Query 023899
Match_columns 275
No_of_seqs 232 out of 1243
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:27:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00048 photosystem I light h 100.0 6.7E-74 1.5E-78 524.2 16.0 243 33-275 20-262 (262)
2 PLN00097 photosystem I light h 100.0 1.5E-64 3.2E-69 457.6 14.4 201 53-269 42-243 (244)
3 PLN00098 light-harvesting comp 100.0 1.2E-64 2.7E-69 463.6 14.0 209 50-275 57-267 (267)
4 PLN00101 Photosystem I light-h 100.0 2E-64 4.3E-69 458.5 13.1 204 48-273 46-250 (250)
5 PLN00187 photosystem II light- 100.0 2.6E-62 5.6E-67 451.4 13.3 198 48-273 45-285 (286)
6 PLN00147 light-harvesting comp 100.0 9.4E-62 2E-66 441.8 12.9 211 50-275 40-252 (252)
7 PLN00025 photosystem II light 100.0 2E-61 4.3E-66 441.5 12.3 200 48-272 44-255 (262)
8 PLN00171 photosystem light-ha 100.0 1.1E-60 2.4E-65 445.4 8.0 253 4-273 50-323 (324)
9 PLN00099 light-harvesting comp 100.0 4.5E-58 9.7E-63 416.0 13.1 188 53-274 42-238 (243)
10 PLN00100 light-harvesting comp 100.0 3E-57 6.5E-62 409.9 11.1 177 52-272 32-209 (246)
11 PLN00170 photosystem II light- 100.0 1.5E-52 3.2E-57 381.3 11.9 184 53-257 49-254 (255)
12 PF00504 Chloroa_b-bind: Chlor 100.0 8E-42 1.7E-46 290.2 9.1 155 64-246 1-156 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 2.1E-40 4.5E-45 295.3 7.1 158 65-253 47-207 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 6E-35 1.3E-39 259.2 6.2 148 78-253 47-198 (202)
15 PLN00098 light-harvesting comp 99.6 2.4E-16 5.3E-21 145.2 4.4 68 199-266 76-150 (267)
16 PLN00101 Photosystem I light-h 99.6 6.9E-16 1.5E-20 141.1 4.6 55 199-253 67-121 (250)
17 PLN00170 photosystem II light- 99.6 1.5E-15 3.2E-20 139.1 5.6 76 169-253 50-125 (255)
18 PLN00147 light-harvesting comp 99.5 3.3E-15 7.2E-20 136.8 4.4 53 199-251 59-111 (252)
19 PLN00171 photosystem light-ha 99.5 1.3E-14 2.9E-19 136.4 4.3 54 199-252 124-177 (324)
20 PLN00097 photosystem I light h 99.5 1.5E-14 3.4E-19 131.8 4.4 54 199-252 58-111 (244)
21 PLN00025 photosystem II light 99.5 2.4E-14 5.1E-19 131.8 4.3 53 199-251 67-119 (262)
22 PLN00100 light-harvesting comp 99.5 3.5E-14 7.5E-19 129.5 4.2 50 199-248 49-98 (246)
23 PLN00099 light-harvesting comp 99.4 1.2E-13 2.6E-18 126.1 4.0 51 199-249 58-108 (243)
24 PLN00048 photosystem I light h 99.4 1.3E-13 2.8E-18 127.1 4.1 56 199-255 56-117 (262)
25 PLN00187 photosystem II light- 99.4 1.4E-13 3E-18 128.0 3.8 52 199-250 66-160 (286)
26 PLN00089 fucoxanthin-chlorophy 99.3 6.9E-13 1.5E-17 118.8 4.5 48 203-250 54-102 (209)
27 PF00504 Chloroa_b-bind: Chlor 99.3 1.1E-12 2.4E-17 111.4 4.2 50 200-250 7-56 (156)
28 PLN00120 fucoxanthin-chlorophy 99.0 1.3E-10 2.8E-15 103.8 2.5 44 202-246 42-87 (202)
29 PLN00084 photosystem II subuni 98.0 2.9E-06 6.3E-11 73.9 2.6 47 218-264 130-177 (214)
30 PHA02337 putative high light i 98.0 3E-06 6.4E-11 55.5 2.0 28 225-252 4-31 (35)
31 PLN00014 light-harvesting-like 97.5 6.6E-05 1.4E-09 68.2 2.5 37 223-259 159-195 (250)
32 PHA02337 putative high light i 97.4 4.9E-05 1.1E-09 49.8 0.3 28 99-126 3-30 (35)
33 PLN00014 light-harvesting-like 96.0 0.0011 2.4E-08 60.4 -1.2 31 99-129 160-190 (250)
34 PLN00084 photosystem II subuni 94.2 0.01 2.2E-07 52.1 -0.6 37 94-130 131-168 (214)
35 KOG0593 Predicted protein kina 48.2 9.3 0.0002 37.2 1.3 57 73-131 142-205 (396)
