BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023899
(275 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust.
Identities = 243/276 (88%), Positives = 254/276 (92%), Gaps = 1/276 (0%)
Query: 1 MATQALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
MA QALVSSS LT S E ARQ LG RS QSP G SRK SF+V+AA+TPPVKQG+DRPLWF
Sbjct: 1 MAAQALVSSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWF 60
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGE+INGRYAMLGAVGAIAP
Sbjct: 61 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAP 120
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
EILGKAGLIPQETAL WF+TGV PPAGTYNYWAD YTLFV EMALMGFAEHRRFQDWA P
Sbjct: 121 EILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKP 180
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
GSMG+QYFLG EK LGGSG+PAYPGGP FNPLG GKDEKS+KD KLKEVKNGRLAMLAIL
Sbjct: 181 GSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAIL 240
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
GYFVQ LVTGVGPYQNLLDHLADPV+NN+LTSLKFH
Sbjct: 241 GYFVQALVTGVGPYQNLLDHLADPVHNNILTSLKFH 276
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 242/276 (87%), Positives = 253/276 (91%), Gaps = 1/276 (0%)
Query: 1 MATQALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
MA QALVSSS LT S E RQ LG RS QSP G SRK SF+V+AA+TPPVKQG+DRPLWF
Sbjct: 1 MAAQALVSSSSLTFSAEATRQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWF 60
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGE+INGRYAMLGAVGAIAP
Sbjct: 61 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAP 120
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
EILGKAGLIPQETAL WF+TGV PPAGTYNYWAD YTLFV EMALMGFAEHRRFQDWA P
Sbjct: 121 EILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKP 180
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
GSMG+QYFLG EK LGGSG+PAYPGGP FNPLG GKDEKS+KD KLKEVKNGRLAMLAIL
Sbjct: 181 GSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAIL 240
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
GYFVQ LVTGVGPYQNLLDHLADPV+NN+LTSLKFH
Sbjct: 241 GYFVQALVTGVGPYQNLLDHLADPVHNNILTSLKFH 276
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 242/276 (87%), Positives = 253/276 (91%), Gaps = 1/276 (0%)
Query: 1 MATQALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
MA QALVSSS LT S E ARQ LG RS QSP G SRK SF+V+AA+TPPVKQG+DRPLWF
Sbjct: 1 MAAQALVSSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWF 60
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGE+INGRYAMLGAVGAIAP
Sbjct: 61 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAP 120
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
EILGKAGLIPQETAL WF+TGV PPAGTYNYWAD YTLFV EMALMGFAEHRRFQDWA P
Sbjct: 121 EILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKP 180
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
GSMG+QYFLG EK LGGSG+PAYPGGP FNPLG GKDEKS+KD KLKEVKNGRLAMLAIL
Sbjct: 181 GSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAIL 240
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
GYFVQ LVTGVGPYQNLLDHL DPV+NN+LTSLKFH
Sbjct: 241 GYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKFH 276
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 242/276 (87%), Positives = 253/276 (91%), Gaps = 1/276 (0%)
Query: 1 MATQALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
MA QALVSSS LT S E ARQ LG RS QSP G SRK SF+V+AA+TPPVKQG+DRPLWF
Sbjct: 1 MAAQALVSSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWF 60
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGE+INGRYAMLGAVGAIAP
Sbjct: 61 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAP 120
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
EILGKAGLIPQETAL WF+TG IPPAGTYNYWAD YTLFV EMALMGFAEHRRFQDWA P
Sbjct: 121 EILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKP 180
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
GSMG+QYFLG EK LGGSG+PAYPGGP FNPLG GKDEKS+KD KLKEVKNGRLAMLAIL
Sbjct: 181 GSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAIL 240
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
GYFVQ LVTGVGPYQNLLDHL DPV+NN+LTSLKFH
Sbjct: 241 GYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKFH 276
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/276 (86%), Positives = 252/276 (91%), Gaps = 1/276 (0%)
Query: 1 MATQALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
MA QALVSSS LT S E RQ LG RS QSP G SRK SF+V+AA+ PPVKQG+DRPLWF
Sbjct: 1 MAAQALVSSSSLTFSAEATRQSLGPRSLQSPFGFSRKASFLVKAAAIPPVKQGSDRPLWF 60
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGE+INGRYAMLGAVGAIAP
Sbjct: 61 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAP 120
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
EILGKAGLIPQETAL WF+TGV PPAGTYNYWAD YTLFV EMALMGFAEHRRFQDWA P
Sbjct: 121 EILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKP 180
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
GSMG+QYFLG EK LGGSG+PAYPGGP FNPLG GKDEKS+KD KLKEVKNGRLAMLAIL
Sbjct: 181 GSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAIL 240
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
GYFV+ LVTGVGPYQNLLDHLADPV+NN+LTSLKFH
Sbjct: 241 GYFVRALVTGVGPYQNLLDHLADPVHNNILTSLKFH 276
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 244/276 (88%), Positives = 256/276 (92%), Gaps = 4/276 (1%)
Query: 1 MATQALVSSSLTSS-VETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
MATQAL+SSS S+ E ARQI+G+R +QS T RK SFVVRAASTPPVKQGA+R LWF
Sbjct: 1 MATQALISSSSISTSAEAARQIIGSRISQSVT---RKASFVVRAASTPPVKQGANRQLWF 57
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
ASKQSLSYLDGSLPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAP
Sbjct: 58 ASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAP 117
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
EILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA P
Sbjct: 118 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKP 177
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
GSMG+QYFLG EK LGGSGDPAYPGGPLFNPLG GKDEKSMK+ KLKE+KNGRLAMLAIL
Sbjct: 178 GSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAIL 237
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
GYF+Q LVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 238 GYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 243/276 (88%), Positives = 255/276 (92%), Gaps = 4/276 (1%)
Query: 1 MATQALVSSSLTSS-VETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
MATQAL+SSS S+ E ARQI+G+R +QS T RK SFVVRAASTPPVKQGA+R LWF
Sbjct: 1 MATQALISSSSISTSAEAARQIIGSRISQSVT---RKASFVVRAASTPPVKQGANRQLWF 57
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
ASKQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAP
Sbjct: 58 ASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAP 117
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
EILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA P
Sbjct: 118 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKP 177
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
GSMG+QYFLG EK LGGSGDPAYPGGPLFNPLG GKDEKSMK+ KLKE+KNGRLAMLAIL
Sbjct: 178 GSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAIL 237
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
GYF+Q LVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 238 GYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/275 (90%), Positives = 261/275 (94%), Gaps = 1/275 (0%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA QALVSSSLTSSVETAR++LGAR QSP SSRK SFVVRAASTPPVKQG +R LWFA
Sbjct: 1 MAAQALVSSSLTSSVETARKVLGARPTQSPFVSSRKSSFVVRAASTPPVKQG-NRQLWFA 59
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
SKQSLSYLDGSLPGD+GFDPLGLSDPEGTGGFIEPKWLAYGE+INGRYAMLGAVGAIAPE
Sbjct: 60 SKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPE 119
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
ILGKAGLIP ETAL WF+TGVIPPAGTY+YWADPYTLFV EMALMGFAEHRRFQDWA PG
Sbjct: 120 ILGKAGLIPPETALPWFRTGVIPPAGTYSYWADPYTLFVFEMALMGFAEHRRFQDWAKPG 179
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
SMG+QYFLGFEKYLGGSG+PAYPGGPLFNPLG GKDEKS+KD KLKEVKNGRLAMLAILG
Sbjct: 180 SMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILG 239
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
YFVQGLVTGVGPYQNLLDHLADPV+NN+LTSLKFH
Sbjct: 240 YFVQGLVTGVGPYQNLLDHLADPVHNNILTSLKFH 274
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 237/277 (85%), Positives = 253/277 (91%), Gaps = 2/277 (0%)
Query: 1 MATQALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQ-GADRPLW 58
MATQALVSSS LT + E RQ GARS S GSSRKGSFVV+AAS+PPVKQ GA+R LW
Sbjct: 1 MATQALVSSSSLTFAAEAVRQSFGARSLPSSIGSSRKGSFVVKAASSPPVKQNGANRQLW 60
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
FASKQSLSYLDGSLPGD+GFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIA
Sbjct: 61 FASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIA 120
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN 178
PEILGKAGLIP ETAL WFQTGVIPPAGTYNYWAD YTLFV+EMA MGFAEHRRFQDW N
Sbjct: 121 PEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYN 180
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
PGSMG+QYFLG EK LGGSG+PAYPGGP+FNPLG GKDEKS+K+ KLKEVKNGRLAMLAI
Sbjct: 181 PGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 240
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
LGYF+Q LVTGVGPYQNLLDHLADPVNNN+LTSLKFH
Sbjct: 241 LGYFIQALVTGVGPYQNLLDHLADPVNNNILTSLKFH 277
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/275 (90%), Positives = 260/275 (94%), Gaps = 1/275 (0%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA QALVSSSLTSSVETAR++LGAR QSP SSRK SFVVRAASTPPVKQG +R LWFA
Sbjct: 1 MAAQALVSSSLTSSVETARKVLGARPTQSPFVSSRKSSFVVRAASTPPVKQG-NRQLWFA 59
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
SKQSLSYLDGSLPGD+GFDPLGLSDPEGTGGFIEPKWLAYGE+INGRYAMLGAVGAIAPE
Sbjct: 60 SKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPE 119
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
ILGKAGLIP ETAL WF+TGVIPPAGTY+YWADPYTLFV EMALMGFAEHRR QDWA PG
Sbjct: 120 ILGKAGLIPPETALPWFRTGVIPPAGTYSYWADPYTLFVFEMALMGFAEHRRLQDWAKPG 179
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
SMG+QYFLGFEKYLGGSG+PAYPGGPLFNPLG GKDEKS+KD KLKEVKNGRLAMLAILG
Sbjct: 180 SMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILG 239
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
YFVQGLVTGVGPYQNLLDHLADPV+NN+LTSLKFH
Sbjct: 240 YFVQGLVTGVGPYQNLLDHLADPVHNNILTSLKFH 274
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/273 (85%), Positives = 250/273 (91%), Gaps = 4/273 (1%)
Query: 7 VSSSLTSSVETARQILGARSAQ-SPT---GSSRKGSFVVRAASTPPVKQGADRPLWFASK 62
+ +L SS+E RQ+LG R Q +PT SSRK SFVV+AASTPPVKQGADR LWFASK
Sbjct: 3 TTQALLSSMEAGRQLLGGRPVQWTPTRSFSSSRKASFVVKAASTPPVKQGADRQLWFASK 62
Query: 63 QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIL 122
QSLSYLDGSLPGD+GFDPLGLSDPEGTGGFIEPKWLAYGE+INGRYAMLG GAIAPEIL
Sbjct: 63 QSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEIL 122
Query: 123 GKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSM 182
GK GLIP ETAL WFQTGVIPPAGTY+YWADPYTLFVLEMALMGFAEHRRFQDWA PGSM
Sbjct: 123 GKLGLIPPETALPWFQTGVIPPAGTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 182
Query: 183 GRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYF 242
G+QYFLGFEK+LGGSGDPAYPGGP+FNPLG GKDE+SMK+ KLKEVKNGRLAMLAILG+F
Sbjct: 183 GKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDERSMKELKLKEVKNGRLAMLAILGFF 242
Query: 243 VQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
+QGLVTGVGP+QNLLDHLADPVNNNVLTSLKFH
Sbjct: 243 IQGLVTGVGPFQNLLDHLADPVNNNVLTSLKFH 275
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 247/275 (89%), Positives = 256/275 (93%), Gaps = 2/275 (0%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA QALVSSSLTSSVETARQILG+R QSP S + SFVVRAASTPPVKQGADRPLWFA
Sbjct: 1 MAAQALVSSSLTSSVETARQILGSRPLQSP--SRKSSSFVVRAASTPPVKQGADRPLWFA 58
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
SKQSL+YLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGRYAMLGAVGAIAPE
Sbjct: 59 SKQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPE 118
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
ILGK GLIP ETAL WF+TGV PPAGTYNYWADPYTLFV EMALMGFAEHRRFQDWANPG
Sbjct: 119 ILGKLGLIPPETALPWFKTGVFPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPG 178
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
SMG+QYFLG EKYLGGSGDPAYPGGPLFNPLG GKDEKS+KD KLKEVKNGRLAMLAILG
Sbjct: 179 SMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILG 238
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
YF QG VTGVGP QNLLDHLADPVNNN++TSLKFH
Sbjct: 239 YFAQGPVTGVGPLQNLLDHLADPVNNNIITSLKFH 273
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/273 (85%), Positives = 250/273 (91%), Gaps = 4/273 (1%)
Query: 7 VSSSLTSSVETARQILGARSAQ-SPT---GSSRKGSFVVRAASTPPVKQGADRPLWFASK 62
+ +L SS+E RQ+LG R Q +P+ SSRK SFVV+AASTPPVKQGADR LWFASK
Sbjct: 3 TTQALLSSMEAGRQLLGGRPVQWTPSRSFSSSRKASFVVKAASTPPVKQGADRQLWFASK 62
Query: 63 QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIL 122
QSLSYLDGSLPGD+GFDPLGLSDPEGTGGFIEPKWLAYGE+INGRYAMLG GAIAPEIL
Sbjct: 63 QSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEIL 122
Query: 123 GKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSM 182
GK GLIP ETAL WFQTGVIPPAGTY+YWADPYTLFVLEMALMGFAEHRRFQDWA PGSM
Sbjct: 123 GKLGLIPPETALPWFQTGVIPPAGTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSM 182
Query: 183 GRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYF 242
G+QYFLGFEK+LGGSGDPAYPGGP+FNPLG GKDEKSMK+ KLKEVKNGRLAMLAILG+F
Sbjct: 183 GKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGFF 242
Query: 243 VQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
+QGLVTGVGP+QNLLDHLADPVNNNVLTSLKFH
Sbjct: 243 IQGLVTGVGPFQNLLDHLADPVNNNVLTSLKFH 275
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/276 (85%), Positives = 249/276 (90%), Gaps = 3/276 (1%)
Query: 1 MATQALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
MATQALVSSS +T+S E ARQILG RS QS SSRK SF VRA +TPP KQGADR LWF
Sbjct: 1 MATQALVSSSSITASAEAARQILGGRSFQS--SSSRKVSFAVRAEATPPAKQGADRQLWF 58
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP WLAYGE+INGRYAMLGAVGAIAP
Sbjct: 59 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPSWLAYGEIINGRYAMLGAVGAIAP 118
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
EILGKAGLIP ETAL WF+TGVIPPAGTY+YWADPYTLFV E+ALMGFAEHRRFQD+ P
Sbjct: 119 EILGKAGLIPPETALPWFKTGVIPPAGTYDYWADPYTLFVFELALMGFAEHRRFQDFQKP 178
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
G + +QYFLGFEKY GSG+P YPGGPLFNPLG GKDEKS+KD KLKEVKNGRLAMLAIL
Sbjct: 179 GCLSKQYFLGFEKYFEGSGNPIYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAIL 238
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
GYFVQ LVTGVGPYQNLLDHL+DPVNNN+LTSLKFH
Sbjct: 239 GYFVQALVTGVGPYQNLLDHLSDPVNNNILTSLKFH 274
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust.
Identities = 239/277 (86%), Positives = 250/277 (90%), Gaps = 4/277 (1%)
Query: 1 MATQALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQG-ADRPLW 58
MATQALVSSS LT + E RQ ARS S G SRKG +VRAA+TPPVKQG DRPLW
Sbjct: 1 MATQALVSSSSLTFAAEAVRQSFRARSLPSSVGCSRKG--LVRAAATPPVKQGGVDRPLW 58
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIA
Sbjct: 59 FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIA 118
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN 178
PE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA
Sbjct: 119 PEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAK 178
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
PGSMG+QYFLG EK GGSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVKNGRLAMLAI
Sbjct: 179 PGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 238
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
LGYF+QGLVTGVGPYQNLLDH+ADPVNNNVLTSLKFH
Sbjct: 239 LGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH 275
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/275 (85%), Positives = 251/275 (91%), Gaps = 2/275 (0%)
Query: 1 MATQALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQ-GADRPLW 58
MATQALVSSS LT + E RQ GARS S GSSRKGSFVV+AAS+PPVKQ GA+R LW
Sbjct: 1 MATQALVSSSSLTFAAEAVRQSFGARSLPSSIGSSRKGSFVVKAASSPPVKQNGANRQLW 60
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
FASKQSLSYLDGSLPGD+GFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIA
Sbjct: 61 FASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIA 120
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN 178
PEILGKAGLIP ETAL WFQTGVIPPAGTYNYWAD YTLFV+EMA MGFAEHRRFQDW N
Sbjct: 121 PEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYN 180
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
PGSMG+QYFLG EK LGGSG+PAYPGGP+FNPLG GKDEKS+K+ KLKEVKNGRLAMLAI
Sbjct: 181 PGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 240
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
LGYF+Q LVTGVGPYQNLLDHLADPVNNN+LTSLK
Sbjct: 241 LGYFIQALVTGVGPYQNLLDHLADPVNNNILTSLK 275
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/276 (82%), Positives = 246/276 (89%), Gaps = 2/276 (0%)
Query: 1 MATQALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
MATQ L+SSS LT + E RQ GARS S GSSRKGSFVV+AA+ P K GA+R LWF
Sbjct: 283 MATQVLLSSSSLTFAAEAVRQSFGARSLPSSIGSSRKGSFVVKAAA-PVKKGGANRQLWF 341
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
ASKQSLSYLDGSLPGD+GFDPLGLSDPEG GGFIEP+WLAYGE+INGR+AMLGA GAIAP
Sbjct: 342 ASKQSLSYLDGSLPGDFGFDPLGLSDPEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAP 401
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
EILGKAGLIP ETAL WFQTGVIPPAGTYNYWAD YTLFV+EMA MGFAEHRR QDW NP
Sbjct: 402 EILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRLQDWYNP 461
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
GSMG+QYFLG EK LGGSG+PAYPGGP+FNPLG GKDEKS+K+ KLKEVKNGRLAMLAIL
Sbjct: 462 GSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAIL 521
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
GYF+Q LVTGVGPYQNLLDHLADPVNNN+LTSLKFH
Sbjct: 522 GYFIQALVTGVGPYQNLLDHLADPVNNNILTSLKFH 557
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/276 (84%), Positives = 250/276 (90%), Gaps = 2/276 (0%)
Query: 1 MATQALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQ-GADRPLW 58
MATQALVSSS LT + E RQ GARS S GSSRKGSFVV+AAS+PPVKQ GA+R LW
Sbjct: 1 MATQALVSSSSLTFAAEAVRQSFGARSLPSSIGSSRKGSFVVKAASSPPVKQNGANRQLW 60
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
FASKQSLSYLDGSLPGD+GFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIA
Sbjct: 61 FASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIA 120
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN 178
PEILGKAGLIP ETAL WFQTGVIPPAGTYNYWAD YTLFV+EMA MGFAEHRRFQDW N
Sbjct: 121 PEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYN 180
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
PGSMG+QYFLG EK LGGSG+PAYPGGP+FNPLG GKDEKS+K+ KLKEVKNGRLAMLAI
Sbjct: 181 PGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 240
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKF 274
LGYF+Q LVTGVGPYQNLLDHLADPVNNN+LTSL
Sbjct: 241 LGYFIQALVTGVGPYQNLLDHLADPVNNNILTSLNL 276
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/276 (82%), Positives = 246/276 (89%), Gaps = 2/276 (0%)
Query: 1 MATQALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
MATQ L+SSS LT + E RQ GARS S GSSRKGSFVV+AA+ P K GA+R LWF
Sbjct: 299 MATQVLLSSSSLTFAAEAVRQSFGARSLPSSIGSSRKGSFVVKAAA-PVKKGGANRQLWF 357
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
ASKQSLSYLDGSLPGD+GFDPLGLSDPEG GGFIEP+WLAYGE+INGR+AMLGA GAIAP
Sbjct: 358 ASKQSLSYLDGSLPGDFGFDPLGLSDPEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAP 417
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
EILGKAGLIP ETAL WFQTGVIPPAGTYNYWAD YTLFV+EMA MGFAEHRR QDW NP
Sbjct: 418 EILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRLQDWYNP 477
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
GSMG+QYFLG EK LGGSG+PAYPGGP+FNPLG GKDEKS+K+ KLKEVKNGRLAMLAIL
Sbjct: 478 GSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAIL 537
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
GYF+Q LVTGVGPYQNLLDHLADPVNNN+LTSLKFH
Sbjct: 538 GYFIQALVTGVGPYQNLLDHLADPVNNNILTSLKFH 573
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 241/276 (87%), Positives = 253/276 (91%), Gaps = 4/276 (1%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRK-GSFVVRAASTPPVKQGADRPLWF 59
MATQALVSSSLTSSV ARQ LGAR + GSSRK SFVVRA +TPPVKQGADR LWF
Sbjct: 1 MATQALVSSSLTSSVGAARQRLGARPS---FGSSRKSASFVVRAEATPPVKQGADRQLWF 57
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
ASKQSLSYLDGSLPGD+GFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGA GAIAP
Sbjct: 58 ASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAP 117
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
EI G GLIP ETAL WF+TGVIPPAGTYNYWADPYTLFV EMALMGFAEHRRFQDWA P
Sbjct: 118 EIFGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKP 177
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
GSMG+QYFLG EK+LGGSGDPAYPGGPLFNPLG GKDEKSMK+ KLKE+KNGRLAMLAIL
Sbjct: 178 GSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAIL 237
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
GYF+QGLVTGVGPYQNLLDHL+DPVNNNVLTSLKFH
Sbjct: 238 GYFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSLKFH 273
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 247/275 (89%), Positives = 258/275 (93%), Gaps = 2/275 (0%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MATQALVSSSLTSSVETARQILGARS+ S + SFVVRA+STPPVKQGADR LWFA
Sbjct: 1 MATQALVSSSLTSSVETARQILGARSSFG--SSRKSSSFVVRASSTPPVKQGADRQLWFA 58
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
SKQSL+YLDGSLPGD+GFDPLGLSDPEGTGGFIEPKWLAYGE+INGR+AMLGA GAIAPE
Sbjct: 59 SKQSLTYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPE 118
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
ILGKAGLIP ETAL WFQTGVIPPAGTY+YWADPYTLFV EMALMGFAEHRRFQDWA PG
Sbjct: 119 ILGKAGLIPPETALPWFQTGVIPPAGTYDYWADPYTLFVFEMALMGFAEHRRFQDWAKPG 178
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
SMG+QYFLG EK+LGGSGDPAYPGGPLFNPLG GKDEKSMK+ KLKEVKNGRLAMLAILG
Sbjct: 179 SMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILG 238
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 239 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 236/275 (85%), Positives = 251/275 (91%), Gaps = 2/275 (0%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA QALVSSSLTSSV+TARQI G++ S S +K SFVV+AA+TPPVKQGA+RPLWFA
Sbjct: 1 MAAQALVSSSLTSSVQTARQIFGSKPVAS--ASQKKSSFVVKAAATPPVKQGANRPLWFA 58
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
S QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPE
Sbjct: 59 SSQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 118
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
ILGKAGLIP ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDW NPG
Sbjct: 119 ILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPG 178
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
SMG+QYFLG EK L GSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVKNGRLAMLAILG
Sbjct: 179 SMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILG 238
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
YF+QGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 239 YFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 236/275 (85%), Positives = 250/275 (90%), Gaps = 2/275 (0%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA QALVSSSLTSSV+TARQI G + A S S RK SFVV+A STPPVKQGA+RPLWFA
Sbjct: 1 MAAQALVSSSLTSSVQTARQIFGTKPAVST--SRRKSSFVVKATSTPPVKQGANRPLWFA 58
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
S QSL+YLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPE
Sbjct: 59 SSQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 118
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
ILGKAGLIP ETAL WFQTGVIPPAGTY+YWAD YTLFVLEMALMGFAEHRR QDW NPG
Sbjct: 119 ILGKAGLIPAETALPWFQTGVIPPAGTYSYWADNYTLFVLEMALMGFAEHRRLQDWYNPG 178
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
SMG+QYFLG EK GSG+PAYPGGP FNPLG GK+EKSMK+ KLKE+KNGRLAMLAILG
Sbjct: 179 SMGKQYFLGLEKGFSGSGEPAYPGGPFFNPLGFGKNEKSMKELKLKEIKNGRLAMLAILG 238
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 239 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 235/275 (85%), Positives = 250/275 (90%), Gaps = 2/275 (0%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA QALVSSSLTSSV+TARQI G++ S S +K SFVV+A +TPPVKQGA+RPLWFA
Sbjct: 1 MAAQALVSSSLTSSVQTARQIFGSKPVAS--ASQKKSSFVVKATATPPVKQGANRPLWFA 58
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
S QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPE
Sbjct: 59 SSQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 118
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
ILGKAGLIP ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDW NPG
Sbjct: 119 ILGKAGLIPPETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPG 178
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
SMG+QYFLG EK L GSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVKNGRLAMLAILG
Sbjct: 179 SMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILG 238
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
YF+QGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 239 YFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 235/275 (85%), Positives = 250/275 (90%), Gaps = 2/275 (0%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA QALVSSSLTSSV+TARQI G++ S S +K SFVV+AA+TPPVKQGA+RPLWFA
Sbjct: 1 MAAQALVSSSLTSSVQTARQIFGSKPVAS--ASQKKSSFVVKAAATPPVKQGANRPLWFA 58
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
S QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPE
Sbjct: 59 SSQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 118
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
ILGKAGLIP ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDW NPG
Sbjct: 119 ILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPG 178
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
SMG+QYFLG EK L GSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVKNGRLAMLAILG
Sbjct: 179 SMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILG 238
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
YF+QGLVTGVGPYQNLLDHLA PVNNNVLTSLKFH
Sbjct: 239 YFIQGLVTGVGPYQNLLDHLAGPVNNNVLTSLKFH 273
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust.
Identities = 234/275 (85%), Positives = 249/275 (90%), Gaps = 2/275 (0%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA QALVSSSLTSSV+TARQI G++ S S +K SFVV+AA+ PPVKQGA+RPLW A
Sbjct: 1 MAAQALVSSSLTSSVQTARQIFGSKPVAS--ASQKKSSFVVKAAAAPPVKQGANRPLWVA 58
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
S QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPE
Sbjct: 59 SSQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 118
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
ILGKAGLIP ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDW NPG
Sbjct: 119 ILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPG 178
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
SMG+QYFLG EK L GSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVKNGRLAMLAILG
Sbjct: 179 SMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILG 238
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
YF+QGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 239 YFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/275 (85%), Positives = 249/275 (90%), Gaps = 2/275 (0%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA QALVSSSLTSSV+TARQI G++ S S +K SFVV+AA+TPPVKQGA+RPLWFA
Sbjct: 1 MAAQALVSSSLTSSVQTARQIFGSKPVAS--ASQKKSSFVVKAAATPPVKQGANRPLWFA 58
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
S QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPE
Sbjct: 59 SSQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 118
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
ILGKAGLIP ETAL QTGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDW NPG
Sbjct: 119 ILGKAGLIPAETALPXXQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPG 178
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
SMG+QYFLG EK L GSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVKNGRLAMLAILG
Sbjct: 179 SMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILG 238
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
YF+QGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 239 YFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/277 (80%), Positives = 238/277 (85%), Gaps = 12/277 (4%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTG--SSRKGSFVVRAASTPPVKQGADRPLW 58
MA QAL+S RQ+LG R QS S+RK FVVRA+S+PP KQGADR LW
Sbjct: 1 MAAQALLS---------GRQLLG-RPVQSAVSRSSARKAPFVVRASSSPPAKQGADRQLW 50
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
FASKQSLSYLDG+LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA
Sbjct: 51 FASKQSLSYLDGTLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 110
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN 178
PEI GK G+IP ETAL WF+TGVIPPAGTYNYWAD YTLFV MALMGFAEHRR QDW N
Sbjct: 111 PEIFGKMGIIPPETALPWFKTGVIPPAGTYNYWADSYTLFVFNMALMGFAEHRRLQDWYN 170
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
PGSMG+QYFLG EK+L GSGDP+YPGGPLFNPLG GK EK M + KLKE+KNGRLAMLAI
Sbjct: 171 PGSMGKQYFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAI 230
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
LGYF+QGLVTGVGP+QNLLDHLADPVNNNVLTSLKFH
Sbjct: 231 LGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSLKFH 267
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/284 (76%), Positives = 243/284 (85%), Gaps = 10/284 (3%)
Query: 1 MATQALVSSSLTS---SVETARQIL-GARSAQSP---TGSSRKGSFVVR--AASTPPVKQ 51
+ +ALVS SL++ + +Q+L G ++ P + SSR+ SF VR A+S PVKQ
Sbjct: 4 ITAKALVSPSLSAIGGDIGRRQQLLLGGKALVLPPYFSQSSRRTSFTVRSQASSNKPVKQ 63
Query: 52 GADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAML 111
G DR LWFAS QSLSYLDGSLPGDYGFDPLGL DPEG GGF+EP WL YGE+INGRYAML
Sbjct: 64 G-DRQLWFASDQSLSYLDGSLPGDYGFDPLGLMDPEGPGGFMEPGWLVYGEIINGRYAML 122
Query: 112 GAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHR 171
GAVGAIAPEILGK GLIPQETAL WFQTGVIPPAGTYNYWADP+TLFVLEMALMGFAEHR
Sbjct: 123 GAVGAIAPEILGKLGLIPQETALPWFQTGVIPPAGTYNYWADPFTLFVLEMALMGFAEHR 182
Query: 172 RFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNG 231
R QD+ NPGSMG+QYFLG EK+LGGSG+PAYPGGPLFNPLG GKDEKSMK+ KLKEVKNG
Sbjct: 183 RLQDYRNPGSMGKQYFLGLEKFLGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNG 242
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
RLAMLAILGYF+QGLVTGVGP+QNLLDHLADPV+NN LT++K H
Sbjct: 243 RLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVHNNFLTNMKLH 286
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/286 (75%), Positives = 245/286 (85%), Gaps = 12/286 (4%)
Query: 1 MATQALVSSSLTSSV-ETARQ---ILGARSAQSP-----TGSSRKGSFVVR--AASTPPV 49
+ +AL+S SL+++ + AR+ +LG ++ P + S + SF VR A+S PV
Sbjct: 4 ITAKALISPSLSATGGDVARRQQLLLGGKALILPPYFNQSSESSRTSFAVRSQASSGKPV 63
Query: 50 KQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYA 109
KQG DR LWFASKQSLSYLDGSLPGDYGFDPLGL DPEG GGFIEP WLAYGE+INGRYA
Sbjct: 64 KQG-DRQLWFASKQSLSYLDGSLPGDYGFDPLGLMDPEGPGGFIEPGWLAYGEIINGRYA 122
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 169
MLGAVGAIAPEILGK GLIPQETAL WF+TGVIPPAGTY+YWADP+TLFVLEMALMGFAE
Sbjct: 123 MLGAVGAIAPEILGKLGLIPQETALPWFRTGVIPPAGTYDYWADPFTLFVLEMALMGFAE 182
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
HRR QD+ PGSM +QYFLGFEKYLGGSG+P+YPGGPLFNPLG GKDEKSMK+ KLKEVK
Sbjct: 183 HRRLQDYRYPGSMSKQYFLGFEKYLGGSGNPSYPGGPLFNPLGFGKDEKSMKELKLKEVK 242
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
NGRLAMLAI+GYF+QGLVTGVGP+QNLLDHLADPVNNN+LT+LK H
Sbjct: 243 NGRLAMLAIVGYFIQGLVTGVGPFQNLLDHLADPVNNNLLTNLKIH 288
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/278 (74%), Positives = 232/278 (83%), Gaps = 12/278 (4%)
Query: 1 MATQALVSSSLTSSVETARQILGA--RSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW 58
MA QAL+S RQ+LG +S+ S + SSRK F+VRA +TPP KQGADR LW
Sbjct: 1 MAAQALLS---------GRQLLGRPLQSSVSRSSSSRKAPFMVRAEATPPAKQGADRQLW 51
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
FASKQSLSYLDG+LPGD+GFDPLGLSDPEGTGGFIEP+WLAYGEV NGR AM+G VG +A
Sbjct: 52 FASKQSLSYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEVFNGRTAMMGVVGMVA 111
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN 178
PE+LGK GL+P ETA+ WFQTGVIPPAGTY YWADPYTLFV E+AL+GFAEHRRFQDW
Sbjct: 112 PELLGKLGLVPAETAIPWFQTGVIPPAGTYTYWADPYTLFVFELALVGFAEHRRFQDWYT 171
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEVKNGRLAMLA 237
PGSMG+QYFLG EKYL GSG+PAYPGGPLFNPLG G K E MK+ KLKE+KNGRLAMLA
Sbjct: 172 PGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKELKLKEIKNGRLAMLA 231
Query: 238 ILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
LG+ VQ L TGVGP QNLLDHLADPV+NN+LTSLKFH
Sbjct: 232 FLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSLKFH 269
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/252 (77%), Positives = 218/252 (86%), Gaps = 3/252 (1%)
Query: 25 RSAQSPTGSSR-KGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL 83
R + +P G+S + S VVRA+S PVK A+R L FAS+QSLSYLDGSLPGDYGFDPLGL
Sbjct: 30 RVSFAPIGTSNARSSIVVRASSDKPVK--ANRQLIFASEQSLSYLDGSLPGDYGFDPLGL 87
Query: 84 SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIP 143
SDP+G GGFI+P WL Y E+INGR+AMLGA GAIAPEI GK GLIPQETA+ WFQTGVIP
Sbjct: 88 SDPQGAGGFIDPNWLRYAEIINGRFAMLGAAGAIAPEIFGKIGLIPQETAIPWFQTGVIP 147
Query: 144 PAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYP 203
P G Y+YWADPYTLFVLEMALMGFAEHRR QD+ PGSMG+QYFLGFEK LGGSGDPAYP
Sbjct: 148 PLGQYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGFEKVLGGSGDPAYP 207
Query: 204 GGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
GGPLFN LG G+DEKSMKD K+KEVKNGRLAMLA+LGYF+Q + TGVGP+QNLLDHL+DP
Sbjct: 208 GGPLFNFLGFGRDEKSMKDLKVKEVKNGRLAMLAVLGYFIQAIFTGVGPFQNLLDHLSDP 267
Query: 264 VNNNVLTSLKFH 275
NNNVLT+LK H
Sbjct: 268 ANNNVLTNLKIH 279
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/278 (73%), Positives = 229/278 (82%), Gaps = 12/278 (4%)
Query: 1 MATQALVSSSLTSSVETARQILGA--RSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW 58
MA Q L+S RQ+LG +S+ S + SSRK FVVRA+S+PP KQ +R LW
Sbjct: 1 MAAQGLLS---------GRQLLGRPLQSSFSRSSSSRKSPFVVRASSSPPAKQNDNRQLW 51
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
FASKQSL+YLDG+LPGD+GFDPLGLSDPEGTGGFIEP+WLAYGE+ NGR AM+G VG IA
Sbjct: 52 FASKQSLTYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIA 111
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN 178
PE LGK GL+P ETA+ WFQ G IPPAGTY YWADPYTLFV EMAL+GFAEHRR QDW N
Sbjct: 112 PEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAEHRRLQDWYN 171
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEVKNGRLAMLA 237
PGSMG+QYFLG EKYLGGSGDPAYPGGP+FNPLG G K EK MK+ KLKE+KNGRLAMLA
Sbjct: 172 PGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEIKNGRLAMLA 231
Query: 238 ILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
LG +Q + TGVGP+QNLLDHL+DPVNNN+LTSLKFH
Sbjct: 232 FLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSLKFH 269
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/278 (72%), Positives = 229/278 (82%), Gaps = 12/278 (4%)
Query: 1 MATQALVSSSLTSSVETARQILGA--RSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW 58
MA Q L+S RQ+LG +S+ S + SSRK FVVRA+S+PP KQ +R LW
Sbjct: 1 MAAQGLLS---------GRQLLGRPLQSSFSRSSSSRKSPFVVRASSSPPAKQNDNRQLW 51
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
FASKQSL+YLDG+LPGD+GF+PLGLSDPEGTGGFIEP+WLAYGE+ NGR AM+G VG IA
Sbjct: 52 FASKQSLTYLDGTLPGDFGFNPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIA 111
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN 178
PE LGK GL+P ETA+ WFQ G IPPAGTY YWADPYTLFV EMAL+GFAEHRR QDW N
Sbjct: 112 PEALGKVGLVPPETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAEHRRLQDWYN 171
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEVKNGRLAMLA 237
PGSMG+QYFLG EKYLGGSGDPAYPGGP+FNPLG G K EK MK+ KLKE+KNGRLAMLA
Sbjct: 172 PGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEIKNGRLAMLA 231
Query: 238 ILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
LG +Q + TGVGP+QNLLDHL+DPVNNN+LTSLKFH
Sbjct: 232 FLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSLKFH 269
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/278 (72%), Positives = 228/278 (82%), Gaps = 13/278 (4%)
Query: 1 MATQALVSSSLTSSVETARQILGA--RSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW 58
MA Q L+S RQ+LG +S+ S + SSRK SF+VRA+S+PP KQG DR LW
Sbjct: 1 MAAQGLLS---------GRQLLGRPLQSSISRSSSSRKSSFIVRASSSPPAKQG-DRQLW 50
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
FA Z L+YLDG+LPGD+GFDPLGLSDPEGTGGFIEP+WLAYGE+ NGR AM+G VG IA
Sbjct: 51 FAXXZXLTYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIA 110
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN 178
PE LGK GL+P ETA+ WFQ G IPPAGTY YWADPYTLFV EMAL+GFAEHRR QDW N
Sbjct: 111 PEALGKVGLVPSETAIPWFQAGAIPPAGTYQYWADPYTLFVFEMALIGFAEHRRLQDWYN 170
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEVKNGRLAMLA 237
PGSMG+QYFLG EKYLGGSGDPAYPGGP+FNPLG G K EK MK+ KLKE+KNGRLAMLA
Sbjct: 171 PGSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEIKNGRLAMLA 230
Query: 238 ILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
LG +Q + TGVGP+QNLLDHL+DPVNNN+LTSLKFH
Sbjct: 231 FLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSLKFH 268
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/237 (77%), Positives = 203/237 (85%), Gaps = 2/237 (0%)
Query: 39 FVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWL 98
FVVRA S P + A+R LWFAS QSLSYLDG+LPGDYGFDPLGLSDP G G F+ P WL
Sbjct: 44 FVVRATSDKPATK-ANRQLWFASSQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWL 102
Query: 99 AYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLF 158
+Y E+INGRYAMLGA GAIAPEI GK G+IPQETA+ WF+TGV PPAGTYNYWADPYTLF
Sbjct: 103 SYAEIINGRYAMLGAAGAIAPEIFGKIGIIPQETAVVWFKTGVFPPAGTYNYWADPYTLF 162
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
LEMALMGFAEHRR QD+ PGSMG+QYFLGFEKYLGGSGDPAYPGG +FNP G GKDEK
Sbjct: 163 FLEMALMGFAEHRRAQDFYKPGSMGKQYFLGFEKYLGGSGDPAYPGG-IFNPFGFGKDEK 221
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
SM+ K+KEVKNGRLAMLAILGYF+Q TGVGP+QNLLDHLADP NN+LT+LK +
Sbjct: 222 SMRTLKIKEVKNGRLAMLAILGYFIQAPFTGVGPFQNLLDHLADPFANNILTNLKVY 278
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/219 (85%), Positives = 196/219 (89%), Gaps = 5/219 (2%)
Query: 57 LWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
+W S S S LPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GA
Sbjct: 5 IWRCSDSSCS-----LPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGA 59
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
IAPEILGKAGLIP ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDW
Sbjct: 60 IAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDW 119
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
NPGSMG+QYFLG EK L GSG+PAYPGGP FNPLG GKDEKS+K+ KLKEVKNGRLAML
Sbjct: 120 YNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAML 179
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
AILGYF+QGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 180 AILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 218
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/237 (77%), Positives = 203/237 (85%), Gaps = 2/237 (0%)
Query: 39 FVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWL 98
FVVRA S P + A+R LWFAS QSLSYLDG+LPGDYGFDPLGLSDP G G F+ P WL
Sbjct: 44 FVVRATSDKPATK-ANRQLWFASSQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWL 102
Query: 99 AYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLF 158
+Y E+INGRYAMLGA GAIAPEI GK G+IPQ+TA+ WF+TGV PPAGTYNYWADPYTLF
Sbjct: 103 SYAEIINGRYAMLGAAGAIAPEIFGKIGIIPQQTAVVWFKTGVFPPAGTYNYWADPYTLF 162
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
LEMALMGFAEHRR QD+ PGSMG+QYFLGFEKYLGGSGDPAYPGG +FNP G GKDEK
Sbjct: 163 FLEMALMGFAEHRRAQDYYKPGSMGKQYFLGFEKYLGGSGDPAYPGG-IFNPFGFGKDEK 221
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
SM+ K+KEVKNGRLAMLAILGYF+Q TGVGP+QNLLDHLADP NN+LT+LK +
Sbjct: 222 SMRTLKIKEVKNGRLAMLAILGYFIQAPFTGVGPFQNLLDHLADPFANNILTNLKVY 278
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/204 (87%), Positives = 188/204 (92%)
Query: 72 LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQE 131
LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEI GK G+IP E
Sbjct: 6 LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGIIPPE 65
Query: 132 TALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 191
TAL WF+TGVIPPAGTYNYWAD YTLFV MALMGFAEHRR QDW NPGSMG+QYFLG E
Sbjct: 66 TALPWFKTGVIPPAGTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQYFLGLE 125
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
K+L GSGDP+YPGGPLFNPLG GK EK M + KLKE+KNGRLAMLAILGYF+QGLVTGVG
Sbjct: 126 KFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYFIQGLVTGVG 185
Query: 252 PYQNLLDHLADPVNNNVLTSLKFH 275
P+QNLLDHLADPVNNNVLTSLKFH
Sbjct: 186 PFQNLLDHLADPVNNNVLTSLKFH 209
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/233 (75%), Positives = 203/233 (87%)
Query: 43 AASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGE 102
A PP G+ R L FASKQSLSYLDG+LPGDYGFDPLGL DPEG GGFI+P+WL Y E
Sbjct: 10 ADRMPPPPGGSKRSLIFASKQSLSYLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAE 69
Query: 103 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEM 162
+INGR+AMLGA GAIAPE+LG+ GLIPQETA+ WFQ+GVIPP G Y+YWADPYTLFVLEM
Sbjct: 70 IINGRFAMLGAAGAIAPEVLGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEM 129
Query: 163 ALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKD 222
ALMGFAEHRR QD+ PGSMG+QYFLG EK+LGGSG+PAYPGGP+FN LG GK+EK +++
Sbjct: 130 ALMGFAEHRRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQE 189
Query: 223 FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
K+KEVKNGRLAM+A+LGYF Q + TGVGP+QNLLDHLADPV+NNVLT+LK H
Sbjct: 190 LKVKEVKNGRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLTNLKIH 242
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/224 (77%), Positives = 200/224 (89%)
Query: 52 GADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAML 111
G+ R L FASKQSLSYLDG+LPGDYGFDPLGL DPEG GGFI+P+WL Y E+INGR+AML
Sbjct: 1 GSKRSLIFASKQSLSYLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAML 60
Query: 112 GAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHR 171
GA GAIAPE+LG+ GLIPQETA+ WFQ+GVIPP G Y+YWADPYTLFVLEMALMGFAEHR
Sbjct: 61 GAAGAIAPEVLGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHR 120
Query: 172 RFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNG 231
R QD+ PGSMG+QYFLG EK+LGGSG+PAYPGGP+FN LG GK+EK +++ K+KEVKNG
Sbjct: 121 RAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNG 180
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
RLAM+A+LGYF Q + TGVGP+QNLLDHLADPV+NNVLT+LK H
Sbjct: 181 RLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLTNLKIH 224
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/224 (77%), Positives = 200/224 (89%)
Query: 52 GADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAML 111
G+ R L FASKQSLSYLDG+LPGDYGFDPLGL DPEG GGFI+P+WL Y E+INGR+AML
Sbjct: 1 GSQRNLIFASKQSLSYLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAML 60
Query: 112 GAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHR 171
GA GAIAPE+LG+ GLIPQETA+ WFQ+GVIPP G Y+YWADPYTLFVLEMALMGFAEHR
Sbjct: 61 GAAGAIAPEVLGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHR 120
Query: 172 RFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNG 231
R QD+ PGSMG+QYFLG EK+LGGSG+PAYPGGP+FN LG GK+EK +++ K+KEVKNG
Sbjct: 121 RAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNG 180
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
RLAM+A+LGYF Q + TGVGP+QNLLDHLADPV+NNVLT+LK H
Sbjct: 181 RLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLTNLKIH 224
>gi|428230864|gb|AFY99054.1| chlorophyll binding protein, partial [Cyanea asplenifolia]
Length = 197
Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 175/197 (88%), Positives = 183/197 (92%)
Query: 77 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAW 136
GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPEI GK GLIP ETAL W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALPW 60
Query: 137 FQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGG 196
FQTGVIPPAG+Y YWADPYTLFV EMALMGFAEHRRFQDW NPGSMG+QYFLG EK L G
Sbjct: 61 FQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLAG 120
Query: 197 SGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 256
SG+PAYPGGP FNPLG GKDEKSMK+ KLKE+KNGRLAMLAILGYF+QGLVTGVGP+QNL
Sbjct: 121 SGNPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQNL 180
Query: 257 LDHLADPVNNNVLTSLK 273
LDHLADPVNNNVLTSLK
Sbjct: 181 LDHLADPVNNNVLTSLK 197
>gi|427338317|gb|AFY52157.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338319|gb|AFY52158.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338321|gb|AFY52159.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338323|gb|AFY52160.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338325|gb|AFY52161.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338327|gb|AFY52162.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338329|gb|AFY52163.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338331|gb|AFY52164.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338333|gb|AFY52165.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338335|gb|AFY52166.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338337|gb|AFY52167.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338339|gb|AFY52168.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338341|gb|AFY52169.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338343|gb|AFY52170.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338345|gb|AFY52171.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338347|gb|AFY52172.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338349|gb|AFY52173.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338351|gb|AFY52174.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338353|gb|AFY52175.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338355|gb|AFY52176.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338357|gb|AFY52177.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338359|gb|AFY52178.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338361|gb|AFY52179.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338363|gb|AFY52180.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338365|gb|AFY52181.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338367|gb|AFY52182.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338369|gb|AFY52183.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338371|gb|AFY52184.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338373|gb|AFY52185.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338375|gb|AFY52186.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338383|gb|AFY52190.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338385|gb|AFY52191.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338387|gb|AFY52192.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338389|gb|AFY52193.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338391|gb|AFY52194.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338393|gb|AFY52195.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338395|gb|AFY52196.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338397|gb|AFY52197.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338399|gb|AFY52198.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338401|gb|AFY52199.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338403|gb|AFY52200.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338405|gb|AFY52201.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338407|gb|AFY52202.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338409|gb|AFY52203.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338411|gb|AFY52204.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338413|gb|AFY52205.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338415|gb|AFY52206.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338417|gb|AFY52207.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338419|gb|AFY52208.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338421|gb|AFY52209.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338423|gb|AFY52210.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338425|gb|AFY52211.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338427|gb|AFY52212.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338429|gb|AFY52213.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338431|gb|AFY52214.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338433|gb|AFY52215.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338435|gb|AFY52216.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338437|gb|AFY52217.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338439|gb|AFY52218.1| chlorophyll binding protein, partial [Clermontia oblongifolia
subsp. oblongifolia]
gi|427338441|gb|AFY52219.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338443|gb|AFY52220.1| chlorophyll binding protein, partial [Clermontia peleana]
gi|427338445|gb|AFY52221.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338447|gb|AFY52222.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338449|gb|AFY52223.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338451|gb|AFY52224.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338453|gb|AFY52225.1| chlorophyll binding protein, partial [Clermontia drepanomorpha]
gi|427338455|gb|AFY52226.1| chlorophyll binding protein, partial [Clermontia lindseyana]
gi|428230858|gb|AFY99051.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|428230860|gb|AFY99052.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 197
Score = 362 bits (928), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 174/197 (88%), Positives = 181/197 (91%)
Query: 77 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAW 136
GFDPLGLSDPEGTGGFIEPKWLAYGEV NGR+AMLGAVGAIAPEI GK GLIP ETAL W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALPW 60
Query: 137 FQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGG 196
FQTGVIPPAG+Y YWADPYTLFV EMALMGFAEHRR QDW NPGSMG+QYFLG EK G
Sbjct: 61 FQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGFAG 120
Query: 197 SGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 256
SGDPAYPGGP FNPLG GKDEKSMK+ KLKE+KNGRLAMLAILGYF+QGLVTGVGP+QNL
Sbjct: 121 SGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQNL 180
Query: 257 LDHLADPVNNNVLTSLK 273
LDHLADPVNNNVLTSLK
Sbjct: 181 LDHLADPVNNNVLTSLK 197
>gi|7271947|gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type III [Alonsoa meridionalis]
Length = 193
Score = 360 bits (924), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 175/193 (90%), Positives = 183/193 (94%)
Query: 74 GDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETA 133
GD+GFDPLGLSDPEGTGGFIEPKWLAYGE+INGR+AMLGAVGAIAPEILGKAGLIP ETA
Sbjct: 1 GDFGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRFAMLGAVGAIAPEILGKAGLIPAETA 60
Query: 134 LAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKY 193
L WFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK
Sbjct: 61 LPWFQTGVIPPAGTYNYWADGYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKG 120
Query: 194 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 253
LGGSGDPAYPGGP FNPLG GKDEKSMK+ KLKEVKNGRLAMLAILGYF+QGLVTGVGP+
Sbjct: 121 LGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPF 180
Query: 254 QNLLDHLADPVNN 266
QNLLDHLADP +N
Sbjct: 181 QNLLDHLADPWHN 193
>gi|428230866|gb|AFY99055.1| chlorophyll binding protein, partial [Lobelia erinus]
Length = 197
Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 173/197 (87%), Positives = 181/197 (91%)
Query: 77 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAW 136
GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPEI GK GLIP ETAL W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALPW 60
Query: 137 FQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGG 196
FQTGVIPPAG+Y YWADPYTLFV EMALMGFAEHRR QDW NPGSMG+QYFLG EK G
Sbjct: 61 FQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGFAG 120
Query: 197 SGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 256
SGDPAYPGGP FNPLG GKDEKSMK+ KLKE+KNGRLAMLAILGYF+QGLVTGVGP+QNL
Sbjct: 121 SGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQNL 180
Query: 257 LDHLADPVNNNVLTSLK 273
LDHLADPV+NNVLTSLK
Sbjct: 181 LDHLADPVSNNVLTSLK 197
>gi|427338377|gb|AFY52187.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338379|gb|AFY52188.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338381|gb|AFY52189.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|428230862|gb|AFY99053.1| chlorophyll binding protein, partial [Clermontia fauriei]
Length = 197
Score = 360 bits (923), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 173/197 (87%), Positives = 180/197 (91%)
Query: 77 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAW 136
GFDPLGLSDPEGTGGFIEPKWLAYGEV NGR+AMLGAVGAIAPEI GK GLIP ETAL W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALPW 60
Query: 137 FQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGG 196
FQTGVIPPAG+Y YWADPYTLFV EMALMGFAEHRR QDW NPGSMG+QYFLG EK G
Sbjct: 61 FQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGFAG 120
Query: 197 SGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 256
SGDPAYPGGP FNPLG GKDE SMK+ KLKE+KNGRLAMLAILGYF+QGLVTGVGP+QNL
Sbjct: 121 SGDPAYPGGPFFNPLGFGKDETSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQNL 180
Query: 257 LDHLADPVNNNVLTSLK 273
LDHLADPVNNNVLTSLK
Sbjct: 181 LDHLADPVNNNVLTSLK 197
>gi|168046799|ref|XP_001775860.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672867|gb|EDQ59399.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 355 bits (912), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 174/227 (76%), Positives = 203/227 (89%)
Query: 49 VKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRY 108
++ G+ R L FASKQSLSYLDG+LPGDYGFDPLGL DPEG GGFI+P+WL Y E+INGR+
Sbjct: 1 IQGGSKRSLIFASKQSLSYLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRF 60
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFA 168
AMLGA GAIAPEILG+ GLIPQETA+ WFQ+GVIPP G Y+YWADPYTLFVLE+ALMGFA
Sbjct: 61 AMLGAAGAIAPEILGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLELALMGFA 120
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
EHRR QD+ PGSMG+QYFLG EK+LGGSG+PAYPGGP+FN LG GK+EK +K+ KLKE+
Sbjct: 121 EHRRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELKELKLKEI 180
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
KNGRLAM+A+LGYF+Q + TGVGP+QNLLDHLADPV+NNVLT+LK H
Sbjct: 181 KNGRLAMMAVLGYFIQAIFTGVGPFQNLLDHLADPVHNNVLTNLKIH 227
>gi|359754921|gb|AEV59650.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis splendens]
Length = 201
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 167/201 (83%), Positives = 178/201 (88%), Gaps = 3/201 (1%)
Query: 4 QALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA--DRPLWFA 60
QALVSSS LT S E +Q GARS QS SRKGSF+V+A STPPVKQGA +RPLWFA
Sbjct: 1 QALVSSSSLTFSAEAVKQSFGARSPQSSFAFSRKGSFIVKATSTPPVKQGAGANRPLWFA 60
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
S+QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPE
Sbjct: 61 SEQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 120
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
ILGKAGLIP+ETAL WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDW NPG
Sbjct: 121 ILGKAGLIPEETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPG 180
Query: 181 SMGRQYFLGFEKYLGGSGDPA 201
SMG+QYFLG EK LGGSG+PA
Sbjct: 181 SMGKQYFLGLEKGLGGSGEPA 201
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 165/278 (59%), Positives = 204/278 (73%), Gaps = 13/278 (4%)
Query: 1 MATQALVSSSLTSSVE-----TARQILGAR-SAQSPTGSSRKGSFVVRAASTPPVKQGAD 54
MAT AL S S+ + V ++ LGAR +A + +S+ FVV+A + +D
Sbjct: 23 MATAALASVSVPAVVCGKPAFAEKKFLGARVAAAARPQASKAAKFVVKA-------EKSD 75
Query: 55 RPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
R L+F+ K + SYLDGS PGD+G+DPLGL PEG GGFI+PKWLAY EVI+ RYAMLG
Sbjct: 76 RQLFFSDKAAQSYLDGSKPGDFGYDPLGLYKPEGAGGFIDPKWLAYSEVIHCRYAMLGMA 135
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQ 174
G +APEILGK GLIP ET L WF+TGVIP G Y+YWA P LF +E+ LM FAE RR+Q
Sbjct: 136 GMVAPEILGKLGLIPAETGLVWFKTGVIPSEGQYDYWASPLALFWIEVVLMQFAELRRWQ 195
Query: 175 DWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLA 234
D+ +PGS +QYFLG E++ GGSGDP+YPGG +FN LG GKDEKSM D KLKE+KNGRLA
Sbjct: 196 DYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKELKNGRLA 255
Query: 235 MLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
M+A LG+F+Q + TG GP+QNL DHLADP NNN+LT+
Sbjct: 256 MVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTF 293
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 330 bits (847), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 165/278 (59%), Positives = 204/278 (73%), Gaps = 13/278 (4%)
Query: 1 MATQALVSSSLTSSVE-----TARQILGAR-SAQSPTGSSRKGSFVVRAASTPPVKQGAD 54
MAT AL S S+ + V ++ LGAR +A + +S+ FVV+A + +D
Sbjct: 1 MATAALASVSVPAVVCGKPAFAEKKFLGARVAAAARPQASKAAKFVVKA-------EKSD 53
Query: 55 RPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
R L+F+ K + SYLDGS PGD+G+DPLGL PEG GGFI+PKWLAY EVI+ RYAMLG
Sbjct: 54 RQLFFSDKAAQSYLDGSKPGDFGYDPLGLYKPEGAGGFIDPKWLAYSEVIHCRYAMLGMA 113
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQ 174
G +APEILGK GLIP ET L WF+TGVIP G Y+YWA P LF +E+ LM FAE RR+Q
Sbjct: 114 GMVAPEILGKLGLIPAETGLVWFKTGVIPSEGQYDYWASPLALFWIEVVLMQFAELRRWQ 173
Query: 175 DWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLA 234
D+ +PGS +QYFLG E++ GGSGDP+YPGG +FN LG GKDEKSM D KLKE+KNGRLA
Sbjct: 174 DYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLKELKNGRLA 233
Query: 235 MLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
M+A LG+F+Q + TG GP+QNL DHLADP NNN+LT+
Sbjct: 234 MVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTF 271
>gi|359754927|gb|AEV59653.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis campestris subsp. johannensis]
Length = 197
Score = 330 bits (846), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 164/196 (83%), Positives = 175/196 (89%), Gaps = 2/196 (1%)
Query: 8 SSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA--DRPLWFASKQSL 65
SSSLT S E +Q GARS QS SRKGSF+V+AASTPPVKQGA +RPLWFAS+QSL
Sbjct: 2 SSSLTFSAEAVKQSFGARSPQSSFAFSRKGSFIVKAASTPPVKQGAGANRPLWFASEQSL 61
Query: 66 SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125
SYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPEILGKA
Sbjct: 62 SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKA 121
Query: 126 GLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ 185
GLIP+ETAL WFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHR QDW NPGSMG+Q
Sbjct: 122 GLIPEETALPWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRXLQDWYNPGSMGKQ 181
Query: 186 YFLGFEKYLGGSGDPA 201
YFLG EK LGGSG+PA
Sbjct: 182 YFLGLEKGLGGSGEPA 197
>gi|359754917|gb|AEV59648.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis arctobia]
Length = 198
Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 166/198 (83%), Positives = 176/198 (88%), Gaps = 3/198 (1%)
Query: 4 QALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA--DRPLWFA 60
QALVSSS LT S E +Q GARS QS SRKGSF+V+AASTPPVKQGA +RPLWFA
Sbjct: 1 QALVSSSSLTFSAEAVKQSFGARSPQSSFAFSRKGSFIVKAASTPPVKQGAGANRPLWFA 60
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
S+QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPE
Sbjct: 61 SEQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 120
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
ILGKAGLIP+ETAL WFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHR QDW NPG
Sbjct: 121 ILGKAGLIPEETALPWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRXLQDWYNPG 180
Query: 181 SMGRQYFLGFEKYLGGSG 198
SMG+QYFLG EK LGGSG
Sbjct: 181 SMGKQYFLGLEKGLGGSG 198
>gi|149392115|gb|ABR25924.1| chloroplast chlorophyll a-b binding protein 8 [Oryza sativa Indica
Group]
Length = 191
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 152/191 (79%), Positives = 167/191 (87%), Gaps = 1/191 (0%)
Query: 86 PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA 145
PEGTGGFIEP+WLAYGEV NGR AM+G VG +APE+LGK GL+P ETA+ WFQTGVIPPA
Sbjct: 1 PEGTGGFIEPRWLAYGEVFNGRTAMMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPA 60
Query: 146 GTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 205
GTY YWADPYTLFV E+AL+GFAEHRRFQDW PGSMG+QYFLG EKYL GSG+PAYPGG
Sbjct: 61 GTYTYWADPYTLFVFELALVGFAEHRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGG 120
Query: 206 PLFNPLGLG-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 264
PLFNPLG G K E MK+ KLKE+KNGRLAMLA LG+ VQ L TGVGP QNLLDHLADPV
Sbjct: 121 PLFNPLGFGTKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPV 180
Query: 265 NNNVLTSLKFH 275
+NN+LTSLKFH
Sbjct: 181 HNNILTSLKFH 191
>gi|303324980|pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 155/172 (90%), Positives = 162/172 (94%)
Query: 84 SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIP 143
SDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIAPE LGK GLIPQETALAWFQTGVIP
Sbjct: 1 SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIP 60
Query: 144 PAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYP 203
PAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK GGSG+PAYP
Sbjct: 61 PAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYP 120
Query: 204 GGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN 255
GGP FNPLG GKDEKS+K+ KLKEVKNGRLAMLAILGYF+QGLVTGVGPYQN
Sbjct: 121 GGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQN 172
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 160/265 (60%), Positives = 194/265 (73%), Gaps = 8/265 (3%)
Query: 11 LTSSVETARQILGARSAQSPTGSSRKGSFVVRA--ASTPPVKQGADRPLWFASKQSLSYL 68
L S + A AR AQ+ + V RA S V + D+ AS+ SL+YL
Sbjct: 4 LNRSAQAAFSGKAARPAQA-----NRARLVCRAEEKSIATVDRSKDQLYVGASQSSLAYL 58
Query: 69 DGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLI 128
DG+LPGD+GFDPLGL DP +GGF+EPKWL Y EVI+GR+AMLGA G IAPEILG AGLI
Sbjct: 59 DGTLPGDFGFDPLGLLDPVNSGGFVEPKWLQYSEVIHGRWAMLGAAGCIAPEILGAAGLI 118
Query: 129 PQETALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYF 187
P++T + W+++GVIPPAG+Y+ YWADPYT+F +E+ M FAE RR QD+ PGSMG+QYF
Sbjct: 119 PEKTNIVWYESGVIPPAGSYDGYWADPYTIFFIEIVAMQFAELRRLQDFRYPGSMGKQYF 178
Query: 188 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
LG EK GSGDPAYPGGP FN LGK E +MK+ KLKE+KNGRLAMLA+LGY Q +
Sbjct: 179 LGLEKIFAGSGDPAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQATL 238
Query: 248 TGVGPYQNLLDHLADPVNNNVLTSL 272
T GP+QNLLDHLADPVNNN+LT+
Sbjct: 239 TREGPFQNLLDHLADPVNNNILTNF 263
>gi|406362893|gb|AFS34654.1| chloroplast chlorophyll a-b binding protein, partial [Leymus
secalinus]
Length = 189
Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 149/189 (78%), Positives = 164/189 (86%), Gaps = 1/189 (0%)
Query: 88 GTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGT 147
GTGGFIEP+WLAYGE+ NGR AM+G VG IAPE LGK GL+P ETA+ WFQ G IPPAGT
Sbjct: 1 GTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKVGLVPPETAIPWFQAGAIPPAGT 60
Query: 148 YNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
Y YWADPYTLFV EMAL+GFAEHRR QDW NPGSMG+QYFLG EKYLGGSGDPAYPGGP+
Sbjct: 61 YQYWADPYTLFVFEMALIGFAEHRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPI 120
Query: 208 FNPLGLG-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNN 266
FNPLG G K EK MK+ KLKE+KNGRLAMLA LG +Q + TGVGP+QNLLDHL+DPVNN
Sbjct: 121 FNPLGFGTKSEKEMKELKLKEIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNN 180
Query: 267 NVLTSLKFH 275
N+LTSLKFH
Sbjct: 181 NILTSLKFH 189
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 159/265 (60%), Positives = 192/265 (72%), Gaps = 8/265 (3%)
Query: 11 LTSSVETARQILGARSAQSPTGSSRKGSFVVRA--ASTPPVKQGADRPLWFASKQSLSYL 68
LT S + A AR A++ + V RA S V + D+ AS+ SL+YL
Sbjct: 3 LTKSAQAAFSGKVARPAKA-----NRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYL 57
Query: 69 DGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLI 128
DGSLPGD+GFDPLGL DP +GGFIEPKWL Y EVI+ R+AMLGA G IAPE+LG AGLI
Sbjct: 58 DGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGLI 117
Query: 129 PQETALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYF 187
P T + WF++GVIPPAG+YN YWADPYT+F +E+ M FAE RR QD+ PGSMG+QYF
Sbjct: 118 PDATNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQYF 177
Query: 188 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
LG E GSGD AYPGGP FN LGK E +MK+ KLKE+KNGRLAMLA+LGY Q ++
Sbjct: 178 LGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQAVM 237
Query: 248 TGVGPYQNLLDHLADPVNNNVLTSL 272
TG GP+QNL++HLADPVNNN+LT+
Sbjct: 238 TGKGPFQNLVEHLADPVNNNILTNF 262
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 159/265 (60%), Positives = 192/265 (72%), Gaps = 8/265 (3%)
Query: 11 LTSSVETARQILGARSAQSPTGSSRKGSFVVRA--ASTPPVKQGADRPLWFASKQSLSYL 68
LT S + A AR A++ + V RA S V + D+ AS+ SL+YL
Sbjct: 3 LTKSAQAAFSGKVARPAKA-----NRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYL 57
Query: 69 DGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLI 128
DGSLPGD+GFDPLGL DP +GGFIEPKWL Y EVI+ R+AMLGA G IAPE+LG AGLI
Sbjct: 58 DGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGLI 117
Query: 129 PQETALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYF 187
P T + WF++GVIPPAG+YN YWADPYT+F +E+ M FAE RR QD+ PGSMG+QYF
Sbjct: 118 PDATNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQYF 177
Query: 188 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
LG E GSGD AYPGGP FN LGK E +MK+ KLKE+KNGRLAMLA+LGY Q ++
Sbjct: 178 LGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQAVM 237
Query: 248 TGVGPYQNLLDHLADPVNNNVLTSL 272
TG GP+QNL++HLADPVNNN+LT+
Sbjct: 238 TGKGPFQNLVEHLADPVNNNILTNF 262
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 309 bits (791), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 150/243 (61%), Positives = 183/243 (75%), Gaps = 3/243 (1%)
Query: 33 SSRKGSFVVRA--ASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTG 90
+ + V RA S V + D+ AS+ SL+YLDG+LPGD+GFDPLGL DP +G
Sbjct: 7 KANRARLVCRAEEKSIAKVDRSKDQLYVGASQSSLAYLDGTLPGDFGFDPLGLLDPVNSG 66
Query: 91 GFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYN- 149
GFIEPKWL Y EVI+ R+AMLGA G IAPE+LG AGLIP T + WF++GVIPPAG+Y+
Sbjct: 67 GFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAAGLIPDATNIKWFESGVIPPAGSYDG 126
Query: 150 YWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN 209
YWADPYT+F +E+ M FAE RR QD+ PGSMG+QYFLG E GSGD AYPGGP FN
Sbjct: 127 YWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQQYFLGLEAIFKGSGDAAYPGGPFFN 186
Query: 210 PLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
LGK E +MK+ KLKE+KNGRLAMLA+LGY Q ++TG GP+QNL++HLADPVNNN+L
Sbjct: 187 LFNLGKTEAAMKELKLKEIKNGRLAMLAMLGYGAQAVLTGKGPFQNLVEHLADPVNNNIL 246
Query: 270 TSL 272
T+
Sbjct: 247 TNF 249
>gi|37780998|gb|AAP35043.1| chlorophyll a/b binding protein, partial [Vitis vinifera]
Length = 166
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/165 (90%), Positives = 154/165 (93%)
Query: 111 LGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEH 170
LGAVGAIAPEILGK GLIP ETAL WF+TGV PPAGTYNYWADPYTLFV EMALMGFAEH
Sbjct: 1 LGAVGAIAPEILGKLGLIPPETALPWFKTGVFPPAGTYNYWADPYTLFVFEMALMGFAEH 60
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
RRFQDWANPGSMG+QYFLG EKYLGGSGDPAYPGGPLFNPLG GKDEKS+KD KLKEVKN
Sbjct: 61 RRFQDWANPGSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKN 120
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
GRLAMLAILGYF QG VTGVGP QNLLDHLADPVNNN++TSLKFH
Sbjct: 121 GRLAMLAILGYFAQGPVTGVGPLQNLLDHLADPVNNNIITSLKFH 165
>gi|359754919|gb|AEV59649.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis maydelliana]
Length = 186
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 153/186 (82%), Positives = 163/186 (87%), Gaps = 2/186 (1%)
Query: 15 VETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA--DRPLWFASKQSLSYLDGSL 72
E +Q GARS QS SRKGSF+V+AASTPPVKQGA +RPLWFAS+QSLSYLDGSL
Sbjct: 1 AEAVKQSFGARSPQSSFAFSRKGSFIVKAASTPPVKQGAGANRPLWFASEQSLSYLDGSL 60
Query: 73 PGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQET 132
PGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPEILGKAGLIP+ET
Sbjct: 61 PGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAXGAIAPEILGKAGLIPEET 120
Query: 133 ALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK 192
AL WFQTGVIPPAGTYNYWAD YTLFV EMALMG AEHR QDW NPGSMG+Q FLG EK
Sbjct: 121 ALPWFQTGVIPPAGTYNYWADNYTLFVXEMALMGXAEHRXLQDWXNPGSMGKQXFLGLEK 180
Query: 193 YLGGSG 198
LGGSG
Sbjct: 181 GLGGSG 186
>gi|149242542|pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 145/165 (87%), Positives = 152/165 (92%)
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYT 156
WLAYGE+INGR+AMLGA GAIAPEILGKAGLIP ETAL WFQTGVIPPAGTY YWAD YT
Sbjct: 1 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYT 60
Query: 157 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKD 216
LFVLEMALMGFAEHRR QDW NPGSMG+QYFLG EK L GSG+PAYPGGP FNPLG GKD
Sbjct: 61 LFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKD 120
Query: 217 EKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLA 261
EKS+K+ KLKEVKNGRLAMLAILGYF+QGLVTGVGPYQNLLDHLA
Sbjct: 121 EKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
>gi|149392118|gb|ABR25925.1| chloroplast chlorophyll a-b binding protein [Oryza sativa Indica
Group]
Length = 171
Score = 283 bits (725), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 134/171 (78%), Positives = 148/171 (86%), Gaps = 1/171 (0%)
Query: 106 GRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALM 165
GR AM+G VG +APE+LGK GL+P ETA+ WFQTGVIPPAGTY YWADPYTLFV E+AL+
Sbjct: 1 GRTAMMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPAGTYTYWADPYTLFVFELALV 60
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFK 224
GFAEHRRFQDW PGSMG+QYFLG EKYL GSG+PAYPGGPLFNPLG G K E MK+ K
Sbjct: 61 GFAEHRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKELK 120
Query: 225 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
LKE+KNGRLAMLA LG+ VQ L TGVGP QNLLDHLADPV+NN+LTSLKFH
Sbjct: 121 LKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSLKFH 171
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 283 bits (723), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 146/280 (52%), Positives = 184/280 (65%), Gaps = 17/280 (6%)
Query: 3 TQALVSSSLTSSVETARQIL----GARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW 58
TQAL + + RQ++ G + +P +++ S S + G+D
Sbjct: 8 TQALQGLTTKAPKSLRRQVVVRAEGEQQPPAPAAEAKQTSVAKVDRSKDVLYVGSD---- 63
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGLSDP-----EGTGGFIEPKWLAYGEVINGRYAMLGA 113
+L YLDG+LPGDYGFDPLGL DP +G GGF+ P+WL Y EVI+ R+AMLGA
Sbjct: 64 ---AAALKYLDGTLPGDYGFDPLGLLDPTVSNGQGAGGFVNPRWLQYSEVIHARWAMLGA 120
Query: 114 VGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTY-NYWADPYTLFVLEMALMGFAEHRR 172
G IAPEILGKAG+IP ETA+ WF+TGVIPPAG Y ++WADP+TLF +E+ + FAE +R
Sbjct: 121 AGCIAPEILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWADPFTLFFIEVVAIQFAELKR 180
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 232
QD+ NPGS RQYFLG E GS +PAYPGGP FN GK E MK KL E+KNGR
Sbjct: 181 LQDYKNPGSQSRQYFLGLEGLFKGSDNPAYPGGPFFNFANFGKTEAEMKKLKLNEIKNGR 240
Query: 233 LAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LAMLA+ GY Q ++TG GP+ NLL HLADP N++T+L
Sbjct: 241 LAMLAMFGYGAQAVITGDGPFDNLLAHLADPTGANLITNL 280
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 144/268 (53%), Positives = 181/268 (67%), Gaps = 10/268 (3%)
Query: 15 VETARQILGARSAQSPTGSSRKGSFVVRA--------ASTPPVKQGADRPLWFASKQSLS 66
V T+ + R AQS + +R+ S VVR+ A V + F S Q+L
Sbjct: 3 VVTSFSGVALRPAQSVSRPARRSSVVVRSEGSEGSELAKVERVAKAGGLYQNFTSSQALG 62
Query: 67 YLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAG 126
YLDG+LPGD+GFDPLGL DPEG GGFI P+WLAY EVI+ R+AMLG G +APE+L G
Sbjct: 63 YLDGTLPGDFGFDPLGLCDPEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAPEVLATIG 122
Query: 127 LIPQETALA-WFQTGVIPPAGTYN-YWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGR 184
IP A WF++GVIPPAG Y YW D YTLF +E +M FAE +R+QD+ +PGS G+
Sbjct: 123 AIPASPEEAVWFRSGVIPPAGQYGAYWTDAYTLFWVEAIMMNFAELKRWQDYQSPGSQGK 182
Query: 185 QYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 244
QYFLG E GGSG+PAYPGG FN L LGK ++MK + E++NGRLAM+A LG F Q
Sbjct: 183 QYFLGLEAVFGGSGNPAYPGGQFFNMLNLGKTPEAMKKLQTNEIRNGRLAMIACLGCFGQ 242
Query: 245 GLVTGVGPYQNLLDHLADPVNNNVLTSL 272
++T GP+ NLLDHLADP++NNVL +L
Sbjct: 243 AVMTTKGPFANLLDHLADPISNNVLGNL 270
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 141/241 (58%), Positives = 175/241 (72%), Gaps = 8/241 (3%)
Query: 38 SFVVRAASTPPVKQGADRP---LWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTG-GFI 93
S + S V++ ADR L FAS QSLSYL G+LP DYGFDPLGL DPEG G GF+
Sbjct: 3 STTMMMKSAAHVQETADRSKDTLLFASDQSLSYLTGALPADYGFDPLGLLDPEGKGAGFV 62
Query: 94 EPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQE-TALAWFQTGVIPPAGTYN-YW 151
P WL Y EVI+ R+AMLGA G IAPEIL AG+IPQ + WF++GVIPPAG Y+ YW
Sbjct: 63 SPAWLQYSEVIHARWAMLGAAGCIAPEILATAGVIPQTPDEVIWFKSGVIPPAGVYDKYW 122
Query: 152 ADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL 211
DPY+LF +E+ L+ FAE RR+QD+ NPGS G+QYFLG E+ L GSGDP+YPGG FN
Sbjct: 123 LDPYSLFFIEVILVQFAELRRWQDFRNPGSQGKQYFLGLEEVLKGSGDPSYPGGQFFNLF 182
Query: 212 GLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
LGK + +K+ K KE+KNGRLAMLA+ GY Q ++T GP++NL DHL+DP +N+LT+
Sbjct: 183 NLGKSD--LKELKTKELKNGRLAMLAVFGYGAQAVITAEGPFKNLTDHLSDPTGHNILTN 240
Query: 272 L 272
Sbjct: 241 F 241
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 131/213 (61%), Positives = 166/213 (77%), Gaps = 3/213 (1%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
S QSLSYLDGSLPGDYGFDPLGLSDPEG GGFI P+WLAY EVI+GR+AMLG G +APE
Sbjct: 64 SDQSLSYLDGSLPGDYGFDPLGLSDPEGAGGFINPQWLAYSEVIHGRWAMLGVAGMVAPE 123
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
+LG G+IPQET L W++ G+IP GTY+YWA+P+T+F + ALM FAE RR QD+ NPG
Sbjct: 124 VLGGLGIIPQETGLVWYKAGMIPAQGTYDYWANPFTIFWINAALMNFAELRRAQDYWNPG 183
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
SMG+Q +G+EK LGGSG+PAYPGG FN +G GK + M ++KE+KNGRLAM+A
Sbjct: 184 SMGKQELIGWEKMLGGSGEPAYPGG-FFNIMGQGKSD--MAKMRVKEIKNGRLAMMACFA 240
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
Q ++TG GP +NL+DH++DP +N+L + +
Sbjct: 241 CGAQAVMTGEGPVKNLIDHVSDPFGHNLLVNFQ 273
>gi|359754923|gb|AEV59651.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis splendens]
Length = 170
Score = 276 bits (705), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 142/170 (83%), Positives = 150/170 (88%), Gaps = 3/170 (1%)
Query: 2 ATQALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA--DRPLW 58
A QALVSSS LT S E Q GARS QS SRKGSF+V+AASTPPVKQGA +RPLW
Sbjct: 1 AAQALVSSSSLTFSAEAVXQSFGARSPQSSFAFSRKGSFIVKAASTPPVKQGAGANRPLW 60
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
FAS+QSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIA
Sbjct: 61 FASEQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIA 120
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFA 168
PEILGKAGLIP+ETAL WFQTGVIPPAGTYNYWAD YTLFVLEMALM FA
Sbjct: 121 PEILGKAGLIPEETALPWFQTGVIPPAGTYNYWADNYTLFVLEMALMXFA 170
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 273 bits (697), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 133/212 (62%), Positives = 159/212 (75%), Gaps = 3/212 (1%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
S+QSLSYLDGSLPGDYGFDPLGLSDPEG GGF+ PKWLAY E+I+GR+AMLG G +APE
Sbjct: 55 SEQSLSYLDGSLPGDYGFDPLGLSDPEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPE 114
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
+LG G+IPQET L WF+ G+IP GTY+YWA P+T+F + LM AE RR QD+ NPG
Sbjct: 115 VLGGMGIIPQETGLVWFKAGMIPAQGTYDYWASPFTIFWINAFLMNIAELRRAQDYWNPG 174
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
SMG+Q F G EK LGGSGDPAYPGG FN + G EK M K KE+KNGRLAM+A G
Sbjct: 175 SMGKQDFAGLEKMLGGSGDPAYPGG-FFNFMKQG--EKDMAAMKTKEIKNGRLAMMACFG 231
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
Q +TG GP +NL+DH+ DP +N+L +
Sbjct: 232 CGAQACMTGEGPVKNLVDHVIDPFGHNLLVNF 263
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 273 bits (697), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 139/278 (50%), Positives = 183/278 (65%), Gaps = 16/278 (5%)
Query: 9 SSLTSSVETARQILGARSAQSPTGSSRKGSFVVR--------------AASTPPVKQGAD 54
+++T S+ +A AR S + + SFVVR A + D
Sbjct: 2 AAMTVSMTSAFTRGAARVTASAPKARKLRSFVVRAEGEEAPAAEEAPKAVVKAQPRSKDD 61
Query: 55 RPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
L S Q+++YLDG+LPGD+GFDPLG+SDPEG GGF+ P+WLAY EVI+GR+AMLG
Sbjct: 62 LYLMGVSDQNMAYLDGTLPGDFGFDPLGMSDPEGAGGFVNPQWLAYSEVIHGRWAMLGVA 121
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQ 174
G +APEILG+AGLIP+ T L WF +G IPP GT++YWA+P T+F + M +M FAE +R Q
Sbjct: 122 GIVAPEILGQAGLIPESTGLVWFTSGAIPPQGTFDYWANPMTIFWVNMCMMNFAEIKRGQ 181
Query: 175 DWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLA 234
D+ PGS Q +G+EK GSG+PAYPGG FN GLGKD+ M + KE+KNGRLA
Sbjct: 182 DYWYPGSQAEQPLMGWEKGFAGSGNPAYPGGKYFNFAGLGKDD--MAKMQKKEIKNGRLA 239
Query: 235 MLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
M+A LG VQ +VTG GP++N+ DH+ADP N+L +
Sbjct: 240 MMAFLGCMVQAVVTGEGPWKNICDHVADPFGANMLANF 277
>gi|226496924|ref|NP_001148598.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|195620680|gb|ACG32170.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 151
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 127/150 (84%), Positives = 136/150 (90%)
Query: 126 GLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ 185
G+IP ETAL WF+TGVIPPAGTYNYWAD YTLFV MALMGFAEHRR QDW NPGSMG+Q
Sbjct: 2 GIIPPETALPWFKTGVIPPAGTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQ 61
Query: 186 YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQG 245
YFLG EK+L GSGDP+YPGGPLFNPLG GK EK M + KLKE+KNGRLAMLAILGYF+QG
Sbjct: 62 YFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYFIQG 121
Query: 246 LVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
LVTGVGP+QNLLDHLADPVNNNVLTSLKFH
Sbjct: 122 LVTGVGPFQNLLDHLADPVNNNVLTSLKFH 151
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 270 bits (689), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 140/284 (49%), Positives = 187/284 (65%), Gaps = 18/284 (6%)
Query: 5 ALVSSSLTS--SVETARQILGARSAQSPTGSSRKGS-FVVRA-------------ASTPP 48
A+ +SS+T+ +V+ AR G+R+A + + + FV RA A
Sbjct: 3 AITTSSVTAVRAVKGARATFGSRAAFAAPSAKASKARFVCRAEGEAEAPKEEAPKAVVKK 62
Query: 49 VKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRY 108
++ D + S Q+++YLDG+LPGD+GFDPLG+SDPEG GGF+ P+WLAY EVI+GR+
Sbjct: 63 ERKKDDLYMMGVSDQNMAYLDGTLPGDFGFDPLGMSDPEGAGGFVNPQWLAYSEVIHGRW 122
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFA 168
AMLG G +APEILG G+IP+ T L WF +G IPP GT++YWA+P T+F + M +M FA
Sbjct: 123 AMLGVAGIVAPEILGGMGVIPESTGLVWFTSGAIPPQGTFDYWANPMTIFWVNMCMMNFA 182
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E +R QD+ PGS LG+EK GGSG+P YPGG FNP LGKD+ M + KEV
Sbjct: 183 EIKRGQDYWFPGSQAETPLLGWEKGFGGSGNPTYPGGKWFNPFNLGKDD--MASMQKKEV 240
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
KNGRLAM+A LG VQ VTG GP++N+ DH+ADP N+L +
Sbjct: 241 KNGRLAMMAFLGCMVQAAVTGEGPWKNICDHVADPFGANMLANF 284
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 263 bits (671), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 138/287 (48%), Positives = 184/287 (64%), Gaps = 24/287 (8%)
Query: 5 ALVSSSLTSSVETARQILG--------ARSAQSPTGSSRKGSFVVRAASTPPV------- 49
++ +S+T+S R + G AR + ++ K SF VRAA P
Sbjct: 13 SVTMASITASSVAVRAVCGRKTFLSGNARVVCAAPKTTTKRSFTVRAADEPAEAAEAAPK 72
Query: 50 -------KQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGE 102
+ D L S Q+++YLDG+LPGD+GFDPLG+SDPEG GGF+ P+WLAY E
Sbjct: 73 AVVKAAPRSRDDVYLMGVSDQNMTYLDGTLPGDFGFDPLGMSDPEGQGGFVNPQWLAYSE 132
Query: 103 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEM 162
VI+GR+AMLG G +APE+LG G+IP +T L WF++G IPP GT++YWADP T+F + M
Sbjct: 133 VIHGRWAMLGVAGVVAPEVLGGMGIIPADTGLVWFKSGAIPPQGTFDYWADPTTIFWVNM 192
Query: 163 ALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKD 222
LM FAE +R QD+ PGS G +G+EK GSG PAYPGG FN LGK + M
Sbjct: 193 VLMNFAEVKRGQDYWYPGSQGETPLMGWEKGFAGSGAPAYPGGKYFNFANLGKTD--MAK 250
Query: 223 FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+ KE+KNGRLAM+A LG VQ + TG GP++N++DH++DP NN+L
Sbjct: 251 MQKKEIKNGRLAMMAFLGIAVQAVATGEGPFKNIVDHISDPFANNML 297
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/279 (48%), Positives = 176/279 (63%), Gaps = 24/279 (8%)
Query: 13 SSVETARQILGARSAQSPTGSS--RKGSFVVRAASTPPVK-------------QGADR-- 55
+S R L R T SS ++ S +V+A P + + D
Sbjct: 4 ASTIANRAALATRVVSQVTKSSNNKRRSLIVKAEGDVPAETEKPAAAAPAKVARNTDNLA 63
Query: 56 PLWF--ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGA 113
PL+ S QSLSYLDG+LPGDYGFDPLGLSDPEG GGFI P WLAY EVI+GR+AMLG
Sbjct: 64 PLYMLGVSDQSLSYLDGTLPGDYGFDPLGLSDPEGAGGFINPGWLAYAEVIHGRWAMLGV 123
Query: 114 VGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRF 173
GA APE + G IP TA+ WF+ G+IP G+Y++WA P LF + + +M F E R
Sbjct: 124 AGATAPETM--KGFIPDSTAVVWFKNGIIPAQGSYDFWAPPTALFWVMVCMMNFVEINRL 181
Query: 174 QDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRL 233
++ANPG +Q G EK +GG+G+PAYPGG FNP+G+GK++ M K+KE+KNGRL
Sbjct: 182 TEYANPGFRTKQSLAGLEKGMGGTGNPAYPGGS-FNPMGMGKND--MDAMKVKEIKNGRL 238
Query: 234 AMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
AM+A G VQ ++TG GP +NL DH+ DP +N+LT+
Sbjct: 239 AMMAFFGIMVQAIITGEGPVKNLTDHVTDPFAHNLLTNF 277
>gi|361067651|gb|AEW08137.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160502|gb|AFG62791.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160504|gb|AFG62792.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160506|gb|AFG62793.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160508|gb|AFG62794.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
Length = 132
Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 115/131 (87%), Positives = 124/131 (94%)
Query: 145 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 204
AGTYNYWADP+TLFVLEMALMGFAEHRR QD+ NPGSMG+QYFLG EKYLGGSG+PAYPG
Sbjct: 1 AGTYNYWADPFTLFVLEMALMGFAEHRRLQDYRNPGSMGKQYFLGLEKYLGGSGNPAYPG 60
Query: 205 GPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 264
GPLFNPLG GKDEKSMK+ KLKEVKNGRLAMLAILGYF+QGLVTGVGP+QNLLDHLADP
Sbjct: 61 GPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPF 120
Query: 265 NNNVLTSLKFH 275
NNN+LT+LK H
Sbjct: 121 NNNILTNLKLH 131
>gi|359754925|gb|AEV59652.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis campestris subsp. johannensis]
Length = 144
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/144 (83%), Positives = 129/144 (89%), Gaps = 2/144 (1%)
Query: 16 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA--DRPLWFASKQSLSYLDGSLP 73
E +Q GARS QS SRKGSF+V+AASTPPVKQGA +RPLWFAS+QSLSYLDGSLP
Sbjct: 1 EAVKQSFGARSPQSSFAFSRKGSFIVKAASTPPVKQGAGANRPLWFASEQSLSYLDGSLP 60
Query: 74 GDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETA 133
GDYGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPEILGKAGLIP+ETA
Sbjct: 61 GDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETA 120
Query: 134 LAWFQTGVIPPAGTYNYWADPYTL 157
L WFQTGVIPPAGTY YWAD YTL
Sbjct: 121 LPWFQTGVIPPAGTYTYWADXYTL 144
>gi|359754913|gb|AEV59646.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis arctobia]
Length = 142
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/140 (85%), Positives = 128/140 (91%), Gaps = 2/140 (1%)
Query: 19 RQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA--DRPLWFASKQSLSYLDGSLPGDY 76
+Q GARS QS SRKGSF+V+AASTPPVKQGA +RPLWFAS+QSLSYLDGSLPGDY
Sbjct: 3 KQSFGARSPQSSFAFSRKGSFIVKAASTPPVKQGAGANRPLWFASEQSLSYLDGSLPGDY 62
Query: 77 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAW 136
GFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPEILGKAGLIP+ETAL W
Sbjct: 63 GFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETALPW 122
Query: 137 FQTGVIPPAGTYNYWADPYT 156
FQTGVIPPAGTYNYWAD YT
Sbjct: 123 FQTGVIPPAGTYNYWADNYT 142
>gi|359754915|gb|AEV59647.1| chloroplast photosystem II light harvesting complex protein type
III, partial [Oxytropis arctobia]
Length = 141
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/139 (84%), Positives = 127/139 (91%), Gaps = 2/139 (1%)
Query: 19 RQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA--DRPLWFASKQSLSYLDGSLPGDY 76
+Q GARS QS SRKGSF+V+AASTPPVKQGA +RPLWFAS+QSLSYLDGSLPGDY
Sbjct: 3 KQSFGARSPQSSFAFSRKGSFIVKAASTPPVKQGAGANRPLWFASEQSLSYLDGSLPGDY 62
Query: 77 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAW 136
GFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPEILGKAGLIP+ETAL W
Sbjct: 63 GFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPEETALPW 122
Query: 137 FQTGVIPPAGTYNYWADPY 155
FQTGVIPPAGTYNYWAD Y
Sbjct: 123 FQTGVIPPAGTYNYWADNY 141
>gi|159138869|gb|ABW89437.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 128
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/128 (86%), Positives = 116/128 (90%)
Query: 72 LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQE 131
LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPEI GK GLIP E
Sbjct: 1 LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAE 60
Query: 132 TALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 191
TAL WF+TGVIPPAGTY+YWADP+TLFV EMALMGFAEHRR QDW NPGSMG+QYFLG E
Sbjct: 61 TALPWFKTGVIPPAGTYDYWADPFTLFVFEMALMGFAEHRRLQDWYNPGSMGKQYFLGLE 120
Query: 192 KYLGGSGD 199
K GSGD
Sbjct: 121 KGFAGSGD 128
>gi|159138839|gb|ABW89422.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138841|gb|ABW89423.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138843|gb|ABW89424.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138845|gb|ABW89425.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138847|gb|ABW89426.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138849|gb|ABW89427.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138851|gb|ABW89428.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138853|gb|ABW89429.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138855|gb|ABW89430.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138857|gb|ABW89431.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138859|gb|ABW89432.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138861|gb|ABW89433.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138863|gb|ABW89434.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138865|gb|ABW89435.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138867|gb|ABW89436.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138871|gb|ABW89438.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138873|gb|ABW89439.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138875|gb|ABW89440.1| chloroplast PSI type III chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 128
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 110/128 (85%), Positives = 115/128 (89%)
Query: 72 LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQE 131
LPGDYGFDPLGL DPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPEI GK GLIP E
Sbjct: 1 LPGDYGFDPLGLXDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAE 60
Query: 132 TALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 191
TAL WF+TGVIPPAGTY+YWADP+TLFV EMALMGFAEHRR QDW NPGSMG+QYFLG E
Sbjct: 61 TALPWFKTGVIPPAGTYDYWADPFTLFVFEMALMGFAEHRRLQDWYNPGSMGKQYFLGLE 120
Query: 192 KYLGGSGD 199
K GSGD
Sbjct: 121 KGFAGSGD 128
>gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina]
Length = 350
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 123/240 (51%), Positives = 161/240 (67%), Gaps = 16/240 (6%)
Query: 49 VKQGADRPLWFAS-KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF---IEPKWLAYGEVI 104
++Q A R ++ S +++LSYL GSLPGD+G+DPL L+D + +WL+Y EVI
Sbjct: 109 LQQQAGRKIYPGSDERALSYLTGSLPGDFGWDPLHLADTNDQDRLNNAMSMEWLSYAEVI 168
Query: 105 NGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG---------VIPPAGT--YNYWAD 153
+GR+AMLGA GA++PE+LGKAG+IP+ET L WFQ G +P G + YW D
Sbjct: 169 HGRWAMLGAAGALSPEVLGKAGVIPKETGLTWFQAGGLDSSSNLIAVPFTGPIPFQYWTD 228
Query: 154 PYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGL 213
YTL + MGFAE RR+Q++ PGS+ +Q+FLG EK S PAYPGG FN GL
Sbjct: 229 QYTLLFTMLVAMGFAETRRWQEYKEPGSVQKQFFLGLEKLTPPSQQPAYPGGGFFNFAGL 288
Query: 214 G-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
G KDEK M + K+KE++NGRLAMLA LG+ VQ VT VGP+QNLLDH+ P N+L+ L
Sbjct: 289 GAKDEKQMFELKVKEIRNGRLAMLAFLGFMVQAEVTHVGPFQNLLDHINSPGAQNLLSRL 348
>gi|125656346|gb|ABN48563.1| chloroplast PSI type III chlorophyll a/b-binding protein [Brassica
juncea]
Length = 110
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/110 (89%), Positives = 101/110 (91%)
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
GFAEHRR QDW NPGSMG+QYFLG EK GSG+PAYPGGP FNPLG GKDEKSMK+ KL
Sbjct: 1 GFAEHRRLQDWYNPGSMGKQYFLGLEKGFAGSGNPAYPGGPFFNPLGFGKDEKSMKELKL 60
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 61 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 110
>gi|145079211|tpg|DAA05904.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Acetabularia acetabulum]
Length = 202
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 106/204 (51%), Positives = 133/204 (65%), Gaps = 12/204 (5%)
Query: 7 VSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRA---------ASTPPVKQGADRPL 57
+ +S+ S A + + +S + +R F VRA A + K G D L
Sbjct: 1 MQTSVISKSVIAPKTVTKQSHHTLRSFNRSYKFSVRAEEQSTDLALAKSERTKLGTD--L 58
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
WFAS+QSLSYLDGSL GD+GFDPLGL DPEG GG + P+WL Y E++NGR+AMLGA G I
Sbjct: 59 WFASEQSLSYLDGSLAGDFGFDPLGLLDPEGAGGLVTPEWLKYAEIMNGRWAMLGAAGCI 118
Query: 118 APEILGKAGLIPQETALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMGFAEHRRFQDW 176
APE LGK G IP+ TAL W+++GVIPPAG + YW +T+F + LM FAE RR QD+
Sbjct: 119 APEFLGKLGAIPESTALIWWKSGVIPPAGDTDIYWGSSWTVFWVNACLMNFAELRRLQDY 178
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDP 200
NPGSM +Q LG EK + GSGDP
Sbjct: 179 KNPGSMNKQGLLGIEKLMAGSGDP 202
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/223 (47%), Positives = 143/223 (64%), Gaps = 5/223 (2%)
Query: 55 RPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPE--GTGGFIEPKWLAYGEVINGRYAMLG 112
R L + SLSYLDG+LPGD+GFDPLGL DP G+ GF+ +WL E+++ R+AMLG
Sbjct: 1 RLLIMPTASSLSYLDGTLPGDFGFDPLGLFDPSSGGSAGFLSQRWLHTAELMHARWAMLG 60
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGT-YNYWADPYTLFVLEMALMGFAEHR 171
A G +APE L +IP+ T L WF+TG +P A ++Y LF ++M +MG AE
Sbjct: 61 AAGCLAPEYLAHEKVIPKATGLLWFKTGFLPQASAGFDYGLPLGVLFAVQMVMMGVAEGL 120
Query: 172 RFQDWANPGSMGRQYFLGFEKYLGGS--GDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R ++ PGS+ LG EK + + G AYPGG +FNPLGLG+ +M++ + E++
Sbjct: 121 RGAEYIAPGSLRNNKLLGLEKLIATTRAGSAAYPGGLMFNPLGLGEKPAAMREMQQAEIR 180
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+GRLAMLA LGY Q +VTG GPY N HL +P NNVL+ L
Sbjct: 181 HGRLAMLACLGYAAQAVVTGRGPYDNWNRHLENPEENNVLSLL 223
>gi|296090224|emb|CBI40043.3| unnamed protein product [Vitis vinifera]
Length = 209
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/104 (90%), Positives = 98/104 (94%)
Query: 172 RFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNG 231
RFQDWANPGSMG+QYFLG EKYLGGSGDPAYPGGPLFNPLG GKDEKS+KD KLKEVKNG
Sbjct: 105 RFQDWANPGSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNG 164
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
RLAMLAILGYF QG VTGVGP QNLLDHLADPVNNN++TSLKFH
Sbjct: 165 RLAMLAILGYFAQGPVTGVGPLQNLLDHLADPVNNNIITSLKFH 208
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/108 (87%), Positives = 100/108 (92%), Gaps = 2/108 (1%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA QALVSSSLTSSVETARQILG+R QSP S + SFVVRAASTPPVKQGADRPLWFA
Sbjct: 1 MAAQALVSSSLTSSVETARQILGSRPLQSP--SRKSSSFVVRAASTPPVKQGADRPLWFA 58
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRY 108
SKQSL+YLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+
Sbjct: 59 SKQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRF 106
>gi|159480944|ref|XP_001698542.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
gi|158282282|gb|EDP08035.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
Length = 237
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/232 (46%), Positives = 145/232 (62%), Gaps = 7/232 (3%)
Query: 48 PVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP-EGTGGFIEPKWLAYGEVING 106
P A R L S SLSYLDG+LPGD GFDPLGL DP G+ GF+ +WL EV++G
Sbjct: 1 PPPDAAGRLLILPSVSSLSYLDGTLPGDMGFDPLGLFDPTNGSAGFMSQRWLHTAEVVHG 60
Query: 107 RYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGT-YNYWADPYTLFVLEMALM 165
R+AMLGA G +APE L +IP+ T L WF+TG +PP ++Y LF+++M LM
Sbjct: 61 RWAMLGAAGCLAPEYLAHEKVIPKATGLLWFKTGFLPPVSAGFDYGLPVTALFLIQMGLM 120
Query: 166 GFAEHRRFQDWANPGSMGRQYFL--GFEKYLGGS--GDPAYPGGPLFNPLGLGKDEKS-M 220
G E R+ + +NPGS+ + + +G + G AYPGG +FNPLGLG + M
Sbjct: 121 GTVESLRWAELSNPGSLASNPLVPQPLARLIGTTRLGGGAYPGGLMFNPLGLGATRPAVM 180
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
++++ E+++GRLAM+A LGY Q +VTG GPY N + HL DP NV+ L
Sbjct: 181 REYQQSEIRHGRLAMVACLGYAAQAVVTGKGPYTNWVAHLEDPDIENVVVLL 232
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 146/233 (62%), Gaps = 21/233 (9%)
Query: 46 TPPVKQ----GADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAY 100
TP KQ RP W +YLDG+LPGD+GFDPLGL DPE KW
Sbjct: 45 TPRCKQICAAAQQRPTWLPGLDPPTYLDGTLPGDFGFDPLGLGEDPESL------KWYVQ 98
Query: 101 GEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVL 160
E+++ R+AMLG +G + ++L AG+ + WF+ G + Y + A+ TL V+
Sbjct: 99 AELVHSRFAMLGVLGILVTDLLRVAGV---NSIPIWFEAGAV----KYEF-ANTGTLVVV 150
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG+AE RR+ D+ +PGS ++ F G E LGG +P YPGGPL NPLGL KD KS
Sbjct: 151 QLLLMGYAETRRYMDFVSPGSQAKEGSFFGLEASLGGL-EPGYPGGPLLNPLGLAKDIKS 209
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+++KLKE+KNGRLAM+AILG FVQ VT VGP NL++HL++P + ++ L
Sbjct: 210 AREWKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQIL 262
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 111/266 (41%), Positives = 149/266 (56%), Gaps = 18/266 (6%)
Query: 8 SSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSY 67
SS T+++ T Q L S SR G F V + RP W Y
Sbjct: 19 SSIFTNNINT-YQTLSLNKVTSLPAKSR-GIFHSHGRRLCTVVRAQQRPTWLPGLDPPPY 76
Query: 68 LDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAG 126
LDG+L GD+GFDPLGL DPE KW E+++ R+AM G G + ++L G
Sbjct: 77 LDGTLAGDFGFDPLGLGEDPESL------KWYVQAELVHSRFAMAGVAGILFTDLLRTTG 130
Query: 127 LIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQY 186
L W++ G T +A+ TLF+++M LMGF E +R+ D+ NPGS G
Sbjct: 131 L---SNLPVWYEAG-----ATKFQFANTTTLFIVQMLLMGFVETKRYMDFKNPGSQGEAS 182
Query: 187 FLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 246
F G E L G +P YPGGP+ NPLG+ KD K+ ++KLKE+KNGRLAM+AILG FVQ
Sbjct: 183 FFGLEAALEGL-EPGYPGGPILNPLGIAKDIKNAPEWKLKEIKNGRLAMVAILGIFVQAS 241
Query: 247 VTGVGPYQNLLDHLADPVNNNVLTSL 272
VT VGP +NL++HL+DP + ++ L
Sbjct: 242 VTHVGPLENLVEHLSDPWHTTIIQIL 267
>gi|357139429|ref|XP_003571284.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Brachypodium distachyon]
Length = 115
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 88/115 (76%), Positives = 101/115 (87%), Gaps = 1/115 (0%)
Query: 162 MALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSM 220
MAL+GFAEHRR QDW NPGSMG+QYFLG EK+LGGSGDPAYPGGP+FNPLG G K +K +
Sbjct: 1 MALIGFAEHRRLQDWYNPGSMGKQYFLGLEKFLGGSGDPAYPGGPIFNPLGFGTKSDKEL 60
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
+ KLKE+KNGRLAMLA LG +Q + TGVGP+QNLLDHL+DPVNNN+LTSLKFH
Sbjct: 61 AELKLKEIKNGRLAMLAFLGMSIQAIFTGVGPFQNLLDHLSDPVNNNILTSLKFH 115
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 111/276 (40%), Positives = 154/276 (55%), Gaps = 34/276 (12%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ T L +T+ + I G QSP + VRA++ +R W
Sbjct: 13 LHTCTLSPKPVTALSRSMAAIPGHHVFQSP-----RARIAVRAST--------ERATWLP 59
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP---KWLAYGEVINGRYAMLGAVGAI 117
+LDG+LPGD+GFDPLGL + EP KW E+++ R+AM G G +
Sbjct: 60 GLDPPPHLDGTLPGDFGFDPLGLGE--------EPANLKWYVQAELVHCRFAMAGVAGIL 111
Query: 118 APEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWA 177
A +++ +G+ WF+ G T +A+ LF +++ LMGFAE +R+ D+
Sbjct: 112 ATDLIRVSGI---NNLPVWFEAG-----ATKFDFANTTALFFVQLLLMGFAETKRYMDFI 163
Query: 178 NPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
NPGS + FLG E L GS P YPGGPLFNPLGL KD ++ + KLKE+KNGRLAM+
Sbjct: 164 NPGSQAEEGTFLGIEAALAGS-QPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMV 222
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
A+LG+ VQ VT VGP NLL HL+DP N N++ +L
Sbjct: 223 AMLGFIVQASVTHVGPIDNLLTHLSDPFNKNIIHTL 258
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/276 (40%), Positives = 153/276 (55%), Gaps = 34/276 (12%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ T L +T+ + I G QSP + VRA++ +R W
Sbjct: 13 LHTCTLSPKPVTALSRSMAAIPGHHVFQSP-----RARIAVRAST--------ERATWLP 59
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP---KWLAYGEVINGRYAMLGAVGAI 117
+LDG+LPGD+GFDPLGL + EP KW E+++ R+AM G G +
Sbjct: 60 GLDPPPHLDGTLPGDFGFDPLGLGE--------EPANLKWYVQAELVHCRFAMAGVAGIL 111
Query: 118 APEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWA 177
A + + +G+ WF+ G T +A+ LF +++ LMGFAE +R+ D+
Sbjct: 112 ATDFIRVSGI---NNLPVWFEAG-----ATKFDFANTTALFFVQLLLMGFAETKRYMDFI 163
Query: 178 NPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
NPGS + FLG E L GS P YPGGPLFNPLGL KD ++ + KLKE+KNGRLAM+
Sbjct: 164 NPGSQAEEGTFLGIEAALAGS-QPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMV 222
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
A+LG+ VQ VT VGP NLL HL+DP N N++ +L
Sbjct: 223 AMLGFIVQASVTHVGPIDNLLTHLSDPFNKNIIHTL 258
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/265 (41%), Positives = 153/265 (57%), Gaps = 28/265 (10%)
Query: 19 RQILGARSAQSPT---GSSRKGSFVVRAASTPPVKQGAD----RPLWFASKQSLSYLDGS 71
R + + + +P+ G S G RA +TP +Q RP W +YLDG+
Sbjct: 14 RSLFNSNTIYNPSPYGGYSWLGPAASRAGTTPRCRQICAAMQPRPTWLPGLDPPAYLDGT 73
Query: 72 LPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGL--I 128
L GDYGFDPLGL DPE +W E+++ R+AMLG G + ++L GL I
Sbjct: 74 LAGDYGFDPLGLGEDPESL------RWYVQAELVHARFAMLGVFGILVTDLLRVTGLSKI 127
Query: 129 PQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ-YF 187
P WF+ G + Y + + TL ++++ LMGFAE +R+ D+ PGS ++ F
Sbjct: 128 P-----VWFEAGAV----KYEF-TNTQTLIIVQLLLMGFAETKRYMDFIGPGSQAKEGSF 177
Query: 188 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
G E G +P YPGGPL NPLGL KD K+ ++ KLKE+KNGRLAM+AILG FVQ V
Sbjct: 178 FGLEASFEGL-EPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQASV 236
Query: 248 TGVGPYQNLLDHLADPVNNNVLTSL 272
T VGP NL++HL++P + V+ +L
Sbjct: 237 THVGPIDNLVEHLSNPWHKTVIQTL 261
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 114/268 (42%), Positives = 151/268 (56%), Gaps = 22/268 (8%)
Query: 8 SSSLTSSVETAR-QILGARSAQSP-TGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSL 65
+S + S+V +AR L R+ ++ + KG V A T DRPLW ++
Sbjct: 19 TSKVVSNVGSARTSFLAGRALRTTQVCGAAKGDMTVSATLT---GNKTDRPLWLPGSEAP 75
Query: 66 SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125
+LDGSLPGDYGFDPL L+ G W+ E+++ R+AMLGA G PE+L K
Sbjct: 76 KWLDGSLPGDYGFDPLDLAAEPG-----RLNWMVQAELVHCRWAMLGAAGIFIPELLTKI 130
Query: 126 GLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ 185
G++ + W++ AG Y+AD TLF++E+ LM +AE RR+ D A PGS+
Sbjct: 131 GILNTPS---WYK------AGDATYFADQGTLFIVELLLMAWAESRRWADIARPGSVNTD 181
Query: 186 YFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQ 244
K G D YPGG F+PLG G E +K+ + KEVKNGRLAMLA+LG FVQ
Sbjct: 182 PIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAMLAVLGAFVQ 239
Query: 245 GLVTGVGPYQNLLDHLADPVNNNVLTSL 272
VT VGP NL HLADP + +L SL
Sbjct: 240 ANVTHVGPIDNLFAHLADPYHTTILQSL 267
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 137/229 (59%), Gaps = 17/229 (7%)
Query: 46 TPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVI 104
T V + RP W S YLDG+L GDYGFDPLGL DPE KW E++
Sbjct: 51 TRAVVRAQQRPTWLPGLDSPPYLDGTLAGDYGFDPLGLGEDPESL------KWYVQAELV 104
Query: 105 NGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMAL 164
+ R+AMLG G + ++L G+ W++ G + Y + A TL V+++
Sbjct: 105 HARFAMLGIAGILFTDLLRVTGI---RKLPVWYEAGAV----KYEF-ASTRTLLVVQLLW 156
Query: 165 MGFAEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
MG+AE RR+ D+ +PGS ++ F G E L G +P YPGGPL NP GL KD +S +D+
Sbjct: 157 MGYAETRRYMDYVSPGSQNKEGSFFGMEAALEGL-EPGYPGGPLLNPFGLAKDIRSARDW 215
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
KLKE+KNGRLAM+A+LG FVQ VT GP NLL+HL+DP + ++ +L
Sbjct: 216 KLKEIKNGRLAMVAMLGIFVQAAVTHTGPIDNLLEHLSDPWHKTIIQTL 264
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 145/261 (55%), Gaps = 21/261 (8%)
Query: 19 RQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA------DRPLWFASKQSLSYLDGSL 72
R I ++ PT SR + + PP + +R W YLDG+L
Sbjct: 10 RVIHTCSLSKPPTAFSRSTAAMPGHHVQPPRARVVARASAAERATWLPGLDPPPYLDGTL 69
Query: 73 PGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQET 132
PGDYGFDPLGL + + KW E+++ R+AM G G + +++ +G+
Sbjct: 70 PGDYGFDPLGLGEEPA-----DLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGI---SN 121
Query: 133 ALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ-YFLGFE 191
WF+ G T +A+ LF +++ LMGF E +R+ D NPGS + FLG E
Sbjct: 122 LPVWFEAG-----ATKFDFANTTALFFVQLLLMGFVETKRYMDIVNPGSQAEEGTFLGIE 176
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
L G P YPGGPLFNP+GL KD K+ + KLKE+KNGRLAM+A+LG+FVQ VT VG
Sbjct: 177 ASLEGL-QPGYPGGPLFNPMGLAKDIKNAHEVKLKEIKNGRLAMVAMLGFFVQASVTHVG 235
Query: 252 PYQNLLDHLADPVNNNVLTSL 272
P NLL HL+DP NNN++ +
Sbjct: 236 PIDNLLIHLSDPFNNNIIHAF 256
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 133/223 (59%), Gaps = 17/223 (7%)
Query: 52 GADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAM 110
G R W YLDG+LPGD+GFDPLGL +PE KW E+++ R+AM
Sbjct: 105 GTQRATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEAL------KWYVQAELVHCRFAM 158
Query: 111 LGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEH 170
G G + ++L +G WF+ G A +++ A+ LF +++ LMGFAE
Sbjct: 159 AGVAGILFTDLLRVSG---NSDLPVWFEAG----AAKFDF-ANTTALFFVQLFLMGFAET 210
Query: 171 RRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
+R+ D+ NPGS + F+G E L G P YPGGPLFNPLGL KD ++ D KLKE+K
Sbjct: 211 KRYMDFKNPGSQAEEGTFIGLEAALAGQ-QPGYPGGPLFNPLGLAKDIENAHDEKLKEIK 269
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
NGRLAM+A+LG+ VQ VT GP NLL HL+DP N N++ +
Sbjct: 270 NGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTF 312
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 144/246 (58%), Gaps = 29/246 (11%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGG 91
S + F VRA A+R W +YLDG+LPGDYGFDPLGL + PE
Sbjct: 36 ESPRARFAVRAI--------AERATWLPGLDPPAYLDGTLPGDYGFDPLGLGEQPE---- 83
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYN 149
+ KW E+++ R+AM G G + +++ +G+ +P WF+ G T
Sbjct: 84 --DLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGIGNLP-----VWFEAG-----ATKF 131
Query: 150 YWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLF 208
+A+ LF +++ LMGF E +R+ D+ +PGS ++ FLG E L G P YPGGPLF
Sbjct: 132 DFANTTALFFVQLLLMGFVETKRYMDFVSPGSQAKEGTFLGIEASLEGL-QPGYPGGPLF 190
Query: 209 NPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
NP+GL KD ++ + KLKE+KNGRLAM+A+LG+ VQ VT GP NLL HL+DP N N+
Sbjct: 191 NPMGLAKDIENANEVKLKEIKNGRLAMVAMLGFIVQASVTHAGPIDNLLTHLSDPFNKNI 250
Query: 269 LTSLKF 274
+ +L
Sbjct: 251 IHALTL 256
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 133/223 (59%), Gaps = 17/223 (7%)
Query: 52 GADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAM 110
G R W YLDG+LPGD+GFDPLGL +PE KW E+++ R+AM
Sbjct: 59 GTQRATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEAL------KWYVQAELVHCRFAM 112
Query: 111 LGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEH 170
G G + ++L +G WF+ G A +++ A+ LF +++ LMGFAE
Sbjct: 113 AGVAGILFTDLLRVSG---NSDLPVWFEAG----AAKFDF-ANTTALFFVQLFLMGFAET 164
Query: 171 RRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
+R+ D+ NPGS + F+G E L G P YPGGPLFNPLGL KD ++ D KLKE+K
Sbjct: 165 KRYMDFKNPGSQAEEGTFIGLEAALAGQ-QPGYPGGPLFNPLGLAKDIENAHDEKLKEIK 223
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
NGRLAM+A+LG+ VQ VT GP NLL HL+DP N N++ +
Sbjct: 224 NGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTF 266
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 133/223 (59%), Gaps = 17/223 (7%)
Query: 52 GADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAM 110
G R W YLDG+LPGD+GFDPLGL +PE KW E+++ R+AM
Sbjct: 59 GTQRATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEAL------KWYVQAELVHCRFAM 112
Query: 111 LGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEH 170
G G + ++L +G WF+ G A +++ A+ LF +++ LMGFAE
Sbjct: 113 AGVAGILFTDLLRVSG---NSDLPVWFEAG----AAKFDF-ANTTALFFVQLFLMGFAET 164
Query: 171 RRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
+R+ D+ NPGS + F+G E L G P YPGGPLFNPLGL KD ++ D KLKE+K
Sbjct: 165 KRYMDFKNPGSQAEEGTFIGLEAALAGQ-QPGYPGGPLFNPLGLAKDIENAHDEKLKEIK 223
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
NGRLAM+A+LG+ VQ VT GP NLL HL+DP N N++ +
Sbjct: 224 NGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTF 266
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 137/222 (61%), Gaps = 21/222 (9%)
Query: 55 RPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGA 113
RP W +YLDG+L GDYGFDPLGL DPE +W E+++ R+AMLG
Sbjct: 4 RPTWLPGLDPPAYLDGTLAGDYGFDPLGLGEDPESL------RWYVQAELVHARFAMLGV 57
Query: 114 VGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHR 171
G + ++L GL IP WF+ G + Y + + TL ++++ LMGFAE +
Sbjct: 58 FGILVTDLLRVTGLSKIP-----VWFEAGAV----KYEF-TNTQTLIIVQLLLMGFAETK 107
Query: 172 RFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R+ D+ +PGS ++ F G E G +P YPGGPL NPLGL KD K+ ++ KLKE+KN
Sbjct: 108 RYMDFISPGSQAKEGSFFGLEASFEGL-EPGYPGGPLLNPLGLAKDIKNARESKLKEIKN 166
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
GRLAM+AILG FVQ VT VGP NL++HL++P + V+ +L
Sbjct: 167 GRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTL 208
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 25/238 (10%)
Query: 43 AASTPPVKQGA----DRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKW 97
AA+TP +Q RP W +LDG+L GD+GFDPLGL+ DP +W
Sbjct: 38 AAATPRYRQTCVGAQQRPTWLPGLDPPPHLDGTLAGDFGFDPLGLAEDPASL------RW 91
Query: 98 LAYGEVINGRYAMLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYNYWADPY 155
E+++ R+AMLG G + ++L G+ IP WF+ G + Y++ A+
Sbjct: 92 YVQAELVHCRFAMLGVFGILVTDLLRVTGISKIP-----VWFEAGAV----KYDF-ANTK 141
Query: 156 TLFVLEMALMGFAEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLG 214
TLF++++ LMGF E +R+ D+ +PGS ++ F G E L G +P YPGGPL NPLGL
Sbjct: 142 TLFLVQLVLMGFVETKRYMDFVSPGSQAKEGSFFGLEASLKGL-EPGYPGGPLLNPLGLA 200
Query: 215 KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
KD + D+KLKE+KNGRLAM+A+LG FVQ VT VGP NL++HL++P + ++ +L
Sbjct: 201 KDINNAHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTL 258
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 132/223 (59%), Gaps = 17/223 (7%)
Query: 52 GADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAM 110
G RP W +LDG+LPGD+GFDPLGL DP KW E+++ R+AM
Sbjct: 56 GTQRPTWLPGLDPPPHLDGTLPGDFGFDPLGLGEDPASL------KWYVQAELVHCRFAM 109
Query: 111 LGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEH 170
G G + ++L +G WF+ G A + + A+ LF +++ LMGFAE
Sbjct: 110 AGVAGILFTDLLRVSG---NSDLPVWFEAG----AAKFEF-ANTTALFFVQLLLMGFAET 161
Query: 171 RRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
+R+ D+ NPGS + F+G E L G P YPGGPLFNPLGL KD ++ + KLKE+K
Sbjct: 162 KRYMDFKNPGSQAEEGTFIGLEAALAGQ-QPGYPGGPLFNPLGLAKDIENAHEEKLKEIK 220
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
NGRLAM+A+LG+ VQ VT GP NLL HL+DP N N++ +
Sbjct: 221 NGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHAF 263
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/219 (47%), Positives = 129/219 (58%), Gaps = 20/219 (9%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DRPLWF ++ +LDGSLPGD+GFDPLGL SDPE KW E+++ R+AMLG
Sbjct: 1 DRPLWFPGSKAPEWLDGSLPGDFGFDPLGLGSDPELL------KWFVQAELVHCRWAMLG 54
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
A G PE L KAG++ T AG Y+ADP TLFV+E+ L +AE RR
Sbjct: 55 AAGIFIPEALTKAGIL---------NTPSWNVAGDQQYFADPTTLFVIELILFAWAEGRR 105
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG--KDEKSMKDFKLKEVKN 230
+ D NPG + K G D YPGG F+PLG G KD K +K+ + KE+KN
Sbjct: 106 WADIVNPGCVNVDPVFPNNKLTGT--DVGYPGGLWFDPLGWGQTKDAKKLKELRTKEIKN 163
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
GRLAMLA+LG VQ T GP NLL HLADP +N +
Sbjct: 164 GRLAMLAVLGAVVQANYTHTGPIDNLLAHLADPGHNTIF 202
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/273 (41%), Positives = 150/273 (54%), Gaps = 34/273 (12%)
Query: 8 SSSLTSSVETARQILGA------RSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFAS 61
S+S T +V + + A RSA+ + K SF VRA Q +RPLWF
Sbjct: 17 STSATKAVSSGSAVKAAFFGKTLRSAK--VSAVSKASFSVRA-------QATERPLWFPG 67
Query: 62 KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
+ +LDGSLPGD+GFDPLGL S+PE KW E+++ R+AMLGA G PE
Sbjct: 68 STAPEWLDGSLPGDFGFDPLGLGSEPELL------KWFVQAEIVHCRWAMLGAAGIFIPE 121
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
+L K G++ + W+ AG Y+AD TLF++E+ MG+AE RR+ D PG
Sbjct: 122 LLTKIGILNTPS---WYT------AGEQTYFADQTTLFIVELLFMGWAEGRRWADILKPG 172
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKD-EKSMKDFKLKEVKNGRLAMLAIL 239
S+ K G D YPGG F+PLG G +K+ + KE+KNGRLAMLA++
Sbjct: 173 SVNTDPVFPNNKLTGT--DVGYPGGFWFDPLGWGAGGAAKVKELRTKEIKNGRLAMLAVM 230
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
G + Q + TG GP NL HLADP + V +L
Sbjct: 231 GAWFQAVYTGTGPIDNLFAHLADPGHATVFAAL 263
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 136/223 (60%), Gaps = 18/223 (8%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAML 111
+R W YLDG+L GDYGFDPLGL DPE KW E+++ R+AML
Sbjct: 44 VERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESL------KWYVQAELVHSRFAML 97
Query: 112 GAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHR 171
G G + ++L G+ W++ G + +++ A TL V++ LMGFAE +
Sbjct: 98 GVAGILFTDLLRTTGI---RNLPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAETK 149
Query: 172 RFQDWANPGSMGRQ--YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R+ D+ +PGS ++ +F G E L G +P YPGGPL NPLGL KD K+ D+KLKE+K
Sbjct: 150 RYMDFVSPGSQAKEGSFFFGIEAALEGL-EPGYPGGPLLNPLGLAKDVKNAHDWKLKEIK 208
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
NGRLAM+A+LG+FVQ VT GP NL++HL++P + ++ +L
