCch
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS--GISF-F---SDKR---AFLEADNDVILISTSIL 78 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~--g~~~-~---~~~~---~~~~~~aD~iilavp~~ 78 (275)
..+++|.|+|+|.+|..+++.|.+.|++|+++|++++ .....+. +... . ++.+ ++-++++|.++++++.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 3468899999999999999999999999999999985 3333332 4322 1 1222 22246899999998876
Q ss_pred h
Q 023897 79 S 79 (275)
Q Consensus 79 ~ 79 (275)
.
T Consensus 309 ~ 309 (453)
T PRK09496 309 E 309 (453)
T ss_pred H
Confidence 4
No 288
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.92 E-value=0.0037 Score=58.80 Aligned_cols=70 Identities=17% Similarity=0.262 Sum_probs=50.2
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-h-----hHHHHcCceEecCh-HHHhccCCCEEEEecCc
Q 023897 7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-S-----QLCHRSGISFFSDK-RAFLEADNDVILISTSI 77 (275)
Q Consensus 7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~-----~~a~~~g~~~~~~~-~~~~~~~aD~iilavp~ 77 (275)
.....++|.|||.|..|.++|..|++.|++|+++|+++. . ....+.|+.+.... .+. ...+|+||++...
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~-~~~~D~Vv~s~Gi 88 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTL-PEDTDLVVTSPGW 88 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccc-cCCCCEEEECCCc
Confidence 344567899999999999999999999999999996652 1 22345687654221 111 2579999998643
No 289
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0046 Score=54.69 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=58.9
Q ss_pred CCeEEEEc-CChHHHHHHHHHHHCCC--e-EEEE--cCChhhh--HHHHcCceE---ecChHHHhccCCCEEEEecCchh
Q 023897 11 TLKIGIIG-FGPFGQFLAKTMIKQGH--I-LRAT--SRTDHSQ--LCHRSGISF---FSDKRAFLEADNDVILISTSILS 79 (275)
Q Consensus 11 ~~~I~IIG-~G~mG~sla~~L~~~g~--~-V~~~--dr~~~~~--~a~~~g~~~---~~~~~~~~~~~aD~iilavp~~~ 79 (275)
++||+|+| .|.+|+-|.+.|.+..+ + +.++ .|+.-.+ ......+.. +.+..+ .++.|++|.|.+.+.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~--~~~~Divf~~ag~~~ 78 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFV--FSDVDIVFFAAGGSV 78 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccc--cccCCEEEEeCchHH
Confidence 47999999 69999999999999654 2 3333 3443221 111111111 123333 368999999999988
Q ss_pred HHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897 80 LSEVLNSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 80 ~~~v~~~l~~~~l~~~~iv~d~~s~ 104 (275)
..++..++ .+.|.+++|.+|.
T Consensus 79 s~~~~p~~----~~~G~~VIdnsSa 99 (334)
T COG0136 79 SKEVEPKA----AEAGCVVIDNSSA 99 (334)
T ss_pred HHHHHHHH----HHcCCEEEeCCcc
Confidence 88887776 4568999998874
No 290
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.90 E-value=0.0039 Score=57.79 Aligned_cols=77 Identities=18% Similarity=0.359 Sum_probs=49.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHC--------C--CeEE-EEcCChhhhH-HHHcCceEecChHHHhc-cCCCEEEEecC
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQ--------G--HILR-ATSRTDHSQL-CHRSGISFFSDKRAFLE-ADNDVILISTS 76 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~--------g--~~V~-~~dr~~~~~~-a~~~g~~~~~~~~~~~~-~~aD~iilavp 76 (275)
+++||+|+|+|.||+.+++.|.++ | .+|. +++++..... ....+...+++.++.+. .+.|+|+.|++
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG 81 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence 457999999999999999888653 2 3444 5688764321 11123456778888531 24699999987
Q ss_pred ch-hHHHHhhc
Q 023897 77 IL-SLSEVLNS 86 (275)
Q Consensus 77 ~~-~~~~v~~~ 86 (275)
.. ...+.+.+
T Consensus 82 ~~~~~~~~~~~ 92 (426)
T PRK06349 82 GIEPARELILK 92 (426)
T ss_pred CchHHHHHHHH
Confidence 53 23344433
No 291
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.89 E-value=0.0035 Score=59.30 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=47.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh---hHHHHc--CceEec--ChHHHhccCCCEEEEe--cCc
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS---QLCHRS--GISFFS--DKRAFLEADNDVILIS--TSI 77 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~---~~a~~~--g~~~~~--~~~~~~~~~aD~iila--vp~ 77 (275)
..++|.|+|.|..|.++|+.|.+.|++|+++|.+... ....+. |+.+.. ...+. +.++|+||++ +|+
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~-~~~~d~vv~sp~I~~ 81 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPAL-LDGVDLVALSPGLSP 81 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhH-hcCCCEEEECCCCCC
Confidence 3568999999999999999999999999999976521 222233 444322 12332 3689999997 454
No 292
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.88 E-value=0.0035 Score=56.56 Aligned_cols=87 Identities=18% Similarity=0.096 Sum_probs=57.3
Q ss_pred CCeEEEEc-CChHHHHHHH-HHHHCCCe---EEEEcCChh-hhH--HHHcCceEe--cChHHHhccCCCEEEEecCchhH
Q 023897 11 TLKIGIIG-FGPFGQFLAK-TMIKQGHI---LRATSRTDH-SQL--CHRSGISFF--SDKRAFLEADNDVILISTSILSL 80 (275)
Q Consensus 11 ~~~I~IIG-~G~mG~sla~-~L~~~g~~---V~~~dr~~~-~~~--a~~~g~~~~--~~~~~~~~~~aD~iilavp~~~~ 80 (275)
|++|+||| .|.+|+-|.+ .|.+..+. +..++.+.. ... ......... .+.+. ..++|++|+|+|....
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~--~~~~Divf~a~~~~~s 78 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDA--LKKLDIIITCQGGDYT 78 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhH--hcCCCEEEECCCHHHH
Confidence 37999999 5999999998 66666665 666554432 111 111111222 23344 2789999999999887
Q ss_pred HHHhhcCCCCCCCCC--cEEEeCCC
Q 023897 81 SEVLNSLPVHCLQRR--TLIADVLS 103 (275)
Q Consensus 81 ~~v~~~l~~~~l~~~--~iv~d~~s 103 (275)
.++..++ ...| ++++|.+|
T Consensus 79 ~~~~~~~----~~aG~~~~VID~Ss 99 (369)
T PRK06598 79 NEVYPKL----RAAGWQGYWIDAAS 99 (369)
T ss_pred HHHHHHH----HhCCCCeEEEECCh
Confidence 7877776 3456 67999886
No 293
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.87 E-value=0.0043 Score=58.06 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=47.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-h-----hHHHHcCceEe--cChHHHhccCCCEEEEe
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-S-----QLCHRSGISFF--SDKRAFLEADNDVILIS 74 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~-----~~a~~~g~~~~--~~~~~~~~~~aD~iila 74 (275)
..+||+|+|+|..|.++|+.|.+.|++|+++|+++. . ....+.|+.+. ....+.+ .++|+||++
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~-~~~dlVV~S 84 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKL-DGFDVIFKT 84 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHh-ccCCEEEEC
Confidence 346899999999999999999999999999998752 1 22345577543 2222323 789999988
No 294
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.87 E-value=0.0029 Score=54.84 Aligned_cols=78 Identities=10% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCCCCCeEEEEcCC-hHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 7 SSSSTLKIGIIGFG-PFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 7 ~~~~~~~I~IIG~G-~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
......+|.|||-+ ..|..+|..|...|..|+.+.++. .++.+. .++||+||.|++-..+ +-.
T Consensus 148 i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t-------------~~L~~~-~~~ADIvI~Avgk~~l--v~~ 211 (279)
T PRK14178 148 ISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT-------------ENLKAE-LRQADILVSAAGKAGF--ITP 211 (279)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh-------------hHHHHH-HhhCCEEEECCCcccc--cCH
Confidence 34567899999976 999999999999999999887653 245554 4899999999984422 111
Q ss_pred cCCCCCCCCCcEEEeCCCC
Q 023897 86 SLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~s~ 104 (275)
+ . +++|++++|++..
T Consensus 212 ~--~--vk~GavVIDVgi~ 226 (279)
T PRK14178 212 D--M--VKPGATVIDVGIN 226 (279)
T ss_pred H--H--cCCCcEEEEeecc
Confidence 2 2 6889999999853
No 295
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.86 E-value=0.0036 Score=54.24 Aligned_cols=76 Identities=9% Similarity=0.230 Sum_probs=59.1
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....++|.||| ...+|..++..|.+.|..|+++.... .++.+. .++||+||.|++-..+ +..
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T-------------~~l~~~-~~~ADIvIsAvGkp~~---i~~ 217 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT-------------KNLKEV-CKKADILVVAIGRPKF---IDE 217 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHH-HhhCCEEEEcCCCcCc---cCH
Confidence 45678999999 68899999999999999999987431 345564 4899999999997653 111
Q ss_pred CCCCCCCCCcEEEeCCC
Q 023897 87 LPVHCLQRRTLIADVLS 103 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s 103 (275)
.. +++|.+++|++-
T Consensus 218 -~~--ik~gavVIDvGi 231 (278)
T PRK14172 218 -EY--VKEGAIVIDVGT 231 (278)
T ss_pred -HH--cCCCcEEEEeec
Confidence 23 789999999974
No 296
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.85 E-value=0.0035 Score=54.46 Aligned_cols=77 Identities=12% Similarity=0.274 Sum_probs=59.0
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....++|.||| ...+|..++..|.+.|..|+++.... .++.+. .++||+||.|++-..+ +..
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T-------------~~l~~~-~~~ADIvI~AvG~p~~---i~~ 215 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT-------------RNLKQL-TKEADILVVAVGVPHF---IGA 215 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC-------------CCHHHH-HhhCCEEEEccCCcCc---cCH
Confidence 45678999999 68899999999999999999885331 345554 4899999999997653 111
Q ss_pred CCCCCCCCCcEEEeCCCC
Q 023897 87 LPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s~ 104 (275)
.. +++|++++|++..
T Consensus 216 -~~--vk~GavVIDvGin 230 (282)
T PRK14169 216 -DA--VKPGAVVIDVGIS 230 (282)
T ss_pred -HH--cCCCcEEEEeecc
Confidence 23 7899999999853
No 297
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.85 E-value=0.0045 Score=55.64 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=57.2
Q ss_pred CeEEEEc-CChHHHHHHHHHHHCC-CeEEEE-cCChhh--hHHHHc------C----c---eEe-cChHHHhccCCCEEE
Q 023897 12 LKIGIIG-FGPFGQFLAKTMIKQG-HILRAT-SRTDHS--QLCHRS------G----I---SFF-SDKRAFLEADNDVIL 72 (275)
Q Consensus 12 ~~I~IIG-~G~mG~sla~~L~~~g-~~V~~~-dr~~~~--~~a~~~------g----~---~~~-~~~~~~~~~~aD~ii 72 (275)
+||+|+| .|.+|+.+++.|.+.. ++|... +++... ...... + . .+. .+.+. ..++|+||
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~DvVf 78 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVA--SKDVDIVF 78 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHH--hccCCEEE
Confidence 5899999 5999999999998875 577765 444321 111100 1 1 111 12222 37899999
Q ss_pred EecCchhHHHHhhcCCCCCCCCCcEEEeCCCC
Q 023897 73 ISTSILSLSEVLNSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 73 lavp~~~~~~v~~~l~~~~l~~~~iv~d~~s~ 104 (275)
+|+|.....++...+ ...|..++|.++.
T Consensus 79 ~a~p~~~s~~~~~~~----~~~G~~VIDlsg~ 106 (341)
T TIGR00978 79 SALPSEVAEEVEPKL----AEAGKPVFSNASN 106 (341)
T ss_pred EeCCHHHHHHHHHHH----HHCCCEEEECChh
Confidence 999999877777665 3457788887764
No 298
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.84 E-value=0.0034 Score=54.64 Aligned_cols=77 Identities=9% Similarity=0.223 Sum_probs=59.3
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....++|.||| ...+|..++..|.+.|..|+++.... .++.+. .++||+||.|++...+ +..
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t-------------~~l~~~-~~~ADIvI~AvG~p~~---i~~ 217 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT-------------KNLAEL-TKQADILIVAVGKPKL---ITA 217 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc-------------hhHHHH-HHhCCEEEEecCCCCc---CCH
Confidence 45678999999 68999999999999999999885431 345554 4899999999986652 111
Q ss_pred CCCCCCCCCcEEEeCCCC
Q 023897 87 LPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s~ 104 (275)
.. +++|++++|++..
T Consensus 218 -~~--ik~gavVIDvGi~ 232 (284)
T PRK14190 218 -DM--VKEGAVVIDVGVN 232 (284)
T ss_pred -HH--cCCCCEEEEeecc
Confidence 23 7899999999853
No 299
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.83 E-value=0.0043 Score=53.90 Aligned_cols=77 Identities=8% Similarity=0.074 Sum_probs=59.7
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....++|.||| ...+|..++..|.+.|..|+++.... .++.+. .++||+||.|++-..+.. .
T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T-------------~~l~~~-~~~ADIvIsAvGk~~~i~--~- 218 (284)
T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT-------------QNLPSI-VRQADIIVGAVGKPEFIK--A- 218 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHH-HhhCCEEEEeCCCcCccC--H-
Confidence 45678999999 68999999999999999999987432 345554 489999999999765311 1
Q ss_pred CCCCCCCCCcEEEeCCCC
Q 023897 87 LPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s~ 104 (275)
.. +++|++++|++..
T Consensus 219 -~~--ik~gavVIDvGin 233 (284)
T PRK14177 219 -DW--ISEGAVLLDAGYN 233 (284)
T ss_pred -HH--cCCCCEEEEecCc
Confidence 23 7899999999853
No 300
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.82 E-value=0.0035 Score=55.57 Aligned_cols=64 Identities=14% Similarity=0.252 Sum_probs=47.0
Q ss_pred CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEe-------cChHHHhccCCCEEEEecC
Q 023897 12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFF-------SDKRAFLEADNDVILISTS 76 (275)
Q Consensus 12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~-------~~~~~~~~~~aD~iilavp 76 (275)
|||.|.| +|.+|+.+++.|.++||+|++.+|++.. ......+++.. .++.++ +.++|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a-l~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPS-FKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHH-HCCCCEEEECCC
Confidence 6899999 6999999999999999999999998642 22223354321 123443 478999998765
No 301
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.82 E-value=0.0047 Score=53.67 Aligned_cols=77 Identities=12% Similarity=0.229 Sum_probs=59.3
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....++|.||| ...+|..++..|.+.|..|+++... +.++.+. .++||+||.|++-..+ +..
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~-------------T~~l~~~-~~~ADIvI~AvG~~~~---i~~ 216 (284)
T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR-------------TKDLPQV-AKEADILVVATGLAKF---VKK 216 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHH-HhhCCEEEEecCCcCc---cCH
Confidence 45678999999 6789999999999999999987543 1345664 4899999999997653 111
Q ss_pred CCCCCCCCCcEEEeCCCC
Q 023897 87 LPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s~ 104 (275)
.. +++|.+++|++..
T Consensus 217 -~~--vk~GavVIDvGin 231 (284)
T PRK14170 217 -DY--IKPGAIVIDVGMD 231 (284)
T ss_pred -HH--cCCCCEEEEccCc
Confidence 23 7899999999854
No 302
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.82 E-value=0.005 Score=57.84 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=48.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCceEecC--hHHHhccCCCEEEEe
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISFFSD--KRAFLEADNDVILIS 74 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~~~~~--~~~~~~~~aD~iila 74 (275)
.++||.|+|+|..|.++|+.|.+.|++|+++|++... +...+.|+.+... ..+. +.++|+||.+
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~-~~~~d~vV~S 81 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQ-LDSFSLVVTS 81 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhH-hcCCCEEEeC
Confidence 3468999999999999999999999999999987632 2234458765422 2232 3688999887
No 303
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.82 E-value=0.0036 Score=54.32 Aligned_cols=76 Identities=9% Similarity=0.250 Sum_probs=58.7
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....++|.||| ...+|..++..|.++|..|+++.... .++.+. .++||+||.|++-..+ +..
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T-------------~dl~~~-~k~ADIvIsAvGkp~~---i~~ 217 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT-------------TDLKSH-TTKADILIVAVGKPNF---ITA 217 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC-------------CCHHHH-hhhcCEEEEccCCcCc---CCH
Confidence 45678999999 68899999999999999999886432 345553 4899999999997653 111
Q ss_pred CCCCCCCCCcEEEeCCC
Q 023897 87 LPVHCLQRRTLIADVLS 103 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s 103 (275)
.. +++|.+++|++.
T Consensus 218 -~~--vk~gavVIDvGi 231 (282)
T PRK14180 218 -DM--VKEGAVVIDVGI 231 (282)
T ss_pred -HH--cCCCcEEEEecc
Confidence 23 788999999984
No 304
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.82 E-value=0.0061 Score=54.67 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
...+|.|||+|.+|+.+|..|+..|+ +++++|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45789999999999999999999997 899999874
No 305
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.81 E-value=0.0043 Score=58.05 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=47.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEe
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILIS 74 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iila 74 (275)
..+||.|||.|..|.+.|..|.+.|++|.++|+.+. .....+.|+.......+.+ .++|+||.+
T Consensus 8 ~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~-~~~d~vv~s 72 (460)
T PRK01390 8 AGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADW-SGFAALVLS 72 (460)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHH-cCCCEEEEC
Confidence 456899999999999999999999999999997753 2223455775432112222 689998875
No 306
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.77 E-value=0.0053 Score=53.72 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=59.5
Q ss_pred CCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 7 SSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 7 ~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
.....++|.||| ...+|..++..|.+.|..|+++... +.++++. .++||+||.|++-..+ +.