36 PLN02449 ferrochelatase 44.3 14 0.0003 37.6 1.9 21 233-253 463-483 (485)
37 KOG0659 Cdk activating kinase 41.5 16 0.00034 35.0 1.6 38 94-132 163-206 (318)
38 PHA00003 B internal scaffoldin 24.4 71 0.0015 26.3 2.6 41 198-241 40-80 (120)
No 1
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=6.7e-74 Score=524.15 Aligned_cols=243 Identities=86% Similarity=1.465 Sum_probs=225.9
Q ss_pred cCccccceeeecCCCCcccCCCCCccccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccceeeeh
Q 023899 33 SSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLG 112 (275)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~l~G~~pGd~GfDPlGl~~~~~~~~~~~~~~~r~aElkHGR~AMLA 112 (275)
++++++|++|+++.++++++++|++|+++.++|+||||++|||||||||||+|++..+++.+.+|+|++||+||||||||
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~r~~w~p~~~~P~yLdG~lPGD~GFDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa 99 (262)
T PLN00048 20 SAKKARFVVRAEATPPAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLG 99 (262)
T ss_pred cccccceeEecccCCCCCCCCCCceecCCCCCccccCCCCCCccCCCccccCCccccccchhHHHHHHHHhhcchHHHHH
Confidence 44566899999988888889999999999999999999999999999999998876666678899999999999999999
Q ss_pred hhhhhhhhhhccCCCCCccchhhhhccCccCCCCccccccchhHHHHHHHHHHHHHhhhhhccccCCCCCCccccccccc
Q 023899 113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK 192 (275)
Q Consensus 113 ~~G~~~~e~l~~~g~~~~~~~~~w~~ag~vp~~g~~~~~~~~~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~ 192 (275)
++||++||++++.|+++..+...|+++|++++.+.++||.++.+++++|+++||++|.+|++++++||+++.+.+.++++
T Consensus 100 ~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~ 179 (262)
T PLN00048 100 AAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEK 179 (262)
T ss_pred HhhHHHHHHhccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccCCCcccccccccchh
Confidence 99999999999888887655567999999988888899999999999999999999999999999999999988888888
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccchhhHHhhhcCCccchhhccc
Q 023899 193 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272 (275)
Q Consensus 193 ~~~g~~d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL~~hl~dP~~~n~~~~~ 272 (275)
.+.+++|+.||||++||||||.+|+|+++++|++|||||||||+|++||++|+++||++|++||.+||+||+||||++|+
T Consensus 180 ~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~ 259 (262)
T PLN00048 180 GLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNL 259 (262)
T ss_pred ccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccc
Confidence 88877788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 023899 273 KFH 275 (275)
Q Consensus 273 ~~~ 275 (275)
+.|
T Consensus 260 ~~~ 262 (262)
T PLN00048 260 KFH 262 (262)
T ss_pred ccC
Confidence 765
No 2
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=1.5e-64 Score=457.65 Aligned_cols=201 Identities=47% Similarity=0.838 Sum_probs=179.5
Q ss_pred CCCCccccCcccccccCCCCCCCCCCCCCCCC-CCCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCCCCCcc
Q 023899 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQE 131 (275)
Q Consensus 53 ~~r~~~~~~~~~p~~l~G~~pGd~GfDPlGl~-~~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~~~~~ 131 (275)
++|++|+|+.++|+||||++|||||||||||+ |++ +++|||++||+||||||||++||++||+++..|+...