Sbjct: 209 NGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHXTIIQTL 251
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 131/221 (59%), Gaps = 17/221 (7%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGA 113
DRPLW ++ +LDGSLPGDYGFDPL L+ G W+ E+++ R+AMLGA
Sbjct: 13 DRPLWLPGSEAPKWLDGSLPGDYGFDPLDLAAEPG-----RLNWMVQAELVHCRWAMLGA 67
Query: 114 VGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRF 173
G PE+L K G++ + W++ AG Y+AD TLF++E+ LM +AE RR+
Sbjct: 68 AGIFIPELLTKIGILNTPS---WYK------AGDATYFADQGTLFIVELLLMAWAESRRW 118
Query: 174 QDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGR 232
D A PGS+ K G D YPGG F+PLG G E +K+ + KEVKNGR
Sbjct: 119 ADIARPGSVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGR 176
Query: 233 LAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
LAMLA+LG FVQ VT VGP NL HLADP + +L S+
Sbjct: 177 LAMLAVLGAFVQANVTHVGPIDNLFAHLADPYHTTILQSVS 217
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 137/239 (57%), Gaps = 23/239 (9%)
Query: 29 SPTGSSRKGSFVVRAASTP-PVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DP 86
S G + + RA+ P V ADRP+W+ K ++LDGSLPGDYGFDPL LS DP
Sbjct: 9 STAGLKTRVATKTRASRGPVAVSANADRPVWYPGKAPAAHLDGSLPGDYGFDPLSLSADP 68
Query: 87 EGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPP 144
E +W+ E+ + R+AMLG G +APE+L K G+ +P W
Sbjct: 69 EMR------QWMVQAELQHARWAMLGVAGCVAPELLTKIGVADLPN-----WVD------ 111
Query: 145 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 204
A TY YWA TLF ++MA+ +AE RR+QD NPGS+ G+ + D YP
Sbjct: 112 AATYQYWAPGGTLFFIQMAMFNWAEIRRWQDMKNPGSVNTDPLFGYNSN-DTNTDVGYPK 170
Query: 205 GPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
G LF+ G KDEK+ + KLKE+KNGRLAMLA LG Q + TGVGP +NL H+ +P
Sbjct: 171 G-LFDKFGWAKDEKTTAELKLKEIKNGRLAMLAFLGICAQYVQTGVGPVENLFSHMGNP 228
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 136/223 (60%), Gaps = 18/223 (8%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAML 111
+R W YLDG+L GDYGFDPLGL DPE KW E+++ R+AML
Sbjct: 44 VERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESL------KWYVQAELVHSRFAML 97
Query: 112 GAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHR 171
G G + ++L G+ W++ G + +++ A TL V++ LMGFAE +
Sbjct: 98 GVAGILFTDLLRTTGI---RNLPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAETK 149
Query: 172 RFQDWANPGSMGRQ--YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R+ D+ +PGS ++ +F G E L G +P YPGGPL NPLGL KD ++ D+KLKE+K
Sbjct: 150 RYMDFVSPGSQAKEGSFFFGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIK 208
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
NGRLAM+A+LG+FVQ VT GP NL++HL++P + ++ +L
Sbjct: 209 NGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 136/223 (60%), Gaps = 18/223 (8%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAML 111
+R W YLDG+L GDYGFDPLGL DPE KW E+++ R+AML
Sbjct: 36 VERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESL------KWYVQAELVHSRFAML 89
Query: 112 GAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHR 171
G G + ++L G+ W++ G + +++ A TL V++ LMGFAE +
Sbjct: 90 GVAGILFTDLLRTTGI---RNLPVWYEAGAV----KFDF-ASTKTLIVVQFLLMGFAETK 141
Query: 172 RFQDWANPGSMGRQ--YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R+ D+ +PGS ++ +F G E L G +P YPGGPL NPLGL KD ++ D+KLKE+K
Sbjct: 142 RYMDFVSPGSQAKEGSFFFGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIK 200
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
NGRLAM+A+LG+FVQ VT GP NL++HL++P + ++ +L
Sbjct: 201 NGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 243
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 106/257 (41%), Positives = 147/257 (57%), Gaps = 25/257 (9%)
Query: 22 LGARSAQSPTGSSRKGSFVVRAAS---TPPVKQGADRPLWFASKQSLSYLDGSLPGDYGF 78
L R S + R S VRAA P V +R W YLDG L GDYGF
Sbjct: 14 LHQRRDTSSVITRRISS--VRAAGGGINPTV--AVERATWLPGLDPPPYLDGKLAGDYGF 69
Query: 79 DPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWF 137
DPLGL DPE +W E+++ R+AMLG G + ++L G+ W+
Sbjct: 70 DPLGLGEDPESL------RWYVQAELVHSRFAMLGVAGILFTDLLRTTGI---RNLPVWY 120
Query: 138 QTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ--YFLGFEKYLG 195
+ G + +++ A TL V++ LMGFAE +R+ D+ +PGS ++ +F G E L
Sbjct: 121 EAGAV----KFDF-ASTKTLIVVQFLLMGFAETKRYVDYVSPGSQAKEGSFFFGIEAALE 175
Query: 196 GSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN 255
G +P YPGGPL NPLGL KD K+ D+KLKE+KNGRLAM+A+LG+FVQ VT GP N
Sbjct: 176 GL-EPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDN 234
Query: 256 LLDHLADPVNNNVLTSL 272
L++HL++P + ++ +L
Sbjct: 235 LVEHLSNPWHKTIIQTL 251
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 136/223 (60%), Gaps = 18/223 (8%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAML 111
+R W YLDG+L GDYGFDPLGL DPE KW E+++ R+AML
Sbjct: 44 VERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESL------KWYVQAELVHSRFAML 97
Query: 112 GAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHR 171
G G + ++L G+ W++ G + +++ A TL V++ LMGFAE +
Sbjct: 98 GVAGILFTDLLRTTGI---RNLPVWYEAGAV----KFDF-ACTKTLIVVQFLLMGFAETK 149
Query: 172 RFQDWANPGSMGRQ--YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R+ D+ +PGS ++ +F G E L G +P YPGGPL NPLGL KD ++ D+KLKE+K
Sbjct: 150 RYMDFVSPGSQAKEGSFFFGLEAALEGL-EPGYPGGPLLNPLGLAKDVQNAHDWKLKEIK 208
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
NGRLAM+A+LG+FVQ VT GP NL++HL++P + ++ +L
Sbjct: 209 NGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 137/239 (57%), Gaps = 24/239 (10%)
Query: 26 SAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS- 84
A++ T + + S VV A + GA+RP+W+ K +LDGSLPGD+GFDPL LS
Sbjct: 16 KARATTTRASRRSVVVSAEA------GAERPVWYPGKAPAPHLDGSLPGDFGFDPLSLSA 69
Query: 85 DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPP 144
DPE KW+ E+ + R+AMLG GA+APE+L K G+ W
Sbjct: 70 DPEMR------KWMVQAELQHARWAMLGVAGAVAPELLTKIGVADLPN---WVD------ 114
Query: 145 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 204
AGTY YWA LF ++MA+ +AE RR+QD NPGSM G+ + D YPG
Sbjct: 115 AGTYQYWAPAGPLFFIQMAMFNWAEVRRWQDMKNPGSMNTDPLFGYNSNDTNT-DVGYPG 173
Query: 205 GPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
G LF+ LG KD K+ KLKE+KNGRLAM+A LG Q + TG GP +NL H+A P
Sbjct: 174 G-LFDKLGYAKDPAKAKELKLKEIKNGRLAMVAFLGICAQYVQTGQGPVENLFSHIASP 231
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/278 (41%), Positives = 154/278 (55%), Gaps = 27/278 (9%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ Q V ++L + ++ AR A G+++ G V A P G DRPLWF
Sbjct: 11 CSIQPRVRAALRAPTLPSQNAAVARMAGHRAGATKGG---VSAVCEP---LGPDRPLWFP 64
Query: 61 SKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
+LDGSLPGD+GFDPLGL SDPE +W A E+++ R+AML A G + P
Sbjct: 65 GSSPPPWLDGSLPGDFGFDPLGLGSDPELL------RWFAQAELMHSRWAMLAAAGILVP 118
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
E+L K G + + W AG +Y+ADP+TLFV +MALMG+AE RR+ D+ NP
Sbjct: 119 EVLEKWGFMEDYS---WID------AGARDYFADPWTLFVSQMALMGWAEGRRWADYLNP 169
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFN--PLGLGKDEKSMKDFKLKEVKNGRLAMLA 237
G + + L + D YPGG F+ G G E M + KE+KNGRLAMLA
Sbjct: 170 GCVAVEPRLPNRR--NPVPDVGYPGGLWFDWGNWGRGSPEPVMV-LRTKEIKNGRLAMLA 226
Query: 238 ILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
+G++ Q + TG GP NLL HLADP + NV ++ H
Sbjct: 227 FVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTSH 264
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 133/244 (54%), Gaps = 33/244 (13%)
Query: 40 VVRAASTP---------PVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGT 89
V R A++P P DRPLWF Q +LDGSLPGD+GFDPLGL SDPE
Sbjct: 41 VTRIAASPQAEAPVPAQPSLPNNDRPLWFPGSQPPEWLDGSLPGDFGFDPLGLGSDPELL 100
Query: 90 GGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLI--PQETALAWFQTGVIPPAGT 147
KW E+++ R+AMLGA G PE L KAG++ P T AG
Sbjct: 101 ------KWFVQAELVHCRWAMLGAAGIFIPEALTKAGILNTPSWTV-----------AGD 143
Query: 148 YNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
Y+ D TLFV+E+ L +AE RR+ D NPG + K G D YPGG
Sbjct: 144 QQYFTDATTLFVIEIILFAWAEGRRWADIINPGCVNVDPVFPNNKLTGT--DVGYPGGLW 201
Query: 208 FNPLGLGK--DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVN 265
F+PLG G+ D +KD + +E+KNGRLAMLA+LG VQ T GP NLL HLADP +
Sbjct: 202 FDPLGWGQTGDAAKLKDLRTREIKNGRLAMLAVLGAVVQANYTHTGPIDNLLAHLADPGH 261
Query: 266 NNVL 269
N +
Sbjct: 262 NTIF 265
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 135/226 (59%), Gaps = 17/226 (7%)
Query: 49 VKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGR 107
V Q RP W YL+G+L GD+GFDPLGL DPE +W E+++ R
Sbjct: 50 VVQAQQRPTWLPGLDPPPYLNGTLAGDFGFDPLGLGEDPENL------RWYVQAELVHAR 103
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGF 167
+AM G G + ++L G+ W++ G + + + A LF++++ LMGF
Sbjct: 104 FAMAGVAGILVTDLLRVTGI---SNLPVWYEAGAV----KFEF-ASTEALFIVQLILMGF 155
Query: 168 AEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
E +R+ D+ NPGS ++ F G E L G +P YPGGPL NPLGL +D K+ D+KLK
Sbjct: 156 VETKRYMDFTNPGSQAKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLARDIKNAHDWKLK 214
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
E+KNGRLAM+A+LG FVQ VT GP +NL++HL++P + ++ ++
Sbjct: 215 EIKNGRLAMVAMLGVFVQASVTHAGPIENLVEHLSNPWHKTIIQTI 260
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 150/288 (52%), Gaps = 34/288 (11%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVV---------------RAAST 46
A SSS+T++V A ++ + + K SF+V RAA T
Sbjct: 5 AAVVCASSSVTAAVVVAPSSSSQKTILANNVGAAKASFLVGRAVSLRQTKAAMPRRAAVT 64
Query: 47 PPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVIN 105
+RPLWF +LDGSLPGD+GFDPLGL SDPE KW+ E+++
Sbjct: 65 VSQAVQTERPLWFPGNTPPPWLDGSLPGDFGFDPLGLGSDPETL------KWMVQAELVH 118
Query: 106 GRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALM 165
R+AMLGA G PE+ K G++ + W+ AG Y+ D TLFV+EM +
Sbjct: 119 CRWAMLGAAGIFIPELCTKLGILNTPS---WYT------AGELEYFTDKTTLFVVEMIFL 169
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFK 224
G+AE RR+ D PGS+ K G D YPGG F+PLG G + +K+ +
Sbjct: 170 GWAEGRRWADILEPGSVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELR 227
Query: 225 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
KE+KNGRLAMLA++G + Q TG GP NLL HLADP + + +
Sbjct: 228 TKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGHATIFAAF 275
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 113/278 (40%), Positives = 153/278 (55%), Gaps = 27/278 (9%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ Q V ++L + ++ AR A G+++ G V A P G DRPLWF
Sbjct: 11 CSIQPRVRAALRAPTLPSQNAAVARMAGHRAGATKGG---VSAVCEP---LGPDRPLWFP 64
Query: 61 SKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
+LDGSLPGD+GFDPLGL SDPE +W A E+++ R+AML G + P
Sbjct: 65 GSSPPPWLDGSLPGDFGFDPLGLGSDPELL------RWFAQAELMHSRWAMLAVAGILVP 118
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
E+L K G + + W AG +Y+ADP+TLFV +MALMG+AE RR+ D+ NP
Sbjct: 119 EVLEKWGFMEDYS---WID------AGARDYFADPWTLFVSQMALMGWAEGRRWADYLNP 169
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFN--PLGLGKDEKSMKDFKLKEVKNGRLAMLA 237
G + + L + D YPGG F+ G G E M + KE+KNGRLAMLA
Sbjct: 170 GCVAVEPRLPNRR--NPVPDVGYPGGLWFDWGNWGRGSPEPVMV-LRTKEIKNGRLAMLA 226
Query: 238 ILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
+G++ Q + TG GP NLL HLADP + NV ++ H
Sbjct: 227 FVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTSH 264
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 138/253 (54%), Gaps = 26/253 (10%)
Query: 22 LGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPL 81
L + +P +R SF V AA+ P +RPLWF +LDGSLPGD+GFDPL
Sbjct: 40 LSLKKFTAPAAGTR--SFTVSAAAADP-----NRPLWFPGSTPPPWLDGSLPGDFGFDPL 92
Query: 82 GL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG 140
GL SDPE KW+ E+++ R+AMLGA G PE L K G++ +W+
Sbjct: 93 GLGSDPETL------KWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGIL---NTPSWYT-- 141
Query: 141 VIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
AG Y+ D TLF++EM +G+AE RR+ D PG + K G D
Sbjct: 142 ----AGELEYFTDKTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DV 195
Query: 201 AYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDH 259
YPGG F+PLG G +K+ + KE+KNGRLAMLA++G + Q + TG GP NL H
Sbjct: 196 GYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAH 255
Query: 260 LADPVNNNVLTSL 272
LADP + + +
Sbjct: 256 LADPGHATIFAAF 268
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 148/270 (54%), Gaps = 31/270 (11%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQS 64
A SS L + + R +L R A+S SS + SF VRAA+ DRP+WF
Sbjct: 20 ARASSFLGGAGRSGRLLL--RQAES---SSARASFAVRAAA-------PDRPIWFPGSTP 67
Query: 65 LSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILG 123
+LDGSLPGD+GFDPLGL SDPE +W E+++ R+AMLGA G PE L
Sbjct: 68 PPWLDGSLPGDFGFDPLGLGSDPESL------RWNVQAELVHCRWAMLGAAGIFIPEFLT 121
Query: 124 KAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMG 183
K G++ +W+ AG Y+ D TLF++E+ L+G+AE RR+ D PG +
Sbjct: 122 KIGIL---NTPSWYT------AGEQQYFTDTTTLFIIELILIGWAEGRRWADIIKPGCVN 172
Query: 184 RQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYF 242
K G D YPGG F+PLG G + +K+ + KE+KNGRLAMLA++G +
Sbjct: 173 TDPIFPNNKLTGT--DVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMGAW 230
Query: 243 VQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
Q TG GP NL HLADP + + +
Sbjct: 231 FQAEYTGTGPIDNLFAHLADPGHATIFQAF 260
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 144/255 (56%), Gaps = 18/255 (7%)
Query: 23 GARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLG 82
GA +A R+ + ST G DRP+WF +LDGSLPGD+GFDPLG
Sbjct: 33 GAAAASFTRTPQRRANATKGGVSTVCEPLGPDRPIWFPGSSPPPWLDGSLPGDFGFDPLG 92
Query: 83 L-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV 141
L S+PE +W A E+++GR+AML A G + P++L + G I + +WF
Sbjct: 93 LGSEPELL------RWFAQAELMHGRWAMLAAAGILVPDLLARWGFI--DAGFSWFD--- 141
Query: 142 IPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPA 201
AG+ Y+ADP+TLFV +MALMG+AE RR+ D+ PG + + F D
Sbjct: 142 ---AGSREYFADPWTLFVSQMALMGWAEGRRWADYLRPGCVDIE--PRFPNRRNPVPDVG 196
Query: 202 YPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
YPGG F+ G+ + + + KE+KNGRLAMLA +G++ Q + TG GP NLL HL
Sbjct: 197 YPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHL 256
Query: 261 ADPVNNNVLTSLKFH 275
ADP + N+ ++ H
Sbjct: 257 ADPGHCNIFSAFTSH 271
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 144/255 (56%), Gaps = 18/255 (7%)
Query: 23 GARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLG 82
GA +A R+ + ST G DRP+WF +LDGSLPGD+GFDPLG
Sbjct: 33 GAAAASFTRTPQRRANATKGGVSTVCEPLGPDRPIWFPGSSPPPWLDGSLPGDFGFDPLG 92
Query: 83 L-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV 141
L S+PE +W A E+++GR+AML A G + P++L + G I + +WF
Sbjct: 93 LGSEPELL------RWFAQAELMHGRWAMLAAAGILVPDLLARWGFI--DAGFSWFD--- 141
Query: 142 IPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPA 201
AG+ Y+ADP+TLFV +MALMG+AE RR+ D+ PG + + F D
Sbjct: 142 ---AGSREYFADPWTLFVSQMALMGWAEGRRWADYLRPGCVDIE--PRFPNRKNPVPDVG 196
Query: 202 YPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
YPGG F+ G+ + + + KE+KNGRLAMLA +G++ Q + TG GP NLL HL
Sbjct: 197 YPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHL 256
Query: 261 ADPVNNNVLTSLKFH 275
ADP + N+ ++ H
Sbjct: 257 ADPGHCNIFSAFTSH 271
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 141/259 (54%), Gaps = 24/259 (9%)
Query: 17 TARQILGAR-SAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGD 75
T++ LG + S T S + VR+ ST DRPLWF +LDGSLPGD
Sbjct: 29 TSKAFLGRKLKVNSSTASPSR----VRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLPGD 84
Query: 76 YGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
+GFDPLGL SDPE +W E+++ R+AMLGA G PE L K G++
Sbjct: 85 FGFDPLGLGSDPESL------RWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL---NTP 135
Query: 135 AWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL 194
+W+ AG Y+ D TLF++E+ +G+AE RR+ D NPG + K
Sbjct: 136 SWYT------AGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLT 189
Query: 195 GGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 253
G D YPGG F+PLG G + +K+ + KE+KNGRLAMLA++G + Q + TG GP
Sbjct: 190 GT--DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 247
Query: 254 QNLLDHLADPVNNNVLTSL 272
NL HLADP + + +
Sbjct: 248 DNLFAHLADPGHATIFAAF 266
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 137/226 (60%), Gaps = 29/226 (12%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DRPLWF +LDGSLPGD+GFDP+GL SDPE KWLA E+++ R+AMLG
Sbjct: 53 DRPLWFPGSSPPEWLDGSLPGDFGFDPIGLGSDPELL------KWLAQAELMHARWAMLG 106
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
G + PE+L K G + +W++ AGT Y+ADP TLF++++ALMG+ E RR
Sbjct: 107 VSGILIPELLEKMGYV---ENYSWYE------AGTQEYFADPTTLFIVQLALMGWVEGRR 157
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPA----YPGGPLFNPL--GLGKDEKSMKDFKLK 226
+ D NPGS + E L +P YPGG F+P+ G G E M + K
Sbjct: 158 WADLVNPGS------VDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMV-LRTK 210
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
E+KNGRLAMLA +G++ Q + TG GP +NL+ HLADP + N+ ++
Sbjct: 211 EIKNGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAF 256
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 136/246 (55%), Gaps = 26/246 (10%)
Query: 29 SPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPE 87
+P +R SF V AA+ P +RPLWF +LDGSLPGD+GFDPLGL SDPE
Sbjct: 48 APAAGTR--SFTVSAAAADP-----NRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPE 100
Query: 88 GTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGT 147
KW+ E+++ R+AMLGA G PE L K G++ +W+ AG
Sbjct: 101 TL------KWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGIL---NTPSWYT------AGE 145
Query: 148 YNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
Y+ D TLF++EM +G+AE RR+ D PG + K G D YPGG
Sbjct: 146 LEYFTDKTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLW 203
Query: 208 FNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNN 266
F+PLG G +K+ + KE+KNGRLAMLA++G + Q + TG GP NL HLADP +
Sbjct: 204 FDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHA 263
Query: 267 NVLTSL 272
+ +
Sbjct: 264 TIFAAF 269
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 133/236 (56%), Gaps = 19/236 (8%)
Query: 40 VVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWL 98
R+A+T V DRPLWF +LDGSLPGD+GFDPLGL SDPE +W
Sbjct: 50 TARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWN 103
Query: 99 AYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLF 158
E+++ R+AMLGA G PE+L K G++ +W+ AG Y+ D TLF
Sbjct: 104 QQAELVHCRWAMLGAAGIFIPELLTKIGIL---NTPSWYT------AGEQEYFTDTTTLF 154
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++E+ L+G+AE RR+ D PG + K G D YPGG F+PLG G
Sbjct: 155 IVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSP 212
Query: 219 S-MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
+ +K+ + KE+KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 213 AKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 112/278 (40%), Positives = 149/278 (53%), Gaps = 25/278 (8%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSS-RKGSFVV----RAASTPPVKQGADRP 56
+T A V+ S SS + I+GA A G R F+ R+ + V DRP
Sbjct: 8 STIAAVAFSSPSSQKNG-SIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRP 66
Query: 57 LWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
LWF +LDGSLPGD+GFDPLGL SDPE KW A E+++ R+AMLGA G
Sbjct: 67 LWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAG 120
Query: 116 AIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQD 175
PE L K G++ +W+ AG Y+ D TLFV+E+ L+G+AE RR+ D
Sbjct: 121 IFIPEFLTKIGVL---NTPSWYT------AGEQEYFTDTTTLFVIELVLIGWAEGRRWAD 171
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MKDFKLKEVKNGRLA 234
PG + K G D YPGG F+PLG G + +K+ + KE+KNGRLA
Sbjct: 172 IIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLA 229
Query: 235 MLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
MLA++G + Q + TG GP NL HLADP + + +
Sbjct: 230 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 135/230 (58%), Gaps = 17/230 (7%)
Query: 45 STPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEV 103
TP V RP W YLDG+L GD+GFDPLGL DP+ KW E+
Sbjct: 47 CTPVVVHAQQRPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPQSL------KWYVQAEL 100
Query: 104 INGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMA 163
++ R+AM G G + ++L G+ W++ G + + + A TL V+++
Sbjct: 101 VHARFAMAGVAGILFTDLLRVTGI---RKLPVWYEAGAV----KFEF-ASTRTLIVVQLL 152
Query: 164 LMGFAEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKD 222
LMGFAE +R+ D+ +PGS ++ F G E L G +P YPGGPL NPLGL +D ++
Sbjct: 153 LMGFAETKRYMDFVSPGSQAKEGSFFGLESALEGL-EPGYPGGPLLNPLGLARDIENAHV 211
Query: 223 FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+KLKE+KNGRLAM+A++G FVQ VT GP NL++HL++P + ++ +L
Sbjct: 212 WKLKEIKNGRLAMVAMVGIFVQAAVTHAGPIDNLIEHLSNPWHRTIIQTL 261
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 150/273 (54%), Gaps = 23/273 (8%)
Query: 5 ALVSSSLTS--SVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASK 62
AL S++L+S + E ++ R+ + + R ++ + S DRPLWF
Sbjct: 4 ALSSTALSSLPNREIRQKGFPDRTPTCLSLTRRTVAYATKGVSAVCEPLPPDRPLWFPGS 63
Query: 63 QSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEI 121
+LDGSLPGD+GFDPLGL SDPE KW A E+++ R+AML G + PE+
Sbjct: 64 SPPEWLDGSLPGDFGFDPLGLGSDPELL------KWFAQAELMHARWAMLAVFGILVPEL 117
Query: 122 LGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGS 181
L K G I +W+ AG Y+ DP TLFV++M LMG+ E RR+ D NPGS
Sbjct: 118 LEKIGYIEN---FSWYD------AGAREYFVDPTTLFVVQMGLMGWVEGRRWADMVNPGS 168
Query: 182 MGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
+ + D YPGG F+P+ G G E M + KE+KNGRLAMLA +
Sbjct: 169 VDIEP--KVPHITNPKPDVGYPGGLWFDPMMWGRGSPEPVMV-LRTKEIKNGRLAMLAFV 225
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
G++ Q + TG GP +NL+ HLADP + N+ ++
Sbjct: 226 GFWFQAIYTGEGPIENLMAHLADPGHCNIFSAF 258
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 130/243 (53%), Gaps = 30/243 (12%)
Query: 36 KGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-------SDPEG 88
G + A + P +RPLWF Q+ +LDGSLPGD+GFDPLGL SDPE
Sbjct: 49 NGDMTISAVAAPQ----NERPLWFPGSQAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPET 104
Query: 89 TGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTY 148
KW E+++ R+AMLGA G PE L K G++ T AG
Sbjct: 105 L------KWFVQAELVHCRWAMLGAAGIFIPEALTKMGIL---------NTPSWTVAGDA 149
Query: 149 NYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLF 208
+Y+ D TLFV+E+ L +AE RR+ D NPG + K G D YPGG F
Sbjct: 150 DYFTDKTTLFVIELILFAWAEGRRWADIVNPGCVNVDPVFPNNKLTGT--DVGYPGGLWF 207
Query: 209 NPLGLGK--DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNN 266
+PLG G+ D +KD + +E+KNGRLAMLA+LG VQ T GP NL+ HL DP +N
Sbjct: 208 DPLGWGQTSDAAKLKDLRTREIKNGRLAMLAVLGAIVQANYTHTGPIDNLVAHLVDPGHN 267
Query: 267 NVL 269
+
Sbjct: 268 TIF 270
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 131/234 (55%), Gaps = 19/234 (8%)
Query: 41 VRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLA 99
VR+ +T DRPLWF +LDGSLPGD+GFDPLGLS DPE KW
Sbjct: 49 VRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESL------KWNV 102
Query: 100 YGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFV 159
E+++ R+AMLGA G PE L K G++ +W+ AG Y+ D TLF+
Sbjct: 103 QAELVHCRWAMLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDTTTLFI 153
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEK 218
+E+ +G+AE RR+ D NPG + K G D YPGG F+PLG G +
Sbjct: 154 VELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPQ 211
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+K+ + KE+KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 212 KLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 265
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 131/234 (55%), Gaps = 19/234 (8%)
Query: 41 VRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLA 99
VR+ +T DRPLWF +LDGSLPGD+GFDPLGLS DPE KW
Sbjct: 49 VRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESL------KWNV 102
Query: 100 YGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFV 159
E+++ R+AMLGA G PE L K G++ +W+ AG Y+ D TLF+
Sbjct: 103 QAELVHCRWAMLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDTTTLFI 153
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEK 218
+E+ +G+AE RR+ D NPG + K G D YPGG F+PLG G +
Sbjct: 154 VELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPQ 211
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+K+ + KE+KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 212 KLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 265
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 135/227 (59%), Gaps = 21/227 (9%)
Query: 52 GADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAM 110
G DRP+WF +LDGSLPGD+GFDPLGL S+PE +W A E+++ R+AM
Sbjct: 64 GPDRPVWFPGTSPPPWLDGSLPGDFGFDPLGLGSEPETL------RWFAQAELMHSRWAM 117
Query: 111 LGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEH 170
L G + PEIL K G + + +W+ AG Y+ADP+TLF+ +MALMG+AE
Sbjct: 118 LAVAGILIPEILQKWGFMEE---FSWYT------AGEREYFADPWTLFIAQMALMGWAEG 168
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN--PLGLGKDEKSMKDFKLKEV 228
RR+ D+ NPGS+ + F + D YPGG F+ G G E M + KE+
Sbjct: 169 RRWMDYLNPGSVDIE--PRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMV-LRTKEI 225
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
KNGRLAMLA +G++ Q + TG GP NLL HLADP + N+ ++ H
Sbjct: 226 KNGRLAMLAFVGFWFQAVYTGQGPVDNLLAHLADPGHCNIFSAFTSH 272
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 112/278 (40%), Positives = 147/278 (52%), Gaps = 29/278 (10%)
Query: 6 LVSSSLTSSVETARQILGARSAQSPTGSSRKGSFV-VRAASTPPVKQGA-----DRPLWF 59
SSSL+S R + +S G K V VR +T V DRPLWF
Sbjct: 5 FASSSLSSLPTRTRD----KPQKSLLGKIEKCQAVKVRVNATKGVSSVCEPLPPDRPLWF 60
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
+LDGSLPGD+GFDPLGL SDPE KW A E+I+GR+AML A G +
Sbjct: 61 PGSSPPEWLDGSLPGDFGFDPLGLGSDPESL------KWFAQAELIHGRWAMLAAAGILI 114
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN 178
PE L + G I WF AGT Y+ADP TLFV+++ LMG+ E RR+ D
Sbjct: 115 PEWLERLGFI---DNFNWFD------AGTREYFADPTTLFVVQLILMGWIEGRRWADMIK 165
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLA 237
PG + L + D YPGG F+P G+ + + + KE+KNGRLAMLA
Sbjct: 166 PGCVDIDPKLPHKT--KPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAMLA 223
Query: 238 ILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
+G++ Q + TG GP NL+ H+ADP + N+ ++ H
Sbjct: 224 FVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTSH 261
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 112/278 (40%), Positives = 147/278 (52%), Gaps = 29/278 (10%)
Query: 6 LVSSSLTSSVETARQILGARSAQSPTGSSRKGSFV-VRAASTPPVKQGA-----DRPLWF 59
SSSL+S R + +S G K V VR +T V DRPLWF
Sbjct: 5 FASSSLSSLPTRTRD----KPQKSLLGKIEKCQAVKVRVNATKGVSSVCEPLPPDRPLWF 60
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
+LDGSLPGD+GFDPLGL SDPE KW A E+I+GR+AML A G +
Sbjct: 61 PGSSPPEWLDGSLPGDFGFDPLGLGSDPESL------KWFAQAELIHGRWAMLAAAGILI 114
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN 178
PE L + G I WF AGT Y+ADP TLFV+++ LMG+ E RR+ D
Sbjct: 115 PEWLERLGFI---DNFNWFD------AGTREYFADPTTLFVVQLILMGWIEGRRWADMIK 165
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLA 237
PG + L + D YPGG F+P G+ + + + KE+KNGRLAMLA
Sbjct: 166 PGCVDIDPKLPHKT--KPKPDIGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAMLA 223
Query: 238 ILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
+G++ Q + TG GP NL+ H+ADP + N+ ++ H
Sbjct: 224 FVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTSH 261
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 133/224 (59%), Gaps = 17/224 (7%)
Query: 51 QGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYA 109
Q R W +LDG+L GD+GFDPLGL DP+ KW E+++ R+A
Sbjct: 46 QSEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSL------KWYVQAELVHCRFA 99
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 169
MLG G + ++L G+ W+ G + Y + A+ TLF++++ LMGF E
Sbjct: 100 MLGVSGVLLTDLLRVTGI---SELPVWYNAGAV----EYGF-ANKRTLFIVQLLLMGFVE 151
Query: 170 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
+R+ D+ +PGS ++ F G E G +P YPGGPL NPLG+ KD K+ D+KLKE+
Sbjct: 152 TKRYMDFKSPGSQAQEGTFFGLEAAFKGL-EPGYPGGPLLNPLGIAKDIKNAHDWKLKEI 210
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
KNGRLAM+A+LG FVQ VT GP NL++HL++P + ++ +L
Sbjct: 211 KNGRLAMVAMLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTL 254
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 103/262 (39%), Positives = 145/262 (55%), Gaps = 19/262 (7%)
Query: 15 VETARQILGARSAQSPTGSSR-KGSFVVRAASTPPVKQGAD-RPLWFASKQSLSYLDGSL 72
+++ R + R+ Q + R + + R S G+D RP+W +LDGSL
Sbjct: 1 MDSNRLSMVWRTPQPSSCYPRIRNAHCARFLSIRAQSSGSDERPIWLPGLSPPQHLDGSL 60
Query: 73 PGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQE 131
GD+GFDPL L DPE +W E+++ R+AM G G + ++L G
Sbjct: 61 AGDFGFDPLELGKDPETL------RWYVQAELVHSRFAMAGIAGILVTDLLRTVG---GR 111
Query: 132 TALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ-YFLGF 190
W++ G T +AD TLFV+++ LMG+AE RR+ D+ +PGS Q FLGF
Sbjct: 112 DLPVWYEAG-----ATEFEFADTRTLFVVQLILMGYAETRRYYDYISPGSQAAQDTFLGF 166
Query: 191 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
E L G YPGGP F+P GLG+D + + K KE+KNGRLAM+AILG FVQ T
Sbjct: 167 EDALAGL-QSGYPGGPFFDPAGLGRDINNARTLKEKELKNGRLAMVAILGVFVQAFFTKT 225
Query: 251 GPYQNLLDHLADPVNNNVLTSL 272
GP NLL H++DP +N ++ +L
Sbjct: 226 GPIDNLLTHVSDPWHNTIVQTL 247
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 140/243 (57%), Gaps = 18/243 (7%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFI 93
R+ + ST G DRP+WF +LDGSLPGD+GFDPLGL S+PE
Sbjct: 6 RRANATKGGVSTVCEPLGPDRPIWFPGSSPPPWLDGSLPGDFGFDPLGLGSEPELL---- 61
Query: 94 EPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD 153
+W A E+++GR+AML A G + P++L + G I + +WF AG+ Y+AD
Sbjct: 62 --RWFAQAELMHGRWAMLAAAGILVPDLLARWGFI--DAGFSWFD------AGSREYFAD 111
Query: 154 PYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGL 213
P+TLFV +MALMG+AE RR+ D+ PG + + F D YPGG F+
Sbjct: 112 PWTLFVSQMALMGWAEGRRWADYLRPGCVDIE--PRFPNRKNPVPDVGYPGGLWFDWANW 169
Query: 214 GK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
G+ + + + KE+KNGRLAMLA +G++ Q + TG GP NLL HLADP + N+ ++
Sbjct: 170 GRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAF 229
Query: 273 KFH 275
H
Sbjct: 230 TSH 232
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/247 (42%), Positives = 141/247 (57%), Gaps = 22/247 (8%)
Query: 32 GSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTG 90
GS R G+ + ST G DRP+WF +LDGSLPGD+GFDPLG S+PE
Sbjct: 46 GSHRTGA-TKSSLSTVCEPLGPDRPVWFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESL- 103
Query: 91 GFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY 150
+W A E+++GR+AML G + PEIL K G + + +W+ AG Y
Sbjct: 104 -----RWFAQAELMHGRWAMLAVAGILIPEILQKWGFMEE---FSWYT------AGEREY 149
Query: 151 WADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN- 209
+ADP+TLFV +MALMG+ E RR+ D+ NPGS+ + F + D YPGG F+
Sbjct: 150 FADPWTLFVTQMALMGWVEGRRWMDYLNPGSVDIE--PRFPNRKNPTPDVGYPGGLWFDW 207
Query: 210 -PLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
G G E M + KE+KNGRLAMLA +G++ Q + TG GP NL HLADP + N+
Sbjct: 208 GNWGRGSPEPVMV-LRTKEIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNI 266
Query: 269 LTSLKFH 275
++ H
Sbjct: 267 FSAFTSH 273
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/247 (42%), Positives = 141/247 (57%), Gaps = 22/247 (8%)
Query: 32 GSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTG 90
GS R G+ + ST G DRP+WF +LDGSLPGD+GFDPLG S+PE
Sbjct: 43 GSHRTGA-TKSSLSTVCEPLGPDRPVWFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESL- 100
Query: 91 GFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY 150
+W A E+++GR+AML G + PEIL K G + + +W+ AG Y
Sbjct: 101 -----RWFAQAELMHGRWAMLAVAGILIPEILQKWGFMEE---FSWYT------AGEREY 146
Query: 151 WADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN- 209
+ADP+TLFV +MALMG+ E RR+ D+ NPGS+ + F + D YPGG F+
Sbjct: 147 FADPWTLFVTQMALMGWVEGRRWMDYLNPGSVDIE--PRFPNRKNPTPDVGYPGGLWFDW 204
Query: 210 -PLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
G G E M + KE+KNGRLAMLA +G++ Q + TG GP NL HLADP + N+
Sbjct: 205 GNWGRGSPEPVMV-LRTKEIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNI 263
Query: 269 LTSLKFH 275
++ H
Sbjct: 264 FSAFTSH 270
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/262 (39%), Positives = 142/262 (54%), Gaps = 22/262 (8%)
Query: 13 SSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSL 72
S + T + L R + T ++ G+ R+ +T DRPLWF +LDGSL
Sbjct: 25 SPLGTTKAFLSGRKLKVNTFTAPVGA---RSTTTVCAAAEPDRPLWFPGSTPPPWLDGSL 81
Query: 73 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQE 131
PGD+GFDPLGLS DPE +W E+++ R+AMLGA G PE L K G++
Sbjct: 82 PGDFGFDPLGLSSDPESL------RWNVQAELVHCRWAMLGAAGIFIPEFLTKIGIL--- 132
Query: 132 TALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 191
+W+ AG Y+ D TLF++E+ +G+AE RR+ D PGS+
Sbjct: 133 NTPSWYT------AGEQEYFTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNN 186
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
K G D YPGG F+PLG G + +K+ + KE+KNGRLAMLA++G + Q + TG
Sbjct: 187 KLTGT--DVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 244
Query: 251 GPYQNLLDHLADPVNNNVLTSL 272
GP NL HLADP + V +
Sbjct: 245 GPIDNLFAHLADPGHATVFAAF 266
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 150/273 (54%), Gaps = 23/273 (8%)
Query: 5 ALVSSSLTS--SVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASK 62
AL S++L+S + E ++ R+ + + R + + S DRPLWF
Sbjct: 4 ALSSTALSSLPNREIRQKGFPERTPTCLSLTRRTIANATKGVSAVCEPLPPDRPLWFPGS 63
Query: 63 QSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEI 121
+LDGSLPGD+GFDPLGL SDPE KW A E+++ R+AML G + PE+
Sbjct: 64 SPPEWLDGSLPGDFGFDPLGLGSDPELL------KWFAQAELMHSRWAMLAVFGILVPEL 117
Query: 122 LGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGS 181
L + G I +W+ AGT Y+ DP TLFV++M LMG+ E RR+ D NPGS
Sbjct: 118 LERIGYIEN---FSWYD------AGTREYFVDPTTLFVVQMGLMGWVEGRRWADIVNPGS 168
Query: 182 MGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
+ + D YPGG F+P+ G G E M + KE+KNGRLAMLA +
Sbjct: 169 VDIEP--KVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMV-LRTKEIKNGRLAMLAFV 225
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
G++ Q + TG GP +NL+ HLADP + N+ ++
Sbjct: 226 GFWFQAIYTGEGPIENLMAHLADPGHCNIFSAF 258
>gi|412990668|emb|CCO18040.1| unknown [Bathycoccus prasinos]
Length = 227
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 108/265 (40%), Positives = 148/265 (55%), Gaps = 39/265 (14%)
Query: 7 VSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLS 66
+ S+TS V T+ A ++S + S + SFVV+A R +W+ + +
Sbjct: 1 MDCSITSRVNTS-----ALKSRSVSRQSARASFVVKA----------QRDVWWPGVDAPA 45
Query: 67 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125
+LDGSLPGD+GFDPLGLS DPE KW+ E+ + R+AMLG G + P+
Sbjct: 46 HLDGSLPGDFGFDPLGLSVDPE------MKKWMVQAELQHARWAMLGVAGMVGPD----- 94
Query: 126 GLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ 185
L P +T +W + AG + YWA LF ++MA+M +AE RR+QD +PGSM +
Sbjct: 95 -LAPWDTP-SWIE------AGKFEYWAPAGPLFFIQMAMMNWAEVRRWQDMKDPGSMNKD 146
Query: 186 YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQG 245
G+ + D YPGG LF+ LG K K + KLKE+KNGRLAM+AI G FVQG
Sbjct: 147 PLFGYNAN-DTNTDVGYPGG-LFDKLGYAK--KDLDTLKLKEIKNGRLAMVAIAGCFVQG 202
Query: 246 LVTGVGPYQNLLDHLADPVNNNVLT 270
TGV P NL H+A+P N+
Sbjct: 203 ATTGVSPLTNLTSHIANPGAVNIFN 227
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/247 (42%), Positives = 141/247 (57%), Gaps = 22/247 (8%)
Query: 32 GSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTG 90
GS R G+ + ST G DRP+WF +LDGSLPGD+GFDPLG S+PE
Sbjct: 46 GSHRTGA-TKSSLSTVCEPLGPDRPVWFPGTAPPPWLDGSLPGDFGFDPLGFGSEPESL- 103
Query: 91 GFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY 150
+W A E+++GR+AML G + PEIL K G + + +W+ AG Y
Sbjct: 104 -----RWFAQAELMHGRWAMLAVAGILIPEILQKWGFMEE---FSWYT------AGEREY 149
Query: 151 WADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN- 209
+ADP+TLFV +MALMG+ E RR+ D+ NPGS+ + F + D YPGG F+
Sbjct: 150 FADPWTLFVTQMALMGWVEGRRWMDYLNPGSVDIE--PRFPNRKNPTPDVGYPGGLWFDW 207
Query: 210 -PLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
G G E M + KE+KNGRLAMLA +G++ Q + TG GP NL HLADP + N+
Sbjct: 208 GNWGRGSPEPVMV-LRTKEIKNGRLAMLAFVGFWFQVVYTGQGPLGNLFAHLADPGHCNI 266
Query: 269 LTSLKFH 275
++ H
Sbjct: 267 FSAFTSH 273
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 137/253 (54%), Gaps = 27/253 (10%)
Query: 22 LGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPL 81
L R SP +SR S V A + P DRPLWF +LDGSLPGD+GFDPL
Sbjct: 40 LTVRKHTSPVVASR--SVTVCAVADP------DRPLWFPGSTPPPWLDGSLPGDFGFDPL 91
Query: 82 GL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG 140
GL SDPE +W E+++ R+AMLGA G PE L K G++ +W+
Sbjct: 92 GLGSDPETL------RWNVQAELVHCRWAMLGAAGIFIPEFLTKIGIL---NTPSWYD-- 140
Query: 141 VIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
AG Y+ D TLF++E+ +G+AE RR+ D PG + + G D
Sbjct: 141 ----AGKLEYFTDTTTLFIIELIFIGWAEGRRWADILKPGCVNTDPIFPNNRLTGT--DV 194
Query: 201 AYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDH 259
YPGG F+PLG G + +K+ + KE+KNGRLAMLA++G + Q + TG GP NL H
Sbjct: 195 GYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAH 254
Query: 260 LADPVNNNVLTSL 272
LADP + V +
Sbjct: 255 LADPGHATVFAAF 267
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 129/222 (58%), Gaps = 21/222 (9%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DRPLWF +LDGSLPGD+GFDPLGL SDPE +W A E+++ R+AML
Sbjct: 53 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELL------RWFAQAELMHSRWAMLA 106
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
G + PE L + G I +W+ AG ++ADP TLFV+++ALMG+ E RR
Sbjct: 107 VAGILIPECLERLGFIEN---FSWYD------AGAQEFFADPTTLFVVQLALMGWVEGRR 157
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKEVKN 230
+ D NPG + Q L F D YPGG F+P G G E M + KE+KN
Sbjct: 158 WADLINPGCVDIQ--LTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMV-LRTKEIKN 214
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
GRLAMLA +G+ Q + TG GP +NL+ H+ADP + NV ++
Sbjct: 215 GRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAF 256
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/253 (42%), Positives = 139/253 (54%), Gaps = 33/253 (13%)
Query: 22 LGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPL 81
LG + P SS SF V A K+G W S SYLDGSLPGD GFDPL
Sbjct: 30 LGREVSVKPMTSSSYRSFKVEA------KKGE----WLPGLSSPSYLDGSLPGDNGFDPL 79
Query: 82 GLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG 140
GL+ DPE KW E++N R+AMLG G + PE+ K G+I A W+
Sbjct: 80 GLAEDPENL------KWYVQAELVNSRWAMLGVAGMLLPEVFTKIGII---NAPQWYD-- 128
Query: 141 VIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
AG Y+A TLFV+E L + E RR+QD NPGS+ + F+ Y +
Sbjct: 129 ----AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKNYSLPPNEV 182
Query: 201 AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
YPGG +FNPL E++ K KE+ NGRLAMLA LG+ VQ VTG GP+ NLL H+
Sbjct: 183 GYPGG-IFNPLNFAPTEEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHI 237
Query: 261 ADPVNNNVLTSLK 273
+DP +N ++ +L+
Sbjct: 238 SDPWHNTIIQTLR 250
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 151/282 (53%), Gaps = 27/282 (9%)
Query: 1 MATQALVSSSLTSSVETARQ----ILGARSAQSPTGSS-RKGSFVVRAAS---TPPVKQG 52
A+ A+ + S++SS + Q ++G+ A +G R + A+ T V
Sbjct: 5 CASSAIAAVSISSSRQVLSQKTGFLVGSTKASFLSGKKLRLKKYTAPTAARSVTVCVAAD 64
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAML 111
DRPLWF +LDGSLPGD+GFDPLGL SDPE +W E+++ R+AML
Sbjct: 65 PDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETL------RWNVQAELVHCRWAML 118
Query: 112 GAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHR 171
GA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE R
Sbjct: 119 GAAGIFIPEFLTKIGIL---NTPSWYT------AGELEYFTDTTTLFIVELFFIGWAEGR 169
Query: 172 RFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKN 230
R+ D PG + K G D YPGG F+PLG G + +K+ + KE+KN
Sbjct: 170 RWADILKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKN 227
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
GRLAMLA++G + Q + TG GP NL HLADP + V ++
Sbjct: 228 GRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFSAF 269
>gi|357495585|ref|XP_003618081.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519416|gb|AET01040.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 94
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/94 (85%), Positives = 86/94 (91%)
Query: 182 MGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGY 241
MG+QYFLG EK LGGSG+PAYPGGP+FNPLG GKDEKS+KD KLKEVKNGRLAMLAILGY
Sbjct: 1 MGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGY 60
Query: 242 FVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
FVQ LVT VGPYQN L+HLADP NNN+LTSLKFH
Sbjct: 61 FVQALVTRVGPYQNFLNHLADPSNNNILTSLKFH 94
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 130/231 (56%), Gaps = 19/231 (8%)
Query: 44 ASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGE 102
AS V DRP+WF +LDGSLPGD+GFDPLGLS DP+ KW E
Sbjct: 41 ASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSL------KWNVQAE 94
Query: 103 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEM 162
+++ R+AMLGA G PE L K G++ +W+ AG Y+ D TLFV+E+
Sbjct: 95 IVHCRWAMLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDKTTLFVVEL 145
Query: 163 ALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MK 221
L+G+AE RR+ D PGS+ K G D YPGG F+PLG G + +K
Sbjct: 146 ILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKLK 203
Query: 222 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ + KE+KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 204 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 254
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 130/231 (56%), Gaps = 19/231 (8%)
Query: 44 ASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGE 102
AS V DRP+WF +LDGSLPGD+GFDPLGLS DP+ KW E
Sbjct: 41 ASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSL------KWNVQAE 94
Query: 103 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEM 162
+++ R+AMLGA G PE L K G++ +W+ AG Y+ D TLFV+E+
Sbjct: 95 IVHCRWAMLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDKTTLFVVEL 145
Query: 163 ALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MK 221
L+G+AE RR+ D PGS+ K G D YPGG F+PLG G + +K
Sbjct: 146 ILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKLK 203
Query: 222 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ + KE+KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 204 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 254
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/272 (39%), Positives = 146/272 (53%), Gaps = 30/272 (11%)
Query: 3 TQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASK 62
T +LV S+ S + + L R+ SPT + S V A+ P DRPLWF
Sbjct: 23 TGSLVGSTKASFLRGEK--LRLRTYTSPTAAR---SVTVCVAADP------DRPLWFPGS 71
Query: 63 QSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEI 121
+LDGSLPGD+GFDPLGL SDPE +W E+++ R+AMLGA G PE
Sbjct: 72 TPPPWLDGSLPGDFGFDPLGLGSDPETL------RWNVQAELVHCRWAMLGAAGIFIPEF 125
Query: 122 LGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGS 181
L K G++ +W+ AG Y+ D TLF++E+ +G+AE RR+ D PG
Sbjct: 126 LTKIGIL---NTPSWYS------AGEVEYFTDTTTLFIVELFFIGWAEGRRWADILKPGC 176
Query: 182 MGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILG 240
+ K G D YPGG F+PLG G + +K+ + KE+KNGRLAMLA++G
Sbjct: 177 VNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 234
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ Q + TG GP NL HLADP + V +
Sbjct: 235 AWFQHIYTGTGPIDNLFAHLADPGHATVFAAF 266
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/272 (39%), Positives = 146/272 (53%), Gaps = 30/272 (11%)
Query: 3 TQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASK 62
T +LV S+ S + + L R+ SPT + S V A+ P DRPLWF
Sbjct: 23 TGSLVGSTKASFLRGKK--LRLRTYTSPTAAR---SVTVCVAADP------DRPLWFPGS 71
Query: 63 QSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEI 121
+LDGSLPGD+GFDPLGL SDPE +W E+++ R+AMLGA G PE
Sbjct: 72 TPPPWLDGSLPGDFGFDPLGLGSDPETL------RWNVQAELVHCRWAMLGAAGIFIPEF 125
Query: 122 LGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGS 181
L K G++ +W+ AG Y+ D TLF++E+ +G+AE RR+ D PG
Sbjct: 126 LTKIGIL---NTPSWYS------AGEVEYFTDTTTLFIVELFFIGWAEGRRWADILKPGC 176
Query: 182 MGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILG 240
+ K G D YPGG F+PLG G + +K+ + KE+KNGRLAMLA++G
Sbjct: 177 VNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMG 234
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ Q + TG GP NL HLADP + V +
Sbjct: 235 AWFQHIYTGTGPIDNLFAHLADPGHATVFAAF 266
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 149/269 (55%), Gaps = 23/269 (8%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQS 64
A VS+ +++V A +P+ +R+ S A+S+P K A + W S
Sbjct: 2 ATVSTQASAAVFRPCAYKSRFLAGAPSKLNRELSIKPMASSSPSFKVEAKKGEWLPGLPS 61
Query: 65 LSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILG 123
SYL+GSLPGD GFDPLGL+ DPE +W E++NGR+AMLG G + PE+
Sbjct: 62 PSYLNGSLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVFT 115
Query: 124 KAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMG 183
K G+I A W+ AG Y+A TLFV+E L + E RR+QD NPG +
Sbjct: 116 KIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVN 166
Query: 184 RQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV 243
+ F++Y + YPGG +FNPL ++ K KE+ NGRLAMLA LG+ +
Sbjct: 167 QDPI--FKQYSLPPNECGYPGG-IFNPLNFAPTIEA----KEKELANGRLAMLAFLGFVI 219
Query: 244 QGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
Q VTG GP++NLL H++DP +N ++ +
Sbjct: 220 QHNVTGKGPFENLLQHISDPWHNTIVQTF 248
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 139/253 (54%), Gaps = 25/253 (9%)
Query: 22 LGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPL 81
L ++ S SR + V A+ P +RP+WF +LDGSLPGD+GFDPL
Sbjct: 24 LRLKNKASVPAVSRSAALVRAVAADP------ERPIWFPGSTPPEWLDGSLPGDFGFDPL 77
Query: 82 GLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG 140
GLS DP+ KW A E+++ R+AMLGA G PE L K G++ +W+
Sbjct: 78 GLSSDPDSL------KWNAQAELVHCRWAMLGAAGIFIPEFLTKIGIL---NTPSWYT-- 126
Query: 141 VIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
AG Y+ D TLFV+E+ L+G+AE RR+ D PGS+ K G D
Sbjct: 127 ----AGEQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGT--DV 180
Query: 201 AYPGGPLFNPLGLGKDEKS-MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDH 259
YPGG F+PLG G + +K+ + KE+KNGRLAMLA++G + Q + TG GP NL H
Sbjct: 181 GYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAH 240
Query: 260 LADPVNNNVLTSL 272
LADP + + +
Sbjct: 241 LADPGHATIFAAF 253
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 138/251 (54%), Gaps = 25/251 (9%)
Query: 17 TARQILGAR-SAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGD 75
T++ LG + S T S + VR+ ST DRPLWF +LDGSLPGD
Sbjct: 29 TSKAFLGRKLKVNSSTASPSR----VRSTSTVCTVAEPDRPLWFPGSTPPPWLDGSLPGD 84
Query: 76 YGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
+GFDPLGL SDPE +W E+++ R+AMLGA G PE L K G++
Sbjct: 85 FGFDPLGLGSDPESL------RWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL---NTP 135
Query: 135 AWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL 194
+W+ AG Y+ D TLF++E+ +G+AE RR+ D NPG + K
Sbjct: 136 SWYT------AGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLT 189
Query: 195 GGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 253
G D YPGG F+PLG G + +K+ + KE+KNGRLAMLA++G + Q + TG GP
Sbjct: 190 G--TDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 247
Query: 254 QNLL-DHLADP 263
NL HLADP
Sbjct: 248 DNLFAAHLADP 258
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 129/222 (58%), Gaps = 21/222 (9%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DRPLWF +LDGSLPGD+GFDPLGL SDPE +W A E+++ R+AML
Sbjct: 23 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELL------RWFAQAELMHSRWAMLA 76
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
G + PE L + G I +W+ AG ++ADP TLFV+++ALMG+ E RR
Sbjct: 77 VAGILIPECLERLGFIEN---FSWYD------AGAQEFFADPTTLFVVQLALMGWVEGRR 127
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKEVKN 230
+ D NPG + Q L F D YPGG F+P G G E M + KE+KN
Sbjct: 128 WADLINPGCVDIQ--LTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMV-LRTKEIKN 184
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
GRLAMLA +G+ Q + TG GP +NL+ H+ADP + NV ++
Sbjct: 185 GRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAF 226
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/268 (40%), Positives = 147/268 (54%), Gaps = 25/268 (9%)
Query: 9 SSLTSSVETARQILGARSAQSPTGSSRK--GSFVVRAASTPPVKQGADRPLWFASKQSLS 66
+++T+ A A ++ TGSS K V+ ++ K A + W S S
Sbjct: 2 ATVTTQASAAVFRPCASKSRFLTGSSGKLGREVSVKPMTSSSFKVEAKKGEWLPGLSSPS 61
Query: 67 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125
YLDGSLPGD GFDPLGL+ DPE KW E++N R+AMLG G + PE+ K
Sbjct: 62 YLDGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVAGMLLPEVFTKI 115
Query: 126 GLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ 185
G+I A W+ AG Y+A TLFV+E L + E RR+QD NPGS+ +
Sbjct: 116 GII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD 166
Query: 186 YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQG 245
F+ Y + YPGG +FNPL E++ K KE+ NGRLAMLA LG+ VQ
Sbjct: 167 PI--FKNYSLPPNEVGYPGG-IFNPLNFAPTEEA----KEKELANGRLAMLAFLGFIVQH 219
Query: 246 LVTGVGPYQNLLDHLADPVNNNVLTSLK 273
VTG GP+ NLL H++DP +N ++ +L+
Sbjct: 220 NVTGKGPFDNLLQHISDPWHNTIIQTLR 247
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 132/221 (59%), Gaps = 17/221 (7%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
+RPLW ++LDG+L GD+GFDPLGL DP+ + +W E+++ R+AM G
Sbjct: 1 ERPLWLPGTTPPAHLDGTLAGDFGFDPLGLGQDPQ------DLRWYVQAELVHSRFAMAG 54
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
G + ++L +G + WF+ G A +++ AD TLFV+++ LMGF E +R
Sbjct: 55 VAGILFTDLLRASG---RTDIPVWFEAG----ATKFDF-ADTTTLFVVQLILMGFVETKR 106
Query: 173 FQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNG 231
+ D PGS + F GFE G + YPGGPLFNPLG D + + KE+KNG
Sbjct: 107 WMDIVKPGSQAAEDSFFGFEAAFEGL-ETGYPGGPLFNPLGFANDPTKPQPLRWKEIKNG 165
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
RLAM+A++G+ VQ VT GP +NLL HL+DPV+N ++ +
Sbjct: 166 RLAMVAMVGFMVQAYVTKTGPIENLLTHLSDPVHNTIIQRI 206
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 103/255 (40%), Positives = 143/255 (56%), Gaps = 27/255 (10%)
Query: 21 ILGARSAQSPTG-SSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFD 79
+ GAR++ TG ++ + SF VR A+ +RP+WF +LDGSLPGD+GFD
Sbjct: 20 LAGARTSFLGTGKAATRSSFTVRTAA-------PERPIWFPGSTPPPWLDGSLPGDFGFD 72
Query: 80 PLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQ 138
P GL SDPE +W E+++ R+AMLGA G PE+L K G++ +W+
Sbjct: 73 PWGLGSDPESL------RWNVQAELVHCRWAMLGAAGIFIPELLTKIGIL---NTPSWYT 123
Query: 139 TGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSG 198
AG Y+ D TLFV+E+ L+G+AE RR+ D PGS+ K G
Sbjct: 124 ------AGEQEYFTDTTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGT-- 175
Query: 199 DPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLL 257
D YPGG F+PLG G + +K+ + KE+KNGRLAMLA++G + Q TG GP NL
Sbjct: 176 DVGYPGGLWFDPLGYGNGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLF 235
Query: 258 DHLADPVNNNVLTSL 272
HLADP + + +
Sbjct: 236 AHLADPGHATIFRAF 250
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 134/247 (54%), Gaps = 25/247 (10%)
Query: 28 QSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDP 86
QS R+ + +V A +RPLWF +LDGSLP D+GFDPLGL SDP
Sbjct: 52 QSKAAMPRRAAVIVSEAVQ------TERPLWFPGTTPPPWLDGSLPADFGFDPLGLGSDP 105
Query: 87 EGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG 146
E KW E+++ R+AMLGA G PE+L K G++ +W+ AG
Sbjct: 106 ETL------KWNVQSELVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWYT------AG 150
Query: 147 TYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGP 206
Y+ D TLFV+EM +G+AE RR+ D PGS+ K G D YPGG
Sbjct: 151 EQEYFTDKTTLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGT--DVGYPGGL 208
Query: 207 LFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVN 265
F+PLG G + +K+ + KE+KNGRLAMLA++G + Q TG GP NLL HLADP +
Sbjct: 209 WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGH 268
Query: 266 NNVLTSL 272
V +
Sbjct: 269 ATVFAAF 275
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 134/247 (54%), Gaps = 25/247 (10%)
Query: 28 QSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDP 86
QS R+ + +V A +RPLWF +LDGSLP D+GFDPLGL SDP
Sbjct: 52 QSKAAMPRRAAVIVSEAVQ------TERPLWFPGTTPPPWLDGSLPADFGFDPLGLGSDP 105
Query: 87 EGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG 146
E KW E+++ R+AMLGA G PE+L K G++ +W+ AG
Sbjct: 106 ETL------KWNVQSELVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWYT------AG 150
Query: 147 TYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGP 206
Y+ D TLFV+EM +G+AE RR+ D PGS+ K G D YPGG
Sbjct: 151 ELEYFTDKTTLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGT--DVGYPGGL 208
Query: 207 LFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVN 265
F+PLG G + +K+ + KE+KNGRLAMLA++G + Q TG GP NLL HLADP +
Sbjct: 209 WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADPGH 268
Query: 266 NNVLTSL 272
V +
Sbjct: 269 ATVFAAF 275
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 105/268 (39%), Positives = 143/268 (53%), Gaps = 24/268 (8%)
Query: 12 TSSVETARQILGARSAQSPTGSSRK-GSFVV----RAASTPPVKQGADRPLWFASKQSLS 66
T S + +LG+ A +G K SF R+++T DRPLWF
Sbjct: 17 TPSSQKNGSLLGSTKASFLSGRKLKVNSFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPP 76
Query: 67 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125
+LDGSLPGD+GFDPLGL SDPE +W E+++ R+AMLGA G PE L K
Sbjct: 77 WLDGSLPGDFGFDPLGLGSDPESL------RWNVQAELVHCRWAMLGAAGIFIPEFLTKI 130
Query: 126 GLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ 185
G++ +W+ AG Y+ D TLFV+E+ +G+AE RR+ D PG +
Sbjct: 131 GIL---NTPSWYT------AGELEYFTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTD 181
Query: 186 YFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQ 244
K G D YPGG F+PLG G + +K+ + KE+KNGRLAMLA++G + Q
Sbjct: 182 PIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 239
Query: 245 GLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ TG GP NL HLADP + + +
Sbjct: 240 HIYTGTGPIDNLFAHLADPGHATIFAAF 267
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 148/269 (55%), Gaps = 23/269 (8%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQS 64
A VS+ +++V A +P+ +R+ S A+S+P K A + W S
Sbjct: 2 ATVSTQASAAVFRPCAYKSRFLAGAPSKLNRELSIKPMASSSPSFKVEAKKGEWLPGLPS 61
Query: 65 LSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILG 123
SYL+GSLPGD GFDPLGL+ DPE +W E++NGR+AMLG G + PE+
Sbjct: 62 PSYLNGSLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVFT 115
Query: 124 KAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMG 183
K G+I A W+ AG Y+A TLFV+E L + E RR+QD NPG +
Sbjct: 116 KIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVN 166
Query: 184 RQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV 243
+ F++Y + YPGG +FNPL ++ K KE+ NGRLAMLA LG+ +
Sbjct: 167 QDPI--FKQYSLPPNECGYPGG-IFNPLNFAPTIEA----KEKELANGRLAMLAFLGFVI 219
Query: 244 QGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
Q VTG GP+ NLL H++DP +N ++ +
Sbjct: 220 QHNVTGKGPFDNLLQHISDPWHNTIVQTF 248
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 130/231 (56%), Gaps = 19/231 (8%)
Query: 44 ASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGE 102
AS V DRP+WF +LDGSLPGD+GFDPLGLS DP+ KW E
Sbjct: 41 ASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSL------KWNVQAE 94
Query: 103 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEM 162
+++ R+AMLGA G PE L K G++ +W+ AG Y+ D TLFV+E+
Sbjct: 95 LVHCRWAMLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDKTTLFVVEL 145
Query: 163 ALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MK 221
L+G+AE RR+ D PGS+ K G D YPGG F+PLG G + +K
Sbjct: 146 ILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKLK 203
Query: 222 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ + KE+KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 204 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 254
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 143/265 (53%), Gaps = 28/265 (10%)
Query: 10 SLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLD 69
S +S + R+ L S +P G+ + S V A + P DRPLWF +LD
Sbjct: 40 STKASFLSGRK-LKVNSFTAPVGA--RSSTTVCAVAEP------DRPLWFPGSTPPPWLD 90
Query: 70 GSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLI 128
GSLPGD+GFDPLGL SDPE +W E+++ R+AMLGA G PE L K G++
Sbjct: 91 GSLPGDFGFDPLGLGSDPESL------RWNVQAELVHCRWAMLGAAGIFIPEFLTKIGIL 144
Query: 129 PQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFL 188
+W+ AG Y+ D TLFV+E+ +G+AE RR+ D PG +
Sbjct: 145 ---NTPSWYT------AGELEYFTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIF 195
Query: 189 GFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
K G D YPGG F+PLG G + +K+ + KE+KNGRLAMLA++G + Q +
Sbjct: 196 PNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIY 253
Query: 248 TGVGPYQNLLDHLADPVNNNVLTSL 272
TG GP NL HLADP + + +
Sbjct: 254 TGTGPIDNLFAHLADPGHATIFAAF 278
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 149/273 (54%), Gaps = 23/273 (8%)
Query: 5 ALVSSSLTS--SVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASK 62
AL S++L+S + E ++ R+ + + R + + S DRPLWF
Sbjct: 4 ALSSTALSSLPNREIRQKGFPERTPTCLSLTRRTIANATKGVSAVCEPLPPDRPLWFPGS 63
Query: 63 QSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEI 121
+LDGSLPGD+GFDPLGL SDPE KW A E+++ R+AML G + PE+
Sbjct: 64 SPPEWLDGSLPGDFGFDPLGLGSDPELL------KWFAQAELMHSRWAMLAVFGILVPEL 117
Query: 122 LGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGS 181
L + G I +W+ AGT Y+ DP TLFV++M LMG+ E RR+ D NPGS
Sbjct: 118 LERIGYIEN---FSWYD------AGTREYFVDPTTLFVVQMGLMGWVEGRRWADIVNPGS 168
Query: 182 MGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
+ + D YPGG F+P+ G G E M + KE+KNG LAMLA +
Sbjct: 169 VDIEP--KVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMV-LRTKEIKNGGLAMLAFV 225
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
G++ Q + TG GP +NL+ HLADP + N+ ++
Sbjct: 226 GFWFQAIYTGEGPIENLMAHLADPGHCNIFSAF 258
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 127/221 (57%), Gaps = 19/221 (8%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
+RP+WF +LDGSLPGD+GFDPLGLS DPE KW E+++ R+AMLG
Sbjct: 50 ERPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPESL------KWNVQAEIVHCRWAMLG 103
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
A G PE L K G++ +W+ AG Y+ D TLFV+E+ L+G+AE RR
Sbjct: 104 AAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDKTTLFVVELILIGWAEGRR 154
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MKDFKLKEVKNG 231
+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+KNG
Sbjct: 155 WADIIKPGSVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNG 212
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
RLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 213 RLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 253
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 131/236 (55%), Gaps = 21/236 (8%)
Query: 41 VRAASTPPVKQGAD--RPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKW 97
V A T PV AD RPLWF +LDGSLPGD+GFDPLGL SDPE +W
Sbjct: 50 VVAPRTVPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RW 103
Query: 98 LAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTL 157
E+++ R+AMLGA G PE L K G++ +W+ AG Y+ D TL
Sbjct: 104 NQQAELVHCRWAMLGAAGIFIPEFLTKIGIL---NTPSWYT------AGELEYFTDTTTL 154
Query: 158 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-D 216
F++E+ +G+AE RR+ D PG + K G D YPGG F+PLG G
Sbjct: 155 FIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGS 212
Query: 217 EKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ +K+ + KE+KNGRLAMLA++G + Q + TG GP NL HLADP + V +
Sbjct: 213 PEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAF 268
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 133/239 (55%), Gaps = 25/239 (10%)
Query: 36 KGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIE 94
+ SF VRAA+ +DRP+WF +LDGSLPGD+GFDP GL SDPE
Sbjct: 52 RPSFAVRAAAD------SDRPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESL----- 100
Query: 95 PKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP 154
+W E+++ R+AMLGA G PE L K G++ W+ AG Y+ D
Sbjct: 101 -RWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVL---NTPFWYT------AGEQQYFTDT 150
Query: 155 YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG 214
TLF++E+ L+G+AE RR+ D PGS+ K G D YPGG F+PLG G
Sbjct: 151 TTLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGT--DVGYPGGLWFDPLGWG 208
Query: 215 K-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ +K+ + KE+KNGRLAMLA++G + Q TG GP NL HLADP + + +
Sbjct: 209 SGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF 267
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 133/239 (55%), Gaps = 25/239 (10%)
Query: 36 KGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIE 94
+ SF VRAA+ P +RP+WF +LDGSLPGD+GFDP GL SDPE
Sbjct: 42 RPSFAVRAAADP------NRPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESL----- 90
Query: 95 PKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP 154
+W E+++ R+AMLGA G PE L K G++ W+ AG Y+ D
Sbjct: 91 -RWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVL---NTPFWYT------AGEQQYFTDT 140
Query: 155 YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG 214
TLF++E+ L+G+AE RR+ D PGS+ K G D YPGG F+PLG G
Sbjct: 141 TTLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGT--DVGYPGGLWFDPLGWG 198
Query: 215 K-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ +K+ + KE+KNGRLAMLA++G + Q TG GP NL HLADP + + +
Sbjct: 199 SGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF 257
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 135/242 (55%), Gaps = 26/242 (10%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGG 91
++ + SF V AA+ DRP+WF +LDGSLPGD+GFDP GL SDPE
Sbjct: 42 AAARPSFAVSAAA-------PDRPIWFPGSVPPPWLDGSLPGDFGFDPFGLGSDPESL-- 92
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYW 151
+W E+++ R+AMLGA G PE L K G++ + +W+ AG Y+
Sbjct: 93 ----RWNVQAELVHCRWAMLGAAGIFIPEFLTKIGIL---STPSWYT------AGEQQYF 139
Query: 152 ADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL 211
D TLF++E+ L+G+AE RR+ D PG + K G D YPGG F+PL
Sbjct: 140 TDTTTLFIIELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPL 197
Query: 212 GLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
G G + +K+ + KE+KNGRLAMLA++G + Q TG GP NL HLADP + N+
Sbjct: 198 GWGSGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHANIFQ 257
Query: 271 SL 272
+
Sbjct: 258 AF 259
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 143/268 (53%), Gaps = 24/268 (8%)
Query: 12 TSSVETARQILGARSAQSPTGSSRK-GSFVV----RAASTPPVKQGADRPLWFASKQSLS 66
T S + +LG+ A +G K +F R+++T DRPLWF
Sbjct: 17 TPSSQKNGSLLGSTKASFLSGRKLKVNNFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPP 76
Query: 67 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125
+LDGSLPGD+GFDPLGL SDPE +W E+++ R+AMLGA G PE L K
Sbjct: 77 WLDGSLPGDFGFDPLGLASDPESL------RWNVQAELVHCRWAMLGAAGIFIPEFLTKI 130
Query: 126 GLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ 185
G++ +W+ AG Y+ D TLF++E+ +G+AE RR+ D PG +
Sbjct: 131 GIL---NTPSWYT------AGELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTD 181
Query: 186 YFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQ 244
K G D YPGG F+PLG G + +K+ + KE+KNGRLAMLA++G + Q
Sbjct: 182 PIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 239
Query: 245 GLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ TG GP NL HLADP + + +
Sbjct: 240 HIYTGTGPIDNLFAHLADPGHATIFAAF 267
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 131/221 (59%), Gaps = 19/221 (8%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DRPLWF +LDGSLPG++GFDPLGL SDPE KWLA E+++ R+AMLG
Sbjct: 61 DRPLWFPGSSPPEWLDGSLPGNFGFDPLGLGSDPELL------KWLAQAELMHARWAMLG 114
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
G + PEIL K G + +W+ AG+ Y+ADP TLF++++ALMG+ E RR
Sbjct: 115 VSGILIPEILEKIGYV---KNFSWYN------AGSVEYFADPTTLFIVQLALMGWVEGRR 165
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNG 231
+ D NPGS+ + L D YPGG F+P+ G+ + + + KE+KNG
Sbjct: 166 WADIVNPGSVDIEPKL--PNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNG 223
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
RLAMLA LG+ Q + G P NL+ HLADP + N+ ++
Sbjct: 224 RLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAF 264
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 130/233 (55%), Gaps = 19/233 (8%)
Query: 42 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAY 100
R+++T DRPLWF +LDGSLPGD+GFDPLGL SDPE +W
Sbjct: 63 RSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWNVQ 116
Query: 101 GEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVL 160
E+++ R+AMLGA G PE L K G++ +W+ AG Y+ D TLF++
Sbjct: 117 AELVHCRWAMLGAAGIFIPEFLTKIGIL---NTPSWYT------AGELEYFTDTTTLFIV 167
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKS 219
E+ +G+AE RR+ D PG + K G D YPGG F+PLG G +
Sbjct: 168 ELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEK 225
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+K+ + KE+KNGRLAMLA++G + Q + TG GP NL HLADP + + +
Sbjct: 226 IKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 278
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 133/237 (56%), Gaps = 26/237 (10%)
Query: 38 SFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPK 96
SF VRAA+ +RP+WF +LDGSLPGD+GFDP GL SDPE +
Sbjct: 43 SFAVRAAA-------PERPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESL------R 89
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYT 156
W E+++ R+AMLGA G PE+L K G++ +W+ AG Y+AD T
Sbjct: 90 WNVQAELVHCRWAMLGAAGIFIPELLTKIGIL---NTPSWYT------AGEQTYFADTTT 140
Query: 157 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK- 215
LF++E+ L+G+AE RR+ D PG + K G D YPGG F+PLG G
Sbjct: 141 LFIVELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGYGSG 198
Query: 216 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ +K+ + KE+KNGRLAMLA++G + Q TG GP NL HLADP + + +
Sbjct: 199 SPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFRAF 255
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 136/248 (54%), Gaps = 18/248 (7%)
Query: 27 AQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP 86
A S R G+F R A Q A RP+WF ++LDGSL GDYGFDPL L
Sbjct: 2 ALSMIAQRRAGAFSARQAPRAVRAQAAVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQE 61
Query: 87 EGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGL-IPQETALAWFQTG-VIPP 144
T KW E+++GR+AMLGA G I I K GL P+ W+ G V+
Sbjct: 62 PQT-----LKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPE-----WYDAGKVVVE 111
Query: 145 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 204
++ TL V++ LMG+AE +R+ D+ NPGS FLGF + G + YPG
Sbjct: 112 KNNIDF----PTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGL-ENGYPG 166
Query: 205 GPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
G F+P+GL + D +++K KEVKNGRLAM+A LG+ Q TG GP NL DHLADP
Sbjct: 167 GRFFDPMGLSRGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADP 226
Query: 264 VNNNVLTS 271
+ N T+
Sbjct: 227 NHVNFATN 234
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 136/248 (54%), Gaps = 18/248 (7%)
Query: 27 AQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP 86
A S R G+F R A Q A RP+WF ++LDGSL GDYGFDPL L
Sbjct: 2 ALSMIAQRRAGAFSARQAPRAVRAQAAVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQE 61
Query: 87 EGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGL-IPQETALAWFQTG-VIPP 144
T KW E+++GR+AMLGA G I I K GL P+ W+ G V+
Sbjct: 62 PQT-----LKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPE-----WYDAGKVVVE 111
Query: 145 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 204
++ TL V++ LMG+AE +R+ D+ NPGS FLGF + G + YPG
Sbjct: 112 KNNIDF----PTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGL-ENGYPG 166
Query: 205 GPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
G F+P+GL + D +++K KEVKNGRLAM+A LG+ Q TG GP NL DHLADP
Sbjct: 167 GRFFDPMGLSRGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADP 226
Query: 264 VNNNVLTS 271
+ N T+
Sbjct: 227 NHVNFATN 234
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 135/242 (55%), Gaps = 26/242 (10%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGG 91
++ + SF VRAA+ +RP+WF +LDGSLPGD+GFDP GL SDPE
Sbjct: 35 AASRTSFAVRAAA-------PERPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESL-- 85
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYW 151
+W E+++ R+AMLGA G PE+L K G++ +W+ AG Y+
Sbjct: 86 ----RWNVQAELVHCRWAMLGAAGIFIPELLTKIGIL---NTPSWYT------AGEQEYF 132
Query: 152 ADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL 211
D TLF++E+ L+G+AE RR+ D PG + K G D YPGG F+PL
Sbjct: 133 TDTTTLFIVELILIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPL 190
Query: 212 GLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
G G + +K+ + KE+KNGRLAMLA++G + Q TG GP NL HLADP + +
Sbjct: 191 GYGTGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFR 250
Query: 271 SL 272
+
Sbjct: 251 AF 252
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 127/226 (56%), Gaps = 19/226 (8%)
Query: 49 VKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGR 107
V DRPLWF +LDGSLPGD+GFDPLGL SDPE +W E+++ R
Sbjct: 58 VAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETL------RWNVQAELVHCR 111
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGF 167
+AMLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+
Sbjct: 112 WAMLGAAGIFIPEFLTKIGIL---NTPSWYT------AGELEYFTDTTTLFIVELFFIGW 162
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLK 226
AE RR+ D PG + K G D YPGG F+PLG G + +K+ + K
Sbjct: 163 AEGRRWADILKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTK 220
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
E+KNGRLAMLA++G + Q + TG GP NL HLADP + V ++
Sbjct: 221 EIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFSAF 266
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 138/245 (56%), Gaps = 23/245 (9%)
Query: 29 SPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPE 87
SP+ +R+ +F ++S K A + W S +YL+GSLPGD GFDPLGL+ DPE
Sbjct: 26 SPSKLNREVAFKPMSSSPASFKVEAKKGEWLPGLPSPAYLNGSLPGDNGFDPLGLAEDPE 85
Query: 88 GTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGT 147
KW E++NGR+AMLG G + PE+ K G+I W+ AG
Sbjct: 86 NL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NVPKWYD------AGK 130
Query: 148 YNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
Y+A TLFV+E L + E RR+QD NPGS+ + F++Y + YPGG +
Sbjct: 131 EEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPPNEVGYPGG-I 187
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
FNPL ++ K KE+ NGRLAMLA LG+ +Q VTG GP+ NLL HL+DP +N
Sbjct: 188 FNPLNFAPTLEA----KEKELANGRLAMLAFLGFVIQHNVTGKGPFDNLLQHLSDPWHNT 243
Query: 268 VLTSL 272
++ +
Sbjct: 244 IIQTF 248
>gi|297598774|ref|NP_001046200.2| Os02g0197600 [Oryza sativa Japonica Group]
gi|49388158|dbj|BAD25286.1| chlorophyll a/b-binding protein type III precursor-like protein
[Oryza sativa Japonica Group]
gi|49388343|dbj|BAD25453.1| chlorophyll a/b-binding protein type III precursor-like protein
[Oryza sativa Japonica Group]
gi|255670690|dbj|BAF08114.2| Os02g0197600 [Oryza sativa Japonica Group]
Length = 171
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/131 (68%), Positives = 104/131 (79%), Gaps = 11/131 (8%)
Query: 1 MATQALVSSSLTSSVETARQILGA--RSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW 58
MA QAL+S RQ+LG +S+ S + SSRK F+VRA +TPP KQGADR LW
Sbjct: 1 MAAQALLS---------GRQLLGRPLQSSVSRSSSSRKAPFMVRAEATPPAKQGADRQLW 51
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
FASKQSLSYLDG+LPGD+GFDPLGLSDPEGTGGFIEP+WLAYGEV NGR AM+G VG +A
Sbjct: 52 FASKQSLSYLDGTLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEVFNGRTAMMGVVGMVA 111
Query: 119 PEILGKAGLIP 129
PE+LGK GL+P
Sbjct: 112 PELLGKLGLVP 122
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 128/222 (57%), Gaps = 21/222 (9%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DRPLWF +LDGSLPGD+GFDPLGL SDPE KW A E+++ R+AML
Sbjct: 59 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETL------KWFAQAELMHARWAMLA 112
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
G + PE GLI +W+ AG+ Y+ADP TL V ++ALMG+ E RR
Sbjct: 113 VAGILLPEWFESLGLIQN---FSWYD------AGSREYFADPTTLLVAQLALMGWVEGRR 163
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKEVKN 230
+ D NPGS+ L +K D YPGG F+P+ G G E M + KE+KN
Sbjct: 164 WADLVNPGSVDVDLKLPHKK--KAKADVGYPGGFWFDPMMWGRGSPEPVMV-LRTKEIKN 220
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
GRLAMLA +G + Q + TG GP +NL H+ADP + N+ ++
Sbjct: 221 GRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAF 262
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 128/222 (57%), Gaps = 21/222 (9%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DRPLWF +LDGSLPGD+GFDPLGL SDPE KW A E+++ R+AML
Sbjct: 59 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPETL------KWFAQAELMHARWAMLA 112
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
G + PE GLI +W+ AG+ Y+ADP TL V ++ALMG+ E RR
Sbjct: 113 VAGILLPEWFESLGLIQN---FSWYD------AGSREYFADPTTLLVAQLALMGWVEGRR 163
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKEVKN 230
+ D NPGS+ L +K D YPGG F+P+ G G E M + KE+KN
Sbjct: 164 WADLVNPGSVDVDLKLPHKK--KAMADVGYPGGFWFDPMMWGRGSPEPVMV-LRTKEIKN 220
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
GRLAMLA +G + Q + TG GP +NL H+ADP + N+ ++
Sbjct: 221 GRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAF 262
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 148/273 (54%), Gaps = 27/273 (9%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA+ ++ + S++S+V + G S T SR S+ +K A + W
Sbjct: 1 MASVSMQAMSVSSAVCKTSFLSGTSS----TRFSRNVQVAAAPISSQSLKVEAKKGEWLP 56
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S +YL+GSL GD GFDPLGL+ DP W E+ NGR+AMLG G + P
Sbjct: 57 GLPSPAYLNGSLAGDNGFDPLGLAEDPAAL------NWYVQAELQNGRWAMLGVAGMLVP 110
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
E+L K GLI A W+ AG Y+A TLFV+E L + E RR+QD P
Sbjct: 111 EVLTKIGLI---NAPLWYD------AGKVEYFAPASTLFVIEFILFHYVEIRRWQDIKYP 161
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
GS+ + F F+ Y GD YPGG +FNPL ++ ++K KE+ NGRLAMLA L
Sbjct: 162 GSVSQDPF--FKSYKLPPGDVGYPGG-IFNPLKFPANQ----EYKEKEIANGRLAMLAFL 214
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
G VQ +TG GP++NLL HLADP + ++ +L
Sbjct: 215 GMLVQSKLTGAGPFENLLTHLADPWHTTIVQTL 247
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 126/212 (59%), Gaps = 19/212 (8%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DRPLWF +LDGSLPGD+GFDPLGL SDPE KWLA E+++ R+AMLG
Sbjct: 61 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELL------KWLAQAELMHARWAMLG 114
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
G + PEIL K G + +W+ AG+ Y+ADP TLF++++ALMG+ E RR
Sbjct: 115 VSGILIPEILEKIGYV---KNFSWYN------AGSVEYFADPTTLFIVQLALMGWVEGRR 165
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNG 231
+ D NPGS+ + L D YPGG F+P+ G+ + + + KE+KNG
Sbjct: 166 WADIVNPGSVDIEPKL--PNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNG 223
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
RLAMLA LG+ Q + G P NL+ HLADP
Sbjct: 224 RLAMLAFLGFCFQAVYVGGSPIDNLMAHLADP 255
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 126/221 (57%), Gaps = 19/221 (8%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
+RP+WF +LDGSLPGD+GFDPLGLS DP+ KW E+++ R+AMLG
Sbjct: 50 ERPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSL------KWNVQAEIVHCRWAMLG 103
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
A G PE L K G++ +W+ AG Y+ D TLFV+E+ L+G+AE RR
Sbjct: 104 AAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFTDKTTLFVVELILIGWAEGRR 154
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS-MKDFKLKEVKNG 231
+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+KNG
Sbjct: 155 WADIIKPGSVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNG 212
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
RL MLA++G + Q + TG GP NL HLADP + + +
Sbjct: 213 RLTMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 253
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 124/221 (56%), Gaps = 19/221 (8%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DRPLWF +LDG+LPGD+GFDPLGL SDPE +W E+++ R+AMLG
Sbjct: 61 DRPLWFPGSTPPPWLDGTLPGDFGFDPLGLGSDPESL------RWNVQAELVHCRWAMLG 114
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
A G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE RR
Sbjct: 115 AAGIFIPEFLTKIGVL---NTPSWYS------AGELEYFTDTTTLFIVELFFIGWAEGRR 165
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNG 231
+ D PG + K G D YPGG F+PLG G + +KD + KE+KNG
Sbjct: 166 WADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIKNG 223
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
RLAMLA++G + Q + T GP NL HLADP + + +
Sbjct: 224 RLAMLAVMGAWFQHIYTATGPIDNLFAHLADPGHATIFAAF 264
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 141/260 (54%), Gaps = 26/260 (10%)
Query: 17 TARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGAD---RPLWFASKQSLSYLDGSLP 73
TAR + A S + S + R A+ P ++ + W S +YLDGSLP
Sbjct: 5 TARAPVAALRPSSSSAFLGHSSRLGRTATASPTRRSLKAEAKGEWLPGLPSPAYLDGSLP 64
Query: 74 GDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQET 132
GD GFDPLGL+ DPE +W E++NGR+AMLG G + PE+L KAGLI
Sbjct: 65 GDNGFDPLGLAEDPENL------RWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLI---N 115
Query: 133 ALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK 192
A W+ AG Y+A TLFV+E L + E RR+QD NPGS+ + F+
Sbjct: 116 APQWYD------AGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKS 167
Query: 193 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252
Y + YPG +FNPL ++ K KE+ NGRLAMLA L + +Q VTG GP
Sbjct: 168 YSLPPHECGYPGS-VFNPLNFAPTLEA----KEKELANGRLAMLAFLAFLIQHNVTGKGP 222
Query: 253 YQNLLDHLADPVNNNVLTSL 272
+ NLL HL+DP +N ++ +L
Sbjct: 223 FDNLLQHLSDPWHNTIIQTL 242
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 136/248 (54%), Gaps = 18/248 (7%)
Query: 27 AQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP 86
A S R G+F R A Q RP+WF + ++LDG+L GDYGFDPL L
Sbjct: 2 ALSMIAQRRAGAFSARQAPRAVRAQALTRPVWFPGNPAPAHLDGTLAGDYGFDPLFLGQE 61
Query: 87 EGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGL-IPQETALAWFQTG-VIPP 144
+ T +W E+++GR+AMLGA G I I K GL P+ W+ G V+
Sbjct: 62 KET-----LRWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPE-----WYDAGKVVVE 111
Query: 145 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 204
++ TL V++ LMG+AE +R+ D+ NPGS FLGF + G + YPG
Sbjct: 112 KNNIDF----PTLIVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGL-ENGYPG 166
Query: 205 GPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
G F+P+GL + D ++K KEVKNGRLAM+A LG+ Q TG GP NL DHLADP
Sbjct: 167 GRFFDPMGLSRGDAAKYAEYKQKEVKNGRLAMIACLGFAAQYAATGKGPLDNLSDHLADP 226
Query: 264 VNNNVLTS 271
+ N T+
Sbjct: 227 NHINFATN 234
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 135/252 (53%), Gaps = 33/252 (13%)
Query: 22 LGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPL 81
L A P G S SF V A K+G W S YL GSLPGD GFDPL
Sbjct: 30 LNREVAIRPMGCSPSASFKVEA------KKGE----WLPGLASPGYLTGSLPGDNGFDPL 79
Query: 82 GLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG 140
GL+ DPE KW E++NGR+AMLG G + PE+ G+I W+
Sbjct: 80 GLAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTNIGII---NVPKWYD-- 128
Query: 141 VIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
AG Y+A TLFV+E L + E RR+QD NPGS+ + F++Y G+
Sbjct: 129 ----AGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPKGEV 182
Query: 201 AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
YPGG +FNPL ++ K KE+ NGRLAMLA LG+ +Q VTG GP+ NLL HL
Sbjct: 183 GYPGG-IFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHL 237
Query: 261 ADPVNNNVLTSL 272
+DP +N ++ +L
Sbjct: 238 SDPWHNTIVQTL 249
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/267 (38%), Positives = 140/267 (52%), Gaps = 38/267 (14%)
Query: 7 VSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLS 66
+++ LT T R P G + K VR + A RP W + +
Sbjct: 9 LAAGLTQKSRTVR----------PRGVASKARASVRVGAV-----AAARPTWLPGSPAPA 53
Query: 67 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125
+LDG+LP DYGFDPL L +DPE KW E+++ R+AMLG G + PE+L K
Sbjct: 54 HLDGTLPCDYGFDPLNLGADPENL------KWFVQAELMHCRWAMLGLAGMVGPELLTKI 107
Query: 126 GL--IPQETALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMGFAEHRRFQDWANPGSM 182
G+ +P W AG ++ YW LF ++MA+M +AE RR+QD PG+M
Sbjct: 108 GMADLPN-----WID------AGKWDGYWLGAGPLFFVQMAMMNWAEVRRWQDMKAPGTM 156
Query: 183 GRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYF 242
G K + D YP G LF+P+G KD K ++ K KE+ NGRLAM+AI+G F
Sbjct: 157 NEDPLTGANKGDTNT-DVGYPKG-LFDPMGYAKDPKKAEELKRKEIANGRLAMVAIVGCF 214
Query: 243 VQGLVTGVGPYQNLLDHLADPVNNNVL 269
Q + TG GP NL HLADP +NN+
Sbjct: 215 AQAISTGTGPVDNLFTHLADPGHNNIF 241
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/268 (39%), Positives = 142/268 (52%), Gaps = 25/268 (9%)
Query: 15 VETARQILGARSAQSPTGSSRKGSFVV----RAASTPPVKQGADRPLWFASKQSLSYLDG 70
V+ A Q ++ SPTG VV + S+ DRPLWF +LDG
Sbjct: 20 VQNATQRRPLVASASPTGGRMSERLVVARAGKEVSSVCEPLPPDRPLWFPGSAPPEWLDG 79
Query: 71 SLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIP 129
SLPGD+GFDPLGL SDP+ KW A E+I+ R+AML G + PE L + G I
Sbjct: 80 SLPGDFGFDPLGLGSDPDTL------KWFAQAELIHSRWAMLAVTGILIPECLERLGFIE 133
Query: 130 QETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
+W++ AG+ Y+AD TLFV +M LMG+AE RR+ D PGS+ +
Sbjct: 134 N---FSWYE------AGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEP--K 182
Query: 190 FEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
+ + D YPGG F+ + G G E M + KE+KNGRLAMLA +G+ Q
Sbjct: 183 YPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMV-LRTKEIKNGRLAMLAFVGFCFQATY 241
Query: 248 TGVGPYQNLLDHLADPVNNNVLTSLKFH 275
T P +NL+ HLADP + NV ++ H
Sbjct: 242 TSQDPIENLMAHLADPGHCNVFSAFTSH 269
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 150/282 (53%), Gaps = 27/282 (9%)
Query: 1 MATQALVSSSL-----TSSVETARQILGARS---AQSPTGSSRKGSFVVRAASTPPVKQG 52
MAT SS++ +S+ + +I+ A++ A P + + +A +
Sbjct: 1 MATAVCASSTIAVAPSSSAQKKPNEIVSAKTTFLAGRPLRNKAHVAKAAKAVFSVTAAAA 60
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAML 111
+RPLWF ++LDGSLP D+GFDPLGL S+PE KW E+++ R+AML
Sbjct: 61 TERPLWFPGSTPPAWLDGSLPADFGFDPLGLGSEPELL------KWFVQSEIVHSRWAML 114
Query: 112 GAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHR 171
GA G PE L K G++ W+ AG Y+ D TLF++EM L+G+AE R
Sbjct: 115 GAAGIFIPEALTKLGIL---NTPFWYT------AGEQEYFTDQTTLFIVEMILLGWAEGR 165
Query: 172 RFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKN 230
R+ D PGS+ K G D YPGG F+P G G + +K+ + KE+KN
Sbjct: 166 RWADILKPGSVNTDPVFPNNKLTGT--DVGYPGGFWFDPFGWGTASPEKLKELRTKEIKN 223
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
GRLAMLA++G + Q + TG P NLL HLADP + + ++
Sbjct: 224 GRLAMLAVMGAWFQAVYTGARPIDNLLAHLADPGHATIFSAF 265
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 138/250 (55%), Gaps = 29/250 (11%)
Query: 31 TGSS----RKGSF--VVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS 84
TGSS R SF + +A T K A + W S YL GSL GD GFDPLGL+
Sbjct: 24 TGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLA 83
Query: 85 -DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIP 143
DPE KW E++NGR+AMLG G + PE+ K G+I W+
Sbjct: 84 EDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NVPEWYD----- 129
Query: 144 PAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYP 203
AG Y+A TLFV+E L + E RR+QD NPGS+ + F++Y G+ YP
Sbjct: 130 -AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYP 186
Query: 204 GGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
GG +FNPL +++ K KE+ NGRLAMLA LG+ VQ VTG GP++NLL HL+DP
Sbjct: 187 GG-IFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDP 241
Query: 264 VNNNVLTSLK 273
+N ++ +
Sbjct: 242 WHNTIVQTFN 251
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 126/221 (57%), Gaps = 19/221 (8%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
+RPLWF ++LDGSLP D+GFDPLGL S+PE KW E+++ R+AMLG
Sbjct: 62 ERPLWFPGSTPPAWLDGSLPADFGFDPLGLGSEPELL------KWFVQSEIVHSRWAMLG 115
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
A G PE L K G++ W+ AG Y+ D TLF++EM L+G+AE RR
Sbjct: 116 AAGIFIPEALTKLGIL---NTPFWYT------AGEQEYFTDQTTLFIVEMILLGWAEGRR 166
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNG 231
+ D PGS+ K G D YPGG F+P G G + +K+ + KE+KNG
Sbjct: 167 WADILKPGSVNTDPVFPNNKLTGT--DVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNG 224
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
RLAMLA++G + Q + TG P NLL HLADP + + ++
Sbjct: 225 RLAMLAVMGAWFQAVYTGARPIDNLLAHLADPGHATIFSAF 265
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 139/249 (55%), Gaps = 28/249 (11%)
Query: 31 TGSSRK--GSFVVRAASTPP---VKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS- 84
TGSS K +R PP K A + W S +YL+G+LPGD GFDPLGL+
Sbjct: 24 TGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPTYLNGTLPGDNGFDPLGLAE 83
Query: 85 DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPP 144
DPE +W E++NGR+AMLG G + PE+ K G+I A W+
Sbjct: 84 DPENL------RWYVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NAPQWYD------ 128
Query: 145 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 204
AG Y+A TLFV+E L + E RR+QD NPGS+ + F++Y + YPG
Sbjct: 129 AGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPQHECGYPG 186
Query: 205 GPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 264
+FNPL ++ K KE+ NGRLAMLA LG+ VQ VTG GP++NLL HL+DP
Sbjct: 187 S-VFNPLNFAPTLEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHLSDPW 241
Query: 265 NNNVLTSLK 273
+N ++ +++
Sbjct: 242 HNTIINTIR 250
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 136/245 (55%), Gaps = 33/245 (13%)
Query: 30 PTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEG 88
PT SS +F V A K+G W S +YLDGSLPGD GFDPLGL+ DPE
Sbjct: 38 PTTSSIPNAFKVEA------KKGE----WLPGLPSPTYLDGSLPGDNGFDPLGLAEDPEN 87
Query: 89 TGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTY 148
+W E++NGR+AMLG G + PE+L G+I W+ AG
Sbjct: 88 L------RWYTQAELVNGRWAMLGVAGMVLPEVLTNYGII---NVPKWYD------AGKA 132
Query: 149 NYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLF 208
Y+A TLFV+E L + E RR+QD NPGS+ + F++Y D YPGG +F
Sbjct: 133 EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPPNDVGYPGG-IF 189
Query: 209 NPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
NPL + + + KE+ NGRLAMLA LG+ VQ VTG GP+ N + H++DP +N +
Sbjct: 190 NPLNF----EPTLEAREKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFMQHISDPWHNTI 245
Query: 269 LTSLK 273
+ +L+
Sbjct: 246 VQTLR 250
>gi|40455722|gb|AAR85970.1| type III chlorophyll a/b-binding protein [Nicotiana tabacum]
Length = 85
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/85 (90%), Positives = 80/85 (94%)
Query: 191 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
EK LGGSGDPAYPGGP FNPLG GKDEKSMKD KLKEVKNGRLAMLAILGYF+QGLVTGV
Sbjct: 1 EKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGYFIQGLVTGV 60
Query: 251 GPYQNLLDHLADPVNNNVLTSLKFH 275
GPYQNLLDHLADPVNNN+LT+ KFH
Sbjct: 61 GPYQNLLDHLADPVNNNILTNFKFH 85
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 132/244 (54%), Gaps = 33/244 (13%)
Query: 30 PTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEG 88
P+ SS SF V A K+G W S YLDGSLPGD GFDPLGL+ DPE
Sbjct: 38 PSTSSSYNSFKVEA------KKGQ----WLPGLASPDYLDGSLPGDNGFDPLGLAEDPEN 87
Query: 89 TGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTY 148
KW E++NGR+AMLG G + PE+ G++ W+ AG
Sbjct: 88 L------KWFIQAELVNGRWAMLGVAGMLLPEVFTSIGIL---NVPKWYD------AGKS 132
Query: 149 NYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLF 208
Y+A TLFV+E L + E RR+QD NPGS+ + F+ Y YPGG +F
Sbjct: 133 EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKSYSLPPNKCGYPGG-IF 189
Query: 209 NPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
NPL E++ K KE+ NGRLAMLA LG+ VQ VTG GP+ NLL HL DP +N +
Sbjct: 190 NPLNFAPTEEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLFDPWHNTI 245
Query: 269 LTSL 272
+ +L
Sbjct: 246 IQTL 249
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 126/225 (56%), Gaps = 21/225 (9%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DRPLWF +LDGSLPGD+GFDPLGL SDP+ KW A E+I+ R+AML
Sbjct: 64 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTL------KWFAQAELIHSRWAMLA 117
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
G I PE L + G I +W+ AG+ Y+AD TLFV +M LMG+AE RR
Sbjct: 118 VTGIIIPECLERLGFIEN---FSWYD------AGSREYFADSTTLFVAQMVLMGWAEGRR 168
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKEVKN 230
+ D PGS+ + + + D YPGG F+ + G G E M + KE+KN
Sbjct: 169 WADLIKPGSVDIEP--KYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMV-LRTKEIKN 225
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
GRLAMLA LG+ Q T P +NL+ HLADP + NV ++ H
Sbjct: 226 GRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 126/225 (56%), Gaps = 21/225 (9%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DRPLWF +LDGSLPGD+GFDPLGL SDP+ KW A E+I+ R+AML
Sbjct: 64 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTL------KWFAQAELIHSRWAMLA 117
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
G I PE L + G I +W+ AG+ Y+AD TLFV +M LMG+AE RR
Sbjct: 118 VTGIIIPECLERLGFIEN---FSWYD------AGSREYFADSTTLFVAQMVLMGWAEGRR 168
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKEVKN 230
+ D PGS+ + + + D YPGG F+ + G G E M + KE+KN
Sbjct: 169 WADLIKPGSVDIEP--KYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMV-LRTKEIKN 225
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
GRLAMLA LG+ Q T P +NL+ HLADP + NV ++ H
Sbjct: 226 GRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
>gi|307109464|gb|EFN57702.1| hypothetical protein CHLNCDRAFT_59626 [Chlorella variabilis]
Length = 249
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 110/265 (41%), Positives = 144/265 (54%), Gaps = 29/265 (10%)
Query: 11 LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDG 70
+ +S+ R LG S++ +R+ + VV AAS RPLW ++LDG
Sbjct: 1 MQASLAPTRVALGRTSSRV---QARRSAVVVYAAS---------RPLWQPGVTPPAHLDG 48
Query: 71 SLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIP 129
+LPGD+GFDPL L + E W E+ NGR+AMLG G I P L + GL+
Sbjct: 49 TLPGDFGFDPLNLGVNKEAL------DWYRNAELQNGRWAMLGVAGIIFPAELTRVGLL- 101
Query: 130 QETALAWFQTGVIPPAGTYNYWADPY-TLFVLEMALMGFAEHRRFQDWANPGSMGRQ-YF 187
W G + A + N A P+ +L +++ L F E +R++D PGS F
Sbjct: 102 --NVPDWADAGKVY-AESEN--AIPFASLLMVQFFLFNFVEIKRWEDIKKPGSQAEAGSF 156
Query: 188 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK-SMKDFKLKEVKNGRLAMLAILGYFVQGL 246
LGFE GSG YPGGP FNPLGLG K SM DFK +E++NGRLAM+A LG+ Q
Sbjct: 157 LGFESAFKGSGVSGYPGGP-FNPLGLGNSSKESMDDFKWREIRNGRLAMMAFLGFLAQHA 215
Query: 247 VTGVGPYQNLLDHLADPVNNNVLTS 271
TG GP NL DHLADP NN ++
Sbjct: 216 ATGKGPLDNLADHLADPWANNFCSN 240
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 131/243 (53%), Gaps = 26/243 (10%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGG 91
++ KG PP DRPLWF +LDGSLPGD+GFDPLGL SDPE
Sbjct: 75 NATKGGVSTVCEPLPP-----DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELL-- 127
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYW 151
KW A E+++ R+AML G + PE L G I WF AG Y+
Sbjct: 128 ----KWFAQAELMHSRWAMLAVAGILIPEWLESLGFIENYN---WFD------AGAREYF 174
Query: 152 ADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL 211
ADP TLF++++ LMG+ E RR+ D PG + + L D YPGG F+PL
Sbjct: 175 ADPTTLFIVQLVLMGWVEGRRWADMIKPGCVDIEPTL--PNKTKPKPDVGYPGGLWFDPL 232
Query: 212 --GLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
G G E M + KE+KNGRLAMLA +G+ Q + TG GP +NL+ H+ADP + N+
Sbjct: 233 MWGRGSPEPVMV-LRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHIADPGHCNIF 291
Query: 270 TSL 272
++
Sbjct: 292 SAF 294
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 137/248 (55%), Gaps = 28/248 (11%)
Query: 31 TGSSRKGSFVV--RAASTPP---VKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS- 84
TGSS K + V R PP K A + W S +YL+GSLPGD GFDPL L+
Sbjct: 24 TGSSGKLNREVAFRPMGCPPSTSFKVEAKKGEWLPGLASPNYLNGSLPGDNGFDPLALAE 83
Query: 85 DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPP 144
DPE KW E++NGR+A LG G + PE+L GLI W+
Sbjct: 84 DPENL------KWFVQAELVNGRWATLGVAGMLLPEVLTNIGLI---NVPKWYD------ 128
Query: 145 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 204
AG Y+A TLFV+E L + E RR+QD NPGS+ + F++Y + YPG
Sbjct: 129 AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPPNEVGYPG 186
Query: 205 GPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 264
G +FNPL E++ K +E+ NGRLAMLA LG+ VQ VTG GP+ NLL HL+DP
Sbjct: 187 G-IFNPLNFAPTEEA----KERELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPW 241
Query: 265 NNNVLTSL 272
+N ++ +L
Sbjct: 242 HNTIVQTL 249
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 136/244 (55%), Gaps = 30/244 (12%)
Query: 33 SSRKGSFVVRAASTPPVKQGAD---RPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEG 88
SSR G R A+ P ++ + W S +YLDGSLPGD GFDPLGL+ DPE
Sbjct: 33 SSRLG----RTATASPTRRSLKAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPEN 88
Query: 89 TGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTY 148
+W E++NGR+AMLG G + PE+L KAGLI A W+ AG
Sbjct: 89 L------RWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLI---NAPQWYD------AGKS 133
Query: 149 NYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLF 208
Y+A TLFV+E L + E RR+QD NPGS+ + F+ Y + YPG +F
Sbjct: 134 EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPGS-VF 190
Query: 209 NPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
NPL ++ K KE+ NGRLAMLA L + +Q VTG GP+ NLL HL+DP +N +
Sbjct: 191 NPLNFAPTLEA----KEKELANGRLAMLAFLAFLIQHNVTGKGPFDNLLQHLSDPWHNTI 246
Query: 269 LTSL 272
+ +L
Sbjct: 247 IQTL 250
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/260 (37%), Positives = 131/260 (50%), Gaps = 45/260 (17%)
Query: 41 VRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL----------------- 83
VR+ +T DRPLWF +LDGSLPGD+GFDPLGL
Sbjct: 49 VRSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLYNGGLIILAGNTNDHNI 108
Query: 84 ----------SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETA 133
SDPE KW E+++ R+AMLGA G PE L K G++
Sbjct: 109 NQSFGCDSTASDPESL------KWNVQAELVHCRWAMLGAAGIFIPEFLTKIGIL---NT 159
Query: 134 LAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKY 193
+W+ AG Y+ D TLF++E+ +G+AE RR+ D NPG + K
Sbjct: 160 PSWYT------AGEQEYFTDTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFPNNKL 213
Query: 194 LGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252
G D YPGG F+PLG G + +K+ + KE+KNGRLAMLA++G + Q + TG GP
Sbjct: 214 TGT--DVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 271
Query: 253 YQNLLDHLADPVNNNVLTSL 272
NL HLADP + + +
Sbjct: 272 IDNLFAHLADPGHATIFAAF 291
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 128/229 (55%), Gaps = 23/229 (10%)
Query: 45 STPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEV 103
+ P + A + W S YL+GSLPGD GFDPLGL+ DPE KW E+
Sbjct: 42 AVPAFRVSAKKGEWLPGLASPDYLNGSLPGDNGFDPLGLAEDPENL------KWFVQAEL 95
Query: 104 INGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMA 163
NGR+AMLG G + PE+ K G+I A W+ AG Y+A TLFV+E
Sbjct: 96 QNGRWAMLGVAGMLLPEVFTKIGII---NAPQWYD------AGKQEYFASSSTLFVIEFI 146
Query: 164 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
L + E RR+QD NPGS+ + F+ Y + YPGG +FNPL ++
Sbjct: 147 LFHYVEIRRWQDIKNPGSVNQDPI--FKSYRLPPNEVGYPGG-IFNPLNFAPSLEA---- 199
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
K KE+ NGRLAMLA LG+ +Q +TG GP+ NLL HL+DP +N ++ +L
Sbjct: 200 KEKEIANGRLAMLAFLGFLIQHNLTGKGPFDNLLQHLSDPWHNTIIQTL 248
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 103/246 (41%), Positives = 135/246 (54%), Gaps = 26/246 (10%)
Query: 31 TGSSRKGSFVVR---AASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DP 86
TGSS K + V + S K A + W S +YLDGSLPGD GFDPLGL+ DP
Sbjct: 24 TGSSGKLNREVSFRPSTSNNSFKVEAKKGEWLPGLASPAYLDGSLPGDNGFDPLGLAEDP 83
Query: 87 EGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG 146
E KW E++NGR+AMLG G + PE+ G++ W+ AG
Sbjct: 84 ENL------KWYIQAELVNGRWAMLGVAGMLLPEVFTSIGIL---NVPKWYD------AG 128
Query: 147 TYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGP 206
Y+A TLFV+E L + E RR+QD NPG + + F+ Y + YPGG
Sbjct: 129 KAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPI--FKNYSLPPNECGYPGG- 185
Query: 207 LFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNN 266
+FNPL E++ K KE+ NGRLAMLA LG+ VQ VTG GP+ NLL HL+DP +N
Sbjct: 186 IFNPLNFAATEEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHLSDPWHN 241
Query: 267 NVLTSL 272
++ +L
Sbjct: 242 TIIQTL 247
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 138/270 (51%), Gaps = 37/270 (13%)
Query: 7 VSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLS 66
+S+ LT T R P + K VR + A RP +F
Sbjct: 9 LSAGLTQRSRTVR----------PRSVASKARASVRVGAV-----AAARPNFFPGTTPPK 53
Query: 67 YLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAG 126
+LDG++PGDYGFDPLGL + + + +W E+ + R+AMLG G APE++
Sbjct: 54 HLDGTMPGDYGFDPLGLGEDK-----VALEWYKQAELQHARWAMLGVTGMAAPELIQNP- 107
Query: 127 LIPQETALAWFQTGVIPPAGTYNYW----ADPYTLFVLEMALMGFAEHRRFQDWANPGSM 182
F G +P W A P TLFV++M +M +AE RR+QD NPG+M
Sbjct: 108 ----------FVEGAMPNWAEAPLWDGYMASPNTLFVVQMFMMNWAEVRRWQDMKNPGTM 157
Query: 183 GRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYF 242
G K + D YP G LF+P+G+ KD + +K K+KE+ NGRLAM+A++G
Sbjct: 158 NEDPLTGANKG-DTNTDVGYPKG-LFDPMGMAKDPEKVKVLKVKEIANGRLAMVAVMGCI 215
Query: 243 VQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+Q TGVGP NL HLADP +N + T+
Sbjct: 216 IQNEATGVGPIANLKAHLADPAHNTIFTNF 245
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 136/242 (56%), Gaps = 19/242 (7%)
Query: 34 SRKGSFVVRAASTPPVK-QGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF 92
R+ +F V + V+ + A RP+WF ++LDGSL GDYGFDPL L T
Sbjct: 8 QRRAAFGVARQTPRSVRVKAATRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQEPQT--- 64
Query: 93 IEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGL-IPQETALAWFQTG-VIPPAGTYNY 150
KW E+++GR+AMLGA G I I K GL P+ W+ G V+ ++
Sbjct: 65 --LKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPE-----WYDAGKVVVEKNNIDF 117
Query: 151 WADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNP 210
TL + ++ LMG+AE +R+ D+ NPGS G FLGF G + YPGG F+P
Sbjct: 118 ----PTLLITQLYLMGWAETKRWYDFKNPGSQGDGSFLGFTDEFKGL-ENGYPGGRFFDP 172
Query: 211 LGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+GL + D K++K KE+KNGRLAM+A LG+ Q TG GP NL DHLADP + N
Sbjct: 173 MGLSRGDADKYKEYKQKEIKNGRLAMIACLGFAAQYAATGKGPLDNLADHLADPNHVNFA 232
Query: 270 TS 271
T+
Sbjct: 233 TN 234
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 138/249 (55%), Gaps = 28/249 (11%)
Query: 31 TGSSRK--GSFVVRAASTPP---VKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS- 84
TGSS K +R PP K A + W S +YL+G+LPGD GFDPLGL+
Sbjct: 24 TGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPTYLNGTLPGDNGFDPLGLAE 83
Query: 85 DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPP 144
DPE +W E++NGR+AMLG G + PE+ K G+I A W+
Sbjct: 84 DPENL------RWYVQAELVNGRWAMLGVAGMLLPEVFTKFGII---NAPQWYD------ 128
Query: 145 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 204
AG Y+A TLFV+E L + E RR+QD NPG + + F++Y + YPG
Sbjct: 129 AGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPI--FKQYSLPPHECGYPG 186
Query: 205 GPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 264
+FNPL ++ K KE+ NGRLAMLA LG+ VQ VTG GP++NLL HL+DP
Sbjct: 187 S-VFNPLNFAPTLEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHLSDPW 241
Query: 265 NNNVLTSLK 273
+N ++ +++
Sbjct: 242 HNTIINTIR 250
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 141/261 (54%), Gaps = 26/261 (9%)
Query: 16 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGAD---RPLWFASKQSLSYLDGSL 72
+TAR + A + + S+ G R A P ++ + W S +YL+GSL
Sbjct: 4 DTARTPVAALLSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLNGSL 63
Query: 73 PGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQE 131
PGD GFDPLGL+ DPE +W E++NGR+AMLG G + PE+L K GLI
Sbjct: 64 PGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLI--- 114
Query: 132 TALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 191
A W+ AG Y+A TLFV+E L + E R++QD NPG + + F+
Sbjct: 115 DAPQWYD------AGKATYFASSNTLFVIEFILFHYVEIRQWQDIKNPGCVNQDPI--FK 166
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
Y S + YPG +FNPL + + K KE+ NGRLAMLA LG+ VQ VT G
Sbjct: 167 SYRLPSDECGYPGS-VFNPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKG 221
Query: 252 PYQNLLDHLADPVNNNVLTSL 272
P+ NLL HL+DP +N ++ +L
Sbjct: 222 PFDNLLQHLSDPWHNTIIQTL 242
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 139/260 (53%), Gaps = 26/260 (10%)
Query: 17 TARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGAD---RPLWFASKQSLSYLDGSLP 73
TAR + A + + S+ G R A P ++ + W S +YL+GSLP
Sbjct: 5 TARTPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLNGSLP 64
Query: 74 GDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQET 132
GD GFDPLGL+ DPE +W E++NGR+AMLG G + PE+L K GLI
Sbjct: 65 GDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLI---D 115
Query: 133 ALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK 192
A W+ AG Y+A TLFV+E L + E RR+QD NPG + + F+
Sbjct: 116 APQWYD------AGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPI--FKS 167
Query: 193 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252
Y + YPG +FNPL + + K KE+ NGRLAMLA LG+ VQ VT GP
Sbjct: 168 YSLPPHECGYPGS-VFNPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKGP 222
Query: 253 YQNLLDHLADPVNNNVLTSL 272
+ NLL HL+DP +N ++ +L
Sbjct: 223 FDNLLQHLSDPWHNTIIQTL 242
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/270 (39%), Positives = 144/270 (53%), Gaps = 32/270 (11%)
Query: 13 SSVETARQILGARSAQSP----TGSSRK-----GSFVVRAASTPPVKQGADRPLWFASKQ 63
++V T I G R S TG+ K G + +ST +K A + W
Sbjct: 2 AAVTTQASIAGFRPCASKSRFLTGAPGKLNKECGVRLPSTSSTNSLKVEAKKGEWLPGLA 61
Query: 64 SLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIL 122
S +YL+GSLPGD GFDPL L+ DPE KW E++NGR+AMLG G + PE+
Sbjct: 62 SPAYLNGSLPGDNGFDPLALAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVF 115
Query: 123 GKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSM 182
+ G+I W+ AG Y+A TLFV+E L + E RR+QD NPGS+
Sbjct: 116 TQIGII---NVPKWYD------AGKQEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSV 166
Query: 183 GRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYF 242
+ F++Y + YPGG +FNPL ++ K KE+ NGRLAMLA LG+
Sbjct: 167 NQDPI--FKQYSLPPNEVGYPGG-IFNPLNFAPTAEA----KEKELANGRLAMLAFLGFI 219
Query: 243 VQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
VQ VTG GP+ NLL HL+DP +N ++ +
Sbjct: 220 VQHNVTGKGPFDNLLQHLSDPWHNTIIQTF 249
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 143/274 (52%), Gaps = 29/274 (10%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ TQA + S S +A L S R GS A S +G W
Sbjct: 4 VTTQAALGVSCPSVCRSA--FLTGSSVSRLARRVRPGSNPAPARSFKVEAKGE----WLP 57
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S SYL+GSLPGD GFDPLGL+ DPE KW E++NGR+AMLG G + P
Sbjct: 58 GLSSPSYLNGSLPGDNGFDPLGLAEDPESL------KWYVQAELVNGRWAMLGVAGMLIP 111
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
E+L GLI W+ AG Y+A TLFV+E L + E RR+QD P
Sbjct: 112 EVLTSIGLI---NVPKWYD------AGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYP 162
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
GS+ + F++Y + YPGG +FNPL ++ K KE+ NGRLAMLA L
Sbjct: 163 GSVNQDPL--FKQYSLPPNEVGYPGG-IFNPLNFSPSMEA----KEKELANGRLAMLAFL 215
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
G+ VQ VTG GP+ NLL HL+DP +N ++ +L+
Sbjct: 216 GFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTLQ 249
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 127/224 (56%), Gaps = 23/224 (10%)
Query: 50 KQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
K A + W S YL GSL GD GFDPLGL+ DPE KW E++NGR+
Sbjct: 50 KVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENL------KWFVQAELVNGRW 103
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFA 168
AMLG G + PE+ K G+I W+ AG Y+A TLFV+E L +
Sbjct: 104 AMLGVAGMLLPEVFTKLGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYV 154
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E RR+QD NPGS+ + F++Y G+ YPGG +FNPL ++ K KE+
Sbjct: 155 EIRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGG-IFNPLNFAPTLEA----KEKEI 207
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
NGRLAMLA LG+ VQ VTG GP++NLL HL+DP +N ++ +L
Sbjct: 208 ANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTL 251
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/269 (37%), Positives = 142/269 (52%), Gaps = 36/269 (13%)
Query: 8 SSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSY 67
SS+ + + AR+ L +RS +R G F V AA+ RP +F +
Sbjct: 11 SSNDSLKLSRARRRLVSRS-------TRSGLFAVSAAA---------RPNFFPGSTPPKH 54
Query: 68 LDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA-- 125
LDG++ GDYGFDPLGL + + + +W E+++ R+AMLG G APE++G
Sbjct: 55 LDGTMAGDYGFDPLGLGEDK-----VALQWYQQAELVHARWAMLGVAGMAAPELVGNPFV 109
Query: 126 -GLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGR 184
G +P +F Y AD TLFV++M M +AE RR+QD NPGS+
Sbjct: 110 DGPLPNWAEAPFFD----------GYIADANTLFVVQMFFMNWAEVRRWQDMKNPGSVHA 159
Query: 185 QYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 244
+ K G D YPGG LFNP+G+ K K + KE+ NGRLAM+A +G F+Q
Sbjct: 160 DPYDENRKCTGS--DVGYPGGGLFNPMGMAKSVADEKALRAKEIANGRLAMVAAMGCFIQ 217
Query: 245 GLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
VTG GP NL H+ADPV+ + + +
Sbjct: 218 HDVTGTGPVANLKAHIADPVHVTIFQNFQ 246
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 135/247 (54%), Gaps = 33/247 (13%)
Query: 27 AQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-D 85
A P G S SF V A K+G W S YL GSLPGD GFDPLGL+ D
Sbjct: 35 AFRPVGCSPSASFKVEA------KKGE----WLPGLASPGYLTGSLPGDNGFDPLGLAED 84
Query: 86 PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA 145
PE +W E++NGR+AMLG G + PE+ G+I W+ A
Sbjct: 85 PENL------RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII---NVPKWYA------A 129
Query: 146 GTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 205
G Y+A TLFV+E L + E RR+QD NPGS+ + F++Y +G+ YPGG
Sbjct: 130 GKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGG 187
Query: 206 PLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVN 265
+FNPL ++ K KE+ NGRLAMLA LG+ +Q VTG GP+ NLL H++DP +
Sbjct: 188 -IFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWH 242
Query: 266 NNVLTSL 272
N ++ +L
Sbjct: 243 NTIVQTL 249
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 139/249 (55%), Gaps = 29/249 (11%)
Query: 31 TGSS----RKGSF--VVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS 84
TGSS R+ SF + ++ T K A + W S YL+GSL GD GFDPLGL+
Sbjct: 24 TGSSGRLNRELSFKSIGSSSKTASFKVEAKKGEWLPGLASPGYLNGSLAGDNGFDPLGLA 83
Query: 85 -DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIP 143
DPE KW E++NGR+AMLG G + PE+ K G+I W+
Sbjct: 84 EDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NVPEWYD----- 129
Query: 144 PAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYP 203
AG Y+A TLFV+E L + E RR+QD NPGS+ + F++Y + YP
Sbjct: 130 -AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPPNEVGYP 186
Query: 204 GGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
GG +FNPL ++ K KE+ NGRLAMLA LG+ +Q VTG GP++NLL HL+DP
Sbjct: 187 GG-IFNPLNFAPTVEA----KEKELANGRLAMLAFLGFVIQHNVTGKGPFENLLQHLSDP 241
Query: 264 VNNNVLTSL 272
+N ++ +L
Sbjct: 242 WHNTIVQTL 250
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 138/260 (53%), Gaps = 26/260 (10%)
Query: 17 TARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGAD---RPLWFASKQSLSYLDGSLP 73
TAR + A + S+ G R A P ++ + W S +YL+GSLP
Sbjct: 5 TARAPVAALRPSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLNGSLP 64
Query: 74 GDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQET 132
GD GFDPLGL+ DPE +W E++NGR+AMLG G + PE+L K GLI
Sbjct: 65 GDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLI---D 115
Query: 133 ALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK 192
A W+ AG Y+A TLFV+E L + E RR+QD NPG + + F+
Sbjct: 116 APQWYD------AGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPI--FKS 167
Query: 193 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252
Y + YPG +FNPL + + K KE+ NGRLAMLA LG+ VQ VT GP
Sbjct: 168 YSLPPHECGYPGS-VFNPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKGP 222
Query: 253 YQNLLDHLADPVNNNVLTSL 272
+ NLL HL+DP +N ++ +L
Sbjct: 223 FDNLLQHLSDPWHNTIIQTL 242
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/233 (42%), Positives = 129/233 (55%), Gaps = 19/233 (8%)
Query: 39 FVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKW 97
V AA + V A+R W + SYL G LPGD+GFDPL L DP KW
Sbjct: 22 LTVSAARSARVVVRAERASWLPGSEIPSYLKGELPGDFGFDPLRLGEDPAAL------KW 75
Query: 98 LAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTL 157
E+ NGR+AML A G + ++LG G A WF+ A + Y+A TL
Sbjct: 76 YQQAELQNGRWAMLAAAGILFVDLLGHLGAGGPAAATPWFK------ASDFTYFAPTSTL 129
Query: 158 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSG-DPAYPGGPLFNPLGLGKD 216
F++E+ L + E RR+QD PGS + F +Y SG +P YPGG +F+PLG K
Sbjct: 130 FIVELLLFAWVEVRRYQDMVKPGSTNQDPI--FSQYSLPSGNEPGYPGG-IFDPLGYSKG 186
Query: 217 EKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+M + KLKE+KN RLAMLA+LG+FVQ TG P +L HLADP +NNV
Sbjct: 187 --NMAELKLKEIKNARLAMLAVLGFFVQAKTTGKTPLDSLSSHLADPWSNNVF 237
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 124/220 (56%), Gaps = 21/220 (9%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DRPLWF +LDGSLPGD+GFDPLGL SDP+ KW A E+I+ R+AML
Sbjct: 64 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTL------KWFAQAELIHSRWAMLA 117
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
G I PE L + G I +W+ AG+ Y+AD TLFV +M LMG+AE RR
Sbjct: 118 VTGIIIPECLERLGFIEN---FSWYD------AGSREYFADSTTLFVAQMVLMGWAEGRR 168
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKEVKN 230
+ D PGS+ + + + D YPGG F+ + G G E M + KE+KN
Sbjct: 169 WADLIKPGSVDIEP--KYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMV-LRTKEIKN 225
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
GRLAMLA LG+ Q T P +NL+ HLADP + NV +
Sbjct: 226 GRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFS 265
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 137/263 (52%), Gaps = 26/263 (9%)
Query: 14 SVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLP 73
S +T R L R+ + + R VR + A RP +F +LDG++P
Sbjct: 6 SQQTFRTGLMIRAHRHRSLGCRSARSSVRTVA------AAVRPNYFPGSTPPKHLDGTMP 59
Query: 74 GDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA---GLIPQ 130
GDYGFDPLGL + + W E+++ R+AMLG G APEI G G +P
Sbjct: 60 GDYGFDPLGLGEDKAALA-----WYQQAELMHARWAMLGVAGMAAPEIFGNPLVDGPLPN 114
Query: 131 ETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF 190
A A F G Y AD TLFV++M LM +AE RR+QD NPGS+ +
Sbjct: 115 -WADAPFYDG---------YIADANTLFVVQMFLMNWAEVRRWQDMKNPGSVHADPYDES 164
