Your job contains 1 sequence.
>023899
MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA
SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE
ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG
SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG
YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023899
(275 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2200868 - symbol:LHCA3 "photosystem I light ha... 1119 1.9e-113 1
TAIR|locus:2825741 - symbol:Lhca5 "photosystem I light ha... 394 1.3e-36 1
TAIR|locus:2082767 - symbol:LHCA2 "photosystem I light ha... 379 5.1e-35 1
TAIR|locus:2202150 - symbol:Lhca6 "photosystem I light ha... 370 4.6e-34 1
UNIPROTKB|P12330 - symbol:CAB1R "Chlorophyll a-b binding ... 323 4.4e-29 1
TAIR|locus:2019287 - symbol:CAB3 "chlorophyll A/B binding... 320 9.1e-29 1
TAIR|locus:2019372 - symbol:CAB2 "chlorophyll A/B-binding... 320 9.1e-29 1
TAIR|locus:2019322 - symbol:CAB1 "chlorophyll A/B binding... 320 9.1e-29 1
TAIR|locus:2040944 - symbol:LHB1B1 "light-harvesting chlo... 320 9.1e-29 1
TAIR|locus:2040934 - symbol:LHB1B2 "photosystem II light ... 316 2.4e-28 1
TAIR|locus:2042148 - symbol:LHCB2.1 "photosystem II light... 313 5.0e-28 1
UNIPROTKB|P12331 - symbol:CAB2R "Chlorophyll a-b binding ... 312 6.4e-28 1
TAIR|locus:2089139 - symbol:LHCB2.3 "photosystem II light... 312 6.4e-28 1
TAIR|locus:2044988 - symbol:LHCB2.2 "photosystem II light... 311 8.2e-28 1
TAIR|locus:2122794 - symbol:LHCB5 "light harvesting compl... 301 9.4e-27 1
TAIR|locus:2162540 - symbol:LHCB3 "light-harvesting chlor... 294 5.2e-26 1
TAIR|locus:2079117 - symbol:LHCA4 "light-harvesting chlor... 290 1.4e-25 1
TAIR|locus:2082717 - symbol:LHCA1 "photosystem I light ha... 161 2.1e-24 2
TAIR|locus:2011691 - symbol:AT1G76570 species:3702 "Arabi... 273 8.7e-24 1
TAIR|locus:2097608 - symbol:LHCB4.2 "light harvesting com... 138 2.4e-20 3
TAIR|locus:2149765 - symbol:LHCB4.1 "light harvesting com... 120 3.6e-18 3
TAIR|locus:2036209 - symbol:LHCB6 "light harvesting compl... 188 8.8e-15 1
TAIR|locus:2047751 - symbol:LHCB4.3 "light harvesting com... 102 8.8e-14 3
UNIPROTKB|Q93WD2 - symbol:Lhcb4 "Chlorophyll a-b binding ... 101 2.2e-12 3
TAIR|locus:2146544 - symbol:AT5G28450 species:3702 "Arabi... 138 3.2e-09 1
>TAIR|locus:2200868 [details] [associations]
symbol:LHCA3 "photosystem I light harvesting complex gene
3" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR001344 Pfam:PF00504 EMBL:CP002684
GO:GO:0009535 GO:GO:0010287 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 PDB:2O01 PDBsum:2O01 UniGene:At.2877 EMBL:AC005850
UniGene:At.21403 EMBL:AY059879 EMBL:AY093370 IPI:IPI00532189
PIR:E96640 RefSeq:NP_001185280.1 RefSeq:NP_176347.1
UniGene:At.20472 UniGene:At.71924 UniGene:At.71944
ProteinModelPortal:Q9SY97 SMR:Q9SY97 STRING:Q9SY97 PRIDE:Q9SY97
ProMEX:Q9SY97 EnsemblPlants:AT1G61520.1 EnsemblPlants:AT1G61520.3
GeneID:842446 KEGG:ath:AT1G61520 TAIR:At1g61520 InParanoid:Q9SY97
KO:K08909 OMA:LMGFAEH PhylomeDB:Q9SY97 ProtClustDB:PLN00048
ArrayExpress:Q9SY97 Genevestigator:Q9SY97 Uniprot:Q9SY97
Length = 273
Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
Identities = 212/260 (81%), Positives = 227/260 (87%)
Query: 16 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGD 75
+TARQI G++ S S +K SFVV+AA+TPPVKQGA+RPLWFAS QSLSYLDGSLPGD
Sbjct: 16 QTARQIFGSKPVAS--ASQKKSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDGSLPGD 73
Query: 76 YGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALA 135
YGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPEILGKAGLIP ETAL
Sbjct: 74 YGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALP 133
Query: 136 WFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG 195
WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDW NPGSMG+QYFLG EK L
Sbjct: 134 WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLA 193
Query: 196 GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN 255
GSG+PAY KDEKS+K+ KLKEVKNGRLAMLAILGYF+QGLVTGVGPYQN
Sbjct: 194 GSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQN 253
Query: 256 LLDHLADPVNNNVLTSLKFH 275
LLDHLADPVNNNVLTSLKFH
Sbjct: 254 LLDHLADPVNNNVLTSLKFH 273
>TAIR|locus:2825741 [details] [associations]
symbol:Lhca5 "photosystem I light harvesting complex gene
5" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0009535 "chloroplast
thylakoid membrane" evidence=IDA] [GO:0009782 "photosystem I
antenna complex" evidence=IDA] [GO:0031409 "pigment binding"
evidence=IDA] [GO:0009768 "photosynthesis, light harvesting in
photosystem I" evidence=IGI] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0009657 "plastid organization" evidence=RCA]
[GO:0010027 "thylakoid membrane organization" evidence=RCA]
[GO:0010207 "photosystem II assembly" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 EMBL:CP002684 EMBL:AC083835
GO:GO:0009535 GO:GO:0031409 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 GO:GO:0009768
UniGene:At.52042 EMBL:AY062097 EMBL:AY090263 EMBL:AK221694
IPI:IPI00542586 PIR:F96510 RefSeq:NP_175137.1 RefSeq:NP_849778.1
UniGene:At.20798 ProteinModelPortal:Q9C639 SMR:Q9C639 STRING:Q9C639
PRIDE:Q9C639 EnsemblPlants:AT1G45474.1 EnsemblPlants:AT1G45474.2
GeneID:841099 KEGG:ath:AT1G45474 TAIR:At1g45474 InParanoid:Q9C639
KO:K08911 OMA:VQASVTH PhylomeDB:Q9C639 ProtClustDB:PLN00147
Genevestigator:Q9C639 GO:GO:0009782 Uniprot:Q9C639
Length = 256
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 85/222 (38%), Positives = 126/222 (56%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
+R W YLDG+L GDYGFDPLGL DPE KW E+++ R+AMLG
Sbjct: 45 ERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESL------KWYVQAELVHSRFAMLG 98
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
G + ++L G+ W++ G + +++ A TL V++ LMGFAE +R
Sbjct: 99 VAGILFTDLLRTTGI---RNLPVWYEAGAVK----FDF-ASTKTLIVVQFLLMGFAETKR 150
Query: 173 FQDWANPGSMGRQ--YFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKN 230
+ D+ +PGS ++ +F G E L G +P Y KD ++ D+KLKE+KN
Sbjct: 151 YMDFVSPGSQAKEGSFFFGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKN 209
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
GRLAM+A+LG+FVQ VT GP NL++HL++P + ++ +L
Sbjct: 210 GRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>TAIR|locus:2082767 [details] [associations]
symbol:LHCA2 "photosystem I light harvesting complex gene
2" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0009768 "photosynthesis, light harvesting in
photosystem I" evidence=TAS] [GO:0009782 "photosystem I antenna
complex" evidence=TAS] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009534
"chloroplast thylakoid" evidence=IDA] InterPro:IPR001344