T Consensus 154 i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~-------------T~~l~~~-~~~ADIvIsAvGkp~~---i~ 216 (297)
T PRK14186 154 IDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR-------------TQDLASI-TREADILVAAAGRPNL---IG 216 (297)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHH-HhhCCEEEEccCCcCc---cC
Confidence 345678999999 6889999999999999999888543 1345564 4899999999996642 11
Q ss_pred cCCCCCCCCCcEEEeCCCC
Q 023897 86 SLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~s~ 104 (275)
. .. +++|++++|++..
T Consensus 217 ~-~~--ik~gavVIDvGin 232 (297)
T PRK14186 217 A-EM--VKPGAVVVDVGIH 232 (297)
T ss_pred H-HH--cCCCCEEEEeccc
Confidence 1 23 7899999999854
No 307
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.77 E-value=0.0043 Score=53.91 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=58.7
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....++|.||| ...+|..++..|.+.|..|+++.... .++.+. .++||+||.|++-..+ +..
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T-------------~nl~~~-~~~ADIvIsAvGkp~~---i~~ 216 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-------------KDLSLY-TRQADLIIVAAGCVNL---LRS 216 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHH-HhhCCEEEEcCCCcCc---cCH
Confidence 45678999999 68899999999999999999886542 345554 4899999999997643 111
Q ss_pred CCCCCCCCCcEEEeCCC
Q 023897 87 LPVHCLQRRTLIADVLS 103 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s 103 (275)
.. +++|.+++|++-
T Consensus 217 -~~--vk~GavVIDvGi 230 (282)
T PRK14166 217 -DM--VKEGVIVVDVGI 230 (282)
T ss_pred -HH--cCCCCEEEEecc
Confidence 23 789999999984
No 308
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.77 E-value=0.013 Score=47.67 Aligned_cols=75 Identities=21% Similarity=0.305 Sum_probs=45.3
Q ss_pred eEEEEcCChHHHHH--HHHHHHC----CCeEEEEcCChhh-h----H----HHHcCc----eEecChHHHhccCCCEEEE
Q 023897 13 KIGIIGFGPFGQFL--AKTMIKQ----GHILRATSRTDHS-Q----L----CHRSGI----SFFSDKRAFLEADNDVILI 73 (275)
Q Consensus 13 ~I~IIG~G~mG~sl--a~~L~~~----g~~V~~~dr~~~~-~----~----a~~~g~----~~~~~~~~~~~~~aD~iil 73 (275)
||+|||+|..-... ...+... +.+|.++|++++. + . ..+.|. ..++|.+++ +++||.||.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA-l~gADfVi~ 79 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREA-LEGADFVIN 79 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH-HTTESEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH-hCCCCEEEE
Confidence 79999999765542 2233332 2389999999852 2 1 123333 568899997 499999999
Q ss_pred ecCchhH--HHHhhcCC
Q 023897 74 STSILSL--SEVLNSLP 88 (275)
Q Consensus 74 avp~~~~--~~v~~~l~ 88 (275)
++-.... ...=+++|
T Consensus 80 ~irvGg~~~r~~De~Ip 96 (183)
T PF02056_consen 80 QIRVGGLEAREIDEEIP 96 (183)
T ss_dssp ---TTHHHHHHHHHHTG
T ss_pred EeeecchHHHHHHHHHH
Confidence 9887543 34445553
No 309
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.77 E-value=0.005 Score=53.59 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=59.3
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....++|.||| ...+|..++..|.+.|..|+++.... .++.+. .++||+||.|++-..+. ..
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T-------------~~l~~~-~~~ADIvIsAvGkp~~i---~~ 214 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT-------------QDLPAV-TRRADVLVVAVGRPHLI---TP 214 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC-------------CCHHHH-HhhCCEEEEecCCcCcc---CH
Confidence 45678999999 68899999999999999999876432 345554 48999999999866431 11
Q ss_pred CCCCCCCCCcEEEeCCCC
Q 023897 87 LPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s~ 104 (275)
.. +++|++++|++..
T Consensus 215 -~~--vk~GavVIDVGin 229 (287)
T PRK14173 215 -EM--VRPGAVVVDVGIN 229 (287)
T ss_pred -HH--cCCCCEEEEccCc
Confidence 23 7899999999853
No 310
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.77 E-value=0.0024 Score=55.51 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=58.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHcCceEecChHHHhccCCCEEEEecCchhHH--HHh-
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRSGISFFSDKRAFLEADNDVILISTSILSLS--EVL- 84 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~--~v~- 84 (275)
..++.|+|+|-.+++++.+|.+.|. +|++++|+++. ..+...+.....+.. ...+|+||-|+|..... +.-
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~---~~~~dlvINaTp~Gm~~~~~~~~ 198 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLG---GIEADILVNVTPIGMAGGPEADK 198 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcc---cccCCEEEECCccccCCCCcccc
Confidence 3489999999999999999999997 69999999853 333344432211111 14689999999965321 100
Q ss_pred hcCCCCCCCCCcEEEeCC
Q 023897 85 NSLPVHCLQRRTLIADVL 102 (275)
Q Consensus 85 ~~l~~~~l~~~~iv~d~~ 102 (275)
..++...++++.++.|+.
T Consensus 199 ~pi~~~~l~~~~~v~D~v 216 (272)
T PRK12550 199 LAFPEAEIDAASVVFDVV 216 (272)
T ss_pred CCCCHHHcCCCCEEEEee
Confidence 012111156778888875
No 311
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.76 E-value=0.0038 Score=46.21 Aligned_cols=79 Identities=11% Similarity=0.186 Sum_probs=54.5
Q ss_pred HHHHHHHHHHCCCeEEEEcCChhhhHHHH----cCceEecChHHHhccCCCEEEEecCchhHHHH-hhcC-CCCCCCCCc
Q 023897 23 GQFLAKTMIKQGHILRATSRTDHSQLCHR----SGISFFSDKRAFLEADNDVILISTSILSLSEV-LNSL-PVHCLQRRT 96 (275)
Q Consensus 23 G~sla~~L~~~g~~V~~~dr~~~~~~a~~----~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v-~~~l-~~~~l~~~~ 96 (275)
+..+++.|.+.|.+|.+||+.-....... .+++..++++++ .+++|+||++++-+...++ .+++ .. +.++.
T Consensus 19 ~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vvl~t~h~~f~~l~~~~~~~~--~~~~~ 95 (106)
T PF03720_consen 19 ALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEA-LKGADAVVLATDHDEFRELDWEEIAKL--MRKPP 95 (106)
T ss_dssp HHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHH-HTTESEEEESS--GGGGCCGHHHHHHH--SCSSE
T ss_pred HHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHH-hcCCCEEEEEecCHHHhccCHHHHHHh--cCCCC
Confidence 55688999999999999998764332222 577888888886 4899999999998876542 2233 33 55778
Q ss_pred EEEeCCCC
Q 023897 97 LIADVLSV 104 (275)
Q Consensus 97 iv~d~~s~ 104 (275)
+|+|+-++
T Consensus 96 ~iiD~~~~ 103 (106)
T PF03720_consen 96 VIIDGRNI 103 (106)
T ss_dssp EEEESSST
T ss_pred EEEECccc
Confidence 99998764
No 312
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.75 E-value=0.0052 Score=53.33 Aligned_cols=78 Identities=10% Similarity=0.209 Sum_probs=58.7
Q ss_pred CCCCCCeEEEEcCC-hHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 7 SSSSTLKIGIIGFG-PFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 7 ~~~~~~~I~IIG~G-~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
.....++|.|||-+ .+|..+|..|.++|..|+++... +.++.+. .++||+||.|+.-..+ +.
T Consensus 153 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~-------------T~~l~~~-~~~ADIvV~AvGkp~~---i~ 215 (281)
T PRK14183 153 IDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF-------------TKDLKAH-TKKADIVIVGVGKPNL---IT 215 (281)
T ss_pred CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CcCHHHH-HhhCCEEEEecCcccc---cC
Confidence 34567899999965 99999999999999999877532 1245554 4899999999986643 11
Q ss_pred cCCCCCCCCCcEEEeCCCC
Q 023897 86 SLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~s~ 104 (275)
. .. +++|.+++|++..
T Consensus 216 ~-~~--vk~gavvIDvGin 231 (281)
T PRK14183 216 E-DM--VKEGAIVIDIGIN 231 (281)
T ss_pred H-HH--cCCCcEEEEeecc
Confidence 1 23 7889999999853
No 313
>PRK07236 hypothetical protein; Provisional
Probab=96.74 E-value=0.0024 Score=58.23 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=34.8
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
++|+.++|.|||+|..|.++|..|++.|++|+++++.+
T Consensus 2 ~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 2 THMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 45667899999999999999999999999999999875
No 314
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.73 E-value=0.0057 Score=53.40 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=59.2
Q ss_pred CCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 7 SSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 7 ~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
.....++|.||| ...+|..++..|.+.|..|+++.... .++.+. .++||+||.|++-..+ +.
T Consensus 156 i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T-------------~~l~~~-~~~ADIvVsAvGkp~~---i~ 218 (294)
T PRK14187 156 RNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT-------------RDLADY-CSKADILVAAVGIPNF---VK 218 (294)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC-------------CCHHHH-HhhCCEEEEccCCcCc---cC
Confidence 345678999999 68899999999999999999886532 345554 4899999999997643 11
Q ss_pred cCCCCCCCCCcEEEeCCC
Q 023897 86 SLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~s 103 (275)
. .. +++|++++|++-
T Consensus 219 ~-~~--ik~gaiVIDVGi 233 (294)
T PRK14187 219 Y-SW--IKKGAIVIDVGI 233 (294)
T ss_pred H-HH--cCCCCEEEEecc
Confidence 1 23 788999999974
No 315
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=96.73 E-value=0.0072 Score=52.92 Aligned_cols=77 Identities=10% Similarity=0.159 Sum_probs=58.9
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....++|.||| ...+|..++..|.+.|..|+++... +.++++. .++||+||.|+.-.. .+..
T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~-------------T~nl~~~-~~~ADIvv~AvGk~~---~i~~ 226 (299)
T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR-------------TPDPESI-VREADIVIAAAGQAM---MIKG 226 (299)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHH-HhhCCEEEEcCCCcC---ccCH
Confidence 45678999999 6889999999999999999998643 2345664 489999999998642 1111
Q ss_pred CCCCCCCCCcEEEeCCCC
Q 023897 87 LPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s~ 104 (275)
.. +++|++++|++..
T Consensus 227 -~~--vk~gavVIDvGin 241 (299)
T PLN02516 227 -DW--IKPGAAVIDVGTN 241 (299)
T ss_pred -HH--cCCCCEEEEeecc
Confidence 23 7899999999853
No 316
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.72 E-value=0.0057 Score=51.70 Aligned_cols=79 Identities=15% Similarity=0.254 Sum_probs=50.7
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEE-EEcC----------Chh-hh-HHHHcC-------ceEecChHHHhccC
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILR-ATSR----------TDH-SQ-LCHRSG-------ISFFSDKRAFLEAD 67 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~-~~dr----------~~~-~~-~a~~~g-------~~~~~~~~~~~~~~ 67 (275)
++..++|+|.|+|.+|+.+++.|.+.|.+|+ +.|. +.. +. ...+.| .... +.++....+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~ 106 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELD 106 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeec
Confidence 4567899999999999999999999999988 5565 322 21 122223 1111 223322357
Q ss_pred CCEEEEecCchhH-HHHhhcC
Q 023897 68 NDVILISTSILSL-SEVLNSL 87 (275)
Q Consensus 68 aD~iilavp~~~~-~~v~~~l 87 (275)
+|+++-|.+.+.+ .+.+.++
T Consensus 107 ~Dvlip~a~~~~i~~~~~~~l 127 (227)
T cd01076 107 CDILIPAALENQITADNADRI 127 (227)
T ss_pred ccEEEecCccCccCHHHHhhc
Confidence 8888888877654 3444444
No 317
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=96.71 E-value=0.0019 Score=58.92 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=50.1
Q ss_pred CeEEEEcCChHHH-HHHHHHHHCCCeEEEEcCChhh-hHHHHcCc------------------eEe--cChHHH--hccC
Q 023897 12 LKIGIIGFGPFGQ-FLAKTMIKQGHILRATSRTDHS-QLCHRSGI------------------SFF--SDKRAF--LEAD 67 (275)
Q Consensus 12 ~~I~IIG~G~mG~-sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~------------------~~~--~~~~~~--~~~~ 67 (275)
|||.++|+|+||+ .++..|.+.|++|+++|+++.. ....+.|. ... .+.+++ .+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 7899999999998 4588888899999999987642 22222221 011 011221 1247
Q ss_pred CCEEEEecCchhHHHHhhcC
Q 023897 68 NDVILISTSILSLSEVLNSL 87 (275)
Q Consensus 68 aD~iilavp~~~~~~v~~~l 87 (275)
+|+|.++|++.....+...+
T Consensus 81 ~dlvt~~v~~~~~~s~~~~l 100 (381)
T PRK02318 81 ADLVTTAVGPNILPFIAPLI 100 (381)
T ss_pred CCEEEeCCCcccchhHHHHH
Confidence 89999999987655555544
No 318
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.70 E-value=0.008 Score=55.99 Aligned_cols=68 Identities=22% Similarity=0.270 Sum_probs=49.1
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--h----hHHHHcCceEe--cChHHHhccCCCEEEEecCc
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--S----QLCHRSGISFF--SDKRAFLEADNDVILISTSI 77 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~----~~a~~~g~~~~--~~~~~~~~~~aD~iilavp~ 77 (275)
+..++|.|+|.|.+|.++|..|++.|++|+++|++.. . ....+.|+.+. ...++. ...+|+||.++-.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~d~vv~~~g~ 78 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEF-LEGVDLVVVSPGV 78 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhH-hhcCCEEEECCCC
Confidence 4567999999999999999999999999999999752 2 11223465432 122232 3679999998654
No 319
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.69 E-value=0.0068 Score=50.32 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=31.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
...||.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 45789999999999999999999997 899999873
No 320
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.68 E-value=0.031 Score=51.76 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=46.2
Q ss_pred CeEEEEcCChH-HHHHHHHHHHC-----CCeEEEEcCChhh-h--------HHHHcC----ceEecChHHHhccCCCEEE
Q 023897 12 LKIGIIGFGPF-GQFLAKTMIKQ-----GHILRATSRTDHS-Q--------LCHRSG----ISFFSDKRAFLEADNDVIL 72 (275)
Q Consensus 12 ~~I~IIG~G~m-G~sla~~L~~~-----g~~V~~~dr~~~~-~--------~a~~~g----~~~~~~~~~~~~~~aD~ii 72 (275)
|||+|||+|.. ...+...|.+. +-+|+++|.+++. + ...+.| +..++|.+++ +++||.||
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~A-l~gADfVi 79 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDA-IIDADFVI 79 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHH-hCCCCEEE
Confidence 69999999873 33455555543 2489999999842 2 122334 3578899997 59999999
Q ss_pred EecCch
Q 023897 73 ISTSIL 78 (275)
Q Consensus 73 lavp~~ 78 (275)
.++-..
T Consensus 80 ~~irvG 85 (425)
T cd05197 80 NQFRVG 85 (425)
T ss_pred EeeecC
Confidence 998763
No 321
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.68 E-value=0.0083 Score=56.61 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=49.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEec--ChHHHhccCCCEEEEecC
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFS--DKRAFLEADNDVILISTS 76 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~--~~~~~~~~~aD~iilavp 76 (275)
...+|.|+|+|..|.+.++.|.+.|++|+++|+++. ...+.+.|+.... ...+. +.++|+||.+-.
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~-l~~~D~VV~SpG 79 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQ-IADYALVVTSPG 79 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhH-hhcCCEEEECCC
Confidence 456899999999999999999999999999997764 3344556775532 22232 368999998853
No 322
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.67 E-value=0.0071 Score=55.08 Aligned_cols=89 Identities=10% Similarity=0.202 Sum_probs=60.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHC--C-CeEEEEcCChhh--hHH----HHc-C---ceEecChHHHhccCCCEEEEecCc
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQ--G-HILRATSRTDHS--QLC----HRS-G---ISFFSDKRAFLEADNDVILISTSI 77 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~--g-~~V~~~dr~~~~--~~a----~~~-g---~~~~~~~~~~~~~~aD~iilavp~ 77 (275)
..+++|||+|..+.+-..++... . -+|.+|+|+++. +.+ ... | +....+.+++ +.+||+|+.||+.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~ea-v~~ADIVvtaT~s 233 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEV-VRGSDIVTYCNSG 233 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHH-HcCCCEEEEccCC
Confidence 46899999999999999998873 2 389999999852 222 122 2 4567888886 5899999999974
Q ss_pred hh----HHHHhhcCCCCCCCCCcEEEeCCC
Q 023897 78 LS----LSEVLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 78 ~~----~~~v~~~l~~~~l~~~~iv~d~~s 103 (275)
.. ...++.. .. +++|+.|.-+++
T Consensus 234 ~~~~~s~~Pv~~~-~~--lkpG~hv~~ig~ 260 (379)
T PRK06199 234 ETGDPSTYPYVKR-EW--VKPGAFLLMPAA 260 (379)
T ss_pred CCCCCCcCcEecH-HH--cCCCcEEecCCc
Confidence 32 1122211 12 677877765554
No 323
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.65 E-value=0.075 Score=46.75 Aligned_cols=180 Identities=11% Similarity=0.153 Sum_probs=105.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChh----hhHHHHcCc---------------------eEecChHHH
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDH----SQLCHRSGI---------------------SFFSDKRAF 63 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~----~~~a~~~g~---------------------~~~~~~~~~ 63 (275)
.+.++.++|+|...--+|.-+...| +.+-+++|... ...+...+- .+..+++++
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~ 82 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQA 82 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHh
Confidence 4568999999999999999999887 57777777542 222322211 123455664
Q ss_pred hccCCCEEEEecCchhHHHHhhcCCCCCCCC--CcEEEeCC-CCChhHHHHHHhhCCCCCceeecCCCCCCCCCcC----
Q 023897 64 LEADNDVILISTSILSLSEVLNSLPVHCLQR--RTLIADVL-SVKEYPRNVLLQVLPEEMDVLCTHPMFGPESGQN---- 136 (275)
Q Consensus 64 ~~~~aD~iilavp~~~~~~v~~~l~~~~l~~--~~iv~d~~-s~k~~~~~~l~~~l~~~~~~v~~hP~~g~~~~~~---- 136 (275)
..+-+.+|+|||.+...+++++++...++. ..++++-+ +. ...++.+...++.++.+++.-.-.|..+-..