Query: 191 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
K G D YPGG LFNP+G+ K + K + KE+ NGRLAM+A +G F+Q VTG
Sbjct: 165 RKCTGT--DVGYPGGGLFNPMGMAKSAEEEKTLRTKEIANGRLAMVAAMGCFIQHDVTGT 222
Query: 251 GPYQNLLDHLADPVNNNVLTSLK 273
GP NL HLADP + + + +
Sbjct: 223 GPVANLKAHLADPAHATIFQNFQ 245
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 126/216 (58%), Gaps = 23/216 (10%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W QS +YLDGSL GD GFDPL L+ DPE + +W E++NGR+AMLG G
Sbjct: 49 WLPGLQSPAYLDGSLAGDNGFDPLALAEDPE------DLRWFVQAELVNGRWAMLGVAGM 102
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE+L KAGL+ A W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 103 LIPEVLTKAGLL---NAPEWYD------AGKETYFASSSTLFVIEFILFHYVEIRRWQDI 153
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
NPGS+ + F+ Y + YPG +FNPL ++ K KE+ NGRLAML
Sbjct: 154 KNPGSVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEN----KEKELANGRLAML 206
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
A LG+ VQ VTG GP++NL HLADP +N ++ ++
Sbjct: 207 AFLGFLVQHNVTGKGPFENLQQHLADPWHNTIIQTI 242
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 124/216 (57%), Gaps = 23/216 (10%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W S SYLDGSL GD GFDPLGL+ DPE +W E++NGR+AMLG G
Sbjct: 52 WLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGM 105
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE+L KAGLI A W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 106 LIPEVLTKAGLI---NAPQWYD------AGKSEYFASSSTLFVVEFILFXYVEIRRWQDI 156
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
NPGS+ + F+ Y + YPG +FNPL ++ K KE+ NGRLAML
Sbjct: 157 KNPGSVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEA----KEKELANGRLAML 209
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
A LG+ +Q VTG GP+ NLL HL+DP +N ++ +
Sbjct: 210 AFLGFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTF 245
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 125/217 (57%), Gaps = 23/217 (10%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W S SYL+GSLPGD GFDPLGL+ DPE KW E++NGR+AMLG G
Sbjct: 48 WLPGLSSPSYLNGSLPGDNGFDPLGLAEDPESL------KWYVQAELVNGRWAMLGVAGM 101
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE+L GLI W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 102 LIPEVLTSIGLI---NVPKWYD------AGKVEYFASSSTLFVIEFILFHYVELRRWQDI 152
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
PGS+ + F++Y + YPGG +FNPL ++ K KE+ NGRLAML
Sbjct: 153 KYPGSVNQDPL--FKQYSLPPNEVGYPGG-IFNPLNFSPSMEA----KEKELANGRLAML 205
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
A LG+ VQ VTG GP+ NLL HL+DP +N ++ +L+
Sbjct: 206 AFLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTLQ 242
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 124/216 (57%), Gaps = 23/216 (10%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W S SYLDGSL GD GFDPLGL+ DPE +W E++NGR+AMLG G
Sbjct: 52 WLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGM 105
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE+L KAGLI A W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 106 LIPEVLTKAGLI---NAPQWYD------AGKSEYFASSSTLFVVEFILFHYVEIRRWQDI 156
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
NPGS+ + F+ Y + YPG +FNPL ++ K KE+ NGRLAML
Sbjct: 157 KNPGSVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEA----KEKELANGRLAML 209
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
A LG+ +Q VTG GP+ NLL HL+DP +N ++ +
Sbjct: 210 AFLGFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTF 245
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 126/216 (58%), Gaps = 23/216 (10%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W QS +YLDGSL GD GFDPL L+ DPE + +W E++NGR+AMLG G
Sbjct: 32 WLPGLQSPAYLDGSLAGDNGFDPLALAEDPE------DLRWFVQAELVNGRWAMLGVAGM 85
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE+L KAGL+ A W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 86 LIPEVLTKAGLL---NAPEWYD------AGKETYFASSSTLFVIEFILFHYVEIRRWQDI 136
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
NPGS+ + F+ Y + YPG +FNPL ++ K KE+ NGRLAML
Sbjct: 137 KNPGSVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEN----KEKELANGRLAML 189
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
A LG+ VQ VTG GP++NL HLADP +N ++ ++
Sbjct: 190 AFLGFLVQHNVTGKGPFENLQQHLADPWHNTIIQTI 225
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 137/260 (52%), Gaps = 26/260 (10%)
Query: 17 TARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGAD---RPLWFASKQSLSYLDGSLP 73
TAR + A + S+ G R A P ++ + W S +YL+GSLP
Sbjct: 5 TARAPVAALRPSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLNGSLP 64
Query: 74 GDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQET 132
GD GFDPLGL+ DPE +W E++NGR+AMLG G + PE+L K GLI
Sbjct: 65 GDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLI---D 115
Query: 133 ALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK 192
A W+ AG Y+A TLFV+E L E RR+QD NPG + + F+
Sbjct: 116 APQWYD------AGKATYFASSSTLFVIEFILFHSVEIRRWQDIKNPGCVNQDPI--FKS 167
Query: 193 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252
Y + YPG +FNPL + + K KE+ NGRLAMLA LG+ VQ VT GP
Sbjct: 168 YSLPPHECGYPGS-VFNPLNF----EPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKGP 222
Query: 253 YQNLLDHLADPVNNNVLTSL 272
+ NLL HL+DP +N ++ +L
Sbjct: 223 FDNLLQHLSDPWHNTIIQTL 242
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 123/216 (56%), Gaps = 23/216 (10%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W S SYLDGSL GD GFDPLGL+ DPE +W E++NGR+AMLG G
Sbjct: 52 WLPGLPSPSYLDGSLAGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGM 105
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE+L KAGLI A W+ A Y+A TLFV+E L + E RR+QD
Sbjct: 106 LIPEVLTKAGLI---NAPQWYD------ASKSEYFASSSTLFVVEFILFHYVEIRRWQDI 156
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
NPGS+ + F+ Y + YPG +FNPL ++ K KE+ NGRLAML
Sbjct: 157 KNPGSVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEA----KEKELANGRLAML 209
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
A LG+ +Q VTG GP+ NLL HL+DP +N ++ +
Sbjct: 210 AFLGFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTF 245
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 145/273 (53%), Gaps = 34/273 (12%)
Query: 9 SSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPV--------KQGADRPLWFA 60
+++T+ A A ++ +GSS K + R S PV K A + W
Sbjct: 2 ATVTTQASAAVFRPCAARSRFLSGSSGK---LQRVLSVKPVSASSSSSFKVEAKKGEWLP 58
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S YL+GSLPGD GFDPLGL+ DPE +W E++NGR+AMLG G + P
Sbjct: 59 GLPSPMYLNGSLPGDNGFDPLGLAEDPENL------RWYVQAELVNGRWAMLGVAGMLLP 112
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
E+ K G+I A W+ AG Y+A TLFV+E L + E RR+QD NP
Sbjct: 113 EVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 163
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
G + + F++Y + YPGG +FNPL ++ K KE+ NGRLAMLA L
Sbjct: 164 GCVNQDPI--FKQYSLPPNECGYPGG-IFNPLNFAPTLEA----KEKEIANGRLAMLAFL 216
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
G+ VQ VTG GP+ NLL H++DP +N ++ +
Sbjct: 217 GFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTF 249
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 148/281 (52%), Gaps = 43/281 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPP--VKQGADRPLW 58
MAT AL S+ +Q R GSSR F+ R ++ P + G DRP +
Sbjct: 1 MATSALQQSAFAGQTALKQQNELVRR----VGSSRGRFFMRRTTASTPKSIWYGPDRPKY 56
Query: 59 FA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G
Sbjct: 57 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHGRWAMLGALG 110
Query: 116 AIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMG 166
+ PEIL K G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 111 CVFPEILAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 168
Query: 167 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
F E R P LG D YPGG F+PLGL D + + K+K
Sbjct: 169 FVEGYRVG--GGP--------------LGEGLDAIYPGGA-FDPLGLADDPDAFAELKVK 211
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
E+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 212 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 252
>gi|87313171|gb|ABD37882.1| light-harvesting chlorophyll-a/b binding protein Lhca4.2
[Mesostigma viride]
gi|145079732|tpg|DAA05926.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca5 [Mesostigma viride]
Length = 246
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/254 (41%), Positives = 142/254 (55%), Gaps = 24/254 (9%)
Query: 28 QSPTGSSRKGSFVVRAASTPP------VKQGADRPLWFASKQSLSYLDGSLPGDYGFDPL 81
Q+ T K + V RA + P ADRPLW + SYLDGSLPGD+G+DPL
Sbjct: 10 QASTFLGSKVAPVARATAAKPQAKFAVFAAKADRPLWCPGIPAPSYLDGSLPGDFGYDPL 69
Query: 82 GLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG 140
LS+ P+ KW+ E+ N R+AMLG G ++ ++L G++P W+
Sbjct: 70 SLSNSPDKL------KWMVQAELQNARWAMLGVAGMLSVDLL--QGILPDNVP-QWYDAP 120
Query: 141 VIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
++ A Y A+ +LF+++M LMGF E RR+ D PGS K L SG P
Sbjct: 121 LL--ADVYP--AEWKSLFIIQMILMGFVEARRWADINTPGSANVDPVFNNNK-LPDSGTP 175
Query: 201 AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
YPGG +F+PLG K ++++ K KE++NGRLAM+A LG F+Q TG P NL DHL
Sbjct: 176 GYPGG-MFDPLGFSK--GNLEESKWKELRNGRLAMVASLGMFIQYDATGKSPLTNLADHL 232
Query: 261 ADPVNNNVLTSLKF 274
ADP +NNV L F
Sbjct: 233 ADPWHNNVCALLPF 246
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 147/269 (54%), Gaps = 34/269 (12%)
Query: 8 SSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSY 67
SS L + + R +L R A+S SS + SF VRAA+ DRP+WF +
Sbjct: 24 SSFLGGAGRSGRLLL--RQAES---SSARASFAVRAAA-------PDRPIWFPGSTPPPW 71
Query: 68 LDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAG 126
LDGSLPGD+GFDPLGL SDPE +W ++++ R+AMLGA G PE L K G
Sbjct: 72 LDGSLPGDFGFDPLGLGSDPESL------RWNVQADLVHCRWAMLGAAGIFIPEFLTKIG 125
Query: 127 LIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWA-NPGSMGRQ 185
++ +W+ AG + Y+ D TLF++E+ L+G+AE RR+ D NPG +
Sbjct: 126 IL---NTPSWYT------AGEHQYFTDTTTLFIIELILIGWAEGRRWADIIINPGCVNTD 176
Query: 186 YFLGFEKYLGGS-GDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFV 243
++ G G+P G +PLG G + +K+ + KE+KNGR+AMLA++G +
Sbjct: 177 PIFPQQQVHGHRRGEPC---GLWLDPLGWGTVSPEKIKELRTKEIKNGRVAMLAVMGAWF 233
Query: 244 QGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
Q TG GP N H+ADP + + +
Sbjct: 234 QAEHTGTGPIDNFFAHVADPGHATIFQAF 262
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 125/216 (57%), Gaps = 23/216 (10%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W S +YLDGSL GD GFDPL L+ DP + +W E++NGR+AMLG G
Sbjct: 51 WLPGLASPAYLDGSLAGDNGFDPLALAEDPA------DLRWFVQAELVNGRWAMLGVAGM 104
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE+L KAGL+ +A W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 105 LIPELLTKAGLL---SAPEWYD------AGKETYFASSSTLFVVEFILFHYVEIRRWQDI 155
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
NPGS+ + F+ Y D YPG +FNPL ++ K KE+ NGRLAML
Sbjct: 156 KNPGSVNQDPI--FKSYSLPDHDCGYPGS-VFNPLNFAPTLEN----KEKELANGRLAML 208
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
A LG+ VQ VTG GP++NL+ HLADP +N ++ +
Sbjct: 209 AFLGFLVQHNVTGKGPFENLMQHLADPWHNTIIQTF 244
>gi|87313165|gb|ABD37879.1| light-harvesting chlorophyll-a/b binding protein Lhca2 [Mesostigma
viride]
Length = 242
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 142/262 (54%), Gaps = 32/262 (12%)
Query: 12 TSSVETARQILGAR--SAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLD 69
S + A LG++ S T + + FVV A+S +RP+WF ++LD
Sbjct: 2 VSQMIQASTFLGSKVASVARATPAKAQAKFVVSASS--------NRPVWFPGNAPRAWLD 53
Query: 70 GSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLI 128
GSLPGD+G+DPLGLS DP+ KW+ E+ N R+AMLG G + ++ K GL
Sbjct: 54 GSLPGDFGYDPLGLSSDPQVL------KWMVQAELQNARWAMLGVAGMLGADLANKVGL- 106
Query: 129 PQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFL 188
A+ W++ ++ +Y AD TL V+++ L + E RR+ D+ +PGS
Sbjct: 107 --PAAVQWYEAPLV------DYQADWKTLLVVQLVLHAWVEGRRWADFHSPGSANAD--- 155
Query: 189 GFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT 248
F L + YPGGP F+PLG K ++ + KLKE+KNGRLAM+A LG FVQ T
Sbjct: 156 PFGNSLPSTATTGYPGGP-FDPLGFSKG--NLPELKLKEIKNGRLAMVASLGLFVQYSAT 212
Query: 249 GVGPYQNLLDHLADPVNNNVLT 270
G P NL HLADP + N+
Sbjct: 213 GASPLDNLAAHLADPGHANIFA 234
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 123/217 (56%), Gaps = 23/217 (10%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W S +YL+GSLPGD GFDPLGL+ DPE KW E++NGR+AMLG G
Sbjct: 55 WLPGLSSPTYLNGSLPGDNGFDPLGLAEDPESL------KWYVQAELVNGRWAMLGVAGM 108
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE+L G I W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 109 LIPEVLTSFGFI---DVPKWYD------AGKVEYFASSSTLFVIEFILFHYVELRRWQDI 159
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
PGS+ + F+ Y + YPGG +FNPL ++ K KE+ NGRLAML
Sbjct: 160 KYPGSVNQDPV--FKNYSLPPNEVGYPGG-IFNPLNFSPSMEA----KEKELANGRLAML 212
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
A LG+ VQ VTG GP++NLL HL+DP +N ++ + +
Sbjct: 213 AFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIIQTFQ 249
>gi|145079606|tpg|DAA05920.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Mesostigma viride]
Length = 238
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 140/256 (54%), Gaps = 32/256 (12%)
Query: 18 ARQILGAR--SAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGD 75
A LG++ S T + + FVV A+S +RP+WF ++LDGSLPGD
Sbjct: 4 ASTFLGSKVASVARATPAKAQAKFVVSASS--------NRPVWFPGNAPRAWLDGSLPGD 55
Query: 76 YGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
+G+DPLGLS DP+ KW+ E+ N R+AMLG G + ++ K GL A+
Sbjct: 56 FGYDPLGLSSDPQVL------KWMVQAELQNARWAMLGVAGMLGADLANKVGL---PAAV 106
Query: 135 AWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL 194
W++ ++ +Y AD TL V+++ L + E RR+ D+ +PGS F L
Sbjct: 107 QWYEAPLV------DYQADWKTLLVVQLVLHAWVEGRRWADFHSPGSANAD---PFGNSL 157
Query: 195 GGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 254
+ YPGGP F+PLG K ++ + KLKE+KNGRLAM+A LG FVQ TG P
Sbjct: 158 PSTATTGYPGGP-FDPLGFSKG--NLPELKLKEIKNGRLAMVASLGLFVQYSATGASPLD 214
Query: 255 NLLDHLADPVNNNVLT 270
NL HLADP + N+
Sbjct: 215 NLAAHLADPGHANIFA 230
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 128/243 (52%), Gaps = 19/243 (7%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDG----SLPGDYGFDPLGL-SDPEGT 89
R G A+S V R W Q ++LD +L G++GFDPLGL DP
Sbjct: 1 RSGVAARSASSRKSVVTCVARQSWLPGSQIPAHLDTPSAQALAGNFGFDPLGLGKDP--- 57
Query: 90 GGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYN 149
+ W E+I+ R AM G G + P +L KAG + W+ G + ++
Sbjct: 58 ---VALAWYQQAELIHCRTAMTGVAGILIPGLLTKAGAL---NVPEWYDAGKVAIENSFA 111
Query: 150 YWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLF 208
W TL +++ L GF E +R+QD PGS G FLGFE L G+ + YPGGP F
Sbjct: 112 PWG---TLLAVQLFLCGFVEVKRWQDIRKPGSQGEPGSFLGFESSLKGTSEVGYPGGP-F 167
Query: 209 NPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
+PLGL K+ D+KLKEVKNGRLAMLA LG+ Q TG GP NL+ HL DP + N
Sbjct: 168 DPLGLSKEADKWADWKLKEVKNGRLAMLAFLGFVAQKYATGAGPVDNLVAHLKDPWHVNY 227
Query: 269 LTS 271
T+
Sbjct: 228 ATN 230
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 137/249 (55%), Gaps = 28/249 (11%)
Query: 31 TGSSRKGSFVVRAASTPPVKQG-----ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS- 84
+GSS K RA + P G A + W S YL+GSLPGD GFDPLGL+
Sbjct: 20 SGSSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPGLASPGYLNGSLPGDNGFDPLGLAG 79
Query: 85 DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPP 144
DP KW E+ NGR+AM+G G + PE+L K G+I A W+
Sbjct: 80 DPANL------KWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVI---NAPLWYD------ 124
Query: 145 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 204
AG Y+A TLFV+E + + E RR+QD PGS+ + F+ Y + YPG
Sbjct: 125 AGKVEYFAPASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQDPI--FKGYSLPPNEVGYPG 182
Query: 205 GPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 264
G +FNPL +E ++K KE+ NGRLAMLA LG+ +Q VT GP++NLL HL+DP
Sbjct: 183 G-IFNPLNFPANE----EYKEKELANGRLAMLAFLGFIIQSNVTHQGPFENLLTHLSDPW 237
Query: 265 NNNVLTSLK 273
++ ++ S++
Sbjct: 238 HHTIVQSIQ 246
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/247 (40%), Positives = 134/247 (54%), Gaps = 34/247 (13%)
Query: 27 AQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-D 85
A P G S SF V A K+G W S YL GSLPGD GFDPLGL+ D
Sbjct: 35 AFRPVGCSPSASFKVEA------KKGE----WLPGLASPGYLTGSLPGDNGFDPLGLAED 84
Query: 86 PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA 145
PE +W E++NGR+AMLG G + PE+ G+I W+ A
Sbjct: 85 PENL------RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII---NVPKWYA------A 129
Query: 146 GTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 205
G Y+A TLFV+E L + E RR+QD NPGS+ + F++Y +G+ YPGG
Sbjct: 130 GKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGG 187
Query: 206 PLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVN 265
+FNPL ++ K KE+ NGRL MLA LG+ +Q VTG GP+ NLL H++DP +
Sbjct: 188 -IFNPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWH 241
Query: 266 NNVLTSL 272
N ++ +L
Sbjct: 242 NTIVQTL 248
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 123/217 (56%), Gaps = 23/217 (10%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W S +YL+GSLPGD GFDPLGL+ DP+ KW E++NGR+AMLG G
Sbjct: 55 WLPGLSSPTYLNGSLPGDNGFDPLGLAEDPDSL------KWYVQAELVNGRWAMLGVAGM 108
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE+L G I W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 109 LIPEVLTSFGFI---DVPKWYD------AGKVEYFASSSTLFVIEFILFHYVELRRWQDI 159
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
PGS+ + F+ Y + YPGG +FNPL ++ K KE+ NGRLAML
Sbjct: 160 KYPGSVNQDPV--FKNYSLPPNEVGYPGG-IFNPLNFSPSMEA----KEKELANGRLAML 212
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
A LG+ VQ VTG GP++NLL HL+DP +N ++ + +
Sbjct: 213 AFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIIQTFQ 249
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 117/200 (58%), Gaps = 19/200 (9%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
+LDGSLPGD+GFDPLGLS DPE +W E+++ R+AMLGA G PE L K
Sbjct: 2 EWLDGSLPGDFGFDPLGLSSDPESL------RWNVQAELVHSRWAMLGAAGIFIPEFLTK 55
Query: 125 AGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGR 184
G++ +W+ AG Y+ D TLF++E+ +G+AE RR+ D NPG +
Sbjct: 56 LGIL---NTPSWYT------AGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNT 106
Query: 185 QYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFV 243
K G D YPGG F+PLG G + +K+ + KE+KNGRLAMLA++G +
Sbjct: 107 DPIFPNNKLTGT--DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWF 164
Query: 244 QGLVTGVGPYQNLLDHLADP 263
Q + TG GP NL HLADP
Sbjct: 165 QHIYTGTGPIDNLFAHLADP 184
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/268 (37%), Positives = 143/268 (53%), Gaps = 38/268 (14%)
Query: 22 LGARSAQSPTGSSRKGSFVVRAAS---------------TPPVKQGADRPLWFASKQSLS 66
+ A + Q+ G S +F+ R++S T K A + W S
Sbjct: 1 MAASTMQASIGVSCPSTFLSRSSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPGLASPG 60
Query: 67 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125
YL+GSLPGD GFDPLGL+ DP KW E+ NGR+AM+G G + PE+L K
Sbjct: 61 YLNGSLPGDNGFDPLGLAGDPANL------KWYVQAELQNGRWAMVGVAGMLIPEVLTKI 114
Query: 126 GLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ 185
G+I A W+ AG Y+A TLFV+E + + E RR+QD PGS+ +
Sbjct: 115 GVI---NAPLWYD------AGKVEYFAPASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQD 165
Query: 186 YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQG 245
F+ Y + YPGG +FNPL +E ++K KE+ NGRLAMLA LG+ +Q
Sbjct: 166 PI--FKGYSLPPNEVGYPGG-IFNPLNFPANE----EYKEKELANGRLAMLAFLGFIIQS 218
Query: 246 LVTGVGPYQNLLDHLADPVNNNVLTSLK 273
VT GP++NLL HL+DP ++ ++ S++
Sbjct: 219 NVTHQGPFENLLTHLSDPWHHTIVQSIQ 246
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 135/262 (51%), Gaps = 30/262 (11%)
Query: 17 TARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGAD---RPLWFASKQSLSYLDGSLP 73
TAR + A + + S+ G R A P ++ + W S +YL+GSLP
Sbjct: 5 TARTPVAALRSSASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPGLPSPTYLNGSLP 64
Query: 74 GDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQET 132
GD GFDPLGL+ DPE +W E++NGR+AMLG G + PE+L K GLI
Sbjct: 65 GDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLI---D 115
Query: 133 ALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ-YFLGFE 191
A W+ AG Y+A TLFV+E L + E RR+QD NPG + + F +
Sbjct: 116 APQWYD------AGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKSYS 169
Query: 192 KYLGGSGDPAYPGGPL-FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
G PA PL F P K+ KE+ NGRLAMLA LG+ VQ VT
Sbjct: 170 LPPHECGYPAASSTPLNFEPTLEAKE---------KELANGRLAMLAFLGFLVQHNVTQK 220
Query: 251 GPYQNLLDHLADPVNNNVLTSL 272
GP+ NLL HL+DP +N ++ +L
Sbjct: 221 GPFDNLLQHLSDPWHNTIIQTL 242
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 123/216 (56%), Gaps = 23/216 (10%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W S +YL+GSLPGD GFDPLGL+ DPE +W E++N R+AMLG G
Sbjct: 49 WLPGLPSPAYLNGSLPGDNGFDPLGLAEDPENL------RWYVQAELVNARWAMLGVAGM 102
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE+L K G+I A W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 103 LLPEVLTKIGII---NAPLWYD------AGKSTYFASSSTLFVIEFILFHYVEIRRWQDI 153
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
NPG + + F+ Y + YPG +FNPL + + K KE+ NGRLAML
Sbjct: 154 KNPGCVNQDPI--FKNYSLPPHECGYPGS-VFNPLNF----EPTLEAKEKELANGRLAML 206
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
A L + VQ +TG GP++NLL HL+DP +N ++ +L
Sbjct: 207 AFLAFMVQHGITGKGPFENLLQHLSDPWHNTIIQTL 242
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 128/243 (52%), Gaps = 19/243 (7%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDG----SLPGDYGFDPLGL-SDPEGT 89
R G A+S V R W Q ++LD +L G++GFDPLGL DP
Sbjct: 7 RSGVAARSASSRKSVVTCVARQSWLPGSQIPAHLDTPAAQALAGNFGFDPLGLGKDP--- 63
Query: 90 GGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYN 149
+ +W E+I+ R AM G G + P +L KAG + W+ G + ++
Sbjct: 64 ---VALRWYQQAELIHCRTAMAGVAGILIPGLLTKAGAL---NVPEWYDAGKVAIENSFA 117
Query: 150 YWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLF 208
W +L +++ L GF E +R+QD PGS G FLGFE L G+ + YPGGP F
Sbjct: 118 PWG---SLLAVQLFLCGFVEAKRWQDIRKPGSQGEPGSFLGFEASLKGTSELGYPGGP-F 173
Query: 209 NPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
+PLGL K+ D+KLKEVKNGRLAMLA LG+ Q TG GP NL HL DP + N
Sbjct: 174 DPLGLSKEADKWADWKLKEVKNGRLAMLAFLGFVAQKYATGAGPVDNLAAHLKDPWHVNY 233
Query: 269 LTS 271
T+
Sbjct: 234 ATN 236
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 146/268 (54%), Gaps = 34/268 (12%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFAS 61
++ A+ +S++ +V+ AR+ + A ++S G ++ R A+ P GAD P
Sbjct: 22 SSVAVKASAVPENVKEAREWIDAWKSKS--GGAK------RDAALPSWMPGADLP----- 68
Query: 62 KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
YL+G+LPGD+GFDPL L DP ++ KW A E++N R+AML G + PE
Sbjct: 69 ----GYLNGTLPGDFGFDPLYLGQDP------VKLKWYAQAELMNARFAMLAVAGILVPE 118
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
+L G +AW+ AG + Y+A +LF ++M L + E RR+QD+ PG
Sbjct: 119 LLSNIGFSWPGAGVAWYD------AGKFEYFAPASSLFGVQMLLFAWVEIRRYQDFVKPG 172
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
S + K G+ +P YPGG +F+P G K + +K KLKE+KNGRLAMLA G
Sbjct: 173 SANQDPIFTNNKLPDGN-EPGYPGG-IFDPFGWSKGD--IKSLKLKEIKNGRLAMLAFAG 228
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNV 268
+ Q TG P +NL HLADP + V
Sbjct: 229 FIGQAYTTGTTPLKNLSTHLADPWSTTV 256
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 146/268 (54%), Gaps = 34/268 (12%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFAS 61
++ A+ +S++ +V+ AR+ + A ++S G ++ R A+ P GAD P
Sbjct: 22 SSVAVKASAVPENVKEAREWIDAWKSKS--GGAK------RDAALPSWMPGADLP----- 68
Query: 62 KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
YL+G+LPGD+GFDPL L DP ++ KW A E++N R+AML G + PE
Sbjct: 69 ----GYLNGTLPGDFGFDPLYLGQDP------VKLKWYAQAELMNARFAMLAVAGILVPE 118
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
+L G +AW+ AG + Y+A +LF ++M L + E RR+QD+ PG
Sbjct: 119 LLSNIGFSWPGAGVAWYD------AGKFEYFAPASSLFGVQMLLFAWVEIRRYQDFVKPG 172
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
S + K G+ +P YPGG +F+P G K + +K KLKE+KNGRLAMLA G
Sbjct: 173 SANQDPIFTNNKLPDGN-EPGYPGG-IFDPFGWSKGD--IKSLKLKEIKNGRLAMLAFAG 228
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNNV 268
+ Q TG P +NL HLADP + V
Sbjct: 229 FIGQAYTTGTTPLKNLSTHLADPWSTTV 256
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 121/217 (55%), Gaps = 23/217 (10%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W S SYL+GSLPGD G DPLGL+ DPE KW E++NGR+AMLG G
Sbjct: 55 WLPGLSSPSYLNGSLPGDNGXDPLGLAEDPESL------KWYVQAELVNGRWAMLGVAGM 108
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
PE+L GLI W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 109 XIPEVLTSIGLI---NVPKWYD------AGKVEYFASSXTLFVIEFILFHYVELRRWQDI 159
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
PGS+ + + Y + YPGG +FNPL ++ K KE+ NGRLAML
Sbjct: 160 KYPGSVNQDPIX--KSYSLPPNEVGYPGG-IFNPLNFSPSMEA----KEKELANGRLAML 212
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
A LG+ VQ VTG GP+ NLL HL+DP +N ++ +L+
Sbjct: 213 AFLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTLQ 249
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 124/225 (55%), Gaps = 21/225 (9%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DRP L++LDGSLPGD+GFDP GL SDP+ KW A E+I+ R+AML
Sbjct: 65 DRPYGSLVALHLNWLDGSLPGDFGFDPFGLGSDPDTL------KWFAQAELIHSRWAMLA 118
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
G I PE L + G I +W+ AG+ Y+AD TLFV +M LMG+AE RR
Sbjct: 119 VTGIIIPECLERLGFIEN---FSWYD------AGSREYFADSTTLFVAQMVLMGWAEGRR 169
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL--GLGKDEKSMKDFKLKEVKN 230
+ D PGS+ + + + D YPGG F+ + G G E M + KE+KN
Sbjct: 170 WADLIKPGSVDIEP--KYPHKVNPKPDAGYPGGLWFDFMMWGRGSPEPVMV-LRTKEIKN 226
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
GRLAMLA LG+ Q T P +NL+ HLADP + NV ++ H
Sbjct: 227 GRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 271
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 149/280 (53%), Gaps = 43/280 (15%)
Query: 1 MATQALVSSSLTSSV-ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
M + AL SL V E +R++LG A+ + V ++A + + GADRP +
Sbjct: 7 MHSTALAGQSLVKPVNELSRKVLGNVEARVTMRRT-----VSKSAGSDTIWYGADRPKFL 61
Query: 60 A--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
S ++ SYL+G GDYG+D GLS DPE F + L EVI+ R+AMLGA+G
Sbjct: 62 GPFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALGC 115
Query: 117 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGF 167
+ PE+L K+G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 116 LTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 173
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R P LG DP YPGG F+PLGL D + + K+KE
Sbjct: 174 VEGYRVA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDTFAELKVKE 216
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 217 IKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 256
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 119/216 (55%), Gaps = 23/216 (10%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W S +YLDG LPGD GFDPLGL+ DPE +W E++NGR+AMLG G
Sbjct: 49 WLPGLPSPAYLDGKLPGDNGFDPLGLAEDPENL------RWYVQAELVNGRWAMLGVAGM 102
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE+L K GLI A W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 103 LTPELLTKIGLI---NAPEWYD------AGKSTYFASSSTLFVVEFILFHYVEIRRWQDI 153
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
PG + + F+ Y + YPG +FNPL ++ K KE+ NGRLAML
Sbjct: 154 KEPGCVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEA----KEKEIANGRLAML 206
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
A LG+ VQ VTG GP NL HL+DP +N ++ +
Sbjct: 207 AYLGFSVQHAVTGKGPLDNLFQHLSDPWHNTIIQTF 242
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 127/234 (54%), Gaps = 18/234 (7%)
Query: 27 AQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP 86
A S R G+F R A Q A RP+WF ++LDGSL GDYGFDPL L
Sbjct: 2 ALSMIAQRRAGAFSARQAPRAVRAQAAVRPVWFPGNPPPAHLDGSLAGDYGFDPLFLGQE 61
Query: 87 EGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGL-IPQETALAWFQTG-VIPP 144
T KW E+++GR+AMLGA G I I K GL P+ W+ G V+
Sbjct: 62 PQT-----LKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGFPE-----WYDAGKVVVE 111
Query: 145 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 204
++ TL V++ LMG+AE +R+ D+ NPGS FLGF + G + YPG
Sbjct: 112 KNNIDF----PTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKGL-ENGYPG 166
Query: 205 GPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLL 257
G F+P+GL + D +++K KEVKNGRLAM+A LG+ Q TG GP NL+
Sbjct: 167 GRFFDPMGLSRGDAAKYQEYKQKEVKNGRLAMIACLGFAAQYAATGKGPLDNLV 220
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 120/216 (55%), Gaps = 23/216 (10%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W S +YLDGSLPGD GF PLGL+ DPE KW E++N R+AMLG G
Sbjct: 5 WLPGLASPTYLDGSLPGDXGFAPLGLAEDPENL------KWFVQAELVNVRWAMLGVAGM 58
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE+ G++ W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 59 LLPEVFTNIGIL---NVPKWYD------AGKEEYFASSSTLFVIEFILFHYVEIRRWQDI 109
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
NPGS+ + F+ Y + YPGG +FNPL ++ K KE+ NGRLAML
Sbjct: 110 KNPGSVNQXPI--FKNYSLPPNEVGYPGG-IFNPLNFAPTAEA----KEKEIANGRLAML 162
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
A LG+ VQ V G GP+ NLL HL+DP +N ++ +L
Sbjct: 163 AFLGFIVQHNVVGKGPFDNLLQHLSDPWHNTIVQTL 198
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/264 (36%), Positives = 139/264 (52%), Gaps = 25/264 (9%)
Query: 6 LVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSL 65
+ ++ SS+ ++ + AR A + +G +R R + ADR +WF
Sbjct: 1 MANAVAMSSLLGSKSAVAARPA-AFSGKARTARVQARFVAV----SAADRQVWFPGNAPA 55
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
+LDGSLPGD+GFDPL L SDP+ KW E+++GR AM G + P + K
Sbjct: 56 PHLDGSLPGDFGFDPLSLGSDPQLL------KWFQQAELVHGRTAMTAVAGILFPAVATK 109
Query: 125 AGL--IPQETALAWFQTGVIPPAGTYNYWADPYT-LFVLEMALMGFAEHRRFQDWANPGS 181
AG+ IPQ W+ G + N+ P+ L +++ L G+ E +R+ D+ NPGS
Sbjct: 110 AGVVNIPQ-----WYDAGSVWVQNNPNF---PFAALLFIQIILTGWVETKRWLDFKNPGS 161
Query: 182 MGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILG 240
FLG G + YPGG LF+P GL + E ++ ++ E+KNGRLAM+A LG
Sbjct: 162 QADGSFLGVTDDFKGVAN-GYPGGKLFDPFGLSRGSEGQLQKYQENEIKNGRLAMVAFLG 220
Query: 241 YFVQGLVTGVGPYQNLLDHLADPV 264
+ Q TG GP NL DHLA+P
Sbjct: 221 FIAQHAATGKGPIDNLADHLANPT 244
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 151/288 (52%), Gaps = 56/288 (19%)
Query: 1 MATQALVSSS------LTSSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQ 51
MAT A+ S+ L S E R++ GSS G +R S P +
Sbjct: 1 MATSAIQQSAFAGQTALKQSNELVRKV----------GSSGDGRITMRRTVKSAPQSIWY 50
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 51 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E+ WF+ G I G +Y +P ++
Sbjct: 105 AMLGALGCVFPEILAKNGVKFGESV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWA 162
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 163 SQVVLMGFVEGYRVG--GGP--------------LGEGLDPIYPGGA-FDPLGLADDPDA 205
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ ++TG GP +NLLDHLADPV NN
Sbjct: 206 FAELKVKELKNGRLAMFSMFGFFVQAIITGKGPIENLLDHLADPVANN 253
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 124/233 (53%), Gaps = 22/233 (9%)
Query: 42 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYG 101
R + + RPLW + S+L G LPGDYGFDPL L + + W
Sbjct: 23 RTVRSSVIASAESRPLWMPGTAAPSHLKGMLPGDYGFDPLNLGEDSK-----DLDWYVQA 77
Query: 102 EVINGRYAMLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYN-YWADPYTLF 158
E+ + R+AMLG G APE+L G+ +P W A YN Y+A TLF
Sbjct: 78 ELQHARWAMLGVAGMAAPELLTMFGVSDLPN-----WHD------APFYNGYFASSTTLF 126
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++M +M +AE RR+QD NPGS+ K +GD YPGG +FNP+ GK
Sbjct: 127 TVQMFMMNWAEIRRWQDIKNPGSVSEDPAFPGNKL--PAGDVGYPGG-IFNPMNYGKSTD 183
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
+K K KE+ NGRLAM+A LG F+Q TGVGP +NL HL++P NNV +
Sbjct: 184 ELKALKAKEIANGRLAMVAALGCFIQYDHTGVGPVENLTSHLSNPGVNNVFKA 236
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/280 (39%), Positives = 147/280 (52%), Gaps = 40/280 (14%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTP-PVKQGADRPLWF 59
MAT A+ SS+ +Q R + +G V+ STP + GADRP +
Sbjct: 1 MATSAIQSSAFAGQTSLKQQNELVRKVGNFSGGRATMRRTVK--STPQSIWYGADRPKYL 58
Query: 60 A--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G
Sbjct: 59 GPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGC 112
Query: 117 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGF 167
+ PEIL K G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 113 VFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGL 170
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R P LG D YPGG F+PLGL D ++ + K+KE
Sbjct: 171 IEGYRVG--GGP--------------LGEGLDKIYPGGS-FDPLGLADDPEAFAELKVKE 213
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 214 LKNGRLAMFSMFGFFVQAIVTGKGPVENLFDHLADPVANN 253
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 133/254 (52%), Gaps = 35/254 (13%)
Query: 34 SRKGSFVVRAASTPP-VKQ-------------GADR----PLWFASKQSLSYLDGSLPGD 75
SR+ S V+A++ P VK+ GA R P W YLDG+LPGD
Sbjct: 19 SRRSSVAVKASAVPENVKEARAWIDAWKSKQGGAKRDPSLPSWMPGATLPGYLDGTLPGD 78
Query: 76 YGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
+GFDPL L ++P + KW A E+++ R+AML G + PE+L G +
Sbjct: 79 FGFDPLYLGAEPS------KLKWYAQAELVHARFAMLAVAGILVPELLTNIGFSWPGAGV 132
Query: 135 AWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL 194
AW+ AG + Y+A +LF ++M L +AE RR+QD+ PGS + K
Sbjct: 133 AWYD------AGKFQYFAPASSLFGVQMLLFAWAELRRYQDFVKPGSANQDPIFSNNKLP 186
Query: 195 GGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 254
G+ +P YPGG +F+P G K + MK K KE+KNGRLAMLA G+ Q TG P +
Sbjct: 187 DGN-EPGYPGG-IFDPFGWSKGD--MKSLKTKEIKNGRLAMLAFAGFAAQAYTTGTTPLK 242
Query: 255 NLLDHLADPVNNNV 268
NL HLADP V
Sbjct: 243 NLATHLADPWATTV 256
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 122/217 (56%), Gaps = 24/217 (11%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W S +YLDGSL GD GFDPLGL+ DPE +W E++N R+AMLG G
Sbjct: 49 WLPGLASPAYLDGSLAGDNGFDPLGLAEDPENL------RWYVQAELVNARWAMLGVAGV 102
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE+L K G+I A W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 103 LVPEVLTKIGII---NAPQWYD------AGKSTYFASSSTLFVIEFILFHYVEIRRWQDI 153
Query: 177 -ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
NPG + + F+ Y + YPG +FNPL + + K KE+ NGRLAM
Sbjct: 154 IKNPGCVNQDPI--FKNYSLPPHECGYPGS-VFNPLNF----EPTLEAKEKELANGRLAM 206
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LA LG+ VQ +TG GP++NLL HL DP +N ++ +L
Sbjct: 207 LAFLGFMVQHGITGKGPFENLLQHLFDPWHNTIIQTL 243
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/251 (41%), Positives = 138/251 (54%), Gaps = 40/251 (15%)
Query: 32 GSSRKGSFVVR--AASTPP-VKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-D 85
GS G F +R S PP + G DRP + S+Q+ SYL G PGDYG+D GLS D
Sbjct: 6 GSFGGGRFSMRRTVKSAPPSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 65
Query: 86 PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPP 144
PE F + + L EVI+ R+AMLGA+G + PE+L K G+ E WF+ G I
Sbjct: 66 PET---FAKNREL---EVIHCRWAMLGALGCVFPEVLSKNGVKFGEAV--WFKAGAQIFS 117
Query: 145 AGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGG 196
G +Y +P ++ +++ LMGF E R G +G
Sbjct: 118 EGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYR----VGGGPLGEGL---------- 163
Query: 197 SGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 256
DP YPGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL
Sbjct: 164 --DPIYPGG-AFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 220
Query: 257 LDHLADPVNNN 267
DHLADPV NN
Sbjct: 221 FDHLADPVANN 231
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 132/240 (55%), Gaps = 37/240 (15%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
V +++ + + GADRP W S ++ SYL+G GDYG+D GLS DPE F +
Sbjct: 40 VSKSSGSDSIWYGADRPKWLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNR 96
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L K+G+ E WF+ G I G +Y +P
Sbjct: 97 EL---EVIHARWAMLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPS 151
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 152 LVHAQSILAIWASQVILMGAVEGYRVA--GGP--------------LGDVTDPIYPGGS- 194
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 195 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 254
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 106/279 (37%), Positives = 145/279 (51%), Gaps = 42/279 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
M + AL SL V + +G A+ + V ++A + + GADRP +
Sbjct: 7 MHSTALAGQSLVKPVNELSRKVGNVEARVTMRRT-----VSKSAGSDSIWYGADRPKFLG 61
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S ++ SYL+G GDYG+D GLS DPE F + L EVI+ R+AMLGA+G +
Sbjct: 62 PFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALGCL 115
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L K+G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 116 TPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV 173
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D + + K+KE+
Sbjct: 174 EGYRVA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDTFAELKVKEI 216
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 143/279 (51%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ S+ R S G V++A + G DRP +
Sbjct: 1 MATSAIQQSAFAGQTALKPSNELVRKVGSVGGGRITMRRTVKSAPQS-IWYGPDRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PEIL K G+ E WF+ G I G +Y +P ++ ++ LMGF
Sbjct: 114 FPEILAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 172 EGYRVG--GGP--------------LGEGLDPIYPGGA-FDPLGLADDPEAFAELKVKEI 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 148/287 (51%), Gaps = 55/287 (19%)
Query: 1 MATQALVSSSLTSSV------ETARQI--LGARSAQSPTGSSRKGSFVVRAASTPPVKQG 52
MAT A+ S+ T E R++ +G R + T S S + G
Sbjct: 1 MATSAIQQSAFTGQTALKNRDELVRKVGVVGGRVSMRRTVKSAPQS----------IWYG 50
Query: 53 ADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
ADRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+A
Sbjct: 51 ADRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWA 104
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++ +
Sbjct: 105 MLGALGCVFPELLSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 162
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMGF E R P LG DP YPGG F+PLGL D +
Sbjct: 163 QVVLMGFIEGYRIG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPDAF 205
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 206 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLYDHLADPATNN 252
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 144/277 (51%), Gaps = 40/277 (14%)
Query: 6 LVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVR---AASTPPVKQGADRPLWFA-- 60
+ +S++ SS + L R G F +R A + GADRP +
Sbjct: 1 MAASAIQSSAFAGQTALKQRDELVRKVGVSDGRFSMRRTVKAVPQSIWYGADRPKFLGPF 60
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G I P
Sbjct: 61 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCIFP 114
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L K G+ Q WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 115 ELLSKNGV--QFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEG 172
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 173 YRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKN 215
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANN 252
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/278 (39%), Positives = 146/278 (52%), Gaps = 46/278 (16%)
Query: 11 LTSSVETARQILGARSAQSPTGSSRK-GSF------VVRAASTPP--VKQGADRPLWFA- 60
+ +S G + + P RK GSF + R + P + G DRP +
Sbjct: 1 MAASAIQQSAFAGQTALKQPNDLVRKVGSFGGGRVTMRRTVKSAPQSIWYGPDRPKFLGP 60
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVF 114
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PEIL K G+ E+ WF+ G I G +Y +P ++ ++ LMGF E
Sbjct: 115 PEILAKNGVKFGESV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVE 172
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R P LG DP YPGG F+PLGL D + + K+KE+K
Sbjct: 173 GYRVG--GGP--------------LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKELK 215
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NLLDHLADPV NN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPVENLLDHLADPVANN 253
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 135/256 (52%), Gaps = 39/256 (15%)
Query: 21 ILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDP 80
++G R+ ++ S R S VRA++ +P+WF + +L G LPGDYGFDP
Sbjct: 10 VVGLRAPKTTKRSQR--SVSVRAST---------QPMWFPGMDAPQHLKGELPGDYGFDP 58
Query: 81 LGLSDPEGTGGFIEPK---WLAYGEVINGRYAMLGAVGAIAPEILGKAGL--IPQETALA 135
L L EPK W E+ +GR+AMLG GA APEIL K G+ +P
Sbjct: 59 LNLGK--------EPKDLEWYVQAELQHGRWAMLGVAGAAAPEILTKMGISDLPNWHDAP 110
Query: 136 WFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG 195
+Q Y+ D TLF ++M +M +AE RR+QD PGS+ K
Sbjct: 111 NYQ----------GYFTDATTLFWVQMLMMNWAEVRRWQDMRKPGSVNEDPAFSGNKL-- 158
Query: 196 GSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN 255
SG YPGG +F+PLG K + + K KE+ NGRLAM+A G VQ TGVGP N
Sbjct: 159 PSGIVGYPGG-IFDPLGYAKGD--LNKLKAKEIANGRLAMVAFAGIMVQYDHTGVGPVAN 215
Query: 256 LLDHLADPVNNNVLTS 271
L+ H++DP +NNV +
Sbjct: 216 LVAHMSDPAHNNVFQA 231
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 135/254 (53%), Gaps = 35/254 (13%)
Query: 34 SRKGSFVVRAASTPP-VKQG-ADRPLWFASKQSLS----------------YLDGSLPGD 75
SR+ S V+A++ P VK+ A W + + +LS YLDG+LPGD
Sbjct: 19 SRRSSVAVKASAVPENVKEARAWIDAWKSKQGALSRTPAFPAGCPAATLPGYLDGTLPGD 78
Query: 76 YGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
+GFDPL L ++P + KW A E+++ R+AML G + PE+L G +
Sbjct: 79 FGFDPLYLGAEPS------KLKWYAQAELVHARFAMLAVAGILVPELLTNIGFSWPGAGV 132
Query: 135 AWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL 194
AW+ AG + Y+A +LF ++M L +AE RR+QD+ PGS + K
Sbjct: 133 AWYD------AGKFQYFAPASSLFGVQMLLFAWAELRRYQDFVKPGSANQDPIFSNNKLP 186
Query: 195 GGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 254
G+ +P YPGG +F+P G K + MK K KE+KNGRLAMLA G+ Q TG P +
Sbjct: 187 DGN-EPGYPGG-IFDPFGWSKGD--MKSLKTKEIKNGRLAMLAFAGFAAQAYTTGTTPLK 242
Query: 255 NLLDHLADPVNNNV 268
NL HLADP V
Sbjct: 243 NLATHLADPWATTV 256
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 137/253 (54%), Gaps = 39/253 (15%)
Query: 29 SPTGSSRKGSFVVRAASTPP--VKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS 84
S G+S+ + R + P + G DRP + S+Q+ SYL G PGDYG+D GLS
Sbjct: 27 SKVGASQARITMRRTVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLS 86
Query: 85 -DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-I 142
DPE F + + L EVI+ R+AMLGA+G + PE+L K G+ E WF+ G I
Sbjct: 87 ADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLAKTGVKFGEAV--WFKAGAQI 138
Query: 143 PPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL 194
G +Y +P ++ ++ LMG E R P L
Sbjct: 139 FSEGGLDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYRVG--GGP--------------L 182
Query: 195 GGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 254
G DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +
Sbjct: 183 GEGLDPLYPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 241
Query: 255 NLLDHLADPVNNN 267
NL DHLADP NNN
Sbjct: 242 NLFDHLADPANNN 254
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 125/234 (53%), Gaps = 25/234 (10%)
Query: 43 AASTPPVKQGADRPLWFASKQSLSYLDG----SLPGDYGFDPLGL-SDPEGTGGFIEPKW 97
A S V R W + +LD ++ G++GFDPLGL D E +W
Sbjct: 15 AVSRKAVVTCVARQSWLPGSEIPKHLDSPAALAMAGNFGFDPLGLGKDAEAL------RW 68
Query: 98 LAYGEVINGRYAMLGAVGAIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYNYWADPY 155
E+++ R AM G + P +L KAG +P+ W+ G + ++ P+
Sbjct: 69 YQQAELVHARTAMTAVAGILIPGLLTKAGALNVPE-----WYDAGKVAIESSFA----PF 119
Query: 156 -TLFVLEMALMGFAEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGL 213
L +++ L GF E +R+QD+ PGS + FLGFE G+GD YPGG +F+PLGL
Sbjct: 120 GALLAVQLFLTGFVEAKRWQDFKKPGSQAEKGSFLGFETAFAGTGDNGYPGG-IFDPLGL 178
Query: 214 GKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KD + D+KLKE+KNGRLAM+A LG+ Q TG GP NL HLADP + N
Sbjct: 179 SKDADKLADWKLKEIKNGRLAMVAFLGFTAQKFATGKGPIDNLAAHLADPWHVN 232
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 115/282 (40%), Positives = 149/282 (52%), Gaps = 44/282 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQGADRPL 57
MAT A+ S+ T +TA + L + TG + KG +R S P + G DRP
Sbjct: 1 MATSAIQQSAFTG--QTALKQLNEFVRK--TGGAGKGRTNMRRTVKSAPQSIWYGPDRPK 56
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S+Q SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+
Sbjct: 57 YLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGAL 110
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G PEIL K G+ E WF+ G I G +Y +P ++ +++ LM
Sbjct: 111 GCTFPEILEKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLM 168
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
GF E R P LG DP YPGG F+PLGL D + + K+
Sbjct: 169 GFVEGYRVG--GGP--------------LGEGLDPIYPGGA-FDPLGLADDPDAFAELKV 211
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 144/279 (51%), Gaps = 39/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA + SS T + + + + + Q S + + + +P G DR +
Sbjct: 1 MAAATMALSSSTFAGKAVKNLSSSSEVQGDARVSMRKTAATKKVGSP--WYGPDRVKYLG 58
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S +S SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G +
Sbjct: 59 PFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHGRWAMLGALGCV 112
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L + G+ E WF+ G I G Y +P ++ ++ LMG
Sbjct: 113 FPELLARNGVKFGEAV--WFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAV 170
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 171 EGYRVA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDAEAFAELKVKEI 213
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 214 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/279 (39%), Positives = 147/279 (52%), Gaps = 43/279 (15%)
Query: 2 ATQALVSSSLTSSVETA-RQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
AT AL S +L T+ R + G + RK + + A++ GADR L+
Sbjct: 4 ATMALTSRALVGKPATSTRDVFGEGRI-----TMRKTAGKPKPAASGSPWYGADRVLYLG 58
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S Q SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 59 PLSGQPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCV 112
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 113 FPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAV 170
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 171 EGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEI 213
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 214 KNGRLAMFSMFGFFVQAIVTGKGPVENLADHLADPVNNN 252
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 142/279 (50%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ S+ Q R S G V++A + G DRP +
Sbjct: 1 MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQS-IWYGEDRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G +
Sbjct: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PEIL K G+ E WF+ G I G +Y +P ++ ++ LMGF
Sbjct: 114 FPEILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG D YPGG F+PLGL D ++ + K+KE+
Sbjct: 172 EGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEI 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANN 253
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 107/279 (38%), Positives = 141/279 (50%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ S+ Q R S G V++A + G DRP +
Sbjct: 1 MATSAIQQSAFAGQTALKSQNEFIRKIGSFEGGRVTMRRTVKSAPQS-IWYGEDRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+Q+ SYL G PGDYG+D GLS DPE +E EVI+ R+AMLGA+G +
Sbjct: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNLEL------EVIHCRWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PEIL K G+ E WF+ G I G +Y +P ++ ++ LMGF
Sbjct: 114 FPEILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG D YPGG F+PLGL D ++ + K+KE+
Sbjct: 172 EGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEI 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANN 253
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 106/279 (37%), Positives = 145/279 (51%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ S+ + R + G+ V++A + G DRP +
Sbjct: 1 MATSAIQQSAFAGQTALKQSNELVRKVGALGGARFTMRRTVKSAPQS-IWYGPDRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L K G+ E+ WF+ G I G +Y +P ++ ++ LMGF
Sbjct: 114 FPELLAKNGVKFGESV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D + + K+KE+
Sbjct: 172 EGYRVG--GGP--------------LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKEL 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 149/282 (52%), Gaps = 46/282 (16%)
Query: 2 ATQALVSSSLTSSV----ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPL 57
+T AL S SL + TA +ILG + RK + ++ S+ G DR
Sbjct: 4 STMALSSPSLAGKMVKLAPTASEILGEGRI-----TMRKTAGKTKSVSSDSPWYGPDRVK 58
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+
Sbjct: 59 YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FTKNREL---EVIHCRWAMLGAL 112
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 113 GCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILM 170
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
G E R P LG DP YPGG F+PLGL +D ++ + K+
Sbjct: 171 GAIEGYRVA--GGP--------------LGEVTDPLYPGGS-FDPLGLAEDPEAFAELKV 213
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 142/274 (51%), Gaps = 38/274 (13%)
Query: 6 LVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQ 63
+ +S+L + Q L AR+A G V++ + G DRP + S+Q
Sbjct: 1 MAASALHQTTSFLGQALVARAAGVDAGDRITMRRTVKSVPQS-IWYGPDRPKYLGPFSEQ 59
Query: 64 SLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIL 122
+ SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G + PEIL
Sbjct: 60 TPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEIL 113
Query: 123 GKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRF 173
K G+ E WF+ G I G +Y +P ++ ++ LMGF E R
Sbjct: 114 AKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRV 171
Query: 174 QDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRL 233
P LG D YPGG F+PLGL D + + K+KE+KNGRL
Sbjct: 172 G--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDTAAELKVKELKNGRL 214
Query: 234 AMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
AM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 215 AMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 248
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 114/282 (40%), Positives = 148/282 (52%), Gaps = 44/282 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQGADRPL 57
MAT A+ S+ +TA + L + TG + KG +R S P + G DRP
Sbjct: 1 MATSAIQQSAFAG--QTALKQLNELVRK--TGGAGKGRTTMRRTVKSAPQSIWYGPDRPK 56
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S+Q SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+
Sbjct: 57 YLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGAL 110
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G PEIL K G+ E WF+ G I G +Y +P ++ +++ LM
Sbjct: 111 GCTFPEILEKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLM 168
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
GF E R P LG DP YPGG F+PLGL D + + K+
Sbjct: 169 GFVEGYRVG--GGP--------------LGEGLDPIYPGGA-FDPLGLADDPDAFAELKV 211
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 107/281 (38%), Positives = 146/281 (51%), Gaps = 42/281 (14%)
Query: 1 MATQALVSSSLT--SSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW 58
MAT A+ S+ ++++ + +++ A G R ++ + G DRP +
Sbjct: 1 MATSAIQQSAFAGQTALKQSNELVCKIGA---VGGGRVSMRRTVKSAPTSIWYGPDRPKY 57
Query: 59 FA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
S Q SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G
Sbjct: 58 LGPFSDQIPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALG 111
Query: 116 AIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMG 166
+ PEIL K G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 112 CVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG 169
Query: 167 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
F E R P LG DP YPGG F+PLGL D + + K+K
Sbjct: 170 FVEGYRVG--GGP--------------LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVK 212
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
E+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 107/279 (38%), Positives = 145/279 (51%), Gaps = 42/279 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
M + AL SL V + +G + S R V ++A + + GADRP +
Sbjct: 7 MHSTALAGQSLFQPVNELSRKVG--NVDSRVTMRRT---VNKSAGSDSIWYGADRPKFLG 61
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S ++ SYL+G GDYG+D GLS DPE F + L EVI+ R+AMLGA+G +
Sbjct: 62 PFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALGCL 115
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L K+G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 116 TPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV 173
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D + + K+KE+
Sbjct: 174 EGYRVA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDTFAELKVKEI 216
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 144/279 (51%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ S+ +Q R S GSSR ++ + G DRP +
Sbjct: 1 MATSAIQHSAFAGQTVLKQQNELVRKVGS-FGSSRTTMRRTVKSTPQSIWYGPDRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PEIL K G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 114 FPEILAKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGLI 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG D YPGG F+PLGL D ++ + K+KE+
Sbjct: 172 EGYRIG--GGP--------------LGEGLDSLYPGGA-FDPLGLADDPEAFAELKVKEL 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPVENLYDHLADPVANN 253
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 111/279 (39%), Positives = 142/279 (50%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ S+ T + R A S G SR ++ + G DRP +
Sbjct: 1 MATSAIQQSAFTGKTGLKQGNEFIRKAGS-FGQSRFTMRRTVKSAPESIWYGPDRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+Q SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G
Sbjct: 60 PFSEQIPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCT 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PEIL K G+ E WF+ G I G +Y +P ++ ++ LMGF
Sbjct: 114 FPEILEKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D + + K+KE+
Sbjct: 172 EGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPDAFAELKVKEL 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPVANN 253
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 150/283 (53%), Gaps = 44/283 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSR----KGSFVVRAASTPPVKQGADRP 56
MAT + +L+SS + + + S+ TG+ R K + + AS+ G DR
Sbjct: 1 MATSTM---ALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRV 57
Query: 57 LWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGA 113
+ S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA
Sbjct: 58 KYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGA 111
Query: 114 VGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMAL 164
+G + PE+L + G+ E WF+ G I G +Y +P ++ ++ L
Sbjct: 112 LGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVL 169
Query: 165 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 224
MG E R G +G DP YPGG F+PLGL D ++ + K
Sbjct: 170 MGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELK 212
Query: 225 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 132/240 (55%), Gaps = 37/240 (15%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
V ++A + + GADRP + S ++ SYL+G GDYG+D GLS DPE F +
Sbjct: 41 VNKSAGSDSIWYGADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNR 97
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L K+G+ E WF+ G I G +Y +P
Sbjct: 98 EL---EVIHARWAMLGALGCVTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPS 152
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 153 LVHAQSILAIWACQVILMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS- 195
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 196 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 143/282 (50%), Gaps = 44/282 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQGADRPL 57
MAT A S+ + R TG S KG +R S P + G DRP
Sbjct: 1 MATTAFQQSAFAGQTALKQVNEFVRK----TGGSGKGRTNMRRTVKSAPQSIWYGPDRPK 56
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S Q SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+
Sbjct: 57 YLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGAL 110
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G + PEIL K G+ E WF+ G I G +Y +P ++ +++ LM
Sbjct: 111 GIVFPEILEKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLM 168
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
GF E R P LG DP YPGG F+PLGL D + + K+
Sbjct: 169 GFVEGYRVG--GGP--------------LGEGLDPIYPGGA-FDPLGLADDPDAFAELKV 211
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 212 KELKNGRLAMFSVFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 143/279 (51%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ S+ Q R S G VR+A + G DRP +
Sbjct: 1 MATSAIQRSAFAGQTALKPQNELVRKIGSLGGGRITMRRTVRSAPES-IWYGPDRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PEIL + G+ E WF+ G I G +Y +P ++ ++ LMGF
Sbjct: 114 FPEILARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG D YPGG F+PLGL D ++ + K+KE+
Sbjct: 172 EGYRVG--GGP--------------LGEGLDKIYPGGS-FDPLGLADDPEAFAELKVKEL 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 253
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/270 (38%), Positives = 141/270 (52%), Gaps = 44/270 (16%)
Query: 17 TARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQ-------GADRPLWFA--SKQSLSY 67
T+R ++G + S +G +R + P GADR L+ S + SY
Sbjct: 9 TSRALVGKPATTSTRDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPFSGEPPSY 68
Query: 68 LDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAG 126
L G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G
Sbjct: 69 LTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNG 122
Query: 127 LIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWA 177
+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 123 VKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVA--G 178
Query: 178 NPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLA 237
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM +
Sbjct: 179 GP--------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFS 223
Query: 238 ILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 224 MFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 147/281 (52%), Gaps = 39/281 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSR--KGSFVVRAASTPPVKQGADRPLW 58
MAT A +S + + + + S + G +R V +++ + + GADRP +
Sbjct: 1 MATAATAMNSTVLAGQALLKPVSELSRKVNAGEARVTMRKTVSKSSGSDSIWYGADRPKF 60
Query: 59 FA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
S ++ SYL+G GDYG+D GLS DPE F + L EVI+ R+AMLGA+G
Sbjct: 61 LGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALG 114
Query: 116 AIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMG 166
+ PE+L K+G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 115 CLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMG 172
Query: 167 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
E R P LG DP YPGG F+PLGL D + + K+K
Sbjct: 173 AVEGYRVA--GGP--------------LGDVTDPIYPGGS-FDPLGLADDPDTFAELKVK 215
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
E+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 256
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 131/240 (54%), Gaps = 37/240 (15%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
V ++A + + GADRP + S ++ SYL G GDYG+D GLS DPE F +
Sbjct: 41 VSKSAGSDSIWYGADRPKFLGPFSGETPSYLTGEFAGDYGWDTAGLSSDPET---FARNR 97
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L K+G+ E WF+ G I G +Y +P
Sbjct: 98 EL---EVIHARWAMLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPS 152
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 153 LVHAQSILAIWACQVVLMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS- 195
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 196 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 131/236 (55%), Gaps = 38/236 (16%)
Query: 45 STP-PVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAY 100
STP + G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L
Sbjct: 43 STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL-- 97
Query: 101 GEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP----- 154
EVI+ R+AMLGA+G + PEIL K G+ E WF+ G I G +Y +P
Sbjct: 98 -EVIHCRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHA 154
Query: 155 ---YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL 211
++ ++ LMGF E R P LG D YPGG F+PL
Sbjct: 155 QSILAIWACQVVLMGFVEGYRVG--GGP--------------LGEGLDAIYPGGA-FDPL 197
Query: 212 GLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL+DHLADPV NN
Sbjct: 198 GLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLVDHLADPVANN 253
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 143/279 (51%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ S+ Q R S G V++A + G DRP +
Sbjct: 1 MATSAIQQSAFAGQTALKPQNELVRKVGSFGGGHITMRRTVKSAPES-IWYGPDRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PEIL K G+ E WF+ G I G +Y +P ++ ++ LMGF
Sbjct: 114 FPEILAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG D YPGG F+PLGL D ++ + K+KE+
Sbjct: 172 EGYRVG--GGP--------------LGWGLDKIYPGGS-FDPLGLADDPEAFAELKVKEL 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 253
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 145/282 (51%), Gaps = 44/282 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQGADRPL 57
MAT A+ S+ S Q TGS G F +R S P + G DRP
Sbjct: 1 MATSAIQQSAFAGSAALKPQ----NELVKKTGSFTGGRFTMRRTVKSAPQSIWYGPDRPK 56
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+
Sbjct: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGAL 110
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G + PE+L K G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 111 GCVFPEVLSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLM 168
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
G E R P LG D YPGG F+PLGL D ++ + K+
Sbjct: 169 GLIEGYRVG--GGP--------------LGEGLDKIYPGGS-FDPLGLADDPEAFAELKV 211
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPV NN
Sbjct: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLSDPVANN 253
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 143 bits (361), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 144/279 (51%), Gaps = 44/279 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
M + AL SL V + +G A+ S RK + S+ + GADRP +
Sbjct: 7 MHSTALAGQSLLKPVNELSRKVGNVEARI---SMRK----TASKSSDSIWYGADRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S ++ SYL+G GDYG+D GLS DPE F + L EVI+ R+AMLGA+G +
Sbjct: 60 PFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L K G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 114 TPELLAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D + + K+KE+
Sbjct: 172 EGYRVA--GGP--------------LGDVTDPIYPGGS-FDPLGLADDPDTFAELKVKEI 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 253
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 151/284 (53%), Gaps = 48/284 (16%)
Query: 1 MATQALVSSSLT--SSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQGADR 55
MAT A+ SS ++++ + ++L G S G +R STP + G DR
Sbjct: 1 MATSAIQQSSFAGQTALKPSNELL------RKVGVSGGGRVTMRRTVKSTPQSIWYGPDR 54
Query: 56 PLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
P + S+ + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLG
Sbjct: 55 PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLG 108
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMA 163
A+G PEIL K G+ E WF+ G I G +Y +P ++ +++
Sbjct: 109 ALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVV 166
Query: 164 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
LMGF E R P LG DP YPGG F+PL L +D ++ +
Sbjct: 167 LMGFIEGYRIG--GGP--------------LGEGLDPLYPGGA-FDPLNLAEDPEAFSEL 209
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 105/274 (38%), Positives = 142/274 (51%), Gaps = 38/274 (13%)
Query: 6 LVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQ 63
+ +S+L + Q L +R+A G V++ + G DRP + S+Q
Sbjct: 1 MAASALHQTTSFLGQALVSRAAGVDAGGRITMRRTVKSVPQS-IWYGPDRPKYLGPFSEQ 59
Query: 64 SLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIL 122
+ SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G + PEIL
Sbjct: 60 TPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEIL 113
Query: 123 GKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRF 173
K G+ E WF+ G I G +Y +P ++ ++ LMGF E R
Sbjct: 114 AKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRV 171
Query: 174 QDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRL 233
P LG D YPGG F+PLGL D + + K+KE+KNGRL
Sbjct: 172 G--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDTAAELKVKELKNGRL 214
Query: 234 AMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
AM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 215 AMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 248
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 138/248 (55%), Gaps = 37/248 (14%)
Query: 34 SRKGSFVVRAA--STPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEG 88
S + V+R + S+ + G DRPL+ S + SYL G PGDYG+D GLS DPE
Sbjct: 30 SNQARVVMRGSKSSSGSMWYGPDRPLFLGPFSGNTPSYLKGEFPGDYGWDTAGLSADPES 89
Query: 89 TGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGT 147
F + L E+I+GR+AMLGA+G I PE+L K + + + WF+ G I G
Sbjct: 90 ---FARNRAL---ELIHGRWAMLGALGCITPELLQKYSRVTLKEPV-WFKAGAQIFSDGG 142
Query: 148 YNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGD 199
+Y +P ++ +++ LMG E R PG G G
Sbjct: 143 LDYLGNPNLIHAQSILAVWAVQVVLMGAVEAYRTNGL--PGV--------------GEGG 186
Query: 200 PAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDH 259
YPGG F+PLGL D +++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDH
Sbjct: 187 DLYPGGKYFDPLGLADDPETLAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLLDH 246
Query: 260 LADPVNNN 267
LA+PV+NN
Sbjct: 247 LANPVSNN 254
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 128/231 (55%), Gaps = 37/231 (16%)
Query: 49 VKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVIN 105
+ G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+
Sbjct: 2 CRYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIH 55
Query: 106 GRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YT 156
R+AMLGA+G + PEIL K G+ E WF+ G I G +Y +P
Sbjct: 56 SRWAMLGALGCVFPEILSKNGIKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILA 113
Query: 157 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKD 216
++ ++ LMGF E R G +G D YPGG F+PLGL D
Sbjct: 114 IWACQVVLMGFIEGYR----VGGGPLGEGL------------DIIYPGGA-FDPLGLADD 156
Query: 217 EKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 157 PDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLFDHIADPVNNN 207
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 114/282 (40%), Positives = 148/282 (52%), Gaps = 44/282 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQGADRPL 57
MAT A+ S+ +TA + L + TG + KG +R S P + G DRP
Sbjct: 1 MATSAIQQSAFAG--QTALKQLNELVRK--TGGAGKGRTNMRRTVKSAPQSIWYGPDRPK 56
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S+Q SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+
Sbjct: 57 YLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGAL 110
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G PEIL K G+ E WF+ G I G +Y +P ++ +++ LM
Sbjct: 111 GCTFPEILEKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLM 168
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
GF E R P LG DP YPGG F+PLGL D + + K+
Sbjct: 169 GFVEGYRVG--GGP--------------LGEGLDPIYPGGA-FDPLGLADDPDAFAELKV 211
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 109/278 (39%), Positives = 145/278 (52%), Gaps = 46/278 (16%)
Query: 11 LTSSVETARQILGARSAQSPTGSSRK-GSF------VVRAASTPP--VKQGADRPLWFA- 60
+ +S G + + P RK GSF + R + P + G DRP +
Sbjct: 1 MAASAIQQSAFAGQTALKQPNDLVRKVGSFGGGRVTMRRTVKSAPQSIWYGPDRPKFLGP 60
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 61 FSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVF 114
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PEIL K G+ E+ WF+ G I G +Y +P ++ ++ LMGF E
Sbjct: 115 PEILAKNGVKFGESV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVE 172
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R P LG DP YPGG F+PLGL D + + K+KE+K
Sbjct: 173 GYRVG--GGP--------------LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKELK 215
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLA ++ G+FVQ +VTG GP +NLLDHLADPV NN
Sbjct: 216 NGRLATFSMFGFFVQAIVTGKGPVENLLDHLADPVANN 253
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 151/284 (53%), Gaps = 48/284 (16%)
Query: 1 MATQALVSSSLT--SSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQGADR 55
MAT A+ SS ++++ + ++L G S G +R STP + G DR
Sbjct: 1 MATSAIQQSSFAGQTALKPSNELL------RKVGVSGGGRVTMRRTVKSTPQSIWYGPDR 54
Query: 56 PLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
P + S+ + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLG
Sbjct: 55 PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLG 108
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMA 163
A+G PEIL K G+ E WF+ G I G +Y +P ++ +++
Sbjct: 109 ALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVV 166
Query: 164 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
LMGF E R P LG DP YPGG F+PL L +D ++ +
Sbjct: 167 LMGFIEGYRIG--GGP--------------LGEGLDPLYPGGA-FDPLNLAEDPEAFSEL 209
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 111/279 (39%), Positives = 141/279 (50%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ S+ T + R A S G SR ++ + G DRP +
Sbjct: 1 MATSAIQQSAFTGKTGLKQGNEFIRKAGS-FGQSRFTMRRTVKSAPESIWYGPDRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+Q SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G
Sbjct: 60 PFSEQIPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCT 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PEIL K G+ E WF+ G I G +Y +P ++ + LMGF
Sbjct: 114 FPEILEKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATRVVLMGFV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D + + K+KE+
Sbjct: 172 EGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPDAFAELKVKEL 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPVANN 253
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 98/228 (42%), Positives = 127/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 102
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 103 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWA 160
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 161 CQVVLMGFIEGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPDT 203
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 204 AAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLFDHVADPVNNN 251
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 133/245 (54%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + S+ GADR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 34 RKTAAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET--- 90
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 91 FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDY 145
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R P LG DP Y
Sbjct: 146 LGNPSLVHAQSILAIWACQVVLMGAVEGYRIA--GGP--------------LGEVVDPLY 189
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KEVKNGRLAM ++ G+FVQ +VTG GP +NL DHLAD
Sbjct: 190 PGGS-FDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 248
Query: 263 PVNNN 267
PVNNN
Sbjct: 249 PVNNN 253
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 146/279 (52%), Gaps = 37/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ SS + + + + + + + RK + + S+ G+DR L+
Sbjct: 1 MATTAMALSSSSFAGKAVKDLPSSALFGEARVTMRKTAAKAKPVSSSSPWYGSDRVLYLG 60
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 61 PLSGDPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCV 114
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 115 FPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV 172
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R G +G DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 173 EGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAFAELKVKEI 215
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 144/287 (50%), Gaps = 50/287 (17%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ + A ++S Q+LG + G + +R A+T + A W+
Sbjct: 6 IGSCAFAGGQISSLKPHTNQLLGVGA-----GVHGEARVTMRKATTKKLTASASTSPWYG 60
Query: 61 SKQSL----------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
+ L SYL G PGDYG+D GLS DPE F + + L EVI+ R+A
Sbjct: 61 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPEN---FAKNREL---EVIHCRWA 114
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 172
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R P LG DP YPGG F+PLGL +D ++
Sbjct: 173 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLAEDPEAF 215
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 130/238 (54%), Gaps = 37/238 (15%)
Query: 42 RAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWL 98
+A+S+ + GADRP + S ++ SYL G GDYG+D GLS DPE F + L
Sbjct: 39 KASSSDSIWYGADRPKYLGPLSGETPSYLTGEFAGDYGWDTAGLSSDPET---FARNREL 95
Query: 99 AYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--- 154
EVI+ R+AMLGA+G + PE+L K G+ E WF+ G I G +Y +P
Sbjct: 96 ---EVIHARWAMLGALGCVTPELLAKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLV 150
Query: 155 -----YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN 209
++ ++ LMG E R P LG DP YPGG F+
Sbjct: 151 HAQSILAIWASQVILMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS-FD 193
Query: 210 PLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 194 PLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVANN 251
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 128/228 (56%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 50 GPDRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHARW 103
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G I PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 104 AMLGALGCIFPELLSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWA 161
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMGF E R P LG DP YPGG F+PLGL D ++
Sbjct: 162 TQVVLMGFIEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEA 204
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 205 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVANN 252
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 107/279 (38%), Positives = 142/279 (50%), Gaps = 46/279 (16%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
M + L SL V + +G A+ S RK S + + GADRP +
Sbjct: 7 MHSTTLAGQSLLKPVNELSRKVGTSEARV---SMRKSS------GSDSIWYGADRPKFLG 57
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S ++ SYL+G GDYG+D GLS DPE F + L EVI+ R+AMLGA+G +
Sbjct: 58 PFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALGCV 111
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L K G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 112 TPELLAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV 169
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D + + K+KE+
Sbjct: 170 EGYRVA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDTFAELKVKEI 212
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 213 KNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 251
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 113/286 (39%), Positives = 149/286 (52%), Gaps = 52/286 (18%)
Query: 1 MATQALVSSS------LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTP-PVKQGA 53
MAT A+ S+ L S E R+I G + + K STP + G
Sbjct: 1 MATSAIQQSAFAGQTALKQSNELIRKIGGLGGGRITMRRTVK--------STPQSIWYGP 52
Query: 54 DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAM 110
DRP + S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+ R+AM
Sbjct: 53 DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNGEL---EVIHSRWAM 106
Query: 111 LGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLE 161
LGA+G + PEIL K G+ E WF+ G I G +Y +P ++ ++
Sbjct: 107 LGALGCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAVQ 164
Query: 162 MALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMK 221
+ LMGF E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 VVLMGFVEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEAFA 207
Query: 222 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 208 ELKVKELKNGRLAMTSMFGFFVQAIVTGKGPVENLYDHVADPVANN 253
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/253 (39%), Positives = 136/253 (53%), Gaps = 39/253 (15%)
Query: 29 SPTGSSRKGSFVVRAASTPP--VKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS 84
S G+S+ + R + P + G DRP + S+Q+ SYL G PGDY +D GLS
Sbjct: 27 SKVGASQARITMRRTVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYRWDTAGLS 86
Query: 85 -DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-I 142
DPE F + + L EVI+ R+AMLGA+G + PE+L K G+ E WF+ G I
Sbjct: 87 ADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLAKTGVKFGEAV--WFKAGAQI 138
Query: 143 PPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL 194
G +Y +P ++ ++ LMG E R P L
Sbjct: 139 FSEGGLDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYRVG--GGP--------------L 182
Query: 195 GGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 254
G DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +
Sbjct: 183 GEGLDPLYPGGA-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 241
Query: 255 NLLDHLADPVNNN 267
NL DHLADP NNN
Sbjct: 242 NLFDHLADPANNN 254
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 148/280 (52%), Gaps = 44/280 (15%)
Query: 2 ATQALVSSSLTSSV-ETARQILG-ARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
AT AL S + + T+ + G AR T + K AAS+ GADR L+
Sbjct: 4 ATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPK-----PAASSGSPWYGADRVLYL 58
Query: 60 A--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G
Sbjct: 59 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGC 112
Query: 117 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGF 167
+ PE+L + G+ E WF+ G I G +Y +P ++ +++ LMG
Sbjct: 113 VFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGA 170
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R G +G DP YPGG F+PLGL D ++ + K+KE
Sbjct: 171 VEGYRIAG----GPLGEVV------------DPLYPGG-AFDPLGLADDPEAFAELKVKE 213
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 214 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 133/243 (54%), Gaps = 39/243 (16%)
Query: 39 FVVRAASTPP--VKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFI 93
F+ R + P + G DRP + S+Q+ SYL G PGDYG+D GLS DPE F
Sbjct: 35 FMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FA 91
Query: 94 EPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWA 152
+ L EVI+ R+AMLGA+G + PE+L K G+ Q WF+ G I G +Y
Sbjct: 92 RNREL---EVIHSRWAMLGALGCVFPELLSKNGV--QFGEAVWFKAGSQIFSEGGLDYLG 146
Query: 153 DP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 204
+P ++ ++ LMGF E R G +G D YPG
Sbjct: 147 NPNLVHAQSILAIWACQVVLMGFVEGYR----VGGGPLGEDL------------DKLYPG 190
Query: 205 GPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 264
G F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL+DH+ADPV
Sbjct: 191 GA-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLVDHIADPV 249
Query: 265 NNN 267
NN
Sbjct: 250 ANN 252
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 150/284 (52%), Gaps = 48/284 (16%)
Query: 1 MATQALVSSSLT--SSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQGADR 55
MAT A+ S+ T ++++ ++L R A G KG F +R S P + G DR
Sbjct: 1 MATSAIQQSAFTGQTALKQGNELL--RKA----GGFGKGRFTMRRTVKSAPQSIWYGPDR 54
Query: 56 PLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
P + S+Q SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLG
Sbjct: 55 PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLG 108
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMA 163
A+G PEIL + G+ E WF+ G I G +Y +P ++ ++
Sbjct: 109 ALGCTFPEILERNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVV 166
Query: 164 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
LMG E R P LG DP YPGG F+PLGL D + +
Sbjct: 167 LMGLIEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPDAFAEL 209
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 152/284 (53%), Gaps = 48/284 (16%)
Query: 1 MATQALVSSSLT--SSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQGADR 55
MAT A+ SS ++++ + +L R A G S G +R STP + G DR
Sbjct: 1 MATSAIQQSSFAGQTALKPSNDLL--RKA----GVSGGGRVTMRRTVKSTPQSIWYGPDR 54
Query: 56 PLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
P + S+ + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLG
Sbjct: 55 PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLG 108
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMA 163
A+G PEIL K G+ E WF+ G I G +Y +P ++ +++
Sbjct: 109 ALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVV 166
Query: 164 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
LMGF E R P LG DP YPGG F+PL L +D ++ +
Sbjct: 167 LMGFIEGYRIG--GGP--------------LGEGLDPLYPGGA-FDPLNLAEDPEAFSEL 209
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/279 (38%), Positives = 141/279 (50%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ S+ Q R S G V++A + G DRP +
Sbjct: 1 MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQS-IWYGEDRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G +
Sbjct: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PEIL K G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 114 FPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLI 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG D YPGG F+PLGL D ++ + K+KE+
Sbjct: 172 EGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEI 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 110/285 (38%), Positives = 150/285 (52%), Gaps = 49/285 (17%)
Query: 1 MATQALVSSSLT--SSVETARQILGARSAQSPTGSSRKGSFVV--RAASTPP--VKQGAD 54
MAT A+ SS T ++++ + +L G+S G V+ R + P + G D
Sbjct: 1 MATSAIQYSSFTGQTALKPSNDLL------RKVGASNGGGRVIMRRTVKSTPQSIWYGPD 54
Query: 55 RPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAML 111
RP + S+ + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AML
Sbjct: 55 RPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAML 108
Query: 112 GAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEM 162
GA+G PEIL K G+ E WF+ G I G +Y P ++ ++
Sbjct: 109 GALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGSPNLIHAQSILAIWACQV 166
Query: 163 ALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKD 222
LMGF E R P LG DP YPGG F+PL L +D ++ +
Sbjct: 167 VLMGFIEGYRIG--GGP--------------LGEGLDPLYPGGA-FDPLNLAEDPEAFSE 209
Query: 223 FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 140/283 (49%), Gaps = 50/283 (17%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQS 64
A ++S Q+LG + G + +R A+T V A W+ +
Sbjct: 10 AFAGGQISSLKPHTNQLLGVGA-----GVHGEARVTMRKATTKKVSASASTSPWYGPDRV 64
Query: 65 L----------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGA 113
L SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA
Sbjct: 65 LYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGA 118
Query: 114 VGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMAL 164
+G + PE+L + G+ E WF+ G I G +Y +P ++ ++ L
Sbjct: 119 LGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 176
Query: 165 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 224
MG E R P LG DP YPGG F+PLGL D + + K
Sbjct: 177 MGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAFAELK 219
Query: 225 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 220 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLTDHLADPVNNN 262
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/282 (37%), Positives = 146/282 (51%), Gaps = 48/282 (17%)
Query: 6 LVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA----- 60
+ SS++ S A + + + S + K + A+ PV G+ LW+
Sbjct: 1 MASSTMALSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSGS---LWYGPDRVK 57
Query: 61 -----SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+
Sbjct: 58 YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGAL 111
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 112 GCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILM 169
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
G E R P LG DP YPGG F+PLGL +D ++ + K+
Sbjct: 170 GAVEGYRVA--GGP--------------LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKV 212
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 213 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 132/240 (55%), Gaps = 37/240 (15%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
V +++ + + GADRP + S ++ SYL+G GDYG+D GLS DPE F +
Sbjct: 41 VSKSSGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNR 97
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L K+G+ E WF+ G I G +Y +P
Sbjct: 98 EL---EVIHARWAMLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPS 152
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 153 LVHAQSILAIWACQVILMGAVEGYRVA--GGP--------------LGDVTDPIYPGGS- 195
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 196 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 130/239 (54%), Gaps = 35/239 (14%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKW 97
V ++A + + GADRP + S ++ SYL+G GDYG+D GLS T F +
Sbjct: 41 VSKSARSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDLET--FARNRE 98
Query: 98 LAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP-- 154
L EVI+ R+AMLGA+G + PE+L K+G+ E WF+ G I G +Y +P
Sbjct: 99 L---EVIHARWAMLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSL 153
Query: 155 ------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLF 208
++ ++ LMG E R P LG DP YPGG F
Sbjct: 154 VHAQSILAIWACQVVLMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS-F 196
Query: 209 NPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 197 DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/251 (40%), Positives = 136/251 (54%), Gaps = 39/251 (15%)
Query: 31 TGSSRKGSFVVRAASTPP--VKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-D 85
G+S+ + R + P + G DRP + S+Q+ SYL G PGDYG+D GLS D
Sbjct: 9 VGASQARITMRRTVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 68
Query: 86 PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPP 144
PE F + + L EVI+ R+AMLGA+G + PE+L K G+ E WF+ G I
Sbjct: 69 PET---FAKNREL---EVIHSRWAMLGALGCVFPELLAKNGVKFGEAV--WFKAGAQIFS 120
Query: 145 AGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGG 196
G +Y +P ++ ++ LMG E R P LG
Sbjct: 121 EGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVG--GGP--------------LGE 164
Query: 197 SGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 256
DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL
Sbjct: 165 GLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 223
Query: 257 LDHLADPVNNN 267
DHLADPV NN
Sbjct: 224 YDHLADPVANN 234
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/282 (40%), Positives = 146/282 (51%), Gaps = 49/282 (17%)
Query: 2 ATQALVSSSLTSSV----ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPL 57
+T AL S SL + A QILG S RK F +A S P G DR L
Sbjct: 4 STMALSSPSLAGTAVKLGPNASQILGGGRV-----SMRKTGF--KAPSGSPW-YGPDRVL 55
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+
Sbjct: 56 YLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGAL 109
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 110 GCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILM 167
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
G E R P LG DP YPGG F+PLGL D ++ + K+
Sbjct: 168 GAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKV 210
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 211 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 151/284 (53%), Gaps = 47/284 (16%)
Query: 1 MATQALVSSSLT--SSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQGADR 55
MAT A+ SS ++++ + +L A S+ G ++R STP + G DR
Sbjct: 1 MATSAIQHSSFAGQTTLKPSNDLLRKIGA-----SNGGGRIIMRRTVKSTPQSIWYGPDR 55
Query: 56 PLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
P + S+ + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLG
Sbjct: 56 PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLG 109
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMA 163
A+G PEIL K G+ E WF+ G I G +Y +P ++ ++
Sbjct: 110 ALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 167
Query: 164 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
LMGF E R P LG DP YPGG F+PL L +D ++ +
Sbjct: 168 LMGFIEGYRIG--GGP--------------LGEGLDPLYPGGA-FDPLNLAEDPEAFSEL 210
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 211 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/280 (37%), Positives = 149/280 (53%), Gaps = 43/280 (15%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-----DRPLWF 59
A + +L+SS + + + S+ TG+ K + A+ PV G+ DR +
Sbjct: 2 AASTMALSSSSFAGKAVKLSPSSSEITGNG-KVTMRKTASKAKPVSSGSPWYGPDRVKYL 60
Query: 60 A--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G
Sbjct: 61 GPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGC 114
Query: 117 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGF 167
+ PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 115 VFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 172
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R G +G DP YPGG F+PLGL +D ++ + K+KE
Sbjct: 173 VEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAFAELKVKE 215
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 148/278 (53%), Gaps = 44/278 (15%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
AT AL S +L + A ++ G + RK + + A++ GADR L+
Sbjct: 4 ATMALSSPALAG--KAAAKVFGEGRI-----TMRKSAAKPKPAASGSPWYGADRVLYLGP 56
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 57 LSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVF 110
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y +P ++ +++ LMG E
Sbjct: 111 PELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVE 168
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R G +G DP YPGG F+PLGL D ++ + K+KE+K
Sbjct: 169 GYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKVKEIK 211
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 212 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 249
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 150/282 (53%), Gaps = 47/282 (16%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTP--PVKQGA-----DRPL 57
A + +L+SS + + + S+ TG+ G +R +T PV G+ DR
Sbjct: 2 AASTMALSSSSFVGKAVKLSPSSSEITGN---GKVTMRKTATKAKPVSSGSPWYGPDRVK 58
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+
Sbjct: 59 YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGAL 112
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 113 GCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLM 170
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
G E R G +G DP YPGG F+PLGL +D ++ + K+
Sbjct: 171 GAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAFAELKV 213
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 144/282 (51%), Gaps = 44/282 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVR--AASTPP-VKQGADRPL 57
MAT A+ S+ T + R A G+ + F +R S P + G DRP
Sbjct: 1 MATSAIQQSAFTGKTGLRQGNEFIRKA----GNFGQARFTMRRTVKSAPESIWYGPDRPK 56
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S+Q SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+
Sbjct: 57 YLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGAL 110
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G PE+L K G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 111 GCTFPELLEKNGVKFGEAV--WFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLM 168
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
GF E R P LG DP YPGG F+PLGL D S + K+
Sbjct: 169 GFVEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPDSFAELKV 211
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 212 KELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 131/238 (55%), Gaps = 37/238 (15%)
Query: 42 RAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWL 98
++A + + GADRP + S ++ SYL+G GDYG+D GLS DPE F + L
Sbjct: 39 KSAGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL 95
Query: 99 AYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--- 154
EVI+ R+AMLGA+G + PE+L K+G+ E WF+ G I G +Y +P
Sbjct: 96 ---EVIHARWAMLGALGCLTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLV 150
Query: 155 -----YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN 209
++ ++ LMG E R P LG DP YPGG F+
Sbjct: 151 HAQSILAIWACQVILMGAVEGYRVA--GGP--------------LGEVTDPIYPGGS-FD 193
Query: 210 PLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 194 PLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 251
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 102
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 103 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 160
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 161 VQVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDT 203
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 204 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 146/284 (51%), Gaps = 48/284 (16%)
Query: 1 MATQALVSSSLT--SSVETARQILGARSAQSPTGSSRKGSFVVR--AASTPP-VKQGADR 55
MAT A+ S+ T + + + + R G+ + F +R S P + G DR
Sbjct: 1 MATSAIQQSAFTGKTGLRQGNEFIRKR------GNFGQARFTMRRTVKSAPESIWYGPDR 54
Query: 56 PLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
P + S+Q SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLG
Sbjct: 55 PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLG 108
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMA 163
A+G PE+L K G+ E WF+ G I G +Y +P ++ ++
Sbjct: 109 ALGCTFPELLEKNGVKFGEAV--WFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVV 166
Query: 164 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
LMGF E R P LG DP YPGG F+PLGL D S +
Sbjct: 167 LMGFVEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPDSFAEL 209
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DH+ADPV NN
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 123/219 (56%), Gaps = 23/219 (10%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W ++ +YL+ LPG YGFDPL L DP KW E+++ R+AM G
Sbjct: 38 WLPGSKTPAYLE-DLPGSYGFDPLKLGEDPASL------KWYVQSELVHSRFAMAAVAGI 90
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY---TLFVLEMALMGFAEHRRF 173
+ PE+L G + W++ AG Y + P TL LE+ F E +R+
Sbjct: 91 LIPEVLKAFGAV---NLPVWYE------AGKYAQESSPIPFNTLIALEIFAFNFVEIKRW 141
Query: 174 QDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 232
QD+ PGS G + F+G E + G+G+ YPGG +F+PLGL K + KL+E+KNGR
Sbjct: 142 QDFKKPGSQGEEGSFVGLEGFFKGTGENGYPGG-VFDPLGLSKG-PGYEAMKLREIKNGR 199
Query: 233 LAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
LAMLA +G+ Q L TG GP +NLLDHL++P+ NN T+
Sbjct: 200 LAMLAFIGFASQYLATGKGPIENLLDHLSNPLANNFTTN 238
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/270 (37%), Positives = 142/270 (52%), Gaps = 39/270 (14%)
Query: 11 LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW---FASKQSLSY 67
+ S V +R G + QS T S++ V RA+ G DR + F+ SY
Sbjct: 1 MASVVAASRAFTGITARQS-TKSAKARKQVTRASVE---FYGPDRAKFLGPFSEGAVPSY 56
Query: 68 LDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAG 126
L G PGDYG+D GLS DPE + E E+I+ R+A+LGA+G + PE L ++G
Sbjct: 57 LKGEFPGDYGWDTAGLSADPETFARYREI------ELIHSRWALLGALGILTPEYLQRSG 110
Query: 127 LIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWA 177
+ A WF+ G I NY +P + + ++ L+G AE R+
Sbjct: 111 AVDFGEAAVWFKAGASIFGDDGLNYLGNPQLIHAQSIVATLLAQIVLVGTAEAYRYAG-- 168
Query: 178 NPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLA 237
E + SGD YPGG F+PLGLG D +++ + K+KE+KNGRLA ++
Sbjct: 169 -------------EGPVDTSGDKLYPGG-FFDPLGLGDDPEALAELKVKEIKNGRLAQVS 214
Query: 238 ILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ G+FVQ LVTG GP +NL DHLADP NNN
Sbjct: 215 VFGFFVQALVTGKGPLENLDDHLADPWNNN 244
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 143/279 (51%), Gaps = 44/279 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
M + L SL V + +G+ A+ + K +++ + GADRP +
Sbjct: 7 MHSTTLAGQSLLKPVNELSRKVGSSEARVTMRRTVK-------STSDSIWYGADRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S ++ SYL G GDYG+D GLS DPE F + L EVI+ R+AMLGA+G +
Sbjct: 60 PFSGETPSYLTGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALGCL 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L K+G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 114 TPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D + + K+KE+
Sbjct: 172 EGYRVA--GGP--------------LGEITDPIYPGGS-FDPLGLADDPDTFAELKVKEI 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 253
>gi|87313213|gb|ABD37903.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Chlamydomonas incerta]
Length = 233
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 140/259 (54%), Gaps = 34/259 (13%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFAS 61
++ A+ +S++ +V+ AR+ + A ++S G ++ R A+ P GAD P
Sbjct: 8 SSVAVKASAVPENVKEAREWIDAWKSKS--GGAK------RDAALPSWMPGADLP----- 54
Query: 62 KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
YL+G+LPGD+GFDPL L DP ++ KW A E++N R+AML G + PE
Sbjct: 55 ----GYLNGTLPGDFGFDPLYLGQDP------VKLKWYAQAELMNARFAMLAVAGILVPE 104
Query: 121 ILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPG 180
+L G +AW+ AG + Y+A +LF ++M L + E RR+QD+ PG
Sbjct: 105 LLSNIGFSWPGAGVAWYD------AGKFEYFAPASSLFGVQMLLFAWVEIRRYQDFVKPG 158
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
S + K G+ +P YPGG +F+P G K + +K KLKE+KNGRLAMLA G
Sbjct: 159 SANQDPIFTNNKLPDGN-EPGYPGG-IFDPFGWSKGD--IKSLKLKEIKNGRLAMLAFAG 214
Query: 241 YFVQGLVTGVGPYQNLLDH 259
+ Q TG P +NL H
Sbjct: 215 FIGQAYTTGTTPLKNLSTH 233
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/279 (39%), Positives = 141/279 (50%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ S+ T + R A S G SR ++ + G DRP +
Sbjct: 1 MATSAIQQSAFTGKTGLKQGNEFIRKAGS-FGQSRFTMRRTVKSAPESIWYGPDRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+Q SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G
Sbjct: 60 PFSEQIPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCT 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PEIL K G+ E WF+ G I G +Y +P ++ ++ LMGF
Sbjct: 114 FPEILEKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D + + K+KE+
Sbjct: 172 EGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPDAFAELKVKEL 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VT GP QNL DH+ADPV NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTDKGPVQNLYDHVADPVANN 253
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 145/278 (52%), Gaps = 40/278 (14%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
AT AL S S A ++ + S S G V ++A + G DR +
Sbjct: 4 ATMALSSPSFAGQ---AVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVF 114
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 115 PELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 172
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R G +G DP YPGG F+PLGL +D ++ + K+KE+K
Sbjct: 173 GYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAFAELKVKEIK 215
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 134/245 (54%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + S+ GADR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 35 RKTAAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET--- 91
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 92 FSKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDY 146
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R G +G DP Y
Sbjct: 147 LGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEIV------------DPLY 190
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+AD
Sbjct: 191 PGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIAD 249
Query: 263 PVNNN 267
PVNNN
Sbjct: 250 PVNNN 254
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 150/284 (52%), Gaps = 48/284 (16%)
Query: 1 MATQALVSSSLT--SSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQGADR 55
M T A+ SS ++++ + ++L G S G +R STP + G DR
Sbjct: 1 MGTSAIQQSSFAGQTALKPSNELL------RKVGVSGGGRVTMRRTVKSTPQSIWYGPDR 54
Query: 56 PLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
P + S+ + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLG
Sbjct: 55 PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLG 108
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMA 163
A+G PEIL K G+ E WF+ G I G +Y +P ++ +++
Sbjct: 109 ALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVV 166
Query: 164 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
LMGF E R P LG DP YPGG F+PL L +D ++ +
Sbjct: 167 LMGFIEGYRIG--GGP--------------LGEGLDPLYPGGA-FDPLNLAEDPEAFSEL 209
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/278 (37%), Positives = 141/278 (50%), Gaps = 52/278 (18%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
A + L SS+L + A++ P+GS GADR L+
Sbjct: 17 AVKNLPSSALFGEARVTMRKTAAKAKPVPSGSPW---------------YGADRVLYLGP 61
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S Q SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 62 LSGQPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVF 115
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 116 PELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 173
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R G +G DP YPGG F+PLGL D ++ + K+KEVK
Sbjct: 174 GYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKVKEVK 216
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DH+ DPVNNN
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENLADHITDPVNNN 254
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 145/278 (52%), Gaps = 40/278 (14%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
AT AL S S A ++ + S S G V ++A + G DR +
Sbjct: 4 ATMALSSPSFAGQ---AVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVF 114
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 115 PELLARNGVKFGEAV--WFKAGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 172
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R G +G DP YPGG F+PLGL +D ++ + K+KE+K
Sbjct: 173 GYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAFAELKVKEIK 215
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 123/217 (56%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 63 SGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 116
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 117 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 174
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R + LG DP YPGG F+PLGL +D ++ + K+KE+KN
Sbjct: 175 YRVAG----------------EPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKN 217
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ LVTG GP +NL DHLADPVNNN
Sbjct: 218 GRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNN 254
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 145/277 (52%), Gaps = 41/277 (14%)
Query: 7 VSSSLTSSVETARQILGARSAQ--SPTGSSRKGSFVVRAASTPP--VKQGADRPLWFA-- 60
+S++ SS + +L + G+S+ + R + P + G DRP +
Sbjct: 3 TASAIQSSSLAGQTLLRPHQNELVKKVGASQARITMRRTVRSAPESIWYGPDRPKYLGPF 62
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 63 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 116
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L K G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 117 ELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEG 174
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 175 YRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKN 217
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 137/261 (52%), Gaps = 48/261 (18%)
Query: 29 SPTGSSR--KGSFVVRAASTPPVKQGADRPLWFA----------SKQSLSYLDGSLPGDY 76
SPT S +G +R A+ D P W+ S +S SYL G PGDY
Sbjct: 21 SPTASETLGEGRITMRKAAGKSKVATIDSP-WYGPDRVKYLGPFSGESPSYLTGEFPGDY 79
Query: 77 GFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALA 135
G+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+ E
Sbjct: 80 GWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV-- 131
Query: 136 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQY 186
WF+ G I G +Y +P ++ ++ LMG E R P
Sbjct: 132 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA--GGP------- 182
Query: 187 FLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 246
LG DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +
Sbjct: 183 -------LGEVTDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAI 234
Query: 247 VTGVGPYQNLLDHLADPVNNN 267
VTG GP +NL DHLADPVNNN
Sbjct: 235 VTGKGPLENLADHLADPVNNN 255
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 146/279 (52%), Gaps = 40/279 (14%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT + SS T + + + + A+ + RK + S+ G+DR L+
Sbjct: 1 MATATMALSSSTFAGKAVKNLPALGEARI---TMRKTVAKAKPVSSGSPWYGSDRVLYLG 57
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 58 PLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCV 111
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 112 FPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV 169
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R G +G DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 170 EGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAFAELKVKEI 212
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 213 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 145/277 (52%), Gaps = 41/277 (14%)
Query: 7 VSSSLTSSVETARQILGARSAQ--SPTGSSRKGSFVVRAASTPP--VKQGADRPLWFA-- 60
+S++ SS + +L + G+S+ + R + P + G DRP +
Sbjct: 3 TASAIQSSSLAGQTLLRPHQNELVKKVGASQARITMRRTVRSAPESIWYGPDRPKYLGPF 62
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 63 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 116
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L K G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 117 ELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVGLMGLIEG 174
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 175 YRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKN 217
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 145/277 (52%), Gaps = 41/277 (14%)
Query: 7 VSSSLTSSVETARQILGARSAQ--SPTGSSRKGSFVVRAASTPP--VKQGADRPLWFA-- 60
+S++ SS + +L + G+S+ + R + P + G DRP +
Sbjct: 3 TASAIQSSSLAGQTLLRPHQNELVKKVGASQARITMRRTVRSAPESIWYGPDRPKYLGPF 62
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 63 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 116
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L K G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 117 ELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEG 174
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 175 YRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKN 217
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|75101782|sp|Q36718.1|CB120_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic;
AltName: Full=LHCI type I CAB-1B-20; AltName:
Full=Light-harvesting complex I 20 kDa protein; Flags:
Precursor
gi|544702|gb|AAB29486.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 231
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 119/216 (55%), Gaps = 24/216 (11%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W QS +YLDGSL GD GFDPL L+ DPE +W +V+NGR+AMLG G
Sbjct: 36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDL------RWFVQADVVNGRWAMLGVAGM 89
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE+L KAGL+ A W + G Y+A T + M+ + E RR+QD
Sbjct: 90 LIPEVLTKAGLM---NAPEWLRL-----PGKETYFASSSTALRVHMS-STYVEIRRWQDI 140
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
NPGS+ + F+ Y + YPG +FNPL E K KE+ NGRLAML
Sbjct: 141 KNPGSVNQDPI--FKSYSLPPHECGYPGR-VFNPLNFAPLEN-----KEKELANGRLAML 192
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
A LG+ VQ V G GP++NL HLADP +N ++ ++
Sbjct: 193 AFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTI 228
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/281 (38%), Positives = 149/281 (53%), Gaps = 45/281 (16%)
Query: 2 ATQALVSSSLTSSV-ETARQILG-ARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
AT AL S + + T+ + G AR T + K AAS+ GADR L+
Sbjct: 4 ATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPK-----PAASSGSPWYGADRVLYL 58
Query: 60 ---ASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
+ ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G
Sbjct: 59 GPLSGREPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALG 112
Query: 116 AIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMG 166
+ PE+L + G+ E WF+ G I G +Y +P ++ +++ LMG
Sbjct: 113 CVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMG 170
Query: 167 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
E R G +G DP YPGG F+PLGL D ++ + K+K
Sbjct: 171 AVEGYRIAG----GPLGEVV------------DPLYPGG-AFDPLGLADDPEACAELKVK 213
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 214 KIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 135/258 (52%), Gaps = 41/258 (15%)
Query: 25 RSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW---FASKQSLSYLDGSLPGDYGFDPL 81
RS+ PT S R V RAA G DRP + F+ + +YL G PGDYG+D
Sbjct: 10 RSSVRPTVSGRSARVVPRAAIE---WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTA 66
Query: 82 GLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG 140
GLS DPE + E E+I+ R+AMLGA+G I PE+L K G IP A+ WF+ G
Sbjct: 67 GLSADPETFKRYREL------ELIHARWAMLGALGCITPELLAKNG-IPFGEAV-WFKAG 118
Query: 141 V-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 191
I G NY + + ++ +MG AE R AN G +G
Sbjct: 119 AQIFAEGGLNYLGNENLIHAQSIIATLAFQVVVMGLAEAYR----ANGGPLGEGL----- 169
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
DP +PGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG G
Sbjct: 170 -------DPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 221
Query: 252 PYQNLLDHLADPVNNNVL 269
P QNL DHLA+P N
Sbjct: 222 PIQNLDDHLANPTAVNAF 239
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 106/279 (37%), Positives = 140/279 (50%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ S+ Q R S G SR ++ + G DRP +
Sbjct: 1 MATSAIQQSAFVGQAVGKSQNEFVRKVGS-CGESRITMRRTVKSAPQSIWYGEDRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+Q+ SY G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G +
Sbjct: 60 PFSEQTPSYSTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PEIL K G+ E WF+ G I G +Y +P ++ ++ LMGF
Sbjct: 114 FPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG D YPGG F+PLGL D ++ + K+KE+
Sbjct: 172 EGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEI 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DH+ DPV NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 125/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + L VI+ R+
Sbjct: 49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNRELG---VIHSRW 102
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 103 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 160