Pfam:PF00504 EMBL:CP002686 GO:GO:0009535 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
TCDB:5.B.4.1.1 UniGene:At.46743 UniGene:At.55066 KO:K08908
EMBL:AF134120 EMBL:AY054670 EMBL:AY065429 EMBL:AY072483
EMBL:BT002070 IPI:IPI00543126 PIR:T50550 RefSeq:NP_191706.2
ProteinModelPortal:Q9SYW8 SMR:Q9SYW8 STRING:Q9SYW8 PRIDE:Q9SYW8
EnsemblPlants:AT3G61470.1 GeneID:825320 KEGG:ath:AT3G61470
TAIR:At3g61470 InParanoid:Q9SYW8 OMA:SWYTAGE PhylomeDB:Q9SYW8
ProtClustDB:CLSN2696878 ArrayExpress:Q9SYW8 Genevestigator:Q9SYW8
Uniprot:Q9SYW8
Length = 257
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 90/222 (40%), Positives = 118/222 (53%)
Query: 44 ASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGE 102
AS V DRP+WF +LDGSLPGD+GFDPLGLS DP+ KW E
Sbjct: 41 ASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSL------KWNVQAE 94
Query: 103 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEM 162
+++ R+AMLGA G PE L K G++ +W+ AG Y+ D TLFV+E+
Sbjct: 95 IVHCRWAMLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDKTTLFVVEL 145
Query: 163 ALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKS-MK 221
L+G+AE RR+ D PGS+ K G D Y + +K
Sbjct: 146 ILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKLK 203
Query: 222 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
+ + KE+KNGRLAMLA++G + Q + TG GP NL HLADP
Sbjct: 204 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>TAIR|locus:2202150 [details] [associations]
symbol:Lhca6 "photosystem I light harvesting complex gene
6" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0009744 "response to sucrose stimulus" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0019761
"glucosinolate biosynthetic process" evidence=RCA] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
metal ion transport" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002684 GO:GO:0009507 GO:GO:0016020 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 KO:K08908 EMBL:AY086461 EMBL:BT020322
EMBL:BT020554 IPI:IPI00532569 RefSeq:NP_173349.1 UniGene:At.359
ProteinModelPortal:Q8LCQ4 SMR:Q8LCQ4 STRING:Q8LCQ4 PRIDE:Q8LCQ4
DNASU:838498 EnsemblPlants:AT1G19150.1 GeneID:838498
KEGG:ath:AT1G19150 TAIR:At1g19150 InParanoid:Q8LCQ4 OMA:WFAQAEL
PhylomeDB:Q8LCQ4 ProtClustDB:PLN00098 Genevestigator:Q8LCQ4
Uniprot:Q8LCQ4
Length = 270
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 90/224 (40%), Positives = 119/224 (53%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DRPLWF +LDGSLPGD+GFDPLGL SDP+ KW A E+I+ R+AML
Sbjct: 64 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTL------KWFAQAELIHSRWAMLA 117
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
G I PE L + G I +W+ AG+ Y+AD TLFV +M LMG+AE RR
Sbjct: 118 VTGIIIPECLERLGFIEN---FSWYD------AGSREYFADSTTLFVAQMVLMGWAEGRR 168
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDE-KSMKDFKLKEVKNG 231
+ D PGS+ + + + D Y + + + + KE+KNG
Sbjct: 169 WADLIKPGSVDIEP--KYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNG 226
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
RLAMLA LG+ Q T P +NL+ HLADP + NV ++ H
Sbjct: 227 RLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
>UNIPROTKB|P12330 [details] [associations]
symbol:CAB1R "Chlorophyll a-b binding protein 1,
chloroplastic" species:39947 "Oryza sativa Japonica Group"
[GO:0009535 "chloroplast thylakoid membrane" evidence=ISS]
[GO:0015979 "photosynthesis" evidence=ISS] InterPro:IPR001344
Pfam:PF00504 GO:GO:0016021 GO:GO:0005739 GO:GO:0046872
GO:GO:0048046 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 GO:GO:0010287
GO:GO:0015979 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
HOGENOM:HOG000238032 KO:K08912 ProtClustDB:PLN00025 EMBL:X13908
EMBL:D00641 EMBL:AP005313 EMBL:AP005700 EMBL:AK060851 PIR:A44956
PIR:S03705 RefSeq:NP_001062939.1 UniGene:Os.7941
ProteinModelPortal:P12330 SMR:P12330 STRING:P12330
EnsemblPlants:LOC_Os09g17740.1 GeneID:4346803
KEGG:dosa:Os09t0346500-04 KEGG:osa:4346803 Gramene:P12330
eggNOG:NOG322441 OMA:GEARITM Uniprot:P12330
Length = 265
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 93/237 (39%), Positives = 127/237 (53%)
Query: 43 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLA 99
AAS+ GADR L+ S + SYL G PGDYG+D GLS DPE F + + L
Sbjct: 42 AASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL- 97
Query: 100 YGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP---- 154
EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 98 --EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIH 153
Query: 155 ----YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXX 210
++ +++ LMG E R G +G + Y GG+ DP
Sbjct: 154 AQSILAIWAVQVVLMGAVEGYRIAG----GPLGE---VVDPLYPGGAFDPL--------- 197
Query: 211 XXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 198 -GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>TAIR|locus:2019287 [details] [associations]
symbol:CAB3 "chlorophyll A/B binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016168 "chlorophyll
binding" evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0010287
"plastoglobule" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002684 GO:GO:0005739 GO:GO:0046872
GO:GO:0018298 GO:GO:0009535 UniGene:At.49175 GO:GO:0010287
EMBL:AC008030 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
IPI:IPI00527705 RefSeq:NP_564339.1 RefSeq:NP_564340.1
UniGene:At.10812 UniGene:At.24351 UniGene:At.27031 UniGene:At.32199
UniGene:At.43708 UniGene:At.66422 UniGene:At.70617 UniGene:At.71449
UniGene:At.71528 UniGene:At.71547 DNASU:839869 DNASU:839870
EnsemblPlants:AT1G29910.1 EnsemblPlants:AT1G29920.1 GeneID:839869
GeneID:839870 KEGG:ath:AT1G29910 KEGG:ath:AT1G29920 KO:K08912
EMBL:X03908 EMBL:AY065165 EMBL:AY114594 ProteinModelPortal:Q8VZ87
SMR:Q8VZ87 IntAct:Q8VZ87 STRING:Q8VZ87 PaxDb:Q8VZ87 PRIDE:Q8VZ87
TAIR:At1g29910 eggNOG:NOG327854 PhylomeDB:Q8VZ87
Genevestigator:Q8VZ87 GermOnline:AT1G29910 Uniprot:Q8VZ87
Length = 267
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 92/228 (40%), Positives = 122/228 (53%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR + S +S SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 52 GSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 105
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 163
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKS 219
++ LMG E R A G +G L Y GGS DP D ++
Sbjct: 164 TQVILMGAVEGYRV---AGNGPLGEAEDL---LYPGGSFDPL----------GLATDPEA 207
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>TAIR|locus:2019372 [details] [associations]
symbol:CAB2 "chlorophyll A/B-binding protein 2"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016168 "chlorophyll