T Consensus 83 -~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGs-n~lv~~~mnk~~~daeViS~SsY~~dTk~id~~~p 160 (431)
T COG4408 83 -VGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGS-NLLVQNLMNKAGRDAEVISLSSYYADTKYIDAEQP 160 (431)
T ss_pred -hchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccc-cHHHHHHHhhhCCCceEEEeehhcccceeecccCc
Confidence 467899999999999999999994322432 33444322 22 2233433333355666766443333321100
Q ss_pred ------CccccceeeeeeecCChHHHHHHHHHHHHcCCeEEEcChhHHHHHHHHhh--hhHHHHH
Q 023897 137 ------GWKDFAFVYEKVRIRDEATCSSFLRIFESEGCKMLEMSCEEHDKVAAKSQ--FLTHTIG 193 (275)
Q Consensus 137 ------~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~~~~~hD~~~a~~~--~lp~~~a 193 (275)
+.+. -++.+....+....+++..+++..|..+.++..-.|...-..+- |-|-++.
T Consensus 161 ~~alTkavKk--riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlfln 223 (431)
T COG4408 161 NRALTKAVKK--RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLN 223 (431)
T ss_pred chHHHHHHhH--heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhh
Confidence 0111 12222222245577889999999999998886555544333322 6665554
No 324
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.63 E-value=0.0051 Score=58.57 Aligned_cols=95 Identities=21% Similarity=0.239 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCceE--ecChHHHhccCCCEEEEecCchhHHHHh
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISF--FSDKRAFLEADNDVILISTSILSLSEVL 84 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~~--~~~~~~~~~~~aD~iilavp~~~~~~v~ 84 (275)
...+++.|+|+|.+|++++..|.+.|++|++++|+.+. ..+...+... ..+..+.....+|+|+-|+|.......-
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~ 456 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVD 456 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCC
Confidence 44568999999999999999999999999999998742 2333333211 1222221113568888888876422110
Q ss_pred h-cCCCCCCCCCcEEEeCCC
Q 023897 85 N-SLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 85 ~-~l~~~~l~~~~iv~d~~s 103 (275)
. .++...++++.++.|+.-
T Consensus 457 ~~pl~~~~l~~~~~v~D~vY 476 (529)
T PLN02520 457 ETPISKHALKHYSLVFDAVY 476 (529)
T ss_pred CCcccHhhCCCCCEEEEecc
Confidence 1 121111566778888753
No 325
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=96.61 E-value=0.0053 Score=56.93 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=45.2
Q ss_pred eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhH---HH--HcCceEec-ChHHHhccCCCEEEEec
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQL---CH--RSGISFFS-DKRAFLEADNDVILIST 75 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~---a~--~~g~~~~~-~~~~~~~~~aD~iilav 75 (275)
||.|||.|..|.++|+.|.+.|++|+++|..+. ... .. ..|+.+.. ...+. +.++|+||++-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~-~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLED-LNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHH-hccCCEEEECC
Confidence 589999999999999999999999999997653 221 12 24775432 11332 37899988874
No 326
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.61 E-value=0.007 Score=53.81 Aligned_cols=78 Identities=13% Similarity=0.196 Sum_probs=59.3
Q ss_pred CCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhh
Q 023897 7 SSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLN 85 (275)
Q Consensus 7 ~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~ 85 (275)
.....++|.||| ...+|..+|..|.+.|..|+++.... .++.+. .++||+||.|++-..+ +.
T Consensus 210 i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T-------------~nl~~~-~~~ADIvIsAvGkp~~---v~ 272 (345)
T PLN02897 210 VEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT-------------KDPEQI-TRKADIVIAAAGIPNL---VR 272 (345)
T ss_pred CCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC-------------CCHHHH-HhhCCEEEEccCCcCc---cC
Confidence 345678999999 68899999999999999998875431 345554 4899999999997653 11
Q ss_pred cCCCCCCCCCcEEEeCCCC
Q 023897 86 SLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~s~ 104 (275)
. .. +++|.+++|++..
T Consensus 273 ~-d~--vk~GavVIDVGin 288 (345)
T PLN02897 273 G-SW--LKPGAVVIDVGTT 288 (345)
T ss_pred H-HH--cCCCCEEEEcccc
Confidence 1 23 7899999999853
No 327
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.60 E-value=0.027 Score=48.08 Aligned_cols=101 Identities=20% Similarity=0.191 Sum_probs=68.5
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHCC-CeEE-EEcCChhh---hHH------HHcCceEecChHHHhccCCCEEEEecCch
Q 023897 11 TLKIGIIGF-GPFGQFLAKTMIKQG-HILR-ATSRTDHS---QLC------HRSGISFFSDKRAFLEADNDVILISTSIL 78 (275)
Q Consensus 11 ~~~I~IIG~-G~mG~sla~~L~~~g-~~V~-~~dr~~~~---~~a------~~~g~~~~~~~~~~~~~~aD~iilavp~~ 78 (275)
+|||+|.|+ |+||+.+.+.+.+.. +++. .++|.+.. ..+ ...|+.+.+++... ..++|++|=-+-|.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~-~~~~DV~IDFT~P~ 80 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLV-KADADVLIDFTTPE 80 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhc-ccCCCEEEECCCch
Confidence 689999996 999999999998875 5655 47777631 111 22355666665554 47899999888877
Q ss_pred hHHHHhhcC-CCCCCCCCcEEEeCCCCChhHHHHHHhhC
Q 023897 79 SLSEVLNSL-PVHCLQRRTLIADVLSVKEYPRNVLLQVL 116 (275)
Q Consensus 79 ~~~~v~~~l-~~~~l~~~~iv~d~~s~k~~~~~~l~~~l 116 (275)
...+.++.. .+ +-.+|+-+++....-.+.+++..
T Consensus 81 ~~~~~l~~~~~~----~~~lVIGTTGf~~e~~~~l~~~a 115 (266)
T COG0289 81 ATLENLEFALEH----GKPLVIGTTGFTEEQLEKLREAA 115 (266)
T ss_pred hhHHHHHHHHHc----CCCeEEECCCCCHHHHHHHHHHH
Confidence 777777665 22 22466666666666566666553
No 328
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.60 E-value=0.0067 Score=54.23 Aligned_cols=76 Identities=11% Similarity=0.153 Sum_probs=58.8
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....++|.||| ...+|..++..|.+.+..|+++.... .++.+. .++||+||.|++-..+ +..
T Consensus 228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T-------------~nl~~~-~r~ADIVIsAvGkp~~---i~~ 290 (364)
T PLN02616 228 EIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-------------KNPEEI-TREADIIISAVGQPNM---VRG 290 (364)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC-------------CCHHHH-HhhCCEEEEcCCCcCc---CCH
Confidence 45678999999 68899999999999999999885431 345564 4899999999987643 111
Q ss_pred CCCCCCCCCcEEEeCCC
Q 023897 87 LPVHCLQRRTLIADVLS 103 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s 103 (275)
.. +++|.+++|++-
T Consensus 291 -d~--vK~GAvVIDVGI 304 (364)
T PLN02616 291 -SW--IKPGAVVIDVGI 304 (364)
T ss_pred -HH--cCCCCEEEeccc
Confidence 23 789999999984
No 329
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.59 E-value=0.0077 Score=45.22 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=48.1
Q ss_pred cCChHHHHHHHHHHHC----CCeEE-EEcCCh--hh-hHHHHcCceEecChHHHhcc--CCCEEEEecCchhHHHHhhcC
Q 023897 18 GFGPFGQFLAKTMIKQ----GHILR-ATSRTD--HS-QLCHRSGISFFSDKRAFLEA--DNDVILISTSILSLSEVLNSL 87 (275)
Q Consensus 18 G~G~mG~sla~~L~~~----g~~V~-~~dr~~--~~-~~a~~~g~~~~~~~~~~~~~--~aD~iilavp~~~~~~v~~~l 87 (275)
|+|.||+.++..|.+. +++|. +++|+. .. ......+...+.+++++ +. ..|+||=|++.+.+.+.+...
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dvvVE~t~~~~~~~~~~~~ 79 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEEL-IDDPDIDVVVECTSSEAVAEYYEKA 79 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHH-HTHTT-SEEEE-SSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHH-hcCcCCCEEEECCCchHHHHHHHHH
Confidence 8999999999999887 45655 467872 11 22222344566788875 35 788888888877777666655
Q ss_pred CCCCCCCCcEEE
Q 023897 88 PVHCLQRRTLIA 99 (275)
Q Consensus 88 ~~~~l~~~~iv~ 99 (275)
+..|.-++
T Consensus 80 ----L~~G~~VV 87 (117)
T PF03447_consen 80 ----LERGKHVV 87 (117)
T ss_dssp ----HHTTCEEE
T ss_pred ----HHCCCeEE
Confidence 34454444
No 330
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.59 E-value=0.0095 Score=50.20 Aligned_cols=63 Identities=22% Similarity=0.245 Sum_probs=48.3
Q ss_pred EEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhh---hHHHHcCceEe-------cChHHHhccCCCEEEEecCc
Q 023897 14 IGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHS---QLCHRSGISFF-------SDKRAFLEADNDVILISTSI 77 (275)
Q Consensus 14 I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~---~~a~~~g~~~~-------~~~~~~~~~~aD~iilavp~ 77 (275)
|+|+| .|.+|+.++..|.+.+++|.+..|++.. ......|+++. .++.++ ++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~a-l~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAA-LKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHH-HTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHH-HcCCceEEeecCc
Confidence 78999 5999999999999999999999998742 33445676421 223443 4899999999993
No 331
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.57 E-value=0.0072 Score=52.55 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=58.5
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHH--CCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHh
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIK--QGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVL 84 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~--~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~ 84 (275)
....+++.||| .+.+|..++..|.+ .+..|+++... +.++.+. .++||+||.|++-..+ +
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~-------------T~~l~~~-~k~ADIvV~AvGkp~~---i 217 (284)
T PRK14193 155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG-------------TRDLAAH-TRRADIIVAAAGVAHL---V 217 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC-------------CCCHHHH-HHhCCEEEEecCCcCc---c
Confidence 44678999999 68999999999998 67889888643 2355664 4899999999987642 1
Q ss_pred hcCCCCCCCCCcEEEeCCCC
Q 023897 85 NSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 85 ~~l~~~~l~~~~iv~d~~s~ 104 (275)
.. .. +++|++++|++..
T Consensus 218 ~~-~~--ik~GavVIDvGin 234 (284)
T PRK14193 218 TA-DM--VKPGAAVLDVGVS 234 (284)
T ss_pred CH-HH--cCCCCEEEEcccc
Confidence 11 23 7899999999853
No 332
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.54 E-value=0.016 Score=48.52 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=31.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
...+|+|||+|.+|+.++..|...|. +++++|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 45689999999999999999999997 699999873
No 333
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.51 E-value=0.011 Score=51.60 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=57.8
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....+++.||| ...+|..++..|.+.|..|+++... +.++.+. .++||+||.|+.-..+ +..
T Consensus 156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~-------------T~~L~~~-~~~ADIvV~AvGkp~~---i~~ 218 (288)
T PRK14171 156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK-------------THNLSSI-TSKADIVVAAIGSPLK---LTA 218 (288)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHH-HhhCCEEEEccCCCCc---cCH
Confidence 45678999999 6889999999999999999987633 1345554 4899999999986531 111
Q ss_pred CCCCCCCCCcEEEeCCC
Q 023897 87 LPVHCLQRRTLIADVLS 103 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s 103 (275)
.. +++|.+++|++-
T Consensus 219 -~~--vk~GavVIDvGi 232 (288)
T PRK14171 219 -EY--FNPESIVIDVGI 232 (288)
T ss_pred -HH--cCCCCEEEEeec
Confidence 23 789999999873
No 334
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.49 E-value=0.0045 Score=51.29 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCC
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRT 43 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~ 43 (275)
...||+|+|+|.+|+.+|..|++.|+ +++++|++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999999999999999999998 79999988
No 335
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.49 E-value=0.0088 Score=52.06 Aligned_cols=77 Identities=13% Similarity=0.237 Sum_probs=57.9
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHC----CCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQ----GHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE 82 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~----g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~ 82 (275)
....++|.||| ...+|..++..|.+. +..|+++... +.++.+. .++||+||.|++-..+
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~-------------T~~l~~~-~~~ADIvV~AvG~p~~-- 213 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ-------------SENLTEI-LKTADIIIAAIGVPLF-- 213 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC-------------CCCHHHH-HhhCCEEEEccCCcCc--
Confidence 45678999999 688999999999988 6788887543 1355664 4899999999987642
Q ss_pred HhhcCCCCCCCCCcEEEeCCCC
Q 023897 83 VLNSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 83 v~~~l~~~~l~~~~iv~d~~s~ 104 (275)
+.. .. +++|++++|++..
T Consensus 214 -i~~-~~--ik~GavVIDvGin 231 (287)
T PRK14181 214 -IKE-EM--IAEKAVIVDVGTS 231 (287)
T ss_pred -cCH-HH--cCCCCEEEEeccc
Confidence 111 23 7899999999843
No 336
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.47 E-value=0.0098 Score=51.65 Aligned_cols=77 Identities=10% Similarity=0.159 Sum_probs=58.6
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....++|.||| ...+|..++..|.+.+..|+++.... .++.+. .++||+||.|++-..+ +..
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T-------------~nl~~~-~~~ADIvI~AvGk~~~---i~~ 216 (282)
T PRK14182 154 DPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT-------------ADLAGE-VGRADILVAAIGKAEL---VKG 216 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHH-HhhCCEEEEecCCcCc---cCH
Confidence 45678999999 68899999999999999999886431 345554 4899999999986432 111
Q ss_pred CCCCCCCCCcEEEeCCCC
Q 023897 87 LPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s~ 104 (275)
.. +++|++++|++..
T Consensus 217 -~~--ik~gaiVIDvGin 231 (282)
T PRK14182 217 -AW--VKEGAVVIDVGMN 231 (282)
T ss_pred -HH--cCCCCEEEEeece
Confidence 23 7899999999853
No 337
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.45 E-value=0.011 Score=59.23 Aligned_cols=64 Identities=19% Similarity=0.352 Sum_probs=47.7
Q ss_pred CCCeEEEEcCChHHHHH-HHHHHHCCCeEEEEcCChh--hhHHHHcCceEec-ChHHHhccCCCEEEEe
Q 023897 10 STLKIGIIGFGPFGQFL-AKTMIKQGHILRATSRTDH--SQLCHRSGISFFS-DKRAFLEADNDVILIS 74 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sl-a~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~-~~~~~~~~~aD~iila 74 (275)
++.+|.|||.|..|.+. |+.|.+.|++|+++|.++. .....+.|+.+.. ...+. +.++|+||++
T Consensus 3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~-~~~~d~vV~S 70 (809)
T PRK14573 3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEH-VPEDAVVVYS 70 (809)
T ss_pred CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHH-cCCCCEEEEC
Confidence 44579999999999997 9999999999999997652 2333456776532 22233 3689999887
No 338
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.42 E-value=0.013 Score=52.67 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
...||.|||+|.+|+.+|..|+..|. +|+++|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 45789999999999999999999998 899999874
No 339
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.41 E-value=0.04 Score=51.18 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=45.5
Q ss_pred CeEEEEcCChH-HHHHHHHHHHC-----CCeEEEEcCChhh-h----HH----HHcC----ceEecChHHHhccCCCEEE
Q 023897 12 LKIGIIGFGPF-GQFLAKTMIKQ-----GHILRATSRTDHS-Q----LC----HRSG----ISFFSDKRAFLEADNDVIL 72 (275)
Q Consensus 12 ~~I~IIG~G~m-G~sla~~L~~~-----g~~V~~~dr~~~~-~----~a----~~~g----~~~~~~~~~~~~~~aD~ii 72 (275)
|||+|||+|.. +..+...|... +-+|+++|.+++. + .+ .+.| +..++|.+++ +++||.||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eA-l~gADfVi 79 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEA-FTDADFVF 79 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHH-hCCCCEEE
Confidence 79999999874 22344455433 2489999999842 1 12 2233 3578899997 59999999
Q ss_pred EecCch
Q 023897 73 ISTSIL 78 (275)
Q Consensus 73 lavp~~ 78 (275)
.++-..