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 161 SQVVLMGFVEGYRIG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDT 203
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 204 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 127/231 (54%), Gaps = 37/231 (16%)
Query: 49 VKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVIN 105
+ G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+
Sbjct: 2 CRYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIH 55
Query: 106 GRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YT 156
R+AMLGA+G + PEIL K G+ E WF+ G I G +Y +P
Sbjct: 56 SRWAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILA 113
Query: 157 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKD 216
++ +++ LMGF E R P LG D YPGG F+PLGL D
Sbjct: 114 IWAVQVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADD 156
Query: 217 EKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 157 PDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 207
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 145/278 (52%), Gaps = 40/278 (14%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
AT AL S S A ++ + S S G V ++A + G DR +
Sbjct: 4 ATMALSSPSFAGQ---AVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVF 114
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 115 PELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 172
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R G +G DP YPGG F+PLGL +D ++ + K+KE+K
Sbjct: 173 GYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAFAELKVKEIK 215
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 144/288 (50%), Gaps = 57/288 (19%)
Query: 1 MATQALVSSSLTSSVETARQ--------ILGARSAQSPTGSSRKGSFVVRAASTP-PVKQ 51
MAT AL S+L +Q + G R + T STP +
Sbjct: 1 MATSALQQSALAGRTALKQQNELVKKVGVFGGRISMHRT-----------VKSTPQSIWY 49
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 50 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRW 103
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 104 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 161
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMGF E R P LG D YPGG F+PLGL D ++
Sbjct: 162 CQVVLMGFIEGYRVG--GGP--------------LGEGLDSIYPGGA-FDPLGLADDPEA 204
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLAD NN
Sbjct: 205 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADLAANN 252
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 140/269 (52%), Gaps = 44/269 (16%)
Query: 18 ARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQ-------GADRPLWFA--SKQSLSYL 68
+R ++G + S +G +R + P GADR L+ S + SYL
Sbjct: 11 SRALVGKPATTSTRDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGPFSGEPPSYL 70
Query: 69 DGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGL 127
G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+
Sbjct: 71 TGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGV 124
Query: 128 IPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWAN 178
E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 125 KFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVA--GG 180
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++
Sbjct: 181 P--------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 226 FGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 133/240 (55%), Gaps = 37/240 (15%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
V ++A + G DR + S +S SYL G PGDYG+D GLS DPE F + +
Sbjct: 39 VAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNR 95
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L + G+ E + WF+ G I G +Y +P
Sbjct: 96 EL---EVIHCRWAMLGALGCVFPELLARNGVKFGE--VVWFKAGSQIFSEGGLDYLGNPS 150
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS- 193
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 194 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 125/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 48 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 101
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 102 AMLGALGCVFPEILAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 159
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 160 CQVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDT 202
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 203 AAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 250
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 147/287 (51%), Gaps = 49/287 (17%)
Query: 1 MATQALVSSSLTSSVETARQILG--------ARSAQSPTGSSRKGSFVVRAASTPPVKQG 52
+ + A ++S Q+LG AR + +++K V A+++P G
Sbjct: 6 IGSCAFAGGQISSLKPHNNQLLGVGAGVHGEARVTMRKSSTTKK----VSASASPSPWYG 61
Query: 53 ADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
DR L+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+A
Sbjct: 62 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWA 115
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 116 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAC 173
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 174 QVILMGAVEGYRIA--GGP--------------LGEITDPIYPGGS-FDPLGLADDPDAF 216
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 217 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNN 263
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 133/245 (54%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + S+ GADR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 35 RKTAAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET--- 91
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 92 FSKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDY 146
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R P LG DP Y
Sbjct: 147 LGNPSLVHAQSILAIWACQVVLMGAVEGYRVA--GGP--------------LGEIVDPLY 190
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KEVKNGRLAM ++ G+FVQ +VTG GP +NL DH+AD
Sbjct: 191 PGGS-FDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIAD 249
Query: 263 PVNNN 267
P+NNN
Sbjct: 250 PINNN 254
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 52 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 105
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 106 AMLGALGCVFPELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 163
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 SQVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEA 206
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 207 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 134/247 (54%), Gaps = 37/247 (14%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGT 89
+ RK + + S+ GADR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 33 TMRKTTAKAKQVSSSSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET- 91
Query: 90 GGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTY 148
F + + L EVI+ R+AMLGA+G+I PE+L + G+ E WF+ G I G
Sbjct: 92 --FAKNREL---EVIHCRWAMLGALGSIFPELLARNGVKFGEAV--WFKAGSQIFSEGGL 144
Query: 149 NYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
+Y +P ++ ++ LMG E R P LG DP
Sbjct: 145 DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA--GGP--------------LGEIVDP 188
Query: 201 AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+
Sbjct: 189 LYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHI 247
Query: 261 ADPVNNN 267
DPVNNN
Sbjct: 248 VDPVNNN 254
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 107/281 (38%), Positives = 146/281 (51%), Gaps = 45/281 (16%)
Query: 2 ATQALVSSSLTS---SVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW 58
AT A+ SSS +V ++ QI G A + RK + S+ G DR +
Sbjct: 4 ATMAISSSSFAGKAVNVPSSSQITGNGKA-----TMRKTVTKAKPVSSGSPWYGPDRVKY 58
Query: 59 FA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G
Sbjct: 59 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALG 112
Query: 116 AIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMG 166
+ PE+ + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 113 CVFPELFARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 170
Query: 167 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
E R G +G DP YPGG F+PLGL D ++ + K+K
Sbjct: 171 AVEGYRVAG----GPLGEVI------------DPLYPGGS-FDPLGLADDPEAFAELKVK 213
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
E+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 108/281 (38%), Positives = 148/281 (52%), Gaps = 47/281 (16%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSR------KGSFVVRAASTPPVKQGADRPLW 58
A + +L+S + +R+A P G R G V A+S+P G+DR L+
Sbjct: 3 AAATMALSSPAMAGTPVKASRAA--PFGEGRITMRKTAGKPKVAASSSP--WYGSDRVLY 58
Query: 59 FA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G
Sbjct: 59 LGPLSGDPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALG 112
Query: 116 AIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMG 166
+ PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 113 CVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 170
Query: 167 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
E R G +G DP YPGG F+PLGL +D ++ + K+K
Sbjct: 171 AVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLAEDPEAFAELKVK 213
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
E+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 144/278 (51%), Gaps = 40/278 (14%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
AT AL S S A ++ + S S G V ++A + G DR +
Sbjct: 4 ATMALSSPSFAGQ---AVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVF 114
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 115 PELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 172
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R G +G DP YPGG F+PLGL D ++ + K+KE+K
Sbjct: 173 GYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKVKEIK 215
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 107/283 (37%), Positives = 149/283 (52%), Gaps = 44/283 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSR----KGSFVVRAASTPPVKQGADRP 56
MAT + +L+SS + + + S+ TG+ R K + + AS+ G DR
Sbjct: 1 MATSTM---ALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRV 57
Query: 57 LWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGA 113
+ S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA
Sbjct: 58 KYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGA 111
Query: 114 VGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMAL 164
+G + PE+L + G+ E WF+ G I G +Y +P ++ ++ L
Sbjct: 112 LGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVL 169
Query: 165 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 224
MG E R G +G DP YPGG F+PLG D ++ + K
Sbjct: 170 MGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGPADDPEAFAELK 212
Query: 225 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 133/245 (54%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + S+ G DR + S +S SYL G PGDYG+D GLS DPE
Sbjct: 36 RKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET--- 92
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 93 FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDY 147
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R G +G DP Y
Sbjct: 148 LGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVV------------DPLY 191
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLAD
Sbjct: 192 PGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 250
Query: 263 PVNNN 267
PVNNN
Sbjct: 251 PVNNN 255
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 105/278 (37%), Positives = 141/278 (50%), Gaps = 52/278 (18%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
A + L SSSL + A+ Q +GS GS DR L+
Sbjct: 17 AVKNLPSSSLFGEARVTMRKTAAKVKQVASGSPWYGS---------------DRVLYLGP 61
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 62 LSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVF 115
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 116 PELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 173
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R G +G DP YPGG F+PLGL D ++ + K+KE+K
Sbjct: 174 GYRIAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAFAELKVKEIK 216
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 127/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR L+ S SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 46 GSDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRW 99
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 100 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 157
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R P LG DP YPGG F+PLGL +D ++
Sbjct: 158 CQVVLMGAVEGYRVA--GGP--------------LGEIVDPLYPGGS-FDPLGLAEDPEA 200
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 201 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 248
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + L EVI+GR+AMLGA+G I P
Sbjct: 61 SAQTPSYLRGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 114
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 115 EVLEKWVRVDFKEPV-WFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 173
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 174 YRIN--GLPGV--------------GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 217
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHLADPV NN
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPVANN 254
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 107/286 (37%), Positives = 141/286 (49%), Gaps = 43/286 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
M + L +L + V + + AR P+ S S G DRPL+
Sbjct: 3 MLMKQLAKPTLKTGVSRRQVQVNARRTVKPSKGSTPDS----------AWYGPDRPLFLG 52
Query: 61 S--KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S + SYL G PGDYG+D G S T F + + EVI+ R+A+LGA+G +
Sbjct: 53 SLSGEPPSYLTGEFPGDYGWDTAGFSADPTT--FARYRTI---EVIHARWALLGALGIVT 107
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAE 169
PEIL + G+ A WF+ G I G NY +P + +++ +MG AE
Sbjct: 108 PEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLGNPNLIHAQSILATLAVQVIVMGAAE 167
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R A PG G D YPGGP F+PLGL D + + K+KE+K
Sbjct: 168 GFRANGEA-PGVEGL--------------DTLYPGGP-FDPLGLADDPDTFAELKVKEIK 211
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 274
NGRLAM A G+FVQ +VTG GP QNL DHLADP VNN ++ KF
Sbjct: 212 NGRLAMFACFGFFVQAIVTGKGPIQNLEDHLADPGVNNAFASATKF 257
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 132/245 (53%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFAS--KQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + S+ G+DR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 30 RKTAAKAKQVSSSSPWYGSDRVLYLGSLSGEPPSYLTGEFPGDYGWDTAGLSADPET--- 86
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF G I G +Y
Sbjct: 87 FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFMAGSQIFSEGGLDY 141
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R P LG DP Y
Sbjct: 142 LGNPSLVHAQSILAIWACQVVLMGAVEGYRIA--GGP--------------LGEIVDPLY 185
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+AD
Sbjct: 186 PGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIAD 244
Query: 263 PVNNN 267
PVNNN
Sbjct: 245 PVNNN 249
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 133/245 (54%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + S+ GADR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 35 RKTAAKAKQVSSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET--- 91
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 92 FSKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDY 146
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R P LG DP Y
Sbjct: 147 LGNPSFVHAQSILAIWACQVVLMGAVEGYRVA--GGP--------------LGEIVDPLY 190
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KEVKNGRLAM ++ G+FVQ +VTG GP +NL DH+AD
Sbjct: 191 PGGS-FDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIAD 249
Query: 263 PVNNN 267
P+NNN
Sbjct: 250 PINNN 254
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 143/280 (51%), Gaps = 43/280 (15%)
Query: 6 LVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQ------GADRPLWF 59
+ + +L+S+ L A++ T S G +R + P G DR +
Sbjct: 1 MATMTLSSTFTGKAVPLSAQTELPATVRSSNGRVTMRKTAGKPAASSGSPWYGPDRVKYL 60
Query: 60 A--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G
Sbjct: 61 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGC 114
Query: 117 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGF 167
+ PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 115 VFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGA 172
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R P LG DP YPGG F+PLGL D ++ + K+KE
Sbjct: 173 VEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKE 215
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + L EVI+GR+AMLGA+G I P
Sbjct: 61 SAQTPSYLRGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 114
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 115 EVLEKWVRVDFKEPV-WFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 173
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 174 YRIN--GLPGV--------------GDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 217
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHLADPV NN
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLADPVANN 254
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 142/287 (49%), Gaps = 54/287 (18%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA +SS T +T LG R + +P V A TP G D LW+
Sbjct: 1 MALMPATASSATVVKQTP--FLGQRKSANPLRD-------VVAMGTPKFTMGND--LWYG 49
Query: 61 ----------SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
S Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+A
Sbjct: 50 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWA 103
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 160
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 104 MLGALGCITPEVLQKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 162
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R + G G+ YPGG F+PLGL D +
Sbjct: 163 QIVLMGLVEGFRINGLPDVGE----------------GNDLYPGGQYFDPLGLADDPVTF 206
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 104/268 (38%), Positives = 144/268 (53%), Gaps = 43/268 (16%)
Query: 12 TSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLD 69
TS+ +++++ GAR RK + + AS+ G DR + S +S SYL
Sbjct: 20 TSANPSSQELGGARFTM------RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLT 73
Query: 70 GSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLI 128
G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+
Sbjct: 74 GEFPGDYGWDTAGLSADPET---FSKNREL---EVIHSRWAMLGALGCVFPELLSRNGVK 127
Query: 129 PQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANP 179
E WF+ G I G +Y +P ++ ++ LMG E R P
Sbjct: 128 FGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA--GGP 183
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++
Sbjct: 184 --------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 228
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNN 267
G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 229 GFFVQAIVTGKGPLENLADHLSDPVNNN 256
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 105/269 (39%), Positives = 144/269 (53%), Gaps = 44/269 (16%)
Query: 11 LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYL 68
L S E +R++ GA A+ + +K A+++ + GADRPL+ S SYL
Sbjct: 18 LKSVNELSRKV-GAGEARVQMMAPKK------ASTSGSIWYGADRPLYLGPFSGSPPSYL 70
Query: 69 DGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGL 127
G PGDYG+D GLS DPE F + + L E+I+ R+AMLGA+G + PE+L K G+
Sbjct: 71 TGEFPGDYGWDTAGLSADPET---FAKNREL---ELIHARWAMLGALGCVTPELLAKNGV 124
Query: 128 IPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWAN 178
E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 125 KFGEAV--WFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWAFQVVLMGAVEGYRVA--GG 180
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++
Sbjct: 181 P--------------LGEVEDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSM 225
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 226 FGFFVQAIVTGKGPIENLSDHLADPTVNN 254
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 148/278 (53%), Gaps = 40/278 (14%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSS---RKGSFVVRAASTPPVKQGADRPLWFA- 60
A S +L+S T + + S+Q G+ RK + + AS+ G DR +
Sbjct: 2 AASSMALSSPTLTGKPVKLNPSSQELGGARFTMRKSATTKKVASSGSPWYGPDRVKYLGP 61
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 62 FSGESPSYLTGEFPGDYGWDTAGLSADPET---FSKNREL---EVIHSRWAMLGALGCVF 115
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 116 PELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVE 173
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R P LG DP YPGG F+PLGL +D ++ + K+KE+K
Sbjct: 174 GYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELK 216
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 147/286 (51%), Gaps = 52/286 (18%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGS--FVVRAASTPPVKQGA----- 53
MA A+ SS T + G SPT +G+ F +R ++ V G+
Sbjct: 1 MAASAMALSSPT--------LAGQAVKLSPTAPEIQGNAKFTMRKTASKSVSSGSPWYGP 52
Query: 54 DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAM 110
DR + S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AM
Sbjct: 53 DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAM 106
Query: 111 LGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLE 161
LGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 107 LGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 162 MALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMK 221
+ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 VVLMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFA 207
Query: 222 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 131/240 (54%), Gaps = 38/240 (15%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
V +AST P G DR L+ S + SYL G PGDYG+D GLS DPE F + +
Sbjct: 49 VSASASTSPW-YGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNR 104
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 105 EL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPS 159
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 160 LVHAQSILAIWACQVILMGAVEGYRIA--GGP--------------LGEITDPIYPGGS- 202
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 203 FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 125/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G GDYG+D GLS DPE F + L EVI+ R+
Sbjct: 49 GPDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPET---FARNREL---EVIHSRW 102
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 103 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 160
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 161 SQVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDT 203
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 204 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 133/245 (54%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + S+ GADR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 35 RKTAAKAKQLSSSNPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET--- 91
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 92 FSKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDY 146
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R P LG DP Y
Sbjct: 147 LGNPSLVHAQSILAIWACQVVLMGAVEGYRVA--GGP--------------LGEIVDPLY 190
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+AD
Sbjct: 191 PGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIAD 249
Query: 263 PVNNN 267
PVNNN
Sbjct: 250 PVNNN 254
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 125/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 102
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 103 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 160
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 161 SQVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDT 203
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KN RLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 204 FAELKVKELKNSRLAMFSMFGFFVQAIVTGKGPIENLADHVADPVNNN 251
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 143/282 (50%), Gaps = 43/282 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQGADRPL 57
MAT A+ SS R + G R V+R STP + G DRP
Sbjct: 1 MATSAIQHSSFAGQTALKPSNDLIRKVGASNGGGR---VVMRRTVKSTPQSIWYGPDRPK 57
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S+ + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+
Sbjct: 58 YLGPFSENTPSYLTGEYPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGAL 111
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G PEIL K G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 112 GCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLM 169
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
GF E R P LG DP YPGG F+PL L +D ++ + K+
Sbjct: 170 GFIEGYRIG--GGP--------------LGEGLDPLYPGG-AFDPLNLAEDPEAFSELKV 212
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM + G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 213 KELKNGRLAMFPMFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 107/280 (38%), Positives = 146/280 (52%), Gaps = 45/280 (16%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQ-----GADRPLWF 59
A + +L+S + + + SA TG+ R +R PV G DR +
Sbjct: 2 AAATMALSSPSFAGQAVKLSPSASEITGNGR---VSMRKTVAKPVASSSPWYGPDRVKYL 58
Query: 60 A--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G
Sbjct: 59 GPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGC 112
Query: 117 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGF 167
+ PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 113 VFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGA 170
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R P LG DP YPGG F+PLGL +D ++ + K+KE
Sbjct: 171 VEGYRVA--GGP--------------LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKE 213
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 214 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
GADRP + S ++ SYL+G GDYG+D GLS DPE F + L EVI+ R+
Sbjct: 53 GADRPKYLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARW 106
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L K+G+ E WF+ G I G +Y +P ++
Sbjct: 107 AMLGALGCVTPELLAKSGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWA 164
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 165 SQVILMGAVEGYRVA--GGP--------------LGDVTDPIYPGGS-FDPLGLADDPDT 207
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 208 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/287 (35%), Positives = 142/287 (49%), Gaps = 50/287 (17%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ + A ++S Q+LG + G + +R A+T V A W+
Sbjct: 6 IGSCAFAGGQISSLKPHTNQLLGVGA-----GVHGEARVTMRKAATKKVSVSASTSPWYG 60
Query: 61 SKQSL----------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
+ L SYL G PGDYG+D GLS DPE F + + L EVI+ R+A
Sbjct: 61 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWA 114
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 172
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 173 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 215
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV+NN
Sbjct: 216 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVSNN 262
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 123/217 (56%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 64 SGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 117
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 118 ELLARNGVKFGEAV--WFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 175
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R + LG DP YPGG F+PLGL +D ++ + K+KE+KN
Sbjct: 176 YRVAG----------------EPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKN 218
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 107/279 (38%), Positives = 145/279 (51%), Gaps = 38/279 (13%)
Query: 2 ATQALVSSSLT-SSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+T AL S SL +V+ A + + + RK +A S+ G DR +
Sbjct: 5 STMALSSPSLAGQAVKLAPNVTELLAGDQGRVTMRKSVAKSKAVSSGSPWYGPDRVKYLG 64
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 65 PFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCV 118
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 119 FPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVILMGAV 176
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 177 EGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEI 219
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 220 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 258
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 135/258 (52%), Gaps = 41/258 (15%)
Query: 25 RSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW---FASKQSLSYLDGSLPGDYGFDPL 81
RS+ PT S R V RAA G DRP + F+ + +YL G PGDYG+D
Sbjct: 7 RSSVRPTVSGRSARVVPRAAIE---WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTA 63
Query: 82 GLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG 140
GLS DPE + E E+I+ R+AMLGA+G I PE+L K G IP A+ WF+ G
Sbjct: 64 GLSADPETFKRYREL------ELIHARWAMLGALGCITPELLAKNG-IPFGEAV-WFKAG 115
Query: 141 V-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 191
I G NY + + ++ +MG AE R AN G +G
Sbjct: 116 SQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR----ANGGPLGEGL----- 166
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
DP +PGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG G
Sbjct: 167 -------DPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 218
Query: 252 PYQNLLDHLADPVNNNVL 269
P QNL DHLA+P N
Sbjct: 219 PIQNLDDHLANPTAVNAF 236
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 132/238 (55%), Gaps = 38/238 (15%)
Query: 43 AASTPPVKQGADRPLWF---ASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWL 98
AAS+ GADR L+ + ++ SYL G PGDYG+D GLS DPE F + + L
Sbjct: 39 AASSGSPWYGADRVLYLGPLSGREPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL 95
Query: 99 AYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--- 154
EVI+ R+AMLG +G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 96 ---EVIHSRWAMLGGLGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLI 150
Query: 155 -----YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN 209
++ +++ LMG E R G +G DP YPGG F+
Sbjct: 151 HAQSILAIWAVQVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGG-AFD 193
Query: 210 PLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 194 PLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 146/279 (52%), Gaps = 41/279 (14%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTG----SSRKGSFVVRAASTPPVKQGADRPLWFA 60
A + +L+SS + + + S+ TG + RK + AS+ G DR +
Sbjct: 2 AATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLG 61
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S ++ SYL G P DYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 62 PFSGEAPSYLTGEFPSDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCV 115
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+ + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 116 FPELFARNGIKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV 173
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R G +G DP YPGG F+PLGL +D ++ + K+KE+
Sbjct: 174 EGYRVAG----GPLGEVI------------DPLYPGGS-FDPLGLAEDPEAFAELKVKEI 216
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 103/260 (39%), Positives = 139/260 (53%), Gaps = 46/260 (17%)
Query: 29 SPTGSSRKGSFVVR----AASTPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYG 77
SP+ S G+ V A+ PV G+ DR + S +S SYL G PGDYG
Sbjct: 20 SPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYG 79
Query: 78 FDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAW 136
+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+ E W
Sbjct: 80 WDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--W 131
Query: 137 FQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYF 187
F+ G I G +Y +P ++ ++ LMG E R G +G
Sbjct: 132 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVV- 186
Query: 188 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +V
Sbjct: 187 -----------DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 234
Query: 248 TGVGPYQNLLDHLADPVNNN 267
TG GP +NL DHLADPVNNN
Sbjct: 235 TGKGPLENLADHLADPVNNN 254
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 23 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRW 76
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 77 AMLGALGCVFPEILSKNGVTFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWA 134
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMGF E R P LG D YPGG F+PLGL D ++
Sbjct: 135 SQVVLMGFVEGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPEA 177
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 178 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANN 225
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 142/287 (49%), Gaps = 54/287 (18%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA A +SS T +T LG R + +P V A T G D LW+
Sbjct: 1 MALMAATASSATVVKQTP--FLGQRKSANPLRD-------VVAMGTSKFTMGND--LWYG 49
Query: 61 ----------SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
S Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+A
Sbjct: 50 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWA 103
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 160
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 104 MLGALGCITPEVLQKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGF 162
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R + G G+ YPGG F+PLGL D +
Sbjct: 163 QIVLMGLVEGFRINGLPDVGE----------------GNDLYPGGQYFDPLGLADDPVTF 206
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 207 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 131/236 (55%), Gaps = 38/236 (16%)
Query: 45 STP-PVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAY 100
STP + G DRP + S+ + SYL G PGDYG+D GLS DPE F + + L
Sbjct: 43 STPQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPET---FAKNREL-- 97
Query: 101 GEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP----- 154
EVI+ R+AMLGA+G PEIL K G+ E WF+ G I G +Y +P
Sbjct: 98 -EVIHSRWAMLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHA 154
Query: 155 ---YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL 211
++ +++ LMGF E R P LG DP YPGG F+PL
Sbjct: 155 QSILAIWAVQVVLMGFIEGYRIG--GGP--------------LGEGLDPLYPGGA-FDPL 197
Query: 212 GLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
L +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 198 NLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 148/283 (52%), Gaps = 43/283 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGAR-SAQSP---TGSSRKGSFVVRAASTPPVKQGADRP 56
MA+ + +++ +SSV LG R S+ +P S G +++ + G DR
Sbjct: 1 MASTVMAATASSSSVLRPTPFLGQRGSSANPLKDVVSMGNGKYIMGNE----LWYGPDRV 56
Query: 57 LWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGA 113
+ S Q+ SYL+G PGDYG+D GLS DPE F + L EVI+GR+AMLGA
Sbjct: 57 KYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGA 110
Query: 114 VGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMAL 164
+G I PE+L K + + + WF+ G I G +Y +P + ++ L
Sbjct: 111 LGCITPEVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
Query: 165 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 224
MG E R PG G G+ YPGG F+PLGL D + + K
Sbjct: 170 MGLVEGFRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELK 213
Query: 225 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 214 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 256
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 52 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRW 105
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 106 AMLGALGCVFPELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 163
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R P LG DP YPGG F+PLGL D +S
Sbjct: 164 SQVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPES 206
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 207 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPTANN 254
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 104/274 (37%), Positives = 142/274 (51%), Gaps = 43/274 (15%)
Query: 12 TSSVETARQILGARSAQSPTGSSRKGSFVV------RAASTPPVKQGADRPLWFA--SKQ 63
TS++ + +G +PTG+ G+ V R S+ G DR + S +
Sbjct: 3 TSTMTLSSSFIGKAVQLAPTGNDLMGNGRVTMRKTGRQVSSGSPWYGPDRVKYLGPFSGE 62
Query: 64 SLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIL 122
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L
Sbjct: 63 PPSYLTGEFPGDYGWDAAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELL 116
Query: 123 GKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRF 173
+ G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 117 ARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRI 174
Query: 174 QDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRL 233
P LG DP YPGG F+PLGL D ++ + K+KE+KNGR
Sbjct: 175 A--GGP--------------LGKVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRS 217
Query: 234 AMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
AM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 218 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 106/277 (38%), Positives = 141/277 (50%), Gaps = 39/277 (14%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVR--AASTPPVKQGADRPLWFA-- 60
A + L+S Q+LG A + + + + AAS G DR ++
Sbjct: 15 AFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPF 74
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 75 SGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 128
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y P ++ ++ LMG E
Sbjct: 129 ELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG 186
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D + D K+KE+KN
Sbjct: 187 YRVA--GGP--------------LGEVTDPIYPGGN-FDPLGLADDPDAFADVKVKEIKN 229
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 230 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 147/278 (52%), Gaps = 40/278 (14%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSS---RKGSFVVRAASTPPVKQGADRPLWFA- 60
A S +L+S T + + S+Q G+ RK + + AS+ G DR +
Sbjct: 2 AASSMALSSPTLTGKPVKLNPSSQELGGARFTMRKSATTKKVASSGSPWYGPDRVKYLGP 61
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 62 FSGESPSYLTGEFPGDYGWDTAGLSADPET---FSKNREL---EVIHSRWAMLGALGCVF 115
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 116 PELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVE 173
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R P LG DP YPGG F+PLGL D ++ + K+KE+K
Sbjct: 174 GYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELK 216
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 130/239 (54%), Gaps = 37/239 (15%)
Query: 41 VRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKW 97
V A+++P G DR L+ S + SYL G PGDYG+D GLS DPE F + +
Sbjct: 49 VSASASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNRE 105
Query: 98 LAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP-- 154
L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 106 L---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSL 160
Query: 155 ------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLF 208
++ ++ LMG E R P LG DP YPGG F
Sbjct: 161 IHAQSILAIWACQVILMGAVEGYRIA--GGP--------------LGEITDPIYPGGS-F 203
Query: 209 NPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 204 DPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNN 262
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 131/240 (54%), Gaps = 37/240 (15%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
V ++A + G DR + S +S SYL G PGDYG+D GLS DPE F + +
Sbjct: 39 VAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNR 95
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 96 EL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPS 150
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R G +G DP YPGG
Sbjct: 151 LVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVI------------DPLYPGGS- 193
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 119/217 (54%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + L EVI+GR+AMLGA G I P
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGAFGCITP 117
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 118 EVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 176
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGGP F+PLGL D + + K+KE+KN
Sbjct: 177 YRIN--GLPGV--------------GEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKN 220
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 221 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 257
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 133/245 (54%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RKG+ + AS+ G DR + S + SYL G PGDYG+D GLS DPE
Sbjct: 35 RKGATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET--- 91
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 92 FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDY 146
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R G +G DP Y
Sbjct: 147 LGNPSLVHAQSILAIWATQVILMGAVEGYRIAG----GPLGEVV------------DPLY 190
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLAD
Sbjct: 191 PGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 249
Query: 263 PVNNN 267
PVNNN
Sbjct: 250 PVNNN 254
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 143/282 (50%), Gaps = 44/282 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQGADRPL 57
MAT A+ S+ Q R G+ +G +R S P + G DRP
Sbjct: 1 MATCAIQQSAFVGQAVGKSQNEFIRK----VGNFGEGRITMRRTVKSAPQSIWYGEDRPK 56
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+
Sbjct: 57 YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGAL 110
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G + PEIL K G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 111 GCVFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLM 168
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
GF E R P LG D YPGG F+PLGL D ++ + K+
Sbjct: 169 GFVEGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPEAFAELKV 211
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ DPV NN
Sbjct: 212 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 132/245 (53%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + ++ GADR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 35 RKTTAKAKQVASSSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET--- 91
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 92 FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDY 146
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R P LG DP Y
Sbjct: 147 LGNPSLVHAQSILAIWACQVVLMGAVEGYRIA--GGP--------------LGEIVDPLY 190
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ D
Sbjct: 191 PGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITD 249
Query: 263 PVNNN 267
PVNNN
Sbjct: 250 PVNNN 254
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 119/217 (54%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + L EVI+GR+AMLGA G I P
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGAFGCITP 117
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 118 EVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 176
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGGP F+PLGL D + + K+KE+KN
Sbjct: 177 YRIN--GLPGV--------------GEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKN 220
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 221 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 257
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 140 bits (352), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 133/245 (54%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + AS+ G DR + S +S SYL G PGDYG+D GLS DPE
Sbjct: 2 RKTAAKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET--- 58
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 59 FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDY 113
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R P LG DP Y
Sbjct: 114 LGNPSLVHAQSILAIWACQVVLMGAVEGYRIA--GGP--------------LGEVVDPLY 157
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLAD
Sbjct: 158 PGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 216
Query: 263 PVNNN 267
PVNNN
Sbjct: 217 PVNNN 221
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 145/287 (50%), Gaps = 51/287 (17%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA+ + ++S + +T LG A + R V AA++ + G D LW+
Sbjct: 1 MASTIMAATSRVVAAKT--PFLGQGRAAANASPLRD----VAAAASGRITMGND--LWYG 52
Query: 61 ----------SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
S Q+ SYL G PGDYG+D GLS DPE F + L EVI+GR+A
Sbjct: 53 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWA 106
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 160
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 107 MLGALGCITPEVLEKWVRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 165
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 166 QVILMGLVEGFRIN--------------GLDGV--GEGNNLYPGGQYFDPLGLADDPVTF 209
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL DPV NN
Sbjct: 210 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 256
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 125/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 102
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 103 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 160
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+++ LMGF E R P LG D YP G F+PLGL D +
Sbjct: 161 VQVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPSGA-FDPLGLADDPDT 203
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 204 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 251
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 142/284 (50%), Gaps = 51/284 (17%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQ------GADR 55
AT AL S S + A S +G +G +R A P G DR
Sbjct: 3 ATMALSSPSFAGKA--------VKLAPSASGVLGQGRVTMRKAGGKPAASSGSPWYGPDR 54
Query: 56 PLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLG
Sbjct: 55 VKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLG 108
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMA 163
A+G + PE+L + G+ E WF+ G I G +Y +P ++ ++
Sbjct: 109 ALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVI 166
Query: 164 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
LMG E R P LG DP YPGG F+PLGL D ++ +
Sbjct: 167 LMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFAEL 209
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 110/285 (38%), Positives = 149/285 (52%), Gaps = 49/285 (17%)
Query: 1 MATQALVSSSLT--SSVETARQILGARSAQSPTGSSRKGSFVV--RAASTPP--VKQGAD 54
MAT A+ SS ++++ + +L G+S G VV R + P + G D
Sbjct: 1 MATSAIQHSSFAGQTALKPSNDLL------RKVGASNGGGRVVMRRTVKSTPQSIWYGPD 54
Query: 55 RPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAML 111
RP + S+ + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AML
Sbjct: 55 RPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAML 108
Query: 112 GAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEM 162
GA+G PEIL K G+ E WF+ G I G +Y +P ++ ++
Sbjct: 109 GALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQV 166
Query: 163 ALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKD 222
LMG E R P LG DP YPGG F+PL L +D ++ +
Sbjct: 167 VLMGLIEGYRIG--GGP--------------LGEGLDPLYPGGA-FDPLNLAEDPEAFSE 209
Query: 223 FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 254
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 141/287 (49%), Gaps = 50/287 (17%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ + A ++S Q+LG + G + +R A+T V A W+
Sbjct: 6 IGSCAFAGGQISSLKPHTNQLLGVGA-----GVHGEARVTMRKATTKKVSASASTSPWYG 60
Query: 61 SKQSL----------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
+ L SYL G PGDYG+D GLS DPE F + + L EVI+ R+A
Sbjct: 61 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWA 114
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 172
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 173 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 215
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRL M ++ G+FVQ +VTG GP ++L DHLADPVNNN
Sbjct: 216 AELKVKEIKNGRLTMFSMFGFFVQAIVTGKGPIEDLADHLADPVNNN 262
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 133/248 (53%), Gaps = 42/248 (16%)
Query: 37 GSFVVRAASTPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEG 88
G +R A++ V G+ DR + S ++ SYL G PGDYG+D GLS DPE
Sbjct: 30 GRISMRKAASKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET 89
Query: 89 TGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGT 147
F + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G
Sbjct: 90 ---FARNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGG 141
Query: 148 YNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGD 199
+Y +P ++ ++ LMG E R P LG D
Sbjct: 142 LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA--GGP--------------LGEVTD 185
Query: 200 PAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDH 259
P YPGG F+PLGL D ++ + K+KE+KNGRLAM +I G+FVQ +VTG GP +NL DH
Sbjct: 186 PIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSIFGFFVQAIVTGKGPLENLADH 244
Query: 260 LADPVNNN 267
LADPVNNN
Sbjct: 245 LADPVNNN 252
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 106/277 (38%), Positives = 141/277 (50%), Gaps = 39/277 (14%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVR--AASTPPVKQGADRPLWFA-- 60
A + L+S Q+LG A + + + + AAS G DR L+
Sbjct: 15 AFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPF 74
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 75 SGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 128
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y P ++ ++ LMG E
Sbjct: 129 ELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG 186
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D + + K+KE+KN
Sbjct: 187 YRVA--GGP--------------LGEVTDPIYPGGN-FDPLGLADDPDAFAELKVKEIKN 229
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 230 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 106/280 (37%), Positives = 146/280 (52%), Gaps = 45/280 (16%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQ-----GADRPLWF 59
A + +L+S + + + SA TG+ R +R PV G DR +
Sbjct: 2 AAATMALSSPSFAGQAVKLSPSAPEITGNGR---VSMRKTVAKPVASSSPWYGPDRVKYL 58
Query: 60 A--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G
Sbjct: 59 GPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGC 112
Query: 117 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGF 167
+ PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 113 VFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGA 170
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R G +G DP YPGG F+PLGL +D ++ + K+KE
Sbjct: 171 VEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAFAELKVKE 213
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 214 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 131/240 (54%), Gaps = 37/240 (15%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
V ++A + G DR + S +S SYL G PGDYG+D GLS DPE F + +
Sbjct: 23 VAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNR 79
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 80 EL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPS 134
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 135 LVHAQSILAIWACQVVLMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS- 177
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 178 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 237
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 145/281 (51%), Gaps = 40/281 (14%)
Query: 1 MATQALVSSSLTSSV--ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW 58
MA+ + SS+ + + + +G + + S V A+S P G DR +
Sbjct: 4 MASAGVASSAFAGQIVLKPQNEFVGGVHGEGRITMRKTASKKVVASSGSPW-YGPDRVKY 62
Query: 59 FA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G
Sbjct: 63 LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALG 116
Query: 116 AIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMG 166
+ PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 117 CVFPELLSRNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMG 174
Query: 167 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
E R P LG DP YPGG F+PLGL D + + K+K
Sbjct: 175 AVEGYRIA--GGP--------------LGEITDPIYPGGS-FDPLGLADDPDAFAELKVK 217
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
E+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 218 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 258
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 143/283 (50%), Gaps = 47/283 (16%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-----DRP 56
AT AL S SL + + A SA G R A + P G+ DR
Sbjct: 3 ATMALSSPSLA-----GKAVKLAPSASDVLGEGRVTMRKSTAKAKPAAASGSPWYGPDRV 57
Query: 57 LWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGA 113
+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA
Sbjct: 58 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGA 111
Query: 114 VGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMAL 164
+G + PE+L + G+ E WF+ G I G +Y +P ++ ++ L
Sbjct: 112 LGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVIL 169
Query: 165 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 224
MG E R P LG DP YPGG F+PLGL D ++ + K
Sbjct: 170 MGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELK 212
Query: 225 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 133/245 (54%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + AS+ G DR + S +S SYL G PGDYG+D GLS DPE
Sbjct: 38 RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET--- 94
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 95 FSKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDY 149
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R P LG DP Y
Sbjct: 150 LGNPSLVHAQSILAIWATQVILMGAVEGYRIA--GGP--------------LGEVVDPLY 193
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLAD
Sbjct: 194 PGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 252
Query: 263 PVNNN 267
PVNNN
Sbjct: 253 PVNNN 257
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 131/240 (54%), Gaps = 38/240 (15%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
V +AST P G DR L+ S + SYL G PGDYG+D GLS DPE F + +
Sbjct: 49 VSVSASTSP-WYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNR 104
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 105 EL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPS 159
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 160 LVHAQSILAIWACQVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS- 202
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV+NN
Sbjct: 203 FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVSNN 262
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 146/280 (52%), Gaps = 45/280 (16%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQ-----GADRPLWF 59
A + +L+S + + + SA TG+ R +R + PV G DR +
Sbjct: 2 AAATMALSSPSFAGQAVKLSPSASEITGNGR---VSMRKTAAKPVSSSSPWYGPDRVKYL 58
Query: 60 A--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
S +S SYL PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G
Sbjct: 59 GPFSGESPSYLTSEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGC 112
Query: 117 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGF 167
+ PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 113 VFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGA 170
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R G +G DP YPGG F+PLGL +D ++ + K+KE
Sbjct: 171 VEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAFAELKVKE 213
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 214 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
GADR L+ S SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 50 GADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRW 103
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 161
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 162 CQVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEA 204
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 205 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 252
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 134/248 (54%), Gaps = 37/248 (14%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + AS+ G DR + S +S SYL G PGDYG+D GLS DPE
Sbjct: 1 RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET--- 57
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 58 FSKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDY 112
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R P LG DP Y
Sbjct: 113 LGNPSLVHAQSILAIWATQVILMGAVEGYRIA--GGP--------------LGEVVDPLY 156
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLAD
Sbjct: 157 PGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 215
Query: 263 PVNNNVLT 270
PVNNN +
Sbjct: 216 PVNNNAWS 223
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 135/248 (54%), Gaps = 37/248 (14%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + AS+ G DR + S +S SYL G PGDYG+D GLS DPE
Sbjct: 1 RKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET--- 57
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G++ PE+L + G+ E WF+ G I G +Y
Sbjct: 58 FSKNREL---EVIHSRWAMLGALGSVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDY 112
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R P LG DP Y
Sbjct: 113 LGNPSLVHAQSILAIWATQVILMGAVEGYRIA--GGP--------------LGEVVDPLY 156
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLAD
Sbjct: 157 PGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 215
Query: 263 PVNNNVLT 270
PVNNN +
Sbjct: 216 PVNNNAWS 223
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 139/263 (52%), Gaps = 42/263 (15%)
Query: 17 TARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPG 74
T QILG + RK + + S+ G DR + S ++ SYL G PG
Sbjct: 23 TTSQILGEGRI-----TMRKTAGKTKNVSSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPG 77
Query: 75 DYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETA 133
DYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+ E
Sbjct: 78 DYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV 131
Query: 134 LAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGR 184
WF+ G I G +Y +P ++ ++ LMG E R G +G
Sbjct: 132 --WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAIEGYRVAG----GPLGE 185
Query: 185 QYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 244
DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ
Sbjct: 186 VI------------DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 232
Query: 245 GLVTGVGPYQNLLDHLADPVNNN 267
+VTG GP +NL DHLADPVNNN
Sbjct: 233 AIVTGKGPLENLADHLADPVNNN 255
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 142/279 (50%), Gaps = 37/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT + + SS + R + T +R ++ + G DRP +
Sbjct: 1 MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQARITMRRTVRSAPESIWYGPDRPKYLG 60
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+ + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 61 PFSEGTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCL 114
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L K G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 115 FPELLAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLI 172
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 173 EGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEI 215
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 127/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
GADR L+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 51 GADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRW 104
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWG 162
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 163 CQVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEA 205
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 125/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DRPL+ S SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 51 GSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 105 AMLGALGCVTPELLAKNGVKFGEAV--WFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWA 162
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 CQVILMGAVEGYRVA--GGP--------------LGEVEDPIYPGGS-FDPLGLADDPEA 205
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNN 253
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 138/278 (49%), Gaps = 41/278 (14%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSP---TGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
A L+S Q+LG T G V A+S P G DR L+
Sbjct: 15 AFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPW-YGPDRVLYLGP 73
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S + SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G +
Sbjct: 74 FSGEQPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHGRWAMLGALGCVF 127
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y P + ++ LMG E
Sbjct: 128 PELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIE 185
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R P LG DP YPGG F+PLG D + + K+KE+K
Sbjct: 186 GYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGWADDPDAFAELKVKELK 228
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 128/248 (51%), Gaps = 36/248 (14%)
Query: 40 VVRAASTP-PVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEP 95
V+ +TP + G DRP W S + SYL G PGDYG+D GLS DPE + E
Sbjct: 8 TVKGKTTPTSMWYGEDRPKWLGPFSGNTPSYLSGEYPGDYGWDTAGLSADPETFAKYREI 67
Query: 96 KWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP- 154
EVI+ R+AMLGA+G + PE+L K G+ E A+ W I G +Y +P
Sbjct: 68 ------EVIHARWAMLGALGCLTPELLAKNGVSFGE-AVWWKAGAQIFAPGGLDYLGNPS 120
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
+ ++ LMG E R + PG G D YPGG
Sbjct: 121 LVHAQSIIAILASQVLLMGAIEGYRV--YGGPGGEGL--------------DKVYPGGDY 164
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNN 266
F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL HLADP VNN
Sbjct: 165 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLESHLADPSVNN 224
Query: 267 NVLTSLKF 274
+ KF
Sbjct: 225 GFAAATKF 232
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 139/279 (49%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ S+ Q R S G V++A + G DRP +
Sbjct: 1 MATSAIQQSAFVGQTVAKSQNELVRKIGSFGGGRATMRRTVKSAPQS-IWYGEDRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G +
Sbjct: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PEIL K G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 114 FPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGLI 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG D YPGG F+PLGL D ++ + K+KE+
Sbjct: 172 EGYRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEI 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL D + DPV NN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENLFDQINDPVANN 253
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DR L+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 51 GPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 162
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 163 CQVVLMGAIEGYRVAG----GPLGEVV------------DPLYPGG-TFDPLGLADDPEA 205
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
D K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 FADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/277 (37%), Positives = 144/277 (51%), Gaps = 39/277 (14%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVK--QGADRPLWFA-- 60
A + +L+S + + + SA TG+ R A S P G DR +
Sbjct: 2 AAATMALSSPSFAGQAVKLSPSASEITGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPF 61
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 62 SGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 115
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 116 ELLARNGVKFGEAV--WFKAGSQIFREGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 173
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G +G +P YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 174 YRIAG----GPLGEVV------------NPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 216
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 144/279 (51%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT + SS + + + + + + RK +A S P G DR L+
Sbjct: 1 MATTTMALSSPAFAGKAVKNVPSSALFGEARVTMRKTGAKPKATSGSP-WYGPDRVLYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 60 PLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L + G+ Q WF+ G I G +Y +P ++ ++ LMG
Sbjct: 114 FPELLARNGV--QFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R G +G DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 172 EGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKVKEL 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGNGPIENLADHLADPVNNN 253
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 123/217 (56%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 64 SGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 117
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 118 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEG 175
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 176 YRVA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 218
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL+DHLADPVNNN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPLENLVDHLADPVNNN 255
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
GADR L+ S SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 45 GADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRW 98
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 99 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 156
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 157 CQVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEA 199
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 200 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 247
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 146/279 (52%), Gaps = 37/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA ++ SS T + + + ++ + + RK + + AS+ G DR +
Sbjct: 1 MAASSMALSSPTLAGKPVKLTPSSQELGAARFTMRKAATTKKVASSGSPWYGPDRVKYLG 60
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 61 PFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCV 114
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 115 FPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV 172
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R G +G DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 173 EGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKVKEL 215
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 147/280 (52%), Gaps = 44/280 (15%)
Query: 2 ATQALVSSSLTSSV-ETARQILG-ARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
AT AL S + + T+ + G AR T + K AAS+ GADR L+
Sbjct: 4 ATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPK-----PAASSGSPWYGADRVLYL 58
Query: 60 A--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
S + SYL G PGDYG+D GLS DPE F + + L E+I+ R+AMLGA+G
Sbjct: 59 GPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---ELIHSRWAMLGALGC 112
Query: 117 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGF 167
+ PE+L + G+ E WF+ G I G +Y +P ++ +++ LMG
Sbjct: 113 VFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGA 170
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R G +G DP YPGG F+PLGL D ++ + K+KE
Sbjct: 171 VEGYRIAG----GPLGEVV------------DPLYPGG-AFDPLGLADDPEAFAELKVKE 213
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+K GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 214 IKKGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 125/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + L E+I+ R+
Sbjct: 49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---ELIHSRW 102
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 103 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 160
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 161 VQVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDT 203
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ DPV NN
Sbjct: 204 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVTDPVANN 251
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 131/240 (54%), Gaps = 38/240 (15%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
V +AST P G DR L+ S + S+L G PGDYG+D GLS DPE F + +
Sbjct: 49 VSASASTSPW-YGPDRVLYLGPFSGEPPSHLTGEFPGDYGWDTAGLSADPET---FAKNR 104
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 105 EL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPS 159
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 160 LVHAQSILAIWACQVILMGAVEGYRIA--GGP--------------LGEITDPIYPGGS- 202
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 203 FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 146/282 (51%), Gaps = 46/282 (16%)
Query: 2 ATQALVSSSLTSSV----ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPL 57
+T AL S SL TA +ILG + RK + + S+ G DR
Sbjct: 4 STMALSSPSLAGKAIKLGPTASEILGEGRV-----TMRKTAGKPKNVSSGSPWYGPDRVK 58
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+
Sbjct: 59 YLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FSKNREL---EVIHCRWAMLGAL 112
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 113 GCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILM 170
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
G E R G +G DP YPGG F+PLGL D ++ + K+
Sbjct: 171 GAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKV 213
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 20 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 73
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 74 AMLGALGCVFPELLAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 131
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 132 FQVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEA 174
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 175 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANN 222
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 126/231 (54%), Gaps = 34/231 (14%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRY 108
G DR W + + SYL G LPGDYG+D GL SDP + E EVI+ R+
Sbjct: 47 GPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE------AEVIHARW 100
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FV 159
AMLGA+G + PE+L G +P W++ G I A NY +P + F+
Sbjct: 101 AMLGALGVVTPELLAGNG-VPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFL 159
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+A+MG E R+ G GR+ D YPGGP F+PLGL D +
Sbjct: 160 STLAIMGAVEAYRYG--GGVGDFGREL------------DTLYPGGP-FDPLGLANDPDA 204
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
+ + K+KE+KNGRLAM+A+LG++VQ LVT GP +NL HLADP +NN+ +
Sbjct: 205 LAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFS 255
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRY 108
G DR W + + SYL G LPGDYG+D GL SDP + E EVI+ R+
Sbjct: 282 GPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE------AEVIHARW 335
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV 141
AMLGA+G + PE+L G +P W++ G
Sbjct: 336 AMLGALGVVTPELLAGNG-VPFGEGAVWYKAGA 367
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 33/184 (17%)
Query: 78 FDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAW 136
FDPLGL+ DP+ L E+ NGR AM+ +G ++ KAG + T
Sbjct: 193 FDPLGLANDPDALAE------LKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTF--- 243
Query: 137 FQTGVIPPAGTYNYWADPYT--LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL 194
+ ADP + +F FA R + ++ + Y K+L
Sbjct: 244 -------------HLADPSSNNIFSFTSGFAMFAASGR-KSAPKSDNLSQWYGPDRAKWL 289
Query: 195 GG-SGD-PAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
G +G+ P+Y PG ++ GLG D ++ ++ EV + R AML LG L+
Sbjct: 290 GPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELL 349
Query: 248 TGVG 251
G G
Sbjct: 350 AGNG 353
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 146/279 (52%), Gaps = 37/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA ++ SS T + + + ++ + + RK + + AS+ G DR +
Sbjct: 1 MAASSMALSSPTLAGKPVKLTPSSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLG 60
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 61 PFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCV 114
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 115 FPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV 172
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 173 EGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEL 215
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 131/245 (53%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + ++ GADR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 35 RKTTAKAKQVASSSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET--- 91
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 92 FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDY 146
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ + LMG E R P LG DP Y
Sbjct: 147 LGNPSLVHAQSILAIWACQAVLMGAVEGYRIA--GGP--------------LGEIVDPLY 190
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ D
Sbjct: 191 PGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITD 249
Query: 263 PVNNN 267
PVNNN
Sbjct: 250 PVNNN 254
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 132/245 (53%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + AS+ G DR + S ++ SYL G PGDYG+D GLS DPE
Sbjct: 36 RKSVAKAKPASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET--- 92
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 93 FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDY 147
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R G +G DP Y
Sbjct: 148 LGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVV------------DPLY 191
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLAD
Sbjct: 192 PGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 250
Query: 263 PVNNN 267
PVNNN
Sbjct: 251 PVNNN 255
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/282 (38%), Positives = 145/282 (51%), Gaps = 46/282 (16%)
Query: 2 ATQALVSSSLTSSV----ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPL 57
+T AL S SL TA +I+G + RK + + + G DR
Sbjct: 4 STMALSSPSLAGKAVKLGPTASEIIGEGRI-----TMRKTAGKPKTVQSSSPWYGPDRVK 58
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+
Sbjct: 59 YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGAL 112
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 113 GCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILM 170
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
G E R P LG DP YPGG F+PLGL D ++ + K+
Sbjct: 171 GAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKV 213
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 110/282 (39%), Positives = 145/282 (51%), Gaps = 43/282 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTG---SSRKGSFVVRAASTPPVKQGADRPL 57
MA+ L SS+ TS I SA S RK + V + +P G DR
Sbjct: 1 MASMTL-SSTFTSKAVPLNGITEFSSATCCGNGRVSMRKAAGKVADSGSP--WYGPDRVK 57
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+
Sbjct: 58 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGAL 111
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 112 GCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLM 169
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
G E R P LG DP YPGG F+PLGL D ++ + K+
Sbjct: 170 GAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKV 212
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 213 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 133/245 (54%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + AS+ G DR + S + SYL G PGDYG+D GLS DPE
Sbjct: 8 RKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET--- 64
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 65 FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDY 119
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ +++ LMG E R P LG DP Y
Sbjct: 120 LGNPSLVHAQSILAIWAVQVILMGAVEGYRIA--GGP--------------LGEVVDPLY 163
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLAD
Sbjct: 164 PGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 222
Query: 263 PVNNN 267
PVNNN
Sbjct: 223 PVNNN 227
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 144/279 (51%), Gaps = 37/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA + SS T + + + + + + RK + + S+ GADR L+
Sbjct: 1 MAATTMSLSSSTFAGKAVKNVPSSALFGEARVTMRKTTAKAKQVSSGSPWYGADRVLYLG 60
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 61 PLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FSKNREL---EVIHCRWAMLGALGCV 114
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 115 FPELLARNGVKFGEAV--WFKAGSQIFNEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV 172
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 173 EGYRVA--GGP--------------LGEIVDPLYPGGS-FDPLGLADDPEAFAELKVKEI 215
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DH+ DPVNNN
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPLENLGDHITDPVNNN 254
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 127/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR L+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 51 GSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRW 104
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 162
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 163 CQVVLMGAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEA 205
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 206 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 253
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 144/282 (51%), Gaps = 49/282 (17%)
Query: 2 ATQALVSSSLTSSV----ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPL 57
+T AL S S + A ILG S RK F +A S P G DR L
Sbjct: 4 STMALSSPSFAGTTVKLGPNASDILGGGRV-----SMRKTGF--KAPSGSPW-YGPDRVL 55
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+
Sbjct: 56 YLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGAL 109
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 110 GCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILM 167
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
G E R P LG DP YPGG F+PLGL D ++ + K+
Sbjct: 168 GAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKV 210
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 211 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 130/240 (54%), Gaps = 42/240 (17%)
Query: 45 STPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
+T PV G+ DR L+ S + SYL G PGDYG+D GLS DPE F +
Sbjct: 38 TTKPVPSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNR 94
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 95 EL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPS 149
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 150 LIHAQSILAIWACQVILMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS- 192
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 193 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 130/242 (53%), Gaps = 42/242 (17%)
Query: 43 AASTPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIE 94
AA PV G+ DR L+ S SYL G PGDYG+D GLS DPE F +
Sbjct: 59 AAKAKPVSSGSPWYGSDRVLYLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPET---FAK 115
Query: 95 PKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWAD 153
+ L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +
Sbjct: 116 NREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGN 170
Query: 154 P--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 205
P ++ ++ LMG E R P LG DP YPGG
Sbjct: 171 PSLVHAQSILAIWACQVVLMGAVEGYRVA--GGP--------------LGEIVDPLYPGG 214
Query: 206 PLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVN 265
F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVN
Sbjct: 215 S-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVN 273
Query: 266 NN 267
NN
Sbjct: 274 NN 275
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 137/259 (52%), Gaps = 45/259 (17%)
Query: 26 SAQSPTGSSRKGSFVVRAASTPPVKQ-----GADRPLWFA--SKQSLSYLDGSLPGDYGF 78
SA TG+ R +R PV G DR + S ++ SYL G PGDYG+
Sbjct: 23 SASEITGNGR---VSMRKTVAKPVASSSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGW 79
Query: 79 DPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWF 137
D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF
Sbjct: 80 DTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WF 131
Query: 138 QTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFL 188
+ G I G +Y +P ++ ++ LMG E R G +G
Sbjct: 132 KAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAG----GPLGEVV-- 185
Query: 189 GFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT 248
DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VT
Sbjct: 186 ----------DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 249 GVGPYQNLLDHLADPVNNN 267
G GP +NL DHLADPVNNN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 145/279 (51%), Gaps = 37/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ S + + + + + + + RK + + S+ G+DR L+
Sbjct: 1 MATTAMALSPSSFAGKAVKDLPSSALFGEARVTMRKTAAKAKPVSSGSPWYGSDRVLYLG 60
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 61 PLSGDPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCV 114
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 115 FPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV 172
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R G +G DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 173 EGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEAFAELKVKEI 215
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/286 (37%), Positives = 146/286 (51%), Gaps = 52/286 (18%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGS--FVVRAASTPPVKQGA----- 53
MA A+ SS T + G SP +G+ F +R ++ V G+
Sbjct: 1 MAASAMALSSPT--------LAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGP 52
Query: 54 DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAM 110
DR + S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AM
Sbjct: 53 DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAM 106
Query: 111 LGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLE 161
LGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 107 LGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 162 MALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMK 221
+ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 165 VVLMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFA 207
Query: 222 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 127/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR L+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 50 GSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRW 103
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 161
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 162 CQVVLMGAVEGYRVAG----GPLGEIV------------DPLYPGGS-FDPLGLADDPEA 204
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 205 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 252
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/277 (37%), Positives = 142/277 (51%), Gaps = 40/277 (14%)
Query: 6 LVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQGADRPLWFA-- 60
+ +S++ S + +L ++ G F +R S P + G DRP +
Sbjct: 1 MATSTIQQSAFVGQTLLKQQNELVRKVGGNGGRFSMRRTVKSAPQSIWYGPDRPKYLGPF 60
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G + P
Sbjct: 61 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFP 114
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
EIL K G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 115 EILSKNGVKFGEAV--WFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEG 172
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG D YPGG F+PLGL D + + K+KE+KN
Sbjct: 173 YRVG--GGP--------------LGEGLDKIYPGGA-FDPLGLADDPDAFAELKVKELKN 215
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPVANN 252
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 125/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
GADR L+ S SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 50 GADRVLYLGPLSGSPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRW 103
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 161
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 162 CQVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEA 204
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPVNNN
Sbjct: 205 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL+G PGDYG+D GLS DPE F + L EVI+GR+AMLGA+G I P
Sbjct: 59 SAQTPSYLNGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 112
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 113 EVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEG 171
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G + G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 172 FRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 215
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+F+Q +VTG GP +NLLDHL DPV NN
Sbjct: 216 GRLAMFSMFGFFIQAIVTGKGPLENLLDHLDDPVANN 252
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 134/247 (54%), Gaps = 37/247 (14%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGT 89
+ RK + + AS+ G DR + S + SYL G PGDYG+D GLS DPE
Sbjct: 6 TMRKAATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET- 64
Query: 90 GGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTY 148
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G
Sbjct: 65 --FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGL 117
Query: 149 NYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
+Y +P ++ +++ LMG E R P LG DP
Sbjct: 118 DYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA--GGP--------------LGEVVDP 161
Query: 201 AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL
Sbjct: 162 LYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 220
Query: 261 ADPVNNN 267
ADPVNNN
Sbjct: 221 ADPVNNN 227
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 134/247 (54%), Gaps = 37/247 (14%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGT 89
+ RK + + AS+ G DR + S + SYL G PGDYG+D GLS DPE
Sbjct: 4 TMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET- 62
Query: 90 GGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTY 148
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G
Sbjct: 63 --FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGL 115
Query: 149 NYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
+Y +P ++ +++ LMG E R P LG DP
Sbjct: 116 DYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA--GGP--------------LGEVVDP 159
Query: 201 AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL
Sbjct: 160 LYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 218
Query: 261 ADPVNNN 267
ADPVNNN
Sbjct: 219 ADPVNNN 225
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 131/242 (54%), Gaps = 42/242 (17%)
Query: 43 AASTPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIE 94
AA PV G+ DR L+ S + SYL G PGDYG+D GLS DPE F +
Sbjct: 38 AAKAKPVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAK 94
Query: 95 PKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWAD 153
+ L E+I+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +
Sbjct: 95 NREL---ELIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGN 149
Query: 154 P--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 205
P ++ ++ LMG E R G +G DP YPGG
Sbjct: 150 PSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEIV------------DPLYPGG 193
Query: 206 PLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVN 265
F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVN
Sbjct: 194 S-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
Query: 266 NN 267
NN
Sbjct: 253 NN 254
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 139/278 (50%), Gaps = 41/278 (14%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSP---TGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
A L+S Q+LG T G V A+S P G DR L+
Sbjct: 15 AFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPW-YGPDRVLYLGP 73
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 74 FSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVF 127
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y P ++ ++ LMG E
Sbjct: 128 PELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPNLVHAQSILAIWACQVILMGAIE 185
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R P LG DP YPGG F+PLGL D + + K+KE+K
Sbjct: 186 GYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGLADDPDAFAELKVKELK 228
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 126/231 (54%), Gaps = 34/231 (14%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRY 108
G DR W + + SYL G LPGDYG+D GL SDP + E EVI+ R+
Sbjct: 99 GPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE------AEVIHARW 152
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FV 159
AMLGA+G + PE+L G +P W++ G I A NY +P + F+
Sbjct: 153 AMLGALGVVTPELLAGNG-VPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFL 211
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+A+MG E R+ G GR+ D YPGGP F+PLGL D +
Sbjct: 212 STLAIMGAVEAYRYG--GGVGDFGREL------------DTLYPGGP-FDPLGLANDPDA 256
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
+ + K+KE+KNGRLAM+A+LG++VQ LVT GP +NL HLADP +NN+ +
Sbjct: 257 LAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFS 307
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 122/231 (52%), Gaps = 39/231 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRY 108
G DR W + + SYL G LPGDYG+D GL SDP + E EVI+ R+
Sbjct: 334 GPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE------AEVIHARW 387
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FV 159
AML + PE+L G +P W++ G I A NY +P + F+
Sbjct: 388 AML-----VTPELLAGNG-VPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFL 441
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+A+MG E R+ G GR+ D YPGGP F+PLGL D +
Sbjct: 442 STLAIMGAVEAYRYG--GGVGDFGREL------------DTLYPGGP-FDPLGLANDPDA 486
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
+ + K+KE+KNGRLAM+A+LG++VQ LVT GP +NL HLADP +NN+ +
Sbjct: 487 LAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFS 537
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Query: 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLD 258
D YPGGP F+PLGL D ++ + K+KE+KNGRLAM+A+LG++VQ LVT GP +NL
Sbjct: 2 DTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTF 60
Query: 259 HLADPVNNNVLT 270
HLADP +NN+ +
Sbjct: 61 HLADPSSNNIFS 72
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 33/184 (17%)
Query: 78 FDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAW 136
FDPLGL+ DP+ L E+ NGR AM+ +G ++ KAG + T
Sbjct: 10 FDPLGLANDPDALAE------LKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTF--- 60
Query: 137 FQTGVIPPAGTYNYWADPYT--LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL 194
+ ADP + +F FA R + ++ + Y K+L
Sbjct: 61 -------------HLADPSSNNIFSFTSGFAMFAASGR-KSAPKSDNLSQWYGPDRAKWL 106
Query: 195 GG-SGD-PAYPGGPL-----FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
G +G+ P+Y G L ++ GLG D ++ ++ EV + R AML LG L+
Sbjct: 107 GPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELL 166
Query: 248 TGVG 251
G G
Sbjct: 167 AGNG 170
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 134/247 (54%), Gaps = 37/247 (14%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGT 89
+ RK + + AS+ G DR + S + SYL G PGDYG+D GLS DPE
Sbjct: 4 TMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET- 62
Query: 90 GGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTY 148
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G
Sbjct: 63 --FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGL 115
Query: 149 NYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
+Y +P ++ +++ LMG E R P LG DP
Sbjct: 116 DYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA--GGP--------------LGEVVDP 159
Query: 201 AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL
Sbjct: 160 LYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 218
Query: 261 ADPVNNN 267
ADPVNNN
Sbjct: 219 ADPVNNN 225
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 138/278 (49%), Gaps = 41/278 (14%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSP---TGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
A L+S Q+LG T G V A+S P G DR L+
Sbjct: 15 AFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPW-YGPDRVLYLGP 73
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S + SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G +
Sbjct: 74 FSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHGRWAMLGALGCVF 127
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y P + ++ LMG E
Sbjct: 128 PELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIE 185
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R P LG DP YPGG F+PLG D + + K+KE+K
Sbjct: 186 GYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGWADDPDAFAELKVKELK 228
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 144/287 (50%), Gaps = 50/287 (17%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA+ + ++S + +T LG A + R V AA+ + G D LW+
Sbjct: 1 MASTIMAATSRIVAAKT--PFLGQGRAAANASPLRD---VAAAAAGGRITMGND--LWYG 53
Query: 61 ----------SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
S Q+ SYL G PGDYG+D GLS DPE F + L EVI+GR+A
Sbjct: 54 PDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWA 107
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------L 160
MLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 108 MLGALGCITPEVLEKWVRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGF 166
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R G + G G+ YPGG F+PLGL D +
Sbjct: 167 QVILMGLVEGFRIN--------------GLDGV--GEGNNLYPGGQYFDPLGLADDPVTF 210
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL DPV NN
Sbjct: 211 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 257
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 138/278 (49%), Gaps = 41/278 (14%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSP---TGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
A L+S Q+LG T G V A+S P G DR L+
Sbjct: 15 AFTGGQLSSVKPQNNQLLGVGGGHGEARLTMREATGKKSVAASSDSPW-YGPDRVLYLGP 73
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S + SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G +
Sbjct: 74 FSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHGRWAMLGALGCVF 127
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y P + ++ LMG E
Sbjct: 128 PELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIE 185
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R P LG DP YPGG F+PLG D + + K+KE+K
Sbjct: 186 GYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGWADDPDAFAELKVKELK 228
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 138/278 (49%), Gaps = 41/278 (14%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSP---TGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
A L+S Q+LG T G V A+S P G DR L+
Sbjct: 15 AFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPW-YGPDRVLYLGP 73
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S + SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G +
Sbjct: 74 FSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHGRWAMLGALGCVF 127
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y P + ++ LMG E
Sbjct: 128 PELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPNLIHAQSILAILACQVILMGAIE 185
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R P LG DP YPGG F+PLG D + + K+KE+K
Sbjct: 186 GYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGWADDPDAFAELKVKELK 228
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 134/247 (54%), Gaps = 37/247 (14%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGT 89
+ RK + + AS+ G DR + S + SYL G PGDYG+D GLS DPE
Sbjct: 6 TMRKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET- 64
Query: 90 GGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTY 148
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G
Sbjct: 65 --FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGL 117
Query: 149 NYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
+Y +P ++ +++ LMG E R P LG DP
Sbjct: 118 DYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA--GGP--------------LGEVVDP 161
Query: 201 AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL
Sbjct: 162 LYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 220
Query: 261 ADPVNNN 267
ADPVNNN
Sbjct: 221 ADPVNNN 227
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 144/280 (51%), Gaps = 40/280 (14%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSS-RKGSFVVRAASTPPVKQGADRPLWF 59
MA+ A +SS T V A LG +P GS R + + G DR +
Sbjct: 1 MASMAATASSTT--VVKATPFLGQTKNANPLRDVVAMGS--ARFTMSNDLWYGPDRVKYL 56
Query: 60 A--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
S Q+ SYL+G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G
Sbjct: 57 GPFSAQTPSYLNGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGC 110
Query: 117 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGF 167
I PE+L K + + + WF+ G I G +Y +P + ++ LMG
Sbjct: 111 IFPEVLEKWVKVDFKEPV-WFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGL 169
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R PG G G+ YPGG F+PLGL D + + K+KE
Sbjct: 170 VEGFRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPTTFAELKVKE 213
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 214 IKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 138/278 (49%), Gaps = 41/278 (14%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSP---TGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
A L+S Q+LG T G V A+S P G DR L+
Sbjct: 15 AFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPW-YGPDRVLYLGP 73
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S + SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G +
Sbjct: 74 FSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHGRWAMLGALGCVF 127
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y P + ++ LMG E
Sbjct: 128 PELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIE 185
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R P LG DP YPGG F+PLG D + + K+KE+K
Sbjct: 186 GYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGWADDPDAFAELKVKELK 228
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|45269111|gb|AAS56914.1| CAB-like protein [Ipomoea nil]
Length = 96
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/80 (83%), Positives = 73/80 (91%), Gaps = 1/80 (1%)
Query: 197 SGDPAYP-GGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN 255
S DP+ GGP+FNPLG GKDEKS+KD KLKEVKNGRLAMLAILGYF+Q LVTGVGPYQN
Sbjct: 17 SVDPSNTLGGPIFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFIQALVTGVGPYQN 76
Query: 256 LLDHLADPVNNNVLTSLKFH 275
LLDHLADPVNNN+LT+LKFH
Sbjct: 77 LLDHLADPVNNNILTNLKFH 96
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 64 SGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 117
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 118 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 175
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G +G DP YPGG F+PLGL +D ++ + K+K +KN
Sbjct: 176 YRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAFAELKVKHIKN 218
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 138/278 (49%), Gaps = 41/278 (14%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSP---TGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
A L+S Q+LG T G V A+S P G DR L+
Sbjct: 15 AFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPW-YGPDRVLYLGP 73
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S + SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G +
Sbjct: 74 FSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHGRWAMLGALGCVF 127
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y P + ++ LMG E
Sbjct: 128 PELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIE 185
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R P LG DP YPGG F+PLG D + + K+KE+K
Sbjct: 186 GYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGWADDPDAFAELKVKELK 228
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 122/217 (56%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 62 SGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 115
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ +++ LMG E
Sbjct: 116 ELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEG 173
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 174 YRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKEIKN 216
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 122/217 (56%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 64 SGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 117
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 118 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEG 175
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 176 YRVA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 218
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP NL+DHLADPVNNN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNN 255
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 125/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDY +D GLS DPE F + L EVI+ R+
Sbjct: 39 GPDRPKYLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPET---FARNREL---EVIHSRW 92
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 93 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 150
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 151 VQVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDT 193
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 194 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 241
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 144/282 (51%), Gaps = 49/282 (17%)
Query: 2 ATQALVSSSLTSSV----ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPL 57
+T AL S S + A ILG S RK F +A S P G DR L
Sbjct: 4 STMALSSPSFAGTXVKLGPNASDILGGGRV-----SMRKTGF--KAPSGSPW-YGPDRVL 55
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+
Sbjct: 56 YLGPLSGDPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGAL 109
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 110 GCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILM 167
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
G E R P LG DP YPGG F+PLGL D ++ + K+
Sbjct: 168 GAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKV 210
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 211 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 123/217 (56%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 64 SGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 117
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 118 ELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG 175
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL +D ++ + K+KE+KN
Sbjct: 176 YRVA--GGP--------------LGEITDPLYPGGS-FDPLGLAEDPEAFAELKVKELKN 218
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 122/217 (56%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 62 SGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 115
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 116 ELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG 173
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G +G DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 174 YRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 216
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 139/278 (50%), Gaps = 41/278 (14%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSP---TGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
A L+S Q+LG T G V A+S P G DR L+
Sbjct: 15 AFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPW-YGPDRVLYLGP 73
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 74 FSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVF 127
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y P ++ ++ LMG E
Sbjct: 128 PELLARNGVKFGEAV--WFKAGAQIFSEGWLDYLGSPNLVHAQSILAIWACQVILMGAIE 185
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R P LG DP YPGG F+PLGL D + + K+KE+K
Sbjct: 186 GYRVA--GGP--------------LGEVTDPIYPGGN-FDPLGLADDPDAFAELKVKELK 228
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 137/258 (53%), Gaps = 44/258 (17%)
Query: 29 SPTGSSRKGS--FVVRAASTPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFD 79
SP +G+ F +R ++ V G+ DR + S + SYL G PGDYG+D
Sbjct: 21 SPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWD 80
Query: 80 PLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQ 138
GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+
Sbjct: 81 TAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFK 132
Query: 139 TGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
G I G +Y +P ++ ++ LMG E R P
Sbjct: 133 AGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA--GGP---------- 180
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG
Sbjct: 181 ----LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
Query: 250 VGPYQNLLDHLADPVNNN 267
GP +NL DHLADPVNNN
Sbjct: 236 KGPLENLADHLADPVNNN 253
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 138/271 (50%), Gaps = 41/271 (15%)
Query: 10 SLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVK-QGADRPLWFASKQSLS-- 66
+L ++ E + I Q+ SR+ S V+ + V+ G +RP + QS +
Sbjct: 48 ALVNAGEIMKNIAQIDGKQNIGELSREVSCVMGVKAACNVEWYGENRPKYLGPFQSYTPA 107
Query: 67 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125
YL G PGDYG+D GLS DP G+ E EVI+ R+AMLGA+G I PE+L A
Sbjct: 108 YLTGEFPGDYGWDSAGLSADPLTFKGYRET------EVIHARWAMLGALGCIFPELLNSA 161
Query: 126 GL-IPQETALAWFQTGVIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDW 176
G +P WF+ G +Y +P + +++ LMG +E RF
Sbjct: 162 GFNLP-----VWFKAGGTIFENGIDYLGNPNLVHAQSALAVLSVQVVLMGASEAYRF--- 213
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
N G +G D YPGG F+PLG KD + K+KE+KNGRLAM
Sbjct: 214 -NGGPLGE------------PADVLYPGGA-FDPLGFAKDPSKAAELKVKEIKNGRLAMT 259
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
A+LGY+VQ L TG GP +NL +HLADP NN
Sbjct: 260 AMLGYYVQALATGKGPIENLSEHLADPSKNN 290
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DR L+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 46 GPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 99
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 100 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 157
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 158 CQVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEA 200
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 201 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 248
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DR L+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 51 GPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 162
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 163 CQVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEA 205
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 146/279 (52%), Gaps = 37/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA ++ SS T + + + ++ + + RK + + AS+ G DR +
Sbjct: 1 MAASSMALSSPTLAGKPVKLSPSSQELGASRFTMRKSATTKKVASSGSPWYGPDRVKYLG 60
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 61 PFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCV 114
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 115 FPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAV 172
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 173 EGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEL 215
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 130/245 (53%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + S+ G DR + S S SYL G PGDYG+D GLS DPE
Sbjct: 36 RKTVIKAKPVSSGSPWYGPDRVKYLGPFSGNSPSYLTGEFPGDYGWDTAGLSADPET--- 92
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 93 FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDY 147
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R G +G DP Y
Sbjct: 148 LGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEVV------------DPLY 191
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLAD
Sbjct: 192 PGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 250
Query: 263 PVNNN 267
PVNNN
Sbjct: 251 PVNNN 255
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 124/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G GDYG+D GLS DPE F + L EVI+ R+
Sbjct: 49 GPDRPKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPET---FARNREL---EVIHSRW 102
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 103 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 160
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 161 SQVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDT 203
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNG LAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 204 FAELKVKELKNGSLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 119/217 (54%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + L EVI+GR+AMLGA+G I P
Sbjct: 67 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 120
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 121 EVLEKWVRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEG 179
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G + G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 180 FRIN--------------GLDGV--GEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKN 223
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL DPV NN
Sbjct: 224 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 260
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 133/245 (54%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + AS+ G DR + S + SYL G PGDYG+D GLS DPE
Sbjct: 8 RKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET--- 64
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 65 FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDY 119
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ +++ LMG E R P LG DP Y
Sbjct: 120 LGNPSLVHAQSILAIWAVQVILMGAVEGYRIA--GGP--------------LGEVVDPLY 163
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLAD
Sbjct: 164 PGGS-FDPLGLADDPEAFAEXKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 222
Query: 263 PVNNN 267
PVNNN
Sbjct: 223 PVNNN 227
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DR L+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 52 GPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 105
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 163
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 164 CQVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEA 206
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 207 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 254
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/240 (41%), Positives = 131/240 (54%), Gaps = 42/240 (17%)
Query: 45 STPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