binding" evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009750
"response to fructose stimulus" evidence=IEP] [GO:0005794 "Golgi
apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872
GO:GO:0048046 GO:GO:0009750 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 UniGene:At.49175
EMBL:AC008030 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 EMBL:X03907
EMBL:AY052237 EMBL:AY054198 EMBL:AY060500 EMBL:AY062814
EMBL:AY081572 EMBL:AY128345 EMBL:BT000726 EMBL:AY086905
IPI:IPI00527705 PIR:A29280 RefSeq:NP_564339.1 RefSeq:NP_564340.1
UniGene:At.10812 UniGene:At.24351 UniGene:At.27031 UniGene:At.32199
UniGene:At.43708 UniGene:At.66422 UniGene:At.70617 UniGene:At.71449
UniGene:At.71528 UniGene:At.71547 ProteinModelPortal:P0CJ48
SMR:P0CJ48 IntAct:P0CJ48 PRIDE:P0CJ48 DNASU:839869 DNASU:839870
EnsemblPlants:AT1G29910.1 EnsemblPlants:AT1G29920.1 GeneID:839869
GeneID:839870 KEGG:ath:AT1G29910 KEGG:ath:AT1G29920 TAIR:At1g29920
HOGENOM:HOG000238032 KO:K08912 PhylomeDB:P0CJ48 Uniprot:P0CJ48
Length = 267
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 92/228 (40%), Positives = 122/228 (53%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR + S +S SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 52 GSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 105
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 163
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKS 219
++ LMG E R A G +G L Y GGS DP D ++
Sbjct: 164 TQVILMGAVEGYRV---AGNGPLGEAEDL---LYPGGSFDPL----------GLATDPEA 207
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>TAIR|locus:2019322 [details] [associations]
symbol:CAB1 "chlorophyll A/B binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016168
"chlorophyll binding" evidence=ISS;TAS] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0009535 "chloroplast
thylakoid membrane" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0015979
"photosynthesis" evidence=ISS] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872
UniGene:At.23809 GO:GO:0018298 GO:GO:0009535 UniGene:At.49175
EMBL:AC008030 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
UniGene:At.10812 UniGene:At.24351 UniGene:At.32199 UniGene:At.43708
UniGene:At.66422 UniGene:At.71449 UniGene:At.71528
HOGENOM:HOG000238032 KO:K08912 eggNOG:NOG327854
GermOnline:AT1G29910 EMBL:X03909 EMBL:AF428359 EMBL:AY045673
EMBL:AY050935 EMBL:AY058180 EMBL:AY091169 EMBL:X15221 EMBL:X15222
EMBL:Z17799 IPI:IPI00547631 PIR:A86423 RefSeq:NP_174286.1
UniGene:At.19140 UniGene:At.48174 UniGene:At.71551
ProteinModelPortal:P04778 SMR:P04778 IntAct:P04778 STRING:P04778
PaxDb:P04778 PRIDE:P04778 ProMEX:P04778 EnsemblPlants:AT1G29930.1
GeneID:839871 KEGG:ath:AT1G29930 TAIR:At1g29930 InParanoid:P04778
OMA:SSGIEFY PhylomeDB:P04778 ProtClustDB:PLN00025
Genevestigator:P04778 Uniprot:P04778
Length = 267
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 92/228 (40%), Positives = 122/228 (53%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR + S +S SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 52 GSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 105
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 163
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKS 219
++ LMG E R A G +G L Y GGS DP D ++
Sbjct: 164 TQVILMGAVEGYRV---AGNGPLGEAEDL---LYPGGSFDPL----------GLATDPEA 207
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>TAIR|locus:2040944 [details] [associations]
symbol:LHB1B1 "light-harvesting chlorophyll-protein
complex II subunit B1" species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0009769
"photosynthesis, light harvesting in photosystem II" evidence=TAS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0042651 "thylakoid membrane" evidence=TAS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0010287 "plastoglobule"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] InterPro:IPR001344 Pfam:PF00504 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009941 GO:GO:0009535 GO:GO:0010287
EMBL:AC004077 EMBL:AC004481 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 UniGene:At.10812 UniGene:At.24351 UniGene:At.66422
UniGene:At.71449 UniGene:At.71528 HOGENOM:HOG000238032 KO:K08912
ProtClustDB:PLN00025 UniGene:At.22980 UniGene:At.71384
EMBL:AF326864 EMBL:AF339687 EMBL:AY120776 EMBL:BT002103 EMBL:X64459
IPI:IPI00535697 PIR:S25677 RefSeq:NP_565787.1 UniGene:At.67299
UniGene:At.71696 ProteinModelPortal:Q39142 SMR:Q39142 STRING:Q39142
PRIDE:Q39142 EnsemblPlants:AT2G34430.1 GeneID:818006
KEGG:ath:AT2G34430 TAIR:At2g34430 InParanoid:Q39142 OMA:RITMRKA
PhylomeDB:Q39142 ArrayExpress:Q39142 Genevestigator:Q39142
Uniprot:Q39142
Length = 266
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 100/258 (38%), Positives = 131/258 (50%)
Query: 29 SPTGSS--RKGSFVVRAASTP--PVKQ---GADRPLWFA--SKQSLSYLDGSLPGDYGFD 79
SP S G +R AS P P G+DR + S + SYL G PGDYG+D
Sbjct: 21 SPAASEVFGTGRITMRKASKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWD 80
Query: 80 PLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQ 138
GLS DPE F + L EVI+ R+AMLGA+G + PE+L + G+ E WF+
Sbjct: 81 TAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFK 132
Query: 139 TGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
G I G +Y +P ++ ++ LMG E R A G +G L
Sbjct: 133 AGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV---AGDGPLGEAEDL- 188
Query: 190 FEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
Y GGS DP D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG
Sbjct: 189 --LYPGGSFDPL----------GLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 236
Query: 250 VGPYQNLLDHLADPVNNN 267
GP +NL DHLADPVNNN
Sbjct: 237 KGPLENLADHLADPVNNN 254
>TAIR|locus:2040934 [details] [associations]
symbol:LHB1B2 "photosystem II light harvesting complex
gene B1B2" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0009769 "photosynthesis, light
harvesting in photosystem II" evidence=TAS] [GO:0016020 "membrane"
evidence=IEA;IDA] [GO:0016168 "chlorophyll binding"
evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0042651 "thylakoid membrane" evidence=TAS]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0015979 "photosynthesis" evidence=ISS] [GO:0010287
"plastoglobule" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009535 GO:GO:0010287
EMBL:AC004077 EMBL:AC004481 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 UniGene:At.10812 UniGene:At.24351 UniGene:At.32199
UniGene:At.66422 UniGene:At.71449 UniGene:At.71528
HOGENOM:HOG000238032 KO:K08912 ProtClustDB:PLN00025
UniGene:At.23647 UniGene:At.27457 UniGene:At.24064 UniGene:At.24888
EMBL:AF372886 EMBL:AY039561 EMBL:AY045806 EMBL:AF428397