T Consensus 80 ~~irvG 85 (437)
T cd05298 80 AQIRVG 85 (437)
T ss_pred EEeeeC
Confidence 998764
No 340
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.011 Score=52.82 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=48.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhh---HHHHcCceEec---ChHHHhccCCCEEEE---ecCchhHH
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQ---LCHRSGISFFS---DKRAFLEADNDVILI---STSILSLS 81 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~---~a~~~g~~~~~---~~~~~~~~~aD~iil---avp~~~~~ 81 (275)
+++|||||.|..|..|+.+-...|++|++.|.+++.- .+...=....+ .+.++ ++.||+|=. -||.+.+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~el-a~~~DViT~EfE~V~~~aL~ 79 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALREL-AAKCDVITYEFENVPAEALE 79 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHH-HhhCCEEEEeeccCCHHHHH
Confidence 4689999999999999999999999999999887532 12111011122 23453 467887633 35555444
Q ss_pred HHhh
Q 023897 82 EVLN 85 (275)
Q Consensus 82 ~v~~ 85 (275)
.+..
T Consensus 80 ~l~~ 83 (375)
T COG0026 80 KLAA 83 (375)
T ss_pred HHHh
Confidence 4433
No 341
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.38 E-value=0.015 Score=56.74 Aligned_cols=69 Identities=20% Similarity=0.352 Sum_probs=50.6
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh----------------------hhHHHHcCceEec--------
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH----------------------SQLCHRSGISFFS-------- 58 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~----------------------~~~a~~~g~~~~~-------- 58 (275)
+..+||+|||.|..|.+.|..|++.|++|++|++.+. .+...+.|+.+..
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~ 387 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI 387 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence 3578999999999999999999999999999987752 1223445653211
Q ss_pred ChHHHhccCCCEEEEecCch
Q 023897 59 DKRAFLEADNDVILISTSIL 78 (275)
Q Consensus 59 ~~~~~~~~~aD~iilavp~~ 78 (275)
+.++. ...+|.||+++...
T Consensus 388 ~~~~l-~~~~DaV~latGa~ 406 (639)
T PRK12809 388 TFSDL-TSEYDAVFIGVGTY 406 (639)
T ss_pred CHHHH-HhcCCEEEEeCCCC
Confidence 23343 36789999998753
No 342
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=96.38 E-value=0.012 Score=54.94 Aligned_cols=61 Identities=21% Similarity=0.422 Sum_probs=45.4
Q ss_pred eEEEEcCChHHHH-HHHHHHHCCCeEEEEcCChh--hhHHHHcCceEecC-hHHHhccCCCEEEEe
Q 023897 13 KIGIIGFGPFGQF-LAKTMIKQGHILRATSRTDH--SQLCHRSGISFFSD-KRAFLEADNDVILIS 74 (275)
Q Consensus 13 ~I~IIG~G~mG~s-la~~L~~~g~~V~~~dr~~~--~~~a~~~g~~~~~~-~~~~~~~~aD~iila 74 (275)
+|-|||.|..|.+ +|+.|++.|++|+++|.+.. .....+.|+.+... ..+. +.++|+||++
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~-~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAEN-LDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHH-CCCCCEEEEC
Confidence 4889999999998 99999999999999997653 22234457765432 2232 3679999887
No 343
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.37 E-value=0.0098 Score=52.01 Aligned_cols=92 Identities=18% Similarity=0.227 Sum_probs=57.6
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhh--hHHHHc----Cc--eEecCh---HHHhccCCCEEEEecCc
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHS--QLCHRS----GI--SFFSDK---RAFLEADNDVILISTSI 77 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~--~~a~~~----g~--~~~~~~---~~~~~~~aD~iilavp~ 77 (275)
..+++.|+|+|-.|++++..|.+.|. +|++++|+.+. +.+... +. ....+. .+. ...+|+||-|+|.
T Consensus 126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~-~~~~divINaTp~ 204 (283)
T PRK14027 126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDV-IAAADGVVNATPM 204 (283)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHH-HhhcCEEEEcCCC
Confidence 45689999999999999999999986 79999999753 222221 21 111121 222 3678999999996
Q ss_pred hhHHHHhhcCCCCCCCCCcEEEeCC
Q 023897 78 LSLSEVLNSLPVHCLQRRTLIADVL 102 (275)
Q Consensus 78 ~~~~~v~~~l~~~~l~~~~iv~d~~ 102 (275)
.....--..++...+.++.++.|+.
T Consensus 205 Gm~~~~~~~~~~~~l~~~~~v~D~v 229 (283)
T PRK14027 205 GMPAHPGTAFDVSCLTKDHWVGDVV 229 (283)
T ss_pred CCCCCCCCCCCHHHcCCCcEEEEcc
Confidence 5311000001111155677888875
No 344
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.35 E-value=0.019 Score=53.50 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=46.8
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--h---hHHHHcCceEe--cChHHHhccC-CCEEEEec
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--S---QLCHRSGISFF--SDKRAFLEAD-NDVILIST 75 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~---~~a~~~g~~~~--~~~~~~~~~~-aD~iilav 75 (275)
..++|.|+|.|.+|.+.|+.|++.|++|+++|++.. . ....+.|+... ....+. ... .|+||.+.
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~~~~~d~vV~s~ 76 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLEL-LDEDFDLMVKNP 76 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHH-hcCcCCEEEECC
Confidence 457899999999999999999999999999998652 1 22334576543 223332 233 89888875
No 345
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.35 E-value=0.017 Score=56.50 Aligned_cols=67 Identities=22% Similarity=0.384 Sum_probs=49.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh----------------------hhHHHHcCceEec--------C
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH----------------------SQLCHRSGISFFS--------D 59 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~----------------------~~~a~~~g~~~~~--------~ 59 (275)
..++|+|||.|..|.+.|..|++.|++|+++++.+. .....+.|+.+.. +
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~ 405 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDIS 405 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCC
Confidence 567999999999999999999999999999997642 1123445664321 2
Q ss_pred hHHHhccCCCEEEEecCc
Q 023897 60 KRAFLEADNDVILISTSI 77 (275)
Q Consensus 60 ~~~~~~~~aD~iilavp~ 77 (275)
.++. ...+|.||+++..
T Consensus 406 ~~~~-~~~~DavilAtGa 422 (654)
T PRK12769 406 LESL-LEDYDAVFVGVGT 422 (654)
T ss_pred HHHH-HhcCCEEEEeCCC
Confidence 2332 3578999999864
No 346
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.34 E-value=0.015 Score=50.89 Aligned_cols=76 Identities=12% Similarity=0.218 Sum_probs=57.0
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHC----CCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQ----GHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE 82 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~----g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~ 82 (275)
....++|+||| ...+|..++..|.+. +..|+++... +.++.+. .++||+||.|+.-..+
T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~-------------T~~l~~~-~~~ADIvVsAvGkp~~-- 221 (297)
T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR-------------SKNLARH-CQRADILIVAAGVPNL-- 221 (297)
T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC-------------CcCHHHH-HhhCCEEEEecCCcCc--
Confidence 45678999999 689999999999987 5788887533 1345554 4899999999986543
Q ss_pred HhhcCCCCCCCCCcEEEeCCC
Q 023897 83 VLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 83 v~~~l~~~~l~~~~iv~d~~s 103 (275)
+.. .. +++|++++|++-
T Consensus 222 -i~~-~~--ik~gavVIDvGi 238 (297)
T PRK14168 222 -VKP-EW--IKPGATVIDVGV 238 (297)
T ss_pred -cCH-HH--cCCCCEEEecCC
Confidence 111 23 789999999974
No 347
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=96.31 E-value=0.015 Score=51.76 Aligned_cols=87 Identities=13% Similarity=0.165 Sum_probs=66.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhHH--HHhh
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSLS--EVLN 85 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~--~v~~ 85 (275)
...+++.|.|.|-.|...|..++..|.+|+++..+|-+ ..|.-.|..+.+ .+++ +..+|++|-|+....+. +-+.
T Consensus 207 iaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~-m~~A-a~~gDifiT~TGnkdVi~~eh~~ 284 (420)
T COG0499 207 LAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMT-MEEA-AKTGDIFVTATGNKDVIRKEHFE 284 (420)
T ss_pred ecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEE-hHHh-hhcCCEEEEccCCcCccCHHHHH
Confidence 45678999999999999999999999999999999953 456667887754 4554 47899999999875432 2222
Q ss_pred cCCCCCCCCCcEEEeCC
Q 023897 86 SLPVHCLQRRTLIADVL 102 (275)
Q Consensus 86 ~l~~~~l~~~~iv~d~~ 102 (275)
. ++.+.|+.+.+
T Consensus 285 ~-----MkDgaIl~N~G 296 (420)
T COG0499 285 K-----MKDGAILANAG 296 (420)
T ss_pred h-----ccCCeEEeccc
Confidence 2 67788888766
No 348
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.30 E-value=0.0059 Score=56.08 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=31.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
.+|.|||.|.+|.+.|..|++.|++|+++|+.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999975
No 349
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.29 E-value=0.021 Score=50.48 Aligned_cols=78 Identities=22% Similarity=0.328 Sum_probs=59.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHC---CCeEE-EEcCChh--hhHHHHcCc---eEecChHHHhccCC--CEEEEecCc
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQ---GHILR-ATSRTDH--SQLCHRSGI---SFFSDKRAFLEADN--DVILISTSI 77 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~---g~~V~-~~dr~~~--~~~a~~~g~---~~~~~~~~~~~~~a--D~iilavp~ 77 (275)
....|+||+|+|.|++-+++.|.-. +|.|+ +++|+.+ .+.|+..++ +.+.+.+++ +++. |+|.+++|.
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeL-akd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEEL-AKDPEVDVVYISTPN 82 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHH-hcCCCcCEEEeCCCC
Confidence 3456899999999999999998653 57766 5788764 356777776 577888886 4555 999999999
Q ss_pred hhHHHHhhcC
Q 023897 78 LSLSEVLNSL 87 (275)
Q Consensus 78 ~~~~~v~~~l 87 (275)
.+..+++--+
T Consensus 83 ~qH~evv~l~ 92 (351)
T KOG2741|consen 83 PQHYEVVMLA 92 (351)
T ss_pred ccHHHHHHHH
Confidence 8777776554
No 350
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.28 E-value=0.017 Score=53.96 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=59.1
Q ss_pred CCCeEEEEcC----ChHHHHHHHHHHHCCC--eEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHH
Q 023897 10 STLKIGIIGF----GPFGQFLAKTMIKQGH--ILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEV 83 (275)
Q Consensus 10 ~~~~I~IIG~----G~mG~sla~~L~~~g~--~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v 83 (275)
...+|+|||+ |.+|..+.+.|.+.|| +|+.+++... .-.|+..+.+++++ -...|++++++|++.+.++
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~----~i~G~~~~~sl~~l-p~~~Dlavi~vp~~~~~~~ 80 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG----EILGVKAYPSVLEI-PDPVDLAVIVVPAKYVPQV 80 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC----ccCCccccCCHHHC-CCCCCEEEEecCHHHHHHH
Confidence 3468999998 8999999999999998 5665555432 12477788888884 4677999999999999999
Q ss_pred hhcC
Q 023897 84 LNSL 87 (275)
Q Consensus 84 ~~~l 87 (275)
++++
T Consensus 81 l~e~ 84 (447)
T TIGR02717 81 VEEC 84 (447)
T ss_pred HHHH
Confidence 9988
No 351
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.28 E-value=0.016 Score=50.80 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=55.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCe-EEEEcCCh---hh--hHHHHc-----CceE--e--cC---hHHHhccCCCE
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHI-LRATSRTD---HS--QLCHRS-----GISF--F--SD---KRAFLEADNDV 70 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~-V~~~dr~~---~~--~~a~~~-----g~~~--~--~~---~~~~~~~~aD~ 70 (275)
.+.+++.|+|+|.+|.+++..|.+.|.+ |++++|+. +. +.+.+. ++.. . ++ .++. +..+|+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~-~~~~Di 202 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAE-IASSDI 202 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhh-hccCCE
Confidence 3456899999999999999999999985 99999985 21 122111 1111 1 11 1222 256799
Q ss_pred EEEecCchhHHHHhh-cC-CCCCCCCCcEEEeCC
Q 023897 71 ILISTSILSLSEVLN-SL-PVHCLQRRTLIADVL 102 (275)
Q Consensus 71 iilavp~~~~~~v~~-~l-~~~~l~~~~iv~d~~ 102 (275)
||-|||.......-. -+ +...+.++.++.|+.
T Consensus 203 lINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~v 236 (289)
T PRK12548 203 LVNATLVGMKPNDGETNIKDTSVFRKDLVVADTV 236 (289)
T ss_pred EEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEec
Confidence 999998753211000 01 001155667788865
No 352
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.25 E-value=0.01 Score=41.22 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=30.7
Q ss_pred eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
||.|||.|.+|.-+|..|++.|.+|+++.+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 689999999999999999999999999988763
No 353
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.25 E-value=0.011 Score=51.39 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=57.2
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHH----CCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIK----QGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE 82 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~----~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~ 82 (275)
....+++.||| ...+|..++..|.+ .+..|+.+..+. .++.+. .++||+||.|++...+
T Consensus 154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t-------------~~l~~~-~~~ADIVI~AvG~p~l-- 217 (286)
T PRK14184 154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT-------------PDLAEE-CREADFLFVAIGRPRF-- 217 (286)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc-------------hhHHHH-HHhCCEEEEecCCCCc--
Confidence 45678999999 68899999999998 677888876442 245554 4899999999976543
Q ss_pred HhhcCCCCCCCCCcEEEeCCC
Q 023897 83 VLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 83 v~~~l~~~~l~~~~iv~d~~s 103 (275)
+-. .. +++|.+++|++-
T Consensus 218 i~~--~~--vk~GavVIDVGi 234 (286)
T PRK14184 218 VTA--DM--VKPGAVVVDVGI 234 (286)
T ss_pred CCH--HH--cCCCCEEEEeee
Confidence 111 22 788999999874
No 354
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.25 E-value=0.013 Score=51.31 Aligned_cols=76 Identities=11% Similarity=0.220 Sum_probs=56.4
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHH----CCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIK----QGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE 82 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~----~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~ 82 (275)
....++|.||| ...+|..++..|.+ .+..|+.+..+. .++++. +++||+||.|++-..+
T Consensus 156 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t-------------~~l~~~-~~~ADIvI~Avg~~~l-- 219 (295)
T PRK14174 156 ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT-------------KDIPSY-TRQADILIAAIGKARF-- 219 (295)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc-------------hhHHHH-HHhCCEEEEecCccCc--
Confidence 45678999999 68899999999987 577888876542 244554 4899999999975532
Q ss_pred HhhcCCCCCCCCCcEEEeCCC
Q 023897 83 VLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 83 v~~~l~~~~l~~~~iv~d~~s 103 (275)
+-. .. +++|.+++|++.
T Consensus 220 i~~--~~--vk~GavVIDVgi 236 (295)
T PRK14174 220 ITA--DM--VKPGAVVIDVGI 236 (295)
T ss_pred cCH--HH--cCCCCEEEEeec
Confidence 112 23 788999999874
No 355
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.22 E-value=0.019 Score=53.52 Aligned_cols=65 Identities=23% Similarity=0.344 Sum_probs=47.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh---hHHHH--cCceEecC--hHHHhccCCCEEEEec
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS---QLCHR--SGISFFSD--KRAFLEADNDVILIST 75 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~---~~a~~--~g~~~~~~--~~~~~~~~aD~iilav 75 (275)
..++|.|+|.|..|.+.|+.|.+.|++|+++|.++.. ....+ .|+.+... .+. ...++|+||++.
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~-~~~~~d~vv~sp 75 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDA-LDNGFDILALSP 75 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHH-HHhCCCEEEECC
Confidence 4578999999999999999999999999999987632 22222 36654321 222 236899999984
No 356
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.22 E-value=0.018 Score=51.33 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=45.5
Q ss_pred EEEEcCChHHHHHHHHHHHC-CCeEEE-EcCChhh--hHHHHcC------------------ceEecChHHHhccCCCEE
Q 023897 14 IGIIGFGPFGQFLAKTMIKQ-GHILRA-TSRTDHS--QLCHRSG------------------ISFFSDKRAFLEADNDVI 71 (275)
Q Consensus 14 I~IIG~G~mG~sla~~L~~~-g~~V~~-~dr~~~~--~~a~~~g------------------~~~~~~~~~~~~~~aD~i 71 (275)
|||+|+|+||...++.+.+. +.+|++ .|.+++. ..+...| +.+..+++++ ..++|+|
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeL-l~~vDiV 79 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDL-LEKVDIV 79 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHH-hhcCCEE
Confidence 68999999999999998765 467665 5655542 2333333 2334467775 4789999
Q ss_pred EEecCchh
Q 023897 72 LISTSILS 79 (275)
Q Consensus 72 ilavp~~~ 79 (275)
+.|+|...
T Consensus 80 ve~Tp~~~ 87 (333)
T TIGR01546 80 VDATPGGI 87 (333)
T ss_pred EECCCCCC
Confidence 99999753
No 357
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.21 E-value=0.064 Score=49.58 Aligned_cols=65 Identities=20% Similarity=0.316 Sum_probs=44.6
Q ss_pred CeEEEEcCChHHH-HHHHHHHHC-----CCeEEEEcCC-hh-hh----HH----HHcC----ceEecChHHHhccCCCEE
Q 023897 12 LKIGIIGFGPFGQ-FLAKTMIKQ-----GHILRATSRT-DH-SQ----LC----HRSG----ISFFSDKRAFLEADNDVI 71 (275)
Q Consensus 12 ~~I~IIG~G~mG~-sla~~L~~~-----g~~V~~~dr~-~~-~~----~a----~~~g----~~~~~~~~~~~~~~aD~i 71 (275)
|||+|||+|..-+ .+...|... +-+|+++|.+ ++ +. .+ .+.| +..+++.+++ +++||+|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~a-l~gadfV 79 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREA-LEGADFV 79 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHH-hCCCCEE
Confidence 6999999988633 344555542 2489999999 64 21 11 2233 3567889997 5999999
Q ss_pred EEecCc
Q 023897 72 LISTSI 77 (275)
Q Consensus 72 ilavp~ 77 (275)
|.+.-.