+T PV G+ DR + S + SYL G PGDYG+D GLS DPE F + +
Sbjct: 37 TTKPVPSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNR 93
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 94 EL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPS 148
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 149 LIHAQSILAIWATQVVLMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS- 191
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D ++ + K+KE+KNGRLAM ++LG+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 192 FDPLGLADDPEAFAELKVKELKNGRLAMFSMLGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 119/212 (56%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 67 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAR 120
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 121 NGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVA- 177
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 178 -GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 222 FSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 123/219 (56%), Gaps = 25/219 (11%)
Query: 57 LWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
+W + ++L LPGDYGFDPL L DPE + KW E+ +GR+AMLG G
Sbjct: 1 MWMPGATAPAHLKNELPGDYGFDPLELGKDPE------DLKWYVQAELQHGRWAMLGVAG 54
Query: 116 AIAPEILGKAGL--IPQETALAWFQTGVIPPAGTYN-YWADPYTLFVLEMALMGFAEHRR 172
A APEIL G+ +P W + A +Y+ Y+ D TLF ++M +M +AE RR
Sbjct: 55 AAAPEILTNMGISNLPN-----WHE------APSYDGYFTDATTLFWVQMLMMNWAEVRR 103
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 232
+QD PGS+ F +G YPGG +F+PLG K + +K K KE+ NGR
Sbjct: 104 WQDIRKPGSVSEDP-TPFSNAKLPAGVVGYPGG-IFDPLGYAKGD--LKTLKAKEIANGR 159
Query: 233 LAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
LAM+A G VQ TGVGP NL+ H+ADP +NNV +
Sbjct: 160 LAMVAFAGIMVQYDHTGVGPVANLVSHMADPAHNNVFAA 198
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 146/286 (51%), Gaps = 37/286 (12%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFAS 61
A +A+ +SSL ++ Q A +A++ + R AS V G DRP W
Sbjct: 55 AVKAIANSSLGKQLQERMQETKA-AAENSRSAVDAARMRARDAS---VWFGQDRPKWLGP 110
Query: 62 --KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
+L GS PGDYGFD GL DP F E+++ R+AML A+G +
Sbjct: 111 IPYDYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFN------FEILHARWAMLAALGVVI 164
Query: 119 PEILGKA-GLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLFVLEMALMG 166
PE+L K G+ E+ W++ G G T +Y P + + + LM
Sbjct: 165 PEVLEKFFGVKFAESV--WWRVGYAKLEGDTLDYLGIPGLHIVGAQGILVIAICQFLLMV 222
Query: 167 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
E+ R+ G + YL GD YPGG LF+PLGL KD + ++ K+K
Sbjct: 223 GPEYARY--------CGIEALEPLGIYL--PGDINYPGGVLFDPLGLSKDPATFEELKVK 272
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
E+KNGRLAM+A LG++VQ LVT GP +NLLDHL DP++NN +TS+
Sbjct: 273 EIKNGRLAMVAWLGFYVQALVTKKGPLENLLDHLQDPLHNNAVTSI 318
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 148/282 (52%), Gaps = 47/282 (16%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVR--AASTPPVKQGA-----DRPL 57
A + +L+SS + + + S+ TG+ R F +R AA PV G+ DR
Sbjct: 2 AAATMALSSSTFAGKAVKLSPSSSEITGNGR---FTMRKTAAKAKPVSSGSPWYGPDRVK 58
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+A+L +
Sbjct: 59 YLGPFSGEAPSYLTGEKPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAILERL 112
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 113 GCVFPELLSRNGVKFGEAV--WFKVGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLM 170
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
G E R P LG DP YPGG F+PLGL D ++ + K+
Sbjct: 171 GAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKV 213
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 142/280 (50%), Gaps = 40/280 (14%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
AT AL S S A ++ + S S G V ++A + G DR +
Sbjct: 4 ATMALSSPSFAGQ---AVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCDF 114
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 115 PELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 172
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R P LG DP YPGG F+PLGL D ++ + K+KE+K
Sbjct: 173 GYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIK 215
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
NGRLAM + G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 NGRLAMFSTFGFFVQAIVTGKGPLENLADHLADPVNNNAC 255
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 122/217 (56%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 29 SGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 82
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 83 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG 140
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 141 YRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 183
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 184 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 220
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 116/210 (55%), Gaps = 17/210 (8%)
Query: 57 LWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
LWF ++LDGSLP DYGFDPL L SDP+ W+ E+++ R+AM+G G
Sbjct: 1 LWFPGDTPPAHLDGSLPADYGFDPLSLGSDPDMLA------WMRQAELMHCRWAMMGVAG 54
Query: 116 AIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYT-LFVLEMALMGFAEHRRFQ 174
+ P +L K G + WF+ G + + + P++ L ++E MGF E +R+
Sbjct: 55 ILVPALLTKLGAM---NVPVWFEAGKVANDNS----SVPFSALLMVEFLAMGFVETKRWY 107
Query: 175 DWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRL 233
D +PGS G G G YPGG F+P G K E+S K ++KE+ NGRL
Sbjct: 108 DIKSPGSQGDGSIFGITDDFKGK-SVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGRL 166
Query: 234 AMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
AM+A++G++ Q TG GP NL DH+ADP
Sbjct: 167 AMVAMVGFWAQYAATGKGPVDNLFDHIADP 196
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 146/286 (51%), Gaps = 37/286 (12%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFAS 61
A +A+ +SSL ++ Q A +A++ + R AS V G DRP W
Sbjct: 55 AVKAIANSSLGKQLQERMQETKA-AAENSRSAVDAARMRARDAS---VWFGQDRPKWLGP 110
Query: 62 --KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
+L GS PGDYGFD GL DP F E+++ R+AML A+G +
Sbjct: 111 IPYDYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFN------FEILHARWAMLAALGVVI 164
Query: 119 PEILGKA-GLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLFVLEMALMG 166
PE+L K G+ E+ W++ G G T +Y P + + + LM
Sbjct: 165 PEVLEKFFGVNFAESV--WWRVGYAKLEGDTLDYLGIPGLHIVGAQGIIVIAICQFLLMV 222
Query: 167 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
E+ R+ G + YL GD YPGG LF+PLGL KD + ++ K+K
Sbjct: 223 GPEYARY--------CGIEALEPLGIYL--PGDINYPGGVLFDPLGLSKDPATFEELKVK 272
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
E+KNGRLAM+A LG++VQ LVT GP +NLLDHL DP++NN +TS+
Sbjct: 273 EIKNGRLAMVAWLGFYVQALVTKKGPLENLLDHLQDPLHNNAVTSI 318
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 129/240 (53%), Gaps = 42/240 (17%)
Query: 45 STPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
+T PV G+ DR L+ S + SYL G PGDYG+D GLS DPE F +
Sbjct: 38 TTKPVPSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNR 94
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 95 EL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPS 149
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 150 LIHAQSILAIWACQVILMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS- 192
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLG D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 193 FDPLGFADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 124/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 49 GPDRPKYLGPFSEQTPSYLTGKFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 102
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 103 AMLGALGCFFPEILSKNGVNFGEAV--WFKAGAQIFSEGGLDYLGNPALVRPQSILAIWA 160
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+++ LMGF E R P LG D YPGG F+ LGL +D +
Sbjct: 161 VQVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDHLGLAEDPDT 203
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+FK+KE NGRLAM ++LG+FVQ +VTG GP +N DH+ADPV NN
Sbjct: 204 FAEFKVKEFNNGRLAMFSMLGFFVQAIVTGKGPIENFFDHVADPVANN 251
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA G I P
Sbjct: 59 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGAFGCITP 112
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 113 EVLEKWVKVDFKEPV-WFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVES 171
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 172 FRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPVTLAELKVKEIKN 215
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 252
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 105/277 (37%), Positives = 145/277 (52%), Gaps = 40/277 (14%)
Query: 6 LVSSSLTSSVETARQILGARS--AQSPTGSSRKGSFVVRAASTP-PVKQGADRPLWFA-- 60
+ +S++ S + IL ++ + G+ + S S P + G DRP +
Sbjct: 1 MATSTIQQSAFAGQTILKPQNELVRKFGGNGGRASMRRTVKSAPQSIWYGPDRPKYLGPF 60
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 61 SEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 114
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
EIL K G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 115 EILSKNGVKFGEAV--WFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEG 172
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG D YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 173 YRVG--GGP--------------LGEGLDKLYPGGA-FDPLGLADDPEAFAELKVKELKN 215
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPVANN 252
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 119/217 (54%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + L EVI+GR+AMLGA+G I P
Sbjct: 62 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 115
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 116 EVLQKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEG 174
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 175 YRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 218
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 134/257 (52%), Gaps = 46/257 (17%)
Query: 31 TGSSRKGSFVVRAASTPPVKQGADRPLWFA----------SKQSLSYLDGSLPGDYGFDP 80
GS +G +R + P + P W+ S + SYL G PGDYG+D
Sbjct: 20 VGSFGEGRITMRKTAAKPKVAASGSP-WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDT 78
Query: 81 LGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQT 139
GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+
Sbjct: 79 AGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKA 130
Query: 140 GV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF 190
G I G +Y +P ++ +++ LMG E R G +G
Sbjct: 131 GSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG----GPLGEVV---- 182
Query: 191 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG
Sbjct: 183 --------DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 233
Query: 251 GPYQNLLDHLADPVNNN 267
GP +NL DHLADPVNNN
Sbjct: 234 GPLENLADHLADPVNNN 250
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 125/231 (54%), Gaps = 34/231 (14%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRY 108
G DR W + + SYL G LPGDYG+D GL SDP + E EVI+ R+
Sbjct: 393 GPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE------AEVIHARW 446
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FV 159
AMLGA+G + PE+L G +P W++ G I A NY +P + F+
Sbjct: 447 AMLGALGVVTPELLAGNG-VPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFL 505
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+A+MG E R+ G GR+ D YPGGP F+PLGL D +
Sbjct: 506 STLAIMGAVEAYRYG--GGVGDFGREL------------DTLYPGGP-FDPLGLANDPDA 550
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
+ + K+KE+KNGRLAM+A+LG++VQ LVT GP +NL HLADP NN+ +
Sbjct: 551 LAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFS 601
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 119/223 (53%), Gaps = 26/223 (11%)
Query: 52 GADRPLWF---ASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +RP W + YL G GDYGFD GL+ DP+ + + E+ NGR
Sbjct: 157 GPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRD------AELQNGR 210
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTLFVLEMALMG 166
+AMLG +G +APE+L +P + WF+TG I G+ +Y A+P + + L
Sbjct: 211 WAMLGVLGCLAPEVLSNVFGVPYPEPV-WFKTGATILNGGSIDYLANPKLIHASNLLLTL 269
Query: 167 FAEHRRF---QDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
E F + W G E LG + D +YPGG +F+PLGL KD + +
Sbjct: 270 VLELVFFFAAETWREAG----------EGPLGKAQDKSYPGG-VFDPLGLSKDPAAFAEA 318
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNN 266
K+KEVKNGRLAMLA+LG FVQ VTG P +NL HLA+P N
Sbjct: 319 KVKEVKNGRLAMLAMLGLFVQAGVTGQSPLENLSAHLANPGVN 361
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 81/152 (53%), Gaps = 24/152 (15%)
Query: 128 IPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWAN 178
+P W++ G I A NY +P + F+ +A+MG E R+
Sbjct: 4 VPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYG--GG 61
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
G GR+ D YPGGP F+PLGL D ++ + K+KE+KNGRLAM+A+
Sbjct: 62 VGDFGREL------------DTLYPGGP-FDPLGLANDPDALAELKVKELKNGRLAMVAM 108
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
LG++VQ LVT GP +NL HLADP NN+ +
Sbjct: 109 LGFYVQPLVTKAGPVENLTFHLADPSANNIFS 140
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 72/183 (39%), Gaps = 42/183 (22%)
Query: 78 FDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLI-------- 128
FDPLGL+ DP+ L E+ NGR AM+ +G ++ KAG +
Sbjct: 78 FDPLGLANDPDALAE------LKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLA 131
Query: 129 -PQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYF 187
P + F +G A T + W P W P S G
Sbjct: 132 DPSANNIFSFTSGFAMFAATGSKWYGP-----------------NRPKWLGPLSGG---- 170
Query: 188 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
+YL G Y G F+ GL D K + ++ E++NGR AML +LG ++
Sbjct: 171 -AVPEYLKGE----YAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGVLGCLAPEVL 225
Query: 248 TGV 250
+ V
Sbjct: 226 SNV 228
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 131/240 (54%), Gaps = 37/240 (15%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
V + AS+ G DR + S ++ SYL G PGDYG+D GLS DPE F + +
Sbjct: 37 VTKQASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNR 93
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 94 EL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPS 148
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 149 LVHAQSILAIWATQVILMGAVEGYRIA--GGP--------------LGEITDPIYPGGS- 191
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 192 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 123/217 (56%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 64 SGEAPSYLTGEFPGDYGWDTAGLSADPET---FSKNREL---EVIHCRWAMLGALGCVFP 117
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 118 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG 175
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G +G DP YPGG F+PLGL +D ++ + K+KE+KN
Sbjct: 176 YRVAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAFAELKVKEIKN 218
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 132/245 (53%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + S+ GADR L+ S++ SYL G PGDYG+D GLS DPE
Sbjct: 35 RKTAAKAKQVSSSSPWYGADRVLYLGPLSREPPSYLTGDFPGDYGWDTAGLSADPET--- 91
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 92 FSKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDY 146
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R P LG DP Y
Sbjct: 147 LGNPSLVHAQSILAIWACQVVLMGAVEGYRVA--GGP--------------LGEIVDPLY 190
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL + ++ K+KE+KNGRLAM ++ G+ VQ +VTG GP +NL DH+AD
Sbjct: 191 PGG-RFDPLGLAERPQAFDALKVKEIKNGRLAMFSMFGFLVQAIVTGKGPLENLADHIAD 249
Query: 263 PVNNN 267
PVNNN
Sbjct: 250 PVNNN 254
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 119/217 (54%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + L EVI+GR+AMLGA+G I P
Sbjct: 62 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 115
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 116 EVLQKWVRVSFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEG 174
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 175 YRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 218
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDH+ +PV NN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANN 255
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G I P
Sbjct: 58 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITP 111
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 112 EVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 170
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 171 FRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPATFAELKVKEIKN 214
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 215 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 251
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 126/248 (50%), Gaps = 33/248 (13%)
Query: 42 RAASTPPVKQGADRPLWF--ASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWL 98
R A G DRP W YL G PGDYGFD GL DP +
Sbjct: 87 RGARNNSFWYGGDRPRWLGPVPYDYPEYLTGEYPGDYGFDIAGLGRDPVAFANYFN---- 142
Query: 99 AYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP--- 154
E+++ R+AML A+G + PE+L GL+ W++ G G +Y P
Sbjct: 143 --FEILHCRWAMLAALGVVVPELLDLFGLV-HFVEPVWWKVGYAKLQGDNLDYLGIPGFR 199
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
+ + + LM E+ R+ G + YL GD YPGGPL
Sbjct: 200 IAGGQGVVVIAICQALLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGPL 249
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL KD + +D K+KE+KNGRLAM+A G+++Q VTG GP QNL++HL+DP+NNN
Sbjct: 250 FDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNN 309
Query: 268 VLTSLKFH 275
+L+S FH
Sbjct: 310 ILSS--FH 315
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 125/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DR L+ S SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 88 GPDRVLYLGPLSGAPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 141
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 142 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 199
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 200 CQVVLMGAIEGYRVA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEA 242
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 243 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 290
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 123/217 (56%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 26 SGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 79
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 80 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG 137
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL +D ++ + K+KE+KN
Sbjct: 138 YRVA--GGP--------------LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKN 180
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 181 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 217
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 64 SGEAPSYLTGEFPGDYGWDTAGLSADPET---FSKNREL---EVIHCRWAMLGALGCVFP 117
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 118 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG 175
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G +G DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 176 YRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 218
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 125/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L E+I+ R+
Sbjct: 49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---ELIHSRW 102
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 103 AMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 160
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+++ LMGF E R P LG D YPGG F+PLGL D +
Sbjct: 161 VQVVLMGFVEGYRVG--GGP--------------LGEGLDKVYPGGA-FDPLGLADDPDT 203
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +V G GP +NL DH+ DPV NN
Sbjct: 204 FAELKVKELKNGRLAMFSMFGFFVQAIVRGKGPIENLFDHVTDPVANN 251
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL+G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G I P
Sbjct: 59 SAQTPSYLNGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITP 112
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 113 EVLEKWLKVDFKEPV-WFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 171
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G + G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 172 FRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 215
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL DPV NN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 252
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 133/245 (54%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + S+ G+DR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 2 RKTAAKAKPVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET--- 58
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L E+I+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 59 FAKNREL---ELIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDY 113
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R G +G DP Y
Sbjct: 114 LGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGEIV------------DPLY 157
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLAD
Sbjct: 158 PGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 216
Query: 263 PVNNN 267
PVNNN
Sbjct: 217 PVNNN 221
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 101/258 (39%), Positives = 137/258 (53%), Gaps = 44/258 (17%)
Query: 29 SPTGSSRKGS--FVVRAASTPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFD 79
SP +G+ F +R ++ V G+ DR + S + SYL G PGDYG+D
Sbjct: 11 SPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWD 70
Query: 80 PLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQ 138
GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+
Sbjct: 71 TAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFK 122
Query: 139 TGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
G I G +Y +P ++ ++ LMG E R P
Sbjct: 123 AGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA--GGP---------- 170
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG
Sbjct: 171 ----LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 225
Query: 250 VGPYQNLLDHLADPVNNN 267
GP +NL DHLADPVNNN
Sbjct: 226 KGPLENLADHLADPVNNN 243
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G I P
Sbjct: 58 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITP 111
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 112 EVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 170
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 171 FRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKN 214
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 215 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 251
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 119/212 (56%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 66 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAR 119
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 120 NGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRIA- 176
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 177 -GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFSELKVKEIKNGRLAM 220
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 221 FSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 125/231 (54%), Gaps = 34/231 (14%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRY 108
G DR W + + SYL G LPGDYG+D GL SDP + E EVI+ R+
Sbjct: 136 GPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE------AEVIHARW 189
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FV 159
AMLGA+G + PE+L G +P W++ G I A NY +P + F+
Sbjct: 190 AMLGALGVVTPELLAGNG-VPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFL 248
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+A+MG E R+ G GR+ D YPGGP F+PLGL D +
Sbjct: 249 STLAIMGAVEAYRYG--GGVGDFGREL------------DTLYPGGP-FDPLGLANDPDA 293
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
+ + K+KE+KNGRLAM+A+LG++VQ LVT GP +NL HLADP NN+ +
Sbjct: 294 LAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFS 344
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 125/231 (54%), Gaps = 34/231 (14%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRY 108
G DR W + + SYL G LPGDYG+D GL SDP + E EVI+ R+
Sbjct: 597 GPDRAKWLGPLTGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE------AEVIHARW 650
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FV 159
AMLGA+G + PE+L G +P W++ G I A NY +P + F+
Sbjct: 651 AMLGALGVVTPELLAGNG-VPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFL 709
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+A+MG E R+ G GR+ D YPGGP F+PLGL D +
Sbjct: 710 STLAIMGAVEAYRYG--GGVGDSGREL------------DTLYPGGP-FDPLGLANDPDA 754
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
+ + K+KE+KNGRLAM+A+LG++VQ LVT GP +NL HLADP NN+ +
Sbjct: 755 LAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFS 805
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 120/230 (52%), Gaps = 34/230 (14%)
Query: 52 GADRPLWFASKQSL--SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRY 108
G DR W YL G LPGDYG+D GL +DP + +VI+GR+
Sbjct: 839 GPDRVKWLGGFTGFVPEYLTGELPGDYGWDTAGLGADPAKLARY------RVAQVIHGRW 892
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FV 159
AMLG +G PE + + G +P + WF+ G I NY P + F+
Sbjct: 893 AMLGVLGCWFPECINRWGGVPFGEPV-WFKAGAQIFSEDGLNYLGQPGLIHAQSVVLTFL 951
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+ LMG E R + GS+G G DP YPGGP F+PLGL D ++
Sbjct: 952 STLVLMGAVEAYR-----SAGSVGD---------FGADLDPLYPGGP-FDPLGLADDPEA 996
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+ K+KEVKNGRLAM+AI G+FVQG++TG GP +N +DHL DP NN+
Sbjct: 997 FLELKVKEVKNGRLAMVAIFGFFVQGILTGKGPVENWVDHLTDPFVNNIF 1046
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 119/223 (53%), Gaps = 26/223 (11%)
Query: 52 GADRPLWF---ASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +RP W + YL G GDYGFD GL+ DP+ + + E+ NGR
Sbjct: 361 GPNRPKWLGPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRD------AELQNGR 414
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTLFVLEMALMG 166
+AMLG +G +APE+L +P + WF+TG I G+ +Y A+P + + L
Sbjct: 415 WAMLGVLGCLAPEVLSNVFGVPYPEPV-WFKTGATILNGGSIDYLANPKLIHASNLLLTL 473
Query: 167 FAEHRRF---QDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
E F + W G E LG + D +YPGG +F+PLGL KD + +
Sbjct: 474 VLELVFFFAAETWREAG----------EGPLGKAQDKSYPGG-VFDPLGLSKDPAAFAEA 522
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNN 266
K+KEVKNGRLAMLA+LG FVQ VTG P +NL HLA+P N
Sbjct: 523 KVKEVKNGRLAMLAMLGLFVQAGVTGQSPLENLSAHLANPGVN 565
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 68/112 (60%), Gaps = 15/112 (13%)
Query: 158 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 217
F+ + LMG E R + GS+G G DP YPGGP F+PLGL D
Sbjct: 10 FLSTLVLMGAVEAYR-----SAGSVGD---------FGADLDPLYPGGP-FDPLGLADDP 54
Query: 218 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
++ + K+KEVKNGRLAM+AI G+ VQG++TG GP +N +DHL DP NN+
Sbjct: 55 EAFLELKVKEVKNGRLAMVAIFGFSVQGILTGKGPVENWVDHLTDPFENNLF 106
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DR + + S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 50 GPDRVKYLSPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRW 103
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 AMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 161
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 162 CQVILMGAVEGYRVA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEA 204
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 205 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 123/224 (54%), Gaps = 34/224 (15%)
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
F+ + YL G PGDYG+D GLS DP+ + E E+I+ R+A+LGA+G +
Sbjct: 45 FSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREI------ELIHARWALLGALGIL 98
Query: 118 APEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGF 167
PE+L + AG+ Q WF+ G I AG NY + + +++ LMG
Sbjct: 99 TPELLSQYAGV--QFGEPVWFKAGAQIFAAGGLNYLGNESLIHAQSIIATLAVQVVLMGL 156
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
AE R AN GS G FL D YPGGP F+PLGL D + + K+KE
Sbjct: 157 AEAYR----ANGGSEG---FLD-------DLDTLYPGGP-FDPLGLADDPDTFAELKVKE 201
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
+KNGRLAM + LG+FVQ +VTG GP QNL DHLADP NN S
Sbjct: 202 IKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNNAFAS 245
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 125/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DR L+ S SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 51 GPDRVLYLGPLSGAPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 162
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 163 CQVVLMGAIEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEA 205
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 144/279 (51%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT + SS + + + + + + RK +AAS P G DR L+
Sbjct: 1 MATTTMALSSPAFAGKAVKNVPSSGLFGEARMTMRKTGAKPKAASGSPW-YGPDRVLYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S + SYL G GDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 60 PLSGEPPSYLTGEFAGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 114 FPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R G +G DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 172 EGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKVKEL 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 106/270 (39%), Positives = 140/270 (51%), Gaps = 38/270 (14%)
Query: 12 TSSVETARQILGARSA-QSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYL 68
+ +V LGAR A SP + R + + + G DR + S Q+ SYL
Sbjct: 10 SRAVAGKTPFLGARPAVASPLRDVAAAASNGRISMSNELWYGPDRVKYLGPFSAQTPSYL 69
Query: 69 DGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AG 126
G PGDYG+D GLS DPE F + L EVI+GR+AMLGA+G + PE+L K G
Sbjct: 70 SGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCVFPEVLQKWVG 123
Query: 127 LIPQETALAWFQTGV-IPPAGTYNYWADP------YTLFVL--EMALMGFAEHRRFQDWA 177
+ +E WF+ G I G +Y +P L VL ++ LMG E R
Sbjct: 124 VEFKEPV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGSQVLLMGLVEGFRIN--- 178
Query: 178 NPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLA 237
G + G G+ YPGG F+PLGL D + + K+KE+KNGRLAM +
Sbjct: 179 -----------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 225
Query: 238 ILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ G+FVQ +VTG GP +NL DHL DPV NN
Sbjct: 226 MFGFFVQAIVTGKGPLENLFDHLDDPVANN 255
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 130/240 (54%), Gaps = 42/240 (17%)
Query: 45 STPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
+T PV G+ DR + S + SYL G PGDYG+D GLS DPE F + +
Sbjct: 38 TTKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNR 94
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 95 EL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPS 149
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 150 LIHAQSILAIWATQVVLMGAVEGYRIA--GGP--------------LGEITDPIYPGGS- 192
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 193 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 124/217 (57%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 62 SGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 115
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ +++ LMG E
Sbjct: 116 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEG 173
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL +D ++ + K+KE+KN
Sbjct: 174 YRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKN 216
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLKNLADHIADPVNNN 253
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G I P
Sbjct: 63 SAQTPSYLKGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITP 116
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 117 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEG 175
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G + G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 176 YRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 219
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 220 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 256
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 146/284 (51%), Gaps = 48/284 (16%)
Query: 1 MATQALVSSSLT--SSVETARQILGARSAQSPTGSSRKGSFVVR--AASTP-PVKQGADR 55
MAT AL SS +S+ + + + GS +G +R S P + G DR
Sbjct: 1 MATTALQHSSFAGQTSLNLSNEFI------RKVGSFGEGRITMRRTVKSVPASIWYGPDR 54
Query: 56 PLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
P + S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLG
Sbjct: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLG 108
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMA 163
A+G + PEIL K G+ E WF+ G I G +Y +P ++ ++
Sbjct: 109 ALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVV 166
Query: 164 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
LMGF E R P LG DP YPGG F+PLGL D + +
Sbjct: 167 LMGFVEGYRIG--GGP--------------LGEGLDPLYPGG-AFDPLGLADDPDAFAEL 209
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
K+KE+KNGRLAM ++ G+FVQ +V G GP +NL D LA PV NN
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVPGKGPIENLSDPLAAPVANN 253
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 133/258 (51%), Gaps = 40/258 (15%)
Query: 25 RSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW---FASKQSLSYLDGSLPGDYGFDPL 81
RS+ PT +SR V RAA G DRP + F+ SYL G PGDYG+D
Sbjct: 10 RSSVRPTVASRAARVVPRAAIE---WYGPDRPKFLGPFSEGDVPSYLTGEFPGDYGWDTA 66
Query: 82 GLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG 140
GLS DPE + E E+I+ R+AMLGA+G + PE+L K + A+ WF+ G
Sbjct: 67 GLSADPETFKRYREL------ELIHARWAMLGALGCVTPELLSKYAGVSFGEAV-WFKAG 119
Query: 141 V-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 191
I G NY + + ++ +MG AE R AN G +G
Sbjct: 120 AQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR----ANGGPLGEGL----- 170
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
DP +PGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG G
Sbjct: 171 -------DPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 222
Query: 252 PYQNLLDHLADPVNNNVL 269
P +NL DHLA+P N
Sbjct: 223 PIENLSDHLANPSAVNAF 240
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 133/245 (54%), Gaps = 37/245 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + S+ G+DR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 35 RKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET--- 91
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 92 FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAG--WFKAGSQIFSDGGLDY 146
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R P LG DP Y
Sbjct: 147 LGNPSLVHAQSLLAIWACQVVLMGAVEGYRIA--GGP--------------LGEIVDPLY 190
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
PGG F+PLGL + ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP ++L DH+AD
Sbjct: 191 PGGS-FDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIAD 249
Query: 263 PVNNN 267
PVNNN
Sbjct: 250 PVNNN 254
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 119/212 (56%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 66 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLAR 119
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 120 NGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA- 176
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 177 -GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 220
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 221 FSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 139/277 (50%), Gaps = 52/277 (18%)
Query: 18 ARQILGARSAQSPT---GSSRKGSFV----VRAASTPPVKQGADRPLWFA---------- 60
A + S SPT G ++ SF V + +P G D LW+
Sbjct: 2 ASTFTSSSSVLSPTTFLGQTKASSFNPLRDVVSLGSPKYTMGND--LWYGPDRVKYLGPF 59
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA G I P
Sbjct: 60 SVQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGAFGCITP 113
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 114 EVLQKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEG 172
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G + G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 173 FRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 216
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 122/217 (56%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S ++ SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G++ P
Sbjct: 61 SGEAPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGSVFP 114
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 115 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAVEG 172
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 173 YRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKN 215
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 137/260 (52%), Gaps = 46/260 (17%)
Query: 29 SPTGSSR--KGSFVVR--AASTPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYG 77
SPT S +G +R A PV G+ DR + S + SYL G PGDYG
Sbjct: 21 SPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYG 80
Query: 78 FDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAW 136
+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+ E W
Sbjct: 81 WDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--W 132
Query: 137 FQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYF 187
F+ G I G +Y +P ++ ++ LMG E R P
Sbjct: 133 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA--GGP-------- 182
Query: 188 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +V
Sbjct: 183 ------LGEITDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 235
Query: 248 TGVGPYQNLLDHLADPVNNN 267
TG GP +NL DHLADPVNNN
Sbjct: 236 TGKGPLENLADHLADPVNNN 255
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 130/248 (52%), Gaps = 47/248 (18%)
Query: 41 VRAASTPPVKQGADRPLWFA----------SKQSLSYLDGSLPGDYGFDPLGLS-DPEGT 89
+ AA+ + G D LW+ S Q+ SYL+G PGDYG+D GLS DPE
Sbjct: 35 IAAATNGRITMGND--LWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEA- 91
Query: 90 GGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGT 147
F + L EVI+GR+AMLGA+G + PE+L K G+ +E WF+ G I G
Sbjct: 92 --FARNRAL---EVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPV--WFKAGSQIFSEGG 144
Query: 148 YNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGD 199
+Y +P + ++ LMG E R G + G G+
Sbjct: 145 LDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN--------------GLDGV--GEGN 188
Query: 200 PAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDH 259
YPGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH
Sbjct: 189 DLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDH 248
Query: 260 LADPVNNN 267
L DPV NN
Sbjct: 249 LDDPVANN 256
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 141/279 (50%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA AL SS+ T V S+ G AAS+ G DR +
Sbjct: 1 MAAMAL-SSTFTGKVVPLNAFTELSSSVRSNGRVTMRKSGKPAASSGSPWYGPDRVKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 60 PFSGEPPSYLKGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 114 FPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 172 EGYRIA--GGP--------------LGEITDPIYPGGS-FDPLGLADDPEAFSELKVKEL 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 119/212 (56%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 67 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAR 120
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 121 NGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRVA- 177
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 178 -GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 221
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 222 FSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 119/212 (56%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 66 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSR 119
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 120 NGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA- 176
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 177 -GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 220
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 221 FSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 119/212 (56%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 66 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSR 119
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 120 NGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA- 176
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 177 -GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 220
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 221 FSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G I P
Sbjct: 19 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITP 72
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 73 EVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 131
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 132 FRIN--GLPGV--------------GEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKN 175
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 176 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 212
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 121/217 (55%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 114
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 115 ELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEG 172
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 173 YRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 215
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G I P
Sbjct: 64 SAQTPSYLKGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITP 117
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 118 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 176
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G + G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 177 FRIN--------------GLDGV--GEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKN 220
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 221 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 257
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 132/248 (53%), Gaps = 41/248 (16%)
Query: 36 KGSFVVRAASTPPVKQ----GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEG 88
G +R PV G DR + S ++ SYL G PGDYG+D GLS DPE
Sbjct: 30 NGRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET 89
Query: 89 TGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGT 147
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G
Sbjct: 90 ---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGG 141
Query: 148 YNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGD 199
+Y +P +++ ++ LMG E R G +G D
Sbjct: 142 LDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAG----GPLGEIV------------D 185
Query: 200 PAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDH 259
P YPGG F+PLGL +D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH
Sbjct: 186 PLYPGGS-FDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 244
Query: 260 LADPVNNN 267
LADPVNNN
Sbjct: 245 LADPVNNN 252
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 127/228 (55%), Gaps = 36/228 (15%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR + S +S SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 52 GSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 105
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 163
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R + + LG + D YPGG F+PLGL D ++
Sbjct: 164 TQVILMGAVEGYR---------------VAGNEPLGEAEDLLYPGGS-FDPLGLATDPEA 207
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 120/223 (53%), Gaps = 35/223 (15%)
Query: 63 QSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEI 121
+S SYL G PGDYG+D GLS DPE + E EVI+ R+AMLGA+G + PE+
Sbjct: 45 ESPSYLKGEFPGDYGWDTAGLSADPETFARYREI------EVIHARWAMLGALGCVTPEL 98
Query: 122 LGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRR 172
L K G+ E WF+ G I + NY +P + ++ LMG AE R
Sbjct: 99 LAKNGVSFGEAV--WFKAGAQIFGSDGLNYLGNPSLVHAQSIIATLACQVILMGGAEAYR 156
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 232
+ PG G D YPGGP F+PLGL D + + K KE+KNGR
Sbjct: 157 -ANGEGPGVEGL--------------DSLYPGGP-FDPLGLADDPDTFAELKTKEIKNGR 200
Query: 233 LAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 274
LAM ++ G+FVQ +VTG GP +NL DHLADP VNN + KF
Sbjct: 201 LAMFSMFGFFVQAIVTGKGPIENLSDHLADPGVNNGFAAATKF 243
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G I P
Sbjct: 62 SAQTPSYLKGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITP 115
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 116 EVLEKWLRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEG 174
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G + G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 175 YRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 218
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 127/237 (53%), Gaps = 37/237 (15%)
Query: 43 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLA 99
AAS G DR L+ S + SYL G PGDYG+D GLS DPE F + + L
Sbjct: 10 AASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL- 65
Query: 100 YGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP---- 154
EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y P
Sbjct: 66 --EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPQLIH 121
Query: 155 ----YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNP 210
++ ++ LMG E R P LG DP YPGG F+P
Sbjct: 122 AQSILAIWACQVILMGAIEGYRVA--GGP--------------LGEVTDPIYPGGN-FDP 164
Query: 211 LGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
LGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 165 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVNNN 221
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 104/284 (36%), Positives = 142/284 (50%), Gaps = 51/284 (17%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTP--PVKQGA-----D 54
AT AL SSS A + S + +R G +R T PV G+ D
Sbjct: 4 ATMALSSSSFAGK---------AVNVPSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPD 54
Query: 55 RPLWFA--SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
R + S ++ SYL G PGDYG+D GLS T F + + L EVI+ R+ MLG
Sbjct: 55 RVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPAT--FAKNRKL---EVIHCRWTMLG 109
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMA 163
A+G + PE+ + G+ E WF+ G I G +Y +P ++ ++
Sbjct: 110 ALGCVFPELFARNGVKFGEAV--WFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVV 167
Query: 164 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
LMG E R G +G DP YPGG F+PLGL D ++ +
Sbjct: 168 LMGAVEGYRVAG----GPLGEVI------------DPLYPGGS-FDPLGLADDPEAFAEL 210
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 211 EVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 124/217 (57%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 62 SGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 115
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ +++ LMG E
Sbjct: 116 ELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEG 173
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG + DP YPGG F+PLGL +D ++ + K+KE+KN
Sbjct: 174 YRIAG-GPPGEVV---------------DPLYPGGS-FDPLGLAEDPEAFAELKVKELKN 216
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 253
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 138/276 (50%), Gaps = 50/276 (18%)
Query: 12 TSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA----------S 61
+SSV T LG GSS V + +P G D LW+ S
Sbjct: 8 SSSVLTPTPFLGQTK-----GSSFNPLRDVVSLGSPKYTMGND--LWYGPDRVKYLGPFS 60
Query: 62 KQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA G I PE
Sbjct: 61 VQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGAFGCITPE 114
Query: 121 ILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHR 171
+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 115 VLQKWVRVEFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGF 173
Query: 172 RFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNG 231
R G + G G+ YPGG F+PLGL D + + K+KE+KNG
Sbjct: 174 RIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNG 217
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
RLAM ++ G+FVQ +VTG GP +NLLDH+ DPV NN
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPLENLLDHIDDPVANN 253
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 119/217 (54%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + L EVI+GR+AMLGA+G I P
Sbjct: 61 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 114
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 115 EVLEKWLRVDFKEPI-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 173
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 174 FRIN--GLPGV--------------GDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKN 217
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 254
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 145/284 (51%), Gaps = 53/284 (18%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGS-FVVRAASTPPVKQGA-----DR 55
AT AL S SL G +P+ S G+ V +T PV G+ DR
Sbjct: 4 ATMALSSPSLA----------GKAVKLNPSSSEIMGNGRVSMRKTTKPVPSGSPWYGPDR 53
Query: 56 PLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLG
Sbjct: 54 VKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLG 107
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMA 163
A+G + PE+L + G+ E WF+ G I G +Y +P ++ ++
Sbjct: 108 ALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVV 165
Query: 164 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
LMG E R P LG DP YPGG F+PLGL D ++ +
Sbjct: 166 LMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFAEL 208
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 209 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 252
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 145/284 (51%), Gaps = 53/284 (18%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGS-FVVRAASTPPVKQGA-----DR 55
AT AL S SL G +P+ S G+ V +T PV G+ DR
Sbjct: 4 ATMALSSPSLA----------GKAVKLNPSSSEIMGNGRVSMRKTTKPVPSGSPWYGPDR 53
Query: 56 PLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLG
Sbjct: 54 VKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLG 107
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMA 163
A+G + PE+L + G+ E WF+ G I G +Y +P ++ ++
Sbjct: 108 ALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVV 165
Query: 164 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
LMG E R P LG DP YPGG F+PLGL D ++ +
Sbjct: 166 LMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFAEL 208
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 209 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 252
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 119/212 (56%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 69 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLAR 122
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 123 NGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA- 179
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 180 -GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 223
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 224 FSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 129/240 (53%), Gaps = 37/240 (15%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
V + AS+ G DR + S + SYL G PGDYG+D GLS DPE F +
Sbjct: 37 VTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNR 93
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 94 EL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPS 148
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 149 LVHAQSILAIWATQVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS- 191
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 192 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DR L+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 51 GPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRW 104
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 162
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 163 CQVVLMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEA 205
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+K GRLAML++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 206 FGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNN 253
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 146/293 (49%), Gaps = 47/293 (16%)
Query: 2 ATQALVSSSLTSSVETARQ------ILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADR 55
A +A+ +S L S++ + + + + ++ G +RK SF G DR
Sbjct: 61 AVKAIANSPLGESLQRKMEERKTFAVENSSTFKALAGKARKESF----------WYGEDR 110
Query: 56 PLWFA--SKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
P W S + SYL G LPGDYGFD GL DP + E+++ R+AML
Sbjct: 111 PRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDPVALQKYFN------FEILHARWAMLA 164
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLFVLE 161
+VGA+ PEIL G W++ G G T +Y + + +
Sbjct: 165 SVGALIPEILDLLGAF-HFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQ 223
Query: 162 MALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMK 221
LM E+ R+ G + YL GD YPGG LF+PL L D ++ +
Sbjct: 224 ALLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGALFDPLNLSNDPEAFE 273
Query: 222 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKF 274
+ K+KE+KNGRLAM+A LG++VQ +TG GP QNL+DH++DP +NN+L SL F
Sbjct: 274 ELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLIDHISDPFHNNLLGSLNF 326
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 143/279 (51%), Gaps = 38/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT + SS + + + + + + RK + AS P G DR L+
Sbjct: 1 MATTTMTLSSPAFAGKAVKNMPSSALFGDARMTMRKTGAKPKVASGSPW-YGPDRVLYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S + SYL G GDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 60 PLSGEPPSYLTGEFAGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L + G+ Q WF+ G I G +Y +P ++ ++ LMG
Sbjct: 114 FPELLARNGV--QFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D ++ + K+KE+
Sbjct: 172 EGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEL 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 122/217 (56%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 20 SGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 73
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 74 ELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMGAVEG 131
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 132 YRVA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 174
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 175 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 211
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/242 (40%), Positives = 128/242 (52%), Gaps = 47/242 (19%)
Query: 31 TGSSRKGSFVVRAASTPP--VKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-D 85
G+S+ + R + P + G DRP + S+Q+ SYL G PGDYG+D GLS D
Sbjct: 29 VGASQARITMRRTVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 88
Query: 86 PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA 145
PE F + + L EVI+ R+AMLGA+G + PE+L K G+ E WF+
Sbjct: 89 PET---FAKNREL---EVIHCRWAMLGALGCVFPELLAKTGVKFGEAV--WFKA------ 134
Query: 146 GTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 205
WA ++ LMG E R P LG DP YPGG
Sbjct: 135 ----IWAS-------QVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGG 167
Query: 206 PLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVN 265
F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP
Sbjct: 168 A-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTA 226
Query: 266 NN 267
NN
Sbjct: 227 NN 228
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 133/256 (51%), Gaps = 37/256 (14%)
Query: 25 RSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLG 82
R + S + R S +A + + G DR + S Q+ SYL G PGDYG+D G
Sbjct: 20 RGSGSRKNALRDRSVQCQAKVSMDLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGWDTAG 79
Query: 83 LS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTG 140
LS DPE F + L E+I+GR+AMLGA+G + PE+L K G+ +E WF+ G
Sbjct: 80 LSADPEA---FARNRAL---ELIHGRWAMLGALGCVFPEVLSKWVGVEFKEKV--WFKAG 131
Query: 141 V-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 191
I G +Y +P ++ ++ LMG E R + G
Sbjct: 132 SQIFSDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYRINGLPDVGE---------- 181
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
G YPGG F+PLG D +++ + K+KE+KNGRLAM ++ G+FVQ +VTG G
Sbjct: 182 ------GGDLYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 235
Query: 252 PYQNLLDHLADPVNNN 267
P +NL DHL +PV NN
Sbjct: 236 PLENLFDHLDNPVVNN 251
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 141/279 (50%), Gaps = 37/279 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT + + SS + R + T +R ++ + G DRP +
Sbjct: 1 MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQARITMRRTVRSAPESIWYGPDRPKYLG 60
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+ + SYL G PGDYG+D +S DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 61 PFSEGTPSYLTGEFPGDYGWDTAAVSADPET---FAKNREL---EVIHCRWAMLGALGCV 114
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L K GL E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 115 FPELLAKNGLKFGEAV--WFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLI 172
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R G++G DP PGG F+PLGL D ++ + K+KE+
Sbjct: 173 EGYR----VGGGTLGEGL------------DPLLPGGA-FDPLGLADDPEACAELKVKEI 215
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 119/212 (56%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 69 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAR 122
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 123 NGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVLLMGAVEGYRIAG 180
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
G +G DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 181 ----GPLGEVI------------DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 223
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 224 FSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 119/217 (54%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + L EVI+GR+AMLGA+G I P
Sbjct: 26 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 79
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 80 EVLEKWLRVDFKEPI-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 138
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 139 FRIN--GLPGV--------------GDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKN 182
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 183 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 219
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 118/229 (51%), Gaps = 35/229 (15%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DR W F+ SYL G PGDYG+D GLS DPE + E EVI+ R
Sbjct: 33 GPDRAKWLGPFSDGAVPSYLKGEFPGDYGWDSAGLSADPETFARYREI------EVIHAR 86
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLF 158
+AMLGA+G + PE+L G A WF+ G I NY +P +
Sbjct: 87 WAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPSLIHAQSIVAVL 146
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
+ ++ +MG AE R+ E + SGD YPGG F+PLGL D
Sbjct: 147 LTQLVIMGAAEAYRYAG---------------EGPVETSGDSLYPGGA-FDPLGLADDPD 190
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ + K+KE+KNGRLAM ++ G+FVQ L+TG P +NL DHLADP N
Sbjct: 191 TLAELKVKELKNGRLAMFSMFGFFVQALITGKSPLENLADHLADPSTAN 239
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 125/228 (54%), Gaps = 36/228 (15%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR + S + SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 51 GSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRW 104
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 162
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R E LG + D YPGG F+PLGL D ++
Sbjct: 163 TQVILMGAVEGYRVAG---------------EGPLGEAEDLLYPGGS-FDPLGLATDPEA 206
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 139/277 (50%), Gaps = 52/277 (18%)
Query: 18 ARQILGARSAQSPT---GSSRKGSFV----VRAASTPPVKQGADRPLWFA---------- 60
A + S +PT G ++ SF V + +P G D LW+
Sbjct: 2 ASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGND--LWYGPDRVKYLGPF 59
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA G I P
Sbjct: 60 SVQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGAFGCITP 113
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 114 EVLQKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEG 172
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G + G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 173 FRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 216
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 127/228 (55%), Gaps = 36/228 (15%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR + S +S SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 52 GSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 105
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 163
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R A G +G + D YPGG F+PLGL D ++
Sbjct: 164 TQVILMGAVEGYRV---AGNGPLGE------------AEDLLYPGGS-FDPLGLATDPEA 207
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 125/228 (54%), Gaps = 36/228 (15%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR + S + SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 51 GSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRW 104
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 162
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R E LG + D YPGG F+PLGL D ++
Sbjct: 163 TQVILMGAVEGYRVAG---------------EGPLGEAEDLLYPGGS-FDPLGLAADPEA 206
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 207 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 127/228 (55%), Gaps = 36/228 (15%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR + S +S SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 52 GSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 105
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 106 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 163
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R A G +G + D YPGG F+PLGL D ++
Sbjct: 164 TQVILMGAVEGYRV---AGNGPLGE------------AEDLLYPGGS-FDPLGLATDPEA 207
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 139/259 (53%), Gaps = 40/259 (15%)
Query: 23 GARSAQSPTGSSRKGSFV--VRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGF 78
G + Q T S+R + +R A++ P G DR + S + SYL G PGDYG+
Sbjct: 33 GRITMQDKTTSNRPRTTAGKLRPATSSPW-YGPDRVKYLGPFSGEPPSYLTGEFPGDYGW 91
Query: 79 DPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWF 137
D GLS DPE F + + L EVI+ R+AMLGA+G I PE+L + G+ E WF
Sbjct: 92 DTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCIFPELLARNGVKFGEAV--WF 143
Query: 138 QTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFL 188
+ G I G +Y +P ++ +++ LMG E R P
Sbjct: 144 KAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGAVEGYRIA--GGP--------- 192
Query: 189 GFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT 248
LG DP YPG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VT
Sbjct: 193 -----LGEITDPLYPGNS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 246
Query: 249 GVGPYQNLLDHLADPVNNN 267
G GP +NL DHLADPVNNN
Sbjct: 247 GKGPLENLADHLADPVNNN 265
>gi|413939029|gb|AFW73580.1| hypothetical protein ZEAMMB73_964613 [Zea mays]
Length = 158
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 101/164 (61%), Gaps = 10/164 (6%)
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 169
M G G + ++L +G WF+ G A +++ A+ LF +++ LMGFAE
Sbjct: 1 MAGVAGILFTDLLRVSG---NSDLPVWFEAG----AAKFDF-ANTTALFFVQLFLMGFAE 52
Query: 170 HRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
+R+ D+ NPGS + F+G E L G P YPGGPLFNPLGL KD ++ D KLKE+
Sbjct: 53 TKRYMDFKNPGSQAEEGTFIGLEAALAGQ-QPGYPGGPLFNPLGLAKDIENAHDEKLKEI 111
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
KNGRLAM+A+LG+ VQ VT GP NLL HL+DP N N++ +
Sbjct: 112 KNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTF 155
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S ++ SYL G PGDYG+D LS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 64 SGEAPSYLTGEFPGDYGWDTAELSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 117
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 118 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 175
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 176 YRVA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 218
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G I P
Sbjct: 59 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITP 112
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 113 EVLEKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 171
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 172 FRIN--GLPGV--------------GEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKN 215
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDH+ +PV NN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANN 252
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 126/228 (55%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
GADR L+ S + SYL G GDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 51 GADRVLYLGPLSGEPPSYLTGEFSGDYGWDTAGLSADPET---FAKNREL---EVIHCRW 104
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWG 162
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ MG E R G +G DP YPGG L +PLGL D ++
Sbjct: 163 CQVVFMGAVEGYRVAG----GPLGEVV------------DPLYPGGSL-DPLGLADDPEA 205
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAML++ G+FVQ +VTG GP +N+ DHLADPVNNN
Sbjct: 206 FAELKVKEIKNGRLAMLSMFGFFVQAIVTGKGPLENITDHLADPVNNN 253
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 139/284 (48%), Gaps = 50/284 (17%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ + A ++S Q+LG + G + +R A+T V A W+
Sbjct: 3 IGSCAFAGGQISSLKPHTNQLLGVGA-----GVHGEARVTMRKATTKKVSVSASTSPWYG 57
Query: 61 SKQSL----------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
+ L SYL G PGDYG+D GLS DPE F + + L EVI+ R+A
Sbjct: 58 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWA 111
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 169
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGXVTDPIYPGGS-FDPLGLADDPDAF 212
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 264
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 120/217 (55%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G I P
Sbjct: 61 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITP 114
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 115 EVLEKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEG 173
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 174 FRIN--GLPGV--------------GEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKN 217
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDH+ +PV NN
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANN 254
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 125/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DR + S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 53 GTDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRW 106
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 107 AMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 164
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 165 SQVILMGAVEGYRIGG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEA 207
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 208 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 132/244 (54%), Gaps = 40/244 (16%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGT 89
S+ K SF A+++P G DR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 41 SAAKKSF---ASASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET- 96
Query: 90 GGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTY 148
F + + L EVI+ R+AMLGA+G + PE+L K G+ E WF+ G I G
Sbjct: 97 --FAKNREL---EVIHSRWAMLGALGCVFPELLAKNGVKFGEAV--WFKAGAQIFSEGGL 149
Query: 149 NYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
+Y +P ++ ++ LMG E R P LG DP
Sbjct: 150 DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA--GGP--------------LGEVTDP 193
Query: 201 AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
YPGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL
Sbjct: 194 IYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 252
Query: 261 ADPV 264
ADPV
Sbjct: 253 ADPV 256
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 139/284 (48%), Gaps = 50/284 (17%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ + A ++S Q+LG + G + +R A+T V A W+
Sbjct: 3 IGSCAFAGGQISSLKPHTNQLLGVGA-----GVHGEARVTMRKATTKKVSASASTSPWYG 57
Query: 61 SKQSL----------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
+ L SYL G PGDYG+D GLS DPE F + + L EVI+ R+A
Sbjct: 58 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWA 111
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 169
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 212
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 264
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 119/212 (56%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 64 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSR 117
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 118 NGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 175
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
G +G DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 176 ----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 218
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 219 FSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 133/256 (51%), Gaps = 37/256 (14%)
Query: 25 RSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLG 82
R + S + R S +A + + G DR + S Q+ SYL G PGDYG+D G
Sbjct: 20 RGSGSRKNALRGRSVQCQAKVSMDLWYGPDRVKFLGPFSAQTPSYLKGEFPGDYGWDTAG 79
Query: 83 LS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTG 140
LS DPE F + L E+I+GR+AMLGA+G + PE+L K G+ +E WF+ G
Sbjct: 80 LSADPEA---FARNRAL---ELIHGRWAMLGALGCVFPEVLSKWVGVEFKEKV--WFKAG 131
Query: 141 V-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 191
I G +Y +P ++ ++ LMG E R + G
Sbjct: 132 SQIFSDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYRINGLPDVGE---------- 181
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
G YPGG F+PLG D +++ + K+KE+KNGRLAM ++ G+FVQ +VTG G
Sbjct: 182 ------GGDLYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 235
Query: 252 PYQNLLDHLADPVNNN 267
P +NL DHL +PV NN
Sbjct: 236 PLENLFDHLDNPVVNN 251
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 130/240 (54%), Gaps = 37/240 (15%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
V + AS+ G DR + S + SYL G PGDYG+D GLS DPE F +
Sbjct: 36 VTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNR 92
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G +I G +Y +P
Sbjct: 93 EL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSLIFSEGGLDYLGNPS 147
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 148 LIHAQSILAIWATQVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS- 190
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVN+N
Sbjct: 191 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNSN 250
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 140/284 (49%), Gaps = 50/284 (17%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ + A ++S Q+LG + G + ++R A+T V A W+
Sbjct: 3 IGSCAFAGGQISSLKPHTNQLLGVGA-----GVHGEARVMMRKATTKKVSVSASTSPWYG 57
Query: 61 SKQSL----------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
+ L SYL G PGDYG+D GLS DPE F + + L EVI+ R+A
Sbjct: 58 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWA 111
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 169
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 212
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 264
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 119/217 (54%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G I P
Sbjct: 65 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITP 118
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 119 EVLEKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEG 177
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPG F+PLGL D + + K+KE+KN
Sbjct: 178 FRIN--GLPGV--------------GEGNNLYPGDQYFDPLGLADDPATFAELKVKEIKN 221
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL DPV NN
Sbjct: 222 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 258
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 119/212 (56%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 65 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSR 118
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 119 NGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA- 175
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 176 -GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 219
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 220 FSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/279 (36%), Positives = 142/279 (50%), Gaps = 40/279 (14%)
Query: 1 MATQALVSSSLTSSVETARQILGARSA---QSPTGSSRKGSFVVRAASTPPVKQGADRPL 57
+ + A L+S Q+LG + +S + + A+++P G DR L
Sbjct: 3 IGSCAFAGGQLSSLKPHTNQLLGVGAGVHGESRVTMRKSATKKSVASASPSPWYGPDRVL 62
Query: 58 WFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+
Sbjct: 63 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGAL 116
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALM 165
G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LM
Sbjct: 117 GCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILM 174
Query: 166 GFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKL 225
G E R P LG DP YPGG F+PLGL D + + K+
Sbjct: 175 GAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAFAELKV 217
Query: 226 KEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 264
KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 218 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 122/218 (55%), Gaps = 35/218 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 69 SGESPSYLTGEYPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 122
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L K G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 123 ELLSKNGIKFGEAV--WFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEG 180
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL +D ++ + K+KE+KN
Sbjct: 181 YRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLAEDPEAFAELKVKELKN 223
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
GRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 224 GRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVANNA 261
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 122/218 (55%), Gaps = 35/218 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 60 SGESPSYLTGEYPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 113
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L K G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 114 ELLSKNGIKFGEAV--WFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEG 171
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL +D ++ + K+KE+KN
Sbjct: 172 YRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLAEDPEAFAELKVKELKN 214
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
GRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 215 GRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVANNA 252
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 135/253 (53%), Gaps = 45/253 (17%)
Query: 32 GSSRKGSFVVRAASTPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS 84
G+SR +R ++T V G+ DR + S + SYL G PGDYG+D GLS
Sbjct: 29 GNSR---VTMRKSATKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLS 85
Query: 85 -DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-I 142
DPE F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I
Sbjct: 86 ADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQI 137
Query: 143 PPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYL 194
G +Y +P ++ ++ LMG E R P L
Sbjct: 138 FSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIA--GGP--------------L 181
Query: 195 GGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 254
G DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +
Sbjct: 182 GEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 255 NLLDHLADPVNNN 267
NL DHL DPVNNN
Sbjct: 241 NLADHLTDPVNNN 253
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 145/280 (51%), Gaps = 44/280 (15%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-----DRPLWF 59
A + +L+S T + + + +A G+ R +R AS P G+ DR +
Sbjct: 2 AASTMALSSPALTGKAVKLSPAASEVFGTGR---ITMRKASKPTGPSGSPWYGSDRVKYL 58
Query: 60 A--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
S + SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G
Sbjct: 59 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGC 112
Query: 117 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGF 167
+ PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 113 VFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGA 170
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R + LG + D YPGG F+PLGL D ++ + K+KE
Sbjct: 171 VEGYRVAG---------------DGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKE 214
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 215 LKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 122/224 (54%), Gaps = 34/224 (15%)
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
F+ + YL G PGDYG+D GLS DP+ + E E+I+ R+A+LGA+G +
Sbjct: 45 FSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREI------ELIHARWALLGALGIL 98
Query: 118 APEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGF 167
PE+L + AG+ Q WF+ G I G NY + + +++ LMG
Sbjct: 99 TPELLSQYAGV--QFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGL 156
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
AE R AN GS G FL D YPGGP F+PLGL D + + K+KE
Sbjct: 157 AEAYR----ANGGSEG---FLD-------DLDTLYPGGP-FDPLGLADDPDTFAELKVKE 201
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
+KNGRLAM + LG+FVQ +VTG GP QNL DHLADP NN S
Sbjct: 202 IKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNNAFAS 245
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 60 SGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 113
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 114 ELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPGLVHAQSILAIWACQVILMGAVEG 171
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G +G DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 172 YRIGG----GPLGEVI------------DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 214
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 215 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 127/228 (55%), Gaps = 36/228 (15%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR + S +S SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 34 GSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 87
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 88 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 145
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R A G +G + D YPGG F+PLGL D ++
Sbjct: 146 TQVILMGAVEGYRV---AGNGPLGE------------AEDLLYPGGS-FDPLGLATDPEA 189
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 190 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 237
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 124/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 102
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 103 AMLGALGCVFPEILSKNGIKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 160
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+++ LMGF E R P G D YPGG F+PLGL D +
Sbjct: 161 VQVVLMGFIEGYRVG--GGPLDEGL--------------DIIYPGGA-FDPLGLADDPDT 203
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL D L DP NNN
Sbjct: 204 AAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLFDQLRDPGNNN 251
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 140/271 (51%), Gaps = 44/271 (16%)
Query: 9 SSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLS 66
++L S E +R++ G +R RA++ + G DRP + S+Q+ S
Sbjct: 17 TALKSPNELSRKV-------GNLGEARTVMRRTRASTPDSIWYGPDRPKFLGPFSEQTPS 69
Query: 67 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125
YL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L K
Sbjct: 70 YLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVTPELLAKN 123
Query: 126 GLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDW 176
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 124 GIKFGEAV--WFKAGSQIFKEGGLDYLGNPNLVHAQSILAIWASQVILMGAVEGYRVG-- 179
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
P LG D YPGG F+PLGL D + + K+KE+KNGRLAM
Sbjct: 180 GGP--------------LGEGLDKIYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMF 224
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+F Q +VTG GP +NLLDHL +P NN
Sbjct: 225 SMFGFFTQAIVTGKGPIENLLDHLDNPTVNN 255
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 141/286 (49%), Gaps = 35/286 (12%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFAS 61
A +A+ +S L S++ RQ+ + S +S K + A G +RP W
Sbjct: 69 AVKAIANSPLGGSLQ--RQL--EKKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGP 124
Query: 62 --KQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
YL G LPGDYGFD GLS DP F E+++ R+AML ++GA+
Sbjct: 125 LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFN------FEILHARWAMLASLGALV 178
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLFVLEMALMGF 167
PEIL G T W++ G G T +Y P + + + LM
Sbjct: 179 PEILDIFGAF-HFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVG 237
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E+ R+ G + YL GD YPGG LF+PL L KD + ++ K+KE
Sbjct: 238 PEYARY--------CGIEALEPLGIYL--PGDINYPGGVLFDPLNLSKDAAAFEELKVKE 287
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
+KNGRLAM+A LG++ Q +TG GP QNLLDH+ADP +NN L+ L
Sbjct: 288 IKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLN 333
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 145/280 (51%), Gaps = 44/280 (15%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-----DRPLWF 59
A + +L+S T + + + +A G+ R +R AS P G+ DR +
Sbjct: 2 AASTMALSSPALTGKAVKLSPAASEVFGTGR---ITMRKASKPTGPSGSPWYGSDRVKYL 58
Query: 60 A--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
S + SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G
Sbjct: 59 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGC 112
Query: 117 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGF 167
+ PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 113 VFPELLARNGVEFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGA 170
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R + LG + D YPGG F+PLGL D ++ + K+KE
Sbjct: 171 VEGYRVAG---------------DGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKE 214
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 215 LKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S ++ SYL G GDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 63 SGEAPSYLTGEFAGDYGWDTAGLSADPET---FAKNREL---EVIHARWAMLGALGCVFP 116
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 117 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEG 174
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G +G DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 175 YRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 217
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 29 SGEAPSYLSGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 82
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 83 ELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG 140
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 141 YRIA--GGP--------------LGEVEDPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 183
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FV +VTG GP +NL DHLADPVNNN
Sbjct: 184 GRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNN 220
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 123/214 (57%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GLS PE K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 106 EYLNGEVPGDYGYDPFGLSKKPENFD-----KYQAY-ELIHARWAMLGAAGFIMPEAFNK 159
Query: 125 AGLIPQETALAWFQTG-VIPPAGTYNYW--ADPYTLF---VLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG ++ GT +Y+ + P L V E+ L+G AE+ R +
Sbjct: 160 FGAYCGPEAV-WFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNG-- 216
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L FE D +PGGP F+PLGL KD K+KE+KNGRLAM ++
Sbjct: 217 ---------LDFE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFSM 259
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+FVQ VTG GP +NL HL+DP NN+LT L
Sbjct: 260 LGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVL 293
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 123/214 (57%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GLS PE K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 106 EYLNGEVPGDYGYDPFGLSKKPENFD-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 159
Query: 125 AGLIPQETALAWFQTG-VIPPAGTYNYW--ADPYTLF---VLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG ++ GT +Y+ + P L V E+ L+G AE+ R +
Sbjct: 160 FGAYCGPEAV-WFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNG-- 216
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L FE D +PGGP F+PLGL KD K+KE+KNGRLAM ++
Sbjct: 217 ---------LDFE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFSM 259
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+FVQ VTG GP +NL HL+DP NN+LT L
Sbjct: 260 LGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVL 293
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 144/280 (51%), Gaps = 43/280 (15%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-----DRPLWF 59
A + +L+SS + + + S+ TG+ K + A PV G+ DR +
Sbjct: 2 AAATMALSSSTFAGKVVKLSPSSSEITGNG-KATMRKTATKAKPVSSGSPWYGPDRVKYL 60
Query: 60 A--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G
Sbjct: 61 GPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGC 114
Query: 117 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGF 167
+ PE+ + G+ E W + G I G +Y +P ++ ++ LMG
Sbjct: 115 VFPELFARNGVKFGEAV--WLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGA 172
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R P LG DP YPGG F+PLGL +D ++ + K+KE
Sbjct: 173 VEGYRVA--GGP--------------LGVVVDPLYPGGS-FDPLGLAEDPEAFAELKVKE 215
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+F+Q +VTG GP +NL DHL DPVNNN
Sbjct: 216 TKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNN 255
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL G +PGDYG+DP GLS PE K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 95 EYLTGEVPGDYGYDPFGLSKKPEDFA-----KYQAY-ELIHARWAMLGAAGFIVPEAFNK 148
Query: 125 AGLIPQETALAWFQTG-VIPPAGTYNYWAD--PYTLFVL---EMALMGFAEHRRFQDWAN 178
G A+ WF+TG ++ GT NY+ + P L V E+ L+G AE+ R +
Sbjct: 149 FGANCGPEAV-WFKTGALLLDGGTLNYFGNSIPINLVVAVIAEVVLLGGAEYYRIING-- 205
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL KD K+KE+KNGRLAM A+
Sbjct: 206 ---------LDLE-------DKLHPGGP-FDPLGLAKDPDQAAILKVKEIKNGRLAMFAM 248
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG++ Q VTG GP +NL HL+DP NN+LT L
Sbjct: 249 LGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVL 282
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 136/260 (52%), Gaps = 46/260 (17%)
Query: 29 SPTGSSR---KGSFVVRAASTPPVK------QGADRPLWFA--SKQSLSYLDGSLPGDYG 77
SP+ +S G +R A+T V G DR + S + SYL G PGDYG
Sbjct: 22 SPSSASELMGNGRVSMRKAATKKVAPSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYG 81
Query: 78 FDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAW 136
+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+ E W
Sbjct: 82 WDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--W 133
Query: 137 FQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYF 187
F+ G I G +Y +P ++ ++ LMG E R G +G
Sbjct: 134 FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVV- 188
Query: 188 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +V
Sbjct: 189 -----------DPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 236
Query: 248 TGVGPYQNLLDHLADPVNNN 267
TG GP +NL DHL DPVNNN
Sbjct: 237 TGKGPLENLADHLFDPVNNN 256
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 127/228 (55%), Gaps = 36/228 (15%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR + S +S SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 18 GSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 71
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 72 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 129
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R A G +G + D YPGG F+PLGL D ++
Sbjct: 130 TQVILMGAVEGYRV---AGNGPLGE------------AEDLLYPGGS-FDPLGLATDPEA 173
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 174 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 221
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 127/234 (54%), Gaps = 37/234 (15%)
Query: 43 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLA 99
A+++P G DR L+ S + SYL G PGDYG+D GLS DPE F + + L
Sbjct: 48 ASASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL- 103
Query: 100 YGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP---- 154
EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 104 --EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIH 159
Query: 155 ----YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNP 210
++ ++ LMG E R P LG DP YPGG F+P
Sbjct: 160 AQSILAIWACQVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDP 202
Query: 211 LGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 264
LGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 203 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 118/212 (55%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 66 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLAR 119
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 120 NGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA- 176
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 177 -GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 220
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 221 FSMFGFFVQAIVTGKGPIENLADHLADPVTNN 252
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 128/240 (53%), Gaps = 37/240 (15%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
V + AS+ G DR + S + SYL G PGDYG+D GLS DPE F
Sbjct: 37 VTKQASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNP 93
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 94 EL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPS 148
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 149 LVHAQSILAIWATQVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS- 191
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 192 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 127/221 (57%), Gaps = 27/221 (12%)
Query: 66 SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125
+YL+G+L GDYG+DPLGL T +E K+ AY E+I+ R+AML A G I PE L
Sbjct: 114 TYLNGTLAGDYGYDPLGLGKDTAT---VE-KYRAY-ELIHARWAMLAAAGIIIPEGLQAN 168
Query: 126 GLIPQETALAWFQTGV-IPPAGTYNYWADPYTLF----------VLEMALMGFAEHRRFQ 174
G + WF+TG + GT NY+A P+ + V+E+AL+G E R
Sbjct: 169 GAAIK--GGTWFETGAEMLNGGTLNYFAVPWGIINNPLPLFLVVVIEVALLGAVERYRQS 226
Query: 175 DWANPG---SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNG 231
PG +G+ F+ + D YPGGP F+PLGL D ++ + K+KE+KNG
Sbjct: 227 GEGPPGYSPGVGK-----FDSSIFSGLDNLYPGGP-FDPLGLADDPETFAELKVKEIKNG 280
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
RLA++++LG+ VQ VTG GPY N H+ADP N+LT +
Sbjct: 281 RLALISVLGFAVQSYVTGEGPYANWSKHVADPFGYNLLTII 321
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 118/217 (54%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G GDYG+D GLS DPE F + L EVI+GR+AMLGA+G I P
Sbjct: 62 SAQTPSYLTGEFAGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 115
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 116 EVLEKWVRVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEG 174
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGG F+PLGL D + + ++KE+KN
Sbjct: 175 YRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELRVKEIKN 218
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 128/239 (53%), Gaps = 30/239 (12%)
Query: 52 GADRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVIN 105
G DR L+ S + YL+G L GDYG+DPLGL DPE + E E+++
Sbjct: 54 GPDRKLFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRE------NELLH 107
Query: 106 GRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP---------- 154
R+AML A G + PE L G WF+TG + GT NY+A P
Sbjct: 108 ARWAMLAAAGILIPEGLQANGA--NIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPL 165
Query: 155 YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYPGGPLFNPLGL 213
+ + +E+ LMG E R G G +G F+ + DP YPGGP F+PLGL
Sbjct: 166 FAVIAVEVGLMGAVEFYRRN---GTGPAGYSPGIGKFDSSVFDGLDPLYPGGP-FDPLGL 221
Query: 214 GKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
D + +++ K+KE+KNGRLAM+++LG+ VQ VTG GPY N H+ADP N+LT L
Sbjct: 222 ADDPEVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVL 280
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 134/259 (51%), Gaps = 41/259 (15%)
Query: 25 RSAQSP-TGSSRKGSFVVRAASTPPVKQGADRPLW---FASKQSLSYLDGSLPGDYGFDP 80
RS+ P T SSR V RAA G DRP + F+ + +YL G PGDYG+D
Sbjct: 10 RSSVRPATASSRAARVVPRAAIE---WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDT 66
Query: 81 LGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQT 139
GLS DPE + E E+I+ R+AMLGA+G + PE+L K + A+ WF+
Sbjct: 67 AGLSADPETFKRYREL------ELIHARWAMLGALGCVTPELLSKYAGVSFGEAV-WFKA 119
Query: 140 GV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF 190
G I G NY + + ++ +MG AE R AN G +G
Sbjct: 120 GAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR----ANGGPLGEGL---- 171
Query: 191 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
DP +PGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG
Sbjct: 172 --------DPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 222
Query: 251 GPYQNLLDHLADPVNNNVL 269
GP +NL DHLA+P N
Sbjct: 223 GPIENLSDHLANPSAVNAF 241
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 132/258 (51%), Gaps = 42/258 (16%)
Query: 29 SPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSL----------SYLDGSLPGDYGF 78
SP S GS V T +G W+ S++ SYL G PGDYG+
Sbjct: 21 SPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSERVKYLGPFSGEPPSYLTGQFPGDYGW 80
Query: 79 DPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQ 138
D GLS T F+ + L EVI+ R+AMLGA+G + PE+L + G+ E WF+
Sbjct: 81 DTAGLSAVPET--FVRNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFK 133
Query: 139 TGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
G I G +Y +P ++ ++ LMG E R PG
Sbjct: 134 AGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV-----PG--------- 179
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
+ LG + D YPGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG
Sbjct: 180 -DGPLGEAEDLLYPGGS-FDPLGLATDPVAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 250 VGPYQNLLDHLADPVNNN 267
GP +NL DHLADPVNNN
Sbjct: 238 KGPLENLADHLADPVNNN 255
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 124/214 (57%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GLS PE K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 81 EYLNGEVPGDYGYDPFGLSKKPENFD-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 134
Query: 125 AGLIPQETALAWFQTG-VIPPAGTYNYW--ADPYTLF---VLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG ++ GT +Y+ + P L V E+ L+G AE+ R A
Sbjct: 135 FGAYCGPEAV-WFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGGAEYYR----AT 189
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
G L FE D +PGGP F+PLGL KD K+KE+KNGRLAM ++
Sbjct: 190 NG-------LDFE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFSM 234
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+FVQ VTG GP +NL HL+DP NN+LT L
Sbjct: 235 LGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVL 268
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 30 SGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 83
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 84 ELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG 141
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G +G DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 142 YRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKVKELKN 184
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 185 GRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 221
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 121/228 (53%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+Q+ SYL G PGDYG++ G+S DPE F + L EVI+ R+
Sbjct: 15 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWETAGVSADPET---FARNREL---EVIHSRW 68
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 69 AMLGALGCVFPEILAKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 126
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMGF E + D YPGG F PLGL D +
Sbjct: 127 CQVVLMGFVEGYGVGGGPLGEGL----------------DKVYPGGA-FEPLGLADDPDT 169
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 170 AAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 217
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 108/285 (37%), Positives = 145/285 (50%), Gaps = 49/285 (17%)
Query: 2 ATQALVSSSLTSSV----ETARQILGA-----RSAQSPTGSSRKGSFVVRAASTPPVKQG 52
+T AL S +LT A ++ G R A PTG S + G
Sbjct: 4 STMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGPSGSPWY------------G 51
Query: 53 ADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
+DR + S + SYL G PGDYG+D GLS DPE F + L EVI+ R+A
Sbjct: 52 SDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWA 105
Query: 110 MLGAVGAIAPEILGKAGLIPQETALA--WF---QTGVIPPAGTYNYWADPYTLFVLE-MA 163
MLGA+G + PE+L + G+ E WF Q I P WA P + E +
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWVQGWFTDLQRRRIGPT-----WATPSLVHAQEHFS 160
Query: 164 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDF 223
+G++ + GS+ R + LG + D YPGG F+PLGL D ++ +
Sbjct: 161 HLGYSSYPH-------GSLLRATRVPGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAEL 212
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 213 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNA 257
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 143/285 (50%), Gaps = 53/285 (18%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW---FAS 61
AL+S+S S R+ SP KG V RA+ G DRP + ++
Sbjct: 4 ALLSNSFVVSAR--------RTVSSP---KSKGKQVTRASIE---WYGPDRPKFLGPYSD 49
Query: 62 KQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
+ SYL G PGDYG+D GLS DPE + E EVI+ R+A+LG +G + PE
Sbjct: 50 GATPSYLKGEYPGDYGWDTAGLSADPETFSRYREI------EVIHSRWALLGTLGIVTPE 103
Query: 121 ILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHR 171
+L K G + + A+ WF+ G I A NY +P + ++ L+G AE
Sbjct: 104 LLEKYGGVKFQEAV-WFKAGAQIFSADGLNYLGNPSLVHAQSIIATVATQVILLGLAEGY 162
Query: 172 RFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNG 231
R N G G DP YPGG F+PLGL D + + K+KE+KNG
Sbjct: 163 R----VNGGPAGEIT------------DPLYPGGA-FDPLGLADDPDTFAELKVKEIKNG 205
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADP--VNNNVLTSLKF 274
RLA A LG+FVQ +VTG GP QNL DHLADP VN + + KF
Sbjct: 206 RLAQFAALGFFVQAIVTGKGPIQNLEDHLADPFAVNGFTIGAQKF 250
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 121/214 (56%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GLS PE K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 106 EYLNGEVPGDYGYDPFGLSKKPENFD-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 159
Query: 125 AGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL-----FVLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG ++ GT +Y+ + V E+ L+G AE+ R +
Sbjct: 160 FGAYCGPEAV-WFKTGALLLDGGTLSYFGASIHINLIAAVVAEVILVGGAEYYRATNG-- 216
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L FE D +PGGP F+PLGL KD K+KE+KNGRLAM ++
Sbjct: 217 ---------LDFE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFSM 259
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+FVQ VTG GP +NL HL+DP NN+LT L
Sbjct: 260 LGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVL 293
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 132/244 (54%), Gaps = 40/244 (16%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGT 89
S+ K SF A+++P G DR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 41 SAAKKSF---ASASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET- 96
Query: 90 GGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTY 148
F + + L EVI+ R+AMLGA+G + PE+L K G+ E WF+ G I G
Sbjct: 97 --FAKNREL---EVIHSRWAMLGALGCVFPELLAKNGVKFGEAV--WFKAGAQIFSEGGL 149
Query: 149 NYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
++ +P ++ ++ LMG E R P LG DP
Sbjct: 150 DHLGNPSLIHAQSILAIWACQVILMGAVEGYRIA--GGP--------------LGEVTDP 193
Query: 201 AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
YPGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL
Sbjct: 194 IYPGGS-FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 252
Query: 261 ADPV 264
ADPV
Sbjct: 253 ADPV 256
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 118/212 (55%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 63 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLAR 116
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 117 NGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVLLMGAVEGYRIA- 173
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 174 -GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 217
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 218 FSMFGFFVQAIVTGKGPIENLADHLADPVTNN 249
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 119/212 (56%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DP+ F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 64 SYLTGEFPGDYGWDTAGLSADPKT---FAKNREL---EVIHSRWAMLGALGCVFPELLSR 117
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 118 NGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG 175
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
G +G DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 176 ----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 218
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 219 FSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 148/287 (51%), Gaps = 35/287 (12%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF-- 59
A +A+ +S L S++ + + Q S K + + A G +RP W
Sbjct: 72 AVKAIANSPLGESLQRRLEERKKLAVQQ----SSKFKALAQKARKESFWYGEERPRWLGP 127
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S Q +YL G LPGDYGFD GL+ DP + E+++ R+AML A+GA+
Sbjct: 128 ISYQYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFN------FEILHARWAMLAALGALI 181
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLF-----VLEMA-----LMGF 167
PE+L +G W++ G G T +Y P F VL +A LM
Sbjct: 182 PEVLDLSGAF-HFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVIAFCQAILMVG 240
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E+ R+ G + YL GD YPGG LF+PL L KD S ++ K+KE
Sbjct: 241 PEYARY--------CGIEALEPLGIYL--PGDINYPGGILFDPLNLSKDPVSFEELKVKE 290
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKF 274
+KNGRLAM+A LG+++Q +TG GP +NL++H++DP++NN+ ++LK
Sbjct: 291 IKNGRLAMVAWLGFYIQAALTGKGPVENLVEHISDPLHNNLFSTLKL 337
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 142/286 (49%), Gaps = 35/286 (12%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFAS 61
A +A+ +S L S++ RQ+ + S +S K + A G +RP W
Sbjct: 69 AVKAIANSPLGGSLQ--RQL--EKKKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGP 124
Query: 62 --KQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
YL G LPGDYGFD GLS DP F E+++ R+AML ++GA+
Sbjct: 125 LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFN------FEILHARWAMLASLGALV 178
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLFVLEMALMGF 167
PEIL G T W++ G G T +Y P + + + LM
Sbjct: 179 PEILDIFGAF-HFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVG 237
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E+ R+ G + YL GD YPGG LF+PL L KD ++ ++ K+KE
Sbjct: 238 PEYARY--------CGIEALEPLGIYL--PGDINYPGGVLFDPLNLSKDAEAFEELKVKE 287
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
+KNGRLAM+A LG++ Q +TG GP QNLL+H+ADP +NN L+ L
Sbjct: 288 IKNGRLAMVAWLGFYSQAALTGKGPVQNLLNHIADPFHNNFLSLLN 333
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 100/260 (38%), Positives = 135/260 (51%), Gaps = 41/260 (15%)
Query: 24 ARSAQSP-TGSSRKGSFVVRAASTPPVKQGADRPLW---FASKQSLSYLDGSLPGDYGFD 79
ARS+ P T +SR V RAA G DRP + F+ + +YL G PGDYG+D
Sbjct: 9 ARSSVRPVTVASRAARVVPRAAIE---WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWD 65
Query: 80 PLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQ 138
GLS DPE + E E+I+ R+AMLGA+G + PE+L K + A+ WF+
Sbjct: 66 TAGLSADPETFKRYREL------ELIHARWAMLGALGCVTPELLSKYAGVSFGEAV-WFK 118
Query: 139 TGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
G I G NY + + ++ +MG AE R AN G +G
Sbjct: 119 AGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR----ANGGPLGEGL--- 171
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
DP +PGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG
Sbjct: 172 ---------DPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 221
Query: 250 VGPYQNLLDHLADPVNNNVL 269
GP +NL DHLA+P N
Sbjct: 222 KGPIENLSDHLANPSAVNAF 241
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 135/278 (48%), Gaps = 48/278 (17%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTP-PVKQGADRPLWFA--S 61
AL SSL + + AR P ASTP G +RPL+ +
Sbjct: 4 ALAKSSLAPRCLASTVKVEARRTVKPASK----------ASTPDSFWYGPERPLFLGAFT 53
Query: 62 KQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPE 120
+ SYL G PGDYG+D GLS DPE + E E+I+ R+AMLGA+G I PE
Sbjct: 54 GEPPSYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWAMLGALGCITPE 107
Query: 121 ILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHR 171
+L K+G Q WF+ G I G +Y +P + +++ LMG E
Sbjct: 108 LLAKSGT--QFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGY 165
Query: 172 RFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNG 231
R N G G DP YPG F+PLGL D + + K+KE+KNG
Sbjct: 166 R----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTFAELKVKEIKNG 208
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
RLAM ++ G+FVQ +VTG GP QNL DHL++P NN
Sbjct: 209 RLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAF 246
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 121/214 (56%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL G +PGDYG+DP GLS PE K+ A+ E+I+ R+AMLGA G I PE K
Sbjct: 90 EYLTGEVPGDYGYDPFGLSKKPEDFA-----KYQAF-ELIHARWAMLGAAGFIIPEAFNK 143
Query: 125 AGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL-FVL----EMALMGFAEHRRFQDWAN 178
G A+ WF+TG ++ GT NY+ P + F+L E+ L+G AE+ R +
Sbjct: 144 YGANCGPEAV-WFKTGALLLDGGTLNYFGKPIPINFILAVVAEIVLVGGAEYYRIING-- 200
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL KD K+KE+KNGRLAM A+
Sbjct: 201 ---------LDLE-------DKLHPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAMFAM 243
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG++ Q VTG GP +NL HL+DP NN+LT +
Sbjct: 244 LGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 277
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 63 SGEAPSYLTGEFPGDYGWDTAGLSADPET---FSKNREL---EVIHCRWAMLGALGCVFP 116
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 117 ELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG 174
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 175 YRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKN 217
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANN 254
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 133/247 (53%), Gaps = 37/247 (14%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGT 89
S RK + + A++ G DR + S ++ SYL G GDYG+D GLS DPE
Sbjct: 2 SMRKTAAKPKPAASGSPWYGPDRVKYLGPFSGEAPSYLTGEFAGDYGWDTAGLSADPET- 60
Query: 90 GGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTY 148
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G
Sbjct: 61 --FAKNREL---EVIHARWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGL 113
Query: 149 NYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
+Y +P ++ ++ LMG E R P LG DP
Sbjct: 114 DYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA--GGP--------------LGEVVDP 157
Query: 201 AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL
Sbjct: 158 LYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 216
Query: 261 ADPVNNN 267
ADPVNNN
Sbjct: 217 ADPVNNN 223
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 126/228 (55%), Gaps = 36/228 (15%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR + S + SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 50 GSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 103
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 104 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 161
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R + + LG + D YPGG F+PLGL D ++
Sbjct: 162 TQVILMGAVEGYR---------------VAGDGPLGEAEDLLYPGGS-FDPLGLATDPEA 205
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 132/248 (53%), Gaps = 41/248 (16%)
Query: 37 GSFVVRAASTPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEG 88
G +R AS P G+ DR + S + SYL G PGDYG+D GLS DPE
Sbjct: 31 GRVTMRKASKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 89 TGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGT 147
F + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G
Sbjct: 91 ---FARNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGG 142
Query: 148 YNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGD 199
+Y +P ++ ++ LMG E R A G +G + D
Sbjct: 143 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV---AGNGPLGE------------AED 187
Query: 200 PAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDH 259
YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH
Sbjct: 188 LLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLSDH 246
Query: 260 LADPVNNN 267
LADPVNNN
Sbjct: 247 LADPVNNN 254
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 131/244 (53%), Gaps = 40/244 (16%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGT 89
S+ K S V +++P G DR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 41 SATKKSVV---SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET- 96
Query: 90 GGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTY 148
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G
Sbjct: 97 --FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGL 149