EMBL:AF419548 EMBL:AF419587 EMBL:AY065125 EMBL:AY079101
EMBL:AY079110 EMBL:AY081587 EMBL:AY142513 EMBL:AK229627 EMBL:X64460
IPI:IPI00530785 PIR:S23546 RefSeq:NP_565786.1 UniGene:At.71003
UniGene:At.71384 ProteinModelPortal:Q39141 SMR:Q39141 IntAct:Q39141
STRING:Q39141 PRIDE:Q39141 EnsemblPlants:AT2G34420.1 GeneID:818005
KEGG:ath:AT2G34420 TAIR:At2g34420 InParanoid:Q39141
PhylomeDB:Q39141 ArrayExpress:Q39141 Genevestigator:Q39141
Uniprot:Q39141
Length = 265
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 91/228 (39%), Positives = 121/228 (53%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR + S + SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 50 GSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 103
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 161
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKS 219
++ LMG E R A G +G L Y GGS DP D ++
Sbjct: 162 TQVILMGAVEGYRV---AGDGPLGEAEDL---LYPGGSFDPL----------GLATDPEA 205
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>TAIR|locus:2042148 [details] [associations]
symbol:LHCB2.1 "photosystem II light harvesting complex
gene 2.1" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0030076 "light-harvesting
complex" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009941 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0009535 GO:GO:0010287
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
HOGENOM:HOG000238032 ProtClustDB:PLN00025 UniGene:At.48420
UniGene:At.63397 KO:K08913 EMBL:AC007443 EMBL:AY052275
EMBL:AY052348 EMBL:BT001933 IPI:IPI00535929 RefSeq:NP_178585.1
ProteinModelPortal:Q9SHR7 SMR:Q9SHR7 STRING:Q9SHR7 PRIDE:Q9SHR7
EnsemblPlants:AT2G05100.1 GeneID:815058 KEGG:ath:AT2G05100
TAIR:At2g05100 InParanoid:Q9SHR7 OMA:MAASAIQ PhylomeDB:Q9SHR7
ArrayExpress:Q9SHR7 Genevestigator:Q9SHR7 Uniprot:Q9SHR7
Length = 265
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 96/246 (39%), Positives = 126/246 (51%)
Query: 32 GSSRKGSFVVRAA--STPP-VKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-D 85
G S G +R STP + G DRP + S+ + SYL G PGDYG+D GLS D
Sbjct: 28 GVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSAD 87
Query: 86 PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPP 144
PE F + + L EVI+ R+AMLGA+G PEIL K G+ E WF+ G I
Sbjct: 88 PET---FAKNREL---EVIHSRWAMLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFS 139
Query: 145 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWA-NPGSMG--RQYFLGFEKYLGGSGDPA 201
G +Y +P + + + WA MG Y +G LG DP
Sbjct: 140 EGGLDYLGNPNLIHAQSILAI----------WAVQVVLMGFIEGYRIGGGP-LGEGLDPL 188
Query: 202 YXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLA 261
Y +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA
Sbjct: 189 YPGGAFDPLNLA-EDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLA 247
Query: 262 DPVNNN 267
DPV NN
Sbjct: 248 DPVANN 253
>UNIPROTKB|P12331 [details] [associations]
symbol:CAB2R "Chlorophyll a-b binding protein 2,
chloroplastic" species:39947 "Oryza sativa Japonica Group"
[GO:0009535 "chloroplast thylakoid membrane" evidence=ISS]
[GO:0015979 "photosynthesis" evidence=ISS] InterPro:IPR001344
Pfam:PF00504 GO:GO:0016021 GO:GO:0005739 GO:GO:0046872
GO:GO:0048046 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 GO:GO:0010287
GO:GO:0015979 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 KO:K08912
OMA:SSGIEFY ProtClustDB:PLN00025 eggNOG:NOG322441 EMBL:X13909
EMBL:AP003278 EMBL:AK121563 PIR:S03706 RefSeq:NP_001043493.1
UniGene:Os.79136 ProteinModelPortal:P12331 SMR:P12331 STRING:P12331
EnsemblPlants:LOC_Os01g41710.1 GeneID:4324599
KEGG:dosa:Os01t0600900-02 KEGG:dosa:Os03t0165375-00
KEGG:dosa:Os06t0484450-00 KEGG:osa:4324599 Gramene:P12331
Uniprot:P12331
Length = 261
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 92/229 (40%), Positives = 122/229 (53%)
Query: 43 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLA 99
AAS P GADR L+ S + SYL G PGDYG+D GLS DPE F + + L
Sbjct: 39 AASGSPW-YGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL- 93
Query: 100 YGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLF 158
EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P +L
Sbjct: 94 --EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNP-SLI 148
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEK 218
+ L +A G++ G LG DP Y D +
Sbjct: 149 HAQSILAIWAVQVVLM-----GAVEGYRIAGGP--LGEVVDPLYPGGSFDPLGLAD-DPE 200
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 201 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 249
>TAIR|locus:2089139 [details] [associations]
symbol:LHCB2.3 "photosystem II light harvesting complex
gene 2.3" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0030076 "light-harvesting
complex" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009637
"response to blue light" evidence=IEP;RCA] [GO:0010114 "response to
red light" evidence=IEP;RCA] [GO:0010218 "response to far red
light" evidence=IEP;RCA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0009744 "response to sucrose stimulus" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0042631 "cellular response to water deprivation" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 EMBL:CP002686 GO:GO:0009941
GO:GO:0009637 GO:GO:0010218 GO:GO:0010114 GO:GO:0009535
EMBL:AB018114 GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
HOGENOM:HOG000238032 ProtClustDB:PLN00025 UniGene:At.63397
KO:K08913 EMBL:AF134125 EMBL:AF370557 EMBL:BT006298 IPI:IPI00549108
PIR:T52322 RefSeq:NP_189406.1 UniGene:At.71997 UniGene:At.8025
ProteinModelPortal:Q9XF87 SMR:Q9XF87 STRING:Q9XF87 PRIDE:Q9XF87
EnsemblPlants:AT3G27690.1 GeneID:822391 KEGG:ath:AT3G27690
TAIR:At3g27690 InParanoid:Q9XF87 OMA:QHSSFAG PhylomeDB:Q9XF87
Genevestigator:Q9XF87 Uniprot:Q9XF87
Length = 266
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 94/245 (38%), Positives = 127/245 (51%)
Query: 33 SSRKGSFVVRAA--STPP-VKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DP 86
S+ G ++R STP + G DRP + S+ + SYL G PGDYG+D GLS DP
Sbjct: 30 SNGGGRIIMRRTVKSTPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADP 89
Query: 87 EGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPA 145
E F + + L EVI+ R+AMLGA+G PEIL K G+ E WF+ G I
Sbjct: 90 ET---FAKNREL---EVIHSRWAMLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSE 141
Query: 146 GTYNYWADPYTLFVLEMALMGFAEHRRFQDWA-NPGSMG--RQYFLGFEKYLGGSGDPAY 202
G +Y +P + + + WA MG Y +G LG DP Y
Sbjct: 142 GGLDYLGNPNLIHAQSILAI----------WACQVVLMGFIEGYRIGGGP-LGEGLDPLY 190
Query: 203 XXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
+D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+AD