T Consensus 80 i~~~~v 85 (419)
T cd05296 80 FTQIRV 85 (419)
T ss_pred EEEEee
Confidence 999765
No 358
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.20 E-value=0.036 Score=49.97 Aligned_cols=67 Identities=16% Similarity=0.290 Sum_probs=48.1
Q ss_pred eEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHH-cCceEecChHH--------Hhc--cCCCEEEEecCchh
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHR-SGISFFSDKRA--------FLE--ADNDVILISTSILS 79 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~-~g~~~~~~~~~--------~~~--~~aD~iilavp~~~ 79 (275)
++.|+|+|.||...+..++..|. +|++.|++++ ++.|++ .|.....+..+ .+. ..+|++|-|+....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 79999999999999888888885 7888999985 577777 45543222211 011 24899999999543
No 359
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.20 E-value=0.0073 Score=55.10 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=32.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
.++|.|||+|..|.++|..|++.|++|+++++++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 46899999999999999999999999999998753
No 360
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.19 E-value=0.027 Score=52.82 Aligned_cols=68 Identities=19% Similarity=0.349 Sum_probs=49.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh----------------------hhHHHHcCceEec--------C
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH----------------------SQLCHRSGISFFS--------D 59 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~----------------------~~~a~~~g~~~~~--------~ 59 (275)
...+|.|||.|..|.+.|..|++.|++|+++++.+. .+...+.|+.+.. .
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 219 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDIS 219 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccC
Confidence 557899999999999999999999999999987641 1234456764321 2
Q ss_pred hHHHhccCCCEEEEecCch
Q 023897 60 KRAFLEADNDVILISTSIL 78 (275)
Q Consensus 60 ~~~~~~~~aD~iilavp~~ 78 (275)
.++. ...+|.||+|+...
T Consensus 220 ~~~~-~~~~D~vilAtGa~ 237 (467)
T TIGR01318 220 LDDL-LEDYDAVFLGVGTY 237 (467)
T ss_pred HHHH-HhcCCEEEEEeCCC
Confidence 2332 24789999998764
No 361
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.05 Score=49.99 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=47.8
Q ss_pred CCCCeEEEEcCChHHHHHH--HHHHHC----CCeEEEEcCChhh-h----HH----HHcCc----eEecChHHHhccCCC
Q 023897 9 SSTLKIGIIGFGPFGQFLA--KTMIKQ----GHILRATSRTDHS-Q----LC----HRSGI----SFFSDKRAFLEADND 69 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla--~~L~~~----g~~V~~~dr~~~~-~----~a----~~~g~----~~~~~~~~~~~~~aD 69 (275)
++++||+|||+|..+...- -.+.+. +.++.++|.++.. + .+ .+.|. ..++|.+++ +++||
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eA-l~gAd 79 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREA-LEGAD 79 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHH-hcCCC
Confidence 3567999999998776532 122221 3489999999842 2 11 22343 567899997 59999
Q ss_pred EEEEecCchh
Q 023897 70 VILISTSILS 79 (275)
Q Consensus 70 ~iilavp~~~ 79 (275)
.|+.++-+..
T Consensus 80 fVi~~~rvG~ 89 (442)
T COG1486 80 FVITQIRVGG 89 (442)
T ss_pred EEEEEEeeCC
Confidence 9999988754
No 362
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.13 E-value=0.017 Score=50.49 Aligned_cols=77 Identities=13% Similarity=0.214 Sum_probs=57.2
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHC----CCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQ----GHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE 82 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~----g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~ 82 (275)
....++|.||| ...+|..++..|.+. +..|+++.... .++.+. .++||+||.|++-..+.
T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T-------------~nl~~~-~~~ADIvIsAvGkp~~i- 218 (293)
T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS-------------KNLKKE-CLEADIIIAALGQPEFV- 218 (293)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC-------------CCHHHH-HhhCCEEEEccCCcCcc-
Confidence 45678999999 688999999999987 46788774321 345554 48999999999976531
Q ss_pred HhhcCCCCCCCCCcEEEeCCCC
Q 023897 83 VLNSLPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 83 v~~~l~~~~l~~~~iv~d~~s~ 104 (275)
.. .. +++|++++|++..
T Consensus 219 --~~-~~--vk~gavVIDvGin 235 (293)
T PRK14185 219 --KA-DM--VKEGAVVIDVGTT 235 (293)
T ss_pred --CH-HH--cCCCCEEEEecCc
Confidence 11 22 7889999999853
No 363
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.12 E-value=0.009 Score=54.35 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
+...+|.|||+|..|.++|..|++.|++|.++++++
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 445679999999999999999999999999999874
No 364
>PRK06753 hypothetical protein; Provisional
Probab=96.11 E-value=0.0078 Score=54.44 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=31.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
|+|.|||+|.-|.++|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998763
No 365
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.09 E-value=0.026 Score=50.74 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=43.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHC----------CCeEE-EEcCChh--------h----hHHHHcCc-e------EecCh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQ----------GHILR-ATSRTDH--------S----QLCHRSGI-S------FFSDK 60 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~----------g~~V~-~~dr~~~--------~----~~a~~~g~-~------~~~~~ 60 (275)
.+||+|+|+|.||+.+++.|.+. +.+|+ ++|++.. . ..+.+.+. . .+.+.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 46899999999999999999765 34555 4565321 1 11222221 1 12366
Q ss_pred HHHhc-cCCCEEEEecCch
Q 023897 61 RAFLE-ADNDVILISTSIL 78 (275)
Q Consensus 61 ~~~~~-~~aD~iilavp~~ 78 (275)
++++. .+.|+|+.|+|+.
T Consensus 82 ~ell~~~~~DvVvd~T~s~ 100 (341)
T PRK06270 82 LEVIRSVDADVVVEATPTN 100 (341)
T ss_pred HHHhhccCCCEEEECCcCc
Confidence 66431 3679999999974
No 366
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.07 E-value=0.0096 Score=54.34 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
....+|.|||+|..|.++|..|+++|++|.++++.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 445689999999999999999999999999999864
No 367
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.07 E-value=0.01 Score=45.80 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
..||+|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999997 799999874
No 368
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=96.07 E-value=0.024 Score=48.96 Aligned_cols=77 Identities=10% Similarity=0.191 Sum_probs=58.4
Q ss_pred CCCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHHHhhc
Q 023897 8 SSSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSEVLNS 86 (275)
Q Consensus 8 ~~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~v~~~ 86 (275)
....+++.|||- ..+|..|+..|...++.|+++.... .++.+. .++||+++.|+.-..+.. .
T Consensus 153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T-------------~~l~~~-~k~ADIvv~AvG~p~~i~---~ 215 (283)
T COG0190 153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT-------------KDLASI-TKNADIVVVAVGKPHFIK---A 215 (283)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC-------------CCHHHH-hhhCCEEEEecCCccccc---c
Confidence 456789999995 5679999999999999999987542 244553 589999999998654321 1
Q ss_pred CCCCCCCCCcEEEeCCCC
Q 023897 87 LPVHCLQRRTLIADVLSV 104 (275)
Q Consensus 87 l~~~~l~~~~iv~d~~s~ 104 (275)
.. +++|.+++|++..
T Consensus 216 -d~--vk~gavVIDVGin 230 (283)
T COG0190 216 -DM--VKPGAVVIDVGIN 230 (283)
T ss_pred -cc--ccCCCEEEecCCc
Confidence 23 7899999999853
No 369
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.06 E-value=0.0089 Score=54.89 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=31.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
|+|.|||.|.+|.+.|..|++.|++|+++++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 589999999999999999999999999999975
No 370
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=96.05 E-value=0.013 Score=43.45 Aligned_cols=92 Identities=14% Similarity=0.057 Sum_probs=65.1
Q ss_pred cChhHHHHHHHHhhhhHHHHHH---HHhh----ccccc---CcccCcchHHHHHHhhcCCCCChhhHHHHH-HHCHHHHH
Q 023897 173 MSCEEHDKVAAKSQFLTHTIGR---VLSE----LEIQS---TSMNTKGFETLIRLKESSVNDSFDLFSGLY-IHNRFAKQ 241 (275)
Q Consensus 173 ~~~~~hD~~~a~~~~lp~~~a~---~l~~----~~~~~---~~l~~~~~~~~~rl~~~~~~~~p~~~~~i~-~~N~~~~~ 241 (275)
+++++.|.+++++++.|.+++. ++.+ .|++. ..++...|.+..++.... +.+|.-+.+-+ ..+..+.+
T Consensus 1 V~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~a~ll~~~-~~~~~~l~~~v~tPgG~T~~ 79 (107)
T PF14748_consen 1 VDEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIGAAKLLEES-GRSPAELRDEVTTPGGTTIA 79 (107)
T ss_dssp -SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHC-SS-HHHHHHHHS-TTSHHHH
T ss_pred CCHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHhhhccCCCCcHHH
Confidence 4678899999999999977543 4444 35543 468899999999999975 54665555544 45667789
Q ss_pred HHHHHHHHHHHHHHHHhcchhHHHhh
Q 023897 242 ELLDLEAAFEKVKHKLQQKMEEVQLE 267 (275)
Q Consensus 242 ~l~~~~~~l~~~~~~l~~~~~~~~~~ 267 (275)
.|+.|.+. .+++.+.+..++++.+
T Consensus 80 gl~~L~~~--~~~~~~~~a~~aa~~R 103 (107)
T PF14748_consen 80 GLEVLEKG--GLRAAIMEALEAAVER 103 (107)
T ss_dssp HHHHHHHT--THHHHHHHHHHHHHHH
T ss_pred HHHHHHHC--CHHHHHHHHHHHHHHH
Confidence 99999884 6788888777776543
No 371
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.05 E-value=0.024 Score=49.67 Aligned_cols=76 Identities=14% Similarity=0.255 Sum_probs=56.4
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHC----CCeEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEecCchhHHH
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQ----GHILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILISTSILSLSE 82 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~----g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~~ 82 (275)
....++|.||| ...+|..+|..|.+. +..|+++... +.++.+. .++||+||.|+.-..+
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~-------------T~~l~~~-~~~ADIvIsAvGkp~~-- 217 (297)
T PRK14167 154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR-------------TDDLAAK-TRRADIVVAAAGVPEL-- 217 (297)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC-------------CCCHHHH-HhhCCEEEEccCCcCc--
Confidence 45678999999 688999999999887 6788887432 1345554 4899999999886542
Q ss_pred HhhcCCCCCCCCCcEEEeCCC
Q 023897 83 VLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 83 v~~~l~~~~l~~~~iv~d~~s 103 (275)
+.. .. +++|.+++|++-
T Consensus 218 -i~~-~~--ik~gaiVIDvGi 234 (297)
T PRK14167 218 -IDG-SM--LSEGATVIDVGI 234 (297)
T ss_pred -cCH-HH--cCCCCEEEEccc
Confidence 111 23 788999999983
No 372
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.02 E-value=0.011 Score=45.93 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=29.6
Q ss_pred eEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
||.|||+|.+|+.+++.|...|+ +++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 68999999999999999999997 799999874
No 373
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.02 E-value=0.11 Score=43.74 Aligned_cols=76 Identities=24% Similarity=0.265 Sum_probs=54.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh--hhh-HHHHcCceEec---ChHHHhccCCCEEEEecCchhHHHH
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD--HSQ-LCHRSGISFFS---DKRAFLEADNDVILISTSILSLSEV 83 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~--~~~-~a~~~g~~~~~---~~~~~~~~~aD~iilavp~~~~~~v 83 (275)
+.++|.|||.|.+|..=+..|.+.|.+|+++.+.- +.. .+....++... ...+ +.++++||.||....+..-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~d--l~g~~LViaATdD~~vN~~ 101 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEF--IKDKHLIVIATDDEKLNNK 101 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHH--hCCCcEEEECCCCHHHHHH
Confidence 46789999999999999999999999999998764 332 23322332211 2334 3789999999998876655
Q ss_pred hhcC
Q 023897 84 LNSL 87 (275)
Q Consensus 84 ~~~l 87 (275)
+...
T Consensus 102 I~~~ 105 (223)
T PRK05562 102 IRKH 105 (223)
T ss_pred HHHH
Confidence 5554
No 374
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.00 E-value=0.024 Score=52.81 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=45.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh---hHHHH--cCceEec---ChHHHhccCCCEEEEe
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS---QLCHR--SGISFFS---DKRAFLEADNDVILIS 74 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~---~~a~~--~g~~~~~---~~~~~~~~~aD~iila 74 (275)
-.|+|+|.|..|.++|+.|.+.|++|+++|..+.. ....+ .|+.+.. +.+. +.++|+||++
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~--~~~~d~vV~s 75 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCEL--LVQASEIIIS 75 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHH--hcCCCEEEEC
Confidence 46999999999999999999999999999976531 22222 3775532 3333 3689998887
No 375
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=95.99 E-value=0.018 Score=51.98 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=54.8
Q ss_pred CeEEEEc-CChHHHHHHHHHH-HCCCe---EEEEcCChh--h-hHHHHcCceEec-ChHHHhccCCCEEEEecCchhHHH
Q 023897 12 LKIGIIG-FGPFGQFLAKTMI-KQGHI---LRATSRTDH--S-QLCHRSGISFFS-DKRAFLEADNDVILISTSILSLSE 82 (275)
Q Consensus 12 ~~I~IIG-~G~mG~sla~~L~-~~g~~---V~~~dr~~~--~-~~a~~~g~~~~~-~~~~~~~~~aD~iilavp~~~~~~ 82 (275)
++|+|+| +|.+|+.|.+.|. +..+. +..++.+.. . .........+.. +..+. ..+.|++|.|.+.+...+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~-~~~vDivffa~g~~~s~~ 79 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDA-LKALDIIITCQGGDYTNE 79 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCccccc-ccCCCEEEEcCCHHHHHH
Confidence 4899999 5999999999998 55553 444433221 1 111111111111 11112 378999999999987777
Q ss_pred HhhcCCCCCCCCC--cEEEeCCC
Q 023897 83 VLNSLPVHCLQRR--TLIADVLS 103 (275)
Q Consensus 83 v~~~l~~~~l~~~--~iv~d~~s 103 (275)
+...+ ...| ++++|.+|
T Consensus 80 ~~p~~----~~aG~~~~VIDnSS 98 (366)
T TIGR01745 80 IYPKL----RESGWQGYWIDAAS 98 (366)
T ss_pred HHHHH----HhCCCCeEEEECCh
Confidence 77765 3457 78999876
No 376
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.98 E-value=0.021 Score=52.55 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=44.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceEecChHHHh-ccCCCEEEEe--cCc
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISFFSDKRAFL-EADNDVILIS--TSI 77 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~~~~~~~~~-~~~aD~iila--vp~ 77 (275)
|+|.|+|+|.-|.++|+.|. .|++|+++|.++......+.|+... . .+.. ..++|+||.+ +|+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~ 66 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPP 66 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEe-c-HHHcCcCCCCEEEECCCCCC
Confidence 68999999999999999999 9999999996543221223476553 2 2211 1468988877 444
No 377
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.95 E-value=0.041 Score=53.85 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
..++|.|||+|..|.+.|..|++.|++|+++++++
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE 226 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 45799999999999999999999999999998764
No 378
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.92 E-value=0.021 Score=52.86 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=48.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-----hHHHHcCceEecC--hHHHhccCCCEEEEe--cCc
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-----QLCHRSGISFFSD--KRAFLEADNDVILIS--TSI 77 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-----~~a~~~g~~~~~~--~~~~~~~~aD~iila--vp~ 77 (275)
.++||+|+|+|.-|.+.++.|.+.|++|+++|.++.. ......++.+... ..+. ..++|+|+.+ +|+
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~-~~~~d~vV~SPGi~~ 81 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDED-LAEFDLVVKSPGIPP 81 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhc-cccCCEEEECCCCCC
Confidence 3789999999999999999999999999999977632 1222345543221 1122 3678999987 454
No 379
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=95.91 E-value=0.013 Score=55.97 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=36.9
Q ss_pred CCcCCCC-CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 1 MAVSSPS-SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 1 ~~~~~~~-~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
|+.|+++ ++...+|.|||+|..|.++|..|++.|++|+++++.+
T Consensus 12 ~~~~~~~~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 12 PHADQDADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CCccccCCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4556643 3456689999999999999999999999999999875
No 380
>PRK05868 hypothetical protein; Validated
Probab=95.91 E-value=0.011 Score=53.65 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=31.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
|++|.|||.|..|.++|..|++.|++|+++++.+
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 4689999999999999999999999999999875
No 381
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.89 E-value=0.015 Score=39.28 Aligned_cols=30 Identities=30% Similarity=0.319 Sum_probs=27.5
Q ss_pred EEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 16 IIGFGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 16 IIG~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
|||+|.-|.+.|..|++.|++|.++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999999874
No 382
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.88 E-value=0.012 Score=53.51 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
..+|.|||+|..|.++|..|++.|++|+++++.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 3589999999999999999999999999999753
No 383
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.86 E-value=0.15 Score=42.47 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=56.0
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh--hh-hHHHHcCceE---ecChHHHhccCCCEEEEecCchhHH
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD--HS-QLCHRSGISF---FSDKRAFLEADNDVILISTSILSLS 81 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~--~~-~~a~~~g~~~---~~~~~~~~~~~aD~iilavp~~~~~ 81 (275)
....++|.|||.|.+|..=++.|.+.|.+|+++..+. +. ....+.++.. .-+.++ + ..+++||.||+.....