Query: 149 NYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
+Y +P ++ ++ LMG E R P LG DP
Sbjct: 150 DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA--GGP--------------LGEVTDP 193
Query: 201 AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
YPGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL
Sbjct: 194 IYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 252
Query: 261 ADPV 264
ADPV
Sbjct: 253 ADPV 256
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 124/231 (53%), Gaps = 38/231 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DRP + F+ + +YL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 34 GPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHAR 87
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G I PE+L K G IP A+ WF+ G I G NY + +
Sbjct: 88 WAMLGALGCITPELLAKNG-IPFGEAV-WFKAGAQIFAEGGLNYLGNENLIHAQSIIATL 145
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ +MG AE R AN G +G DP +PGG F+PLGL D
Sbjct: 146 AFQVVVMGLAEAYR----ANGGPLGEGL------------DPLHPGGA-FDPLGLADDPD 188
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P N
Sbjct: 189 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAF 239
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 119/214 (55%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL G +PGDYG+DP GLS PE K+ A+ E+I+ R+AMLGA G I PE K
Sbjct: 90 EYLTGEVPGDYGYDPFGLSKKPEDFA-----KYQAF-ELIHARWAMLGAAGFIIPEAFNK 143
Query: 125 AGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL-----FVLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG ++ GT NY+ P + V E+ L+G AE+ R +
Sbjct: 144 YGANCGPEAV-WFKTGALLLDGGTLNYFGKPIPINLILAVVAEIVLVGGAEYYRIING-- 200
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL KD K+KE+KNGRLAM A+
Sbjct: 201 ---------LDLE-------DKLHPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAMFAM 243
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG++ Q VTG GP +NL HL+DP NN+LT +
Sbjct: 244 LGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 277
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 142/283 (50%), Gaps = 49/283 (17%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQG-----ADRP 56
+T AL S SL LG +A G+ R +R PV G ADR
Sbjct: 3 STMALSSPSLAGKAVK----LGPSAASELLGNGR---ISMRKTIAKPVSSGSPWYGADRV 55
Query: 57 LWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGA 113
+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA
Sbjct: 56 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGA 109
Query: 114 VGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMAL 164
+G + PE+L + G+ E WF+ G I G +Y + ++ ++ L
Sbjct: 110 LGCVFPELLARNGVKFGEAV--WFKAGAQIFSDGGLDYLGNSSLVHAQSILAIWATQVVL 167
Query: 165 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 224
MG E R P LG DP YPGG F+PLGL D ++ + K
Sbjct: 168 MGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELK 210
Query: 225 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KE+KNGRLAM ++ G+FVQ +VTG GP +NL D LADPVNNN
Sbjct: 211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADPLADPVNNN 253
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 131/244 (53%), Gaps = 40/244 (16%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGT 89
S+ K S V +++P G DR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 38 SATKKSVV---SASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET- 93
Query: 90 GGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTY 148
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G
Sbjct: 94 --FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGL 146
Query: 149 NYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
+Y +P ++ ++ LMG E R P LG DP
Sbjct: 147 DYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA--GGP--------------LGEVTDP 190
Query: 201 AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
YPGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL
Sbjct: 191 IYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHL 249
Query: 261 ADPV 264
ADPV
Sbjct: 250 ADPV 253
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 119/214 (55%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL G +PGDYG+DP GLS PE K+ A+ E+I+ R+AMLGA G I PE K
Sbjct: 91 EYLTGEVPGDYGYDPFGLSKKPEDFA-----KYQAF-ELIHARWAMLGAAGFIIPEAFNK 144
Query: 125 AGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL-----FVLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG ++ GT NY+ P + V E+ L+G AE+ R +
Sbjct: 145 YGANCGPEAV-WFKTGALLLDGGTLNYFGKPIPINLIVAVVAEIVLVGGAEYYRIING-- 201
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL KD K+KE+KNGRLAM A+
Sbjct: 202 ---------LDLE-------DKLHPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAMFAM 244
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG++ Q VTG GP +NL HL+DP NN+LT +
Sbjct: 245 LGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 278
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 118/220 (53%), Gaps = 35/220 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL+G PGDYG+D GLS DPE + E EVI+ R+AMLGA+G + PE+L K
Sbjct: 53 SYLNGEFPGDYGWDTAGLSADPETFARYREI------EVIHARWAMLGALGCVTPELLAK 106
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQD 175
G+ E WF+ G I + NY + + ++ LMG AE R
Sbjct: 107 NGVSFGEAV--WFKAGAQIFGSDGLNYLGNSSLVHAQSIIATLACQVILMGGAEAYRAAG 164
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
PG G D YPGGP F+PLGL D + + K+KE+KNGRLAM
Sbjct: 165 -EGPGLEGL--------------DSLYPGGP-FDPLGLADDPDTFSELKVKEIKNGRLAM 208
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 274
++ G+FVQ +VTG GP +NL DHLADP VNN + KF
Sbjct: 209 FSMFGFFVQAIVTGKGPIENLSDHLADPGVNNGFAAATKF 248
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 146/287 (50%), Gaps = 37/287 (12%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRA--ASTPPVKQGADRPLWF 59
A +A+ +SSL E+ R+ L + ++ SSR F +A A G +RP WF
Sbjct: 65 AVKAIANSSLG---ESLRRRLEEKKKEAVENSSR---FKAKAQEARNDSKWYGKERPRWF 118
Query: 60 AS--KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
YL G LPGDYGFD GL G K+ + E+++ R+AML A+GA+
Sbjct: 119 GPIPYDYPPYLTGELPGDYGFDIAGL----GKDRLTFDKYFNF-EILHARWAMLAALGAL 173
Query: 118 APEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLFVLEMALMG 166
PE+L G W++ G G T +Y P + + ++ LM
Sbjct: 174 IPEVLDLTGAF-HFAEPVWWRVGYSKLQGETLDYLGIPGLHVAGSQGVIVIAICQVLLMV 232
Query: 167 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
E+ R+ G + YL GD YPGG LF+PL L +D + +D K+K
Sbjct: 233 GPEYARY--------CGIEALEPLGIYL--PGDINYPGGTLFDPLNLSEDPVAFEDLKVK 282
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
E+KNGRLAM+A LG++ Q TG GP QNL+DH++DP++NN+L L+
Sbjct: 283 EIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLLAMLQ 329
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 119/217 (54%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S + SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G + P
Sbjct: 60 SGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGIVFP 113
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 114 EPLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEG 171
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 172 YRIA--GGP--------------LGEVTDPTYPGGS-FDPLGLADDPEAFAELKVKELKN 214
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 215 GRLAMFSVFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 128/245 (52%), Gaps = 31/245 (12%)
Query: 42 RAASTPPVKQGADRPLWF--ASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWL 98
R A T G +RP W + ++L G PGDYGFD GL DP +
Sbjct: 93 RQARTASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFN---- 148
Query: 99 AYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP--- 154
E+++ R+AML A+G + PE+L G++ W++ G G T +Y P
Sbjct: 149 --FEILHCRWAMLAALGVVVPELLDLFGVV-HFVEPVWWKVGYAKLQGDTLDYLGIPGFR 205
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
+ + + LM E+ R+ G + YL GD YPGG L
Sbjct: 206 IAGGQGVIVIAICQALLMVGPEYARY--------CGIEALEPLGLYL--PGDINYPGGAL 255
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL KD + +D K+KE+KNGRLAM+A LG+++Q VTG GP QNL++HL+DP++NN
Sbjct: 256 FDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNN 315
Query: 268 VLTSL 272
+L+S
Sbjct: 316 ILSSF 320
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 120/217 (55%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S + SYL G PGDYG+D GLS DPE F + + L EVI+ +AMLGA+G + P
Sbjct: 3 SGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSTWAMLGALGCVFP 56
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 57 ELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 114
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 115 YRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKN 157
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 158 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 194
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 125/228 (54%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRP + S+ + SYL G PGDYG+D +S DPE F + + L EVI+ R+
Sbjct: 12 GPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPET---FAKNREL---EVIHCRW 65
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 66 AMLGALGCVFPELLVKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 123
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 124 CQVVLMGLIEGYRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEA 166
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 167 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 214
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 122/214 (57%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GL PE K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 106 EYLNGEVPGDYGYDPFGLIKKPENFD-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 159
Query: 125 AGLIPQETALAWFQTG-VIPPAGTYNYW--ADPYTLF---VLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG ++ GT +Y+ + P L V E+ L+G AE+ R +
Sbjct: 160 FGAYCGPEAV-WFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNG-- 216
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L FE D +PGGP F+PLGL KD K+KE+KNGRLAM ++
Sbjct: 217 ---------LDFE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFSM 259
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+FVQ VTG GP +NL HL+DP NN+LT L
Sbjct: 260 LGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVL 293
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 130/237 (54%), Gaps = 37/237 (15%)
Query: 43 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLA 99
AAS+ G DR + S ++ SYL G PGDYG+D GLS DPE F + + L
Sbjct: 43 AASSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL- 98
Query: 100 YGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP---- 154
EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 99 --EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 155 ----YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNP 210
++ ++ LMG E R G +G DP YPGG F+P
Sbjct: 155 AQSILAIWATQVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDP 197
Query: 211 LGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
LGL +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL D LADPVNNN
Sbjct: 198 LGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADPLADPVNNN 254
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 119/217 (54%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + L EVI+GR+AMLGA+G I P
Sbjct: 56 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 109
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 110 EVLQKWVNVNFKEPV-WFKAGAQIFSQGGLDYLGNPNLVHAQSILAVLGFQVLLMGAVEG 168
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G + G+G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 169 FRIN--------------GLDGV--GNGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 212
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +N LDHL +PV NN
Sbjct: 213 GRLAMFSMFGFFVQAIVTGKGPLENWLDHLDNPVANN 249
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 121/224 (54%), Gaps = 34/224 (15%)
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
F+ + YL G PGDYG+D GLS DP+ + E E+I+ R+A+LGA+G +
Sbjct: 45 FSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREI------ELIHARWALLGALGIL 98
Query: 118 APEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGF 167
PE+L + AG+ Q WF+ G I G NY + + +++ LMG
Sbjct: 99 TPELLSQYAGV--QFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGL 156
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
AE R AN GS G FL D YPGGP F+PLGL D + + K+KE
Sbjct: 157 AEAYR----ANGGSEG---FLD-------DLDTLYPGGP-FDPLGLADDPDTFAELKVKE 201
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
+KNGRLAM + LG+FVQ +VTG GP QNL DHLADP N S
Sbjct: 202 IKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFAS 245
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 136/284 (47%), Gaps = 49/284 (17%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA + + +LT VE A++ G + ++ S + G DR W
Sbjct: 1 MAFALISNRALTVKVEAAKKAAGTKQTKAAPAKSAGIEWY-----------GPDRAKWLG 49
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S + +YL G PGDYG+D GLS DPE + E EVI+ R+A+LGA+G +
Sbjct: 50 PFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYREL------EVIHARWALLGALGIL 103
Query: 118 APEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGF 167
PE+L AG+ E WF+ G I G +Y P + +++ LMG
Sbjct: 104 TPELLSTYAGVKFGEPV--WFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGL 161
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R N G G DP YPG F+PLGL D + + K+KE
Sbjct: 162 IEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTFAELKVKE 204
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
+KNGRLAM + G+FVQ +VTG GP QNL DHLADP NN +
Sbjct: 205 IKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAA 248
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 119/214 (55%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL G +PGDYG+DP GLS PE K+ A+ E+I+ R+AMLGA G I PE K
Sbjct: 94 EYLTGEVPGDYGYDPFGLSKKPEDFA-----KYQAF-ELIHARWAMLGAAGFIIPEAFNK 147
Query: 125 AGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL-----FVLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG ++ GT NY+ P + + E+ L+G AE+ R + N
Sbjct: 148 YGANCGPEAV-WFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLN 206
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
FE D +PGGP F+PLGL D K+KE+KNGRLAM A+
Sbjct: 207 -----------FE-------DKLHPGGP-FDPLGLANDPDQAALLKVKEIKNGRLAMFAM 247
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG++ Q VTG GP +NL HL+DP NN+LT +
Sbjct: 248 LGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 281
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 119/214 (55%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL G +PGDYG+DP GLS PE K+ A+ E+I+ R+AMLGA G I PE K
Sbjct: 92 EYLTGEVPGDYGYDPFGLSKKPEDFS-----KYQAF-ELIHARWAMLGAAGFIIPEAFNK 145
Query: 125 AGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL-----FVLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG ++ GT NY+ P + + E+ L+G AE+ R + N
Sbjct: 146 YGANCGPEAV-WFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLN 204
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
FE D +PGGP F+PLGL D K+KE+KNGRLAM A+
Sbjct: 205 -----------FE-------DKLHPGGP-FDPLGLANDPDQAALLKVKEIKNGRLAMFAM 245
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG++ Q VTG GP +NL HL+DP NN+LT +
Sbjct: 246 LGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 279
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 118/212 (55%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SY G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 66 SYRTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSR 119
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 120 NGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA- 176
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG DP YPGG F+PLGL D ++ + K+KE+K+GRLAM
Sbjct: 177 -GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKHGRLAM 220
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 221 FSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 128/239 (53%), Gaps = 30/239 (12%)
Query: 52 GADRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVIN 105
G DR L+ S + YL+G L GDYG+DPLGL DPE + E E+++
Sbjct: 24 GPDRKLFLPSGLYDRSEIPDYLNGELAGDYGYDPLGLGKDPETVAKYRE------NELLH 77
Query: 106 GRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP---------- 154
R+AML A G + PE L G WF+TG + GT NY+A P
Sbjct: 78 ARWAMLAAAGILIPEGLQANG--ANIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPL 135
Query: 155 YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYPGGPLFNPLGL 213
+ + +E+ LMG E R G G +G F+ + DP YPGGP F+PLGL
Sbjct: 136 FAVIAVEVGLMGAVEFYRRN---GSGPAGYSPGIGKFDSSVFDGLDPLYPGGP-FDPLGL 191
Query: 214 GKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
D + +++ K+KE+KNGRLAM+++LG+ VQ VTG GPY N H+ADP N+LT L
Sbjct: 192 ADDPEVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVL 250
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 126/228 (55%), Gaps = 36/228 (15%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR + S + SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 30 GSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 83
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 84 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 141
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R A G +G + D YPGG F+PLGL D ++
Sbjct: 142 TQVILMGAVEGYRV---AGNGPLGE------------AEDLLYPGGS-FDPLGLATDPEA 185
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 186 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 233
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 118/212 (55%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 40 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLSR 93
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 94 NGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA- 150
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG P YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 151 -GGP--------------LGKVTGPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 194
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 195 FSMFGFFVQAIVTGKGPLENLADHLADPVNNN 226
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 124/231 (53%), Gaps = 38/231 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DRP + F+ + +YL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 14 GPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHAR 67
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G I PE+L K G IP A+ WF+ G I G NY + +
Sbjct: 68 WAMLGALGCITPELLAKNG-IPFGEAV-WFKAGSQIFAEGGLNYLGNENLVHAQSIIATL 125
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ +MG AE R AN G +G DP +PGG F+PLGL D
Sbjct: 126 AFQVVVMGLAEAYR----ANGGPLGEGL------------DPLHPGG-AFDPLGLADDPD 168
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P N
Sbjct: 169 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAF 219
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 125/238 (52%), Gaps = 33/238 (13%)
Query: 52 GADRPLWF--ASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRY 108
G DRP W +L G PGDYGFD GL DP + E+++ R+
Sbjct: 96 GGDRPRWLGPVPYDYPEHLTGEYPGDYGFDIAGLGRDPIAFANYFN------FEILHCRW 149
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTL 157
AML A+G + PE+L GL+ W++ G G T +Y P +
Sbjct: 150 AMLAALGVVIPELLDLFGLV-HFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVI 208
Query: 158 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 217
+ + LM E+ R+ G + YL GD YPGG LF+PLGL KD
Sbjct: 209 AICQALLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGALFDPLGLSKDP 258
Query: 218 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
+ +D K+KE+KNGRLAM+A LG+++Q VTG GP QNL++HL+DP++NN+L+S FH
Sbjct: 259 VAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVEHLSDPLHNNILSS--FH 314
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 131/259 (50%), Gaps = 44/259 (16%)
Query: 29 SPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSL----------SYLDGSLPGDYGF 78
SP S GS V T +G W+ S++ SYL G PGDYG+
Sbjct: 21 SPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSERVKYLGPFSGEPPSYLTGEFPGDYGW 80
Query: 79 DPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWF 137
D GLS DPE F + L +VI+ R+AMLGA+G + PE+L + G+ E WF
Sbjct: 81 DTAGLSADPET---FARNREL---QVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WF 132
Query: 138 QTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFL 188
+ G I G +Y +P ++ ++ LMG E R
Sbjct: 133 KAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG------------- 179
Query: 189 GFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT 248
+ LG + D YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+F Q +VT
Sbjct: 180 --DGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFAQAIVT 236
Query: 249 GVGPYQNLLDHLADPVNNN 267
G GP +NL DHLADPVNNN
Sbjct: 237 GKGPLENLADHLADPVNNN 255
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 134/259 (51%), Gaps = 41/259 (15%)
Query: 25 RSAQSP-TGSSRKGSFVVRAASTPPVKQGADRPLW---FASKQSLSYLDGSLPGDYGFDP 80
RS+ P T +SR V RAA G DRP + F+ + +YL G PGDYG+D
Sbjct: 10 RSSVRPATVASRAARVVPRAAIE---WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDT 66
Query: 81 LGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQT 139
GLS DPE + E E+I+ R+AMLGA+G + PE+L K + A+ WF+
Sbjct: 67 AGLSADPETFKRYREL------ELIHARWAMLGALGCVTPELLSKYAGVSFGEAV-WFKA 119
Query: 140 GV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF 190
G I G NY + + ++ +MG AE R AN G +G
Sbjct: 120 GAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR----ANGGPLGEGL---- 171
Query: 191 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
DP +PGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG
Sbjct: 172 --------DPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 222
Query: 251 GPYQNLLDHLADPVNNNVL 269
GP +NL DHLA+P N
Sbjct: 223 GPIENLSDHLANPSAVNAF 241
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 139/280 (49%), Gaps = 53/280 (18%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
+ +A VS T VE R + A A +P SF G +RPL+
Sbjct: 9 SARAAVSRRSTVKVEARRTVKPASKASTPD------SFWY----------GPERPLFLGA 52
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
+ + SYL G PGDYG+D GLS DPE + E E+I+ R+AMLGA+G I
Sbjct: 53 FTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWAMLGALGCIF 106
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+LG G +P A+ WF+ G I G +Y +P + ++ LMG E
Sbjct: 107 PELLGSYG-VPFGEAV-WFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIE 164
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R N G +G D YPGG F+PLGL D + + K+KE+K
Sbjct: 165 GYR----VNGGPLGEGL------------DKLYPGGS-FDPLGLADDPDTFAELKVKEIK 207
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
NGRLAM ++ G+FVQ +VTG GP QNL DHLA+P NN
Sbjct: 208 NGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNNAF 247
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 118/212 (55%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 65 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSR 118
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 119 NGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA- 175
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 176 -GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAM 219
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLA PVNNN
Sbjct: 220 FSMFGFFVQAIVTGKGPLENLADHLAGPVNNN 251
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 145/281 (51%), Gaps = 43/281 (15%)
Query: 2 ATQALVSSSLTSSVETARQILG-ARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
AT AL S +L + R + G R TG + + AAS P G DR L+
Sbjct: 4 ATMALSSPALAGKI--GRDVFGEGRITMRKTGGRARPT----AASGSP-WYGPDRVLYLG 56
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLG G I
Sbjct: 57 PLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGVAGFI 110
Query: 118 APEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLF---VLEMALMGFAEHR 171
PE K G A+ WF+TG + G T NY+ + P L + E+ L+G AE+
Sbjct: 111 IPEACNKFGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLILAVIAEVVLVGGAEYY 169
Query: 172 RFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNG 231
R + L E D +PGGP F+PLGL D K+KE+KNG
Sbjct: 170 RIING-----------LDLE-------DKLHPGGP-FDPLGLASDPDQAALLKVKEIKNG 210
Query: 232 RLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
RLAM ++LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 211 RLAMFSMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 251
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 119/217 (54%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PG+YG+D GLS DPE F + + L EVI+GR+AMLGA G I P
Sbjct: 16 SVQTPSYLTGEFPGEYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGAFGCITP 69
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 70 EVLQKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEG 128
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G + G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 129 LRIN--------------GLDGV--GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 172
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 173 GRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 209
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 117/217 (53%), Gaps = 33/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + L EVI+GR+AMLGA+G I P
Sbjct: 62 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGALGCITP 115
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 116 EVLQKWVRVSFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEG 174
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R PG G G+ YPGG F+PLGL D + + K+KE+KN
Sbjct: 175 YRINGL--PGV--------------GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKN 218
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ +FVQ +VTG G +NLLDH+ +PV NN
Sbjct: 219 GRLAMFSMFRFFVQAIVTGKGSLENLLDHIDNPVANN 255
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 138/284 (48%), Gaps = 50/284 (17%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ + A ++S Q+LG + G + +R A+T V A W+
Sbjct: 3 IGSCAFAGGQISSLKPHTNQLLGVGA-----GVHGEARVTMRKAATKKVSVSASTSPWYG 57
Query: 61 SKQSL----------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
+ L SYL G PGDYG+D GLS DPE F + + L EVI+ R+A
Sbjct: 58 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWA 111
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 169
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R P LG DP YPGG F+PL L D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLRLADDPDAF 212
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 264
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 119/212 (56%), Gaps = 31/212 (14%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL G PGDYG+D GLS DP+ + E EVI+ R+AMLGA+G I PE+L K
Sbjct: 46 DYLTGEFPGDYGWDTAGLSADPQTFSRYREV------EVIHARWAMLGALGCITPELLAK 99
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQD 175
G +P A+ WF+ G I G NY + + +++ LMG AE R
Sbjct: 100 NG-VPFGEAV-WFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVILMGAAEAYR--- 154
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
AN G+ G GF + L D YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 155 -ANGGAPG-----GFGEDL----DSLYPGGKFFDPLGLADDPDTLAELKVKELKNGRLAM 204
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP NL HLADP NN
Sbjct: 205 FSMFGFFVQAIVTGQGPIANLDAHLADPSGNN 236
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 139/284 (48%), Gaps = 50/284 (17%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ + A ++S Q+LG + G + +R A+T V A W+
Sbjct: 3 IGSCAFAGGQISSLKPHTNQLLGVGA-----GVHGEARVTMRKATTKKVSVPASTSPWYG 57
Query: 61 SKQSL----------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
+ L SYL G PGDYG+D GLS DPE F + + L EVI+ R+A
Sbjct: 58 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWA 111
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 169
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R G R+ DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA-----GGPLREVT-----------DPIYPGGS-FDPLGLADDPDAF 212
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 264
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 256
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 139/259 (53%), Gaps = 45/259 (17%)
Query: 33 SSRKGSFVVRAASTPPVKQ-------GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGL 83
+ RK + V+A T K G +RPL+ S + +YL+G PGDYG+D GL
Sbjct: 16 AGRKTTVSVQARRTQAKKAVPESPFYGPNRPLFLGGLSGEPPAYLNGEFPGDYGWDTAGL 75
Query: 84 S-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGL-IPQETALAWFQTGV 141
S DPE F + L E+I+ R+A+LGA+G + PE+L + G+ +P + WF+ G
Sbjct: 76 SADPET---FKRYRQL---ELIHARWALLGALGCVVPELLARNGVAMPADGV--WFKVGA 127
Query: 142 -IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK 192
I G NY + + ++++ LMG+AE R N G +G
Sbjct: 128 EIFKEGGLNYLGNENLVHAQSIVATLLVQLVLMGWAEGYRI----NGGPLGEGL------ 177
Query: 193 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252
DP YPGG F+PLGL D ++ + K+KE+KNGR+AM A+ G+ VQ +VT GP
Sbjct: 178 ------DPLYPGGA-FDPLGLADDPDTLAELKVKELKNGRMAMAAMFGFLVQAIVTQKGP 230
Query: 253 YQNLLDHLADPVNNNVLTS 271
+NL DHLA P NNV ++
Sbjct: 231 LENLADHLAAPGTNNVFSN 249
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 119/214 (55%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL G +PGDYG+DP GLS PE K+ A+ E+I+ R+AMLGA G I PE K
Sbjct: 92 EYLTGEVPGDYGYDPSGLSKKPEDFS-----KYQAF-ELIHARWAMLGAAGFIIPEAFNK 145
Query: 125 AGLIPQETALAWFQTG-VIPPAGTYNYWADPYTL-----FVLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG ++ GT NY+ P + + E+ L+G AE+ R + N
Sbjct: 146 YGANCGPEAV-WFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLN 204
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
FE D +PGGP F+PLGL D K+KE+KNGRLAM A+
Sbjct: 205 -----------FE-------DKLHPGGP-FDPLGLANDPDQAALLKVKEIKNGRLAMFAM 245
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG++ Q VTG GP +NL HL+DP NN+LT +
Sbjct: 246 LGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 279
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 126/236 (53%), Gaps = 38/236 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DRPL+ + + SYL G PGDYG+D GLS DPE + E E+I+ R+
Sbjct: 43 GPDRPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARW 96
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G I PE+LG G+ E+ WF+ G I G +Y +P +
Sbjct: 97 AMLGALGCIFPELLGSYGVPFGESV--WFKAGAQIFQEGGLDYLGNPSLVHAQSILAILG 154
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R N G +G D YPGG F+PLGL D +
Sbjct: 155 TQVILMGAIEGYR----VNGGPLGEGL------------DKLYPGGS-FDPLGLADDPDT 197
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 274
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P VNN + KF
Sbjct: 198 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGVNNAFAYATKF 253
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 120/231 (51%), Gaps = 38/231 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 42 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHAR 95
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G I PE+L K+G Q WF+ G I G +Y +P +
Sbjct: 96 WAMLGALGCITPELLAKSGT--QFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATL 153
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
+++ LMG E R N G G DP YPG F+PLGL D
Sbjct: 154 AVQVILMGLVEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPD 196
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHL++P NN
Sbjct: 197 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAF 247
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 126/240 (52%), Gaps = 31/240 (12%)
Query: 49 VKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPK---WLAYGEVIN 105
V + R WF + YL G L GDYGFDPLG D EP+ W+ E+++
Sbjct: 24 VARAEQRASWFPGNPAPEYLKGELAGDYGFDPLGFGD--------EPRRLEWMVQAELVH 75
Query: 106 GRYAMLGAVGAIAPEILGKAGLIPQETALA---WFQTG-VIPPAGTYNYWADPYTLFVLE 161
R+AMLGA G + PEI K G+ LA W++ G V+ +G ++ + +T+F+
Sbjct: 76 CRWAMLGAAGILLPEIGNKTGMQSAAPGLAFPHWWEAGKVVAESGPWSMGSLTFTMFL-- 133
Query: 162 MALMGFAEHRRFQDWANPGS---------MGRQYFLGFEKYLGGSGDPAYPGGPLFNPLG 212
LMG+AEH+R D+ PGS +G G E+ L + YPGG +F+P
Sbjct: 134 --LMGWAEHKRLYDFVKPGSQAVGWAWAPLGLGSITGVEEPLVAK-ENGYPGG-IFDPFQ 189
Query: 213 LGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV-TGVGPYQNLLDHLADPVNNNVLTS 271
+ K+E K +K EV NGRLAM A+ G+ Q + G GP NL+DH+++P T+
Sbjct: 190 MSKNEAKYKWYKQSEVTNGRLAMTAMFGFVSQHIAYPGKGPIDNLVDHVSNPTKVTFATN 249
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 132/238 (55%), Gaps = 28/238 (11%)
Query: 52 GADRPLWF-----ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVING 106
G DR L+ A + L+G+LPGDYG+DPLGL+ T K+ A E+++
Sbjct: 50 GPDRALFLPGGLMARDEINPLLNGTLPGDYGYDPLGLAKDAET----LSKYQA-NELLHA 104
Query: 107 RYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWA-------DPYTLF 158
R+AML A GAI PE L G WF+TG + GT N++A +P LF
Sbjct: 105 RWAMLAAAGAIIPEGLAANG--ADVKGATWFETGAAMLNGGTLNWFAVPIANISNPLPLF 162
Query: 159 VL---EMALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYPGGPLFNPLGLG 214
V+ +ALMG AE+ R G G +G F++ S D YPGGP F+PLGL
Sbjct: 163 VVVAANVALMGAAENYRRT---GEGPAGYSPGVGKFDESAYDSMDSLYPGGP-FDPLGLA 218
Query: 215 KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
D + + + K+KE+KNGRLAM++ LG+ VQ VTG GPY N H+ADP N+LT L
Sbjct: 219 DDPEVLAELKVKEIKNGRLAMVSFLGFAVQAAVTGEGPYANWSKHVADPFGYNLLTIL 276
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 124/227 (54%), Gaps = 35/227 (15%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DR L+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 51 GPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP--------YTLFVL 160
AMLGA+G + PE+L + G+ E A+ + I G +Y +P ++
Sbjct: 105 AMLGALGCVFPELLARNGVKFGE-AVGFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 163
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 164 QVVLMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEAF 206
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+K GRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN
Sbjct: 207 AELKVKELKKGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 253
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 128/251 (50%), Gaps = 44/251 (17%)
Query: 36 KGSFVVRAASTPPVKQ-------GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-D 85
+G F +R+ + P + G DR + S Q+ SYL G PGDYG+D GLS +
Sbjct: 31 EGGFTMRSTLSRPRQSITGGPWYGPDRVKYMGPFSGQTPSYLTGEFPGDYGWDSAGLSAE 90
Query: 86 PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPP 144
PE F + + L EVI+ R+AMLG VG I PE+L + G+ E WF+ G I
Sbjct: 91 PET---FAKNREL---EVIHARWAMLGTVGCIVPELLERNGVKIGEAV--WFKAGSQIFR 142
Query: 145 AGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGG 196
NY DP + ++ LMG E R P LG
Sbjct: 143 DEGLNYLGDPKLIHAQNILAVLAAQVILMGAIEGYRIS--GGP--------------LGE 186
Query: 197 SGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 256
DP YPGG F+PL L D + K+KE+KNGRLAM A+LG++VQ +VTG GP +NL
Sbjct: 187 PTDPLYPGGN-FDPLHLADDPEEFAILKVKEIKNGRLAMFAMLGFYVQAIVTGKGPLENL 245
Query: 257 LDHLADPVNNN 267
DHLADP NN
Sbjct: 246 YDHLADPFKNN 256
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 117/212 (55%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 47 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLAR 100
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y + ++ ++ LMG E R
Sbjct: 101 NGVKFGEAC--WFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIA- 157
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG DP YPGG F+PL L D ++ + K+KE+KNGRLAM
Sbjct: 158 -GGP--------------LGEVTDPIYPGGS-FDPLALADDPEAFAELKVKELKNGRLAM 201
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 202 FSMFGFFVQAIVTGKGPLENLADHLADPVNNN 233
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 131/259 (50%), Gaps = 44/259 (16%)
Query: 29 SPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSL----------SYLDGSLPGDYGF 78
SP S GS V T +G W+ S + SYL G PGDYG+
Sbjct: 16 SPAASEVLGSGRVTMRKTTAKPKGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGW 75
Query: 79 DPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWF 137
D GLS DPE F + L EVI+ R+AMLGA+G + PE+L + G+ E WF
Sbjct: 76 DTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WF 127
Query: 138 QTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFL 188
+ G I G +Y +P ++ ++ LMG E R A G +G
Sbjct: 128 KAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV---AGNGPLGE---- 180
Query: 189 GFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT 248
+ D YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VT
Sbjct: 181 --------AEDLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 231
Query: 249 GVGPYQNLLDHLADPVNNN 267
G GP +NL DHLADPV NN
Sbjct: 232 GKGPIENLADHLADPVTNN 250
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 121/236 (51%), Gaps = 37/236 (15%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G +R LW S + SYL G PGDYG+D GLS DPE + E E+I+ R+
Sbjct: 55 GPERALWLGPLSGSAPSYLTGEFPGDYGWDSAGLSSDPETFKRYREL------ELIHARW 108
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L K G E WF+ G I G +Y +P
Sbjct: 109 AMLGALGCVTPELLAKNGTPIAEPV--WFKAGAQIFQEGGLDYLGNPGLVHAQSILATLA 166
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R N G G D +PGGP F+PL L +D +
Sbjct: 167 CQVILMGAIEGFR----VNGGPAGEGL------------DKLHPGGPWFDPLALAEDPDA 210
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 274
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL HLA+P VNN + KF
Sbjct: 211 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIENLESHLANPGVNNAFAFATKF 266
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 134/259 (51%), Gaps = 41/259 (15%)
Query: 24 ARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW---FASKQSLSYLDGSLPGDYGFDP 80
A Q PT SS GS + +S P G DRP + F+ + +YL G PGDYG+D
Sbjct: 30 ATHHQHPTKSS--GSTAPQLSSWP--WYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDT 85
Query: 81 LGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQT 139
GLS DPE + E E+I+ R+AMLGA+G + PE+L K + A+ WF+
Sbjct: 86 AGLSADPETFKRYREL------ELIHARWAMLGALGCVTPELLSKYAGVSFGEAV-WFKA 138
Query: 140 GV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF 190
G I G NY + + ++ +MG AE R AN G +G
Sbjct: 139 GAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR----ANGGPLGEGL---- 190
Query: 191 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
DP +PGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG
Sbjct: 191 --------DPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 241
Query: 251 GPYQNLLDHLADPVNNNVL 269
GP +NL DHLA+P N
Sbjct: 242 GPIENLSDHLANPSAVNAF 260
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL G +PGDYG+DP GLS P+ K+ A+ E+I+ R+AMLGA G I PE K
Sbjct: 93 EYLTGEVPGDYGYDPFGLSKKPDDF-----EKYQAF-ELIHARWAMLGAAGFIIPEAFNK 146
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLF---VLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ P L V E+ L+G AE+ R +
Sbjct: 147 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVILVGGAEYFRITNG-- 203
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
LGF+ D +PGGP F+PLGL KD K+KE+KNGRLAM A+
Sbjct: 204 ---------LGFD-------DKLHPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAMFAM 246
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F Q VTG GP +NL HL+DP NN+LT +
Sbjct: 247 LGFFFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 280
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 35/217 (16%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 25 SGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 78
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 79 ELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG 136
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G +G DP YPGG F+PLGL + ++ + K+KE+KN
Sbjct: 137 YRIAG----GPLGEVV------------DPLYPGGS-FDPLGLAEVPEAFAELKVKELKN 179
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FV +VTG GP +NL DHLADPVNNN
Sbjct: 180 GRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNN 216
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 119/214 (55%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
+YL G +PGDYG+DP GLS PE K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 93 AYLTGEVPGDYGYDPFGLSKKPEDFA-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 146
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLF---VLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ P L V E+ L+G AE+ R +
Sbjct: 147 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLIFAVVAEVVLVGGAEYYRIING-- 203
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL D K+KE+KNGRLAM A+
Sbjct: 204 ---------LDLE-------DKLHPGGP-FDPLGLANDPDQAALLKVKEIKNGRLAMFAM 246
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 247 LGFFIQAYVTGEGPVENLAAHLSDPFGNNLLTVI 280
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 140/272 (51%), Gaps = 43/272 (15%)
Query: 11 LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW---FASKQSLSY 67
+++ V++A + R +P GS R V RAA G DRP + F+ + +Y
Sbjct: 1 MSAVVKSAVRSTSVRP--TPVGS-RAARVVPRAAIE---WYGPDRPKFLGPFSEGDTPAY 54
Query: 68 LDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAG 126
L G PGDYG+D GLS DPE + E E+I+ R+AMLGA+G + PE+L K
Sbjct: 55 LTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWAMLGALGCVTPELLSKYA 108
Query: 127 LIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWA 177
+ A+ WF+ G I G NY + + ++ +MG AE R A
Sbjct: 109 GVSFGEAV-WFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR----A 163
Query: 178 NPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLA 237
N G +G DP +PGG F+PLGL D + + K+KE+KNGRLAM +
Sbjct: 164 NGGPLGEGL------------DPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFS 210
Query: 238 ILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+ G+FVQ +VTG GP +NL DHLA+P N
Sbjct: 211 MFGFFVQAIVTGKGPIENLSDHLANPSAVNAF 242
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 125/228 (54%), Gaps = 36/228 (15%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G+DR + S + SYL G PGDYG+D GLS DPE F + L EVI+ R+
Sbjct: 47 GSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRW 100
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 101 AMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 158
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R A G +G + D YPGG F+PLGL D ++
Sbjct: 159 TQVILMGAVEGYRV---AGNGPLGE------------AEDLLYPGGS-FDPLGLATDPEA 202
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPV NN
Sbjct: 203 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNN 250
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 119/231 (51%), Gaps = 35/231 (15%)
Query: 52 GADRPLWFASKQSL---SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DRP W YL G PGDYG+D LGLS DPE + E E+++ R
Sbjct: 127 GPDRPKWLPDAFLAGVPDYLTGEYPGDYGWDALGLSSDPETFANYRE------AELLHAR 180
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADPYTLFVL------ 160
+AMLGA+G I PEIL + E + WF+ G ++ + +Y P +
Sbjct: 181 WAMLGALGCIFPEILAMNYGVGLEEPV-WFKAGALVLNDKSIDYLGSPQLVHASSIIAIA 239
Query: 161 --EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG AE R A G E++ D +PGG FNPL GKDE
Sbjct: 240 AAQVLLMGGAEAYRASGVAPNG----------EEF-----DKMHPGGYYFNPLKFGKDEA 284
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+ + K+KE+KNGRLAM ++LG+++Q TG GP QNL+DH AD N N+
Sbjct: 285 DLAELKVKEIKNGRLAMFSMLGFYIQAATTGNGPLQNLVDHRADAANENIF 335
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 127/245 (51%), Gaps = 31/245 (12%)
Query: 42 RAASTPPVKQGADRPLWF--ASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWL 98
R A T G +RP W + ++L G PGDYGFD GL DP +
Sbjct: 93 RQARTASSWYGDERPRWLGPVPYEYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFN---- 148
Query: 99 AYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP--- 154
E+++ R+AML A+G + PE+L ++ W++ G G T +Y P
Sbjct: 149 --FEILHCRWAMLAALGVVVPELLDLFEVV-HFVEPVWWKVGYAKLQGDTLDYLGIPGFR 205
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
+ + + LM E+ R+ G + YL GD YPGG L
Sbjct: 206 IAGGQGVIVIAICQALLMVGPEYARY--------CGIEALEPLGLYL--PGDINYPGGAL 255
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL KD + +D K+KE+KNGRLAM+A LG+++Q VTG GP QNL++HL+DP++NN
Sbjct: 256 FDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNN 315
Query: 268 VLTSL 272
+L+S
Sbjct: 316 ILSSF 320
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 127/258 (49%), Gaps = 42/258 (16%)
Query: 29 SPTGSSRKGSFVVRAASTPPVK----QGADRPLW---FASKQSLSYLDGSLPGDYGFDPL 81
S + +KG+ A S P G +R W ++ + +YL G PGDYG+D
Sbjct: 15 SAKATGKKGTGKTAAKSAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTA 74
Query: 82 GLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG 140
GLS DPE + E E+I+ R+AMLGA+G + PE+L K G Q WF+ G
Sbjct: 75 GLSADPETFKRYREL------ELIHARWAMLGALGCLTPELLAKNGT--QFGEAVWFKAG 126
Query: 141 V-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 191
I G +Y +P + ++ LMG E R N G G
Sbjct: 127 AQIFSEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYR----VNGGPAGEGL----- 177
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
DP YPG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG G
Sbjct: 178 -------DPLYPGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 229
Query: 252 PYQNLLDHLADPVNNNVL 269
P QNL DHL++P NN
Sbjct: 230 PVQNLDDHLSNPTVNNAF 247
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 118/212 (55%), Gaps = 35/212 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 47 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLAR 100
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E + WF+ G I G +Y + ++ ++ LMG E R
Sbjct: 101 NGVKFGEAS--WFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIA- 157
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG DP YPGG F+PL L D ++ + K+KE+KNGRLAM
Sbjct: 158 -GGP--------------LGEVTDPIYPGGS-FDPLALADDPEAFAELKVKEIKNGRLAM 201
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLA+PVNNN
Sbjct: 202 FSMFGFFVQAIVTGKGPLENLADHLAEPVNNN 233
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GLS PE K+ A+ E+I+ R+AMLGA G I PE K
Sbjct: 91 EYLNGEVPGDYGYDPFGLSKKPEDFT-----KYQAF-ELIHARWAMLGAAGFIIPEAFNK 144
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVL---EMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + P L V E+ L+G AE+ R + N
Sbjct: 145 FGANCGPEAV-WFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLN 203
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
FE D +PGGP F+PLGL D K+KE+KNGRLAM A+
Sbjct: 204 -----------FE-------DKLHPGGP-FDPLGLADDPDQAAILKVKEIKNGRLAMFAM 244
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG++ Q VTG GP +NL HL+DP NN+LT +
Sbjct: 245 LGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVI 278
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 141/279 (50%), Gaps = 46/279 (16%)
Query: 1 MATQALVSSSLTSSVETARQILGA------RSAQSPTGSSRKGSFVVRAASTPPVKQGAD 54
+ + A L+S Q+LG S + S+ K SF A+++P G D
Sbjct: 3 IGSCAFAGGQLSSLKPHTNQLLGVGAGIHGESRVTMRKSATKKSF---ASASPSPWYGPD 59
Query: 55 RPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAML 111
R L+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AML
Sbjct: 60 RVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAML 113
Query: 112 GAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEM 162
GA+G + PE+L + G+ E WF+ G I G +Y +P ++ ++
Sbjct: 114 GALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 171
Query: 163 ALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKD 222
LMG E R P LG DP YPGG F+PLGL D + +
Sbjct: 172 ILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAFAE 214
Query: 223 FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLA 261
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA
Sbjct: 215 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLA 253
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 136/277 (49%), Gaps = 54/277 (19%)
Query: 7 VSSSLTSSVETARQILGARSAQ--SPTGSSRKGSFVVRAASTPP--VKQGADRPLWFA-- 60
+S++ SS + +L + G+S+ + R + P + G DRP +
Sbjct: 3 TASAIQSSSLAGQTLLRPHQNELVKKVGASQARITMRRTVRSAPESIWYGPDRPKYLGPF 62
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S+Q+ SYL G PGDYG+D GLS DPE +AMLGA+G + P
Sbjct: 63 SEQTPSYLTGEFPGDYGWDTAGLSADPE-------------------TFAMLGALGCVFP 103
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L K G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 104 ELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEG 161
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R P LG DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 162 YRVG--GGP--------------LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKN 204
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 205 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANN 241
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 125/240 (52%), Gaps = 40/240 (16%)
Query: 41 VRAASTPPVK-QGADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEP 95
VR S ++ G DRP W F+ SYL G PGDYG+D GLS DPE + E
Sbjct: 2 VRNVSRNAIEWYGPDRPKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQ 61
Query: 96 KWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWAD 153
E+I+ R+AMLGA+G + PEIL K AG+ E+ WF+ G I G +Y +
Sbjct: 62 ------ELIHARWAMLGALGCVTPEILAKYAGVSCGESV--WFKAGSQIFQEGGLDYLGN 113
Query: 154 P--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 205
P + ++ LMG E R N G +G DP +PG
Sbjct: 114 PSLVHAQSILAILGCQVVLMGLIEAYR----VNGGPLGEGL------------DPLHPGD 157
Query: 206 PLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVN 265
F+PLGL D + + K+KE+KNGRLAM ++ G++VQ +VTG GP +N DH+ADP N
Sbjct: 158 K-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWADHVADPFN 216
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 143/285 (50%), Gaps = 33/285 (11%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFAS 61
A +A+ +SS+ S+ R+ L + ++ SSR S + A G +RP WF
Sbjct: 62 AVKAIANSSIGVSL---RRRLEEKKKEAVENSSRFKS-KAQEARNDSKWYGKERPRWFGP 117
Query: 62 --KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
YL G LPGDYGFD GL G K+ + E+++ R+AML A+GA+ P
Sbjct: 118 IPYDYPPYLTGELPGDYGFDIAGL----GKDRLTFDKYFNF-EILHARWAMLAALGALIP 172
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLFVLEMALMGFA 168
E+ G W++ G G T Y P + + ++ LM
Sbjct: 173 EVFDLTGTF-HFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLMVGP 231
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E+ R+ G + YL GD YPGG LF+PL L +D + +D K+KE+
Sbjct: 232 EYARY--------CGIEALEPLGIYL--PGDINYPGGTLFDPLNLSEDPVAFEDLKVKEI 281
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
KNGRLAM+A LG++ Q TG GP QNL+DH++DP++NN++ L+
Sbjct: 282 KNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAMLQ 326
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 128/240 (53%), Gaps = 42/240 (17%)
Query: 45 STPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
+T PV G+ DR + S + SYL G PGDYG+D GLS DPE F + +
Sbjct: 38 TTRPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNR 94
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AM GA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 95 EL---EVIHCRWAMPGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFQEGGLDYLGNPS 149
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 150 LIHAQSILAIWACQVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS- 192
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLGL ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 193 FDPLGLADVPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 121/220 (55%), Gaps = 35/220 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 51 SGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFP 104
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEH 170
E+L + G+ E WF+ G I G +Y +P ++ ++ LMG E
Sbjct: 105 ELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG 162
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R G +G DP YPGG F+PLGL D ++ + K+KE+KN
Sbjct: 163 YRIAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELKVKELKN 205
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
GRLAM ++ G+FVQ +VTG GP +NL D LADPV NN +
Sbjct: 206 GRLAMFSMFGFFVQAIVTGKGPLENLADRLADPVANNAWS 245
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 118/231 (51%), Gaps = 36/231 (15%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DR LW S + +YL G PGDYG+D GLS DPE + E E+I+ R+
Sbjct: 54 GPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYREL------ELIHARW 107
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G I PE+L K G E WF+ G I G +Y +P
Sbjct: 108 AMLGALGCITPELLAKNGTPIVEPV--WFKAGAQIFAEGGLDYLGNPGLVHAQSILATLA 165
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+++ LMG E R N G G D +PGG F+PLGL +D +
Sbjct: 166 VQVILMGAIEGYR----VNGGPAGEGL------------DKLHPGGQFFDPLGLAEDPDA 209
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP NL +HLA P +N T
Sbjct: 210 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLANLDEHLASPFTSNAFT 260
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 139/276 (50%), Gaps = 44/276 (15%)
Query: 13 SSVETARQILGARSAQSPTGSSRKGSFVVRAAST--PPVKQGADRPLWFASKQSLSYLDG 70
+S A+ LGA A++ S + V RAA P + G P +S SYL+G
Sbjct: 2 ASTMMAKTFLGASLAKAVPTSGKGTKQVTRAAIEFYGPNRAGYLGPF----TKSPSYLNG 57
Query: 71 SLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIP 129
PGDYG+D GLS DPE + E EVI+ R+AMLGA+G + PE+L K G+
Sbjct: 58 EYPGDYGWDTAGLSADPETFARYREI------EVIHARWAMLGALGCVTPELLAKNGVSF 111
Query: 130 QETALAWFQTG--VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANP 179
E W++ G + P G +Y +P + ++ LMG E R N
Sbjct: 112 GEAV--WWKAGSQIFAPGG-LDYLGNPSLIHAQSIIAIVFSQVLLMGLIEGYR----VNG 164
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
G G D YPG F+PLGL D + + ++KE+KNGRLAM ++
Sbjct: 165 GPAGEGL------------DALYPG-EAFDPLGLADDPDTFAELRVKEIKNGRLAMFSMF 211
Query: 240 GYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 274
G+FVQ +VTG GP +NL DHLA+P VNN + KF
Sbjct: 212 GFFVQAIVTGKGPIENLADHLANPSVNNGFAAATKF 247
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 118/214 (55%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL G +PGDYG+DP GL PE K+ AY E+I+ R+AMLGA GA+ PE K
Sbjct: 85 EYLTGEVPGDYGYDPFGLGKKPEDFA-----KYQAY-ELIHARWAMLGAAGAVIPEACNK 138
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVL---EMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + P L V E+ L+G AE+ R +
Sbjct: 139 FGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVVLVGGAEYYRIING-- 195
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL D K+KE+KNGRLAM ++
Sbjct: 196 ---------LDLE-------DKLHPGGP-FDPLGLASDPDQAAILKVKEIKNGRLAMFSM 238
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
L +F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 239 LAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 272
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 26/226 (11%)
Query: 51 QGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
G RP WF ++ ++L G PGD GFDPLGL+ DPE + EV +GR+A
Sbjct: 356 SGEKRPTWFPGAEAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRD------SEVYHGRWA 409
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 169
MLG VG + PE+ G G+ AW++ G + G+ +Y +P + + L+ F
Sbjct: 410 MLGLVGCLVPEVFGNLGIAQLP---AWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTT 466
Query: 170 HRRF---QDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
F + W G + + + YPGGP F+PL LG + + KLK
Sbjct: 467 LLLFLPIEAWRWNGQIAPE--------AKSAERTTYPGGP-FDPLKLG----ASPELKLK 513
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
E+KNGRLAM+ + G++ Q VTG GP NL HLADP +NN+L ++
Sbjct: 514 EIKNGRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTV 559
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 116/231 (50%), Gaps = 36/231 (15%)
Query: 51 QGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
G RP WF ++ ++L G PGD GFDP GL+ DP F + EV +GR+A
Sbjct: 147 SGEKRPTWFPGAEAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRD------SEVFHGRWA 200
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMA------ 163
MLG VG + PE+ G G+ AW+ + +Y +P + ++
Sbjct: 201 MLGLVGCLVPEVFGNLGIAQLP---AWYDAATVANTSNLDYLGNPNLVHASNVSFIALST 257
Query: 164 --LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMK 221
LMG E R+ G++ + + YPGGP F+PL LG +
Sbjct: 258 LLLMGPVEAWRWN-----GALASE--------AKSAERTTYPGGP-FDPLKLG----ASP 299
Query: 222 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ KLKE+KNGRLAM+ + G++ Q VTG GP NL HLADP +NN+L ++
Sbjct: 300 ELKLKEIKNGRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTV 350
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 29/162 (17%)
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFA--------EH 170
PE+ G G+ AW++ G + G+ +Y +P + + L+ F E
Sbjct: 1 PEVFGNLGIAQLP---AWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPIEA 57
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R+ P + +++ YPGGP F+PL LG + + KLKE+KN
Sbjct: 58 WRWNGQIAPDAKSKEW-------------TTYPGGP-FDPLKLG----ASPELKLKEIKN 99
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
GRLAM+ + G++ Q VTG GP NL HLADP +NN+L ++
Sbjct: 100 GRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTV 141
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 68/178 (38%), Gaps = 39/178 (21%)
Query: 78 FDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAW 136
FDPL L + PE L E+ NGR AM+G G A
Sbjct: 81 FDPLKLGASPE----------LKLKEIKNGRLAMVGMFGFWAQS---------------- 114
Query: 137 FQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGG 196
+ TG P A + ADP +L M A + W PG+ + G
Sbjct: 115 YVTGEGPLANLAAHLADPAHNNLLNTVAMFAASGEKRPTWF-PGAEAPTWLTG------- 166
Query: 197 SGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 254
YPG F+P GL KD F+ EV +GR AML ++G V + +G Q
Sbjct: 167 ----EYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLVGCLVPEVFGNLGIAQ 220
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 120/231 (51%), Gaps = 38/231 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 38 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHAR 91
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G + PE+L K+G E WF+ G I G +Y +P +
Sbjct: 92 WAMLGALGCLTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATL 149
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
+++ LMG E R N G G DP YPG F+PLGL D
Sbjct: 150 AVQVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPD 192
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P NN
Sbjct: 193 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAF 243
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 124/237 (52%), Gaps = 39/237 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 39 GPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHAR 92
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G + PE+L K+G E WF+ G I G +Y +P +
Sbjct: 93 WAMLGALGCLTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATL 150
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
+++ LMG E R N G G DP YPG F+PLGL D
Sbjct: 151 AVQVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPD 193
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 274
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P VNN + KF
Sbjct: 194 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPGVNNAFAFATKF 250
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 128/256 (50%), Gaps = 40/256 (15%)
Query: 29 SPTGSSRKGSFVVRAASTPPVKQ--GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGL 83
S + +KG+ A P + G +R W ++ + +YL G PGDYG+D GL
Sbjct: 15 SAKATGKKGTSKTVAKPAPSGIEWYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGL 74
Query: 84 S-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV- 141
S DPE + E E+I+ R+AMLGA+G + PE+L K G+ Q WF+ G
Sbjct: 75 SADPETFKRYREL------ELIHARWAMLGALGCVTPELLSKNGV--QFGEAVWFKAGAQ 126
Query: 142 IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKY 193
I G +Y +P + ++ LMG E R N G G
Sbjct: 127 IFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYR----VNGGPAGEGL------- 175
Query: 194 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 253
DP YPG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 176 -----DPLYPGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 229
Query: 254 QNLLDHLADPVNNNVL 269
+NL DHLA+P NN
Sbjct: 230 ENLNDHLANPAVNNAF 245
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 115/210 (54%), Gaps = 33/210 (15%)
Query: 68 LDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAG 126
L G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G I PE+L K
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITPEVLEKWV 54
Query: 127 LIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWA 177
+ + + WF+ G I G +Y +P + ++ LMG E R
Sbjct: 55 KVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN--G 111
Query: 178 NPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLA 237
PG G G+ YPGG F+PLGL D + + K+KE+KNGRLAM +
Sbjct: 112 LPGV--------------GEGNNLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFS 157
Query: 238 ILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 158 MFGFFVQAIVTGKGPLENLLDHLDNPVANN 187
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 120/219 (54%), Gaps = 29/219 (13%)
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
+LDG PGDYGFD GL DP + E+++ R+AMLGA+G + PE+L
Sbjct: 4 EHLDGEFPGDYGFDIAGLGRDPVAFANYFN------FEILHCRWAMLGALGVVVPELLDL 57
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLFVLEMALMGFAEHRRF 173
G++ W++ G G T +Y P + + + LM E+ R+
Sbjct: 58 FGIV-HFVEPVWWKVGYAKLQGDTLDYLGIPGLRIAGGQGIIVIAICQALLMVGPEYARY 116
Query: 174 QDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRL 233
G + YL GD YPGG LF+PLGL KD + ++ K+KE+KNGRL
Sbjct: 117 --------CGIEALEPLGIYL--PGDLNYPGGALFDPLGLSKDPVAFEELKVKEIKNGRL 166
Query: 234 AMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
AM+A LG++VQ VTG GP QNL++HL+DP++NN+L+S
Sbjct: 167 AMVAWLGFYVQAAVTGKGPVQNLIEHLSDPLHNNILSSF 205
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 117/214 (54%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL G +PGDYG+DP GL PE K+ AY E+I+ R+AMLGA GA+ PE K
Sbjct: 86 EYLTGEVPGDYGYDPFGLGKKPEDFA-----KYQAY-ELIHARWAMLGAAGAVIPEACNK 139
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVL---EMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + P L V E+ L+G AE+ R +
Sbjct: 140 FGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVVLVGGAEYYRITNG-- 196
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL D K+KE+KNGRLAM ++
Sbjct: 197 ---------LDLE-------DKLHPGGP-FDPLGLASDPDQAAILKVKEIKNGRLAMFSM 239
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 240 FAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 273
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 119/233 (51%), Gaps = 37/233 (15%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DR LW F+ SYL G PGDYG+D GLS DP + E EVI+ R
Sbjct: 130 GPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRET------EVIHAR 183
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLF 158
+AMLGA+G + PE+L K +P + WF+ G I G +Y +P +
Sbjct: 184 WAMLGALGCVTPELLAKYSGVPIAEPV-WFKAGSQIFAEGGLDYLGNPSLVHAQSILAIL 242
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG AE R N G G D PGG F+PLGL D
Sbjct: 243 ACQVILMGGAEAYRV----NGGPAGEGL------------DAINPGGA-FDPLGLADDPD 285
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
+ + K+KE+KNGRLAM ++LG++VQ + TG GP +N +H+ADP N LT+
Sbjct: 286 TFAELKVKEIKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADPAGVNGLTN 338
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 119/233 (51%), Gaps = 37/233 (15%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DR LW F+ SYL G PGDYG+D GLS DP + E EVI+ R
Sbjct: 117 GPDRALWLGPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRET------EVIHAR 170
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLF 158
+AMLGA+G + PE+L K +P + WF+ G I G +Y +P +
Sbjct: 171 WAMLGALGCVTPELLAKYSGVPIAEPV-WFKAGSQIFAEGGLDYLGNPSLVHAQSILAIL 229
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG AE R N G G D PGG F+PLGL D
Sbjct: 230 ACQVILMGGAEAYRV----NGGPAGEGL------------DAINPGGA-FDPLGLADDPD 272
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
+ + K+KE+KNGRLAM ++LG++VQ + TG GP +N +H+ADP N LT+
Sbjct: 273 TFAELKVKEIKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADPAGVNGLTN 325
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 117/214 (54%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL G +PGDYG+DP GL PE K+ AY E+I+ R+AMLGA GA+ PE K
Sbjct: 86 EYLTGEVPGDYGYDPFGLGKKPEDFA-----KYQAY-ELIHARWAMLGAAGAVIPEACNK 139
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVL---EMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + P L V E+ L+G AE+ R +
Sbjct: 140 FGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVILVGGAEYYRITNG-- 196
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL D K+KE+KNGRLAM ++
Sbjct: 197 ---------LDLE-------DKLHPGGP-FDPLGLASDPDQAAILKVKEIKNGRLAMFSM 239
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 240 FAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 273
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 119/231 (51%), Gaps = 38/231 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 39 GPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHAR 92
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G + PE+L K G E WF+ G I G +Y +P +
Sbjct: 93 WAMLGALGCLTPELLAKNGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATL 150
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
+++ LMG E R N G G DP YPG F+PLGL D
Sbjct: 151 AVQVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPD 193
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P NN
Sbjct: 194 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAF 244
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 118/214 (55%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GLS PE K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 90 EYLNGEVPGDYGYDPFGLSKKPEDFA-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 143
Query: 125 AGLIPQETALAWFQTGVIPPAGTYNYW---ADPYTLF---VLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G Y+ P L + E+ L+G AE+ R +
Sbjct: 144 FGANCGPEAV-WFKTGALLLDGNTLYYFGKNIPINLVLAVIAEVVLVGGAEYYRIING-- 200
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL KD K+KE+KNGRLAM ++
Sbjct: 201 ---------LDLE-------DKLHPGGP-FDPLGLAKDPDQAAILKVKEIKNGRLAMFSM 243
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 244 LGFFIQAYVTGQGPVENLAAHLSDPFGNNLLTVI 277
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/279 (37%), Positives = 138/279 (49%), Gaps = 51/279 (18%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
A +A VS T VE R + A A +P SF G +RPL+
Sbjct: 2 AAKAGVSRRSTVRVEARRTVKPASKASTPD------SFWY----------GPERPLFLGA 45
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
+ + SYL G PGDYG+D GLS DPE + E E+I+ R+AMLGA+G I
Sbjct: 46 FTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWAMLGALGCIF 99
Query: 119 PEILGKAGLIPQETALAW------FQTGVIPPAGTYNYWADPYTLFVL--EMALMGFAEH 170
PE+LG G +P A+ + FQ G + G N L +L ++ LMG E
Sbjct: 100 PELLGSYG-VPFGEAVWFKAGAQIFQEGGLDYLGNSNLVHAQSILAILGTQVLLMGAIEG 158
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R N G +G D YPGG F+PLGL D + + K+KE+KN
Sbjct: 159 YR----VNGGPLGEGL------------DKLYPGGS-FDPLGLADDPDTFSELKVKEIKN 201
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
GRLAM ++ G+FVQ +VTG GP QNL DHLA+P NN
Sbjct: 202 GRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNNAF 240
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 122/234 (52%), Gaps = 38/234 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W F+ + SYL G PGDYG+D GL+ DP + E E+I+ R
Sbjct: 364 GPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE------AELIHAR 417
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLF 158
+AMLGA+G + PE L KAG+ E WF+ G I G +Y + +
Sbjct: 418 WAMLGALGVVFPEALAKAGVPLAEPV--WFKAGAQIFSEGGLDYLGNSNLVHAQSILAIL 475
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG AE R N G +G D YPGG F+PLGL D +
Sbjct: 476 AFQVVLMGLAEAYR----VNGGPLGED------------SDALYPGGA-FDPLGLADDPE 518
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ + K+KE+KNGRLAM A+ G++VQ LVTG GP +N H+ADP N N LT++
Sbjct: 519 TFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 572
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 122/234 (52%), Gaps = 38/234 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W F+ + SYL G PGDYG+D GL+ DP + E E+I+ R
Sbjct: 604 GPNRNKWLGPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE------AELIHAR 657
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLF 158
+AMLGA+G + PE L KAG+ E WF+ G I G +Y + +
Sbjct: 658 WAMLGALGVVFPEALAKAGVPLAEPV--WFKAGAQIFSEGGLDYLGNSNLVHAQSILAIL 715
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG AE R N G +G D YPGG F+PLGL D +
Sbjct: 716 AFQVVLMGLAEAYR----VNGGPLGED------------SDALYPGGA-FDPLGLADDPE 758
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ + K+KE+KNGRLAM A+ G++VQ LVTG GP +N H+ADP N N LT++
Sbjct: 759 TFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 812
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 122/234 (52%), Gaps = 38/234 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W F+ + SYL G PGDYG+D GL+ DP + E E+I+ R
Sbjct: 124 GPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE------AELIHAR 177
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLF 158
+AMLGA+G + PE L KAG+ E WF+ G I G +Y + +
Sbjct: 178 WAMLGALGVVFPEALAKAGVPLAEPV--WFKAGAQIFSEGGLDYLGNSNLVHAQSILAIL 235
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG AE R N G +G D YPGG F+PLGL D +
Sbjct: 236 AFQVVLMGLAEAYR----VNGGPLGED------------SDALYPGGA-FDPLGLADDPE 278
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ + K+KE+KNGRLAM A+ G++VQ LVTG GP +N H+ADP N N LT++
Sbjct: 279 TFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 332
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 194 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 253
LG D YPGG F+PLGL D ++ + K+KE+KNGRLAM A+ G++VQ LVTG GP
Sbjct: 15 LGEDSDALYPGGA-FDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPV 73
Query: 254 QNLLDHLADPVNNNVLTSL 272
+N H+ADP N N LT++
Sbjct: 74 ENWAAHVADPFNVNGLTAV 92
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 123/237 (51%), Gaps = 39/237 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 39 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHAR 92
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G + PE+L K G+ Q WF+ G I G +Y +P +
Sbjct: 93 WAMLGALGCVTPELLSKNGV--QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATL 150
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG E R N G G DP YPG F+PLGL D
Sbjct: 151 ACQVILMGLVEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPD 193
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 274
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P VNN + KF
Sbjct: 194 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFATKF 250
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 119/231 (51%), Gaps = 38/231 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 39 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHAR 92
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G + PE+L K G+ Q WF+ G I G +Y +P +
Sbjct: 93 WAMLGALGCLTPELLSKNGV--QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATL 150
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG E R N G G DP YPG F+PLGL D
Sbjct: 151 ACQVILMGLVEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPD 193
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P NN
Sbjct: 194 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAF 244
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 122/234 (52%), Gaps = 38/234 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W F+ + SYL G PGDYG+D GL+ DP + E E+I+ R
Sbjct: 141 GPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE------AELIHAR 194
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLF 158
+AMLGA+G + PE L KAG+ E WF+ G I G +Y + +
Sbjct: 195 WAMLGALGVVFPEALAKAGVPLAEPV--WFKAGAQIFSEGGLDYLGNSNLVHAQSILAIL 252
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG AE R N G +G D YPGG F+PLGL D +
Sbjct: 253 AFQVVLMGLAEAYR----VNGGPLGED------------SDALYPGGA-FDPLGLADDPE 295
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ + K+KE+KNGRLAM A+ G++VQ LVTG GP +N H+ADP N N LT++
Sbjct: 296 TFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 349
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 122/234 (52%), Gaps = 38/234 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W F+ + SYL G PGDYG+D GL+ DP + E E+I+ R
Sbjct: 381 GPNRNKWLGPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE------AELIHAR 434
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLF 158
+AMLGA+G + PE L KAG+ E WF+ G I G +Y + +
Sbjct: 435 WAMLGALGVVFPEALAKAGVPLAEPV--WFKAGAQIFSEGGLDYLGNSNLVHAQSILAIL 492
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG AE R N G +G D YPGG F+PLGL D +
Sbjct: 493 AFQVVLMGLAEAYR----VNGGPLGED------------SDALYPGGA-FDPLGLADDPE 535
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ + K+KE+KNGRLAM A+ G++VQ LVTG GP +N H+ADP N N LT++
Sbjct: 536 TFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 589
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 66/116 (56%), Gaps = 17/116 (14%)
Query: 157 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKD 216
+ ++ LMG AE R N G +G D YPGG F+PLGL D
Sbjct: 11 ILAFQVVLMGLAEAYR----VNGGPLGED------------SDALYPGGA-FDPLGLADD 53
Query: 217 EKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
++ + K+KE+KNGRLAM A+ G++VQ LVTG GP +N H+ADP N N LT++
Sbjct: 54 PETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 109
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 123/237 (51%), Gaps = 39/237 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 39 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHAR 92
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G + PE+L K G+ Q WF+ G I G +Y +P +
Sbjct: 93 WAMLGALGCLTPELLSKNGV--QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATL 150
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG E R N G G DP YPG F+PLGL D
Sbjct: 151 ACQVILMGLVEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPD 193
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 274
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P VNN + KF
Sbjct: 194 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFATKF 250
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 123/237 (51%), Gaps = 39/237 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 39 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHAR 92
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G + PE+L K G+ Q WF+ G I G +Y +P +
Sbjct: 93 WAMLGALGCLTPELLSKNGV--QFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATL 150
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG E R N G G DP YPG F+PLGL D
Sbjct: 151 ACQVILMGLVEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPD 193
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 274
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA+P VNN + KF
Sbjct: 194 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNNAFAFATKF 250
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 145/287 (50%), Gaps = 36/287 (12%)
Query: 3 TQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFAS- 61
+A+ +SS+ ++ R + ++AQ G +R+ VR S ++G RP W
Sbjct: 83 VKAIANSSIGEQLQQ-RMLKTKKAAQEAAGEAREAQSNVRDESMW-YREG--RPKWLGPI 138
Query: 62 -KQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
+L G PGDYGFD LGLS DP + E+++ R+AML A+G + P
Sbjct: 139 PYDYPDHLQGEAPGDYGFDILGLSRDPTAFERYFN------FEILHARWAMLAALGVVIP 192
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLFVLEMALMGFA 168
E+L + G + Q + W++ G G T +Y P + ++ LM
Sbjct: 193 ELLDRFGGV-QFSEPVWWKVGYAKLQGDTLDYLGIPGLHIAGAQGILVIAFCQVILMLGP 251
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E+ R+ +G FL GD YPGG LF+PLGL KD + +D K+KE+
Sbjct: 252 EYARYCGIEALEPLG--IFL--------PGDVNYPGGALFDPLGLTKDAAAFEDLKVKEM 301
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
KNGRLAM+A LG++VQ LVT GP NL D L DP++ N L + FH
Sbjct: 302 KNGRLAMVAWLGFYVQALVTQKGPIDNLFDFLEDPLHQN-LFAYAFH 347
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 136/281 (48%), Gaps = 50/281 (17%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ + A ++S Q+LG + G + +R A+T V A W+
Sbjct: 3 IGSCAFAGGQISSLKPHTNQLLGVGA-----GVHGEARVTMRKATTKKVSVSASTSPWYG 57
Query: 61 SKQSL----------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
+ L SYL G PGDYG+D GLS DPE F + + L EVI+ R+A
Sbjct: 58 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWA 111
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 169
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 170 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 212
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLA 261
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLA
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLA 253
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 127/230 (55%), Gaps = 35/230 (15%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DRP + F+ + +YL G GDYG+D GLS DP+ + E EVI+ R
Sbjct: 31 GPDRPKFLGPFSEGDTPAYLTGEFAGDYGWDTAGLSADPQTFAKYREI------EVIHAR 84
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G I PE+L K G +P A+ WF+ G I G NY + +
Sbjct: 85 WAMLGALGCITPELLAKNG-VPFGEAV-WFKAGAQIFQDGGLNYLGNENLVHAQSILATL 142
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
+++ LMG AE R AN G+ G GF + L D YPGG F+PLGL D
Sbjct: 143 AVQVLLMGAAESYR----ANGGAPG-----GFGEDL----DSLYPGGA-FDPLGLADDPD 188
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP NL HL+DP NN
Sbjct: 189 TLAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPSGNNA 238
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 118/214 (55%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
+YL+G +PGDYG+DP GL PE K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 82 AYLNGEVPGDYGYDPFGLGKKPEDFA-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 135
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVL---EMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ P L V E+ L+G AE+ R +
Sbjct: 136 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVVAVIAEVVLLGGAEYYRIING-- 192
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL D K KE+KNGRLAM A+
Sbjct: 193 ---------LDLE-------DKLHPGGP-FDPLGLASDPDQAAILKAKEIKNGRLAMFAM 235
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 236 LGFFLQAYVTGEGPVENLSKHLSDPFGNNLLTVI 269
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 118/231 (51%), Gaps = 38/231 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 39 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHAR 92
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G + PE+L K G E WF+ G I G +Y +P +
Sbjct: 93 WAMLGALGCLTPELLAKNGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATL 150
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG E R N G G DP YPG F+PLGL D
Sbjct: 151 ACQVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPD 193
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLA+P NN
Sbjct: 194 TFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAF 244
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 120/213 (56%), Gaps = 32/213 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125
YL G +PGDYGFDP GLS K+ AY E+I+ R+AMLGA G + PE K
Sbjct: 79 EYLTGEVPGDYGFDPFGLSKKPAD----FDKYQAY-ELIHARWAMLGAAGFVIPEAFNKF 133
Query: 126 GLIPQETALAWFQTG-VIPPAGTYNYWAD--PYTLFVL---EMALMGFAEHRRFQDWANP 179
G A+ WF+TG ++ GT NY+ P L + E+ L+G AE+ R
Sbjct: 134 GAQCGPEAV-WFKTGALLLDGGTLNYFGANIPINLVLAVLAEVILVGGAEYYR------- 185
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
S+ LG ++ +PGGP F+PLGL KD + K+KE+KNGRLAM A+L
Sbjct: 186 -SINN---LGLDRL--------HPGGP-FDPLGLAKDPDNFALLKVKEIKNGRLAMFAML 232
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
G+F+Q TG GP +NL HL+DP NN+L+ +
Sbjct: 233 GFFIQAYATGEGPVENLTTHLSDPFGNNLLSVI 265
>gi|149242543|pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 103/177 (58%), Gaps = 16/177 (9%)
Query: 96 KWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY 155
+W E++NGR+AMLG G + PE+ G+I W+ AG Y+A
Sbjct: 5 RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII---NVPKWYA------AGKEEYFASSS 55
Query: 156 TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK 215
TLFV+E L + E RR+QD NPGS+ + F++Y +G+ YPGG +FNPL
Sbjct: 56 TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGG-IFNPLNFAP 112
Query: 216 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
++ K KE+ NGRLAMLA LG+ +Q VTG GP+ NLL H++DP +N ++ +L
Sbjct: 113 TLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 165
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/280 (35%), Positives = 136/280 (48%), Gaps = 36/280 (12%)
Query: 4 QALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFAS-- 61
QA+V+S+ S V+ + G + + + + AA G DRP + +
Sbjct: 16 QAVVASTQVSKVQVTEALFGKKKGTAKATPKKAAAPADGAAKW----YGPDRPKYLPTGL 71
Query: 62 ---KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
+Y++G L GDYG+DPLGL G G +E K+ Y EV++GR+AMLG VG +
Sbjct: 72 LDPADIPAYMNGELAGDYGYDPLGL----GNKGGVE-KYRPY-EVLHGRWAMLGVVGMLV 125
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWA---DPYTL---FVLEMALMGFAEHRR 172
PE L G + A+ W V+ WA +P L + E+A+ E+ R
Sbjct: 126 PEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALAVIFEVAVFFLIENYR 185
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 232
+Q + G DP YPGG F+PLGL D + K+KE+KNGR
Sbjct: 186 YQQ---------------DGPWGTGLDPLYPGGKYFDPLGLASDPSKADELKVKEIKNGR 230
Query: 233 LAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LAM+A LG+ VQ VT GPY N HLADP N LT L
Sbjct: 231 LAMMAFLGFVVQYFVTKEGPYANWSKHLADPFGYNFLTIL 270
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 136/272 (50%), Gaps = 38/272 (13%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT A+ S+ + R S G V++A + G DRP +
Sbjct: 1 MATSAIQQSAFAGQTALKQSNELVRKVGSFGGGRITMRRTVKSAPQS-IWYGPDRPKYLG 59
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S+Q+ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 60 PFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCV 113
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PEIL K G+ E WF+ G I G +Y +P ++ +++ LMGF
Sbjct: 114 FPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFV 171
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R P LG DP YPGG F+PLGL D + + K+KE+
Sbjct: 172 EGYRVG--GGP--------------LGEGLDPIYPGGA-FDPLGLADDPDAFAELKVKEI 214
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
KNGRLAM ++ G+FVQ +VTG GP +N L L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENSLITL 246
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 119/219 (54%), Gaps = 29/219 (13%)
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
++L G PGDYGFD GL DP + E+++ R+AML A+G + PE+L
Sbjct: 43 AHLTGEYPGDYGFDIAGLGRDPVAFANYFN------FEILHCRWAMLAALGVVVPELLDL 96
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLFVLEMALMGFAEHRRF 173
G++ W++ G G T +Y P + + + LM E+ R+
Sbjct: 97 FGVV-HFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYARY 155
Query: 174 QDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRL 233
G + YL GD YPGG LF+PLGL KD + +D K+KE+KNGRL
Sbjct: 156 --------CGIEALEPLGLYL--PGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRL 205
Query: 234 AMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
AM+A LG+++Q VTG GP QNL++HL+DP++NN+L+S
Sbjct: 206 AMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILSSF 244
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 145/291 (49%), Gaps = 33/291 (11%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVK-QGADRPLWF 59
M QAL + S+ A++ + P+G + KG + + K G DR L+
Sbjct: 1 MQIQALFKKTAASA--PAKKGTSSTKVVKPSGKATKGWLGGQGGAVNLDKWYGPDRVLFL 58
Query: 60 AS-----KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGA 113
S + +YL+G L GDYG+DPLGL D E + E E+++ R+AML A
Sbjct: 59 PSGLYDRSEVPAYLNGELAGDYGYDPLGLGKDTETVAKYREY------ELLHARWAMLAA 112
Query: 114 VGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP----------YTLFVLEM 162
G + PE L G WF+TG + GT NY+A P + + +E+
Sbjct: 113 AGILIPEGLQANG--ANIKGGVWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAIEV 170
Query: 163 ALMGFAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMK 221
LMG E R G G +G F+ + D YPGGP F+PLGL D + +
Sbjct: 171 GLMGAVEFYRRN---GTGPAGYSPGIGKFDSSVFEGLDSIYPGGP-FDPLGLADDPEVFQ 226
Query: 222 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ K+KE+KNGRLAM+++L + +Q VTG GPY N + H+ DP N+LT L
Sbjct: 227 ELKVKEIKNGRLAMVSVLAFAIQSYVTGEGPYTNWIKHVQDPFGYNLLTVL 277
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 123/237 (51%), Gaps = 39/237 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 39 GPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHAR 92
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G + PE+L K+G E WF+ G I G +Y +P +
Sbjct: 93 WAMLGALGCLTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATL 150
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
+++ LMG E R N G G DP YPG F+PLGL D
Sbjct: 151 AVQVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPD 193
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 274
+ + K+KE+KNG LAM ++ G+FVQ +VTG GP QNL DHLA+P VNN + KF
Sbjct: 194 TFAELKVKEIKNGALAMFSMFGFFVQAIVTGKGPVQNLDDHLANPGVNNAFAFATKF 250
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 123/233 (52%), Gaps = 31/233 (13%)
Query: 52 GADRPLWFASKQS--LSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRY 108
G RP W + +L G PGDYGFD GL DP + E+++ R+
Sbjct: 92 GGARPRWLGPLRYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFN------FEILHCRW 145
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTL 157
AML A+G + PE+L G++ W++ G G T +Y P +
Sbjct: 146 AMLAALGVVVPELLDLFGIV-HFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGIIVI 204
Query: 158 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 217
+ ++ LM E+ R+ G + YL GD YPGG LF+PLGL KD
Sbjct: 205 AICQVLLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGALFDPLGLSKDP 254
Query: 218 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
+ ++FK+KE+KNGRLAM+A +G+++Q VTG GP QNL +HL+DP++NN+L+
Sbjct: 255 VAFEEFKVKEIKNGRLAMVAWIGFYIQAAVTGKGPVQNLAEHLSDPLHNNILS 307
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 124/246 (50%), Gaps = 43/246 (17%)
Query: 42 RAASTPPVKQGADRPLWF-ASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLA 99
++AS GADRP + A +S SYL+G PGDYG+D GLS DPE + E
Sbjct: 58 KSASGASFWYGADRPGYLGAFTRSPSYLNGEFPGDYGWDTAGLSADPETFSRYREI---- 113
Query: 100 YGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG--VIPPAGTYNYWADP--- 154
EVI+ R+AMLGA+G + PE+L Q +AWF G + P G Y P
Sbjct: 114 --EVIHARWAMLGALGIVVPELL------DQTNHVAWFDAGATIFGPKGI-QYLGVPGLI 164
Query: 155 -----YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN 209
+++ LMG E R N G G D YPG F+
Sbjct: 165 NAKNIIATVAVQVILMGAIEGYR----VNGGPAGEGL------------DKVYPG-ESFD 207
Query: 210 PLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNV 268
PLGL D + + K+KE+KNGRLAM + G+FVQ +VTG GP NL DHLA+P VNN
Sbjct: 208 PLGLADDPDTFAELKVKEIKNGRLAMFSNFGFFVQAIVTGKGPIANLNDHLANPTVNNGF 267
Query: 269 LTSLKF 274
+ KF
Sbjct: 268 AAATKF 273
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 116/217 (53%), Gaps = 34/217 (15%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S + SYL+G PGDYG+D GLS DPE + E EVI+ R+AMLGA+G + P
Sbjct: 8 SSATPSYLNGEFPGDYGWDTAGLSADPETFARYREI------EVIHARWAMLGALGCLTP 61
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEH 170
E+L + G QE W++ G I + +Y P + +++ LMG AE
Sbjct: 62 ELLSQNGFTFQEPV--WWKAGAQILSSEGLDYLGKPNLVHAQSIVATLAVQVILMGSAEA 119
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R A PG G D YPGGP F+PL D ++ + K+KE+KN
Sbjct: 120 YRAAGSA-PGVDGL--------------DKLYPGGP-FDPLEFASDPDTLAELKVKEIKN 163
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
GRLAM ++ G+FVQ +VTG GP +NL DHLA P NN
Sbjct: 164 GRLAMFSMFGFFVQAIVTGKGPLENLNDHLASPYANN 200
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 117/213 (54%), Gaps = 33/213 (15%)
Query: 67 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125
YL G +PGDYG+DP GL PE K+ AY E+I+ R+AMLGA GA+ PE K
Sbjct: 87 YLTGEVPGDYGYDPFGLGKKPEDFA-----KYQAY-ELIHARWAMLGAAGAVIPEACNKF 140
Query: 126 GLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVL---EMALMGFAEHRRFQDWANP 179
G A+ WF+TG + G T +Y+ + P L V E+ L+G AE+ R +
Sbjct: 141 GANCGPEAV-WFKTGALLLDGNTLSYFGNSIPINLVVAVIAEVVLVGGAEYYRIING--- 196
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
L E D +PGGP F+PLGL D K+KE+KNGRLAM ++
Sbjct: 197 --------LDLE-------DKLHPGGP-FDPLGLASDPDQAAILKVKEIKNGRLAMFSMF 240
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 241 AFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 273
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 117/232 (50%), Gaps = 37/232 (15%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DR LW F+ SYL G PGDYG+D GLS DP + E EVI+ R
Sbjct: 130 GPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRET------EVIHAR 183
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLF 158
+AMLG +G + PE+L K +P + WF+ G I G +Y +P +
Sbjct: 184 WAMLGTLGCVTPELLAKYSGVPIAEPV-WFKAGSQIFAEGGLDYLGNPSLVHAQSILAIL 242
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG AE R N G G D PGG F+PLGL D
Sbjct: 243 ACQVILMGGAEAYRV----NGGPAGEGL------------DAINPGGA-FDPLGLADDPD 285
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
+ + K+KE+KNGRLAM ++LG++VQ + TG GP +N +H+ADP N LT
Sbjct: 286 TFAELKVKEIKNGRLAMFSMLGFYVQAISTGKGPVENWAEHIADPSGVNGLT 337
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 123/237 (51%), Gaps = 39/237 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 39 GPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHAR 92
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G + PE+L K G+ Q WF+ G I G NY +P +
Sbjct: 93 WAMLGALGIVTPELLQKNGV--QFGEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATL 150
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
+++ L+G E R N G G DP YPG F+PLGL D
Sbjct: 151 AVQVVLLGLVEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPD 193
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 274
+ + K+KE+KNGRLAM + G+FVQ +VTG GP QNL DHL++P VNN + K+
Sbjct: 194 TFAELKVKEIKNGRLAMFSSFGFFVQAIVTGKGPIQNLDDHLSNPGVNNAFAFATKY 250
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 117/232 (50%), Gaps = 37/232 (15%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DR LW F+ SYL G PGDYG+D GLS DP + E EVI+ R
Sbjct: 129 GPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRET------EVIHAR 182
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLF 158
+AMLG +G + PE+L K +P + WF+ G I G +Y +P +
Sbjct: 183 WAMLGTLGCVTPELLAKYSGVPIAEPV-WFKAGSQIFAEGGLDYLGNPSLVHAQSILAIL 241
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG AE R N G G D PGG F+PLGL D
Sbjct: 242 ACQVILMGGAEAYRV----NGGPAGEGL------------DAINPGGA-FDPLGLADDPD 284
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
+ + K+KE+KNGRLAM ++LG++VQ + TG GP +N +H+ADP N LT
Sbjct: 285 TFAELKVKEIKNGRLAMFSMLGFYVQAISTGKGPVENWAEHIADPSGVNGLT 336
>gi|404503320|emb|CCJ09778.1| putative chlorophyll a/b binding protein, partial [Hirudo
medicinalis]
Length = 67
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 62/66 (93%)
Query: 131 ETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF 190
ETAL WF+TGVIPPAGTYNYWAD YTLFV E+AL+GFAEHRRFQDWANPGSMG+QYFLG
Sbjct: 2 ETALPWFKTGVIPPAGTYNYWADSYTLFVFELALVGFAEHRRFQDWANPGSMGKQYFLGL 61
Query: 191 EKYLGG 196
EK+LGG
Sbjct: 62 EKWLGG 67
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 122/233 (52%), Gaps = 33/233 (14%)
Query: 52 GADRPLWF-----ASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVIN 105
G DR ++ A + YL G +PGDYG+DP GLS PE ++ AY E+I+
Sbjct: 8 GPDRRIYLPEGLLAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDFD-----RYQAY-ELIH 61
Query: 106 GRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTL-----FVL 160
R+AMLGA G + PE K G + A+ W ++ + Y+ L +
Sbjct: 62 ARWAMLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPLNLAAAVIA 121
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
E+ L+G AE+ R + + LG D +PGG F+PLGL KD
Sbjct: 122 EVILVGGAEYYRSTN---------------KSPLGSDLDRLHPGGA-FDPLGLAKDPDQF 165
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
K+KE+KNGRLAM ++LG+FVQ VTG GP +NL HL+DP NN+LT ++
Sbjct: 166 ALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLSAHLSDPFGNNLLTVIQ 218
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 116/207 (56%), Gaps = 35/207 (16%)
Query: 71 SLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIP 129
PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+
Sbjct: 1 EFPGDYGWDTAGLSADPET---FSKNREL---EVIHSRWAMLGALGCVFPELLARNGVKF 54
Query: 130 QETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPG 180
E WF+ G I G +Y +P T++ ++ LMG E R P
Sbjct: 55 GEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILTVWATQVILMGAVEGYRIA--GGP- 109
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
LG DP YPGG F+PLGL + ++ + K+KE+KNGRLAM ++ G
Sbjct: 110 -------------LGEVVDPLYPGGS-FDPLGLAEIPEAFAELKVKELKNGRLAMFSMFG 155
Query: 241 YFVQGLVTGVGPYQNLLDHLADPVNNN 267
+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 156 FFVQAIVTGKGPIENLADHLADPVNNN 182
>gi|303324979|pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 103/190 (54%), Gaps = 18/190 (9%)
Query: 84 SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIP 143
SDPE +W E+++ R+AMLGA G PE L K G++ +W+
Sbjct: 1 SDPESL------RWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL---NTPSWYT----- 46
Query: 144 PAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYP 203
AG Y+ D TLF++E+ +G+AE RR+ D NPG + K G D YP
Sbjct: 47 -AGEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGT--DVGYP 103
Query: 204 GGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLAD 262
GG F+PLG G + +K+ + KE+KNGRLAMLA++G + Q + TG GP NL HLAD
Sbjct: 104 GGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 163
Query: 263 PVNNNVLTSL 272
P + + +
Sbjct: 164 PGHATIFAAF 173
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 117/231 (50%), Gaps = 37/231 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DR LW F+ SYL G PGDYG+D GLS DP + E EVI+ R
Sbjct: 114 GPDRALWLGPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRET------EVIHAR 167
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLF 158
+AMLGA+G + PE+L K +P + WF+ G I G +Y +P +
Sbjct: 168 WAMLGALGCVTPELLSKYSGVPIAEPV-WFKAGSQIFAEGGLDYLGNPSLIHAQSILAIL 226
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG AE R N G G D PGG F+PLGL D
Sbjct: 227 ACQVVLMGGAEAYRV----NGGPAGEGL------------DAINPGGA-FDPLGLADDPD 269
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+ + K+KE+KNGRLAM ++LG++VQ + TG GP +N +H+ADP N L
Sbjct: 270 TFAELKVKEIKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADPSGVNGL 320
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 130/262 (49%), Gaps = 46/262 (17%)
Query: 26 SAQSPTGSSRKGSFVVRAASTPPVK----QGADRPLW---FASKQSLSYLDGSLPGDYGF 78
SA+ P +R+G+ A+ PP G +R W ++ + +Y PGDYG+
Sbjct: 15 SARPP---ARRGTGKTAASRPPPAPGIEFYGPNRAKWLGPYSENATPAYRLAKFPGDYGW 71
Query: 79 DPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWF 137
D GLS DPE + E E+I+ R+AMLGA+G I PE+L K+G Q WF
Sbjct: 72 DTAGLSADPETFKRYREL------ELIHARWAMLGALGCITPELLAKSGT--QFGEAVWF 123
Query: 138 QTGV-IPPAGTYNYWADPYTLFV---------LEMALMGFAEHRRFQDWANPGSMGRQYF 187
+ G I G +Y +P + ++ LMG E R N G G
Sbjct: 124 KAGAQIFSEGGLDYLGNPSLVHAQNIRRHPGRFKVILMGLVEGYR----VNGGPAGEGL- 178
Query: 188 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
DP YPG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +V
Sbjct: 179 -----------DPLYPGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIV 226
Query: 248 TGVGPYQNLLDHLADPVNNNVL 269
TG GP QNL DHL++P NN
Sbjct: 227 TGKGPIQNLDDHLSNPTVNNAF 248
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 125/237 (52%), Gaps = 39/237 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 30 GPNRAKWLGPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYREL------ELIHAR 83
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G + PE+L K G +P A+ WF+ G I G NY +P +
Sbjct: 84 WAMLGALGIVTPELLAKNG-VPFGEAV-WFKAGAQIFQEGGLNYLGNPSLIHAQNIVATL 141
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
+++ L+G E R N G G DP YPG F+PLGL D
Sbjct: 142 AVQVILLGLVEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPD 184
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 274
+ + K+KE+KNGRLAM + G+FVQ +VTG GP QNL DHL++P VNN + K+
Sbjct: 185 TFAELKVKEIKNGRLAMFSSFGFFVQAIVTGKGPIQNLDDHLSNPGVNNAFAFATKY 241
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 129/266 (48%), Gaps = 37/266 (13%)
Query: 9 SSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQG---ADRPLWFASKQSL 65
++L + +R ILG+ A +R PV+Q A+R LW +
Sbjct: 2 AALLACNGLSRPILGSPLAARQVSRAR------------PVRQTVVRAERALWLPGGDAP 49
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
++LDGSLPGD+GFDPLGL +DPE W A E ++ R+AML G E++
Sbjct: 50 AHLDGSLPGDFGFDPLGLGADPERLA------WFAESERVHARWAMLAVAGIAVQEVV-- 101
Query: 125 AGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGR 184
+ W++ + P N A L E+ M F E RR D+ NPGS +
Sbjct: 102 ------RPDVFWYEAALKSPMPFGNSPAAILGLVAFELFAMHFVEVRRAYDFKNPGSQDQ 155
Query: 185 QYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 244
K + YPGG +F P+ G + + KLKE+KNGRLAMLA G+ +Q
Sbjct: 156 DPIFSNNKL--PKHEVGYPGG-IFAPVIPG----DLAELKLKEIKNGRLAMLAFAGFVMQ 208
Query: 245 GLVTGVGPYQNLLDHLADPVNNNVLT 270
VTG GP +L DHL++P+ + +
Sbjct: 209 AQVTGKGPLASLGDHLSNPIGTTIFS 234
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 131/274 (47%), Gaps = 50/274 (18%)
Query: 6 LVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSL 65
+ +++L SS +A L + S + SFVV AS+ AD W +
Sbjct: 1 MAANTLMSSAISAFPSLLSSSKSRFAAAVPLSSFVVTNASSSRFSMSAD---WMPGQPRP 57
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YLDGS PGD+GFDPL L + PE F E E+I+ R+AML G + PE LG
Sbjct: 58 PYLDGSAPGDFGFDPLRLGEVPENLERFKE------SELIHCRWAMLAVPGILVPEALGL 111
Query: 125 AGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEHRRFQDWAN 178
+ A W P G Y +P T+ +E + F EH+R
Sbjct: 112 GNWV---KAQEWAAV----PGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQR------ 158
Query: 179 PGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
SM + DP YPGG F+PLG KD K+ ++K+KE+KNGRLA+
Sbjct: 159 --SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKTFHEYKVKEIKNGRLAL 201
Query: 236 LAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 202 LAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNI 235
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 113/206 (54%), Gaps = 35/206 (16%)
Query: 72 LPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQ 130
PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L K G+
Sbjct: 3 FPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAKNGVKFG 56
Query: 131 ETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGS 181
E WF+ G I G +Y +P ++ ++ LMG E R G
Sbjct: 57 EAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYR----VGGGP 110
Query: 182 MGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGY 241
+G DP YPGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+
Sbjct: 111 LGEGL------------DPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 157
Query: 242 FVQGLVTGVGPYQNLLDHLADPVNNN 267
FVQ +VTG GP +NL DHLADP NN
Sbjct: 158 FVQAIVTGKGPIENLYDHLADPTANN 183
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 136/266 (51%), Gaps = 37/266 (13%)
Query: 14 SVETARQILGARSAQSPTGSSRKGSFVVRAASTP-PVKQGADRPLWFA--SKQSLSYLDG 70
SV +A+ +G + A +S + + + S P V G DRP + S + SYL G
Sbjct: 2 SVVSAKTFVGTQVASKKMVTSMRRT--QKKGSAPDSVWYGPDRPQFLGPFSGDTPSYLTG 59
Query: 71 SLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIP 129
PGDYG+D GLS DPE + E E+I+ R+AMLGA+G + PEIL K G +
Sbjct: 60 EFPGDYGWDTAGLSADPETFRRYREL------ELIHARWAMLGALGCVTPEILSKYGGVS 113
Query: 130 QETALAW------FQTGVIPPAGTYNYWADPYTLFVL--EMALMGFAEHRRFQDWANPGS 181
++ + FQ G + G N L +L ++ LMG E R N G
Sbjct: 114 FGESVWFKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYR----VNGGP 169
Query: 182 MGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGY 241
+G DP YPG F+PLGL D + + K+KE+KNGRLAM ++ G+
Sbjct: 170 LGEGL------------DPLYPGDK-FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGF 216
Query: 242 FVQGLVTGVGPYQNLLDHLADPVNNN 267
FVQ +VTG GP +N +H+ADP + N
Sbjct: 217 FVQAVVTGKGPIENWAEHVADPFSVN 242
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 118/231 (51%), Gaps = 38/231 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 38 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHAR 91
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV------- 159
+AMLGA+G PE+L K+G E WF+ G I G +Y +P +
Sbjct: 92 WAMLGALGCQTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATS 149
Query: 160 -LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
+++ LMG E R N G G DP YPG F+PLGL D
Sbjct: 150 AVQVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPD 192
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+ + K+KE+KNGRLA ++ G+FVQ +VTG GP QNL DHLA+P NN
Sbjct: 193 TFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAF 243
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 124/234 (52%), Gaps = 38/234 (16%)
Query: 40 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPK 96
V +AST P G DR L+ S + SYL G PGDYG+D GLS DPE F + +
Sbjct: 46 VSASASTSPW-YGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNR 101
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP- 154
L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 102 EL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPS 156
Query: 155 -------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
++ ++ LMG E R P LG DP YPGG
Sbjct: 157 LVHAQSILAIWACQVILMGAVEGYRIA--GGP--------------LGEITDPIYPGGS- 199
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLA 261
F+PLGL D + + K+KE+KNGRLAM ++ G+F Q +VTG GP +NL DHLA
Sbjct: 200 FDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFXQAIVTGKGPIENLADHLA 253
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 128/277 (46%), Gaps = 54/277 (19%)
Query: 1 MATQALVSSSLTSSVE-TARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
MA LV++++ ++ T + + +P + GS V +A W
Sbjct: 5 MACSQLVAAAVAPTLAGTQKSKFFGSAITTPGAAFSNGSRVSMSAE------------WL 52
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
+ +YLDGS PGD+GFDPLGL + P+ F E E+I+ R+AML G +
Sbjct: 53 PGQPRPAYLDGSAPGDFGFDPLGLGEVPDNLERFKE------SELIHCRWAMLAVPGCLI 106
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEHRR 172
PE LG + A W T P G Y P + +E + F E RR
Sbjct: 107 PEALGLGNWV---EAQQWAAT----PGGQATYLGTPVPWGTLPVIIAIEFVAIAFVESRR 159
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 232
P + R+Y PGG F+PLG KD K ++FKLKEVKNGR
Sbjct: 160 I---GVPSAEKRKY----------------PGG-AFDPLGFSKDPKKFEEFKLKEVKNGR 199
Query: 233 LAMLAILGYFVQGLV-TGVGPYQNLLDHLADPVNNNV 268
LA+LA LG+ Q G GP QNL HLADP +NN+
Sbjct: 200 LALLAFLGFCAQAAAYPGTGPLQNLATHLADPWHNNI 236
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 123/233 (52%), Gaps = 32/233 (13%)
Query: 52 GADRPLWF-----ASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVIN 105
G DR ++ A + +YL G +PGDYG+DP GLS PE ++ AY E+I+
Sbjct: 50 GPDRRIYLPEGLLAKDEIPAYLTGEVPGDYGYDPFGLSKKPEDFD-----RYQAY-ELIH 103
Query: 106 GRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD--PYTL---FVL 160
R+AMLGA G + PE K G + A+ W ++ + Y+ P L +
Sbjct: 104 ARWAMLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPINLAAAVIA 163
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
E+ L+G AE+ R N G Q D +PGG F+PLGL KD
Sbjct: 164 EVILVGGAEYYRS---TNKDVYGLQDL-----------DRLHPGGA-FDPLGLAKDPDQF 208
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
K+KE+KNGRLAM ++LG+FVQ VTG GP +NL HL+DP NN+LT ++
Sbjct: 209 ALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVIQ 261
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 124/240 (51%), Gaps = 35/240 (14%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGG 91
S+R G+ VVRA +R LW S YLDG+L GDYGFDP+GL ++PE
Sbjct: 24 SARAGNVVVRA----------ERSLWAPGVASPKYLDGNLAGDYGFDPMGLGANPE---- 69
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYW 151
W E+ N R+AMLG G ILG+ + P++ W+ G+ P ++
Sbjct: 70 --RLTWYRQAELQNARWAMLGVAG-----ILGQEIINPEQW---WYSAGM--PENLPSFD 117
Query: 152 ADPYTL---FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLF 208
+ + E LM F E RR+QD S+ F K + + YPGGP F
Sbjct: 118 GNKVNMGGILAWEFLLMHFVEVRRWQDIRKKDSVNADPFNPNLKV--PNPEMGYPGGP-F 174
Query: 209 NPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
+PLG K + K+ + KE+KNGRLAM+A + + +Q TG GP NL DHLA P +NNV
Sbjct: 175 DPLGFSKG--NFKEVQTKEIKNGRLAMVAFVAFTIQAQATGKGPLANLTDHLASPFSNNV 232
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 47/223 (21%)
Query: 53 ADRPLWFAS-KQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAM 110
A+R LW ++ ++LDGSLPGD+G+DPLGL+ DP + E EV+NGR+AM
Sbjct: 36 AERKLWAPGLVKAPAHLDGSLPGDFGYDPLGLAKDPVSLARYRE------AEVMNGRWAM 89
Query: 111 LGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY---TLFVLEMALMGF 167
LG G +APE++G+ + +A W TG P TY PY T+ +E + +
Sbjct: 90 LGVAGMLAPELVGQGTWL---SAQDWAVTGGKP---TYLGNELPYGFGTVLAVEFFCLSW 143
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPA---YPGGPLFNPLGLGKDEKSMKDFK 224
E R G EK DP YPGG F+PLG GKDE + K
Sbjct: 144 VEISR----------------GLEK------DPMKRIYPGGA-FDPLGFGKDEVN----K 176
Query: 225 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KE++NGRLAM+A +G + QG+ G GP NL+DHLADP++NN
Sbjct: 177 VKELRNGRLAMVAFVGMWCQGIHVGGGPVSNLMDHLADPLHNN 219
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 123/259 (47%), Gaps = 51/259 (19%)
Query: 22 LGARSAQSPTGSS-RKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDP 80
+G S +P+ S R F A ++ V A+ W + ++LDGS PGD+GFDP
Sbjct: 15 VGVPSLLAPSSRSGRLAPFCANATTSGRVTMSAE---WMPGQPRPAHLDGSSPGDFGFDP 71
Query: 81 LGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQT 139
LGL+ PE F E EV + R+AML G + PE LG + A W
Sbjct: 72 LGLATVPENFERFKE------SEVYHCRWAMLAVPGILVPEALGLGNWV---KAQEWAAV 122
Query: 140 GVIPPAGTYNY------WADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKY 193
P G Y W T+ V+E + FAEH+R +
Sbjct: 123 ----PGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTME------------------ 160
Query: 194 LGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTG 249
DP YPGG F+PLG KD +++KLKE+KNGRLAMLA +G+ V Q G
Sbjct: 161 ----KDPEKKKYPGG-AFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPG 215
Query: 250 VGPYQNLLDHLADPVNNNV 268
GP +NL HLADP +NN+
Sbjct: 216 TGPLENLASHLADPWHNNI 234
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 125/247 (50%), Gaps = 39/247 (15%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGT 89
S+R V RAA G DR W S + SYL G PGDYG+D GLS DPE
Sbjct: 20 SARGQKQVTRAAVE---FYGPDRAKWLGPFSDDTPSYLTGEFPGDYGWDTAGLSADPETF 76
Query: 90 GGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTY 148
+ E E+I+ R+AMLGA+G + PE+L K + A+ WF+ G I G
Sbjct: 77 ASYREL------ELIHARWAMLGALGCVTPELLSKYAGVEFGEAV-WFKAGAQIFADGGL 129
Query: 149 NYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
+Y + + ++ LMG AE R N G +G D
Sbjct: 130 DYLGNSSLVHAQSILAILGCQVVLMGGAEAFR----VNGGPLGEDL------------DK 173
Query: 201 AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
+PGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +N +H+
Sbjct: 174 LHPGGA-FDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVENWAEHI 232
Query: 261 ADPVNNN 267
ADP +N
Sbjct: 233 ADPSGSN 239
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 125/256 (48%), Gaps = 45/256 (17%)
Query: 22 LGARSAQSPTGSS-RKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDP 80
+G S +P+ S R F A ++ V A+ W + ++LDGS PGD+GFDP
Sbjct: 15 VGVPSLLAPSSRSGRLAPFCANATTSGRVTMSAE---WMPGQPRPAHLDGSSPGDFGFDP 71
Query: 81 LGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQT 139
LGL+ PE F E EV + R+AML G + PE LG + A W
Sbjct: 72 LGLATVPENFERFKE------SEVYHCRWAMLAVPGILVPEALGLGNWV---KAQEWAAV 122
Query: 140 GVIPPAGTYNY------WADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKY 193
P G Y W T+ V+E + FAEH+R + +P EK
Sbjct: 123 ----PGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTME-KDP-----------EKK 166
Query: 194 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGP 252
YPGG F+PLG KD +++KLKE+KNGRLAMLA +G+ V Q G GP
Sbjct: 167 -------KYPGG-AFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGP 218
Query: 253 YQNLLDHLADPVNNNV 268
+NL HLADP +NN+
Sbjct: 219 LENLASHLADPWHNNI 234
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 124/237 (52%), Gaps = 35/237 (14%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DRP + F+ + YL G PGDYG+D GLS DP + E E+I+ R
Sbjct: 30 GPDRPKFLGPFSEGDTPEYLTGEFPGDYGWDTAGLSADPATFARYREI------ELIHAR 83
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------F 158
+AMLGA+G + PE+L K G P WF+ G I NY +P +
Sbjct: 84 WAMLGALGCVVPELLAKNG-TPLPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATL 142
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ +MG AE RF A PG +L G+ D YPG F+P+GL +D
Sbjct: 143 AFQVVVMGAAESFRFNGGA-PGG-----------FLEGN-DRLYPGDQ-FDPMGLAEDPD 188
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP-VNNNVLTSLKF 274
+ + K+KE+KNGRLAM ++ G+FVQ +VTG GP NL HLADP VNN + KF
Sbjct: 189 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLADPSVNNAWAAATKF 245
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 141/280 (50%), Gaps = 44/280 (15%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA S+ L ++V Q + A+ + + R ++A+ G DR +
Sbjct: 1 MAAALASSTFLGAAVVAPAQKVEAKKINTVVEARR-----TKSATPDSPFYGPDRVTFLG 55
Query: 61 SKQSL-SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
+ SYL G PGDYG+D +GLS DPE + E E+++ R+AMLG +G
Sbjct: 56 PFTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREI------ELMHARWAMLGTLGCFL 109
Query: 119 PEILGK-AGLIPQETALAWFQTG-VIPPAGTYNYWADPY---------TLFVLEMALMGF 167
PE L K +G+ E+ WF+ G I G +Y +P T+F+ + LMG
Sbjct: 110 PEALEKYSGINFGESV--WFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFI-QALLMGL 166
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R P LG +GD YPGG F+PLGLG D ++ + K+KE
Sbjct: 167 VEGYRVG--GGP--------------LGEAGDKMYPGGS-FDPLGLGDDPDTLAELKVKE 209
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KNGRLAM ++ GYF+Q +VTG GP +NL HLADP NN
Sbjct: 210 IKNGRLAMFSMFGYFIQAIVTGKGPVENLDAHLADPFVNN 249
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 122/233 (52%), Gaps = 34/233 (14%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGR 107
G +R W ++ + SYL G LPGDYG+D GL +DP + E E+I+GR
Sbjct: 470 GPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYRE------AELIHGR 523
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLF 158
+AMLGAVG PE L + + Q WF+ G I A NY+ P +
Sbjct: 524 WAMLGAVGCFLPEYLNRFFGV-QFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAIL 582
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG E R + A PG G D YPGGP F+PLGL D
Sbjct: 583 ATQVLLMGAVEAYRAGNTA-PGQFGEDL------------DRLYPGGP-FDPLGLADDPD 628
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
+ + K+KE+KNGRLAM+A+LG++ Q +VTG GP +N L HL DP +N LT+