Sbjct: 191 PGGAFDPLNLA-EDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIAD 249
Query: 263 PVNNN 267
PV NN
Sbjct: 250 PVANN 254
>TAIR|locus:2044988 [details] [associations]
symbol:LHCB2.2 "photosystem II light harvesting complex
gene 2.2" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0030076 "light-harvesting
complex" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] InterPro:IPR001344
Pfam:PF00504 GO:GO:0005774 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009941 GO:GO:0009535 GO:GO:0010287 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 HOGENOM:HOG000238032
ProtClustDB:PLN00025 EMBL:AC007211 EMBL:AF134123 EMBL:AY054218
EMBL:AY062563 EMBL:AY066036 EMBL:AY093372 IPI:IPI00542481
PIR:T52324 RefSeq:NP_178582.1 UniGene:At.48420 UniGene:At.63397
UniGene:At.72525 ProteinModelPortal:Q9S7J7 SMR:Q9S7J7 IntAct:Q9S7J7
STRING:Q9S7J7 PaxDb:Q9S7J7 PRIDE:Q9S7J7 ProMEX:Q9S7J7
EnsemblPlants:AT2G05070.1 GeneID:815055 KEGG:ath:AT2G05070
TAIR:At2g05070 eggNOG:NOG312402 InParanoid:Q9S7J7 KO:K08913
OMA:AFATKYT PhylomeDB:Q9S7J7 ArrayExpress:Q9S7J7
Genevestigator:Q9S7J7 Uniprot:Q9S7J7
Length = 265
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 92/231 (39%), Positives = 121/231 (52%)
Query: 45 STPP-VKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAY 100
STP + G DRP + S+ + SYL G PGDYG+D GLS DPE F + + L
Sbjct: 43 STPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPET---FAKNREL-- 97
Query: 101 GEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV 159
EVI+ R+AMLGA+G PEIL K G+ E WF+ G I G +Y +P +
Sbjct: 98 -EVIHSRWAMLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHA 154
Query: 160 LEMALMGFAEHRRFQDWA-NPGSMG--RQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKD 216
+ + WA MG Y +G LG DP Y +D
Sbjct: 155 QSILAI----------WAVQVVLMGFIEGYRIGGGP-LGEGLDPLYPGGAFDPLNLA-ED 202
Query: 217 EKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 203 PEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>TAIR|locus:2122794 [details] [associations]
symbol:LHCB5 "light harvesting complex of photosystem II
5" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009533 "chloroplast stromal thylakoid"
evidence=IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS;IMP]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009783 "photosystem II antenna complex"
evidence=IMP] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0010196
"nonphotochemical quenching" evidence=IMP] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009644 "response
to high light intensity" evidence=RCA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] [GO:0019344 "cysteine biosynthetic
process" evidence=RCA] [GO:0009517 "PSII associated
light-harvesting complex II" evidence=IDA] InterPro:IPR001344
Pfam:PF00504 GO:GO:0016021 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0009637 GO:GO:0010218 GO:GO:0010114
GO:GO:0018298 GO:GO:0010287 GO:GO:0015979 EMBL:AL049488
EMBL:AL161517 GO:GO:0009522 GO:GO:0016168 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 HOGENOM:HOG000238032
EMBL:AF134129 EMBL:AF326900 EMBL:AF339718 EMBL:AF424597
EMBL:AF380631 EMBL:AY054126 EMBL:AY087939 IPI:IPI00535216
PIR:T04049 RefSeq:NP_192772.1 UniGene:At.23060
ProteinModelPortal:Q9XF89 SMR:Q9XF89 DIP:DIP-59004N STRING:Q9XF89
PaxDb:Q9XF89 PRIDE:Q9XF89 EnsemblPlants:AT4G10340.1 GeneID:826626
KEGG:ath:AT4G10340 TAIR:At4g10340 eggNOG:NOG321165
InParanoid:Q9XF89 KO:K08916 OMA:EGPVENL PhylomeDB:Q9XF89
ProtClustDB:CLSN2685679 Genevestigator:Q9XF89 GermOnline:AT4G10340
GO:GO:0009783 GO:GO:0009517 GO:GO:0010196 Uniprot:Q9XF89
Length = 280
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 89/213 (41%), Positives = 114/213 (53%)
Query: 67 YLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125
YL+G + GDYG+DP GL PE K+ A+ E+I+ R+AMLGA G I PE L K
Sbjct: 84 YLNGEVAGDYGYDPFGLGKKPENFA-----KYQAF-ELIHARWAMLGAAGFIIPEALNKY 137
Query: 126 GLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLF---VLEMALMGFAEHRRFQDWANP 179
G A+ WF+TG + G T NY+ P L V E+ L+G AE+ R +
Sbjct: 138 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITN---- 192
Query: 180 GSMGRQYFLGFEKYL--GGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 237
G L FE L GG DP KD + K+KE+KNGRLAM A
Sbjct: 193 ---G----LDFEDKLHPGGPFDPL----------GLAKDPEQGALLKVKEIKNGRLAMFA 235
Query: 238 ILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
+LG+F+Q VTG GP +NL HL+DP NN+LT
Sbjct: 236 MLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLT 268
>TAIR|locus:2162540 [details] [associations]
symbol:LHCB3 "light-harvesting chlorophyll B-binding
protein 3" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS;IMP] [GO:0016020 "membrane" evidence=IEA] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0005198 "structural
molecule activity" evidence=IDA] [GO:0009535 "chloroplast thylakoid
membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA]
InterPro:IPR001344 Pfam:PF00504 EMBL:CP002688 GO:GO:0005198
EMBL:AB010695 GO:GO:0009535 UniGene:At.49175 GO:GO:0015979
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
UniGene:At.10812 UniGene:At.32199 UniGene:At.66422
HOGENOM:HOG000238032 ProtClustDB:PLN00025 UniGene:At.70236
UniGene:At.21173 EMBL:AF134126 EMBL:AF143691 EMBL:AF361858
EMBL:AF372917 EMBL:AY057735 IPI:IPI00532626 PIR:T52318
RefSeq:NP_200238.1 ProteinModelPortal:Q9S7M0 SMR:Q9S7M0
STRING:Q9S7M0 PRIDE:Q9S7M0 EnsemblPlants:AT5G54270.1 GeneID:835515
KEGG:ath:AT5G54270 TAIR:At5g54270 InParanoid:Q9S7M0 KO:K08914
OMA:ADDPVTF PhylomeDB:Q9S7M0 Genevestigator:Q9S7M0 Uniprot:Q9S7M0
Length = 265
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 84/221 (38%), Positives = 115/221 (52%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DR + S Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+
Sbjct: 49 GPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRW 102
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFVLE-MALMG 166
AMLGA G I PE+L K + + + WF+ G I G +Y +P + +A++G
Sbjct: 103 AMLGAFGCITPEVLQKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLG 161
Query: 167 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLK 226
F G + G + G G+ Y D + + K+K
Sbjct: 162 FQVILM-------GLVEGFRINGLDGV--GEGNDLYPGGQYFDPLGLADDPVTFAELKVK 212
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
E+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>TAIR|locus:2079117 [details] [associations]
symbol:LHCA4 "light-harvesting chlorophyll-protein
complex I subunit A4" species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0016020 "membrane"
evidence=IEA;IDA] [GO:0016168 "chlorophyll binding"
evidence=ISS;NAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0019344