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~-~~~~lviaAt~d~~ln 86 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-L-DDAFLVIAATDDEELN 86 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-h-cCceEEEEeCCCHHHH
Confidence 3467899999999999999999999999999998765 22 2333334321 123334 2 5699999999998765
Q ss_pred HHhhcC
Q 023897 82 EVLNSL 87 (275)
Q Consensus 82 ~v~~~l 87 (275)
+-+.+.
T Consensus 87 ~~i~~~ 92 (210)
T COG1648 87 ERIAKA 92 (210)
T ss_pred HHHHHH
Confidence 554444
No 384
>PRK06847 hypothetical protein; Provisional
Probab=95.86 E-value=0.013 Score=52.94 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
++++|.|||+|.-|.++|..|++.|++|+++++++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 45689999999999999999999999999999875
No 385
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.83 E-value=0.013 Score=51.92 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=29.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
.+|.|||+|.-|.++|..|+++|++|.++++++
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 479999999999999999999999999999875
No 386
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.82 E-value=0.013 Score=53.71 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
....+|.|||+|.-|.++|..|++.|++|+++++.+
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 345689999999999999999999999999998765
No 387
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.82 E-value=0.021 Score=50.94 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=53.5
Q ss_pred eEEEEcCChHHHHHHHHHHHCC----CeEEEE-cCChh--hhHHHHcC-----------------------ceEe--cCh
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQG----HILRAT-SRTDH--SQLCHRSG-----------------------ISFF--SDK 60 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g----~~V~~~-dr~~~--~~~a~~~g-----------------------~~~~--~~~ 60 (275)
||+|+|+|++|+.+.+.|.+.+ ++|... |.... .....+.+ +.+. .++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p 80 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP 80 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence 6999999999999999988753 566654 33221 12222211 1111 133
Q ss_pred HHHh--ccCCCEEEEecCchhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897 61 RAFL--EADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 61 ~~~~--~~~aD~iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s 103 (275)
++.- ..+.|++|.|++.....+..... +..|...+++++
T Consensus 81 ~~~~w~~~gvDiVie~tG~~~s~e~a~~~----l~aGa~~V~~Sa 121 (325)
T TIGR01532 81 EALPWRALGVDLVLDCTGVYGNREQGERH----IRAGAKRVLFSH 121 (325)
T ss_pred hhccccccCCCEEEEccchhccHHHHHHH----HHcCCeEEEecC
Confidence 3311 13789999999987766655554 556777777664
No 388
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=95.82 E-value=0.1 Score=46.15 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=58.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHCCCeEE-EEcCChhhhHHHHcCceEecChHHHhccC--CCEEEEecCchhHHHHhh
Q 023897 10 STLKIGIIG-FGPFGQFLAKTMIKQGHILR-ATSRTDHSQLCHRSGISFFSDKRAFLEAD--NDVILISTSILSLSEVLN 85 (275)
Q Consensus 10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~~~--aD~iilavp~~~~~~v~~ 85 (275)
+..||.|-| +|.-|+..++...+.|-+|+ ++++..--..-...|+.++.+..++ .+. .|+.+++||+..+.+.+.
T Consensus 28 ~~t~v~vqGitg~~g~~h~~~~~~ygt~iv~GV~Pgkgg~~v~~~Gvpvy~sv~ea-~~~~~~D~avI~VPa~~v~dai~ 106 (317)
T PTZ00187 28 KNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTTHLKHGLPVFATVKEA-KKATGADASVIYVPPPHAASAII 106 (317)
T ss_pred CCCeEEEecCCChHHHHHHHHHHHhCCcEEEEECCCCCCceEecCCccccCCHHHH-hcccCCCEEEEecCHHHHHHHHH
Confidence 346899999 79999999999999998765 4555441111112378888999986 455 899999999999888888
Q ss_pred cC
Q 023897 86 SL 87 (275)
Q Consensus 86 ~l 87 (275)
+.
T Consensus 107 Ea 108 (317)
T PTZ00187 107 EA 108 (317)
T ss_pred HH
Confidence 77
No 389
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.81 E-value=0.043 Score=48.98 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=40.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHC------C--CeEE-EEcCChhh--------hHH---HHcC-ce--Eec--ChHHHhcc
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQ------G--HILR-ATSRTDHS--------QLC---HRSG-IS--FFS--DKRAFLEA 66 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~------g--~~V~-~~dr~~~~--------~~a---~~~g-~~--~~~--~~~~~~~~ 66 (275)
|||+|||+|++|+.+++.|.++ | .+|+ ++|++... ... .+.| +. ..+ +.++.+..
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 5899999999999999999873 3 4544 45655311 110 1112 11 112 45554335
Q ss_pred CCCEEEEecCc
Q 023897 67 DNDVILISTSI 77 (275)
Q Consensus 67 ~aD~iilavp~ 77 (275)
++|++|=|+|.
T Consensus 81 ~~DVvVE~t~~ 91 (326)
T PRK06392 81 KPDVIVDVTPA 91 (326)
T ss_pred CCCEEEECCCC
Confidence 78999999974
No 390
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.78 E-value=0.028 Score=52.56 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=45.2
Q ss_pred eEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hh----HHHHcCceEecC--hH-----HHhccCCCEEEEec
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQ----LCHRSGISFFSD--KR-----AFLEADNDVILIST 75 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~----~a~~~g~~~~~~--~~-----~~~~~~aD~iilav 75 (275)
||.|||.|..|.+.|+.|.+.|++|.++|+++. .. .....|+++... .+ .. ..+.|+|+++-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~-~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPW-LDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHH-hhcCCEEEECC
Confidence 799999999999999999999999999998763 21 123457755321 11 22 36789998853
No 391
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.75 E-value=0.016 Score=46.88 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=29.5
Q ss_pred eEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
||+|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999999999999998 699999875
No 392
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.74 E-value=0.05 Score=52.34 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=49.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh----------------------hhhHHHHcCceEec------C-
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD----------------------HSQLCHRSGISFFS------D- 59 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~----------------------~~~~a~~~g~~~~~------~- 59 (275)
....+|.|||+|..|.+.|..|++.|++|+++++.+ ....+.+.|+.... +
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~ 214 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI 214 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence 356789999999999999999999999999998642 12345566764221 1
Q ss_pred -hHHHhccCCCEEEEecCch
Q 023897 60 -KRAFLEADNDVILISTSIL 78 (275)
Q Consensus 60 -~~~~~~~~aD~iilavp~~ 78 (275)
.++. ...+|.||+|+...
T Consensus 215 ~~~~~-~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 215 TLEQL-EGEFDAVFVAIGAQ 233 (564)
T ss_pred CHHHH-HhhCCEEEEeeCCC
Confidence 2222 24689999998764
No 393
>PRK06185 hypothetical protein; Provisional
Probab=95.74 E-value=0.015 Score=53.27 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
.....|.|||.|..|.++|..|++.|++|+++++++
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 344689999999999999999999999999999864
No 394
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.73 E-value=0.015 Score=52.98 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHC---CCeEEEEcCC
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQ---GHILRATSRT 43 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~---g~~V~~~dr~ 43 (275)
|.+++|.|||+|..|.++|..|+++ |++|.++++.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 3557899999999999999999998 9999999984
No 395
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=95.71 E-value=0.046 Score=49.74 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=32.3
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
+++|+|||.|..|..++.+..+.|++|+++|.+++
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~ 36 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPD 36 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence 46899999999999999999999999999998864
No 396
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=95.70 E-value=0.08 Score=45.41 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=47.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC--eEEEEcCChhhh----HHHHcCc--------eEecChHHHhccCCCEEEEec
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH--ILRATSRTDHSQ----LCHRSGI--------SFFSDKRAFLEADNDVILIST 75 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~--~V~~~dr~~~~~----~a~~~g~--------~~~~~~~~~~~~~aD~iilav 75 (275)
...||.|+|.|.+|.+.|..+..+|. ++.+.|.++... ...+.|. ....|... ..+++++|+..
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~--sa~S~lvIiTA 96 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSV--SANSKLVIITA 96 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccc--cCCCcEEEEec
Confidence 35799999999999999999988885 899999887531 1223332 22223332 36899999987
Q ss_pred Cc
Q 023897 76 SI 77 (275)
Q Consensus 76 p~ 77 (275)
..
T Consensus 97 Ga 98 (332)
T KOG1495|consen 97 GA 98 (332)
T ss_pred CC
Confidence 65
No 397
>PRK08013 oxidoreductase; Provisional
Probab=95.67 E-value=0.016 Score=53.08 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
..+|.|||+|..|.++|..|++.|++|.++++.+
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 3589999999999999999999999999999875
No 398
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.67 E-value=0.049 Score=48.24 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=48.2
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhh-h---HHHHc-C-----------ceEecChHHHhccCCCEEE
Q 023897 10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHS-Q---LCHRS-G-----------ISFFSDKRAFLEADNDVIL 72 (275)
Q Consensus 10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~-~---~a~~~-g-----------~~~~~~~~~~~~~~aD~ii 72 (275)
..++|+|-| .|-+|+++.+.|.++||.|.+.-|+++. + ...+. | +.-..+.+++ +++||.||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~a-i~gcdgVf 83 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKA-IDGCDGVF 83 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHH-HhCCCEEE
Confidence 568999999 5999999999999999999999998842 1 22221 1 1223456776 48999988
Q ss_pred Eec
Q 023897 73 IST 75 (275)
Q Consensus 73 lav 75 (275)
=+-
T Consensus 84 H~A 86 (327)
T KOG1502|consen 84 HTA 86 (327)
T ss_pred EeC
Confidence 653
No 399
>PRK07538 hypothetical protein; Provisional
Probab=95.66 E-value=0.015 Score=53.55 Aligned_cols=33 Identities=27% Similarity=0.206 Sum_probs=31.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
|+|.|||+|.-|.++|..|+++|++|+++++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 689999999999999999999999999999875
No 400
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.65 E-value=0.016 Score=52.94 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCC
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT 43 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~ 43 (275)
.++|.|||+|..|.++|..|+++|++|.++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 468999999999999999999999999999997
No 401
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.63 E-value=0.059 Score=50.06 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=45.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh--hHHHHcCceEec--ChHHHhccCCCEEEEe
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS--QLCHRSGISFFS--DKRAFLEADNDVILIS 74 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~--~~a~~~g~~~~~--~~~~~~~~~aD~iila 74 (275)
..++|.|+|.|..|.+.++.|++.|++|+++|.++.. ....+.|+.+.. ..... +++.|++|.+
T Consensus 5 ~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~-~~~~d~vv~s 72 (438)
T PRK03806 5 QGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEW-LLAADLIVAS 72 (438)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHH-hcCCCEEEEC
Confidence 3568999999999999999999999999999976531 112334765432 12222 3678876665
No 402
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.61 E-value=0.12 Score=46.45 Aligned_cols=69 Identities=19% Similarity=0.361 Sum_probs=48.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcC---Ch-hhhHHHHcCceEecChHHH-----hccCCCEEEEecCch
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSR---TD-HSQLCHRSGISFFSDKRAF-----LEADNDVILISTSIL 78 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr---~~-~~~~a~~~g~~~~~~~~~~-----~~~~aD~iilavp~~ 78 (275)
...+|.|+|+|.+|...+..++..|.+|+++++ ++ ..+.+++.|+......++- .....|+||-|+...
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 249 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP 249 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH
Confidence 346899999999999999999999999999988 34 3456777777543211100 013467888877753
No 403
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.58 E-value=0.014 Score=50.98 Aligned_cols=90 Identities=19% Similarity=0.195 Sum_probs=62.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-h-HHHHcCce---Ee---cChHHHhccCCCEEEEecCc--hhH
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-Q-LCHRSGIS---FF---SDKRAFLEADNDVILISTSI--LSL 80 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~-~a~~~g~~---~~---~~~~~~~~~~aD~iilavp~--~~~ 80 (275)
.-||.|||.|.+|+--|+.....|-+|++.|+|.+. . .....+.+ .. .++++. +.++|++|=+|-. ...
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~-v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEA-VKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHH-hhhccEEEEEEEecCCCC
Confidence 458999999999999999988889999999999753 2 22222322 22 234554 4899999988643 222
Q ss_pred HH-HhhcC-CCCCCCCCcEEEeCCC
Q 023897 81 SE-VLNSL-PVHCLQRRTLIADVLS 103 (275)
Q Consensus 81 ~~-v~~~l-~~~~l~~~~iv~d~~s 103 (275)
.. +.++. .. +++|.+++|++-
T Consensus 247 PkLvt~e~vk~--MkpGsVivDVAi 269 (371)
T COG0686 247 PKLVTREMVKQ--MKPGSVIVDVAI 269 (371)
T ss_pred ceehhHHHHHh--cCCCcEEEEEEE
Confidence 22 33343 44 789999999873
No 404
>PRK07045 putative monooxygenase; Reviewed
Probab=95.55 E-value=0.02 Score=52.22 Aligned_cols=35 Identities=26% Similarity=0.328 Sum_probs=32.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
...+|.|||+|..|.++|..|+++|++|+++++.+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 45689999999999999999999999999999776
No 405
>PRK07588 hypothetical protein; Provisional
Probab=95.53 E-value=0.018 Score=52.51 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=30.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
++|.|||.|..|.++|..|++.|++|+++++.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 589999999999999999999999999998765
No 406
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.51 E-value=0.02 Score=52.38 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=31.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
..+|.|||+|..|.++|..|++.|++|.++++.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3589999999999999999999999999999875
No 407
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.44 E-value=0.028 Score=48.84 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=30.4
Q ss_pred eEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 13 KIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 13 ~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
+|.|+| +|.+|+.+++.|.+.|++|.+..|+++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~ 34 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSS 34 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 588999 599999999999999999999999974
No 408
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.35 E-value=0.028 Score=55.13 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=31.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
.+|.|||.|.+|.+.|..|++.|++|+++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 589999999999999999999999999999874
No 409
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.35 E-value=0.023 Score=52.04 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=31.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
.||.|||+|.-|.++|..|++.|++|.++++.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 689999999999999999999999999999875
No 410
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.34 E-value=0.038 Score=49.57 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=50.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHH--------CCC--eEE-EEcCChh--------hhH----HHHcCc--eEe-------c
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIK--------QGH--ILR-ATSRTDH--------SQL----CHRSGI--SFF-------S 58 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~--------~g~--~V~-~~dr~~~--------~~~----a~~~g~--~~~-------~ 58 (275)
.++|+|+|+|++|+.+++.|.+ .|. +|. +.|++.. ... ..+.+. ... .
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4799999999999999999877 453 444 3454421 111 111111 111 1
Q ss_pred ChHHHh-ccCCCEEEEecCchhHHHHhhcCCCCCCCCCcEEE
Q 023897 59 DKRAFL-EADNDVILISTSILSLSEVLNSLPVHCLQRRTLIA 99 (275)
Q Consensus 59 ~~~~~~-~~~aD~iilavp~~~~~~v~~~l~~~~l~~~~iv~ 99 (275)
+.++.+ ..++|+||=+++.+...++.... +..|.-++
T Consensus 82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~a----l~~G~~VV 119 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTNDKNAHEWHLEA----LKEGKSVV 119 (336)
T ss_pred CHHHHHhcCCCCEEEECCCcHHHHHHHHHH----HhhCCcEE
Confidence 455543 14789999999887766666665 34454444
No 411
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.34 E-value=0.025 Score=51.55 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
+..+|.|||.|..|.++|..|++.|++|+++++.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 44689999999999999999999999999999764
No 412
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.34 E-value=0.032 Score=52.24 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
+..++|+|||+|.-|.+.|+.|.+.|++|+++++++.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3457899999999999999999999999999998753
No 413
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.33 E-value=0.023 Score=52.86 Aligned_cols=38 Identities=29% Similarity=0.520 Sum_probs=34.1
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
.+..++|+|||+|.-|.+.|++|.+.|++++++.|++.
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 45568999999999999999999999999999988764
No 414
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.31 E-value=0.024 Score=51.50 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=30.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCC
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT 43 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~ 43 (275)
+.+|.|||+|..|.++|..|++.|++|+++++.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 357999999999999999999999999999975
No 415
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=95.31 E-value=0.026 Score=51.01 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
..|.|||.|.+|.++|..|++.|++|+++++..
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 469999999999999999999999999999875
No 416
>PRK06126 hypothetical protein; Provisional
Probab=95.29 E-value=0.027 Score=53.80 Aligned_cols=35 Identities=31% Similarity=0.344 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
...+|.|||+|..|.++|..|++.|++|+++++.+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 34689999999999999999999999999999775
No 417
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.27 E-value=0.13 Score=45.92 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=47.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChh-hhHHHHcCceEec-----ChHHHhc--cCCCEEEEecCc
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDH-SQLCHRSGISFFS-----DKRAFLE--ADNDVILISTSI 77 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~-~~~a~~~g~~~~~-----~~~~~~~--~~aD~iilavp~ 77 (275)
..+|.|+|+|.+|...+..++..|. +|++.+++++ .+.+.+.|+...- +..+... ...|++|-|+..