Sbjct: 629 TFAELKVKEIKNGRLAMMAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTA 681
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 115/216 (53%), Gaps = 31/216 (14%)
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G LPGDYG+D GL +DP + E E+I+GR+AMLGAVG PE L +
Sbjct: 3 SYLTGELPGDYGWDTAGLGADPFTLQRYRE------AELIHGRWAMLGAVGCFLPEYLNR 56
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
+ Q WF+ G I A NY+ P + ++ LMG E R +
Sbjct: 57 FFGV-QFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYRAGN 115
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
A PG G D YPGGP F+PLGL D + + K+KE+KNGRLAM
Sbjct: 116 TA-PGQFGEDL------------DRLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAM 161
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
+A+LG++ Q +VTG GP +N L HL DP +N LT+
Sbjct: 162 VAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTA 197
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 139/283 (49%), Gaps = 49/283 (17%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLW--- 58
A L ++ +T T + A +++P G S+ G DR W
Sbjct: 191 AHNGLTAALVTQFAPTPVAMFAAGGSKAPAGLSQW--------------YGPDRSKWLGP 236
Query: 59 FASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
++ + YL+G LPGDYG+D GL +DP + E E+I+GR+AMLGA+G +
Sbjct: 237 YSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYRE------AELIHGRWAMLGALGVV 290
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY------TLFVL--EMALMGFA 168
PE L + IP + WF+ G I G +Y D L +L ++ LMG A
Sbjct: 291 FPEYLSRNFDIPIAEPV-WFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMGAA 349
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R + G+ G+ D YPGGP F+PLGL D ++ + K+KE+
Sbjct: 350 EAYRTGN--GLGNFGKDL------------DSLYPGGP-FDPLGLANDPDTLAELKVKEI 394
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
KNGRLAM A+ G++VQ +VTG P +NL HLA P N L +
Sbjct: 395 KNGRLAMFAMFGFYVQAIVTGESPLENLSAHLASPFTVNGLNA 437
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 125/249 (50%), Gaps = 44/249 (17%)
Query: 31 TGSSRKGSFVVRAASTPPVKQGADRPL---WFASKQSLSYLDGSLPGDYGFDPLGLSD-P 86
+G+ R F +S V G+ + W + +YLDGS PGD+GFDPLGL++ P
Sbjct: 18 SGAQRTKFFSGHVSSLSTVSNGSRVSMSSEWMPGQPRPAYLDGSSPGDFGFDPLGLAEVP 77
Query: 87 EGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG 146
E + E E+I+ R+AML G + PE LG + +A W T P G
Sbjct: 78 ENFARYKE------SELIHCRWAMLAVPGVLIPEALGLGNWV---SAQQWAAT----PGG 124
Query: 147 TYNYWADPY------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP 200
Y +P + +E + F E +R ++ P R+Y
Sbjct: 125 QATYLGNPVPWGTLPIILAIEFLAVAFVEAKRGEE---PDHEKRKY-------------- 167
Query: 201 AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV-TGVGPYQNLLDH 259
PGGP F+PLG KD K ++++KLKE+KNGRLA+LA LG+ VQ + G GP +NL H
Sbjct: 168 --PGGP-FDPLGFAKDPKKLEEYKLKELKNGRLALLAFLGFSVQAIAYPGTGPLENLASH 224
Query: 260 LADPVNNNV 268
L++P NN+
Sbjct: 225 LSNPWANNI 233
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 118/214 (55%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GL PE K+ A+ E+I+ R+AMLGA G I PE L K
Sbjct: 89 EYLNGEVPGDYGYDPFGLGKKPEDFA-----KYQAF-ELIHARWAMLGAAGFIIPEALNK 142
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLFVLEMALMGF-----AEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + + ++ + AE+ R +
Sbjct: 143 FGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLILAVVAEVVLVGGAEYYRITN--- 198
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
G ++ D +PGGP F+PLGL D K+KE+KNGRLAM ++
Sbjct: 199 ----GLEF-----------DDKLHPGGP-FDPLGLATDPDQAALLKVKEIKNGRLAMFSM 242
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP++NL HL+DP NN+LT +
Sbjct: 243 LGFFIQAYVTGEGPFENLCAHLSDPFGNNLLTVI 276
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 118/232 (50%), Gaps = 32/232 (13%)
Query: 52 GADRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVING 106
G DRP + + +Y++G L GDYG+DPLGL G G +E K+ Y EV++G
Sbjct: 67 GPDRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGL----GNKGGVE-KYRPY-EVLHG 120
Query: 107 RYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWA---DPYTL---FVL 160
R+AMLG VG + PE L G + A+ W V+ WA +P L +
Sbjct: 121 RWAMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALAVIF 180
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
E+A+ E+ R+Q + G DP YPGG F+PLGL D
Sbjct: 181 EVAVFFLIENYRYQQ---------------DGPWGTGLDPLYPGGKYFDPLGLASDPSKA 225
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ K+KE+KNGRLAM+A LG+ VQ VT GPY N HLADP N LT L
Sbjct: 226 DELKVKEIKNGRLAMMAFLGFVVQYFVTKEGPYANWSKHLADPFGYNFLTIL 277
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 119/228 (52%), Gaps = 39/228 (17%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DR LW ++ SYL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 10 GPDRALWLGPYSDGAVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQ------ELIHAR 63
Query: 108 YAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTL 157
+AMLGA+G + PEIL K AG+ E+ WF+ G I G +Y +P +
Sbjct: 64 WAMLGALGCVTPEILSKYAGVSFGESV--WFKAGSQIFQEGGLDYLGNPSLVHAQSILAI 121
Query: 158 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 217
++ LMG E R N G +G D +PG F+PLGL D
Sbjct: 122 LGCQVVLMGLIEAYR----VNGGPLGEGL------------DTLHPGES-FDPLGLADDP 164
Query: 218 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVN 265
+ + K+KE+KNGRLAM ++ G++VQ +VTG GP +N DH+ADP N
Sbjct: 165 DTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWADHVADPFN 212
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 116/214 (54%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GLS PE K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 86 EYLNGEVPGDYGYDPFGLSKKPEDFS-----KYQAY-ELIHARWAMLGAAGFIIPEACNK 139
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLFVLEMALM-----GFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + + ++ G AE+ R +
Sbjct: 140 FGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIING-- 196
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL D K+KE+KNGRLAM ++
Sbjct: 197 ---------LDLE-------DKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSM 239
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVI 273
>gi|388505428|gb|AFK40780.1| unknown [Medicago truncatula]
Length = 230
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 105/185 (56%), Gaps = 19/185 (10%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DRPLWF +LDGSLPGD+GFDPLGL SDPE KWLA E+++ R+AMLG
Sbjct: 61 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELL------KWLAQAELMHARWAMLG 114
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
G + PEIL K G + +W+ AG+ Y+ADP TLF++++ALMG+ E RR
Sbjct: 115 VSGILIPEILEKIGYV---KNFSWYN------AGSVEYFADPTTLFIVQLALMGWVEGRR 165
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEVKNG 231
+ D NPGS+ + L D YPGG F+P+ G+ + + + K ++ G
Sbjct: 166 WADIVNPGSVDIEPKL--PNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKRLRMG 223
Query: 232 RLAML 236
L L
Sbjct: 224 DLLCL 228
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL-- 256
D + PG F+PLGLG D + +K E+ + R AML + G + ++ +G +N
Sbjct: 76 DGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSW 135
Query: 257 -----LDHLADPVN 265
+++ ADP
Sbjct: 136 YNAGSVEYFADPTT 149
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 117/214 (54%), Gaps = 38/214 (17%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D +GLS DPE + E E+++ R+AMLG +G PE L K
Sbjct: 62 SYLTGEYPGDYGWDTVGLSADPETFAAYREI------ELMHARWAMLGTLGCFLPEALEK 115
Query: 125 -AGLIPQETALAWFQTG-VIPPAGTYNYWADPY---------TLFVLEMALMGFAEHRRF 173
+G+ E+ WF+ G I G +Y +P T+F+ + LMG E R
Sbjct: 116 YSGINFGESV--WFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFI-QALLMGLVEGYRV 172
Query: 174 QDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRL 233
P LG +GD YPGG F+PLGLG D ++ + K+KE+KNGRL
Sbjct: 173 G--GGP--------------LGEAGDKMYPGGS-FDPLGLGDDPDTLAELKVKEIKNGRL 215
Query: 234 AMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
AM ++ GYF+Q +VTG GP +NL HLADP NN
Sbjct: 216 AMFSMFGYFIQAIVTGKGPVENLDAHLADPFVNN 249
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 116/214 (54%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GLS PE K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 86 DYLNGEVPGDYGYDPFGLSKKPEDFS-----KYQAY-ELIHARWAMLGAAGFIIPEACNK 139
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLFVLEMALM-----GFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + + ++ G AE+ R +
Sbjct: 140 FGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIING-- 196
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL D K+KE+KNGRLAM ++
Sbjct: 197 ---------LDLE-------DKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSM 239
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVI 273
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 111/204 (54%), Gaps = 35/204 (17%)
Query: 74 GDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQET 132
GDYG+D GLS DPE F + L EVI+ R+AMLGA+G + PEIL K G+ E
Sbjct: 1 GDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILAKNGVKFGEA 54
Query: 133 ALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMG 183
WF+ G I G +Y +P ++ ++ LMGF E R G +G
Sbjct: 55 V--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR----VGGGPLG 108
Query: 184 RQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV 243
D YPGG F+PLGL D + + K+KE+KNGRLAM ++ G+FV
Sbjct: 109 EGL------------DKVYPGGA-FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFV 155
Query: 244 QGLVTGVGPYQNLLDHLADPVNNN 267
Q +VTG GP +NL DH+ADPV NN
Sbjct: 156 QAIVTGKGPIENLFDHVADPVANN 179
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 117/232 (50%), Gaps = 37/232 (15%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DR W ++ SYL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 35 GPDRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRET------ELIHAR 88
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLF 158
+AMLGA+G + PEIL K G ++ WF+ G I G +Y P +
Sbjct: 89 WAMLGALGCVTPEILAKYGGTSFGESV-WFRAGAQIFKDGGLDYLGSPALIHAQSIGAIV 147
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
+ ++ LMG E R N G G DP YPG F+PLGL D
Sbjct: 148 ISQVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPD 190
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
+ + K+KE+KNGRLAM ++ G++VQ +VTG GP +N +H+ADP N +
Sbjct: 191 TFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHIADPFTANAFS 242
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 119/214 (55%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GLS PE K+ AY E+I+ R+AMLGA G + PE K
Sbjct: 88 EYLNGEVPGDYGYDPFGLSKKPEDFA-----KYQAY-ELIHARWAMLGAAGFVIPEAFNK 141
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWADPYTL-----FVLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + V E+ L+G AE+ R +
Sbjct: 142 FGADCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVVLLGGAEYYRITNG-- 198
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL KD K+KE+KNGRLAM A+
Sbjct: 199 ---------LDLE-------DKLHPGGP-FDPLGLAKDPDQAAILKVKEIKNGRLAMFAM 241
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 242 LGFFIQAYVTGKGPVENLAAHLSDPFGNNLLTVI 275
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 118/246 (47%), Gaps = 50/246 (20%)
Query: 34 SRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGF 92
S + F A ++ V A+ W + ++LDGS PGD+GFDPLGL+ PE F
Sbjct: 28 SSRLPFCANATTSGRVTMSAE---WMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERF 84
Query: 93 IEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWA 152
E EV + R+AML G + PE LG + A W P G Y
Sbjct: 85 KE------SEVYHCRWAMLAVPGILVPEALGLGNWV---KAQEWAAV----PGGQATYLG 131
Query: 153 DPY------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYP 203
+P T+ V+E + FAEH+R + DP YP
Sbjct: 132 NPVPWGSLPTILVIEFVAIAFAEHQRTME----------------------KDPEKKKYP 169
Query: 204 GGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLAD 262
GG F+PLG KD +++KLKE+KNGRLAMLA +G+ V Q G GP +NL HLAD
Sbjct: 170 GG-AFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLAD 228
Query: 263 PVNNNV 268
P +NN+
Sbjct: 229 PWHNNI 234
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 122/233 (52%), Gaps = 34/233 (14%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGR 107
G +R W ++ + SYL G LPGDYG+D GL +DP + E E+I+GR
Sbjct: 243 GPNRNKWLGPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYRE------AELIHGR 296
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLF 158
+AMLGAVG PE L + + Q WF+ G I A NY+ P +
Sbjct: 297 WAMLGAVGCFLPEYLNRFFGV-QFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAIL 355
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++ LMG E R + A PG G D YPGGP F+PLGL D
Sbjct: 356 ATQVLLMGAVEAYRAGNTA-PGQFGEDL------------DRLYPGGP-FDPLGLADDPD 401
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
+ + K+KE+KNGRLAM+A+LG++ Q +VTG GP +N L HL DP +N LT+
Sbjct: 402 TFAELKVKEIKNGRLAMVAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTA 454
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 122/231 (52%), Gaps = 35/231 (15%)
Query: 54 DRPLW---FASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYA 109
DR W ++ + YL+G LPGDYG+D GL +DP + E E+I+GR+A
Sbjct: 2 DRSKWLGPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYRE------AELIHGRWA 55
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY------TLFVL-- 160
MLGA+G + PE L + IP + WF+ G I G +Y D L +L
Sbjct: 56 MLGALGVVFPEYLSRNFDIPIAEPV-WFKAGAQIFSEGGLDYLGDARLVHAQSILLILGT 114
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG AE R + G+ G+ D YPGGP F+PLGL D ++
Sbjct: 115 QVLLMGAAEAYRTGN--GLGNFGKDL------------DSLYPGGP-FDPLGLANDPDTL 159
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
+ K+KE+KNGRLAM A+ G++VQ +VTG P +NL HLA P N L +
Sbjct: 160 AELKVKEIKNGRLAMFAMFGFYVQAIVTGESPLENLSAHLASPFTVNGLNA 210
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 133/263 (50%), Gaps = 46/263 (17%)
Query: 17 TARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPG 74
AR I R PT ++R+ V RA++ G DR + S + SYL G PG
Sbjct: 5 VARSIAAVR----PTRATRQ---VTRASAE---FYGPDRVKFLGPFSGATPSYLKGEYPG 54
Query: 75 DYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETA 133
DYG+D GLS DPE + E EVI+ R+AMLGA+G + PE+L K G A
Sbjct: 55 DYGWDTAGLSADPETFSRYREL------EVIHARWAMLGALGCVTPELLQKNGAANFGEA 108
Query: 134 LAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGR 184
+ WF+ G I G +Y + + + ++ LMG E R N G G
Sbjct: 109 V-WFKAGAQIFQDGGLDYLGNANLVHAQSIVAVLLTQIVLMGLIEGYR----VNGGPAGE 163
Query: 185 QYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 244
DP YPG F+PLGL D ++ + K+KE+KNGRLAM+++ G+F+Q
Sbjct: 164 ------------ITDPIYPG-EAFDPLGLADDPDTLAELKVKEIKNGRLAMVSMFGFFIQ 210
Query: 245 GLVTGVGPYQNLLDHLADPVNNN 267
+VTG GP +NL DHLA P N
Sbjct: 211 AIVTGKGPIENLNDHLAAPGETN 233
>gi|145079172|tpg|DAA05902.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca7 [Acetabularia acetabulum]
Length = 214
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 120/226 (53%), Gaps = 37/226 (16%)
Query: 21 ILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDP 80
LG S +PT S+R+ S PV Q ++P+W +L+ +LP DYGFDP
Sbjct: 5 FLGQTSRVTPTNSTRRMS---------PVTQATEQPVWLPGVNVPQHLNRNLPADYGFDP 55
Query: 81 LGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGL--IPQETALAWF 137
LGL S+PE KW E+++ R+AMLG G + P +L K G+ +PQ W+
Sbjct: 56 LGLGSEPEAL------KWYVQAELVHCRFAMLGVAGILIPGLLTKVGILNVPQ-----WY 104
Query: 138 QTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSM-------GRQYFLGF 190
+ G + + + + TL ++ +M +AE +R+ ++ NPGS G + G
Sbjct: 105 EAGKV-AIESQPFGLNFQTLLGFQLFMMTWAETKRWVEFKNPGSQSNPDSYPGAEMLPGK 163
Query: 191 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
LGGSGDP YPGG LFNP+G+G D K+KE+ NGR A L
Sbjct: 164 VFALGGSGDPNYPGG-LFNPMGMGDD-----SMKVKEIANGRTACL 203
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
F+PLGLG + +++K + E+ + R AML + G + GL+T VG
Sbjct: 53 FDPLGLGSEPEALKWYVQAELVHCRFAMLGVAGILIPGLLTKVG 96
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 116/206 (56%), Gaps = 36/206 (17%)
Query: 73 PGDYGFD-PLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQ 130
PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+
Sbjct: 1 PGDYGWDTSRGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFG 54
Query: 131 ETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGS 181
E WF+ G I G +Y +P ++ ++ LMG E R P
Sbjct: 55 EAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA--GGP-- 108
Query: 182 MGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGY 241
LG DP YPGG F+PLGL +D ++ + K+KE+KNGRLAM ++ G+
Sbjct: 109 ------------LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGF 155
Query: 242 FVQGLVTGVGPYQNLLDHLADPVNNN 267
FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 156 FVQAIVTGKGPLENLADHLADPVNNN 181
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 118/214 (55%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G + GDYG+DP GL PE K+ A+ E+I+ R+AMLGA G I PE L K
Sbjct: 86 EYLNGEVAGDYGYDPFGLGKKPENFA-----KYQAF-ELIHARWAMLGAAGCIIPEALNK 139
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLF---VLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G T +Y+ P L V E+ L+G AE+ R +
Sbjct: 140 YGANCGPEAV-WFKTGALLLDGNTLSYFGKNIPINLVLAVVGEVVLLGGAEYYRITNG-- 196
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L FE D +PGGP F+PL L KD + K+KE+KNGRLAM ++
Sbjct: 197 ---------LDFE-------DKLHPGGP-FDPLDLAKDPEQGALLKVKEIKNGRLAMFSM 239
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 240 FAFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVI 273
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 117/232 (50%), Gaps = 37/232 (15%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DR W ++ SYL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 32 GPDRAKWLGPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRET------ELIHAR 85
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLF 158
+AMLGA+G + PEIL K G ++ WF+ G I G +Y P +
Sbjct: 86 WAMLGALGCVTPEILAKYGGTSFGESV-WFRAGAQIFKDGGLDYLGSPALIHAQSIGAIV 144
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
+ ++ LMG E R N G G DP YPG F+PLGL D
Sbjct: 145 ISQVILMGLIEGYR----VNGGPAGEGL------------DPLYPG-ESFDPLGLADDPD 187
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
+ + K+KE+KNGRLAM ++ G++VQ +VTG GP +N +H+ADP N +
Sbjct: 188 TFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHVADPFTANAFS 239
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 136/273 (49%), Gaps = 39/273 (14%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTG--SSRKGSFVVRAASTPPVKQGADRPLW 58
+ + A ++S + Q+LG + + RK + A+ +P G DR L+
Sbjct: 3 IGSCAFAGGKISSLKPHSNQLLGVGAGVHGESRVTMRKSATKKFASESPSPWYGPDRVLY 62
Query: 59 FA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
S + SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G
Sbjct: 63 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALG 116
Query: 116 AIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMG 166
+ PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 117 CVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMG 174
Query: 167 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
E R P LG DP YPGG F+PLGL D + + K+K
Sbjct: 175 AVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVK 217
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDH 259
E+KNGRLAM ++ G+FVQ +VTG GP +NL DH
Sbjct: 218 ELKNGRLAMFSMFGFFVQAIVTGKGPIENLADH 250
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 108/222 (48%), Gaps = 33/222 (14%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W Q G PGDYG+D GLS DPE + E E+I+ R +LGA+G
Sbjct: 66 WDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARCGLLGALGM 119
Query: 117 IAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGF 167
+ PE+L I A WF+ G I G NY +P + +++ LMG
Sbjct: 120 VTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGL 179
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E R N G G DP YPG F+PLGL D + + K+KE
Sbjct: 180 VEGYR----VNGGPAGEGL------------DPLYPG-EAFDPLGLADDPDTFAELKVKE 222
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269
+KNGRLAM A LG+FVQ +VTG GP +NL DHLA+P NN
Sbjct: 223 IKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAF 264
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 118/214 (55%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GL PE K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 105 EYLNGEVPGDYGYDPFGLGRKPENFD-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 158
Query: 125 AGLIPQETALAWFQTG-VIPPAGTYNYWADPYTLFVLEMALM-----GFAEHRRFQDWAN 178
G A+ WF+TG ++ GT +Y+ + ++ + G AE+ R + N
Sbjct: 159 FGAYCGPEAV-WFKTGALLLDGGTLSYFGASIPINLIAAVVAEVVLVGGAEYYRATNGLN 217
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
F+ D +PGGP F+PLGL KD K+KE+KNGRLAM ++
Sbjct: 218 -----------FD-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFSM 258
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP +NL HL+DP NN+LT L
Sbjct: 259 LGFFLQAYVTGEGPVENLAAHLSDPFGNNILTVL 292
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 122/228 (53%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
GADR L+ S SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 50 GADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPET---FAKNREL---EVIHCRW 103
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
A+ +G + PE+L + G+ E WF+ G I G ++ +P ++
Sbjct: 104 AIAVGLGCVFPELLARNGVKFGEGV--WFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWA 161
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E + GR LG DP Y GG F+PLGLG D +
Sbjct: 162 CQVVLMGAVEGYHV-------AGGR---------LGEVVDPLYLGGS-FDPLGLGDDPER 204
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL DPVNNN
Sbjct: 205 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G + GDYG+DP GL PE K+ A+ E+I+ R+AMLGA G I PE L K
Sbjct: 83 EYLNGEVAGDYGYDPFGLGKKPENFA-----KYQAF-ELIHARWAMLGAAGFIIPEALNK 136
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWADPYTL-----FVLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + V E+ L+G AE+ R +
Sbjct: 137 YGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNG-- 193
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L FE D +PGGP F+PLGL KD + K+KE+KNGRLAM A+
Sbjct: 194 ---------LDFE-------DKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFAM 236
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 237 LGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 270
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 121/251 (48%), Gaps = 54/251 (21%)
Query: 33 SSRKGS----FVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPE 87
SSR G F A ++ V A+ WF + ++LDGS PGD+GFDPLGL + PE
Sbjct: 24 SSRSGRSGLPFCAYATTSGRVTMSAE---WFPGQPRPAHLDGSSPGDFGFDPLGLGTVPE 80
Query: 88 GTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGT 147
F E EV + R+AML G + PE LG + A W P G
Sbjct: 81 NFERFKE------SEVYHCRWAMLCVPGVLVPEALGLGNWV---KAQEWAAV----PGGQ 127
Query: 148 YNY------WADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP- 200
Y W + T+ +E + FAEH+R + DP
Sbjct: 128 ATYFGVPVPWGNLPTILAIEFLAIAFAEHQRTME----------------------KDPE 165
Query: 201 --AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLL 257
YPGG F+PLG KD ++++KLKE+KNGRLAMLA +G+ V Q G GP +NL
Sbjct: 166 KKKYPGG-AFDPLGFSKDPVKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLA 224
Query: 258 DHLADPVNNNV 268
HLADP +NN+
Sbjct: 225 SHLADPWHNNI 235
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 122/239 (51%), Gaps = 34/239 (14%)
Query: 42 RAASTPPVKQGADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKW 97
+ + + V G DRP + F+ +YL G PGDYG+D GLS DPE K
Sbjct: 28 KPSKSDSVWYGPDRPKFLGPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETF------KR 81
Query: 98 LAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP-- 154
EVI+ R+AMLGA+G I PE+L K + A+ WF+ G I G NY +P
Sbjct: 82 FRTVEVIHARWAMLGALGCIFPEVLEKYSGVEFGEAV-WFKAGAQIFADGGLNYLGNPGL 140
Query: 155 ------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLF 208
V+++ LMG E R G G D YPGG F
Sbjct: 141 VHAQSIVATLVVQVLLMGAVEIYRANGEGPSG-------------FGEGQDNLYPGGA-F 186
Query: 209 NPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+PLGL D ++ + K+KE+KNGRLAM+++LG+FVQ +VTG GP NLL HL +P N
Sbjct: 187 DPLGLADDPDTLAELKVKELKNGRLAMMSMLGFFVQAIVTGKGPLDNLLTHLEEPGEFN 245
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 129/279 (46%), Gaps = 60/279 (21%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT L S S +G S +P+ + + A ++ V A+ W
Sbjct: 1 MATSGLRSCS----------AVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAE---WMP 47
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
+ ++LDGS PGD+GFDPLGL+ PE F E EV + R+AML G + P
Sbjct: 48 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKE------SEVYHCRWAMLAVPGVLVP 101
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEHRRF 173
E LG + A W P G Y +P T+ V+E + FAEH+R
Sbjct: 102 EALGLGNWV---QAQEW----AAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRT 154
Query: 174 QDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
+ DP YPGG F+PLG KD +++KLKE+KN
Sbjct: 155 ME----------------------KDPEKKKYPGG-AFDPLGFSKDPVKFEEYKLKEIKN 191
Query: 231 GRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
GRLAMLA +G+ V Q G GP +NL HL+DP +NN+
Sbjct: 192 GRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNNI 230
>gi|223948005|gb|ACN28086.1| unknown [Zea mays]
Length = 163
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 102/173 (58%), Gaps = 11/173 (6%)
Query: 104 INGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMA 163
++GR+AML A G + P++L + G I + +WF AG+ Y+ADP+TLFV +MA
Sbjct: 1 MHGRWAMLAAAGILVPDLLARWGFI--DAGFSWFD------AGSREYFADPWTLFVSQMA 52
Query: 164 LMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKD 222
LMG+AE RR+ D+ PG + + F D YPGG F+ G+ + +
Sbjct: 53 LMGWAEGRRWADYLRPGCVDIE--PRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVMV 110
Query: 223 FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
+ KE+KNGRLAMLA +G++ Q + TG GP NLL HLADP + N+ ++ H
Sbjct: 111 LRTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTSH 163
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 116/214 (54%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GLS PE K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 4 EYLNGEVPGDYGYDPFGLSKKPEDFS-----KYQAY-ELIHARWAMLGAAGFIIPEACNK 57
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLFVLEMALM-----GFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + + ++ G AE+ R +
Sbjct: 58 FGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIING-- 114
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL D K+KE+KNGRLAM ++
Sbjct: 115 ---------LDLE-------DKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSM 157
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 158 LGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVI 191
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 111/222 (50%), Gaps = 47/222 (21%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + YLDGS PGD+GFDPLGL + PE F E E+I+ R+AML G
Sbjct: 50 WMPGQPRPPYLDGSAPGDFGFDPLGLGEVPENLERFKE------SELIHCRWAMLAVPGI 103
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + A W P G Y P T+ V+E + F EH
Sbjct: 104 LVPEALGLGNWV---KAQEWAAV----PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEH 156
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R SM + DP YPGG F+PLG KD + +K++K+KE
Sbjct: 157 QR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPEKLKEYKVKE 193
Query: 228 VKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 194 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 235
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 116/214 (54%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GLS PE K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 25 DYLNGEVPGDYGYDPFGLSKKPEDFS-----KYQAY-ELIHARWAMLGAAGFIIPEACNK 78
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLFVLEMALM-----GFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + + ++ G AE+ R +
Sbjct: 79 FGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIING-- 135
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL D K+KE+KNGRLAM ++
Sbjct: 136 ---------LDLE-------DKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSM 178
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 179 LGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVI 212
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G + GDYG+DP GL PE K+ A+ E+I+ R+AMLGA G I PE L K
Sbjct: 83 EYLNGEVAGDYGYDPFGLGKKPENFA-----KYQAF-ELIHARWAMLGAAGFIIPEALNK 136
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + V E+ L+G AE+ R +
Sbjct: 137 YGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNG-- 193
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L FE D +PGGP F+PLGL KD + K+KE+KNGRLAM A+
Sbjct: 194 ---------LDFE-------DKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFAM 236
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 237 LGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 270
>gi|307106621|gb|EFN54866.1| hypothetical protein CHLNCDRAFT_134943 [Chlorella variabilis]
Length = 268
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 121/228 (53%), Gaps = 30/228 (13%)
Query: 57 LWFASKQSL--SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGA 113
LWF ++ YLDGSL GD GFDPLGL S PE + W + EV +GR AM G
Sbjct: 49 LWFPGNTAVVPDYLDGSLVGDNGFDPLGLGSSPE------QLSWNVHAEVFHGRLAMTGC 102
Query: 114 VGAIAPEILGKAGL-IPQETALAWFQTGVIPPAGTYN--YWADPYTLFVLEMALMGFAEH 170
G + +L G +P+ W++ G + N + A Y+ VL GFAE
Sbjct: 103 AGILLTSLLHAGGADVPE-----WYEAGKVYMEKNPNVSFGALVYSTIVLS----GFAEF 153
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGG-----SGDPAYPGGPLFNPLGL--GKDEKSMKDF 223
+R D NPGS G K +GG G P Y GG F+P+GL G E+++K +
Sbjct: 154 KRLNDIRNPGSQGSGILPEDFKGVGGPQGRTVGGP-YVGGRFFDPMGLCRGSPEQTLK-Y 211
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
K E++NGRLAM+ LG+ Q TG GP NL+DH++DP + N +++
Sbjct: 212 KWNEIRNGRLAMIGFLGFAAQYCATGKGPIDNLIDHVSDPTHVNFISN 259
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GLS +P+ ++ AY E+I+ R+AMLGA G I PE K
Sbjct: 86 EYLNGEVPGDYGYDPFGLSKNPDNFA-----RYQAY-ELIHARWAMLGAAGFIIPEACNK 139
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWADPYTL-----FVLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + + V E+ L+G AE+ R +
Sbjct: 140 FGANCGPEAV-WFKTGALLLEGNTLNYFGNSIPINLAVAVVAEVVLVGGAEYYRIING-- 196
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL D K+KE+KNGRLAM ++
Sbjct: 197 ---------LDLE-------DKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSM 239
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 273
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 122/238 (51%), Gaps = 33/238 (13%)
Query: 52 GADRPLWFAS--KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRY 108
G RP W +L G PGDYGFD GL DP + E+++ R+
Sbjct: 100 GEARPRWLGPIPYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFN------FEILHCRW 153
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTL 157
AML A+G + PE+L G++ W++ G G T +Y +
Sbjct: 154 AMLAALGVVIPELLDLFGIV-HFVEPVWWKVGYAKLQGDTLDYLGITGLRIAGGQGVIVI 212
Query: 158 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 217
+ + LM E+ R+ G + YL GD YPGG LF+PLGL KD
Sbjct: 213 AICQALLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGALFDPLGLSKDP 262
Query: 218 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
++ K+KE+KNGRLAM+A LG+++Q VTG GP QNL++HL+DP++NN+L+S FH
Sbjct: 263 VGFEELKVKEIKNGRLAMVAWLGFYLQAAVTGKGPVQNLVEHLSDPLHNNILSS--FH 318
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 115/229 (50%), Gaps = 37/229 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G +R W S + YL G GDYG+D GLS DPE + E E+I+ R+
Sbjct: 42 GPERAKWLGPFSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYREL------ELIHARW 95
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FV 159
AMLGA+G I PE+L K G +P A+ WF+ G I G NY + +
Sbjct: 96 AMLGALGCITPELLAKNG-VPFGEAV-WFKAGAQIFQEGGLNYLGNSSLIHAQSILATLA 153
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 154 CQVILMGLVEGYR----VNGGPAGEGL------------DPLYPG-EAFDPLGLADDPDT 196
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP NL HL+DP NN
Sbjct: 197 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPSGNNA 245
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 137/274 (50%), Gaps = 46/274 (16%)
Query: 1 MATQALVSSSLTSSVETARQILGA------RSAQSPTGSSRKGSFVVRAASTPPVKQGAD 54
+ + A L+S Q+LG S + S+ K SF A+++P G D
Sbjct: 8 IGSCAFAGGQLSSLKPHTNQLLGVGAGVHGESRVTMRKSATKKSF---ASASPSPWYGPD 64
Query: 55 RPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAML 111
R L+ S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AML
Sbjct: 65 RVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAML 118
Query: 112 GAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEM 162
GA+G + PE+L + G+ E WF+ G I G +Y +P ++ ++
Sbjct: 119 GALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 176
Query: 163 ALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKD 222
LMG E R P LG DP YPGG F+PLGL D + +
Sbjct: 177 ILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAFAE 219
Query: 223 FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 256
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL
Sbjct: 220 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 253
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 122/247 (49%), Gaps = 41/247 (16%)
Query: 27 AQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SD 85
A P+G +R+ S V +A+S RPLW ++L G LPGD+GFDPLGL ++
Sbjct: 10 AVRPSGVARR-SVVAKASS---------RPLWLPGSTPPAHLKGELPGDFGFDPLGLGAN 59
Query: 86 PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG--VIP 143
P+ KW E+++ R+AM G + EI+ + W+ G V
Sbjct: 60 PDSL------KWFRESELVHSRWAMAAVAGILVQEIV--------RPDVFWYSAGSQVES 105
Query: 144 PAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYP 203
P G P L E M + E RR+QD PGS+ + F +Y +P YP
Sbjct: 106 PLG-------PLGLLAFEFFCMHWVELRRWQDLRKPGSVDQDPI--FSQYKLPPHEPGYP 156
Query: 204 GGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
GG +F P G + + K+KE+KNGRLAMLA +G+ + VTG GP L +HLADP
Sbjct: 157 GG-VFAPFIPG----DLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPIAALQEHLADP 211
Query: 264 VNNNVLT 270
+ +
Sbjct: 212 WGTTIFS 218
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 118/228 (51%), Gaps = 36/228 (15%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G +RP + S + SYL G PGDYG+D GLS DPE + E EVI+ R+
Sbjct: 31 GPNRPQFLGPFSGSTPSYLKGEYPGDYGWDTAGLSADPETFARYREL------EVIHARW 84
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L G+ A+ WF+ G I G +Y +P + +
Sbjct: 85 AMLGALGCVTPELLQNNGVASFGEAV-WFKAGAQIFQEGGLDYLGNPSLIHAQSIVAVLL 143
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R N G G D YPG F+PLGL D +
Sbjct: 144 TQLTLMGLIEGYR----VNGGPAGEGL------------DALYPG-EAFDPLGLADDPDT 186
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM+++ G+FVQG+VT GP +NL DHLA P N
Sbjct: 187 FSELKVKELKNGRLAMVSMFGFFVQGIVTKKGPIENLNDHLASPDATN 234
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 115/211 (54%), Gaps = 27/211 (12%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PG+YG+DP GLS PE K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 89 EYLNGEVPGEYGYDPFGLSKKPEDFA-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 142
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLFVLEMALMGFAEHRRFQDWANPGS 181
G A+ WF+TG + G T NY+ P L + +A + + N
Sbjct: 143 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLILAVVAEVVLVGGAEYYRIING-- 199
Query: 182 MGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGY 241
L E D +PGGP F+PLGL KD K+KE+KNGRLAM ++LG+
Sbjct: 200 ------LDLE-------DKLHPGGP-FDPLGLAKDPDQAAILKVKEIKNGRLAMFSMLGF 245
Query: 242 FVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 246 FIQAYVTGQGPVENLAAHLSDPFGNNLLTVI 276
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G + GDYG+DP GL PE K+ A+ E+I+ R+AMLGA G I PE L K
Sbjct: 83 EYLNGEVAGDYGYDPFGLGKKPENFA-----KYQAF-ELIHARWAMLGAAGFIIPEALNK 136
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWA-----DPYTLFVLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + V E+ L+G +E+ R +
Sbjct: 137 YGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGSEYYRITNG-- 193
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L FE D +PGGP F+PLGL KD + K+KE+KNGRLAM A+
Sbjct: 194 ---------LDFE-------DKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFAM 236
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 237 LGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 270
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 118/245 (48%), Gaps = 54/245 (22%)
Query: 36 KGSFVVRAASTPP--VKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGF 92
K SF V+ A+ + ADR LW + ++L+G+LPGDYG+DP+GL +DP+ F
Sbjct: 18 KASFGVKKATAARDVTVRAADRTLWLPNTVPPAHLNGTLPGDYGYDPIGLATDPDRLAWF 77
Query: 93 IEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-----IPPAGT 147
+E E NGR+AM G G + + L G P WF G IP G
Sbjct: 78 VE------AERTNGRWAMAGVAGILFTDAL-HIGSAP------WFSIGAELESPIPLWG- 123
Query: 148 YNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
L +E + GF E +R + W G G + +P
Sbjct: 124 ---------LATIEFVIFGFLEMKRLEGWKKTGQNGLLNW--------------FP---- 156
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
F+PLG+ K+ +KEVKNGRLAM A G+ VQ LVT GP NL H+ADP NNN
Sbjct: 157 FDPLGMNS-----KEMMVKEVKNGRLAMFAWCGFMVQALVTREGPVTNLEKHIADPFNNN 211
Query: 268 VLTSL 272
+TS+
Sbjct: 212 FITSI 216
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 135/265 (50%), Gaps = 35/265 (13%)
Query: 14 SVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGS 71
SV +A +G++ +S + + ++++ V G DRP + S SYL G
Sbjct: 2 SVISANTFVGSKPVNKKMVTSMRRT-QKKSSAPDSVWYGPDRPQFLGPFSGDCPSYLTGE 60
Query: 72 LPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQ 130
PGDYG+D GLS DPE + E E+I+ R+AMLGA+G + PEIL K G +
Sbjct: 61 FPGDYGWDTAGLSADPETFRRYREQ------ELIHARWAMLGALGCVTPEILSKYGGVSF 114
Query: 131 ETALAW------FQTGVIPPAGTYNYWADPYTLFVL--EMALMGFAEHRRFQDWANPGSM 182
++ + FQ G + G N L +L ++ LMG E R N G +
Sbjct: 115 GESVWFKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYR----VNGGPL 170
Query: 183 GRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYF 242
G DP YPG F+PLGL D + + K+KE+KNGRLAM ++ G++
Sbjct: 171 GEGL------------DPLYPGDK-FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFY 217
Query: 243 VQGLVTGVGPYQNLLDHLADPVNNN 267
VQ +VTG GP +N +H+A+P + N
Sbjct: 218 VQAVVTGKGPIENWAEHVANPFSVN 242
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 119/214 (55%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GLS +P+ ++ AY E+I+ R+AMLGA G I PE K
Sbjct: 86 EYLNGEVPGDYGYDPFGLSKNPDNFA-----RYQAY-ELIHARWAMLGAAGFIIPEACNK 139
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWADPYTL-----FVLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + + V E+ L+G AE+ R +
Sbjct: 140 FGANCGPEAV-WFKTGALLLEGNTLNYFGNSIPINLAVAVVAEVVLVGGAEYYRIING-- 196
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E L +PGGP F+PLGL D K+KE+KNGRLAM +
Sbjct: 197 ---------LDLEGKL-------HPGGP-FDPLGLASDPDQAAPLKVKEIKNGRLAMFPM 239
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVI 273
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 115/228 (50%), Gaps = 37/228 (16%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G +R W S + YL G GDYG+D GLS DPE + E E+I+ R+
Sbjct: 41 GPNRAKWLGPFSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYREL------ELIHARW 94
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FV 159
AMLGA+G I PE+L K G +P A+ WF+ G I G NY + +
Sbjct: 95 AMLGALGCITPELLAKNG-VPFGEAV-WFKAGAQIFQEGGLNYLGNSSLIHAQSILATLA 152
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R N G G DP YPG F+PLGL D +
Sbjct: 153 CQVILMGLVEGYR----VNGGPAGEGL------------DPLYPG-EAFDPLGLADDPDT 195
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP NL HL+DP NN
Sbjct: 196 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPSGNN 243
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 133/279 (47%), Gaps = 66/279 (23%)
Query: 2 ATQALVSSSLTSSVETA-RQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
AT AL S +L T+ R + G + RK + + A++ GADR L+
Sbjct: 4 ATMALTSRALVGKPATSTRDVFGEGRI-----TMRKTAGKPKPAASGSPWYGADRVLYLG 58
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAI 117
S Q SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G +
Sbjct: 59 PLSGQPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCV 112
Query: 118 APEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFA 168
PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG
Sbjct: 113 FPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAV 170
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E R D D ++ + K+KE+
Sbjct: 171 EGYRIAD----------------------------------------DPEAFAELKVKEI 190
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 191 KNGRLAMFSMFGFFVQAIVTGKGPVENLADHLADPVNNN 229
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 128/279 (45%), Gaps = 60/279 (21%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MAT L S S +G S +P+ + + A ++ V A+ W
Sbjct: 1 MATSGLRSCS----------AVGVPSLLAPSSNRSRLPVCAYATTSGRVTMSAE---WMP 47
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
+ ++LDGS PGD+GFDPLGL+ PE F E EV + R+AML G + P
Sbjct: 48 GQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKE------SEVYHCRWAMLAVPGVLVP 101
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEHRRF 173
E LG + A W P G Y +P T+ V+E + FAEH+R
Sbjct: 102 EALGLGNWV---QAQEW----AAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRT 154
Query: 174 QDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
+ DP YPGG F+PLG KD +++KLKE+KN
Sbjct: 155 ME----------------------KDPEKKKYPGG-AFDPLGFSKDPVKFEEYKLKEIKN 191
Query: 231 GRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
GRLAMLA + + V Q G GP +NL HL+DP +NN+
Sbjct: 192 GRLAMLAFVAFCVQQSAYPGTGPLENLASHLSDPWHNNI 230
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 112/219 (51%), Gaps = 41/219 (18%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
WF + +LDGS PGD+GFDPLGL+ PE + F E EV + R+AML G
Sbjct: 19 WFPGQPRPVHLDGSSPGDFGFDPLGLATVPENSERFKE------SEVYHCRWAMLCVPGV 72
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY------WADPYTLFVLEMALMGFAEH 170
+ PE LG + A W P G Y W + T+ +E + FAEH
Sbjct: 73 LVPEALGLGNWV---KAQEWAAV----PGGQATYFGVPVPWGNLPTILAIEFLAIAFAEH 125
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
+R + +P +KY GG+ F+PLG KD ++++KLKE++N
Sbjct: 126 QRTME-KDPEK---------KKYPGGA----------FDPLGFSKDPVKLEEYKLKEIRN 165
Query: 231 GRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
GRLAMLA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 166 GRLAMLAFVGFCVQQSPYPGTGPLENLASHLADPWHNNI 204
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 111/219 (50%), Gaps = 41/219 (18%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
WF + ++LDGS PGD+GFDPLGL + PE F E EV + R+AML G
Sbjct: 18 WFPGQPRPAHLDGSSPGDFGFDPLGLGTVPENFERFKE------SEVYHCRWAMLCVPGV 71
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY------WADPYTLFVLEMALMGFAEH 170
+ PE LG + A W P G Y W + T+ +E + FAEH
Sbjct: 72 LVPEALGLGNWV---KAQEWAAV----PGGQATYFGVPVPWGNLPTILAIEFVAIAFAEH 124
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
+R + +P +KY GG+ F+PLG KD +++KLKE+KN
Sbjct: 125 QRTME-KDPEK---------KKYPGGA----------FDPLGFSKDPVKFEEYKLKEIKN 164
Query: 231 GRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
GRLAMLA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 165 GRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 203
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 119/230 (51%), Gaps = 39/230 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DR W F+ SYL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 29 GPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQ------ELIHAR 82
Query: 108 YAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTL 157
+AMLGA+G + PEIL K AG+ E+ WF+ G I G +Y +P +
Sbjct: 83 WAMLGALGCVTPEILSKYAGVSFGESV--WFKAGSQIFQEGGLDYLGNPSLVHAQSILAI 140
Query: 158 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 217
++ LMG E R N G +G D +PG F+PLGL D
Sbjct: 141 LGCQVVLMGLIEAYR----VNGGPLGEGL------------DVLHPGEK-FDPLGLADDP 183
Query: 218 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ + K+KE+KNGRLAM ++ G++VQ +VTG GP +N +H+ADP + N
Sbjct: 184 DTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 119/230 (51%), Gaps = 39/230 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DR W F SYL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 29 GPDRAKWLGPFFEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQ------ELIHAR 82
Query: 108 YAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTL 157
+AMLGA+G + PEIL K AG+ E+ WF+ G I G +Y +P +
Sbjct: 83 WAMLGALGCVTPEILSKYAGVSLGESV--WFKAGSQIFQEGGLDYLGNPSLVHAQSILAI 140
Query: 158 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 217
++ LMG E R N G +G+ D +PG F+PLGL D
Sbjct: 141 LGCQVVLMGLIEAYR----VNGGPLGKGL------------DVLHPGEK-FDPLGLADDP 183
Query: 218 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ + K+KE+KNGRLAM ++ G++VQ +VTG GP +N +H+ADP + N
Sbjct: 184 DTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 119/230 (51%), Gaps = 39/230 (16%)
Query: 52 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGR 107
G DR W F+ SYL G PGDYG+D GLS DPE + E E+I+ R
Sbjct: 29 GPDRAKWLGPFSEGDVPSYLTGQFPGDYGWDTAGLSADPETFKAYREQ------ELIHAR 82
Query: 108 YAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTL 157
+AMLGA+G + PEIL K AG+ E+ WF+ G I G +Y +P +
Sbjct: 83 WAMLGALGCVTPEILSKYAGVSFGESV--WFKAGSQIFQEGGLDYLGNPSLVHAQSILAI 140
Query: 158 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 217
++ LMG E R N G +G D +PG F+PLGL D
Sbjct: 141 LGCQVVLMGLIEAYR----VNGGPLGEGL------------DVLHPGEK-FDPLGLADDP 183
Query: 218 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ + K+KE+KNGRLAM ++ G++VQ +VTG GP +N +H+ADP + N
Sbjct: 184 DTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 132/276 (47%), Gaps = 50/276 (18%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ + A ++S Q+LG + G + +R A+T V A W+
Sbjct: 8 IGSCAFAGGQISSLKPHTNQLLGVGA-----GVHGEARVTMRKATTKKVSASASTSPWYG 62
Query: 61 SKQSL----------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
+ L SYL G PGDYG+D GLS DPE F + + L EVI+ R+A
Sbjct: 63 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWA 116
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 117 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 174
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 175 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 217
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 256
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL
Sbjct: 218 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 253
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 124/242 (51%), Gaps = 41/242 (16%)
Query: 42 RAASTPPVKQ----GADRPLWFA--SKQSLSYLDGSLPGDYG-FDPLGLSDPEGTGGFIE 94
R A+ PV G DR + S + SYL G P G P+ DPE F +
Sbjct: 38 RGATKAPVSSSPWYGPDRVKYLGPFSGEPPSYLTGEFPVTTGGTPPVCQPDPET---FAK 94
Query: 95 PKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWAD 153
+ L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +
Sbjct: 95 NREL---EVIHARWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGN 149
Query: 154 P--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 205
P ++ ++ LMG E R P LG DP YPGG
Sbjct: 150 PSLVHAQSILAIWACQVILMGAVEGYRVA--GGP--------------LGEITDPLYPGG 193
Query: 206 PLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVN 265
F+PLGL D ++ + K+KE+KNGRLAM ++ G++VQ +VTG GP +NL DHLADPVN
Sbjct: 194 S-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPLENLADHLADPVN 252
Query: 266 NN 267
NN
Sbjct: 253 NN 254
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 132/276 (47%), Gaps = 50/276 (18%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
+ + A ++S Q+LG + G + +R A+T V A W+
Sbjct: 8 IGSCAFAGGQISSLKPHTNQLLGVGA-----GVHGEARVTMRKATTKKVSASASTSPWYG 62
Query: 61 SKQSL----------SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYA 109
+ L SYL G PGDYG+D GLS DPE F + + L EVI+ R+A
Sbjct: 63 PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWA 116
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 117 MLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAC 174
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R P LG DP YPGG F+PLGL D +
Sbjct: 175 QVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLGLADDPDAF 217
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL 256
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL
Sbjct: 218 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 253
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 116/233 (49%), Gaps = 31/233 (13%)
Query: 42 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAY 100
R+A V + + RPLW ++L G LPGD+GFDPLGL ++ E KW
Sbjct: 16 RSARRSVVSKASSRPLWLPGSTPPAHLKGELPGDFGFDPLGLGANAESL------KWFKE 69
Query: 101 GEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG--VIPPAGTYNYWADPYTLF 158
E+++ R+AM G + EI+ + W+ G V P G P L
Sbjct: 70 SELVHCRWAMAAVAGILVQEIV--------RPDVFWYNAGKEVESPLG-------PLGLL 114
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
+E LM + E RR+QD PGS+ + F +Y + + YPGG +F P G
Sbjct: 115 AVEFFLMHWVELRRWQDLRKPGSVDQDPI--FSQYKLPAHEVGYPGG-VFAPFIPG---- 167
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
+ + K+KE+KNGRLAMLA +G+ + VTG GP L +HLADP + +
Sbjct: 168 DLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPIAALQEHLADPFGTTIFSK 220
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 109/222 (49%), Gaps = 47/222 (21%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + SYLDGS PGD+GFDPL L + PE F E E+I+ R+AML G
Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDPLRLGEVPENLERFKE------SELIHCRWAMLAVPGI 102
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + + A P G Y +P T+ V+E + F EH
Sbjct: 103 LVPEALGLGNWVKAQEWAAL-------PGGQATYLGNPVPWGTLPTILVIEFLSIAFVEH 155
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R SM + DP YPGG F+PLG KD K ++K+KE
Sbjct: 156 QR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKFHEYKIKE 192
Query: 228 VKNGRLAMLAILGYFVQGLV-TGVGPYQNLLDHLADPVNNNV 268
VKNGRLA+LA +G VQ G GP +NL HLADP +NN+
Sbjct: 193 VKNGRLALLAFVGIVVQQTAYPGTGPLENLATHLADPWHNNI 234
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 111/203 (54%), Gaps = 33/203 (16%)
Query: 75 DYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETA 133
DYG+D GLS DPE F + + L EVI+GR+AMLGA+G I PE+L K + +
Sbjct: 1 DYGWDTAGLSADPEA---FAKNRAL---EVIHGRWAMLGALGCITPEVLQKWLNVTFKEP 54
Query: 134 LAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGR 184
+ WF+ G I G +Y +P + ++ +MG E R
Sbjct: 55 V-WFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVVMGLVEGFRIN---------- 103
Query: 185 QYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 244
G + G G+ YPGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ
Sbjct: 104 ----GLDGV--GEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 157
Query: 245 GLVTGVGPYQNLLDHLADPVNNN 267
+VTG GP +NLLDHL +PV NN
Sbjct: 158 AIVTGKGPLENLLDHLDNPVANN 180
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 116/214 (54%), Gaps = 33/214 (15%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL+G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 89 EYLNGEVPGDYGYDPFGLSKKPDDF-----TKYQAY-ELIHARWAMLGAAGFIIPEACNK 142
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWADPYTLFVLEMALMGF-----AEHRRFQDWAN 178
G A+ WF+TG + G T NY+ + + ++ + AE+ R +
Sbjct: 143 FGANCGPEAV-WFKTGALLLDGNTLNYFGNSIPINLILAVVAEVVLVGGAEYYRIING-- 199
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L E D +PGGP F+PLGL D K+KE+KNGRLAM ++
Sbjct: 200 ---------LDLE-------DKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSM 242
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 243 LGFFIQAYVTGEGPVENLSAHLSDPFGNNLLTVI 276
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 131/285 (45%), Gaps = 60/285 (21%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGS----FVVRAASTPPVKQGADRPL 57
AT A+ SSS S +G S +P SSR G F A ++ V A+
Sbjct: 22 ATMAMASSSGLRSCSA----VGVPSLLAP--SSRSGRSGLPFCAYATTSGRVTMSAE--- 72
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
WF + ++LDGS PGD+GFDPLGL+ PE F E E+ + R+AML G
Sbjct: 73 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKE------SEIYHCRWAMLCVPGV 126
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + A W P G Y +P T+ +E + FAE
Sbjct: 127 LVPEALGLGNWV---KAQEWAAL----PDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQ 179
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R + DP YPGG F+PLG KD ++ KLKE
Sbjct: 180 QRTME----------------------KDPEKKKYPGG-AFDPLGFSKDPAKFEELKLKE 216
Query: 228 VKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNVLTS 271
+KNGRLAMLA +G+ V Q G GP +NL HLADP +N TS
Sbjct: 217 IKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNTSATS 261
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 117/238 (49%), Gaps = 44/238 (18%)
Query: 39 FVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKW 97
F A ++ V A+ W + ++LDGS PGD+GFDPLGL+ PE F E
Sbjct: 37 FCAHATTSGRVTMSAE---WMPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKE--- 90
Query: 98 LAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY------W 151
EV + R+AML G + PE LG + A W P G Y W
Sbjct: 91 ---SEVYHCRWAMLAVPGVLVPEALGLGNWV---KAQEWAAV----PGGQATYLGAPVPW 140
Query: 152 ADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL 211
T+ +E + FAEH+R + +P +KY GG+ F+PL
Sbjct: 141 GTLPTILAVEFVAIAFAEHQRTME-KDPEK---------KKYPGGA----------FDPL 180
Query: 212 GLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
G +D ++++KLKE+KNGRLAMLA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 181 GFSRDPAKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNI 238
>gi|303324981|pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 103/186 (55%), Gaps = 23/186 (12%)
Query: 84 SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIP 143
DPE +W E++NGR+AMLG G + PE+ G+I W+
Sbjct: 3 EDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII---NVPKWYA----- 48
Query: 144 PAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYP 203
AG Y+A TLFV+E L + E RR+QD NPGS+ + F++Y +G+ YP
Sbjct: 49 -AGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYP 105
Query: 204 GGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
GG +FNPL ++ K KE+ NGRL MLA LG+ +Q VTG GP+ NLL H++DP
Sbjct: 106 GG-IFNPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDP 159
Query: 264 VNNNVL 269
+N ++
Sbjct: 160 WHNTIV 165
>gi|308804351|ref|XP_003079488.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029297|gb|AAY27547.1| chloroplast light-harvesting complex I protein precursor Lhca5
[Ostreococcus tauri]
gi|116057943|emb|CAL54146.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 212
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 130/255 (50%), Gaps = 56/255 (21%)
Query: 19 RQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGF 78
R L ARS +P + R + V ADR +W+A ++LDGS+ GDYGF
Sbjct: 5 RSALSARSIATPKATRR----------SAVVAAAADRKMWYAP----AHLDGSIAGDYGF 50
Query: 79 DPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWF 137
DPLGL ++P+ K+ E++N R+AM+ G + E+ AG+ P+ W+
Sbjct: 51 DPLGLGTNPD------RLKYYQEAELMNARWAMMAVAGIVGTEV---AGIEPR-----WW 96
Query: 138 QTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGS 197
+ AGT +Y P L ++ +MG+ E++R Q W GS G
Sbjct: 97 E------AGTEDYGFPPAALLAIQFPVMGYLENKRIQGWMATGSSGV------------- 137
Query: 198 GDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLL 257
+ +P F+P+G+G + +MK LKE+KNGR AM+A +G VQ +V GP L
Sbjct: 138 -NETFP----FDPMGMGSKDANMK---LKEIKNGRAAMIAFVGIVVQAIVYREGPVAALK 189
Query: 258 DHLADPVNNNVLTSL 272
DH+++P N+ T++
Sbjct: 190 DHISNPFGCNMATNI 204
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 153/292 (52%), Gaps = 45/292 (15%)
Query: 2 ATQALVSS----SLTSSVETARQILGARSA--QSPTGSSRKGSFVVRAASTPPVKQGADR 55
A +AL +S SL +E ++++ S+ Q+ T +RK S + G +R
Sbjct: 63 AVKALANSPLGESLQRRLEESKKVAVKESSKFQALTAKARKES----------LWYGEER 112
Query: 56 PLWFAS--KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGA 113
P W +YL G LPGDYGFD GLS + + F ++ + E+++ R+AML A
Sbjct: 113 PRWLGPIPYDYPAYLTGELPGDYGFDVAGLS--KDSVAF--QRYFNF-EILHARWAMLAA 167
Query: 114 VGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLFVLEM 162
+GA+APE+L +G W++ G G T +Y P + + +
Sbjct: 168 LGALAPEVLDLSGAF-HFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGSQGVLVIAICQA 226
Query: 163 ALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKD 222
LM E+ R+ G + YL GD YPGGPLF+PL L D ++++
Sbjct: 227 LLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGPLFDPLNLSSDAVALEE 276
Query: 223 FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKF 274
K+KE+KNGRLAM+A LG++ Q +TG GP QNL++H++DP +NN+L LKF
Sbjct: 277 LKVKEIKNGRLAMVAWLGFYAQAALTGKGPVQNLVEHISDPFHNNLLCVLKF 328
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 120/248 (48%), Gaps = 40/248 (16%)
Query: 27 AQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SD 85
A P+ S + S V +A+S RPLW ++L G LPGD+GFDPLGL ++
Sbjct: 10 AARPSARSARRSVVAKASS---------RPLWLPGSTPPAHLKGDLPGDFGFDPLGLGAN 60
Query: 86 PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG--VIP 143
E KW E+++ R+AM G + EI+ + W+ G V
Sbjct: 61 AESL------KWFKESELVHSRWAMAAVAGILVQEIV--------RPDVFWYNAGKEVES 106
Query: 144 PAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYP 203
P G P L +E LM + E RR+QD PGS+ + F +Y + YP
Sbjct: 107 PLG-------PLGLLAVEFFLMHWVEVRRWQDLRKPGSVDQDPI--FSQYKLPPHEVGYP 157
Query: 204 GGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADP 263
GG +F P G + + K+KE+KNGRLAMLA +G+ + VTG GP L +HLADP
Sbjct: 158 GG-VFAPFIPG----DLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPIAALQEHLADP 212
Query: 264 VNNNVLTS 271
+ +
Sbjct: 213 WGTTIFSK 220
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 98/175 (56%), Gaps = 28/175 (16%)
Query: 102 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP------ 154
EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 19 EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQ 76
Query: 155 --YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLG 212
++ ++ LMG E R P LG DP YPGG F+PLG
Sbjct: 77 SILAIWACQVVLMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLG 119
Query: 213 LGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
L D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 120 LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 174
>gi|87313173|gb|ABD37883.1| light-harvesting chlorophyll-a/b binding protein Lhca5.1
[Mesostigma viride]
Length = 195
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 117/215 (54%), Gaps = 26/215 (12%)
Query: 4 QALVSSSLTSSVETARQILGARSAQSPTGSSRKGSF----VVRAASTPPVKQGADRPLWF 59
AL + + ++ + I GA ++P S + + VVRA P + ++RPLW+
Sbjct: 1 MALACMTTSVALNASTFIRGAGPVRAPVAKSGRNAAPKRSVVRAGGAAP--EPSERPLWY 58
Query: 60 ASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
++ +L+GSLPGDYGFDP+G S P +W+ + E+++ R+AMLG G +
Sbjct: 59 PGTKAPEWLNGSLPGDYGFDPVGFGSSPSSL------RWMVHAELVHARWAMLGVAGVLG 112
Query: 119 PEILGKA-GLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWA 177
E++ G IP W++ AG +Y+AD TL V+ LMGF E +R+ D
Sbjct: 113 QELVHVTNGSIPH-----WYE------AGKVSYFADTPTLIVVMHILMGFVETKRYFDIV 161
Query: 178 NPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLG 212
NPGS + F G E+ + G+ P YPGG LF+PLG
Sbjct: 162 NPGSQAQPGFAGAERLMLGT-SPGYPGGILFDPLG 195
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 121/245 (49%), Gaps = 45/245 (18%)
Query: 32 GSSRKGSFVVRAASTPPVKQGADRPLWFASKQSL----------SYLDGSLPGDYGFDPL 81
G + +R A+T V A W+ + L SYL G PGDYG+D
Sbjct: 13 GVHGEARVTMRKATTKKVSASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTA 72
Query: 82 GLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG 140
GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G
Sbjct: 73 GLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAG 124
Query: 141 V-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 191
I G +Y +P ++ ++ LMG E R P
Sbjct: 125 AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA--GGP------------ 170
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
LG DP YPGG F+PLGL D + + K+KE+KNGRLAM ++ G+FVQ +VTG G
Sbjct: 171 --LGEVTDPIYPGGS-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 227
Query: 252 PYQNL 256
P +NL
Sbjct: 228 PIENL 232
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 99/175 (56%), Gaps = 28/175 (16%)
Query: 102 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP------ 154
EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 89 EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQ 146
Query: 155 --YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLG 212
++ ++ LMG E R P LG DP YPGG F+PLG
Sbjct: 147 SILAIWATQVILMGAVEGYRIA--GGP--------------LGEVTDPIYPGGS-FDPLG 189
Query: 213 LGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
L D +++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 190 LADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 244
>gi|145079136|tpg|DAA05900.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Acetabularia acetabulum]
Length = 192
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 112/225 (49%), Gaps = 44/225 (19%)
Query: 49 VKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGR 107
V +DR +W + +LDGSL GD+GFDPLGL S+P+ KW E NGR
Sbjct: 3 VNASSDRQMWLVGAAAPEHLDGSLAGDFGFDPLGLGSEPD------RLKWYVEAEKTNGR 56
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGF 167
+AM+ G + E+LG + P+ WF+ AG +Y + L +E ++GF
Sbjct: 57 WAMMAVAGILGQELLG---VTPK-----WFE------AGAKDYGIPFFPLLAMEAIILGF 102
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E +R+Q + GS G F DPA P D +LKE
Sbjct: 103 LETKRYQGFKTTGSSGFLNSFPF--------DPANMNSP---------------DMQLKE 139
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+KNGRLAM+A +G+ VQ LVT GP + L +H+ DP +N+ ++
Sbjct: 140 IKNGRLAMIAFVGFSVQALVTREGPIEGLFNHIGDPFGHNITANV 184
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 108/215 (50%), Gaps = 45/215 (20%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DP+ + E EVI+ R+AMLGA+G + PE+L
Sbjct: 57 SYLTGEFPGDYGWDTAGLSADPQTFARYREI------EVIHARWAMLGALGCVVPELLDG 110
Query: 125 AGLIPQETALAWFQTGV------------IPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
I AWF G IP G N + TL V ++ LM + E R
Sbjct: 111 TNHI------AWFNAGATIFSDDGLQYLGIP--GLINAKSIVATLIV-QVILMSYVEGYR 161
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 232
P G D YPGG F+PLGL D + + K+KE+KNGR
Sbjct: 162 VN--GGPAGTGL--------------DAVYPGGS-FDPLGLADDPDTFSELKVKEIKNGR 204
Query: 233 LAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
LAML++ G+F+Q +VTG GP +NL HLAD NN
Sbjct: 205 LAMLSMFGFFIQAIVTGEGPIENLNKHLADASANN 239
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 133/282 (47%), Gaps = 63/282 (22%)
Query: 1 MATQALVSSSLT---SSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPL 57
MA+ L+SS+++ S + +++ + S G++ F + A P G RP
Sbjct: 1 MASNTLMSSAISAFPSLLSSSKSRFATAAPLSCFGTNASSRFSMTADWMP----GQPRP- 55
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
YLDGS PGD+GFDPL L + PE F E E+I+ R+AML G
Sbjct: 56 --------PYLDGSAPGDFGFDPLRLGEVPENLERFKE------SELIHCRWAMLAVPGI 101
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + A W P G Y +P T+ +E + F EH
Sbjct: 102 LVPEALGLGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTVLAIEFLAISFVEH 154
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R SM + DP YPGG F+PLG KD K ++K+KE
Sbjct: 155 QR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKFHEYKVKE 191
Query: 228 VKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 192 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 133/282 (47%), Gaps = 63/282 (22%)
Query: 1 MATQALVSSSLT---SSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPL 57
MA+ L+SS+++ S + +++ + S G++ F + A P G RP
Sbjct: 1 MASNTLMSSAISAFPSLLSSSKSRFATAAPLSCFGTNASSRFSMTADWMP----GQPRP- 55
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
YLDGS PGD+GFDPL L + PE F E E+I+ R+AML G
Sbjct: 56 --------PYLDGSAPGDFGFDPLRLGEVPENLERFKE------SELIHCRWAMLAVPGI 101
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + A W P G Y +P T+ +E + F EH
Sbjct: 102 LVPEALGLGNWV---KAQEWAAL----PGGQATYLGNPVPRGTLPTVLAIEFLAISFVEH 154
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R SM + DP YPGG F+PLG KD K ++K+KE
Sbjct: 155 QR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKFHEYKVKE 191
Query: 228 VKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 192 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 108/211 (51%), Gaps = 41/211 (19%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
++LDGS PGD+GFDPLGL+ PE F E EV + R+AML G + PE LG
Sbjct: 8 AHLDGSSPGDFGFDPLGLATVPENFERFKE------SEVYHCRWAMLAVPGILVPEALGL 61
Query: 125 AGLIPQETALAWFQTGVIPPAGTYNY------WADPYTLFVLEMALMGFAEHRRFQDWAN 178
+ A W P G Y W T+ V+E + FAEH+R + +
Sbjct: 62 GNWV---KAQEWAAV----PGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTME-KD 113
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
P +KY GG+ F+PLG KD +++KLKE+KNGRLAMLA
Sbjct: 114 PEK---------KKYPGGA----------FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAF 154
Query: 239 LGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
+G+ V Q G GP +NL HLADP +NN+
Sbjct: 155 VGFCVQQSAYPGTGPLENLASHLADPWHNNI 185
>gi|413922348|gb|AFW62280.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 224
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 114/225 (50%), Gaps = 26/225 (11%)
Query: 17 TARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGAD---RPLWFASKQSLSYLDGSLP 73
TAR + A S + S + R A+ P ++ + W S +YLDGSLP
Sbjct: 5 TARAPVAALRPSSSSAFLGHSSRLGRTATASPTRRSLKAEAKGEWLPGLPSPAYLDGSLP 64
Query: 74 GDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQET 132
GD GFDPLGL+ DPE +W E++NGR+AMLG G + PE+L KAGLI
Sbjct: 65 GDNGFDPLGLAEDPENL------RWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLI---N 115
Query: 133 ALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK 192
A W+ AG Y+A TLFV+E L + E RR+QD NPGS+ + F+
Sbjct: 116 APQWYD------AGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKS 167
Query: 193 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLA 237
Y + YPG +FNPL ++ K KE+ NG L +A
Sbjct: 168 YSLPPHECGYPGS-VFNPLNFAPTLEA----KEKELANGELHCIA 207
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 192 KYLGGSGDPAY-----PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 246
++L G PAY PG F+PLGL +D ++++ + E+ NGR AML + G + +
Sbjct: 48 EWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEV 107
Query: 247 VTGVG 251
+T G
Sbjct: 108 LTKAG 112
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 117/242 (48%), Gaps = 50/242 (20%)
Query: 38 SFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPK 96
SF V AS+ AD W + YLDGS PGD+GFDPL L + PE F E
Sbjct: 27 SFGVTNASSSRFSMSAD---WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKE-- 81
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY- 155
E+I+ +AML G + PE LG + A W P G Y +P
Sbjct: 82 ----SELIHCGWAMLAVPGILVPEALGLGNWV---KAQEWAAV----PGGQATYLGNPVP 130
Query: 156 -----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPL 207
T+ +E + F EH+R SMG+ DP YPGG
Sbjct: 131 WGTLPTILAIEFLAISFVEHQR--------SMGK--------------DPEKKKYPGG-A 167
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNN 266
F+PLG KD K+ ++K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +N
Sbjct: 168 FDPLGYSKDPKTFHEYKVKELKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHLADPWHN 227
Query: 267 NV 268
N+
Sbjct: 228 NI 229
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 111/222 (50%), Gaps = 47/222 (21%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + +YLDGS PGD+GFDPLGL + PE + E E+I+ R+AML G
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKE------SELIHCRWAMLAVPGI 101
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + A W P G Y +P T+ +E + F EH
Sbjct: 102 LVPEALGYGNWV---KAQEWAAV----PGGQATYLGNPVPWGTLPTILAIEFLAIAFVEH 154
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R SM + DP YPGG F+PLG KD K +++ K+KE
Sbjct: 155 QR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKLEELKVKE 191
Query: 228 VKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 192 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|193872600|gb|ACF23028.1| ST49-6 [Eutrema halophilum]
Length = 215
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 105/200 (52%), Gaps = 28/200 (14%)
Query: 34 SRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGF 92
SR + V A+ P +RP+WF +LDGSLPGD+GFDPLGL SDP+
Sbjct: 42 SRSAALVRAVAADP------ERPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSL--- 92
Query: 93 IEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWA 152
KW A E+++ R+AMLGA G PE L K G++ +W+ AG Y+
Sbjct: 93 ---KWNAQAELVHCRWAMLGAAGIFIPEFLTKIGIL---NTPSWYT------AGEQEYFT 140
Query: 153 DPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLG 212
D TLFV+E+ L+G+AE RR+ D PGS+ K G D YPGG F+PL
Sbjct: 141 DKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTG--TDVGYPGGLWFDPLV 198
Query: 213 LGKDEKSMKDFKLKEVKNGR 232
G + K+KE++ R
Sbjct: 199 WGSGSPA----KIKELRTKR 214
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 117/245 (47%), Gaps = 42/245 (17%)
Query: 33 SSRKGS----FVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PE 87
SSR G F A ++ V A+ WF + ++LDGS PGD+GFDPLGL+ PE
Sbjct: 22 SSRSGRSGLPFCAYATTSGRVTMSAE---WFPGQPRPAHLDGSSPGDFGFDPLGLATVPE 78
Query: 88 GTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGT 147
F E E+ + R+AML G + PE LG + + A G G
Sbjct: 79 NFERFKE------SEIYHCRWAMLCVPGVLVPEALGLGNWV-KAQEWAALPDGQATYLGN 131
Query: 148 YNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPG 204
W + T+ +E + FAE +R + DP YPG
Sbjct: 132 PVPWGNLPTILAIEFLAIAFAEQQRTME----------------------KDPEKKKYPG 169
Query: 205 GPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADP 263
G F+PLG KD ++ KLKE+KNGRLAMLA +G+ V Q G GP +NL HLADP
Sbjct: 170 G-AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADP 228
Query: 264 VNNNV 268
+NN+
Sbjct: 229 WHNNI 233
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 98/175 (56%), Gaps = 28/175 (16%)
Query: 102 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP------ 154
EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 12 EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQ 69
Query: 155 --YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLG 212
++ ++ LMG E R P LG DP YPGG F+PLG
Sbjct: 70 SILAIWACQVVLMGAVEGYRIA--GGP--------------LGEITDPLYPGGS-FDPLG 112
Query: 213 LGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
L D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 113 LADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 167
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 117/252 (46%), Gaps = 53/252 (21%)
Query: 33 SSRKGSFVVRAASTPPVKQGADRPL--------WFASKQSLSYLDGSLPGDYGFDPLGLS 84
SS K F A+ PV GA + W + SYLDGS PGD+GFDPLGL
Sbjct: 20 SSTKSKF----AAAMPVSVGATNSMSRFSMSADWMPGQPRPSYLDGSAPGDFGFDPLGLG 75
Query: 85 D-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIP 143
+ P + E E+I+ R+AML G I PE LG + A W
Sbjct: 76 EVPANLERYKE------SELIHCRWAMLAVPGIIVPEALGLGNWV---KAQEWAAI---- 122
Query: 144 PAGTYNYWADPY------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGS 197
P G Y P T+ +E + F EH+R SM + S
Sbjct: 123 PGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKD-----------S 163
Query: 198 GDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNL 256
YPGG F+PLG KD ++ K+KE+KNGRLA+LA +G+ V Q G GP +NL
Sbjct: 164 EKKKYPGG-AFDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 222
Query: 257 LDHLADPVNNNV 268
HLADP +NN+
Sbjct: 223 ATHLADPWHNNI 234
>gi|15231990|ref|NP_187506.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|38503262|sp|Q9XF88.1|CB4B_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.2,
chloroplastic; AltName: Full=LHCB4.2; AltName:
Full=LHCII protein 4.2; Flags: Precursor
gi|4741954|gb|AAD28774.1|AF134127_1 Lhcb4.2 protein [Arabidopsis thaliana]
gi|6403491|gb|AAF07831.1|AC010871_7 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473745|gb|AAL38316.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148559|gb|AAM10170.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332641177|gb|AEE74698.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 287
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 132/315 (41%), Gaps = 87/315 (27%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
M T+ + S SS TAR G + A S +K V+ +DRPLWF
Sbjct: 14 MGTRVVSDISSNSSRFTARFGFGTKKA-----SPKKAKTVI-----------SDRPLWFP 57
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF------------------------IEPK 96
+S YLDGSL GDYGFDP GL P F ++PK
Sbjct: 58 GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPK 117
Query: 97 WLAY--------------GEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVI 142
+ E+I+GR+AML +GAI E L T + W G +
Sbjct: 118 STPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL---------TGVTWQDAGKV 168
Query: 143 PPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGS 197
+Y P TL +E+ ++G+ E +R + L EK L
Sbjct: 169 ELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE------------LDSEKRL--- 213
Query: 198 GDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLL 257
YPGG F+PLGL D +L E+K+ RLAM+ LG+ VQ TG GP N
Sbjct: 214 ----YPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWA 269
Query: 258 DHLADPVNNNVLTSL 272
HL+DP++ ++ +
Sbjct: 270 THLSDPLHTTIIDTF 284
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 110/223 (49%), Gaps = 49/223 (21%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + YLDGS PGD+GFDPL L + PE + E E+I+ R+AML G
Sbjct: 48 WLPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGI 101
Query: 117 IAPEILGKAGLIP-QETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAE 169
+ PE LG + QE A A P G Y P T+ +E + F E
Sbjct: 102 LIPEALGLGNWVKAQEWAAA--------PGGQATYLGQPVPWGTLPTVLAIEFVAIAFVE 153
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLK 226
H+R SM + DP YPGG F+PLG KD K +++K+K
Sbjct: 154 HQR--------SMEK--------------DPEKKKYPGG-AFDPLGFSKDPKKFEEYKVK 190
Query: 227 EVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
E+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 191 EIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 133/264 (50%), Gaps = 31/264 (11%)
Query: 21 ILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSL-------------SY 67
++ + PT ++++ V+AA P V Q A W+ + L SY
Sbjct: 59 VVKTTPVKKPTPATKRAP--VKAARQP-VDQKAAIAKWYGPNRKLYLPGGLLTKADLPSY 115
Query: 68 LDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGL 127
LDG+L GDYGFDPLGL G G ++ +A E+++ R+AML G + PE L G
Sbjct: 116 LDGTLAGDYGFDPLGL----GADGKVKDYRVA--EILHARWAMLAVPGVVIPEALNIPGG 169
Query: 128 IPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYF 187
+ ET F G +W +++ LMG AE R QD P G F
Sbjct: 170 VWTETGKV-FLDGETGRDSILEFWP---IYAAIQVVLMGGAEKFR-QDGVGPA--GFVPF 222
Query: 188 LG-FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 246
G FE+ DP PGGPL + + K+ + ++ K+KE+KNGRLAM+A+LG FVQG
Sbjct: 223 KGKFEESAFNGLDPVNPGGPL-DFFDVAKNPQDLQILKVKEIKNGRLAMIAMLGVFVQGA 281
Query: 247 VTGVGPYQNLLDHLADPVNNNVLT 270
VTG GP N H+A+P N +T
Sbjct: 282 VTGEGPAANWGKHVANPFGYNFVT 305
>gi|125605837|gb|EAZ44873.1| hypothetical protein OsJ_29513 [Oryza sativa Japonica Group]
Length = 241
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 96/169 (56%), Gaps = 18/169 (10%)
Query: 52 GADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAM 110
G DRPLWF +LDGSLPGD+GFDPLGL SDPE +W A E+++ R+AM
Sbjct: 21 GPDRPLWFPGSSPPPWLDGSLPGDFGFDPLGLGSDPELL------RWFAQAELMHSRWAM 74
Query: 111 LGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEH 170
L G + PE+L K G + +W AG +Y+ADP+TLFV +MALMG+AE
Sbjct: 75 LAVAGILVPEVLEKWGFM---EDYSWID------AGARDYFADPWTLFVSQMALMGWAEG 125
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
RR+ D+ NPG + + L + D YPGG F+ G+ +S
Sbjct: 126 RRWADYLNPGCVAVEPRLPNRR--NPVPDVGYPGGLWFDWGNWGRGSRS 172
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL-- 256
D + PG F+PLGLG D + ++ F E+ + R AMLA+ G V ++ G ++
Sbjct: 38 DGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVPEVLEKWGFMEDYSW 97
Query: 257 -----LDHLADP 263
D+ ADP
Sbjct: 98 IDAGARDYFADP 109
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 124/282 (43%), Gaps = 71/282 (25%)
Query: 34 SRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP------- 86
+R G +AA K ADRPLW+ ++ YLDGSL GDYGFDP GL P
Sbjct: 31 ARFGFRTKKAAPKKFSKPSADRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPVEYLQYD 90
Query: 87 ------------------------EGTGGFIEPKWLAYG-------EVINGRYAMLGAVG 115
E +P +G E+I+GR+AML +G
Sbjct: 91 LDSLDQNLAKNMAGDIIGTRVESSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLG 150
Query: 116 AIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEH 170
A++ E L T + W G + +Y P TL +E+ L+G+ E
Sbjct: 151 ALSVEWL---------TGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLLIGYIEF 201
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
+R + L EK L YPGG F+PLGL D + +L E+K+
Sbjct: 202 QRNAE------------LDPEKRL-------YPGGKFFDPLGLAADPEKKATLQLAEIKH 242
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
RLAM+ LG+ VQ VTG GP N HL+DP++ ++ +L
Sbjct: 243 ARLAMVGFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTL 284
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 131/267 (49%), Gaps = 53/267 (19%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
+ +A VS T VE R + A A +P SF G +RPL+
Sbjct: 9 SARAAVSRRSTVKVEARRTVKPASKASTPD------SFWY----------GPERPLFLGA 52
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
+ + SYL G PGDYG+D GLS DPE + E E+I+ R+AMLGA+G I
Sbjct: 53 FTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWAMLGALGCIF 106
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+LG G +P A+ WF+ G I G +Y +P + ++ LMG E
Sbjct: 107 PELLGSYG-VPFGEAV-WFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIE 164
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R N G +G D YPGG F+PLGL D + + K+KE+K
Sbjct: 165 GYR----VNGGPLGEGL------------DKLYPGGS-FDPLGLADDPDTFAELKVKEIK 207
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNL 256
NGRLAM ++ G+FVQ +VTG GP QNL
Sbjct: 208 NGRLAMFSMFGFFVQAIVTGKGPLQNL 234
>gi|218199895|gb|EEC82322.1| hypothetical protein OsI_26601 [Oryza sativa Indica Group]
Length = 432
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 113/214 (52%), Gaps = 36/214 (16%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQS 64
A SS L + + R +L R A+S SS + SF VRAA+ DRP+WF
Sbjct: 20 ARASSFLGGAGRSGRLLL--RQAES---SSARASFAVRAAA-------PDRPIWFPGSTP 67
Query: 65 LSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILG 123
+LDGSLPGD+GFDPLGL SDPE +W E+++ R+AMLGA G PE L
Sbjct: 68 PPWLDGSLPGDFGFDPLGLGSDPESL------RWNVQAELVHCRWAMLGAAGIFIPEFLT 121
Query: 124 KAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMG 183
K G++ +W+ AG Y+ D TLF++E+ L+G+AE RR+ D PG +G
Sbjct: 122 KIGIL---NTPSWYT------AGEQQYFTDTTTLFIIELILIGWAEGRRWADIIKPGCVG 172
Query: 184 RQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 217
G GG+ + G P+FN + K E
Sbjct: 173 -----GVTPKKGGT---EHLGLPVFNSVAEAKAE 198
>gi|159465641|ref|XP_001691031.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158279717|gb|EDP05477.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 246
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 117/238 (49%), Gaps = 43/238 (18%)
Query: 34 SRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFI 93
SR + V R + + RP+W+ + ++LDGS+ GDYGFDPL L +
Sbjct: 7 SRVSAGVSRPSRATVRVSASTRPMWYPGATAPAHLDGSMLGDYGFDPLRLGVNKDN---- 62
Query: 94 EPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD 153
KW E+ NGR+AM VG + + +G +P+ F T AG Y D
Sbjct: 63 -LKWFREAELTNGRWAMAAVVGILFTDAVG----LPK------FWT-----AGAEKYALD 106
Query: 154 PYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGL 213
TL ++E+A+ E +R++ + G G FL F F+P+G+
Sbjct: 107 NQTLALIEVAVFAVLEGKRYEIYKKTGETG---FLSFAP---------------FDPMGM 148
Query: 214 GKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
+E KLKE+KNGRLAMLA LG+ Q V G GP + L HLADP +NN+ TS
Sbjct: 149 KSEE-----MKLKELKNGRLAMLAFLGFCSQAAVYGKGPIETLQLHLADPGHNNIYTS 201
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 109/213 (51%), Gaps = 34/213 (15%)
Query: 68 LDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAG 126
L G PGDYG+D GLS DPE + E E+I+ R+AMLGA+G + PEIL + G
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRET------ELIHARWAMLGALGCVTPEILARYG 54
Query: 127 LIPQETALAWFQTGV-IPPAGTYNYWADPY--------TLFVLEMALMGFAEHRRFQDWA 177
++ WF+ G I G +Y P + + ++ LMG E R
Sbjct: 55 GTSFGESV-WFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYR----V 109
Query: 178 NPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLA 237
N G G DP YPG F+PLGL D + + K+KE+KNGRLAM +
Sbjct: 110 NGGPAGEGL------------DPLYPG-ESFDPLGLADDPDTFAELKIKEIKNGRLAMFS 156
Query: 238 ILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
+ G++VQ +VTG GP +N +H+ADP N +
Sbjct: 157 MFGFYVQAIVTGKGPVENWAEHVADPFTANAFS 189
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 118/251 (47%), Gaps = 54/251 (21%)
Query: 33 SSRKGS----FVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PE 87
SSR G F A ++ V A+ WF + ++LDGS PGD+GFDPLGL+ PE
Sbjct: 24 SSRSGRSGLPFCAFATTSGRVTMSAE---WFPGQPRPAHLDGSSPGDFGFDPLGLATVPE 80
Query: 88 GTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGT 147
F E E+ + R+AML G + PE LG + + A P G
Sbjct: 81 NFERFKE------SEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAAL-------PDGQ 127
Query: 148 YNY------WADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDP- 200
Y W + T+ +E + FAE +R + DP
Sbjct: 128 ATYFGVPVPWGNLPTILAIEFLAIAFAEQQRTME----------------------KDPE 165
Query: 201 --AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLL 257
YPGG F+PLG KD ++ KLKE+KNGRLAMLA +G+ V Q G GP +NL
Sbjct: 166 KKKYPGG-AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLG 224
Query: 258 DHLADPVNNNV 268
HLADP +NN+
Sbjct: 225 AHLADPWHNNI 235
>gi|302833175|ref|XP_002948151.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300266371|gb|EFJ50558.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 247
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 117/233 (50%), Gaps = 46/233 (19%)
Query: 41 VRAASTPPVKQGAD-RPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWL 98
VR + V+ A RP+W+ + +LDG++ GDYGFDPL L ++PE + KW
Sbjct: 14 VRPSRATAVRVSASTRPMWYPGATAPKHLDGTMLGDYGFDPLRLGTNPE------QLKWF 67
Query: 99 AYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLF 158
E+ NGR+AM G + +++G +P+ W AG Y D TL
Sbjct: 68 REAELTNGRWAMAAVAGILFTDLVG----LPK----FWL-------AGAEKYALDTPTLA 112
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
++E+A+ E +R+ + G G FL F F+PLG+ +E
Sbjct: 113 LIEVAVFAVLEGKRYDIYKKTGETG---FLSFAP---------------FDPLGMKSEE- 153
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
KLKE+KNGRLAMLA +G+ Q V G GP + L DH+ADP + N+ TS
Sbjct: 154 ----MKLKELKNGRLAMLAFVGFCSQAAVRGKGPIECLTDHIADPGHVNIYTS 202
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 122/274 (44%), Gaps = 71/274 (25%)
Query: 42 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF--------- 92
+ A +K DRPLW+ ++ YLDGSL GDYGFDP GL P F
Sbjct: 36 KKAPKKSIKTIPDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNL 95
Query: 93 ----------------------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILG 123
+P +G E+I+GR+AML +GA++ E L
Sbjct: 96 AKNLAGDIIGTRTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWL- 154
Query: 124 KAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWAN 178
T + W G + +Y P TL ++E+ ++G+ E +R +
Sbjct: 155 --------TGVTWQDAGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQRNAE--- 203
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L EK L YPGG F+PLGL D + +L E+K+ RLAM+A
Sbjct: 204 ---------LDPEKRL-------YPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAF 247
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+ VQ VTG GP N HL+DP++ ++ +L
Sbjct: 248 LGFAVQAWVTGKGPLNNWATHLSDPLHTTIIDTL 281
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 121/254 (47%), Gaps = 57/254 (22%)
Query: 33 SSRKGSFV-VRAASTPPVK-----------QGADRPLWFA-SKQSLSYLDGSLPGDYGFD 79
S+RK +F RA+ P K Q A+R LW S + ++LDG+LPGD+GFD
Sbjct: 16 SARKANFAGSRASFAAPAKAPVSARASLKVQAANRELWLKDSTVAPAHLDGTLPGDFGFD 75
Query: 80 PLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQ 138
PLGL +DPE K+ E++N R+AM+ G EILG G W++
Sbjct: 76 PLGLGADPE------RLKYYQEAELMNARWAMMAVAGICTTEILGIGG--------PWYE 121
Query: 139 TGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSG 198
AG Y L ++ +MG E RR + W G G
Sbjct: 122 ------AGAAEYDLPINALLAVQFPVMGILELRRIRGWLATGKSGV-------------- 161
Query: 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLD 258
+ +P ++P+G+ D+ + LKEVKNGRLAM+A +G VQ +V GP L D
Sbjct: 162 NETFP----WDPMGMNGDQMA-----LKEVKNGRLAMIAFVGIVVQAIVYRTGPVAALKD 212
Query: 259 HLADPVNNNVLTSL 272
H+ DP N+ T++
Sbjct: 213 HITDPFGCNMATNI 226
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 106/219 (48%), Gaps = 41/219 (18%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + SYLDGS PGD+GFD LGL + P + E E+I+ R+AML G
Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKE------SELIHCRWAMLAVPGI 102
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
I PE LG + A W P G Y P T+ +E + F EH
Sbjct: 103 IVPEALGLGNWV---KAQEWAAI----PGGQATYLGQPVPWGTLPTILAIEFLAIAFVEH 155
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
+R SM + S YPGG F+PLG KD ++ K+KE+KN
Sbjct: 156 QR--------SMEKD-----------SEKKKYPGG-AFDPLGYSKDPAKFEELKVKEIKN 195
Query: 231 GRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
GRLA+LAI+G+ V Q G GP +NL HLADP +NN+
Sbjct: 196 GRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 110/222 (49%), Gaps = 47/222 (21%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + +YLDGS PGD+GFDPLGL + P + E E+I+ R+AML G
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKE------SELIHCRWAMLAVPGI 101
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + A W P G Y +P T+ +E + F EH
Sbjct: 102 LVPEALGYGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTILAIEFLAIAFVEH 154
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R SM + DP YPGG F+PLG KD K +++ K+KE
Sbjct: 155 QR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKLEELKVKE 191
Query: 228 VKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 192 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 117/227 (51%), Gaps = 24/227 (10%)
Query: 52 GADRPLWFA----SKQSL-SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVING 106
G DR L+ +K L SYLDG+L GDYGFDPLGL G G I K EVI+
Sbjct: 104 GPDRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGL----GADGAI--KQYRVAEVIHA 157
Query: 107 RYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMG 166
R+AML G + PE LG G + ET + G + +P +++ALM
Sbjct: 158 RWAMLAIPGVVIPEALGLPGGVWTETGKVFLDGET----GRPFFLENPIVFAAVQVALMA 213
Query: 167 FAEHRRFQDWANPGSMGRQYFLG-FEKYLGGSGDPAYPGGPL--FNPLGLGKDEKSMKDF 223
E R + G G F G F++ DP PGGPL FN + + + +
Sbjct: 214 GVEQFRS---SGEGPAGFVPFKGKFDESAFKGLDPINPGGPLDFFN---VASNPQDLALL 267
Query: 224 KLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
K+KE+KNGRLAM+A+LG FVQGL TG GP N H+ADP N +T
Sbjct: 268 KVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYNFVT 314
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 124/284 (43%), Gaps = 74/284 (26%)
Query: 32 GSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP----- 86
G RK + +A+ PP DRPLWF Q+ YLDG+L GDYGFDP GL P
Sbjct: 34 GLGRKKAPAKKASRAPPT---TDRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQ 90
Query: 87 ----------------EGTGGFIE----------PKWLAYG-------EVINGRYAMLGA 113
E G E P +G E+I+GR+AML
Sbjct: 91 YDPDSLDQNLAQNLAGEVIGTRFEDADIKSTPLQPYAEVFGLQRFRECELIHGRWAMLAT 150
Query: 114 VGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFA 168
+GA+ E L T + W G + +Y P TL +E+ ++G+
Sbjct: 151 LGALTVEWL---------TGVTWQDAGKVELVDGSSYLGQPLPFTITTLIWIEVLVIGYI 201
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E +R + L EK L YPGG F+PLGL D + + +L E+
Sbjct: 202 EFQRNAE------------LDPEKRL-------YPGGSYFDPLGLAADPEKKERLQLAEI 242
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
K+ RLAM+ LG+ VQ TG GP N HL+DP++ + +L
Sbjct: 243 KHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTL 286
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 110/222 (49%), Gaps = 47/222 (21%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + +YLDGS PGD+GFDPLGL + P + E E+I+ R+AML G
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKE------SELIHCRWAMLAVPGI 101
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + A W P G Y +P T+ +E + F EH
Sbjct: 102 LVPEALGYGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTILAIEFLAIAFVEH 154
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R SM + DP YPGG F+PLG KD K +++ K+KE
Sbjct: 155 QR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKLEELKVKE 191
Query: 228 VKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 192 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 122/274 (44%), Gaps = 71/274 (25%)
Query: 42 RAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF--------- 92
+ A +K DRPLW+ ++ YLDGSL GDYGFDP GL P F
Sbjct: 36 KKAPKKSIKTIPDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNL 95
Query: 93 ----------------------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILG 123
+P +G E+I+GR+AML +GA++ E L
Sbjct: 96 AKNLAGDIIGTRTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWL- 154
Query: 124 KAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWAN 178
T + W G + +Y P TL ++E+ ++G+ E +R +
Sbjct: 155 --------TGVTWQDAGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQRNAE--- 203
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
L EK L YPGG F+PLGL D + +L E+K+ RLAM+A
Sbjct: 204 ---------LDPEKRL-------YPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAF 247
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
LG+ VQ VTG GP N HL+DP++ ++ +L
Sbjct: 248 LGFAVQAWVTGKGPLNNWATHLSDPLHTTIIDTL 281
>gi|145346713|ref|XP_001417828.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144578056|gb|ABO96121.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 185
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 119/219 (54%), Gaps = 45/219 (20%)
Query: 57 LWF-ASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAV 114
+W A ++ ++LDG++ GDYGFDPLGL SDP K+ E++N R+AM+
Sbjct: 1 MWLPAPYKAPAHLDGTVAGDYGFDPLGLGSDP------TRLKYYQEAELMNARWAMMAVA 54
Query: 115 GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQ 174
G + EI AG+ P+ W++ AGT +Y P L +++ +MG+ E++R Q
Sbjct: 55 GIVGTEI---AGIEPR-----WWE------AGTEDYGFPPQALLAVQLPVMGYLENKRIQ 100
Query: 175 DWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMKDFKLKEVKNGRL 233
W GS G + +P F+P+G+G KDEK KLKE+KNGR
Sbjct: 101 GWLATGSSGV--------------NETFP----FDPMGMGSKDEK----MKLKEIKNGRA 138
Query: 234 AMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
AM+A +G VQG+V GP L DH+A+P N+ T++
Sbjct: 139 AMIAFVGIVVQGIVYREGPVAALKDHVANPFGCNMATNI 177
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 112/228 (49%), Gaps = 32/228 (14%)
Query: 43 AASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYG 101
AA + V AD W + YLDGS PGD+GFDPL L + PE + E
Sbjct: 36 AAGSARVTMSAD---WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------S 86
Query: 102 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLE 161
E+I+ R+AML G + PE LG + Q A G G W + T+ +E
Sbjct: 87 ELIHCRWAMLAVPGVLVPEALGLGNWV-QAQEWAAIPGGQATYLGNPVPWGNLPTILAIE 145
Query: 162 MALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMK 221
+ F EH+R SM + + YPGG F+PLG KD +
Sbjct: 146 FLAIAFVEHQR--------SMEKD-----------TEKKKYPGG-AFDPLGYSKDPVKFE 185
Query: 222 DFKLKEVKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
++K+KE+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 186 EYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 233
>gi|11762172|gb|AAG40364.1|AF325012_1 AT3g47470 [Arabidopsis thaliana]
Length = 148
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 94/164 (57%), Gaps = 16/164 (9%)
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 169
MLG G + PE+ K G+I W+ AG Y+A TLFV+E L + E
Sbjct: 1 MLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVE 51
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
RR+QD NPGS+ + F++Y G+ YPGG +FNPL +++ K KE+
Sbjct: 52 IRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGG-IFNPLNFAPTQEA----KEKELA 104
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
NGRLAMLA LG+ VQ VTG GP++NLL HL+DP +N ++ +
Sbjct: 105 NGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN 148
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 133/285 (46%), Gaps = 34/285 (11%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
A QAL S L ++ R + +S R+ +P G +RP W
Sbjct: 24 AVQALADSDLGKKLQ--RDLEANKSEYKRAEQQREKELAAARDESPWY--GEERPKWLGP 79
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S +YL G PGDY +DPL L+ D + + E E+++ R+AMLGA+GA
Sbjct: 80 LSYDYPAYLRGGAPGDYAYDPLQLAQDQDKFDQYFE------FELLHARWAMLGALGAGI 133
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP----------YTLFVLEMALMGFA 168
PEIL +G+ A W G NY + + ++ LM
Sbjct: 134 PEILQYSGVSDFLEARWWAVGGAKLQGEDLNYLGVSGLRIAGGQGIAIIAICQVLLMFGP 193
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E+ R + G + YL GD YPGG LF+PLGL KD S D ++KE+
Sbjct: 194 EYAR--------ACGIEALEPLGLYL--PGDKNYPGG-LFDPLGLSKDPASFADLQVKEI 242
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
KNGRLA++A +G+ Q VT GP +LLD ADPV+NN+ L+
Sbjct: 243 KNGRLALVAWVGFAAQAAVTRKGPIADLLDFAADPVHNNIFAYLR 287
>gi|297829418|ref|XP_002882591.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
gi|297328431|gb|EFH58850.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 115/263 (43%), Gaps = 71/263 (26%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF-------------------- 92
+DRPLWF +S YLDGSL GDYGFDP GL P F
Sbjct: 50 SDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGT 109
Query: 93 ----IEPKWLAY--------------GEVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
++PK + E+I+GR+AML +GAI E L T +
Sbjct: 110 RTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL---------TGV 160
Query: 135 AWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
W G + +Y P TL +E+ ++G+ E +R + L
Sbjct: 161 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVVGYIEFQRNAE------------LD 208
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
EK L YPGG F+PLGL D + +L E+K+ RLAM+ LG+ VQ TG
Sbjct: 209 SEKRL-------YPGGKFFDPLGLASDPEKKAQLQLAEIKHARLAMVGFLGFAVQAAATG 261
Query: 250 VGPYQNLLDHLADPVNNNVLTSL 272
GP N HL+DP++ ++ +
Sbjct: 262 KGPLNNWATHLSDPLHTTIIDTF 284
>gi|302807871|ref|XP_002985629.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146538|gb|EFJ13207.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 121/265 (45%), Gaps = 72/265 (27%)
Query: 52 GADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF------------------- 92
GA+RPLWF + YLDGSL GDYGFDPLGL P F
Sbjct: 61 GANRPLWFPGAKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLG 120
Query: 93 -------------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQET 132
++P +G E+I+GR+AML +GAIA E T
Sbjct: 121 ERVEDLSTIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETF---------T 171
Query: 133 ALAWFQTGVIP--PAGTYNYWADPYTLFVL---EMALMGFAEHRRFQDWANPGSMGRQYF 187
+ W G + +Y ++ P+T+ L E+ ++GF E +R +
Sbjct: 172 GVTWQDAGKVELDQGPSYFGFSLPFTITALVWIEVLVIGFIEFQRNTE------------ 219
Query: 188 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
L EK L YPGG F+PLGL D + + KL E+K+ RLAM+A G+ VQ
Sbjct: 220 LDPEKRL-------YPGGSYFDPLGLAADPERKEVLKLAEIKHARLAMVAAFGFAVQAAA 272
Query: 248 TGVGPYQNLLDHLADPVNNNVLTSL 272
TG GP N + HL+DP++ ++ +
Sbjct: 273 TGKGPLDNWVTHLSDPLHTTIIDTF 297
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 109/222 (49%), Gaps = 47/222 (21%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + +YLDGS PGD+GFDPLGL + PE + E E+I+ R+AML G
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKE------SELIHCRWAMLAVPGI 101
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + A W P G Y +P T+ +E + F EH
Sbjct: 102 LVPEALGYGNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTILAIEFLAIAFVEH 154
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R SM + DP YPGG F+PLG KD K ++ K+KE
Sbjct: 155 QR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKFEELKVKE 191
Query: 228 VKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
+KNGRLA+LA +G+ V Q G GP +NL HLADP + N+
Sbjct: 192 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHKNI 233
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 96/175 (54%), Gaps = 26/175 (14%)
Query: 102 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV- 159
EVI+GR+AMLGA+G I PE+L K + + + WF+ G I G +Y +P +
Sbjct: 75 EVIHGRWAMLGALGCITPEVLEKWLRVDFKEPI-WFKAGAQIFSEGGLDYLGNPNLVHAQ 133
Query: 160 -------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLG 212
++ LMG E R PG G G+ YPGG F+PLG
Sbjct: 134 SILAVLGFQVVLMGLVEGFRINGL--PGV--------------GDGNNLYPGGQYFDPLG 177
Query: 213 LGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
L D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 178 LADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 232
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 133/259 (51%), Gaps = 29/259 (11%)
Query: 17 TARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDY 76
T R+++ +++ G + + +F V AA++ QG R LW ++ SYL+G L GDY
Sbjct: 16 TGRKVV----SKARAGPAPRSTFQVSAAAS----QG--RRLWAPGVEAPSYLNGELAGDY 65
Query: 77 GFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALA 135
G+DPLGL + PE KW E+++ R+AML G +A EI+ K G+ L
Sbjct: 66 GWDPLGLGAKPEAL------KWYRQAELVHARWAMLAVAGILAQEIV-KPGVFFYNAGLP 118
Query: 136 WFQTGVI--PPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKY 193
G+ P G N L E L + E RR+QD S+ + K
Sbjct: 119 ENLPGINFGGPEGKVNLGG----LLAWEFLLFHWVEVRRWQDIKKKDSVNQDPIFKGNKV 174
Query: 194 LGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 253
+ + YPGG +F+P G K + K+ + KE+KNGRLAM+A +G+ +Q TG GP
Sbjct: 175 --PNPELGYPGG-IFDPFGFSKG--NFKEVQTKEIKNGRLAMVAFVGFIIQAQATGQGPL 229
Query: 254 QNLLDHLADPVNNNVLTSL 272
NL HLA+P NN+ ++
Sbjct: 230 ANLGAHLANPFGNNITKNI 248
>gi|454250|emb|CAA82853.1| light-harvesting chlorophyll a/b binding protein [Trifolium repens]
Length = 167
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 95/174 (54%), Gaps = 28/174 (16%)
Query: 103 VINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP------- 154
VI+ R+AMLGA+G PEIL K G+ E WF+ G I G +Y +P
Sbjct: 1 VIHSRWAMLGALGCTFPEILEKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQS 58
Query: 155 -YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGL 213
++ ++ LMGF E R P LG DP YPGG F+PLGL
Sbjct: 59 ILAIWATQVVLMGFVEGYRIG--GGP--------------LGEGLDPLYPGGA-FDPLGL 101
Query: 214 GKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP QNL DHLADPV NN
Sbjct: 102 ADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHLADPVANN 155
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 107/222 (48%), Gaps = 47/222 (21%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + YLDGS PGD+GFDPLGL + P + E E+I+ R+AML G
Sbjct: 49 WMPGQPRPPYLDGSAPGDFGFDPLGLGEVPSNLERYKE------SELIHCRWAMLAVPGI 102
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + A W P G Y P T+ +E + F EH
Sbjct: 103 LVPEALGLGNWV---KAQEWAAI----PGGQATYLGQPVPWGTLPTILAIEFLAIAFVEH 155
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R SM + DP YPGG F+PLG KD K ++ K+KE
Sbjct: 156 QR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKFEELKVKE 192
Query: 228 VKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
+KNGRLA+LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 193 IKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 106/222 (47%), Gaps = 47/222 (21%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + YLDGS PGD+GFDPL L + PE F E E+I+ R+AML G
Sbjct: 48 WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKE------SELIHCRWAMLAVPGI 101
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + A W P G Y P T+ V+E + F EH
Sbjct: 102 LVPEALGLGNWV---KAQEWAAI----PGGQATYLGQPVPWGTLPTILVIEFLAIAFVEH 154
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R SM + DP YPGG F+PLG KD ++K+KE
Sbjct: 155 QR--------SMEK--------------DPEKKKYPGG-AFDPLGYSKDPAKFHEYKVKE 191
Query: 228 VKNGRLAMLAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
+KNGRLA+LA +G V Q G GP +NL HLADP +NN+
Sbjct: 192 IKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 109/223 (48%), Gaps = 40/223 (17%)
Query: 52 GADRPLW---FASKQSL-SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGR 107
G +RPLW F + + YL G PGDYG D L+ + + E++NGR
Sbjct: 27 GPNRPLWKGPFTKPKDVPEYLKGEYPGDYGCDIFKLARLPANYARLRTQ-----ELMNGR 81
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTG--VIPPAGTYNYWADP--------YTL 157
+AMLG G + PE++ E WF TG + AG +Y P + +
Sbjct: 82 WAMLGITGCLTPELINSNSTPGFEPV--WFNTGAQIFSDAGI-DYLGVPGFINAHSLFAV 138
Query: 158 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 217
V++ LMG AE+ R K++ DP YPGG F+PLG D
Sbjct: 139 IVVQALLMGLAEYARI------------------KFVPEGADPFYPGGKTFDPLGFSSDP 180
Query: 218 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
+ + + K+KE+KNGRLAM+A+ G F QG VTGV P QNL D L
Sbjct: 181 EILAELKVKEIKNGRLAMMAMAGLFAQGAVTGVSPLQNLHDWL 223
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 106/219 (48%), Gaps = 41/219 (18%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + YLDGS PGD+GFDPL L + PE + E E+I+ R+AML G
Sbjct: 47 WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGI 100
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + A W T P G Y P + +E + F EH
Sbjct: 101 LVPEALGLGNWV---KAQEWAAT----PGGQATYLGQPVPWGTLPIILAIEFVAIAFVEH 153
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
+R SM + + YPGG F+PLG KD + +++K+KE+KN
Sbjct: 154 QR--------SMEKD-----------TEKKKYPGG-AFDPLGYSKDPQKFEEYKVKEIKN 193
Query: 231 GRLAMLAILGYFVQGLV-TGVGPYQNLLDHLADPVNNNV 268
GRLA+LA +G VQ G GP +NL HLADP +NN+
Sbjct: 194 GRLALLAFVGICVQQTAYPGTGPLENLATHLADPWHNNI 232
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 96/175 (54%), Gaps = 28/175 (16%)
Query: 102 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP------ 154
EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P
Sbjct: 19 EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQ 76
Query: 155 --YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLG 212
++ ++ LMG E R P LG DP YPGG F+PLG
Sbjct: 77 SILAIWACQVILMGAVEGYRIA--GGP--------------LGEVVDPLYPGGS-FDPLG 119
Query: 213 LGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
L D + + K+KE+KNG LAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 120 LADDPDAFAELKVKEIKNGMLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 174
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 117/220 (53%), Gaps = 23/220 (10%)
Query: 66 SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125
YL+G L GDYG+DPLGL E +E K+ A E+++ R+AML A G + PE L
Sbjct: 67 EYLNGELAGDYGYDPLGLGKDEEQ---VE-KYRA-NELLHARWAMLAAAGILIPEGLQAN 121
Query: 126 GLIPQETALAWFQTGV-IPPAGTYNYWADPY----------TLFVLEMALMGFAEHRRFQ 174
G WF+TG + GT NY+A P+ + ++E+ L+G E R
Sbjct: 122 G--ADIKGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLAAVTLIEIVLLGAVEKFRVD 179
Query: 175 DWANPGSMGRQYFLG-FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRL 233
G G +G F+ + D YPGGP F+PL L D + + ++KE KNGRL
Sbjct: 180 ---GTGPAGFSPGVGKFDSDIFDGLDQLYPGGP-FDPLNLADDPEVFAELQVKETKNGRL 235
Query: 234 AMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
AM+ +L + +Q VTG GPY N H++DP N+LT L+
Sbjct: 236 AMVGVLAFAIQSYVTGEGPYANFTKHISDPFGYNLLTVLQ 275
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 106/213 (49%), Gaps = 29/213 (13%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + YLDGS PGD+GFDPL L + PE + E E+I+ R+AML G
Sbjct: 5 WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGV 58
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE LG + Q A G G W + T+ +E + F EH+R
Sbjct: 59 LVPEALGLGNWV-QAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQR---- 113
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
SM + + YPGG F+PLG KD +++K+KE+KNGRLA+L
Sbjct: 114 ----SMEKD-----------TEKKKYPGG-AFDPLGYSKDPVKFEEYKVKEIKNGRLAIL 157
Query: 237 AILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
A +G+ V Q G GP +NL HLADP +NN+
Sbjct: 158 AFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 190
>gi|413922347|gb|AFW62279.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 242
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 119/252 (47%), Gaps = 31/252 (12%)
Query: 17 TARQILGARSAQSPTGSSRKGSFVVRAASTPPVK---QGADRPLWFASKQSLSYLDGSLP 73
TAR + A S + S + R A+ P + + + W S +YLDGSLP
Sbjct: 5 TARAPVAALRPSSSSAFLGHSSRLGRTATASPTRRSLKAEAKGEWLPGLPSPAYLDGSLP 64
Query: 74 GDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQET 132
GD GFDPLGL+ DPE +W E++NGR+AMLG G + PE+L KAGLI
Sbjct: 65 GDNGFDPLGLAEDPENL------RWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLI---N 115
Query: 133 ALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK 192
A W+ AG Y+A TLFV+E L + E RR+QD NPGS+ + F+
Sbjct: 116 APQWYD------AGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKS 167
Query: 193 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252
Y + YPG +FNPL ++ K KE+ N A G Q V P
Sbjct: 168 YSLPPHECGYPGS-VFNPLNFAPTLEA----KEKELAN---AQRHRQGALRQPAAAPVRP 219
Query: 253 YQNLLDHLADPV 264
H DPV
Sbjct: 220 MAQ--HHHPDPV 229
>gi|145079374|tpg|DAA05912.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Acetabularia acetabulum]
Length = 229
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 107/215 (49%), Gaps = 43/215 (20%)
Query: 57 LWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
+W+ ++LD ++PGDYGFDPL L GT + P W E+ NGR+AM+ G
Sbjct: 44 MWYPGATPPAHLDSTMPGDYGFDPLRL----GTNTELLP-WYREAELTNGRWAMMAVAGI 98
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ + G +P+ W AG Y L +E+ALM E++RF+ W
Sbjct: 99 LFTDAFG----LPK----FWL-------AGAEKYAIGFAPLVAIEIALMAVLEYQRFKGW 143
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
G G FL F +P F+PL + DE + KE+KNGRLAM+
Sbjct: 144 KETGKSG---FLAF-----------FP----FDPLNMASDEMA-----FKEIKNGRLAMI 180
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
A LG+ Q V G+GP + L H+ADP NNN+ TS
Sbjct: 181 AFLGFCSQAAVRGMGPIECLKMHIADPWNNNIFTS 215
>gi|312281599|dbj|BAJ33665.1| unnamed protein product [Thellungiella halophila]
Length = 288
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 116/263 (44%), Gaps = 71/263 (26%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF-------------------- 92
+DRPLWF +S +LDGSL GDYGFDP GL P F
Sbjct: 50 SDRPLWFPGAKSPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGT 109
Query: 93 -----------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
+P +G E+I+GR+AML +GA++ E L T +
Sbjct: 110 RTEEAAPKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL---------TGV 160
Query: 135 AWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
W G + +Y P TL +E+ ++G+ E +R + L
Sbjct: 161 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE------------LD 208
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
EK L YPGG F+PLGL D + +L E+K+ RLAM+A LG+ VQ TG
Sbjct: 209 SEKRL-------YPGGKFFDPLGLASDPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATG 261
Query: 250 VGPYQNLLDHLADPVNNNVLTSL 272
GP N HL+DP++ ++ +
Sbjct: 262 KGPLNNWATHLSDPLHTTIIDTF 284
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 109/226 (48%), Gaps = 48/226 (21%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W SYLDGS PGD+GFDPLGL + PE F E E+I+ R+AML G
Sbjct: 4 WLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKE------SELIHARWAMLAIPGV 57
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNY------WADPYTLFVLEMALMGFAEH 170
+ PE LG + +A W T P G Y W + + +E + F E
Sbjct: 58 LIPEALGYGNWV---SAQKWAAT----PGGQATYLGNPVPWGNLPIILAVEFIAIAFVES 110
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R G DP YPGGP F+PLG K ++++ KLKE
Sbjct: 111 QR----------------------NGESDPEKRKYPGGP-FDPLGFSKG-ANLEELKLKE 146
Query: 228 VKNGRLAMLAILGYFVQGLV-TGVGPYQNLLDHLADPVNNNVLTSL 272
+KNGRLA++A LG+ VQ + G GP +NL HLADP +N + L
Sbjct: 147 IKNGRLALVAFLGFVVQAVAYPGTGPLENLKTHLADPWHNTIAHVL 192
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 132/282 (46%), Gaps = 65/282 (23%)
Query: 1 MATQALVS-SSLTSSVETARQ--ILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPL 57
MAT A S + + V TA++ S+ S G S GS V A P G RP
Sbjct: 1 MATAAAAQVSRVVTGVATAQKSSFFAGSSSVSLLGCS-NGSRVCMAEWLP----GNPRP- 54
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
SYLDGS PGD+GFDPLGL + PE F E E+I+ R+AML G
Sbjct: 55 --------SYLDGSAPGDFGFDPLGLGEVPENLERFKE------SELIHARWAMLAVPGV 100
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + +A W T P G Y +P + +E + FAE
Sbjct: 101 LIPEALGYGNWV---SAQKWAAT----PGGQATYLGNPVPWGNLPVILAIEFLAIAFAES 153
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R G DP YPGG F+PLG K ++++ KLKE
Sbjct: 154 QR----------------------NGEPDPEKRKYPGG-AFDPLGFSKG-ANLEELKLKE 189
Query: 228 VKNGRLAMLAILGYFVQGLV-TGVGPYQNLLDHLADPVNNNV 268
+KNGRLA++A LG+ VQ + G GP +NL HLADP +N +
Sbjct: 190 IKNGRLALVAFLGFAVQAIAYPGTGPLENLKTHLADPWHNTI 231
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 121/248 (48%), Gaps = 33/248 (13%)
Query: 41 VRAASTPPVKQ----GADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPK 96
RAA +Q G RP S +L G++ GD GFDPLGLS + + +
Sbjct: 164 TRAAHAEARRQSKWYGPSRPRLPGPLGSAEHLIGAIAGDAGFDPLGLSKEQASFAKYQE- 222
Query: 97 WLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV--IPPAGTYNYWADP 154
E+++ R+AMLG VG + PE+L G+ E W++ G + T N+
Sbjct: 223 ----AELLHARWAMLGVVGCLVPELLALRGVDLGEPV--WWKVGASKLNSDLTLNWGGIE 276
Query: 155 Y----------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 204
+ + LMG E+ R+ + +G FL GD YPG
Sbjct: 277 GFRIAGKQGIGLIAACQAVLMGGPEYARYVGIRSLEPVG--VFL--------PGDQNYPG 326
Query: 205 GPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPV 264
G F+PL D + +KEVKNGRLAMLA+LG+FVQ VT VGP QN+LD +ADP
Sbjct: 327 GGPFDPLNYAADADGFVEQAVKEVKNGRLAMLAMLGFFVQAAVTRVGPVQNVLDFVADPA 386
Query: 265 NNNVLTSL 272
+NN+ +L
Sbjct: 387 HNNIFWNL 394
>gi|302784975|ref|XP_002974259.1| light-harvesting complex [Selaginella moellendorffii]
gi|300157857|gb|EFJ24481.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 120/264 (45%), Gaps = 72/264 (27%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF-------------------- 92
A+RPLWF + YLDGSL GDYGFDPLGL P F
Sbjct: 62 ANRPLWFPGAKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGE 121
Query: 93 ------------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETA 133
++P +G E+I+GR+AML +GAIA E T
Sbjct: 122 RVEDLSTIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETF---------TG 172
Query: 134 LAWFQTGVIP--PAGTYNYWADPYTLFVL---EMALMGFAEHRRFQDWANPGSMGRQYFL 188
+ W G + +Y ++ P+T+ L E+ ++GF E +R + L
Sbjct: 173 VTWQDAGKVELDQGPSYFGFSLPFTITALVWIEVLVIGFIEFQRNTE------------L 220