"cysteine biosynthetic process" evidence=RCA] [GO:0030003 "cellular
cation homeostasis" evidence=RCA] [GO:0070838 "divalent metal ion
transport" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0009941 GO:GO:0080167 GO:GO:0018298 GO:GO:0009535
GO:GO:0010287 EMBL:AL132955 EMBL:M63931 EMBL:AY093080 EMBL:BT000093
EMBL:AY086470 IPI:IPI00523187 PIR:T45707 RefSeq:NP_190331.3
UniGene:At.21346 UniGene:At.27524 UniGene:At.35504 UniGene:At.35803
UniGene:At.66361 UniGene:At.68076 UniGene:At.71101
ProteinModelPortal:P27521 SMR:P27521 STRING:P27521 PaxDb:P27521
PRIDE:P27521 EnsemblPlants:AT3G47470.1 GeneID:823901
KEGG:ath:AT3G47470 TAIR:At3g47470 eggNOG:NOG249845
HOGENOM:HOG000238033 InParanoid:P27521 KO:K08910 OMA:WFVQAEL
PhylomeDB:P27521 ProtClustDB:PLN00101 Genevestigator:P27521
GermOnline:AT3G47470 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
Uniprot:P27521
Length = 251
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 73/186 (39%), Positives = 97/186 (52%)
Query: 85 DPEGTGGFIEP-KWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIP 143
DP G E KW E++NGR+AMLG G + PE+ K G+I W+
Sbjct: 78 DPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NVPEWYD----- 129
Query: 144 PAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYX 203
AG Y+A TLFV+E L + E RR+QD NPGS+ + F++Y G+ Y
Sbjct: 130 -AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYP 186
Query: 204 XXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
E K KE+ NGRLAMLA LG+ VQ VTG GP++NLL HL+DP
Sbjct: 187 GGIFNPLNFAPTQEA-----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDP 241
Query: 264 VNNNVL 269
+N ++
Sbjct: 242 WHNTIV 247
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 70/179 (39%), Positives = 90/179 (50%)
Query: 31 TGSS----RKGSF--VVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS 84
TGSS R SF + +A T K A + W S YL GSL GD GFDPLGL+
Sbjct: 24 TGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLA 83
Query: 85 -DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIP 143
DPE KW E++NGR+AMLG G + PE+ K G+I W+
Sbjct: 84 EDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NVPEWYD----- 129
Query: 144 PAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
AG Y+A TLFV+E L + E RR+QD NPGS+ + F++Y G+ Y
Sbjct: 130 -AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGY 185
>TAIR|locus:2082717 [details] [associations]
symbol:LHCA1 "photosystem I light harvesting complex gene
1" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009768 "photosynthesis, light harvesting in photosystem I"
evidence=IMP] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009644 "response
to high light intensity" evidence=RCA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL049655
GO:GO:0046872 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 GO:GO:0010287
HOGENOM:HOG000238033 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 EMBL:M85150 EMBL:X56062
EMBL:AF324692 EMBL:AF325016 EMBL:AF326866 EMBL:AF339688
EMBL:AF361847 EMBL:AY070473 EMBL:AY094437 EMBL:BT000852
EMBL:AK317555 IPI:IPI00516813 PIR:S25435 RefSeq:NP_191049.1
UniGene:At.23982 UniGene:At.67867 PDB:2O01 PDB:2WSC PDB:2WSE
PDB:2WSF PDBsum:2O01 PDBsum:2WSC PDBsum:2WSE PDBsum:2WSF
ProteinModelPortal:Q01667 SMR:Q01667 DIP:DIP-59003N STRING:Q01667
PaxDb:Q01667 PRIDE:Q01667 ProMEX:Q01667 EnsemblPlants:AT3G54890.1
GeneID:824654 KEGG:ath:AT3G54890 TAIR:At3g54890 eggNOG:NOG263751
InParanoid:Q01667 KO:K08907 OMA:LAIEFLA PhylomeDB:Q01667
ProtClustDB:PLN00099 EvolutionaryTrace:Q01667 Genevestigator:Q01667
GO:GO:0009768 Uniprot:Q01667
Length = 241
Score = 161 (61.7 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 55/172 (31%), Positives = 74/172 (43%)
Query: 33 SSRKGSFVVRAASTPPVKQ-GADRPL--WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEG 88
SS K FV P G R W + +YLDGS PGD+GFDPLGL + P
Sbjct: 20 SSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPAN 79
Query: 89 TGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTY 148
+ E E+I+ R+AML G + PE LG + + A G G
Sbjct: 80 LERYKE------SELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA-LPGGQATYLGNP 132
Query: 149 NYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
W T+ +E + F EH+R + +P ++Y G LG S DP
Sbjct: 133 VPWGTLPTILAIEFLAIAFVEHQRSME-KDPEK--KKYPGGAFDPLGYSKDP 181
Score = 157 (60.3 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 35/79 (44%), Positives = 48/79 (60%)
Query: 191 EKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ-GLVTG 249
+KY GG+ DP KD K +++ K+KE+KNGRLA+LA +G+ VQ G
Sbjct: 165 KKYPGGAFDPL----------GYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPG 214
Query: 250 VGPYQNLLDHLADPVNNNV 268
GP +NL HLADP +NN+
Sbjct: 215 TGPLENLATHLADPWHNNI 233
>TAIR|locus:2011691 [details] [associations]
symbol:AT1G76570 species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0016020 "membrane" evidence=IEA]
[GO:0016168 "chlorophyll binding" evidence=ISS] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0009637 "response to
blue light" evidence=IEP] [GO:0010218 "response to far red light"
evidence=IEP] [GO:0010264 "myo-inositol hexakisphosphate
biosynthetic process" evidence=RCA] [GO:0015996 "chlorophyll
catabolic process" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0016020
GO:GO:0009637 GO:GO:0010218 EMBL:AC015450 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 HOGENOM:HOG000238032
IPI:IPI00528080 PIR:G96793 RefSeq:NP_177783.1 UniGene:At.34640
ProteinModelPortal:Q9C9K1 SMR:Q9C9K1 PaxDb:Q9C9K1 PRIDE:Q9C9K1
EnsemblPlants:AT1G76570.1 GeneID:843990 KEGG:ath:AT1G76570
TAIR:At1g76570 eggNOG:NOG237807 InParanoid:Q9C9K1 KO:K14172
OMA:DYGFDIA PhylomeDB:Q9C9K1 ProtClustDB:PLN00171
Genevestigator:Q9C9K1 Uniprot:Q9C9K1
Length = 327
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 87/269 (32%), Positives = 129/269 (47%)
Query: 19 RQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFAS--KQSLSYLDGSLPGDY 76
R+ L + ++ SSR S + A G +RP WF YL G LPGDY
Sbjct: 76 RRRLEEKKKEAVENSSRFKS-KAQEARNDSKWYGKERPRWFGPIPYDYPPYLTGELPGDY 134
Query: 77 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAW 136
GFD GL T F K+ + E+++ R+AML A+GA+ PE+ G + W
Sbjct: 135 GFDIAGLGKDRLT--F--DKYFNF-EILHARWAMLAALGALIPEVFDLTGTFHFAEPV-W 188
Query: 137 FQTGVIPPAG-TYNYWADP----------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQ 185
++ G G T Y P + + ++ LM E+ R+ +G
Sbjct: 189 WRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCGIEALEPLGI- 247
Query: 186 YFLGFEKYLGGS-GDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 244
Y G Y GG+ DP +D + +D K+KE+KNGRLAM+A LG++ Q
Sbjct: 248 YLPGDINYPGGTLFDPL----------NLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQ 297