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~ 245 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH 245 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC
Confidence 5689999999999999998888897 6888998884 5677778874221 1222110 125777777765
No 418
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=95.23 E-value=0.032 Score=50.52 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
+.+++|.|||.|-+|.+.|..|++.|++|+++++..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 356789999999999999999999999999999876
No 419
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.21 E-value=0.031 Score=49.58 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=30.2
Q ss_pred eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
.|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 48999999999999999999999999999983
No 420
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.19 E-value=0.031 Score=51.27 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=30.7
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCC
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT 43 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~ 43 (275)
..+|.|||+|..|.++|..|++.|++|+++++.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 457999999999999999999999999999985
No 421
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.18 E-value=0.19 Score=43.56 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=37.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCe-EEEEcCChh-hhHHHHcCce
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHI-LRATSRTDH-SQLCHRSGIS 55 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~-V~~~dr~~~-~~~a~~~g~~ 55 (275)
...+|.|+|+|.+|...+..++..|.+ |++.+++++ .+.+++.|+.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 345899999999999999999889986 888888874 4667777763
No 422
>PRK09126 hypothetical protein; Provisional
Probab=95.17 E-value=0.029 Score=51.11 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=31.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
..+|.|||+|.-|.++|..|++.|++|+++++.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4679999999999999999999999999999864
No 423
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.16 E-value=0.027 Score=51.80 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=31.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHCC-CeEEEEcCChh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQG-HILRATSRTDH 45 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~~ 45 (275)
|||.|||+|.-|.++|..|+++| ++|+++++.+.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 68999999999999999999998 49999998764
No 424
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.15 E-value=0.04 Score=51.48 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
..+.|.|||+|.-|.+.|..|+++|++|.++++.+
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 44689999999999999999999999999999764
No 425
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.13 E-value=0.044 Score=49.79 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=32.5
Q ss_pred CCCCeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 9 SSTLKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 9 ~~~~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
...|||.|.|. |.+|+.+++.|.+.||+|++.+|..
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 46789999995 9999999999999999999999864
No 426
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.11 E-value=0.029 Score=51.37 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=30.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
..|.|||+|..|.++|..|++.|++|+++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 469999999999999999999999999998764
No 427
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.09 E-value=0.059 Score=49.12 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=31.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCC
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRT 43 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~ 43 (275)
...||.|+|+|.+|+.++..|+..|. +++++|++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45689999999999999999999997 79999987
No 428
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=95.06 E-value=0.029 Score=50.73 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=30.0
Q ss_pred eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
.|.|||+|.-|.++|..|+++|++|+++++.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 38999999999999999999999999999885
No 429
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.00 E-value=0.036 Score=51.14 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=30.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCC
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRT 43 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~ 43 (275)
+++|.|||+|..|...|..|++.|++|.+++..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~r 34 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMR 34 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 468999999999999999999999999999854
No 430
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.99 E-value=0.093 Score=53.28 Aligned_cols=71 Identities=30% Similarity=0.512 Sum_probs=53.3
Q ss_pred CCCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh----------------------hHHHHcCceEe------
Q 023897 6 PSSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS----------------------QLCHRSGISFF------ 57 (275)
Q Consensus 6 ~~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~----------------------~~a~~~g~~~~------ 57 (275)
|......+|+|||.|.-|.+-|..|-+.||.|++|.|+... ....+.|+.+.
T Consensus 1780 p~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eig 1859 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIG 1859 (2142)
T ss_pred cccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccc
Confidence 34567889999999999999999999999999999887421 01123466432
Q ss_pred --cChHHHhccCCCEEEEecCc
Q 023897 58 --SDKRAFLEADNDVILISTSI 77 (275)
Q Consensus 58 --~~~~~~~~~~aD~iilavp~ 77 (275)
-+++++ .+..|.|++|+..
T Consensus 1860 k~vs~d~l-~~~~daiv~a~gs 1880 (2142)
T KOG0399|consen 1860 KHVSLDEL-KKENDAIVLATGS 1880 (2142)
T ss_pred ccccHHHH-hhccCeEEEEeCC
Confidence 245674 5789999999765
No 431
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=94.99 E-value=0.036 Score=50.67 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
..+|.|||+|..|.++|..|++.|++|.++++.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 4689999999999999999999999999999875
No 432
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=94.97 E-value=0.036 Score=50.63 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHC--CCeEEEEcCCh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQ--GHILRATSRTD 44 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~--g~~V~~~dr~~ 44 (275)
..|.|||+|.+|.++|..|++. |++|+++++.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 5799999999999999999998 99999999874
No 433
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.95 E-value=0.045 Score=46.25 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
...||.|+|+|.+|+.+++.|+..|. +++++|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45689999999999999999999997 788888764
No 434
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=94.94 E-value=0.21 Score=44.04 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=57.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHCCCeEE-EEcCChhhhHHHHcCceEecChHHHhccC--CCEEEEecCchhHHHHhh
Q 023897 10 STLKIGIIG-FGPFGQFLAKTMIKQGHILR-ATSRTDHSQLCHRSGISFFSDKRAFLEAD--NDVILISTSILSLSEVLN 85 (275)
Q Consensus 10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~-~~dr~~~~~~a~~~g~~~~~~~~~~~~~~--aD~iilavp~~~~~~v~~ 85 (275)
+..||.|.| +|..|+..-..+...|-+|. +++..... ..-.|+..+.++.++ .+. .|+.++++|...+.++++
T Consensus 11 ~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~~--~~i~G~~~y~sv~dl-p~~~~~DlAvI~vPa~~v~~al~ 87 (300)
T PLN00125 11 KNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG--TEHLGLPVFNTVAEA-KAETKANASVIYVPPPFAAAAIL 87 (300)
T ss_pred CCCeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCCC--ceEcCeeccCCHHHH-hhccCCCEEEEecCHHHHHHHHH
Confidence 346899999 89999999999999987765 45555211 112477888888885 343 699999999999999998
Q ss_pred cC
Q 023897 86 SL 87 (275)
Q Consensus 86 ~l 87 (275)
+.
T Consensus 88 e~ 89 (300)
T PLN00125 88 EA 89 (300)
T ss_pred HH
Confidence 87
No 435
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.93 E-value=0.097 Score=48.97 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=42.5
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHc-CceEe-cChHHHhccCCCEEEEe
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRS-GISFF-SDKRAFLEADNDVILIS 74 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~-g~~~~-~~~~~~~~~~aD~iila 74 (275)
+....||+|+|+|.-|.+.++.|.+ |.+|+++|.++. .....+. ..... ....+. ..++|+||++
T Consensus 3 ~~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vV~S 70 (454)
T PRK01368 3 SHTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSR-WQNLDKIVLS 70 (454)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhH-hhCCCEEEEC
Confidence 3456789999999999999999995 999999996542 1111111 11111 112232 3679998887
No 436
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.90 E-value=0.077 Score=48.25 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=31.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
...+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 34689999999999999999999996 899998873
No 437
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.90 E-value=0.22 Score=44.41 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=47.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh-hhHHHHcCceEecChHHHhccCCCEEEEecCch
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH-SQLCHRSGISFFSDKRAFLEADNDVILISTSIL 78 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~-~~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~ 78 (275)
..+|.|.|+|.+|...+..++..|.+|++.+++++ .+.+++.|+...-+..+......|+++.++...
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~ 234 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG 234 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH
Confidence 45899999999999888888888988998898874 577888887432221110113467777766543
No 438
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.89 E-value=0.032 Score=49.27 Aligned_cols=87 Identities=11% Similarity=0.132 Sum_probs=54.5
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHCCCe---EEEEcCC---hhhh-HHHHcCceEecChHHHhccCCCEEEEecCchhHH
Q 023897 10 STLKIGIIG-FGPFGQFLAKTMIKQGHI---LRATSRT---DHSQ-LCHRSGISFFSDKRAFLEADNDVILISTSILSLS 81 (275)
Q Consensus 10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~---V~~~dr~---~~~~-~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~~ 81 (275)
..++|+| | +|.+|..|-..|.+.++. +..++.. .... ......+.+. ++++...++.|++|+ .+.....
T Consensus 2 ~~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~-~l~~~~f~~vDia~f-ag~~~s~ 78 (322)
T PRK06901 2 ATLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQI-APEEVEWADFNYVFF-AGKMAQA 78 (322)
T ss_pred CcceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEE-ECCccCcccCCEEEE-cCHHHHH
Confidence 4578999 9 599999999999999873 4444332 2111 0011111111 111112378999999 8877666
Q ss_pred HHhhcCCCCCCCCCcEEEeCCC
Q 023897 82 EVLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 82 ~v~~~l~~~~l~~~~iv~d~~s 103 (275)
+..... ...|++++|.+|
T Consensus 79 ~~ap~a----~~aG~~VIDnSs 96 (322)
T PRK06901 79 EHLAQA----AEAGCIVIDLYG 96 (322)
T ss_pred HHHHHH----HHCCCEEEECCh
Confidence 665544 457899999876
No 439
>PLN02477 glutamate dehydrogenase
Probab=94.87 E-value=0.088 Score=48.41 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEE-EEcCC
Q 023897 7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILR-ATSRT 43 (275)
Q Consensus 7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~-~~dr~ 43 (275)
.+.+.++|+|.|+|++|+.+|+.|.+.|.+|+ +.|.+
T Consensus 202 ~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~ 239 (410)
T PLN02477 202 KSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT 239 (410)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence 35677899999999999999999999999888 56665
No 440
>PRK06184 hypothetical protein; Provisional
Probab=94.86 E-value=0.041 Score=52.08 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=32.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
+..+|.|||+|..|.++|..|++.|++|+++++.+
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 34689999999999999999999999999999864
No 441
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.83 E-value=0.061 Score=45.08 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=32.3
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
..++|.|+| .|.+|..+++.|.+.|++|++.+|++.
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~ 41 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQK 41 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHH
Confidence 456899999 599999999999999999999999874
No 442
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.82 E-value=0.11 Score=48.74 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=44.7
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh--hhH--HHHcCc-eEec-ChHHHhccCCCEEEEec
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH--SQL--CHRSGI-SFFS-DKRAFLEADNDVILIST 75 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~--~~~--a~~~g~-~~~~-~~~~~~~~~aD~iilav 75 (275)
..+||+|+|+|.-|.+.++.|.+.|.+|+++|.++. ... ..+.+. .... ...+. +.++|+||.+-
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~d~vV~Sp 77 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQR-LAAFDVVVKSP 77 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHH-ccCCCEEEECC
Confidence 356899999999999999999999999999996542 111 122233 2211 12232 36899998873
No 443
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=94.81 E-value=0.039 Score=53.80 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=32.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
+..+|.|||+|..|.++|.+|++.|++|.+++|++
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45789999999999999999999999999999864
No 444
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.81 E-value=0.054 Score=46.18 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=33.0
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
..+++|.|+| .|.+|+.+++.|.+.|++|++..|+++
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~ 52 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVD 52 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 3568999999 599999999999999999999998874
No 445
>PRK10537 voltage-gated potassium channel; Provisional
Probab=94.80 E-value=0.086 Score=48.30 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=46.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE-e---cCh---HHHhccCCCEEEEecCchh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF-F---SDK---RAFLEADNDVILISTSILS 79 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~-~---~~~---~~~~~~~aD~iilavp~~~ 79 (275)
+.+|-|+|.|.+|..+++.|.+.|+++++.+.++. +...+.|..+ . ++. +++-+++|+.++++++.+.
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~-~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~ 314 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGL-EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDA 314 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchh-hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChH
Confidence 45699999999999999999999999999887642 2222233311 1 122 2222368888888888764
No 446
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.78 E-value=0.064 Score=44.78 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=33.0
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
...++|.|.| .|.+|.++++.|.+.|++|++.+|++.
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~ 42 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA 42 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence 4567899999 599999999999999999999999874
No 447
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.77 E-value=0.32 Score=45.57 Aligned_cols=90 Identities=10% Similarity=0.115 Sum_probs=59.7
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh--hhh-HHHHcCceEec---ChHHHhccCCCEEEEecCchhHH
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD--HSQ-LCHRSGISFFS---DKRAFLEADNDVILISTSILSLS 81 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~--~~~-~a~~~g~~~~~---~~~~~~~~~aD~iilavp~~~~~ 81 (275)
....++|.|||.|.++..=++.|.+.|.+|+++.+.- +.. .+.+..++... ...+ ++++++||.||....+.
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~d--l~~~~lv~~at~d~~~n 86 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESL--LDTCWLAIAATDDDAVN 86 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHH--hCCCEEEEECCCCHHHh
Confidence 3567899999999999999999999999999997653 332 22222332211 2233 37999999999987665
Q ss_pred HHhhcCCCCCCCCCcEEEeCCC
Q 023897 82 EVLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 82 ~v~~~l~~~~l~~~~iv~d~~s 103 (275)
.-+... .+...+++++..
T Consensus 87 ~~i~~~----a~~~~~lvN~~d 104 (457)
T PRK10637 87 QRVSEA----AEARRIFCNVVD 104 (457)
T ss_pred HHHHHH----HHHcCcEEEECC
Confidence 444443 222345565543
No 448
>PLN02985 squalene monooxygenase
Probab=94.75 E-value=0.055 Score=51.41 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
...+|.|||+|..|.++|..|+++|++|.++++++
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 44589999999999999999999999999999874
No 449
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.74 E-value=0.066 Score=44.88 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=32.9
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
+..++|.|.| .|.+|..+++.|.++|++|++.+|++.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~ 40 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE 40 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 3456899999 599999999999999999999999874
No 450
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.72 E-value=0.054 Score=45.89 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=31.5
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
...+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 45689999999999999999999997 899998775
No 451
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=94.72 E-value=0.14 Score=44.80 Aligned_cols=85 Identities=12% Similarity=0.160 Sum_probs=62.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChhh-hHHHHcCceEecChHHHhccCCCEEEEecCchhH--HHHhhcCC
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDHS-QLCHRSGISFFSDKRAFLEADNDVILISTSILSL--SEVLNSLP 88 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~~-~~a~~~g~~~~~~~~~~~~~~aD~iilavp~~~~--~~v~~~l~ 88 (275)
+.+.|.|.|-+|..-|.+|+..|..|++...+|-. ..|.-.|.+++ .++++ ....|+++-++.-..+ .+-+++
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea-~~e~difVTtTGc~dii~~~H~~~-- 290 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEA-IREVDIFVTTTGCKDIITGEHFDQ-- 290 (434)
T ss_pred cEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHh-hhcCCEEEEccCCcchhhHHHHHh--
Confidence 34556799999999999999999999999999843 34444577764 56776 4899999988875432 233333
Q ss_pred CCCCCCCcEEEeCCC
Q 023897 89 VHCLQRRTLIADVLS 103 (275)
Q Consensus 89 ~~~l~~~~iv~d~~s 103 (275)
++.++|+.+++-
T Consensus 291 ---mk~d~IvCN~Gh 302 (434)
T KOG1370|consen 291 ---MKNDAIVCNIGH 302 (434)
T ss_pred ---CcCCcEEecccc
Confidence 667888887663
No 452
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=94.70 E-value=0.058 Score=51.56 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
....+|.|||+|..|.++|..|++.|++|.++++.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 445689999999999999999999999999999875
No 453
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=94.67 E-value=0.19 Score=44.98 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=51.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHC-CCeEEEE-cCC--hh-hhHHHHc----Cc-------------------eEe--cChH
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQ-GHILRAT-SRT--DH-SQLCHRS----GI-------------------SFF--SDKR 61 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~-g~~V~~~-dr~--~~-~~~a~~~----g~-------------------~~~--~~~~ 61 (275)
+||+|.|+|+||+.+.+.+.+. +.+|... |+. .+ .....+. |- .+. .+++
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~~ 82 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAIA 82 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCChh
Confidence 6999999999999999998765 3566543 422 22 2222221 10 111 1333
Q ss_pred HHhccCCCEEEEecCchhHHHHhhcCCCCCCCCCcEEEeCCC
Q 023897 62 AFLEADNDVILISTSILSLSEVLNSLPVHCLQRRTLIADVLS 103 (275)
Q Consensus 62 ~~~~~~aD~iilavp~~~~~~v~~~l~~~~l~~~~iv~d~~s 103 (275)
+.-.++.|++|.|+......+..... +..|+..+|+++
T Consensus 83 ~~~w~gvDiVle~tG~~~s~~~a~~h----l~aGak~V~iSa 120 (334)
T PRK08955 83 DTDWSGCDVVIEASGVMKTKALLQAY----LDQGVKRVVVTA 120 (334)
T ss_pred hCCccCCCEEEEccchhhcHHHHHHH----HHCCCEEEEECC
Confidence 32124788888888876555544443 455666666654
No 454
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=94.66 E-value=0.049 Score=49.43 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=31.8
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
..+|.|||+|.-|.++|..|++.|++|+++++.+.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 45799999999999999999999999999998753
No 455
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=94.62 E-value=0.086 Score=44.79 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=35.2
Q ss_pred CCCCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 5 SPSSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 5 ~~~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
.....+.++|.|.| .|.+|..+++.|.+.|++|++++|+++
T Consensus 5 ~~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~ 46 (256)
T PRK06124 5 QRFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAA 46 (256)
T ss_pred cccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 34455678899999 599999999999999999999999874
No 456
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.62 E-value=0.064 Score=45.91 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=31.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
...||+|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 45689999999999999999999996 788888764
No 457
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.62 E-value=0.046 Score=49.46 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=29.8
Q ss_pred eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
.|.|||+|.+|.+.|..|++.|++|+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999864
No 458
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=94.61 E-value=0.069 Score=47.97 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=34.9
Q ss_pred CCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 7 SSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 7 ~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
.++..|+|.|.| +|.+|+.+++.|.+.|++|++.+|+..
T Consensus 6 ~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~ 45 (353)
T PLN02896 6 RESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPA 45 (353)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChH
Confidence 467789999999 699999999999999999999888763
No 459
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.60 E-value=0.057 Score=44.61 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
...||+|||+|.+|+.+++.|...|. +++++|.+.
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 35789999999999999999999997 699998774
No 460
>PRK08328 hypothetical protein; Provisional
Probab=94.60 E-value=0.06 Score=45.62 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=31.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
...||.|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35689999999999999999999996 799998775
No 461
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=94.57 E-value=0.044 Score=49.67 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=29.8
Q ss_pred eEEEEcCChHHHHHHHHHHHCC-CeEEEEcCCh
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQG-HILRATSRTD 44 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~dr~~ 44 (275)
.|.|||+|..|.++|..|+++| ++|+++++.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 3899999999999999999999 9999999865
No 462
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.55 E-value=0.063 Score=45.79 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=31.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
...||.|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 45689999999999999999999996 788988875
No 463
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.55 E-value=0.084 Score=50.45 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=31.9
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
..+.|.|.| .|.+|..+++.|.+.|++|++++|+..