Query: 189 GFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT 248
EK L YPGG F+PLGL D + + KL E+K+ RLAM+A G+ VQ T
Sbjct: 221 DPEKRL-------YPGGSYFDPLGLAADPERKEVLKLAEIKHARLAMVAAFGFAVQAAAT 273
Query: 249 GVGPYQNLLDHLADPVNNNVLTSL 272
G GP N + HL+DP++ ++ +
Sbjct: 274 GKGPLDNWVTHLSDPLHTTIIDTF 297
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 108/214 (50%), Gaps = 47/214 (21%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
+YLDGS PGD+GFDPLGL + P + E E+I+ R+AML G + PE LG
Sbjct: 8 AYLDGSAPGDFGFDPLGLGEVPANLERYKE------SELIHCRWAMLAVPGILVPEALGY 61
Query: 125 AGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEHRRFQDWAN 178
+ A W P G Y +P T+ +E + F EH+R
Sbjct: 62 GNWV---KAQEWAAL----PGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR------ 108
Query: 179 PGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
SM + DP YPGG F+PLG KD K +++ K+KE+KNGRLA+
Sbjct: 109 --SMEK--------------DPEKKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLAL 151
Query: 236 LAILGYFV-QGLVTGVGPYQNLLDHLADPVNNNV 268
LA +G+ V Q G GP +NL HLADP +NN+
Sbjct: 152 LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 185
>gi|303280461|ref|XP_003059523.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226459359|gb|EEH56655.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 235
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 129/263 (49%), Gaps = 45/263 (17%)
Query: 12 TSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA-SKQSLSYLDG 70
T+S+ + GARSA + + ++ + ++ +S + A R LW S + ++LDG
Sbjct: 6 TTSLTAVSAVRGARSAFAGSRAAFVAAPAMKVSSRASLTVKAQRELWIKDSTVAPAHLDG 65
Query: 71 SLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIP 129
+LPGD+GFDPLGL +DP+ K+ E++N R+AM+ G A E+LG
Sbjct: 66 TLPGDFGFDPLGLGADPQ------RLKYYQEAELMNARWAMMAVAGITATEVLG------ 113
Query: 130 QETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
AW+ G A +++ P L ++ +MG E +R + W + G G
Sbjct: 114 --IGPAWYDVG----AADFDF--PPLALLAIQFPVMGILELKRIRGWLDTGKSGVV---- 161
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
+P ++P+G+ D +KE+KNGRLAM+A +G VQ +V
Sbjct: 162 ----------DQFP----WDPMGMNSD-----GMAVKEIKNGRLAMIAFVGIVVQAIVYR 202
Query: 250 VGPYQNLLDHLADPVNNNVLTSL 272
GP L DH+ DP N+ +++
Sbjct: 203 EGPVAALKDHVTDPFGCNMASNI 225
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 124/282 (43%), Gaps = 71/282 (25%)
Query: 34 SRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF- 92
+R G ++A K +DRPLW+ ++ +LDGSL GDYGFDP GL P F
Sbjct: 30 ARFGFGTKKSAPKRSAKPTSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFE 89
Query: 93 ------------------------------IEPKWLAYG-------EVINGRYAMLGAVG 115
+P +G E+I+GR+AML +G
Sbjct: 90 LDSLDQNLAKNIAGDIIGTRTEAADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLG 149
Query: 116 AIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEH 170
A+ E L T + W G + +Y P TL +E+ ++G+ E
Sbjct: 150 ALTVEWL---------TGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEF 200
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
+R + L EK L YPGG F+PLGL +D + +L E+K+
Sbjct: 201 QRNSE------------LDPEKRL-------YPGGKFFDPLGLAEDPEKKATLQLAEIKH 241
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
RLAM+A LG+ VQ VTG GP N HL+DP++ ++ +
Sbjct: 242 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNF 283
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 127/274 (46%), Gaps = 44/274 (16%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSPTG-SSRKG-SFVVRAASTPPVKQGADRPLWFASK 62
A+ SSS S +G S +P+ S R G F A ++ V A+ WF +
Sbjct: 2 AMASSSGLRSCSA----VGVPSLLAPSSLSGRSGLPFCAYATTSGRVTMSAE---WFPGQ 54
Query: 63 QSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEI 121
++LDGS PGD+GFDPLGL+ PE F E E+ + R+AML G + PE
Sbjct: 55 PRPAHLDGSSPGDFGFDPLGLATVPENFERFKE------SEIYHCRWAMLCVPGVLVPEA 108
Query: 122 LGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGS 181
LG + + A G G W + T+ +E + FAE +R +
Sbjct: 109 LGLGNWV-KAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME------ 161
Query: 182 MGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
DP YPGG F+PLG KD ++ KLKE+KNGRLAMLA
Sbjct: 162 ----------------KDPEKKKYPGG-AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAF 204
Query: 239 LGYFV-QGLVTGVGPYQNLLDHLADPVNNNVLTS 271
+G+ V Q G GP +N HLADP +N TS
Sbjct: 205 VGFCVQQSAYPGTGPLENPGTHLADPWHNTSATS 238
>gi|255642841|gb|ACU22606.1| unknown [Glycine max]
Length = 150
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 94/164 (57%), Gaps = 16/164 (9%)
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 169
MLG G + PE+ K G+I A W+ AG Y+A TLFV+E L + E
Sbjct: 1 MLGVAGMLLPEVFTKIGII---NAPQWYD------AGKSEYFASSSTLFVIEFILFHYVE 51
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
RR+QD NPGS+ + F++Y + YPG +FNPL ++ K KE+
Sbjct: 52 IRRWQDIKNPGSVNQDPI--FKQYSLPQHECGYPGS-VFNPLNFAPTLEA----KEKELA 104
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
NGRLAMLA LG+ VQ VTG GP++NLL HL+DP +N ++ +++
Sbjct: 105 NGRLAMLAFLGFIVQHNVTGKGPFENLLQHLSDPWHNTIINTIR 148
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 142/286 (49%), Gaps = 35/286 (12%)
Query: 2 ATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFAS 61
A +A+ +S L S+++ + + ++ +S K + A + G +RP W
Sbjct: 65 AVKAIANSPLGESLQSRME----ENKKAAVKNSSKFKALAEKAKNESLWYGEERPRWLGP 120
Query: 62 --KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
+YL G LPGDYGFD GL DP + E+++ R+AML A+GA+
Sbjct: 121 IPYDYPAYLTGELPGDYGFDIAGLGKDPVAFQKYFN------FEILHARWAMLAALGALL 174
Query: 119 PEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLFVLEMALMGF 167
PE+L G W++ G G T +Y P + + + LM
Sbjct: 175 PELLDLLGAF-HFVEPVWWRVGYSKLKGDTLDYLGIPGFHFAGSQGVIVIAICQALLMVG 233
Query: 168 AEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKE 227
E+ R+ G + YL GD YPGG LF+PL L KD + ++ K+KE
Sbjct: 234 PEYARY--------CGIEALEPLGIYL--PGDINYPGGALFDPLNLSKDPVAFEELKVKE 283
Query: 228 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
+KNGRLAM+A LG+++Q TG GP QNLLDHLADP +NN+L+ K
Sbjct: 284 IKNGRLAMVAWLGFYIQAAATGKGPVQNLLDHLADPFHNNLLSIFK 329
>gi|194701622|gb|ACF84895.1| unknown [Zea mays]
Length = 149
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 92/163 (56%), Gaps = 16/163 (9%)
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 169
MLG G + PE+L KAGLI A W+ AG Y+A TLFV+E L + E
Sbjct: 1 MLGVAGMLIPEVLTKAGLI---NAPQWYD------AGKSEYFASSSTLFVIEFILFHYVE 51
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
RR+QD NPGS+ + F+ Y + YPG +FNPL ++ K KE+
Sbjct: 52 IRRWQDIKNPGSVNQDPI--FKSYSLPPHECGYPGS-VFNPLNFAPTLEA----KEKELA 104
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
NGRLAMLA L + +Q VTG GP+ NLL HL+DP +N ++ +L
Sbjct: 105 NGRLAMLAFLAFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTL 147
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 101/175 (57%), Gaps = 25/175 (14%)
Query: 102 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--- 157
EVI+ R+AMLGA+G I PE+L K G IP A+ WF+ G I G NY + +
Sbjct: 17 EVIHARWAMLGALGCITPELLAKNG-IPFGEAV-WFKAGAQIFQDGGLNYLGNESLVHAQ 74
Query: 158 -----FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLG 212
+++ LMG AE R AN G+ G GF + L D YPGG F+PLG
Sbjct: 75 SILATLAVQVLLMGAAESYR----ANGGAPG-----GFGEDL----DSLYPGGA-FDPLG 120
Query: 213 LGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
L D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP NL HL+DP NN
Sbjct: 121 LADDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPTGNN 175
>gi|307110371|gb|EFN58607.1| hypothetical protein CHLNCDRAFT_50418 [Chlorella variabilis]
Length = 212
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 101/201 (50%), Gaps = 20/201 (9%)
Query: 71 SLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQ 130
L G++GFDPL L E KW E+ NGR+AMLG G + E+L K GL +
Sbjct: 13 DLAGNFGFDPLSLGKDEAA-----LKWYTQAELQNGRWAMLGVAGILVQELLHKTGLGGK 67
Query: 131 ETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF 190
+ WF AG +WA TL + L +AE R QD+ PGS F
Sbjct: 68 AADVYWFD------AGNNTFWAPKETLIAISFLLFAWAECNRAQDYFKPGSNVSDPFGNS 121
Query: 191 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
KY+ + YPG F+PL K++ + +KLKE+KNGRLAMLA LG+ Q
Sbjct: 122 IKYV----ELGYPG---FDPLSFTKNDYA--GWKLKEIKNGRLAMLAFLGFVAQHNAQPG 172
Query: 251 GPYQNLLDHLADPVNNNVLTS 271
P L DHL++P N+ + +
Sbjct: 173 SPLDQLADHLSNPWKNHFVNN 193
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 113/263 (42%), Gaps = 71/263 (26%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF-------------------- 92
DRPLWF +S +LDGSL GDYGFDP GL P F
Sbjct: 110 TDRPLWFPGAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGT 169
Query: 93 -----------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
+P +G E+I+GR+AML +GA+ E L T +
Sbjct: 170 RTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL---------TGV 220
Query: 135 AWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
W G + Y P TL +E+ ++G+ E +R + L
Sbjct: 221 TWQDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE------------LD 268
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
EK L YPGG F+PLGL D + +L E+K+ RLAM+A LG+ VQ TG
Sbjct: 269 SEKRL-------YPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATG 321
Query: 250 VGPYQNLLDHLADPVNNNVLTSL 272
GP N HL+DP++ ++ +
Sbjct: 322 KGPLNNWATHLSDPLHTTIIDTF 344
>gi|162458005|ref|NP_001105502.1| photosystem II subunit29 [Zea mays]
gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
gi|195639374|gb|ACG39155.1| hypothetical protein [Zea mays]
gi|414887094|tpg|DAA63108.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 1 [Zea
mays]
gi|414887095|tpg|DAA63109.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 2 [Zea
mays]
Length = 291
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 117/263 (44%), Gaps = 71/263 (26%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP-----------------EGTGGFI-- 93
+DRPLWF + YLDGSL GDYGFDP GL P GG I
Sbjct: 53 SDRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQNLAKNEAGGIIGT 112
Query: 94 ------------EPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
+P +G E+I+GR+AML +GA++ E L T +
Sbjct: 113 RFESSEVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWL---------TGV 163
Query: 135 AWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
W G + +Y P TL +E+ ++G+ E +R + L
Sbjct: 164 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE------------LD 211
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
EK L YPGG F+PLGL D + + +L E+K+ RLAM+A LG+ VQ TG
Sbjct: 212 PEKRL-------YPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATG 264
Query: 250 VGPYQNLLDHLADPVNNNVLTSL 272
GP N HL+DP++ + +
Sbjct: 265 KGPLNNWATHLSDPLHTTIFDTF 287
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 120/232 (51%), Gaps = 37/232 (15%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + S+ G+DR L+ S + SYL G PGDYG+D GLS DPE
Sbjct: 35 RKTAVKAKQVSSGSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET--- 91
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 92 FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDY 146
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ ++ LMG E R P LG DP Y
Sbjct: 147 LGNPNLVHAQSILAIWACQVVLMGAVEGYRIA--GGP--------------LGEIVDPLY 190
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQ 254
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG P +
Sbjct: 191 PGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGGEPCR 241
>gi|449460307|ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
gi|449516143|ref|XP_004165107.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
Length = 284
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 120/263 (45%), Gaps = 71/263 (26%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP----------------EGTGGFI--- 93
+DRPLWF ++ +LDGSL GDYGFDP GL P + G I
Sbjct: 48 SDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGT 107
Query: 94 ------------EPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
+P +G E+I+GR+AML +GA++ E L T +
Sbjct: 108 RFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL---------TGV 158
Query: 135 AWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
W G + +Y P TL +E+ ++G+ E +R + L
Sbjct: 159 TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE------------LD 206
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
EK L YPGG F+PLGL +D + +L E+K+ RLAM+A LG+ VQ VTG
Sbjct: 207 PEKRL-------YPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTG 259
Query: 250 VGPYQNLLDHLADPVNNNVLTSL 272
GP N HL+DP++ ++ +
Sbjct: 260 KGPLNNWATHLSDPLHTTIIDNF 282
>gi|307110650|gb|EFN58886.1| hypothetical protein CHLNCDRAFT_29899 [Chlorella variabilis]
Length = 266
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 129/253 (50%), Gaps = 28/253 (11%)
Query: 20 QILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGS-LPGDYGF 78
Q L A++A + T K + RAA + V + A R W ++L+ S LPG++GF
Sbjct: 2 QALSAKTAVAGTRVVAKAAGPARAARSGVVVRAAARANWLPGNDFPAHLENSPLPGNFGF 61
Query: 79 DPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWF 137
DPLGL ++PE W A E ++ R+AMLG G + E++ + W+
Sbjct: 62 DPLGLGANPERLA------WFAESERVHCRWAMLGVAGILVQELV--------RPDVFWY 107
Query: 138 QTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGS 197
+ V D L E+ +M + E RR D NPGSM + F + S
Sbjct: 108 TSAV-----DVELPFDITGLVAFELFVMHWVESRRGYDIKNPGSMDQDPI--FSNFKLPS 160
Query: 198 GDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLL 257
+P YPGG +F P G SM++ K+KE+KNGRLAMLA +G+ + ++G+ P L
Sbjct: 161 HEPGYPGG-IFAPFVPG----SMEELKVKEIKNGRLAMLAFIGFTMAAQISGLNPLAALG 215
Query: 258 DHLADPVNNNVLT 270
+HL+DP+N + +
Sbjct: 216 EHLSDPLNTTIFS 228
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 113/263 (42%), Gaps = 71/263 (26%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF-------------------- 92
DRPLWF +S +LDGSL GDYGFDP GL P F
Sbjct: 52 TDRPLWFPGAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGT 111
Query: 93 -----------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
+P +G E+I+GR+AML +GA+ E L T +
Sbjct: 112 RTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL---------TGV 162
Query: 135 AWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
W G + Y P TL +E+ ++G+ E +R + L
Sbjct: 163 TWQDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE------------LD 210
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
EK L YPGG F+PLGL D + +L E+K+ RLAM+A LG+ VQ TG
Sbjct: 211 SEKRL-------YPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATG 263
Query: 250 VGPYQNLLDHLADPVNNNVLTSL 272
GP N HL+DP++ ++ +
Sbjct: 264 KGPLNNWATHLSDPLHTTIIDTF 286
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 120/230 (52%), Gaps = 37/230 (16%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGG 91
RK + + AS+ G DR + S + SYL G PGDYG+D GLS DPE
Sbjct: 8 RKSATTKKVASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET--- 64
Query: 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNY 150
F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y
Sbjct: 65 FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDY 119
Query: 151 WADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAY 202
+P ++ +++ LMG E R P LG DP Y
Sbjct: 120 LGNPSLVHAQSILAIWAVQVILMGAVEGYRIA--GGP--------------LGEVVDPLY 163
Query: 203 PGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252
PGG F+PLGL D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP
Sbjct: 164 PGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 212
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 109/226 (48%), Gaps = 48/226 (21%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W SYLDGS PGD+GFDPLGL + PE F E E+I+ R+AML G
Sbjct: 4 WLPGNPRPSYLDGSAPGDFGFDPLGLGEVPENLERFKE------SELIHARWAMLAVPGV 57
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + +A W T P G Y +P + +E + FAE
Sbjct: 58 LIPEALGYGNWV---SAQKWAAT----PGGQATYLGNPVPWGTLPVILAVEFIAIAFAES 110
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R G DP YPGG F+P+G K ++++ KLKE
Sbjct: 111 QR----------------------NGESDPEKRKYPGG-AFDPMGFSKG-ANLEELKLKE 146
Query: 228 VKNGRLAMLAILGYFVQGLV-TGVGPYQNLLDHLADPVNNNVLTSL 272
+KNGRLA++A LG+ +Q + G GP +NL HLADP +N + L
Sbjct: 147 IKNGRLALVAFLGFAIQAIAYPGTGPLENLKTHLADPWHNTIANIL 192
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 111/228 (48%), Gaps = 50/228 (21%)
Query: 52 GADRPLW---FASKQSL-SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVING 106
G +RPLW F S + + YL G PGDYG D L PE L E++NG
Sbjct: 15 GPNRPLWKGPFTSPKDVPEYLKGEYPGDYGCDIFKLVRLPENYAK------LRSQELMNG 68
Query: 107 RYAMLGAVGAIAPEILGK---AGLIPQETALAWFQTG--VIPPAGTYNYWADP------- 154
R+AMLG G + PE++ G P WF+TG + AG +Y P
Sbjct: 69 RWAMLGITGCLVPELINSNPTPGFEP-----VWFKTGAQIFSEAGI-DYLGVPGFINAHS 122
Query: 155 -YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPA-YPGGPLFNPLG 212
+ V++ LMG AE+ R + L G+ A YPGG F+PLG
Sbjct: 123 LVAVIVVQALLMGVAEYARIK-------------------LSPEGNDAFYPGGKAFDPLG 163
Query: 213 LGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHL 260
D +S + K+KE+KNGRLAM+A+ G F QG VTGV P QNL D L
Sbjct: 164 FSSDPESFAELKVKEIKNGRLAMMAMAGLFAQGAVTGVSPLQNLHDFL 211
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 115/226 (50%), Gaps = 32/226 (14%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DR LW + YL G L GDYG+DPLGL +DP KW E+ + R+AMLG
Sbjct: 31 DRKLWAPGVVAPEYLKGDLAGDYGWDPLGLGADPTAL------KWYRQSELQHARWAMLG 84
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYT------LFVLEMALMG 166
G + EI+ + + +++ AG +P+T L E LM
Sbjct: 85 VAGVLVQEIV--------KPDVYFYE------AGLPQNLPEPFTNINMGGLLAWEFILMH 130
Query: 167 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
+ E RR+QD+ N GS+ K + + YPGG +F+P G K ++K+ + K
Sbjct: 131 WVEVRRWQDYKNFGSVNEDPIFKGNKV--PNPEMGYPGG-IFDPFGFSKG--NLKELQTK 185
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
E+KNGRLAM+A + + +Q TG GP L HL++P NN+L ++
Sbjct: 186 EIKNGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNI 231
>gi|116792703|gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 125/278 (44%), Gaps = 68/278 (24%)
Query: 5 ALVSSSLTSSVETARQILGARSAQSP---TGSSRKGSFVVRAASTPPVKQGADRPLWFA- 60
A L+S Q+LG T G V A+S P G DR L+
Sbjct: 15 AFTGGQLSSVKPQNNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPW-YGPDRVLYLGP 73
Query: 61 -SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIA 118
S + SYL G PGDYG+D GLS DPE F + + L EVI+GR+AMLGA+G +
Sbjct: 74 FSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHGRWAMLGALGCVF 127
Query: 119 PEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAE 169
PE+L + G+ E WF+ G I G +Y P + ++ LMG E
Sbjct: 128 PELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIE 185
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
R GGPL ++KE+K
Sbjct: 186 GYRVA-----------------------------GGPLG---------------EVKELK 201
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
NGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 202 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 239
>gi|224090986|ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
Length = 285
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 115/262 (43%), Gaps = 71/262 (27%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF--------------------- 92
DRPLW+ ++ YLDGSL GDYGFDP GL P F
Sbjct: 50 DRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDIIGTR 109
Query: 93 ----------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETALA 135
+P +G E+I+GR+AML +GA++ E L T +
Sbjct: 110 TEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWL---------TGVT 160
Query: 136 WFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF 190
W G + +Y P L +E ++G+ E +R + L
Sbjct: 161 WQDAGKVELVEGSSYLGQPLPFSITALIWIEAVIIGYIEFQRNAE------------LDP 208
Query: 191 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
EK L YPGG F+PLGL D + +L E+K+ RLAM+A LG+ VQ VTG
Sbjct: 209 EKRL-------YPGGQFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGK 261
Query: 251 GPYQNLLDHLADPVNNNVLTSL 272
GP N HL+DP++ ++ +L
Sbjct: 262 GPLNNWATHLSDPLHTTIIDNL 283
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 136/296 (45%), Gaps = 43/296 (14%)
Query: 1 MATQALVSSSLTSSVETARQILGARSA---QSPTGSSRK----GSFVVRAASTPPVKQGA 53
+ AL S + +T ++ A+ A + PT + + V +AA + A
Sbjct: 3 VTVNALFKKSAPAPAKTVKKTAPAKKAVPAKKPTPAKKAPVTVKKTVKKAAPVKTTVKTA 62
Query: 54 DRPLWFASKQSL-------------SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAY 100
D W+ ++ L SYLDG L GDYGFDPLGL G G I K
Sbjct: 63 DLSKWYGPQRKLYLPSGLLTTADIPSYLDGKLAGDYGFDPLGL----GADGAI--KQYRV 116
Query: 101 GEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQ--TGVIPPAGTYNYWADPYTLF 158
EVI+ R+AML G + PE L AG +ET + + TG PA + A
Sbjct: 117 AEVIHARWAMLAVPGIVIPEALNIAGGDWRETGKVFLEGSTGRFGPAELWLGIA-----V 171
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSG----DPAYPGGPLFNPLGLG 214
+ LMG AE R + P F+ F+ G DP PGGPL + +
Sbjct: 172 APLIVLMGGAEKFRSDPASAPSG-----FVPFKGSFTGKDFAKLDPINPGGPL-DFYNVA 225
Query: 215 KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
+ ++ K+KE+KNGRLAM+A+LG FVQG TG GP N H+ADP N +T
Sbjct: 226 ATPQDLEILKVKEIKNGRLAMIAMLGVFVQGATTGEGPAANWGKHVADPFGYNFVT 281
>gi|302837618|ref|XP_002950368.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902598|gb|AAD55569.1|AF110787_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300264373|gb|EFJ48569.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 214
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 109/220 (49%), Gaps = 42/220 (19%)
Query: 49 VKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRY 108
V RP W ++L GSL GD GFDPLGL EG KW A E NGR+
Sbjct: 22 VCAATARPTWLPGLSPPAHLKGSLAGDSGFDPLGLGQDEG-----RLKWYAEAEKTNGRW 76
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFA 168
AM+ G + E+LG + P +W++ G A Y+ + P T +E +MGF
Sbjct: 77 AMMAVTGILGQELLG---VTP-----SWYEAG----AKEYDIPSTPLT--AIEFIVMGFL 122
Query: 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEV 228
E +R+Q + G+ G F+ ++P F+P GL + SM KEV
Sbjct: 123 EIKRYQGFKTTGTSG---FIN-----------SFP----FDPAGL--NSASMAT---KEV 159
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
KNGRLAM+A +G+ VQ LVT P + L HL+DP N+
Sbjct: 160 KNGRLAMVAFVGFAVQALVTRTQPIEGLTKHLSDPFGKNI 199
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 120/258 (46%), Gaps = 47/258 (18%)
Query: 40 VVRAASTPPVKQ-------GADRPLWFASKQSL--------------SYLDGSLPGDYGF 78
VVR A+ PV++ G D W+ + L SYLDGSL GDYGF
Sbjct: 61 VVRKAA--PVRKSSGKRGDGVDLSKWYGPNRRLYLPAGLLDINTDVPSYLDGSLAGDYGF 118
Query: 79 DPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQ 138
DPL L G G +E A EVI+ R+AML G + PE LG G + ET +
Sbjct: 119 DPLQL----GKDGKVEQYRAA--EVIHARWAMLAIPGIVIPEALGIPGGVWTETGKVFLD 172
Query: 139 TGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSG 198
AG +PY +++ L E R P F+ F+ GS
Sbjct: 173 G----EAGRPEILQNPYLFAAIQIGLFAAVEGYRAGKAPAPDG-----FVPFKGKFSGSD 223
Query: 199 ----DPAYPGGPL--FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252
DP PGGPL FN + + K+KE+KNGRLAM+A+LG FVQGL TG GP
Sbjct: 224 FSGLDPINPGGPLDFFN---VAATPDDLAVLKVKEIKNGRLAMIAMLGVFVQGLTTGEGP 280
Query: 253 YQNLLDHLADPVNNNVLT 270
N H+ADP N +T
Sbjct: 281 AANWGKHVADPFGYNFVT 298
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 130/249 (52%), Gaps = 39/249 (15%)
Query: 14 SVETARQILGARSAQSPTGSSRKGSFVVRAASTP-PVKQGADRPLWFA--SKQSLSYLDG 70
SV +A+ +G+++ + +S + + + +S P V G +RP + S SYL G
Sbjct: 2 SVISAKTFIGSQAVTTKKVTSMRRT--QKKSSAPDSVWYGPERPQFLGPFSGDCPSYLTG 59
Query: 71 SLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIP 129
PGDYG+D GLS DPE + E E+I+ R+AMLGA+G + PEIL K G +
Sbjct: 60 EFPGDYGWDTAGLSADPETFRRYREQ------ELIHARWAMLGALGCVTPEILAKYGGVS 113
Query: 130 QETALAWFQTGV-IPPAGTYNYWADP------YTLFVL--EMALMGFAEHRRFQDWANPG 180
++ WF+ G I G +Y + Y L +L ++ LMG E R N G
Sbjct: 114 FGESV-WFKAGSQIFQEGGLDYLGNSSLVHAQYILAILGCQVLLMGAIEAYR----VNGG 168
Query: 181 SMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILG 240
+G DP YPGG F+PLGL D + + K+KE+KNGRLAM ++ G
Sbjct: 169 PLGEGL------------DPLYPGGQ-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 215
Query: 241 YFVQGLVTG 249
++VQ LVTG
Sbjct: 216 FYVQALVTG 224
>gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|34394009|dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|113611511|dbj|BAF21889.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|125558786|gb|EAZ04322.1| hypothetical protein OsI_26463 [Oryza sativa Indica Group]
gi|215704418|dbj|BAG93852.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737393|dbj|BAG96322.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737709|dbj|BAG96839.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764955|dbj|BAG86652.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767447|dbj|BAG99675.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 290
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 116/268 (43%), Gaps = 71/268 (26%)
Query: 48 PVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP-----------------EGTG 90
P DRPLWF + YLDGSL GDYGFDP GL P G
Sbjct: 47 PSAPTTDRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAG 106
Query: 91 GFI--------------EPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIP 129
I +P +G E+I+GR+AML +GA++ E L
Sbjct: 107 EIIGTRFETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL------- 159
Query: 130 QETALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGR 184
T + W G + +Y P TL +E+ ++G+ E +R +
Sbjct: 160 --TGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE--------- 208
Query: 185 QYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 244
L EK L YPGG F+PLGL D + + +L E+K+ RLAM+A LG+ VQ
Sbjct: 209 ---LDPEKRL-------YPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVAFLGFAVQ 258
Query: 245 GLVTGVGPYQNLLDHLADPVNNNVLTSL 272
TG GP N HL+DP++ + +
Sbjct: 259 AAATGKGPLNNWATHLSDPLHTTIFDTF 286
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 110/216 (50%), Gaps = 32/216 (14%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SY G PGDYG+D GLS DPE K +A EVI GR+AMLGA G I P
Sbjct: 60 SVQTPSYPTGEFPGDYGWDTAGLSADPEKAFA----KNIAL-EVIYGRWAMLGAFGCITP 114
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEH 170
E+L K + + + WF+ G I G +Y +P + ++ LMG E
Sbjct: 115 EVLQKWVRVDFKEPV-WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEG 173
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
R + G G+ YPGG F+ L L D+ + + K+KE+KN
Sbjct: 174 FRINRFDGVGE----------------GNDLYPGGKYFDLLSLVDDQVTFVELKVKEIKN 217
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNN 266
G LAM ++ G+FVQ +VTG P ++LLDHL + V N
Sbjct: 218 GMLAMFSMFGFFVQAIVTGKDPLESLLDHLDNFVAN 253
>gi|441477201|dbj|BAM75360.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477203|dbj|BAM75361.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477205|dbj|BAM75362.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477207|dbj|BAM75363.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477209|dbj|BAM75364.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477211|dbj|BAM75365.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477213|dbj|BAM75366.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477215|dbj|BAM75367.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477217|dbj|BAM75368.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477219|dbj|BAM75369.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477221|dbj|BAM75370.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
gi|441477223|dbj|BAM75371.1| light-harvesting complex I chlorophyll a/b binding protein 3,
partial [Phyllodoce nipponica]
Length = 61
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/61 (86%), Positives = 56/61 (91%)
Query: 106 GRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALM 165
GR+AMLGAVG IAPEILGK GLIP ETAL WF+TGVIPPAGTY YWADP+TLFVLEMALM
Sbjct: 1 GRFAMLGAVGCIAPEILGKLGLIPPETALPWFKTGVIPPAGTYTYWADPFTLFVLEMALM 60
Query: 166 G 166
G
Sbjct: 61 G 61
>gi|160713961|gb|ABX47016.1| chloroplast chlorophyll a/b binding protein cab-PhE7 [Phyllostachys
edulis]
Length = 287
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 114/263 (43%), Gaps = 71/263 (26%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP---------------------EGTGG 91
+DRPLWF + YLDGSL GDYGFDP GL P + G
Sbjct: 49 SDRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNDAGDIIGT 108
Query: 92 FIEP-----------------KWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
EP + E+I+GR+AML +GA++ E L T +
Sbjct: 109 RFEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL---------TGV 159
Query: 135 AWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
W G + +Y P TL +E+ L+G+ E +R + L
Sbjct: 160 TWQDAGKVELVDGSSYLGQPLPFSMTTLIWIEVLLIGYIEFQRNAE------------LD 207
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
EK L YPGG F+PLGL D + + +L E+K+ RLAM+ LG+ VQ TG
Sbjct: 208 SEKRL-------YPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATG 260
Query: 250 VGPYQNLLDHLADPVNNNVLTSL 272
GP N HL+DP++ + +
Sbjct: 261 KGPLNNWATHLSDPLHTTIFDTF 283
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 115/263 (43%), Gaps = 71/263 (26%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP---------------------EGTGG 91
+DRPLWF + YLDGSL GDYGFDP+GL P + G
Sbjct: 49 SDRPLWFPGAVAPEYLDGSLVGDYGFDPIGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGT 108
Query: 92 FIEP-----------------KWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
EP + E+I+GR+AML +GA++ E L T +
Sbjct: 109 RFEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWL---------TGV 159
Query: 135 AWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
W G + +Y P TL +E+ L+G+ E +R + L
Sbjct: 160 TWQDAGKVELENGSSYLGQPLPFSMTTLIWIEVLLIGYIEFQRNAE------------LD 207
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
EK L YPGG F+PLGL D + + +L E+K+ RLAM+ LG+ VQ TG
Sbjct: 208 PEKRL-------YPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATG 260
Query: 250 VGPYQNLLDHLADPVNNNVLTSL 272
GP N HL+DP++ + +
Sbjct: 261 KGPLNNWATHLSDPLHTTIFDTF 283
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 32/223 (14%)
Query: 57 LWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
LW + YL G L GDYG+DPLGL +DP + +W E+++ R+AMLG G
Sbjct: 34 LWAPGVVAPDYLKGELAGDYGWDPLGLGADP------VALRWYRQSELVHARWAMLGVAG 87
Query: 116 AIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYT------LFVLEMALMGFAE 169
+ E++ + + +++ AG +P+T L E LM + E
Sbjct: 88 VLVQEVV--------KPDVYFYE------AGLPQNLPEPFTNVNMGGLLAWEFILMHWVE 133
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVK 229
RR+QD+ N GS+ K + + YPGG +F+PLG K ++K+ + KE+K
Sbjct: 134 VRRWQDYKNFGSVNEDPIFKGNKV--PNPEMGYPGG-IFDPLGFSKG--NLKELQTKEIK 188
Query: 230 NGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
NGRLAM+A +G+ +Q TG GP L HL++P NN+L ++
Sbjct: 189 NGRLAMVAYMGFVLQAQATGKGPLAALSAHLSNPFGNNILKNI 231
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 115/226 (50%), Gaps = 32/226 (14%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
DR LW + YL G L GDYG+DPLGL +DP KW E+ + R+AMLG
Sbjct: 19 DRKLWAPGVVAPEYLKGELAGDYGWDPLGLGADPTAL------KWYRQSELQHARWAMLG 72
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYT------LFVLEMALMG 166
G + EI+ + + +++ G+ P +P+T L E LM
Sbjct: 73 VAGVLVQEIV--------KPDVYFYEAGL--PQNL----PEPFTNINMGGLLAWEFILMH 118
Query: 167 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
+ E RR+QD+ N GS+ K + + YPGG +F+P G K + K+ + K
Sbjct: 119 WVEVRRWQDYKNFGSVNEDPIFKGNKV--PNPEMGYPGG-IFDPFGFSKGD--FKELQTK 173
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
E+KNGRLAM+A + + +Q TG GP L HL++P NN+L ++
Sbjct: 174 EIKNGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNI 219
>gi|194689644|gb|ACF78906.1| unknown [Zea mays]
Length = 156
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 169
MLGA G PE L K G++ W+ AG Y+ D TLF++E+ L+G+AE
Sbjct: 1 MLGAAGIFIPEFLTKIGVL---NTPFWYT------AGEQQYFTDTTTLFIIELILIGWAE 51
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 228
RR+ D PGS+ K G D YPGG F+PLG G + +K+ + KE+
Sbjct: 52 GRRWADIIKPGSVNTDPIFPSNKLTGT--DVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 109
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
KNGRLAMLA++G + Q TG GP NL HLADP + + +
Sbjct: 110 KNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF 153
>gi|219362417|ref|NP_001136606.1| uncharacterized protein LOC100216729 [Zea mays]
gi|194696340|gb|ACF82254.1| unknown [Zea mays]
Length = 291
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 115/263 (43%), Gaps = 71/263 (26%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP-----------------EGTGGFI-- 93
+DRPLWF + YLDGSL GDYGFDP GL P GG I
Sbjct: 53 SDRPLWFPGAVAPDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQNLAKNEAGGIIGT 112
Query: 94 ------------EPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
+P +G E+I+GR+AML +GA+ E L T +
Sbjct: 113 RFESSDVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL---------TGV 163
Query: 135 AWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
W G + +Y P TL +E+ ++G+ E +R + L
Sbjct: 164 TWQDAGKVELVDGSSYLGQPLPFTISTLIWIEVLVIGYIEFQRNAE------------LD 211
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
EK L YPGG F+PL L D + + +L E+K+ RLAM+A LG+ VQ TG
Sbjct: 212 PEKRL-------YPGGSYFDPLALAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATG 264
Query: 250 VGPYQNLLDHLADPVNNNVLTSL 272
GP N HL+DP++ + +
Sbjct: 265 KGPLNNWATHLSDPLHTTIFDTF 287
>gi|242050544|ref|XP_002463016.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
gi|241926393|gb|EER99537.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
Length = 288
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 117/266 (43%), Gaps = 71/266 (26%)
Query: 50 KQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF----------------- 92
K +DRPLWF + YLDG+L GDYGFDP GL P F
Sbjct: 47 KISSDRPLWFPGAVAPDYLDGTLVGDYGFDPFGLGKPVEYLQFDLDSLDQNLAKNEPGVV 106
Query: 93 --------------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQE 131
++P +G E+I+GR+AML +GA++ E L
Sbjct: 107 IGTRFESSDVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWL--------- 157
Query: 132 TALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQY 186
T + W G + +Y P TL +E+ ++G+ E +R +
Sbjct: 158 TGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE----------- 206
Query: 187 FLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 246
L EK L YPGG F+PLGL D + + +L E+K+ RLAM+A LG+ VQ
Sbjct: 207 -LDPEKRL-------YPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVAFLGFAVQAA 258
Query: 247 VTGVGPYQNLLDHLADPVNNNVLTSL 272
TG GP N HL+DP++ + +
Sbjct: 259 ATGKGPLNNWATHLSDPLHTTIFDTF 284
>gi|15241005|ref|NP_195773.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
gi|38502901|sp|Q07473.1|CB4A_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.1,
chloroplastic; AltName: Full=LHCB4.1; AltName:
Full=LHCII protein 4.1; Flags: Precursor
gi|298036|emb|CAA50712.1| CP29 [Arabidopsis thaliana]
gi|7327812|emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16323075|gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
gi|110741014|dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
gi|332002974|gb|AED90357.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
Length = 290
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 114/262 (43%), Gaps = 71/262 (27%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF--------------------- 92
DRPLW+ S +LDGSL GDYGFDP GL P F
Sbjct: 54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113
Query: 93 ----------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETALA 135
+P +G E+I+GR+AML +GA++ E L T +
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL---------TGVT 164
Query: 136 WFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF 190
W G + +Y P TL +E+ ++G+ E +R + L
Sbjct: 165 WQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE------------LDS 212
Query: 191 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
EK L YPGG F+PLGL D + +L E+K+ RLAM+A LG+ VQ TG
Sbjct: 213 EKRL-------YPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGK 265
Query: 251 GPYQNLLDHLADPVNNNVLTSL 272
GP N HL+DP++ ++ +
Sbjct: 266 GPLNNWATHLSDPLHTTIIDTF 287
>gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 132/301 (43%), Gaps = 77/301 (25%)
Query: 21 ILGARSAQSPTGS----SRKGSFVVRAASTPPVKQG--ADRPLWFASKQSLSYLDGSLPG 74
+G R + +GS +R G + A+ V +G DRPLW+ ++ +LDGSL G
Sbjct: 14 FMGTRLLDAHSGSGRIQARFGFGSKKKAAPKKVSKGPSTDRPLWYPGAKAPEWLDGSLVG 73
Query: 75 DYGFDPLGLSDP----------------EGTGGFI---------------EPKWLAYG-- 101
DYGFDP GL P + G I +P +G
Sbjct: 74 DYGFDPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIGTRTEVADVKSTPFQPYSEVFGLQ 133
Query: 102 -----EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY- 155
E+I+GR+AML +GA++ E L T + W G + +Y P
Sbjct: 134 RFRECELIHGRWAMLATLGALSVEWL---------TGVTWQDAGKVELVEGSSYLGQPLP 184
Query: 156 ----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL 211
TL +E+ ++G+ E +R + L EK L YPGG F+PL
Sbjct: 185 FSITTLIWIEVLVIGYIEFQRNAE------------LDPEKRL-------YPGGSYFDPL 225
Query: 212 GLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
GL D + +L E+K+ RLAM+ LG+ VQ TG GP N HL+DP++ ++ +
Sbjct: 226 GLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDT 285
Query: 272 L 272
Sbjct: 286 F 286
>gi|226358411|gb|ACO51068.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 285
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 117/265 (44%), Gaps = 71/265 (26%)
Query: 51 QGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP----------------EGTGGFI- 93
Q +DRPLW+ + +LDGSL GDYGFDP GL P + G I
Sbjct: 47 QTSDRPLWYPGAVAPDWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNMAGEII 106
Query: 94 --------------EPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQET 132
+P +G E+I+GR+AML +GA+ E L T
Sbjct: 107 GTRTEVADVKATPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL---------T 157
Query: 133 ALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYF 187
+ W G + +Y P TL +E+ ++GF E +R +
Sbjct: 158 GVTWQDAGKVELVEGSSYLGQPLPFSMTTLIWIEVLVIGFIEFQRNAE------------ 205
Query: 188 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
L EK L YPGG F+PLGL D + +L E+K+ RLAM+A LG+ VQ
Sbjct: 206 LDPEKRL-------YPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAA 258
Query: 248 TGVGPYQNLLDHLADPVNNNVLTSL 272
TG GP N HL+DP++ ++ +
Sbjct: 259 TGKGPLNNWATHLSDPLHTTIIDTF 283
>gi|297810243|ref|XP_002873005.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
gi|297318842|gb|EFH49264.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 114/262 (43%), Gaps = 71/262 (27%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF--------------------- 92
DRPLW+ S +LDGSL GDYGFDP GL P F
Sbjct: 55 DRPLWYPGAISPEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 114
Query: 93 ----------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETALA 135
+P +G E+I+GR+AML +GA++ E L T +
Sbjct: 115 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL---------TGVT 165
Query: 136 WFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF 190
W G + +Y P TL +E+ ++G+ E +R + L
Sbjct: 166 WQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVVGYIEFQRNAE------------LDS 213
Query: 191 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
EK L YPGG F+PLGL D + +L E+K+ RLAM+A LG+ VQ TG
Sbjct: 214 EKRL-------YPGGKYFDPLGLAADPEKRAQLQLAEIKHARLAMVAFLGFAVQAAATGK 266
Query: 251 GPYQNLLDHLADPVNNNVLTSL 272
GP N HL+DP++ ++ +
Sbjct: 267 GPLNNWATHLSDPLHTTIIDTF 288
>gi|255638199|gb|ACU19413.1| unknown [Glycine max]
Length = 156
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAE 169
MLGA G PE L K G++ +W+ AG Y+ D TLF++E+ +G+AE
Sbjct: 1 MLGAAGIFIPEFLTKIGVLNTP---SWYS------AGELEYFTDTTTLFIVELFFIGWAE 51
Query: 170 HRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK-DEKSMKDFKLKEV 228
RR+ D PG + K G D YPGG F+PLG G + +KD + KE+
Sbjct: 52 GRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGTGSPQKIKDLRTKEI 109
Query: 229 KNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
KNGRLAMLA++G + Q + T GP NL HLADP + + +
Sbjct: 110 KNGRLAMLAVMGAWFQHIYTATGPIDNLFAHLADPGHATIFAAF 153
>gi|412988961|emb|CCO15552.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 108/235 (45%), Gaps = 52/235 (22%)
Query: 49 VKQGADRPLWFASKQSL----------SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKW 97
V+ A+R LW+ S+ YLDG++ GDYGFDPLGL SDPE K+
Sbjct: 30 VQVFAERKLWYEFSFSIFFLLPNIKTPDYLDGTIAGDYGFDPLGLGSDPE------RLKY 83
Query: 98 LAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTL 157
E++N R+AM+ G E LG W+ AG +Y
Sbjct: 84 YQEAELMNARWAMMAVAGICTTEALGIQS--------KWYM------AGQEDYGFPINAQ 129
Query: 158 FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDE 217
+ MGF E +R W G G + +P F+PLG+G D
Sbjct: 130 LAVLFPTMGFLETKRITGWLATGKSGI--------------NETFP----FDPLGMGADS 171
Query: 218 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
SMK LKE+KNGR AM+A +G VQ LV GP L DH+A+P NN+ T++
Sbjct: 172 DSMK---LKEIKNGRAAMIAFVGICVQALVLREGPLAALQDHVANPFGNNLATNV 223
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 117/275 (42%), Gaps = 61/275 (22%)
Query: 4 QALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQ 63
AL ++++ R G R A G V++A + P G+D P W
Sbjct: 1 MALSMRTVSAKTAAPRGFAGRRVAAVSNGCR----VVMKAGNWLP---GSDAPAW----- 48
Query: 64 SLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIL 122
L LPG+YGFDPL L DP F E EVI+GR+AMLG GA+A E+L
Sbjct: 49 ----LPDDLPGNYGFDPLSLGKDPASLKRFTE------SEVIHGRWAMLGVAGALAVELL 98
Query: 123 GKAGLIPQETALAWFQTGVIPPAGTYNYWA------DPYTLFVLEMALMGFAEHRRFQDW 176
G W+ + G W D TL E M AE +R
Sbjct: 99 GYGN---------WYDAPLWAVTGGKATWFGIEVPFDLNTLLAFEFVAMAAAEGQRND-- 147
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
+G YPGG F+PLG KD + KLKE+KNGRLAM+
Sbjct: 148 --------------------AGGVIYPGGA-FDPLGFAKDSSKAGELKLKEIKNGRLAMV 186
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
A LG+ Q TG GP L +HLA+P N T+
Sbjct: 187 AFLGFIAQHAATGKGPLAALGEHLANPWGANFATN 221
>gi|110377766|gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
Length = 285
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 115/268 (42%), Gaps = 70/268 (26%)
Query: 50 KQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF----------------- 92
+Q DRPLW+ ++ YLDGSL GDYGFDP GL P F
Sbjct: 43 RQIPDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDV 102
Query: 93 --------------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQE 131
+P +G E+I+GR+AML +GA+ E L
Sbjct: 103 IGTRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL--------- 153
Query: 132 TALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQY 186
T + W G + +Y P TL +E+ ++G+ FQ R
Sbjct: 154 TGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYI--VEFQ---------RNA 202
Query: 187 FLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 246
L EK L YPGG F+PLGL D + +L E+K+ RLAM+A LG+ VQ
Sbjct: 203 ELDPEKRL-------YPGGSFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAA 255
Query: 247 VTGVGPYQNLLDHLADPVNNNVLTSLKF 274
TG GP N HL+DP++ + + F
Sbjct: 256 ATGKGPLNNWATHLSDPLHTTIFDTFGF 283
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 114/262 (43%), Gaps = 71/262 (27%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF--------------------- 92
DRP+W+ S +LDGSL GDYGFDP GL P F
Sbjct: 54 DRPVWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113
Query: 93 ----------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETALA 135
+P +G E+I+GR+AML +GA++ E L T +
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL---------TGVT 164
Query: 136 WFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF 190
W G + +Y P TL +E+ ++G+ E +R + L
Sbjct: 165 WQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE------------LDS 212
Query: 191 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
EK L YPGG F+PLGL D + +L E+K+ RLAM+A LG+ VQ TG
Sbjct: 213 EKRL-------YPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGK 265
Query: 251 GPYQNLLDHLADPVNNNVLTSL 272
GP N HL+DP++ ++ +
Sbjct: 266 GPLNNWATHLSDPLHTTIIDTF 287
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 113/225 (50%), Gaps = 36/225 (16%)
Query: 41 VRAASTPPVK-QGADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEP 95
+R S V+ G DR W F+ SYL G PGDYG+D GLS DPE + E
Sbjct: 18 IRNVSRNAVEWYGPDRAKWLGPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQ 77
Query: 96 KWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAW------FQTGVIPPAGTYN 149
E+I+ R+AMLGA+G + PEIL K G + ++ + FQ G + G N
Sbjct: 78 ------ELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSN 131
Query: 150 YWADPYTLFVL--EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207
L +L ++ LMG E R N G +G DP +PG
Sbjct: 132 LIHAQSILAILGCQVVLMGLIEAYR----VNGGPLGEGL------------DPLHPGDK- 174
Query: 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252
F+PLGL D + + K+KE+KNGRLAM ++ G++VQ +VTG GP
Sbjct: 175 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGP 219
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 116/249 (46%), Gaps = 36/249 (14%)
Query: 41 VRAASTPPVKQGADRPLWFASKQSL--------------SYLDGSLPGDYGFDPLGLSDP 86
V+ +S P + G D W+ + SY+DG+L GDYGFDPL L
Sbjct: 65 VKKSSGKPSQAGGDLAKWYGKNRRFYLPSGLLDPATDVPSYMDGTLAGDYGFDPLKL--- 121
Query: 87 EGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG 146
G G I A EVI+ R+AML G + PE LG G + ET + AG
Sbjct: 122 -GADGKINDYRAA--EVIHARWAMLAIPGIVIPEALGIPGGVWTETGKVFLDG----EAG 174
Query: 147 TYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSG---DPAYP 203
+P +++AL E R A P + G K+ G DP P
Sbjct: 175 RPEILQNPIIFAGIQIALFAAVEGYRSGKVAPP----EGFVPGKGKFSGSDFAGLDPINP 230
Query: 204 GGPL--FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLA 261
GGPL FN + + + K+KE+KNGRLAM+A+LG FVQGL TG GP N H+A
Sbjct: 231 GGPLDFFN---VASTPEDLAILKVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVA 287
Query: 262 DPVNNNVLT 270
DP N +T
Sbjct: 288 DPFGYNFVT 296
>gi|356503628|ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 116/265 (43%), Gaps = 71/265 (26%)
Query: 51 QGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP----------------EGTGGFI- 93
+ DRPLW+ ++ YLDGSL GDYGFDP GL P + G I
Sbjct: 50 RDTDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDII 109
Query: 94 --------------EPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQET 132
+P +G E+I+GR+AML +GA+ E L T
Sbjct: 110 GTRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL---------T 160
Query: 133 ALAWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYF 187
+ W G + +Y P TL +E+ ++G+ E +R +
Sbjct: 161 GVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE------------ 208
Query: 188 LGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLV 247
L EK L YPGG F+PLGL D + +L E+K+ RLAM+ LG+ VQ
Sbjct: 209 LDPEKRL-------YPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAA 261
Query: 248 TGVGPYQNLLDHLADPVNNNVLTSL 272
TG GP N HL+DP++ ++ +
Sbjct: 262 TGKGPLNNWATHLSDPLHTTIIDTF 286
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 105/211 (49%), Gaps = 53/211 (25%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEI--- 121
SYL G PGDYG++ GLS DPE F + + L EVI+ R+AM +I
Sbjct: 51 SYLTGEFPGDYGWNTAGLSADPET---FAKNREL---EVIHSRWAMFDRWFKARSQIFSE 104
Query: 122 -----LGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
LG L+ ++ LA ++ ++ LMG E R
Sbjct: 105 GGLDYLGNPSLVHAQSILA---------------------IWACQVILMGAVEGYRIA-- 141
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 142 GGP--------------LGEVIDPLYPGGS-FDPLGLADDPEAFVELKVKEIKNGRLAMF 186
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 187 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 217
>gi|226856758|gb|ACO87356.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856760|gb|ACO87357.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856762|gb|ACO87358.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856764|gb|ACO87359.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856766|gb|ACO87360.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856768|gb|ACO87361.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856770|gb|ACO87362.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856774|gb|ACO87364.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856776|gb|ACO87365.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856778|gb|ACO87366.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856780|gb|ACO87367.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856784|gb|ACO87369.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856786|gb|ACO87370.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856788|gb|ACO87371.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856790|gb|ACO87372.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856792|gb|ACO87373.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856794|gb|ACO87374.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856798|gb|ACO87376.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856800|gb|ACO87377.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856802|gb|ACO87378.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856804|gb|ACO87379.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856806|gb|ACO87380.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856808|gb|ACO87381.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856810|gb|ACO87382.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856812|gb|ACO87383.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856814|gb|ACO87384.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856816|gb|ACO87385.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856818|gb|ACO87386.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856820|gb|ACO87387.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856822|gb|ACO87388.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856824|gb|ACO87389.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856826|gb|ACO87390.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856828|gb|ACO87391.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856830|gb|ACO87392.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856832|gb|ACO87393.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
Length = 148
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 94/170 (55%), Gaps = 23/170 (13%)
Query: 64 SLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIL 122
S +YL+GSLPGD GFDPLGL+ DPE +W E++NGR+AMLG VG + PE+L
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENL------RWYVQAELVNGRWAMLGVVGMLLPEVL 54
Query: 123 GKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSM 182
G+I W+ AG Y+A TLFV+E L + E RR+QD NPG +
Sbjct: 55 TSIGII---NVPKWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCV 105
Query: 183 GRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 232
+ F++Y + YPGG +FNPL ++ K KE+ NGR
Sbjct: 106 NQDPI--FKQYSLAPHECGYPGG-IFNPLNFAPTLEA----KEKELANGR 148
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
YL GS PG F+PLGL +D ++++ + E+ NGR AML ++G + ++T +G
Sbjct: 3 NYLNGS----LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIG 58
>gi|226856772|gb|ACO87363.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
Length = 148
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 94/170 (55%), Gaps = 23/170 (13%)
Query: 64 SLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIL 122
S +YL+GSLPGD GFDPLGL+ DPE +W E++NGR+AMLG VG + PE+L
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENL------RWYVQAELVNGRWAMLGVVGMLLPEVL 54
Query: 123 GKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSM 182
G+I W+ AG Y+A TLFV+E L + E RR+QD NPG +
Sbjct: 55 TTIGII---NVPKWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCV 105
Query: 183 GRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 232
+ F++Y + YPGG +FNPL ++ K KE+ NGR
Sbjct: 106 NQDPI--FKQYSLAPHECGYPGG-IFNPLNFAPTLEA----KEKELANGR 148
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
YL GS PG F+PLGL +D ++++ + E+ NGR AML ++G + ++T +G
Sbjct: 3 NYLNGS----LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTTIG 58
>gi|296085004|emb|CBI28419.3| unnamed protein product [Vitis vinifera]
Length = 172
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 105/227 (46%), Gaps = 77/227 (33%)
Query: 45 STP-PVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAY 100
STP + G DRP + S+Q+ SYL G PGDYG+D GLS DPE F + + L
Sbjct: 7 STPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL-- 61
Query: 101 GEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVL 160
EVI+ R+AMLGA+G + PEIL K G+ E ++
Sbjct: 62 -EVIHCRWAMLGALGCVFPEILSKNGVKFGEAVCI-------------------LAIWAC 101
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMGF E R +
Sbjct: 102 QVVLMGFVEGYRVE---------------------------------------------- 115
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL+DHLADPV NN
Sbjct: 116 --LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLVDHLADPVANN 160
>gi|13877547|gb|AAK43851.1|AF370474_1 chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|23198310|gb|AAN15682.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 113/262 (43%), Gaps = 71/262 (27%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF--------------------- 92
DRPLW+ S +LDGSL GDYGFDP GL P F
Sbjct: 54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113
Query: 93 ----------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETALA 135
+P +G E+I+GR+AML +GA++ E L T +
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL---------TGVT 164
Query: 136 WFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF 190
W G + +Y P TL +E+ ++G+ E +R + L
Sbjct: 165 WQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE------------LDS 212
Query: 191 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
EK L YPGG F+PL L D + +L E+K+ RLAM+A LG+ VQ TG
Sbjct: 213 EKRL-------YPGGKFFDPLSLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGK 265
Query: 251 GPYQNLLDHLADPVNNNVLTSL 272
GP N HL+DP++ ++ +
Sbjct: 266 GPLNNWATHLSDPLHTTIIDTF 287
>gi|18539429|gb|AAL74385.1|AF359117_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
gi|18539431|gb|AAL74386.1|AF359118_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
Length = 137
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 84/148 (56%), Gaps = 16/148 (10%)
Query: 36 KGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIE 94
K + RAA T +RPLWF +LDGSLPGD+GFDPLGL SDPE
Sbjct: 1 KAAMPRRAAVTVSQAVQTERPLWFPGNTPPPWLDGSLPGDFGFDPLGLGSDPETL----- 55
Query: 95 PKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP 154
KW+ E+++ R+AMLGA G PE+L K G++ +W+ AG Y+ D
Sbjct: 56 -KWMVQAELVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWYT------AGELEYFTDK 105
Query: 155 YTLFVLEMALMGFAEHRRFQDWANPGSM 182
TLFV+EM +G+AE RR+ D PGS+
Sbjct: 106 TTLFVVEMIFLGWAEGRRWADILKPGSV 133
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
D + PG F+PLGLG D +++K E+ + R AML G F+ L+T +G
Sbjct: 34 DGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIPELLTKLG 86
>gi|225440674|ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic
[Vitis vinifera]
gi|147784938|emb|CAN77492.1| hypothetical protein VITISV_010727 [Vitis vinifera]
Length = 288
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 120/263 (45%), Gaps = 71/263 (26%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPE-----------------------GT 89
+DRPLWF + +LDG+L GDYGFDP GL P GT
Sbjct: 51 SDRPLWFPGAVAPEWLDGTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVIGT 110
Query: 90 ---GGFI-----EPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
GG + +P +G E+I+GR+AML +GA+A E L T +
Sbjct: 111 RFEGGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALAVESL---------TGV 161
Query: 135 AWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
W G + +Y P TL +E+ ++G+ E +R + L
Sbjct: 162 TWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAE------------LD 209
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
EK L YPGG F+PLGL D + +L E+K+ RLAM+ LG+ VQ VTG
Sbjct: 210 PEKRL-------YPGGKFFDPLGLAADPEKKAVLQLAEIKHARLAMIGFLGFAVQAAVTG 262
Query: 250 VGPYQNLLDHLADPVNNNVLTSL 272
GP N HL+DP++ ++ ++
Sbjct: 263 KGPLNNWATHLSDPLHTTIIDNV 285
>gi|226500382|ref|NP_001141936.1| uncharacterized protein LOC100274085 [Zea mays]
gi|194706506|gb|ACF87337.1| unknown [Zea mays]
gi|414884911|tpg|DAA60925.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
gi|414884912|tpg|DAA60926.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 164
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 97/177 (54%), Gaps = 24/177 (13%)
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADP----------YTLF 158
ML A+G + PE+L GL+ W++ G G +Y P +
Sbjct: 1 MLAALGVVVPELLDLFGLV-HFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIA 59
Query: 159 VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEK 218
+ + LM E+ R+ G + YL GD YPGGPLF+PLGL KD
Sbjct: 60 ICQALLMVGPEYARY--------CGIEALEPLGIYL--PGDINYPGGPLFDPLGLSKDPV 109
Query: 219 SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
+ +D K+KE+KNGRLAM+A G+++Q VTG GP QNL++HL+DP+NNN+L+S FH
Sbjct: 110 AFEDLKVKEIKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNNILSS--FH 164
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 132/287 (45%), Gaps = 45/287 (15%)
Query: 12 TSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQ----------GADRPLWFAS 61
T+ V+T ++ A P + + + VR A+ PV++ G+D+ W+
Sbjct: 54 TAPVKTVKKAAPAPKKTVPMKTVVRKAAPVRKAA--PVRKAGKASGVNQAGSDKSKWYGP 111
Query: 62 KQSL--------------SYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGR 107
+ L SY++G+L GDYGFDPL L G G I +A EV + R
Sbjct: 112 NRRLYLPAGLLDINTDVPSYMNGTLAGDYGFDPLQL----GKDGKIAQYRIA--EVQHAR 165
Query: 108 YAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVI---PPAGTYNYWADPYTLFVLEMAL 164
+AML G + PE LG G W +TG + AG +PY +E+AL
Sbjct: 166 WAMLAVPGVVIPEALGVPGG-------NWTETGKVFLDGEAGRPEILGNPYLFTAIEVAL 218
Query: 165 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 224
+ E R P Y FE DP PGGPL + L + + + K
Sbjct: 219 LAGVEGYRSGKLEAPAGFAPIYG-KFEGKDFKGLDPINPGGPL-DFLNVASTPEDLAILK 276
Query: 225 LKEVKNGRLAMLAILGYFVQGLVT-GVGPYQNLLDHLADPVNNNVLT 270
+KE+KNGRLAM+A+LG FVQG T G GP N H+ADP N +T
Sbjct: 277 VKEIKNGRLAMIAMLGVFVQGATTGGEGPATNWAKHVADPFAYNFVT 323
>gi|226856796|gb|ACO87375.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 94/170 (55%), Gaps = 23/170 (13%)
Query: 64 SLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIL 122
S +YL+GSLPGD GFDPLGL+ DPE +W E++NGR+AMLG VG + PE+L
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENL------RWYVQAELVNGRWAMLGVVGMLLPEVL 54
Query: 123 GKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSM 182
G+I W+ AG Y+A TLFV+E L + E RR+QD NPG +
Sbjct: 55 TSIGII---NVPKWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCV 105
Query: 183 GRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 232
+ L ++Y + YPGG +FNPL ++ K KE+ NGR
Sbjct: 106 NQDPIL--KQYSLAPHECGYPGG-IFNPLNFAPTLEA----KEKELANGR 148
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
YL GS PG F+PLGL +D ++++ + E+ NGR AML ++G + ++T +G
Sbjct: 3 NYLNGS----LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIG 58
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 108/197 (54%), Gaps = 33/197 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
YL G +PGDYG+DP GLS P+ K+ A+ E+I+ R+AMLGA G I PE K
Sbjct: 93 EYLTGEVPGDYGYDPFGLSKKPDDF-----EKYQAF-ELIHARWAMLGAAGFIIPEAFNK 146
Query: 125 AGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLF---VLEMALMGFAEHRRFQDWAN 178
G A+ WF+TG + G T NY+ P L V E+ L+G AE+ R +
Sbjct: 147 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVILVGGAEYFRITNG-- 203
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
LGF+ D +PGGP F+PLGL KD K+KE+KNGRLAM A+
Sbjct: 204 ---------LGFD-------DKLHPGGP-FDPLGLAKDPDQAALLKVKEIKNGRLAMFAM 246
Query: 239 LGYFVQGLVTGVGPYQN 255
LG+F+Q VTG P++
Sbjct: 247 LGFFLQAYVTGDVPWRT 263
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 117/246 (47%), Gaps = 45/246 (18%)
Query: 38 SFVVRAASTPPVK---QGADRPL-----WFASKQSLSYLDGSLPGDYGFDPLGL-SDPEG 88
SFV R A+ P K R + W + +YLDG LPG +GFDP GL S P
Sbjct: 9 SFVARGAARPATKLPKSNGSRVVMKAGNWLPGSDTPAYLDG-LPGSFGFDPFGLGSTPAN 67
Query: 89 TGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTY 148
F E E+++ R+AM G GA+ E+LG+ A W G P TY
Sbjct: 68 LQRFQE------AELVHSRWAMAGVAGALGAELLGQGDWY---QAPLWAVNGGAP---TY 115
Query: 149 NYWADPY---TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 205
P+ TL +E + AE +R A P + R+Y PGG
Sbjct: 116 LGIPVPFNLSTLLAIEFVAIAGAEAQRN---AEPDAEKRKY----------------PGG 156
Query: 206 PLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVN 265
F+PLG KD K +++ KLKE+KNGRLAMLA +G+ Q TG GP + L HLADP
Sbjct: 157 -AFDPLGFSKDSKVLEENKLKELKNGRLAMLAFVGFIAQHAATGKGPLEALKLHLADPWG 215
Query: 266 NNVLTS 271
N T+
Sbjct: 216 ANFATN 221
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 45/217 (20%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W+ + +YLDGS+PGDYG+DPL + +PE KW GE+ NGR+AM+G G
Sbjct: 49 WYTGAKPPAYLDGSMPGDYGYDPLRMGGNPELL------KWYQQGEIENGRWAMIGVAGM 102
Query: 117 IAPEILGKAGL--IPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQ 174
+ + L + G+ +P W++ G + A + D TL +E+ + E R
Sbjct: 103 LFTDALTQFGISDLPD-----WYEAGAVAQASSP---FDLQTLIAIEIFVFATVEGFRIS 154
Query: 175 DWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLA 234
W G G +G + D +LKE+KNGRLA
Sbjct: 155 TWKKTGKPGFLDIMGMDS----------------------------PDMRLKEIKNGRLA 186
Query: 235 MLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
M A +G+ Q V G+GP + LL+HL +P NNV ++
Sbjct: 187 MFAFVGFVAQYFVNGMGPVEGLLNHLENPQQNNVFST 223
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 115/259 (44%), Gaps = 50/259 (19%)
Query: 20 QILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFD 79
+ L AR+A +P G S + V S +K G W + ++L LPG+YGFD
Sbjct: 6 RTLSARTA-APRGFSGRRVAAVSNGSRVTMKAGN----WLPGSDAPAWLPDDLPGNYGFD 60
Query: 80 PLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQ 138
PL L +P F E EVI+GR+AMLG G++A E+LG W+
Sbjct: 61 PLSLGKEPASLKRFTES------EVIHGRWAMLGVAGSLAVELLGYGN---------WYD 105
Query: 139 TGVIPPAGTYNYWA------DPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK 192
+ G W D L E M AE +R
Sbjct: 106 APLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQR-------------------- 145
Query: 193 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252
G +G YPGG F+PLG KD + KLKE+KNGRLAM+A LG+ Q TG GP
Sbjct: 146 --GDAGGVVYPGGA-FDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGP 202
Query: 253 YQNLLDHLADPVNNNVLTS 271
L +HLA+P N T+
Sbjct: 203 IAALGEHLANPWGANFATN 221
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 115/259 (44%), Gaps = 50/259 (19%)
Query: 20 QILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFD 79
+ L AR+A +P G S + V S +K G W + ++L LPG+YGFD
Sbjct: 2 RTLSARTA-APRGFSGRRVAAVSNGSRVTMKAGN----WLPGSDAPAWLPDDLPGNYGFD 56
Query: 80 PLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQ 138
PL L +P F E EVI+GR+AMLG G++A E+LG W+
Sbjct: 57 PLSLGKEPASLKRFTES------EVIHGRWAMLGVAGSLAVELLGYGN---------WYD 101
Query: 139 TGVIPPAGTYNYWA------DPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK 192
+ G W D L E M AE +R
Sbjct: 102 APLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQR-------------------- 141
Query: 193 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252
G +G YPGG F+PLG KD + KLKE+KNGRLAM+A LG+ Q TG GP
Sbjct: 142 --GDAGGVVYPGGA-FDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGP 198
Query: 253 YQNLLDHLADPVNNNVLTS 271
L +HLA+P N T+
Sbjct: 199 IAALGEHLANPWGANFATN 217
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 125/248 (50%), Gaps = 37/248 (14%)
Query: 14 SVETARQILGARSAQSPTGSSRKGSFVVRAASTPP-VKQGADRPLWFA--SKQSLSYLDG 70
SV +A+ +G++ A +S + + + +S P V G DRP + S SYL G
Sbjct: 2 SVISAKTFIGSQVANKKMVTSMRRT--QKKSSAPDNVWYGPDRPQFLGPFSGDCPSYLTG 59
Query: 71 SLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIP 129
PGDYG+D GLS DPE + E E+I+ R+AMLGA+G + PEIL K G +
Sbjct: 60 EFPGDYGWDTAGLSADPETFRRYREQ------ELIHARWAMLGALGCVTPEILSKYGGVS 113
Query: 130 QETALAW------FQTGVIPPAGTYNYWADPYTLFVL--EMALMGFAEHRRFQDWANPGS 181
++ + FQ G + G N L +L ++ LMG E R N G
Sbjct: 114 FGESVWFKAGSQIFQEGGLDYLGNSNLVHAQSILAILGCQVLLMGAIEAYR----VNGGP 169
Query: 182 MGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGY 241
+G DP YPG F+PLGL D + + K+KE+KNGRLAM ++ G+
Sbjct: 170 LGEGL------------DPLYPGDK-FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGF 216
Query: 242 FVQGLVTG 249
+VQ +VTG
Sbjct: 217 YVQAVVTG 224
>gi|159468772|ref|XP_001692548.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278261|gb|EDP04026.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 213
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 111/233 (47%), Gaps = 50/233 (21%)
Query: 36 KGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP 95
+G VV AAS RP W ++L G+L GD GFDPLGL EG
Sbjct: 17 RGQRVVAAASA--------RPTWLPGLNPPAHLKGALAGDNGFDPLGLGQDEG-----RL 63
Query: 96 KWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY 155
KW A E NGR+AM+ G + E+LG + P AW++ AG Y
Sbjct: 64 KWYAEAEKTNGRWAMMAVAGILGQELLG---VTP-----AWWE------AGAKEYDIPAQ 109
Query: 156 TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK 215
L +E +MGF E +R+Q + G+ G F+ ++P F+P G+
Sbjct: 110 ALTPIEFIVMGFLEIKRYQGFKQTGTSG---FIN-----------SFP----FDPAGM-- 149
Query: 216 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
+ SM KEVKNGRLAM+A +G+ VQ L T P + L HLADP N+
Sbjct: 150 NSPSMAT---KEVKNGRLAMVAFIGFCVQALATRTQPIEGLTAHLADPFGKNI 199
>gi|226856782|gb|ACO87368.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 94/170 (55%), Gaps = 23/170 (13%)
Query: 64 SLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIL 122
S +YL+GSLPGD GFDPLGL+ DPE +W E++NGR+AMLG VG + PE+L
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENL------RWYVQAELVNGRWAMLGVVGMLLPEVL 54
Query: 123 GKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSM 182
G+I W+ AG Y+A TLFV+E L + E RR+QD NPG +
Sbjct: 55 TSIGII---NVPKWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCV 105
Query: 183 GRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 232
+ F++Y + YPGG +FNPL ++ K KE+ NGR
Sbjct: 106 NQGPI--FKQYSLAPHECGYPGG-IFNPLNFAPTLEA----KEKELANGR 148
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
YL GS PG F+PLGL +D ++++ + E+ NGR AML ++G + ++T +G
Sbjct: 3 NYLNGS----LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIG 58
>gi|19421770|gb|AAL87738.1|AF244524_1 chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 222
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 109/233 (46%), Gaps = 50/233 (21%)
Query: 36 KGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP 95
+G VV AAS RP W ++L G+L GD GFDPLGL EG
Sbjct: 17 RGQRVVAAASA--------RPTWLPGLNPPAHLKGALAGDNGFDPLGLGQDEG-----RL 63
Query: 96 KWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY 155
KW A E NGR+AM+ G + E+LG AW++ AG Y
Sbjct: 64 KWYAEAEKTNGRWAMMAVAGILGQELLG--------VTPAWWE------AGAKEYDIPAQ 109
Query: 156 TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK 215
L +E +MGF E +R+Q + G+ G F+ ++P F+P G+
Sbjct: 110 ALTPIEFIVMGFLEIKRYQGFKQTGTSG---FIN-----------SFP----FDPAGM-- 149
Query: 216 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNV 268
+ SM KEVKNGRLAM+A +G+ VQ L T P + L HLADP N+
Sbjct: 150 NSPSMAT---KEVKNGRLAMVAFIGFCVQALATRTQPIEGLTAHLADPFGKNI 199
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 109/217 (50%), Gaps = 36/217 (16%)
Query: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS PE F + + L EVI+ R AM A+G I PE+L
Sbjct: 71 SYLTGEFPGDYGWDTAGLSAYPET---FAKNREL---EVIHSRCAMSAALGCIFPELLSV 124
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G E WF+ G I G +Y +P ++ ++ LMG E R
Sbjct: 125 MGQGFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIA- 181
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
LG DP YPG F+ LGL +D ++ + K+KE+KNGRLAM
Sbjct: 182 ---------------RGPLGEVTDPLYPGS--FDSLGLAEDTEAFAELKVKELKNGRLAM 224
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
++ G+FVQ +V+ +NL DHL VNNN L+++
Sbjct: 225 FSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNV 261
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 114/261 (43%), Gaps = 71/261 (27%)
Query: 55 RPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP----------------EGTGGFI----- 93
RPLW+ ++ YLDGSL GDYGFDP GL P + G I
Sbjct: 54 RPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRT 113
Query: 94 ----------EPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAW 136
+P +G E+I+GR+AML +GA+ E L T + W
Sbjct: 114 ELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL---------TGVTW 164
Query: 137 FQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 191
G + +Y P TL +E ++G+ E +R + L E
Sbjct: 165 QDAGKVELVEGSSYLGQPLPFSITTLIWIEALVIGYIEFQRNAE------------LDPE 212
Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
K L YPGG F+PLGL D + +L E+K+ RLAM+ LG+ VQ VTG G
Sbjct: 213 KRL-------YPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAVTGKG 265
Query: 252 PYQNLLDHLADPVNNNVLTSL 272
P N HL+DP++ ++ +
Sbjct: 266 PLNNWATHLSDPLHTTIIDTF 286
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 105/204 (51%), Gaps = 35/204 (17%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRY 108
G DR W + Q +YL G LPGDYG+D GL +DP + E EVI+ R+
Sbjct: 154 GPDRAKWLGPLTGQVPAYLTGELPGDYGWDTAGLGADPVTLARYRE------AEVIHARW 207
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FV 159
AMLGA+G + PE+L G +P W++ G I A NY +P + F+
Sbjct: 208 AMLGALGVVTPELLAGNG-VPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFL 266
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+A+MG E R+ G LG D YPGGP F+PLGL D +
Sbjct: 267 STLAIMGAVEGYRY---------------GGGWPLGDDLDRLYPGGP-FDPLGLANDPDA 310
Query: 220 MKDFKLKEVKNGRLAMLAILGYFV 243
+ K+KEVKNGRLAM+A+LG++V
Sbjct: 311 FAELKVKEVKNGRLAMVAMLGFYV 334
>gi|445116|prf||1908421A light-harvesting complex IIa protein
Length = 286
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 115/263 (43%), Gaps = 71/263 (26%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP----------------EGTGGFI--- 93
DRPLWF Q+ YLDG+L GDYGFDP GL P + G I
Sbjct: 49 TDRPLWFPGAQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGEIIGT 108
Query: 94 ------------EPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
+P +G E+I+GR+AML +GA+ E L T +
Sbjct: 109 RFEDADVKSTPFQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWL---------TGV 159
Query: 135 AWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
W G + +Y P TL +E+ ++G+ E +R + L
Sbjct: 160 TWQDAGKVELVDGSSYLGQPLPFTITTLIWIEVLVIGYIEFQRNAE------------LD 207
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
E+ L YPGG F+PLGL D + + +L E+K+ RLAM+A LG+ VQ TG
Sbjct: 208 PERRL-------YPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATG 260
Query: 250 VGPYQNLLDHLADPVNNNVLTSL 272
G N HL+DP++ + +
Sbjct: 261 KGRLNNWATHLSDPLHTTIFDTF 283
>gi|15081739|gb|AAK82524.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
Length = 290
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 113/262 (43%), Gaps = 71/262 (27%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGF--------------------- 92
DRPLW+ S +LDGSL GDYGFDP GL P F
Sbjct: 54 DRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTR 113
Query: 93 ----------IEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETALA 135
+P +G E+I+GR+AML +GA++ E L T +
Sbjct: 114 TEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL---------TGVT 164
Query: 136 WFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF 190
W G + +Y P TL +E+ ++G+ E +R + L
Sbjct: 165 WQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE------------LDS 212
Query: 191 EKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
EK L YPGG F+PLGL D + +L E+K+ RLAM+A LG+ VQ TG
Sbjct: 213 EKRL-------YPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGK 265
Query: 251 GPYQNLLDHLADPVNNNVLTSL 272
GP HL+DP++ ++ +
Sbjct: 266 GPRNYWATHLSDPLHTTIIDTF 287
>gi|238858956|dbj|BAH70299.1| chlorophyll a/b binding protein [Vicia cinerea]
Length = 266
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 135/287 (47%), Gaps = 53/287 (18%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA 60
MA ++ SS T + + + ++ + ++RK + + AS+ G DR +
Sbjct: 1 MAASSMALSSPTLAGKPVKLTPSSQELGASRFTTRKSATTKKVASSGSPWYGPDRVKYLG 60
Query: 61 --SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIE--------PKWLAYGEVINGRYA 109
S + SYL G PGDYG+D GLS DPE + P W+ + +V + +
Sbjct: 61 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNVSLRSSTPDGPCWVPW-DVSSQSFC 119
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
+ + ++ L F+ G I G +Y +P ++
Sbjct: 120 PVTVLNSVK---------------LCGFKAGSQIFSEGGLDYLGNPSLGSRQSILAIWAT 164
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R G +G DP YPGG F+PLGL +D ++
Sbjct: 165 QVILMGAVEGYRIAG----GPLGEVV------------DPLYPGGS-FDPLGLAEDPEAF 207
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|302144191|emb|CBI23318.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 104/209 (49%), Gaps = 45/209 (21%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + L EVI+GR+AMLGA G I P
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGAFGCITP 117
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN 178
E+L K + + + WF+ G I G +Y +P + + +
Sbjct: 118 EVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAV------------- 163
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
LGF+ L G L G + K+KE+KNGRLAM ++
Sbjct: 164 ---------LGFQVVLMG--------------LVEGYRINGLPGLKVKEIKNGRLAMFSM 200
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 201 FGFFVQAIVTGKGPLENLLDHLDNPVANN 229
>gi|414590633|tpg|DAA41204.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 199
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 89/169 (52%), Gaps = 22/169 (13%)
Query: 36 KGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIE 94
+ SF VRAA+ P +RP+WF +LDGSLPGD+GFDP GL SDPE
Sbjct: 42 RPSFAVRAAADP------NRPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESL----- 90
Query: 95 PKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP 154
+W E+++ R+AMLGA G PE L K G++ W+ AG Y+ D
Sbjct: 91 -RWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVL---NTPFWYT------AGEQQYFTDT 140
Query: 155 YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYP 203
TLF++E+ L+G+AE RR+ D PGS+ K G P+ P
Sbjct: 141 TTLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGPSPP 189
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 131/279 (46%), Gaps = 48/279 (17%)
Query: 1 MATQALVSSSL----TSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRP 56
+A QAL S L + +E + +L ++AQ RAA GA RP
Sbjct: 78 VAVQALADSKLGKDLLAGLEAQKPLLRRQAAQQEAER--------RAARQQSPWFGAARP 129
Query: 57 LWFA--SKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGA 113
LW S Q +L G LPGDYG+DP GL DP ++E E+++ R+AMLGA
Sbjct: 130 LWLGPLSTQPPQHLSGELPGDYGWDPAGLGRDPAKLDRYVEL------ELLHARWAMLGA 183
Query: 114 VGAIAPEILGKAGLIPQETALA--WFQTGV--IPPAGTYNYWADP----------YTLFV 159
+GA+ PE+L AG T L W+ G + Y P +
Sbjct: 184 LGAVVPELLQLAG---SATFLEDRWWNVGYAKLTTGEELAYLGVPGLRVAGGQGVAIIAF 240
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LM E+ R + +G FL GD YPGG LF+PL L D +
Sbjct: 241 CQVLLMFGPEYARACGISALEPLG--VFL--------PGDKNYPGGWLFDPLQLSGDAER 290
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLD 258
+ +++E+KNGRLAM+A LG+ Q VT GP QNLLD
Sbjct: 291 YEAMRVREIKNGRLAMVAWLGFAAQAAVTRQGPVQNLLD 329
>gi|242045514|ref|XP_002460628.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
gi|241924005|gb|EER97149.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
Length = 160
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 92/167 (55%), Gaps = 28/167 (16%)
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ +
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAV 58
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 59 QVVLMGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 101
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 102 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 148
>gi|302144193|emb|CBI23320.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 104/209 (49%), Gaps = 45/209 (21%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S Q+ SYL G PGDYG+D GLS DPE F + L EVI+GR+AMLGA G I P
Sbjct: 59 SAQTPSYLTGEFPGDYGWDTAGLSADPEA---FARNRAL---EVIHGRWAMLGAFGCITP 112
Query: 120 EILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAN 178
E+L K + + + WF+ G I G +Y +P + + +
Sbjct: 113 EVLEKWVKVDFKEPV-WFKAGAQIFSEGGLDYLGNPNLVHAQSILAV------------- 158
Query: 179 PGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAI 238
LGF+ L G L G + K+KE+KNGRLAM ++
Sbjct: 159 ---------LGFQVVLMG--------------LVEGYRINGLPGLKVKEIKNGRLAMFSM 195
Query: 239 LGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
G+FVQ +VTG GP +NLLDHL +PV NN
Sbjct: 196 FGFFVQAIVTGKGPLENLLDHLDNPVANN 224
>gi|307106432|gb|EFN54678.1| hypothetical protein CHLNCDRAFT_31627 [Chlorella variabilis]
Length = 246
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 110/237 (46%), Gaps = 41/237 (17%)
Query: 35 RKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIE 94
R G V R V A RP W+ +LDGS+ GDYGFDPL L G+
Sbjct: 12 RVGVRVARPTRASSVVVAAARPTWYPGATPPKHLDGSMLGDYGFDPLRL----GSKDKDV 67
Query: 95 PKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP 154
K+ GE+ NGR+AM G + +++G L P W++ G D
Sbjct: 68 LKYYREGELTNGRWAMAAVAGILFTDLVG---LGP------WWEAG-----AKVESSFDL 113
Query: 155 YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG 214
TL ++E+ E R + + G G LG P P F+PL +
Sbjct: 114 KTLIIVEIVTFAILEGFRAKAYEKTGETG----------LG-------PFAP-FDPLNMR 155
Query: 215 KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
DE +LKE+KNGRLAMLAILG+ Q V G GP + L HLADP +NN+ TS
Sbjct: 156 SDET-----RLKELKNGRLAMLAILGFSSQAAVQGKGPIECLQAHLADPGHNNIFTS 207
>gi|224034127|gb|ACN36139.1| unknown [Zea mays]
Length = 191
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 91/167 (54%), Gaps = 28/167 (16%)
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAC 58
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 59 QVVLMGAIEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAF 101
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 102 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 148
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 110/215 (51%), Gaps = 33/215 (15%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + ++LDGS PGD+GFDPLGL PE + E E+I+ R+AML G
Sbjct: 50 WMPGQPRPAHLDGSAPGDFGFDPLGLGVVPENLERYKE------SELIHCRWAMLAVPGV 103
Query: 117 IAPEILGKAGLIPQE--TALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQ 174
+ PE LG + + A+ Q + + Y+ ++F L+MA FAE +R
Sbjct: 104 LIPEALGLGNWVEAQKWAAIPGGQATYLGVPVPWGYFPIILSIFFLKMA---FAESQRNG 160
Query: 175 DWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLA 234
+ P R+Y PGG F+PLG KD +++K+KE+KNGRLA
Sbjct: 161 E---PDLEKRKY----------------PGG-AFDPLGFSKDPAKFEEYKVKEIKNGRLA 200
Query: 235 MLAILGYFVQGLVT-GVGPYQNLLDHLADPVNNNV 268
+LA +G+ VQ G GP +NL HL+DP + N+
Sbjct: 201 LLAFVGFCVQASANPGTGPLENLATHLSDPWHKNI 235
>gi|322812534|pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 115/260 (44%), Gaps = 72/260 (27%)
Query: 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP-------------------------- 86
DRPLW+ ++ YLDGSL GDYGFDP GL P
Sbjct: 9 TDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGT 68
Query: 87 -----EGTGGFIEPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETAL 134
+ ++P +G E+I+GR+AML +GA+ E L T +
Sbjct: 69 RTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGL---------TGI 119
Query: 135 AWFQTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLG 189
W G + +Y P TL +E+ ++G+ E +R + L
Sbjct: 120 TWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAE------------LD 167
Query: 190 FEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249
EK L YPGG F+PLGL D + +L E+K+ RLAM+ LG+ VQ VTG
Sbjct: 168 TEKRL-------YPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTG 219
Query: 250 VGPYQNLLDHLADPVNNNVL 269
GP N + HL+DP++ +L
Sbjct: 220 KGPLNNWVTHLSDPLHTTIL 239
>gi|388507164|gb|AFK41648.1| unknown [Lotus japonicus]
Length = 160
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 91/167 (54%), Gaps = 28/167 (16%)
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILVIWAT 58
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 59 QVILMGAVEGYRIA--GGP--------------LGEVTDPLYPGGS-FDPLGLADDPEAF 101
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHL+DPVNNN
Sbjct: 102 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 148
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 104/209 (49%), Gaps = 36/209 (17%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DR LW S + +YL G PGDYG+D GLS DPE + E E+I+ R+
Sbjct: 48 GPDRGLWLGPLSGTTPAYLTGEFPGDYGWDSAGLSADPETFKRYREL------ELIHARW 101
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L K G E WF+ G I G +Y +
Sbjct: 102 AMLGALGCVTPELLAKNGTPIAEPV--WFKAGAQIFQEGGLDYLGNAGLIHAQSILATLA 159
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
+++ LMG E R N G G D +PGG F+PLGL +D +
Sbjct: 160 VQVILMGAIEGYR----VNGGPAGEGL------------DKLHPGGQFFDPLGLAEDPDA 203
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVT 248
+ K+KE+KNGRLAM ++ G+FVQ +VT
Sbjct: 204 FAELKVKEIKNGRLAMFSMFGFFVQAIVT 232
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 100/221 (45%), Gaps = 45/221 (20%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + ++L LPG+YGFDPL L DP F E EVI+GR+AMLG G+
Sbjct: 3 WLPGSDAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTE------SEVIHGRWAMLGVAGS 56
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWA------DPYTLFVLEMALMGFAEH 170
+A E+LG W+ + G W D TL E M AE
Sbjct: 57 LAVELLGYGN---------WYDAPLWAVNGGKATWFGIDVPFDLNTLLAFEFVAMAAAEG 107
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKN 230
+R G +G YPGG F+PLG KD + KLKEVKN
Sbjct: 108 QR----------------------GDAGGVVYPGGA-FDPLGFAKDASKSGELKLKEVKN 144
Query: 231 GRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 271
GRLAM+A LG+ Q TG GP L +HL++P N T+
Sbjct: 145 GRLAMVAFLGFVAQHAATGKGPIAALGEHLSNPWGANFATN 185
>gi|227206230|dbj|BAH57170.1| AT3G27690 [Arabidopsis thaliana]
Length = 160
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 90/167 (53%), Gaps = 28/167 (16%)
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G PEIL K G+ E WF+ G I G +Y +P ++
Sbjct: 1 MLGALGCTFPEILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAC 58
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMGF E R P LG DP YPGG F+PL L +D ++
Sbjct: 59 QVVLMGFIEGYRIG--GGP--------------LGEGLDPLYPGGA-FDPLNLAEDPEAF 101
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPV NN
Sbjct: 102 SELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 148
>gi|40736929|dbj|BAD06999.1| chlorophyll a/b-binding protein-like protein [Ipomoea nil]
Length = 51
Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/51 (92%), Positives = 50/51 (98%)
Query: 225 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
LKEVKNGRLAMLAILGYF+Q LVTGVGPYQNLLDHLADPVNNN+LT+LKFH
Sbjct: 1 LKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTNLKFH 51
>gi|125660620|gb|ABN49455.1| photosystem I chlorophyll a/b binding protein [Pisum sativum]
Length = 144
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 16/156 (10%)
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDW 176
+ PE+ G+I W+ AG Y+A TLFV+E L + E RR+QD
Sbjct: 2 LLPEVFTSIGII---NVPKWYD------AGKEEYFASSSTLFVIEFILFHYVEIRRWQDI 52
Query: 177 ANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAML 236
NPGS+ + F++Y +G+ YPGG +FNPL ++ K KE+ NGRLAML
Sbjct: 53 KNPGSVNQDPI--FKQYSLPAGEVGYPGG-IFNPLNFAPTLEA----KEKEIANGRLAML 105
Query: 237 AILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
A LG+ +Q VTG GP+ NLL H++DP +N ++ +L
Sbjct: 106 AFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 141
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 115/232 (49%), Gaps = 38/232 (16%)
Query: 38 SFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIE 94
SF +R T +RPLW + + SYLDGSL GDYG+D GLS PE
Sbjct: 10 SFAMR--RTTAATSAPERPLWLGPYTGATPSYLDGSLVGDYGWDTSGLSTTPEALLRN-- 65
Query: 95 PKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWAD 153
E+++ R+AMLGA+G++ PE+L P + WF+ G I G +Y +
Sbjct: 66 ----RELELLHARWAMLGALGSLLPELLATYAGTPLLEPV-WFKAGAQIFSPGGLDYLGN 120
Query: 154 P--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 205
P + ++ LMG +E R P LG GD YPG
Sbjct: 121 PSLVHAQSILAILGFQVLLMGLSEGYRLA--GGP--------------LGEVGDALYPGA 164
Query: 206 PLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLL 257
F+PLG +D +S+ + + KE+KNGRLAMLA+LG + Q LVTG GP N L
Sbjct: 165 S-FDPLGFSEDPESLLELQTKEIKNGRLAMLAMLGMYTQALVTGKGPVSNWL 215
>gi|168067076|ref|XP_001785452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168067086|ref|XP_001785457.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662935|gb|EDQ49732.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662940|gb|EDQ49737.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 296
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 139/320 (43%), Gaps = 78/320 (24%)
Query: 1 MATQALVSSSLTSSVETARQILGARS-AQSPTGSSRKGSFVVRAASTPPVKQ---GADRP 56
+ + ++ +SS SVE GAR A+S G K V + AS K GADRP
Sbjct: 5 LRSASIAASSFVGSVECFGVKNGARVVARSSLGG--KAKQVAKQASKTLKKSSGAGADRP 62
Query: 57 LWFASKQSLSYLDGSLPGDYGFDPLGL-SDPE----------------GTGGFI------ 93
LWF ++ +LDGSLPGDYGFDPL L PE G I
Sbjct: 63 LWFPGARAPEWLDGSLPGDYGFDPLSLGKSPEYLQIELDSLNQNLAKNEAGDVIGTRISK 122
Query: 94 ---------EPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWF 137
+P +G E+I+GR+AML +GA++ E T + W
Sbjct: 123 KEEIAPTPFQPYSEVFGLQRFRECELIHGRWAMLAILGALSVEAF---------TGVTWQ 173
Query: 138 QTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK 192
G + +Y+ P +L +E L+GF E +R + L EK
Sbjct: 174 DAGKVELVDGASYFGLPLPFSITSLVYIEAFLVGFIEFQRNAE------------LDPEK 221
Query: 193 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252
L YPGG F+PL E+ + KL E+K+ RLAM+A LG+ Q TG GP
Sbjct: 222 RL-------YPGGKFFDPLNFADTEEKKETLKLAEIKHARLAMVAALGFAAQAAATGKGP 274
Query: 253 YQNLLDHLADPVNNNVLTSL 272
N HLADP++ + +
Sbjct: 275 LDNWATHLADPLHTTIFDTF 294
>gi|148908677|gb|ABR17446.1| unknown [Picea sitchensis]
Length = 160
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 89/167 (53%), Gaps = 28/167 (16%)
Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVL 160
MLGA+G + PE+L K G+ E WF+ G I G +Y +P ++
Sbjct: 1 MLGALGCVFPELLAKTGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAS 58
Query: 161 EMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSM 220
++ LMG E R G +G DP YPGG F+PLGL D ++
Sbjct: 59 QVVLMGLIEGYR----VGGGPLGEGL------------DPLYPGGA-FDPLGLADDPEAF 101
Query: 221 KDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+ K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADP NN
Sbjct: 102 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPTANN 148
>gi|414590634|tpg|DAA41205.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
gi|414590635|tpg|DAA41206.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 196
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 22/161 (13%)
Query: 36 KGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIE 94
+ SF VRAA+ P +RP+WF +LDGSLPGD+GFDP GL SDPE
Sbjct: 42 RPSFAVRAAADP------NRPIWFPGSTPPPWLDGSLPGDFGFDPWGLGSDPESL----- 90
Query: 95 PKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP 154
+W E+++ R+AMLGA G PE L K G++ W+ AG Y+ D
Sbjct: 91 -RWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVL---NTPFWYT------AGEQQYFTDT 140
Query: 155 YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG 195
TLF++E+ L+G+AE RR+ D PGS+ K G
Sbjct: 141 TTLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTG 181
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 109/209 (52%), Gaps = 37/209 (17%)
Query: 52 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRY 108
G DR + S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+
Sbjct: 51 GTDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRW 104
Query: 109 AMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFV 159
AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++
Sbjct: 105 AMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWA 162
Query: 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKS 219
++ LMG E R P LG DP YPGG F+PLGL D ++
Sbjct: 163 SQVILMGAVEGYRIG--GGP--------------LGEVVDPLYPGGS-FDPLGLADDPEA 205
Query: 220 MKDFKLKEVKNGRLAMLAILGYFVQGLVT 248
+ K+KE+KNGRLAM ++ G+FVQ +VT
Sbjct: 206 FAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
>gi|356496185|ref|XP_003516950.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 113/260 (43%), Gaps = 71/260 (27%)
Query: 56 PLWFASKQSLSYLDGSLPGDYGFDPLGLSDP----------------EGTGGFI------ 93
PLW+ ++ YLDGSL GDYGFDP GL P + G I
Sbjct: 55 PLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTE 114
Query: 94 ---------EPKWLAYG-------EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWF 137
+P +G E+I+GR+AML +GA+ E L T + W
Sbjct: 115 LADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL---------TGVTWQ 165
Query: 138 QTGVIPPAGTYNYWADPY-----TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK 192
G + +Y P TL +E+ ++G+ E +R + L EK
Sbjct: 166 DAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE------------LDPEK 213
Query: 193 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252
L YPGG F+PLGL D + +L E+K+ RLAM+ LG+ VQ TG GP
Sbjct: 214 RL-------YPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGP 266
Query: 253 YQNLLDHLADPVNNNVLTSL 272
N HL+DP++ ++ +
Sbjct: 267 LNNWATHLSDPLHTTIIDTF 286
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 101/222 (45%), Gaps = 47/222 (21%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + +LDGS PGD+GFDPL L PE + E E+I+ R+AML G
Sbjct: 49 WMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKE------SELIHCRWAMLAVPGM 102
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + A W P Y+ P + +E + F E
Sbjct: 103 LIPEALGLGNWV---EAQKWAAI----PGSQATYFGVPVPWGYLPIVLAVEFLAIAFVES 155
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R G DP YPGG F+PLG KD K++K+KE
Sbjct: 156 QR----------------------NGEPDPEKRKYPGG-AFDPLGFSKDPVKFKEYKVKE 192
Query: 228 VKNGRLAMLAILGYFVQGLVT-GVGPYQNLLDHLADPVNNNV 268
+KNGRLA+LA +G+ VQ G GP +NL HL+DP + N+
Sbjct: 193 IKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHRNI 234
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 100/222 (45%), Gaps = 47/222 (21%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + +LDGS PGD+GFDPL L PE + E E+I+ R+AML G
Sbjct: 50 WMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKE------SELIHCRWAMLAVPGV 103
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + A W P Y P + +E + F E
Sbjct: 104 LIPEALGLGNWV---EAQKWAAI----PGNQATYLGAPVPWGYLPVILAVEFLSIAFVES 156
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R G DP YPGG F+PLG KD K++K+KE
Sbjct: 157 QR----------------------NGEPDPEKRKYPGG-AFDPLGFSKDPAKFKEYKVKE 193
Query: 228 VKNGRLAMLAILGYFVQGLVT-GVGPYQNLLDHLADPVNNNV 268
+KNGRLA+LA +G+ VQ G GP +NL HL+DP + N+
Sbjct: 194 IKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHKNI 235
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 100/222 (45%), Gaps = 47/222 (21%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + +LDGS PGD+GFDPL L PE + E E+I+ R+AML G
Sbjct: 50 WMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKE------SELIHCRWAMLAVPGV 103
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + A W P Y P + +E + F E
Sbjct: 104 LIPEALGLGNWV---EAQKWAAI----PGNQATYLGAPVPWGYLPVILAVEFLSIAFVES 156
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R G DP YPGG F+PLG KD K++K+KE
Sbjct: 157 QR----------------------NGEPDPEKRKYPGG-AFDPLGFSKDPAKFKEYKVKE 193
Query: 228 VKNGRLAMLAILGYFVQGLVT-GVGPYQNLLDHLADPVNNNV 268
+KNGRLA+LA +G+ VQ G GP +NL HL+DP + N+
Sbjct: 194 IKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHKNI 235
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 124/284 (43%), Gaps = 69/284 (24%)
Query: 2 ATQALVSSSLTSSVET-ARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQG----ADRP 56
A AL+++ L S ++ A + QS G S +GS ++ +G +R
Sbjct: 99 ALTALITTILYKSKQSIALAATASTRGQSTRGVSTRGSTRGQSTRGQRSTRGNAPEEERL 158
Query: 57 LWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
+WF + +L G PGD GFDPLGLS DP + + + EV +GR AMLG VG
Sbjct: 159 VWFPNATPPDHLTGEFPGDRGFDPLGLSTDP------VVFERMRISEVFHGRLAMLGIVG 212
Query: 116 AIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQD 175
I PE+ G WF L GF R
Sbjct: 213 CIVPELFFSQG--------PWFD-------------------------LSGFNLTRL--- 236
Query: 176 WANPGSMGRQYFLGFEKYLGGSG---------DPAYPGGPLFNPLGLGKDEKSMKDFKLK 226
G + Q E + G G D +YPG F+PL L DE KLK
Sbjct: 237 ----GLVALQVIAPLEYWRGNRGFSWNGDDGPDQSYPG---FDPLRLTDDET-----KLK 284
Query: 227 EVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
E+KNGRLAM A+LG VQ +TG P NL +HL++P + N+LT
Sbjct: 285 EIKNGRLAMTAMLGLEVQSHITGKSPLVNLSEHLSNPASVNILT 328
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 100/217 (46%), Gaps = 47/217 (21%)
Query: 57 LWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
LWF + + ++L G P D GFDPL L+ DP+ + EV +GR AML VG
Sbjct: 536 LWFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYAR------MRVAEVFHGRLAMLCMVG 589
Query: 116 AIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQD 175
I PE+LGK AWF+ G D L + MA+ E+ R Q
Sbjct: 590 CIVPELLGKG---------AWFEAGDS---------VDGLKLGFITMAIAAPTEYWRGQG 631
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
GF + G D +YPG F+PL L D + EVKNGRLA+
Sbjct: 632 -------------GF-NWQKGELDRSYPG---FDPLNLTTDYT-----RAAEVKNGRLAL 669
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
A+ G Q L TG P NL HLA+P+ N+ T+L
Sbjct: 670 TAVAGLTAQYLATGESPLANLSAHLANPIGANITTNL 706
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 108/237 (45%), Gaps = 50/237 (21%)
Query: 37 GSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEP 95
GS + AAS ++ +RPLWF + + S+L+G GD GFDP GL +DP+
Sbjct: 331 GSVAMFAASGRKSQKSDERPLWFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTF------ 384
Query: 96 KWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY 155
+ + EV +GR AML VGA+ P+ LGK W++ G
Sbjct: 385 ERMRIAEVYHGRLAMLAVVGALVPDYLGKG---------IWYEAAQNAGIGLKE------ 429
Query: 156 TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK 215
+ + A F R ++ ++P ++ YPG F+PL L
Sbjct: 430 -VAIFTAAYGVFEVARGVKENSDPTTI-------------------YPG---FDPLNLTT 466
Query: 216 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
D K E+KNGRLA+ A+LG+ VQ V G P NL +HL P+ N+ S+
Sbjct: 467 DYT-----KEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADSI 518
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 105/221 (47%), Gaps = 46/221 (20%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
+R LWF + YL G GD GFDP GL+ DP + + + EV + R +ML
Sbjct: 717 ERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADP------VTFERMQVAEVFHCRLSMLA 770
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
VG + PE+LG AWFQ I +N +A V+ + ++ E+ R
Sbjct: 771 LVGCLVPELLGNG---------AWFQ---IWDKVDFNRFA------VVALQVVAPLEYWR 812
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 232
G FL ++ + D +YPG F+PL L + K E+KNGR
Sbjct: 813 ----------GNGGFLWNDEE---TVDQSYPG---FDPLNLTTEYT-----KEAEIKNGR 851
Query: 233 LAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
LAM+ + G VQ VTG P NL+DHL+ P+ N+ T+L
Sbjct: 852 LAMIGMFGLEVQSHVTGKSPITNLIDHLSHPLTANIGTNLS 892
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 69/161 (42%), Gaps = 42/161 (26%)
Query: 57 LWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
LWF + + ++L G P D GFDPL L +DP+ + EV +GR AML VG
Sbjct: 910 LWFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYAR------MRVAEVFHGRLAMLCMVG 963
Query: 116 AIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQD 175
I PE+LGK AWF+ G D L + MA+ E+ R Q
Sbjct: 964 CIVPELLGKG---------AWFEAGDS---------VDGLKLGFITMAIAAPTEYWRGQG 1005
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKD 216
GF + G D +YPG F+PL L D
Sbjct: 1006 -------------GF-NWQKGELDRSYPG---FDPLNLTTD 1029
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 36/181 (19%)
Query: 68 LDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVG-AIAPEILGKAG 126
+D S PG FDPL L+ ++ E+ NGR AM+G G + + GK+
Sbjct: 825 VDQSYPG---FDPLNLTT----------EYTKEAEIKNGRLAMIGMFGLEVQSHVTGKS- 870
Query: 127 LIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQY 186
P ++ + P T + + + F A+ G +
Sbjct: 871 ----------------PITNLIDHLSHPLTANIGTNLSQPWPQVAMF---ASSGHKDGLW 911
Query: 187 FLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 246
F E +G+ YP F+PL L D ++ EV +GRLAML ++G V L
Sbjct: 912 FPNAEPPAHLTGE--YPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPEL 969
Query: 247 V 247
+
Sbjct: 970 L 970
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 42/194 (21%)
Query: 68 LDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGL 127
LD S PG FDPL L+ + EV NGR A+ AGL
Sbjct: 640 LDRSYPG---FDPLNLTT----------DYTRAAEVKNGRLALTAV-----------AGL 675
Query: 128 IPQETALAWFQTGVIPPAGTYNYWADPY-TLFVLEMALMGFAEHRRFQDWANPGSMGRQY 186
Q + TG P A + A+P +A+ + + ++ P + +Y
Sbjct: 676 TAQ-----YLATGESPLANLSAHLANPIGANITTNLAMFASSGAKEERELWFPNIVPPRY 730
Query: 187 FLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 246
G E Y GD F+P GL D + + ++ EV + RL+MLA++G V L
Sbjct: 731 LTG-EAY----GDKG------FDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPEL 779
Query: 247 VTGVGPYQNLLDHL 260
+ G G + + D +
Sbjct: 780 L-GNGAWFQIWDKV 792
>gi|297744047|emb|CBI37017.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 102/208 (49%), Gaps = 69/208 (33%)
Query: 61 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + P
Sbjct: 32 SGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFP 85
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
E+L + G+ E WF+ + WA ++ LMG E R
Sbjct: 86 ELLSRNGVKFGEAV--WFKAAI---------WA-------CQVILMGAVEGYR------- 120
Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
+GG PLG ++KE+KNGRLAM ++
Sbjct: 121 --------------IGGG------------PLG-----------EVKEIKNGRLAMFSMF 143
Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNN 267
G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 144 GFFVQAIVTGKGPLENLADHLADPVNNN 171
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 100/205 (48%), Gaps = 47/205 (22%)
Query: 74 GDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQET 132
GD+GFDPLGL + PE + E E+I+ R+AML G + PE LG +
Sbjct: 1 GDFGFDPLGLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGFGNWV---K 51
Query: 133 ALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEHRRFQDWANPGSMGRQY 186
A W P G Y +P T+ V+E + F EH+R SM +
Sbjct: 52 AQEWAAV----PGGQATYLGNPVPWGTLPTILVIEFLAIAFVEHQR--------SMEK-- 97
Query: 187 FLGFEKYLGGSGDPA---YPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV 243
DP YPGG F+PLG KD K ++ K+KE+KNGRLA+LA +G+ V
Sbjct: 98 ------------DPEKRKYPGG-AFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCV 144
Query: 244 -QGLVTGVGPYQNLLDHLADPVNNN 267
Q G GP +NL HLADP +N
Sbjct: 145 QQSAYPGTGPLENLATHLADPWHNK 169
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 101/222 (45%), Gaps = 47/222 (21%)
Query: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGA 116
W + +LDGS PGD+GFDPL L PE + E E+I+ R+AML G
Sbjct: 10 WMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKE------SELIHCRWAMLAVPGM 63
Query: 117 IAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY------TLFVLEMALMGFAEH 170
+ PE LG + A W P Y+ P + +E + F E
Sbjct: 64 LIPEALGLGNWV---EAQKWAAI----PGSQATYFGVPVPWGYLPIVLAVEFLAIAFVES 116
Query: 171 RRFQDWANPGSMGRQYFLGFEKYLGGSGDP---AYPGGPLFNPLGLGKDEKSMKDFKLKE 227
+R G DP YPGG F+PLG KD K++K+KE
Sbjct: 117 QR----------------------NGEPDPEKRKYPGG-AFDPLGFSKDPVKFKEYKVKE 153
Query: 228 VKNGRLAMLAILGYFVQGLVT-GVGPYQNLLDHLADPVNNNV 268
+KNGRLA+LA +G+ VQ G GP +NL HL+DP + N+
Sbjct: 154 IKNGRLALLAFVGFCVQASANPGTGPLENLATHLSDPWHRNI 195
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 101/189 (53%), Gaps = 35/189 (18%)
Query: 66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L +
Sbjct: 11 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAR 64
Query: 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQD 175
G+ E WF+ G I G +Y +P ++ +++ LMG E R
Sbjct: 65 NGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA- 121
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
P LG DP YPGG F+PLGL D ++ + K+KE+KNGRLAM
Sbjct: 122 -GGP--------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAM 165
Query: 236 LAILGYFVQ 244
++ G+FVQ
Sbjct: 166 FSMFGFFVQ 174
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 127/276 (46%), Gaps = 53/276 (19%)
Query: 2 ATQALVSSSLTSSVET-ARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA----DRP 56
A AL+++ L S ++ A + QS G S +GS ++ +G+ +R
Sbjct: 99 ALTALITTILYKSKQSIALAATASTRGQSTRGVSTRGSTRGQSTRGQRSTRGSAPEEERL 158
Query: 57 LWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
+WF + +L G PGD GFDPLGLS DP + + + EV +GR AMLG VG
Sbjct: 159 VWFPNATPPDHLTGEFPGDRGFDPLGLSKDP------VVFERMRISEVFHGRLAMLGIVG 212
Query: 116 AIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQD 175
I PE+ G W D + + + L+ +
Sbjct: 213 CIVPELFFSQG-----------------------PWFDLSSFNLTRLGLVALQVIAPLEY 249
Query: 176 WANPGSMGRQYFLGFEKYLGGSG-DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLA 234
W G + F + G G D +YPG F+PL L +E KLKE+KNGRLA
Sbjct: 250 W-----RGNRGF----SWNGDDGPDQSYPG---FDPLRLTDEET-----KLKEIKNGRLA 292
Query: 235 MLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
M A+LG VQ +TG P NL +HL++P + N+LT
Sbjct: 293 MTAMLGLEVQSHITGKSPLVNLSEHLSNPASVNILT 328
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 104/231 (45%), Gaps = 51/231 (22%)
Query: 47 PPV----KQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYG 101
PPV G LWF + + ++L G P D GFDPL L+ DP+ +
Sbjct: 896 PPVAMFASSGHKDGLWFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYAR------MRVA 949
Query: 102 EVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLE 161
EV +GR AML VG I PE+LGK AWF+ G D L +
Sbjct: 950 EVFHGRLAMLCMVGCIVPELLGKG---------AWFEAGDS---------VDGLKLGFIT 991
Query: 162 MALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMK 221
MA+ E+ R Q GF + G D +YPG F+PL L D
Sbjct: 992 MAIAAPTEYWRGQG-------------GF-NWQKGDLDRSYPG---FDPLNLTTDYT--- 1031
Query: 222 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
+ EVKNGRLA+ A+ G Q L TG P NL HLA+P+ N+ T+L
Sbjct: 1032 --RAAEVKNGRLALTAVAGLTAQYLATGESPLANLTAHLANPLGANITTNL 1080
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 100/217 (46%), Gaps = 47/217 (21%)
Query: 57 LWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVG 115
LWF + + ++L G P D GFDPL L+ DP+ + EV +GR AML VG
Sbjct: 536 LWFPNAEPPAHLTGEYPADRGFDPLNLAADPDVYAR------MRVAEVFHGRLAMLCMVG 589
Query: 116 AIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQD 175
I PE+LGK AWF+ G D L + MA+ E+ R Q
Sbjct: 590 CIVPELLGKG---------AWFEAGDS---------VDGLKLGFITMAIAAPTEYWRGQG 631
Query: 176 WANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAM 235
GF + G D +YPG F+PL L D + EVKNGRLA+
Sbjct: 632 -------------GF-NWQKGDLDRSYPG---FDPLNLTTDYT-----RAAEVKNGRLAL 669
Query: 236 LAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
A+ G Q L TG P NL HLA+P+ N+ T+L
Sbjct: 670 TAVAGLTAQYLATGESPLANLSAHLANPIGANIATNL 706
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 107/237 (45%), Gaps = 50/237 (21%)
Query: 37 GSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEP 95
GS + A S ++ +RPLWF + + S+L G GD GFDP GL +DP+
Sbjct: 331 GSVAMFAGSGRKSQKSDERPLWFPNTLAPSWLTGEYYGDRGFDPAGLAADPDTF------ 384
Query: 96 KWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY 155
+ + EV +GR AML VGA+ P+ LGK W++ G
Sbjct: 385 ERMRIAEVYHGRLAMLAIVGALVPDYLGKG---------IWYEAAQNAGIGLKE------ 429
Query: 156 TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGK 215
+ + A F R ++ ++P ++ YPG F+PL L
Sbjct: 430 -VAIFTAAYGVFEVARGVKENSDPTTI-------------------YPG---FDPLNLTT 466
Query: 216 DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272
D K E+KNGRLA+ A+LG+ VQ V G P NL DHL P+ +N+ S+
Sbjct: 467 DYT-----KEAEIKNGRLALTALLGFEVQRHVVGGSPLANLADHLQQPLQHNIADSI 518
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 105/221 (47%), Gaps = 46/221 (20%)
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLG 112
+R LWF + YL G GD GFDP GL+ DP + + + EV + R +ML
Sbjct: 717 ERELWFPNIVPPRYLTGEAYGDKGFDPAGLAADP------VTFERMQVAEVFHCRLSMLA 770
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRR 172
VG + PE+LG AWFQ I +N +A V+ + ++ E+ R
Sbjct: 771 LVGCLVPELLGNG---------AWFQ---IWDKVDFNRFA------VVALQVVAPLEYWR 812
Query: 173 FQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGR 232
G FL ++ + D +YPG F+PL L + K E+KNGR
Sbjct: 813 ----------GNGGFLWNDEE---TIDQSYPG---FDPLNLTTEYT-----KEAEIKNGR 851
Query: 233 LAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273
LAM+ + G VQ VTG P NL+DHL+ P+ N+ T+L
Sbjct: 852 LAMIGMFGLEVQSHVTGKSPITNLIDHLSHPLTANIGTNLS 892
>gi|357163903|ref|XP_003579885.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Brachypodium distachyon]
Length = 256
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 106/196 (54%), Gaps = 38/196 (19%)
Query: 66 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124
S+LDGSLPGD+GFDPLGL DP F+ KW E+I+GR+AM +G +G+
Sbjct: 69 SWLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGI----FVGQ 118
Query: 125 AGLIPQETALAWFQTGVIPPAGTYNYWADPY---TLFVLEMALMGFAEHRRFQDWANPGS 181
A + + WF+ G P A P+ +L ++ LMG+ E +R+ D+ NP S
Sbjct: 119 A-----YSGVPWFEAGAQPGA------VAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDS 167
Query: 182 MGRQYFLGFEK----YLGGSGDPAYPGGPLFNPLGLGKDEKS---------MKDFKLKEV 228
++ + + + +GD YPGG F+PLGLG D K ++ KL E+
Sbjct: 168 QAVEWATPWSRTADNFANSTGDQGYPGGKFFDPLGLGGDTKDGVYIPDTDKLERLKLAEI 227
Query: 229 KNGRLAMLAILGYFVQ 244
K+ RLAMLA+L ++ +
Sbjct: 228 KHARLAMLAMLIFYFE 243
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
D + PG F+PLGLGKD +K ++ E+ +GR AM A+LG FV +GV
Sbjct: 72 DGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAYSGV 123
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 107/218 (49%), Gaps = 38/218 (17%)
Query: 40 VVRAASTPP--VKQGADRP--LWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIE 94
V+ AS+ P V G DRP L + S ++ +YL G GDYG+D GLS DPE + E
Sbjct: 30 TVKGASSAPDSVWYGPDRPKYLGWLSGETPAYLTGEFAGDYGWDTAGLSADPETFKRYRE 89
Query: 95 PKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWAD 153
E+I+ R+AMLGA+G I PE+L G E WF+ G I G NY +
Sbjct: 90 L------ELIHARWAMLGALGCITPELLANNGTPIAEPV--WFKAGAQIFQDGGLNYLGN 141
Query: 154 P--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGG 205
++++ LMG E R N G G D YPGG
Sbjct: 142 ENLVHAQSIIVTLLVQVILMGTVEGYR----VNGGPAGEGL------------DKLYPGG 185
Query: 206 PLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFV 243
F+PLGL D + + K+KE+KNGRLAM ++ G+FV
Sbjct: 186 DFFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV 223
>gi|47026929|gb|AAT08685.1| chloroplast chlorophyll a/b-binding protein [Hyacinthus orientalis]
Length = 156
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 88/163 (53%), Gaps = 28/163 (17%)
Query: 114 VGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMAL 164
+G + PE+L + G+ E WF+ G I G +Y +P ++ ++ L
Sbjct: 1 LGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLL 58
Query: 165 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFK 224
MG E R G +G DP YPGG F+PLGL D ++ + K
Sbjct: 59 MGAVEGYRVAG----GPLGEVV------------DPLYPGGS-FDPLGLADDPEAFAELK 101
Query: 225 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 267
+KE+KNGRLAML++ G+FVQ +VTG GP +NL DHLADPVNNN
Sbjct: 102 VKEIKNGRLAMLSMFGFFVQAIVTGKGPLENLADHLADPVNNN 144
>gi|297850008|ref|XP_002892885.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
gi|297338727|gb|EFH69144.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 133/268 (49%), Gaps = 49/268 (18%)
Query: 1 MATQALVSSSLTSSVETARQILGARSAQS-----PTGSSRKG--SFVVRAASTPPVKQGA 53
MA V S L SS T G RS+ + TG+ R G + +V AA+ P K
Sbjct: 1 MAVSGAVLSGLGSSFLTG----GKRSSTALGNGVGTGAQRVGRKTLIVVAAAAQPKKSWI 56
Query: 54 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLG 112
+ +LDGSLPGDYGFDPLGL DP F+ KW E+I+GR+AM
Sbjct: 57 PAVKGGGNFLDPEWLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAA 110
Query: 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY---TLFVLEMALMGFAE 169
+G +G+A + + WF+ G P A P+ +L ++ LMG+ E
Sbjct: 111 VLGI----FVGQA-----WSGVPWFEAGAQPEA------IAPFSFGSLLGTQLLLMGWVE 155
Query: 170 HRRFQDWANPGSMGRQYFLGF----EKYLGGSGDPAYPGGPLFNPLGL-GK--------D 216
+R+ D+ NP S ++ + E + +GD YPGG F+PLGL GK D
Sbjct: 156 SKRWVDFFNPDSQSVEWATPWSRTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPD 215
Query: 217 EKSMKDFKLKEVKNGRLAMLAILGYFVQ 244
+ ++ KL E+K+ RLAMLA+L ++ +
Sbjct: 216 VEKLERLKLAEIKHSRLAMLAMLIFYFE 243
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
D + PG F+PLGLGKD +K ++ E+ +GR AM A+LG FV +GV
Sbjct: 72 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGV 123
>gi|224070503|ref|XP_002303160.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118487218|gb|ABK95437.1| unknown [Populus trichocarpa]
gi|118489807|gb|ABK96703.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222840592|gb|EEE78139.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 129/261 (49%), Gaps = 51/261 (19%)
Query: 7 VSSSLTSSVETARQI--LGARSAQSPTGSSRKGSFVVRA----ASTPPVKQGADRPLWFA 60
+ SS + +R + +GA S + +RK + V A + P VK G F
Sbjct: 12 LGSSFLCGGKRSRALSGIGATGIGSCSVGARKLTIVAAAQPKKSWIPAVKGGGS----FV 67
Query: 61 SKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
+ +LDGSLPGDYGFDPLGL DP F+ KW E+I+GR+AM VG
Sbjct: 68 DPE---WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI--- 115
Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPY---TLFVLEMALMGFAEHRRFQDW 176
+G+A + + WF+ G P A P+ +L ++ LMG+ E +R+ D+
Sbjct: 116 -FVGQA-----WSGIPWFEAGADPGA------IAPFSFGSLLGTQLILMGWVESKRWVDF 163
Query: 177 ANPGSMGRQYFLGF----EKYLGGSGDPAYPGGPLFNPLGLG---------KDEKSMKDF 223
NP S ++ + E + +GD YPGG F+PLG DE+ ++
Sbjct: 164 FNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGTLKNGVYIPDEEKLERL 223
Query: 224 KLKEVKNGRLAMLAILGYFVQ 244
KL E+K+ RLAM+A+L ++ +
Sbjct: 224 KLAEIKHARLAMIAMLIFYFE 244
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250
D + PG F+PLGLGKD +K ++ E+ +GR AM A++G FV +G+
Sbjct: 73 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 124
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,982,920,700
Number of Sequences: 23463169
Number of extensions: 243874203
Number of successful extensions: 541450
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 326
Number of HSP's that attempted gapping in prelim test: 533525
Number of HSP's gapped (non-prelim): 3141
length of query: 275
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 135
effective length of database: 9,074,351,707
effective search space: 1225037480445
effective search space used: 1225037480445
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)