Query: 245 GLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
TG GP QNL+DH++DP++NN++ L+
Sbjct: 298 AAFTGKGPVQNLVDHVSDPLHNNLIAMLQ 326
>TAIR|locus:2097608 [details] [associations]
symbol:LHCB4.2 "light harvesting complex photosystem II"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0009535 "chloroplast thylakoid
membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009637 "response to blue light" evidence=IEP;RCA] [GO:0010114
"response to red light" evidence=IEP;RCA] [GO:0010218 "response to
far red light" evidence=IEP;RCA] [GO:0009534 "chloroplast
thylakoid" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010155 "regulation of proton transport"
evidence=RCA] [GO:0015979 "photosynthesis" evidence=RCA]
[GO:0019344 "cysteine biosynthetic process" evidence=RCA]
[GO:0019684 "photosynthesis, light reaction" evidence=RCA]
[GO:0035304 "regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 GO:GO:0016021 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009941 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0018298 EMBL:AC010871
GO:GO:0009535 HOGENOM:HOG000238033 GO:GO:0009522 GO:GO:0009523
GO:GO:0016168 GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 KO:K08915
ProtClustDB:PLN00187 EMBL:AF134127 EMBL:AY065140 EMBL:AY081608
IPI:IPI00521901 IPI:IPI00542269 PIR:T52317 RefSeq:NP_187506.1
RefSeq:NP_850545.1 UniGene:At.21828 UniGene:At.22485
UniGene:At.6984 ProteinModelPortal:Q9XF88 SMR:Q9XF88 STRING:Q9XF88
PaxDb:Q9XF88 PRIDE:Q9XF88 ProMEX:Q9XF88 EnsemblPlants:AT3G08940.2
GeneID:820043 KEGG:ath:AT3G08940 TAIR:At3g08940 eggNOG:NOG330021
InParanoid:Q9XF88 OMA:TRFTAWF PhylomeDB:Q9XF88
Genevestigator:Q9XF88 GermOnline:AT3G08940 Uniprot:Q9XF88
Length = 287
Score = 138 (53.6 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 34/74 (45%), Positives = 40/74 (54%)
Query: 18 ARQILGARSAQS-PTGSSR---KGSFVVRAASTPPVKQG-ADRPLWFASKQSLSYLDGSL 72
A I+G R + SSR + F + AS K +DRPLWF +S YLDGSL
Sbjct: 10 ASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSL 69
Query: 73 PGDYGFDPLGLSDP 86
GDYGFDP GL P
Sbjct: 70 VGDYGFDPFGLGKP 83
Score = 113 (44.8 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 216 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
D +L E+K+ RLAM+ LG+ VQ TG GP N HL+DP++ ++
Sbjct: 228 DPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTII 281
Score = 76 (31.8 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 34/105 (32%), Positives = 47/105 (44%)
Query: 102 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----T 156
E+I+GR+AML +GAI E L T + W G + +Y P T
Sbjct: 137 ELIHGRWAMLATLGAITVEWL---------TGVTWQDAGKVELVDGSSYLGQPLPFSIST 187
Query: 157 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDP 200
L +E+ ++G+ E FQ A S R Y G F LG + DP
Sbjct: 188 LIWIEVLVIGYIE---FQRNAELDSEKRLYPGGKFFDPLGLASDP 229
Score = 50 (22.7 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
++ F+ E+ +GR AMLA LG +TGV
Sbjct: 130 LQRFRECELIHGRWAMLATLGAITVEWLTGV 160
>TAIR|locus:2149765 [details] [associations]
symbol:LHCB4.1 "light harvesting complex photosystem II"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009644 "response
to high light intensity" evidence=RCA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] [GO:0019684 "photosynthesis, light
reaction" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0009637 GO:GO:0010218 GO:GO:0010114 GO:GO:0018298
GO:GO:0009535 GO:GO:0010287 HOGENOM:HOG000238033 GO:GO:0009522
GO:GO:0009523 GO:GO:0016168 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 eggNOG:NOG319330 KO:K08915 EMBL:X71878
EMBL:AL161946 EMBL:AF370474 EMBL:AY048262 EMBL:AY048300
EMBL:AY057641 EMBL:AY059861 EMBL:AY081680 EMBL:AY092980
EMBL:AY133566 EMBL:BT000363 IPI:IPI00542715 PIR:S33443
RefSeq:NP_195773.1 UniGene:At.23015 UniGene:At.23659
UniGene:At.23691 UniGene:At.24017 UniGene:At.75201
ProteinModelPortal:Q07473 SMR:Q07473 IntAct:Q07473 STRING:Q07473
PaxDb:Q07473 PRIDE:Q07473 EnsemblPlants:AT5G01530.1 GeneID:830325
KEGG:ath:AT5G01530 TAIR:At5g01530 InParanoid:Q07473 OMA:PLHTTIF
PhylomeDB:Q07473 ProtClustDB:PLN00187 Genevestigator:Q07473
GermOnline:AT5G01530 Uniprot:Q07473
Length = 290
Score = 120 (47.3 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 216 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
D + +L E+K+ RLAM+A LG+ VQ TG GP N HL+DP++ ++
Sbjct: 231 DPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTII 284
Score = 118 (46.6 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 33/76 (43%), Positives = 38/76 (50%)
Query: 18 ARQILGARSAQS-PTGSSRK----GSFVVRAASTPPVKQGA--DRPLWFASKQSLSYLDG 70
A I+G R A GS R G +AA K+ DRPLW+ S +LDG
Sbjct: 11 ASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDG 70
Query: 71 SLPGDYGFDPLGLSDP 86
SL GDYGFDP GL P
Sbjct: 71 SLVGDYGFDPFGLGKP 86
Score = 75 (31.5 bits), Expect = 3.6e-18, Sum P(3) = 3.6e-18
Identities = 33/105 (31%), Positives = 48/105 (45%)
Query: 102 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----T 156
E+I+GR+AML +GA++ E L T + W G + +Y P T
Sbjct: 140 ELIHGRWAMLATLGALSVEWL---------TGVTWQDAGKVELVDGSSYLGQPLPFSIST 190
Query: 157 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDP 200
L +E+ ++G+ E FQ A S R Y G F LG + DP
Sbjct: 191 LIWIEVLVIGYIE---FQRNAELDSEKRLYPGGKFFDPLGLAADP 232
Score = 47 (21.6 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 223 FKLKEVKNGRLAMLAILGYFVQGLVTGV 250
F+ E+ +GR AMLA LG +TGV
Sbjct: 136 FRECELIHGRWAMLATLGALSVEWLTGV 163
>TAIR|locus:2036209 [details] [associations]
symbol:LHCB6 "light harvesting complex photosystem II
subunit 6" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0016020 "membrane" evidence=IEA;IDA]
[GO:0016168 "chlorophyll binding" evidence=ISS] [GO:0015979
"photosynthesis" evidence=IMP;NAS] [GO:0009783 "photosystem II
antenna complex" evidence=NAS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0010196 "nonphotochemical quenching"
evidence=IMP] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006816 "calcium ion transport" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0009651 "response to salt
stress" evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0035304 "regulation of protein dephosphorylation"
evidence=RCA] InterPro:IPR001344 Pfam:PF00504 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009941 GO:GO:0009535 GO:GO:0010287
GO:GO:0015979 EMBL:AC034256 HOGENOM:HOG000238033 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 GO:GO:0009783 GO:GO:0010196
UniGene:At.25300 EMBL:AF332425 EMBL:AY065113 EMBL:AY081644
IPI:IPI00524194 PIR:F86292 RefSeq:NP_173034.1 UniGene:At.15569
UniGene:At.72611 UniGene:At.74824 UniGene:At.74983