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e 115 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ 115 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 445688999 599999999999999999999999874
No 464
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.54 E-value=0.076 Score=44.81 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=33.0
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
...++|.|+| .|.+|..+++.|.+.|++|++.+|++.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3457899999 599999999999999999999999974
No 465
>PRK14031 glutamate dehydrogenase; Provisional
Probab=94.51 E-value=0.29 Score=45.38 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEE-Ec
Q 023897 7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRA-TS 41 (275)
Q Consensus 7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~-~d 41 (275)
.+.+.++|.|.|.|++|...|+.|.+.|.+|++ .|
T Consensus 224 ~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 224 TDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 356788999999999999999999999999887 55
No 466
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=94.51 E-value=0.078 Score=47.43 Aligned_cols=24 Identities=29% Similarity=0.724 Sum_probs=21.2
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCC
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQG 34 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g 34 (275)
++||+|.|+|++|+.+.+.|.+.+
T Consensus 1 ~~~IaInGfGrIGR~~lr~l~e~~ 24 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYESG 24 (336)
T ss_pred CeEEEEECcCHHHHHHHHHHHhcC
Confidence 369999999999999999998753
No 467
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.51 E-value=0.071 Score=45.51 Aligned_cols=35 Identities=9% Similarity=0.167 Sum_probs=30.1
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCC-----------CeEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQG-----------HILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g-----------~~V~~~dr~~ 44 (275)
...||.|||+|.+|+.++..|++.| .+++++|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 5579999999999999999999864 2889998774
No 468
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.50 E-value=0.072 Score=47.62 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=44.0
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCChhhhHHHHcCceEecChHHHhccCCCEEEEec
Q 023897 8 SSSTLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTDHSQLCHRSGISFFSDKRAFLEADNDVILIST 75 (275)
Q Consensus 8 ~~~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~~~~~a~~~g~~~~~~~~~~~~~~aD~iilav 75 (275)
.....+|.|||+|.||...++.|.++|. +|++.+|+.......+... ..-+. ...+|+||.|+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~----~~~~~-~~~~DvVIs~t 234 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVR----EELSF-QDPYDVIFFGS 234 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhh----hhhhc-ccCCCEEEEcC
Confidence 3466899999999999999999999995 7999999974211100000 00021 25889999873
No 469
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=94.49 E-value=0.16 Score=49.02 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=33.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 9 SSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 9 ~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
+..+||+|||.|..|..++...++.|++|.++|.+++
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~ 56 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED 56 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4567999999999999999999999999999998874
No 470
>PTZ00367 squalene epoxidase; Provisional
Probab=94.47 E-value=0.06 Score=51.76 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=32.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
...+|.|||+|..|.++|..|+++|++|.+++|++
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45689999999999999999999999999999875
No 471
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.46 E-value=0.078 Score=44.68 Aligned_cols=37 Identities=11% Similarity=0.051 Sum_probs=32.9
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
++.++|.|.| .|.+|.++++.|.++|++|++.+|++.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~ 41 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGD 41 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4457899999 699999999999999999999999863
No 472
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.46 E-value=0.063 Score=44.34 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=31.3
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
...||+|+|+|.+|+.+++.|...|. +++++|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 45789999999999999999999997 799998774
No 473
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.45 E-value=0.55 Score=42.12 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=27.4
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHC-CCeEEE-EcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQ-GHILRA-TSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~-g~~V~~-~dr~~ 44 (275)
.++||||+|+|+||...++.+.+. +.++.+ .|++.
T Consensus 4 ~~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~ 40 (338)
T PLN02358 4 KKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI 40 (338)
T ss_pred CceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC
Confidence 357999999999999999998765 566665 56543
No 474
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.43 E-value=0.071 Score=46.19 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=31.2
Q ss_pred CCCeEEEEcCChHHHHHHHHHHHCCC-eEEEEcCCh
Q 023897 10 STLKIGIIGFGPFGQFLAKTMIKQGH-ILRATSRTD 44 (275)
Q Consensus 10 ~~~~I~IIG~G~mG~sla~~L~~~g~-~V~~~dr~~ 44 (275)
...+|.|+|+|.+|+..|..|++.|. +++++|.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 45689999999999999999999994 899998774
No 475
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=94.41 E-value=0.056 Score=51.54 Aligned_cols=34 Identities=26% Similarity=0.535 Sum_probs=28.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
+||+|||+|.-|.+.++.|.+.|++++++++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 6899999999999999999999999999998875
No 476
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=94.41 E-value=0.077 Score=45.74 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=40.4
Q ss_pred EEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHH-HHcCceEecChHHHhcc-CCCEEEEec
Q 023897 14 IGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLC-HRSGISFFSDKRAFLEA-DNDVILIST 75 (275)
Q Consensus 14 I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a-~~~g~~~~~~~~~~~~~-~aD~iilav 75 (275)
|.|-| +|.||++|...|.+.||+|++..|++..... ....+...+.+++. .. .+|+||--.
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~-~~~~~DavINLA 64 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADA-LTLGIDAVINLA 64 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhc-ccCCCCEEEECC
Confidence 34556 8999999999999999999999999853221 11222222334442 23 588887543
No 477
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=94.33 E-value=0.074 Score=47.78 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=32.4
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
..++||.|.| +|.+|+.+++.|.+.|++|+++||..
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4568999999 69999999999999999999999854
No 478
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=94.31 E-value=0.062 Score=48.42 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=30.0
Q ss_pred eEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
.|.|||.|.+|.+.|..|++.|++|+++++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 58999999999999999999999999999875
No 479
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.31 E-value=0.12 Score=44.12 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=48.1
Q ss_pred CeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChhhhHHHHcCceE-------ecChHHHhccCCCEEEEecC
Q 023897 12 LKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDHSQLCHRSGISF-------FSDKRAFLEADNDVILISTS 76 (275)
Q Consensus 12 ~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~~~~a~~~g~~~-------~~~~~~~~~~~aD~iilavp 76 (275)
|+|.|.| +|.+|+.+...|.+.|++|.+..|+++.......++.. ..++..+ +.+.|.++++.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~~~v~~~~~d~~~~~~l~~a-~~G~~~~~~i~~ 72 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALAGGVEVVLGDLRDPKSLVAG-AKGVDGVLLISG 72 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhcCCcEEEEeccCCHhHHHHH-hccccEEEEEec
Confidence 5899999 79999999999999999999999998643222245432 1233443 478899888888
No 480
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=94.31 E-value=0.23 Score=40.42 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=47.9
Q ss_pred eEEEEcCChHHHHHHHHHHHCCCeEEEE-cCChhhhHHHHcCceEecChHHHh--ccCCCEEEEecCchhH-HHHhhcC
Q 023897 13 KIGIIGFGPFGQFLAKTMIKQGHILRAT-SRTDHSQLCHRSGISFFSDKRAFL--EADNDVILISTSILSL-SEVLNSL 87 (275)
Q Consensus 13 ~I~IIG~G~mG~sla~~L~~~g~~V~~~-dr~~~~~~a~~~g~~~~~~~~~~~--~~~aD~iilavp~~~~-~~v~~~l 87 (275)
++.|+|+|..|..++..|.+.|+++.++ |.++......-.|..+....+++. ..+.+.++++++.... .++++.+
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~~~i~~~l 79 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGDNKLRRRLFEKL 79 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCCHHHHHHHHHHH
Confidence 4789999999999999999999998875 544432211224555544444321 2345789999875433 3444443
No 481
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.29 E-value=0.16 Score=47.32 Aligned_cols=62 Identities=11% Similarity=0.191 Sum_probs=44.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHC--CCeEEEEcCChhh--hHHHHcCceEe-c--ChHHHhccCCCEEEEec
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQ--GHILRATSRTDHS--QLCHRSGISFF-S--DKRAFLEADNDVILIST 75 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~--g~~V~~~dr~~~~--~~a~~~g~~~~-~--~~~~~~~~~aD~iilav 75 (275)
++|.|||.|..|.+.++.|.+. |++|+++|.++.. ....+.|+.+. . +.+. +.++|+||++.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~--~~~~d~vV~Sp 76 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEW--LLEADLVVTNP 76 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHH--hccCCEEEECC
Confidence 6799999999999999999987 5899999976521 11123377652 2 3333 37899888874
No 482
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=94.28 E-value=0.12 Score=44.00 Aligned_cols=45 Identities=18% Similarity=0.045 Sum_probs=37.8
Q ss_pred CCcCCCCCCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 1 MAVSSPSSSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 1 ~~~~~~~~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
||.+-+..+..++|.|+| .|.+|..+++.|.+.|++|++.+|+..
T Consensus 1 ~~~~~~~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~ 46 (255)
T PRK06113 1 MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD 46 (255)
T ss_pred CCCccccCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 666645555678899999 699999999999999999999998764
No 483
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=94.27 E-value=0.082 Score=47.40 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=32.4
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
+.++|.|.| +|.+|+.+++.|.+.|++|++.+|++.
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 457899999 599999999999999999999998763
No 484
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=94.21 E-value=0.075 Score=47.60 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=30.7
Q ss_pred CCeEEEEcC-ChHHHHHHHHHHHC-CCeEEEEcCChh
Q 023897 11 TLKIGIIGF-GPFGQFLAKTMIKQ-GHILRATSRTDH 45 (275)
Q Consensus 11 ~~~I~IIG~-G~mG~sla~~L~~~-g~~V~~~dr~~~ 45 (275)
+|+|.|.|+ |.+|+.+++.|.+. |++|++.+|+..
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~ 37 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD 37 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH
Confidence 478999995 99999999999886 699999998753
No 485
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.20 E-value=0.084 Score=48.35 Aligned_cols=37 Identities=19% Similarity=0.503 Sum_probs=33.2
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
..+++|.|+| .|.+|+.+++.|.+.|++|++.+|++.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~ 95 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS 95 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence 4567999999 599999999999999999999999863
No 486
>PRK12939 short chain dehydrogenase; Provisional
Probab=94.20 E-value=0.11 Score=43.67 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=33.2
Q ss_pred CCCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 8 SSSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 8 ~~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
.+..++|.|.| .|.+|..+++.|.+.|++|++.+|+++
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~ 42 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAA 42 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 34567899999 599999999999999999999998874
No 487
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.14 E-value=0.1 Score=47.04 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=33.5
Q ss_pred CCCCCCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 7 SSSSTLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 7 ~~~~~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
.....++|.|||.|..|.+.|..|++.|++|+++++.+
T Consensus 14 ~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 51 (352)
T PRK12770 14 PPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLP 51 (352)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 34456799999999999999999999999999999864
No 488
>PRK07454 short chain dehydrogenase; Provisional
Probab=94.10 E-value=0.11 Score=43.60 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=32.0
Q ss_pred CCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 10 STLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 10 ~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
.++++.|.| .|.+|..+++.|.++|++|++.+|++.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~ 41 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQD 41 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 346789999 599999999999999999999999874
No 489
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=94.08 E-value=0.079 Score=48.11 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=31.1
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
+.+|.|+|+|..|.+-|.+|.+.|++|.+|+..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 4689999999999999999999999999998754
No 490
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=94.08 E-value=0.087 Score=45.36 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=30.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
..|+|||+|.-|.+-|..|+.+|++|+++++..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 469999999999999999999999999999874
No 491
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=94.08 E-value=0.097 Score=45.30 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=28.8
Q ss_pred eEEEEc-CChHHHHHHHHHHHCCCeEEEEcCC
Q 023897 13 KIGIIG-FGPFGQFLAKTMIKQGHILRATSRT 43 (275)
Q Consensus 13 ~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~ 43 (275)
||.|+| .|.+|+.+++.|.+.|++|++.+|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~ 32 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS 32 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc
Confidence 588999 5999999999999999999999886
No 492
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.07 E-value=0.32 Score=43.21 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=36.9
Q ss_pred CCeEEEEcCChHHHHHHHHHHHCCCe-EEEEcCChh-hhHHHHcCc
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQGHI-LRATSRTDH-SQLCHRSGI 54 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~g~~-V~~~dr~~~-~~~a~~~g~ 54 (275)
..+|.|+|+|.+|...+..++..|.+ |++.+++++ .+.+.+.|+
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga 209 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA 209 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 56899999999999999999999987 999988874 456666665
No 493
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.069 Score=49.78 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=31.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
|||+|+|+|.-|.+-|..|+++||+|++|.+.+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCc
Confidence 6899999999999999999999999999987764
No 494
>PRK08703 short chain dehydrogenase; Provisional
Probab=94.06 E-value=0.11 Score=43.60 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=33.0
Q ss_pred CCCCeEEEEc-CChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 9 SSTLKIGIIG-FGPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 9 ~~~~~I~IIG-~G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
+..++|.|.| .|.+|..+++.|.+.|++|++.+|++.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~ 41 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQK 41 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChH
Confidence 4457899999 599999999999999999999999974
No 495
>PRK08017 oxidoreductase; Provisional
Probab=94.05 E-value=0.18 Score=42.73 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=31.1
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHCCCeEEEEcCChh
Q 023897 12 LKIGIIGF-GPFGQFLAKTMIKQGHILRATSRTDH 45 (275)
Q Consensus 12 ~~I~IIG~-G~mG~sla~~L~~~g~~V~~~dr~~~ 45 (275)
++|.|.|+ |.+|.++++.|.+.|++|++.+|+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~ 37 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPD 37 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 47999996 99999999999999999999999874
No 496
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.04 E-value=0.32 Score=43.49 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=43.5
Q ss_pred CCeEEEEcCChHHHHHHHHHHH-CC-CeEEEEcCChh-hhHHHHcCceEec-ChHHHhccCCCEEEEecCc
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIK-QG-HILRATSRTDH-SQLCHRSGISFFS-DKRAFLEADNDVILISTSI 77 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~-~g-~~V~~~dr~~~-~~~a~~~g~~~~~-~~~~~~~~~aD~iilavp~ 77 (275)
..+|.|+|+|.+|...+..+++ .| .+|++.+++++ .+.+++.+..... +..+. ...|+||=++..
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~--~g~d~viD~~G~ 232 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPED--LAVDHAFECVGG 232 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhc--cCCcEEEECCCC
Confidence 4689999999999998887775 44 68999999874 4555554543211 11111 146888888873
No 497
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=94.03 E-value=0.076 Score=48.75 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
++|.|||+|.-|.+.|..|+++|++|.++++.+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 589999999999999999999999999999864
No 498
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=94.02 E-value=0.26 Score=44.02 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=24.4
Q ss_pred CCeEEEEcCChHHHHHHHHHHHC---CCeEEEEc
Q 023897 11 TLKIGIIGFGPFGQFLAKTMIKQ---GHILRATS 41 (275)
Q Consensus 11 ~~~I~IIG~G~mG~sla~~L~~~---g~~V~~~d 41 (275)
|+||||=|.|+||+.+.+.+.+. ..+|...+
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvain 34 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAIN 34 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEEec
Confidence 46999999999999999987654 35666554
No 499
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.02 E-value=0.36 Score=45.38 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=63.6
Q ss_pred CCCCeEEEEcC----------ChHHHHHHHHHHHCCCeEEEEcCChhhh-HHHHc----------------------Cce
Q 023897 9 SSTLKIGIIGF----------GPFGQFLAKTMIKQGHILRATSRTDHSQ-LCHRS----------------------GIS 55 (275)
Q Consensus 9 ~~~~~I~IIG~----------G~mG~sla~~L~~~g~~V~~~dr~~~~~-~a~~~----------------------g~~ 55 (275)
....||+|+|+ ..-...++..|.+.|.+|.+||+--... ..... +++
T Consensus 322 ~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (473)
T PLN02353 322 VSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVS 401 (473)
T ss_pred cCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhccccccccccccccccccccccee
Confidence 45679999996 3367789999999999999999863221 11011 234
Q ss_pred EecChHHHhccCCCEEEEecCchhHHHH-hhcC-CCCCCCCCcEEEeCCCCCh
Q 023897 56 FFSDKRAFLEADNDVILISTSILSLSEV-LNSL-PVHCLQRRTLIADVLSVKE 106 (275)
Q Consensus 56 ~~~~~~~~~~~~aD~iilavp~~~~~~v-~~~l-~~~~l~~~~iv~d~~s~k~ 106 (275)
...+..++ ++++|+|+++++-..+.++ ++.+ .. +....+|+|..++-.
T Consensus 402 ~~~~~~~a-~~~aD~vvi~t~~~ef~~l~~~~~~~~--m~~~~~viD~rn~l~ 451 (473)
T PLN02353 402 VVWDAYEA-TKGAHGICILTEWDEFKTLDYQKIYDN--MQKPAFVFDGRNVLD 451 (473)
T ss_pred eeCCHHHH-hcCCCEEEECCCChHhcccCHHHHHHh--ccCCCEEEECCCCCC
Confidence 45565665 4899999999998876543 2232 22 344457899876643
No 500
>PRK08244 hypothetical protein; Provisional
Probab=94.00 E-value=0.079 Score=50.01 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=30.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHCCCeEEEEcCCh
Q 023897 12 LKIGIIGFGPFGQFLAKTMIKQGHILRATSRTD 44 (275)
Q Consensus 12 ~~I~IIG~G~mG~sla~~L~~~g~~V~~~dr~~ 44 (275)
..|.|||+|..|.++|..|++.|++|.++++.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 579999999999999999999999999999865
Done!