ProteinModelPortal:Q9LMQ2 SMR:Q9LMQ2 STRING:Q9LMQ2 PaxDb:Q9LMQ2
PRIDE:Q9LMQ2 DNASU:838151 EnsemblPlants:AT1G15820.1 GeneID:838151
KEGG:ath:AT1G15820 TAIR:At1g15820 eggNOG:NOG277110
InParanoid:Q9LMQ2 KO:K08917 OMA:SWIPAFK PhylomeDB:Q9LMQ2
ProtClustDB:PLN00170 ArrayExpress:Q9LMQ2 Genevestigator:Q9LMQ2
Uniprot:Q9LMQ2
Length = 258
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 69/229 (30%), Positives = 105/229 (45%)
Query: 31 TGSSRKG--SFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPE 87
TG+ R G + +V AA+ P K + +LDGSLPGD+GFDPLGL DP
Sbjct: 34 TGAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDP- 92
Query: 88 GTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-G 146
F+ KW E+I+GR+AM +G +G+A + +AWF+ G P A
Sbjct: 93 ---AFL--KWYREAELIHGRWAMAAVLGIF----VGQAW-----SGVAWFEAGAQPDAIA 138
Query: 147 TYNYWADPYTLFVL------EMALMGFAEHRRFQDWANPGSMGRQYFLGF---EKYLGGS 197
+++ + T +L + + F + +WA P S + F + + Y GG
Sbjct: 139 PFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGR 198
Query: 198 GDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAIL-GYFVQG 245
D + ++ KL E+K+ RLAM+A+L YF G
Sbjct: 199 FFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFEAG 247
>TAIR|locus:2047751 [details] [associations]
symbol:LHCB4.3 "light harvesting complex photosystem II"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009637
"response to blue light" evidence=IEP;RCA] [GO:0010114 "response to
red light" evidence=IEP;RCA] [GO:0010218 "response to far red
light" evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 GO:GO:0016021 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 HOGENOM:HOG000238033
GO:GO:0009522 GO:GO:0009523 GO:GO:0016168 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 eggNOG:NOG319330 KO:K08915
OMA:TTLIWIE ProtClustDB:PLN00187 EMBL:AF134128 EMBL:AY070392
EMBL:AY096735 EMBL:AY088398 IPI:IPI00538445 PIR:T52316
RefSeq:NP_181539.1 UniGene:At.24469 ProteinModelPortal:Q9S7W1
SMR:Q9S7W1 PaxDb:Q9S7W1 PRIDE:Q9S7W1 EnsemblPlants:AT2G40100.1
GeneID:818599 KEGG:ath:AT2G40100 TAIR:At2g40100 InParanoid:Q9S7W1
PhylomeDB:Q9S7W1 Genevestigator:Q9S7W1 GermOnline:AT2G40100
Uniprot:Q9S7W1
Length = 276
Score = 102 (41.0 bits), Expect = 8.8e-14, Sum P(3) = 8.8e-14
Identities = 32/80 (40%), Positives = 39/80 (48%)
Query: 18 ARQILGARSAQSP---TG--SSRKG-SFVVRAASTPP-----VKQGADRPLWFASKQSLS 66
A I G R Q P TG +R G SF + + PP V+ DR +WF
Sbjct: 9 ASGIFGIR-IQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPE 67
Query: 67 YLDGSLPGDYGFDPLGLSDP 86
+LDGS+ GD GFDP GL P
Sbjct: 68 WLDGSMIGDRGFDPFGLGKP 87
Score = 94 (38.1 bits), Expect = 8.8e-14, Sum P(3) = 8.8e-14
Identities = 34/104 (32%), Positives = 51/104 (49%)
Query: 102 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----T 156
E+I+GR+AMLG +GAIA E L T +AW G + +Y P T
Sbjct: 141 ELIHGRWAMLGTLGAIAVEAL---------TGIAWQDAGKVELVEGSSYLGQPLPFSLTT 191
Query: 157 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
L +E+ ++G+ E +R + +P R Y G+ LG + DP
Sbjct: 192 LIWIEVLVVGYIEFQRNSE-LDPEK--RIYPGGYFDPLGLAADP 232
Score = 78 (32.5 bits), Expect = 8.8e-14, Sum P(3) = 8.8e-14
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 216 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252
D + + KL E+K+ RLAM+A L + +Q TG GP
Sbjct: 231 DPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGP 267
Score = 45 (20.9 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 223 FKLKEVKNGRLAMLAILGYFVQGLVTGV 250
F+ E+ +GR AML LG +TG+
Sbjct: 137 FRECELIHGRWAMLGTLGAIAVEALTGI 164
>UNIPROTKB|Q93WD2 [details] [associations]
symbol:Lhcb4 "Chlorophyll a-b binding protein CP29"
species:3055 "Chlamydomonas reinhardtii" [GO:0009503 "thylakoid
light-harvesting complex" evidence=IDA] [GO:0009765
"photosynthesis, light harvesting" evidence=NAS] [GO:0016168
"chlorophyll binding" evidence=NAS] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 GO:GO:0046872 GO:GO:0009941 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0018298 GO:GO:0010287
GO:GO:0009522 GO:GO:0009523 GO:GO:0016168 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 EMBL:AB051207 EMBL:AB051211
EMBL:AY171230 RefSeq:XP_001697193.1 UniGene:Cre.4370
ProteinModelPortal:Q93WD2 DIP:DIP-48401N STRING:Q93WD2 PRIDE:Q93WD2
GeneID:5722671 KEGG:cre:CHLREDRAFT_184810 eggNOG:NOG319330
KO:K08915 OMA:TTLIWIE ProtClustDB:CLSN2922608
BioCyc:MetaCyc:CHLREDRAFT_184810-MONOMER GO:GO:0009503
Uniprot:Q93WD2
Length = 280
Score = 101 (40.6 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 57 LWFASKQSLSYLDGSLPGDYGFDPLGLSDP 86
LW + +LDGSLPGD GFDPLGLS P
Sbjct: 52 LWLPNTTRPEWLDGSLPGDRGFDPLGLSKP 81
Score = 90 (36.7 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 215 KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNN 266
+DE+ K E+K+ RLAM++ GY VQ L TG G +L AD +NN
Sbjct: 226 EDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAK-FADGLNN 276
Score = 70 (29.7 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 102 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADPYT---L 157
E+I+GR+AML +GA+ E T ++W + G + G +Y + P++ L
Sbjct: 137 ELIHGRWAMLACLGALVAEAT---------TGVSWVEAGKVELDGASYAGLSLPFSITQL 187
Query: 158 FVLEMALMGFAEHRRFQDWANP 179
+E+ L+G AE R + NP
Sbjct: 188 IWIEVILVGGAEFYRNSE-TNP 208
Score = 54 (24.1 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 223 FKLKEVKNGRLAMLAILGYFVQGLVTGV 250
F+ E+ +GR AMLA LG V TGV
Sbjct: 133 FRECELIHGRWAMLACLGALVAEATTGV 160
>TAIR|locus:2146544 [details] [associations]
symbol:AT5G28450 species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0016020 "membrane" evidence=IEA]
[GO:0016168 "chlorophyll binding" evidence=ISS] [GO:0030076
"light-harvesting complex" evidence=ISS] InterPro:IPR001344
Pfam:PF00504 EMBL:CP002688 GO:GO:0009507 GO:GO:0016020
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
IPI:IPI00523588 RefSeq:NP_198197.1 UniGene:At.46743
UniGene:At.55066 ProteinModelPortal:F4K8I1 SMR:F4K8I1 DNASU:832932
EnsemblPlants:AT5G28450.1 GeneID:832932 KEGG:ath:AT5G28450
KO:K08908 PhylomeDB:F4K8I1 Uniprot:F4K8I1
Length = 173
Score = 138 (53.6 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
+K+ + KE+KNGRLAMLA++G + Q + TG GP NL HLADP
Sbjct: 118 IKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 161
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.138 0.427 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 275 249 0.00080 114 3 11 22 0.47 33
32 0.46 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 589 (63 KB)
Total size of DFA: 189 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.34u 0.11s 20.45t Elapsed: 00:00:01
Total cpu time: 20.35u 0.11s 20.46t Elapsed: 00:00:01
Start: Sat May 11 02:28:40 2013 End: Sat May 11 02:28:41 2013