T Consensus 42 ~~R~~w~Pg~~~P~~LdG~~pGD~GfDPlGl~~~~~------~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~- 114 (244)
T PLN00097 42 ADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPE------MLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADL- 114 (244)
T ss_pred CCCcccCCCCCCccccCCCCCCCCCCCccccCcCHH------HHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccC-
Confidence 58999999999999999999999999999996 454 7899999999999999999999999999988776431
Q ss_pred chhhhhccCccCCCCccccccchhHHHHHHHHHHHHHhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCCCCCC
Q 023899 132 TALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPL 211 (275)
Q Consensus 132 ~~~~w~~ag~vp~~g~~~~~~~~~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG~~~FDPL 211 (275)
..||++++. .+||.+..+++++|+++||++|.+|++++++||+++.+++++.++.. ..+|..|||+. ||||
T Consensus 115 --p~W~~Ag~~-----~~~~~~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~-~~~d~gYPgg~-FDPl 185 (244)
T PLN00097 115 --PNWIDAAKW-----DGYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGD-TNTDVGYPKGL-FDKF 185 (244)
T ss_pred --CccccCCcc-----hhccccchhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCC-cccccCCCCCC-CCcc
Confidence 269997643 13777777899999999999999999999999999888877665532 23577899996 9999
Q ss_pred CCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccchhhHHhhhcCCccchhh
Q 023899 212 GLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL 269 (275)
Q Consensus 212 gl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL~~hl~dP~~~n~~ 269 (275)
||.+|+++++++|+||||||||||+|++||++|+++||+||++||.+||+||+||||+
T Consensus 186 gl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 186 GWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred ccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 9999999999999999999999999999999999999999999999999999999997
No 3
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=1.2e-64 Score=463.60 Aligned_cols=209 Identities=45% Similarity=0.853 Sum_probs=182.4
Q ss_pred ccCCCCCccccCcccccccCCCCCCCCCCCCCCCC-CCCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCCCC
Q 023899 50 KQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLI 128 (275)
Q Consensus 50 ~~~~~r~~~~~~~~~p~~l~G~~pGd~GfDPlGl~-~~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~~ 128 (275)
.++++|++|+|+.++|+||||++|||||||||||+ |++ +++|||++|||||||||||++|+++||++++.|.+
T Consensus 57 ~~~~~r~~w~Pg~~~P~~LdG~~pGD~GFDPlgl~~~~~------~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~ 130 (267)
T PLN00098 57 PLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPE------LLKWFAQAELMHSRWAMLAVAGILIPECLERLGFI 130 (267)
T ss_pred cCCCCccccCCCCCCCccCCCCCCCCCCcCccccCCCHH------HHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcc
Confidence 35679999999999999999999999999999996 444 78999999999999999999999999999887765
Q ss_pred CccchhhhhccCccCCCCccccccchhHHHHHHHHHHHHHhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 023899 129 PQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLF 208 (275)
Q Consensus 129 ~~~~~~~w~~ag~vp~~g~~~~~~~~~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG~~~F 208 (275)
. .+.|+++|. .+|+.++.+++++|+++||++|.+||+++.+||.++.++.+.... ....|..||||++|
T Consensus 131 ~---~~~w~~Ag~------~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~--~~~~d~~yPGg~~F 199 (267)
T PLN00098 131 E---NFSWYDAGA------REYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKT--NPKPDVGYPGGLWF 199 (267)
T ss_pred c---ccccccccc------hhhccCchHHHHHHHHHHHHHHHHHhhcccCCccccccccccccc--cCCCCCCCCCCccC
Confidence 4 246988653 458888888889999999999999999998898876554332211 11236789999999
Q ss_pred CCCCCC-cchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccchhhHHhhhcCCccchhhccccCC
Q 023899 209 NPLGLG-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275 (275)
Q Consensus 209 DPLgl~-~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL~~hl~dP~~~n~~~~~~~~ 275 (275)
|||||. +|+|+++++|+||||||||||+|++||++|+.+||++|++||.+||+||+||||++++++|
T Consensus 200 DPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~~ 267 (267)
T PLN00098 200 DPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTSH 267 (267)
T ss_pred CcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccCC
Confidence 999997 5899999999999999999999999999999999999999999999999999999999875
No 4
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=2e-64 Score=458.54 Aligned_cols=204 Identities=47% Similarity=0.853 Sum_probs=177.3
Q ss_pred CcccCCCCCccccCcccccccCCCCCCCCCCCCCCCC-CCCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCC
Q 023899 48 PVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAG 126 (275)
Q Consensus 48 ~~~~~~~r~~~~~~~~~p~~l~G~~pGd~GfDPlGl~-~~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g 126 (275)
.+++..+|++|+|+.++|+||||++|||+|||||||+ |++ +++|+|++||+||||||||++|+++||+++..|
T Consensus 46 ~~~~~~~r~~W~P~~~~P~~LdG~~PGD~GFDPlGl~~d~~------~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g 119 (250)
T PLN00101 46 SFKVEAKKGEWLPGLASPGYLNGSLPGDNGFDPLGLAEDPE------NLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 119 (250)
T ss_pred cccccccccccCCCCCCCcccCCCCCCccCCCccccCCCHH------HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCC
Confidence 3445678999999999999999999999999999996 444 789999999999999999999999999999888
Q ss_pred CCCccchhhhhccCccCCCCccccccchhHHHHHHHHHHHHHhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCC
Q 023899 127 LIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGP 206 (275)
Q Consensus 127 ~~~~~~~~~w~~ag~vp~~g~~~~~~~~~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG~~ 206 (275)
.+.. ..|+++|+ ..|+..+.+++++|+++||++|.+|++++++||+++.++.+.... + ..+|..||||.
T Consensus 120 ~~~~---p~w~~ag~------~~~~~~~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~-~-~~gd~~YPGG~ 188 (250)
T PLN00101 120 IINA---PQWYDAGK------AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYS-L-PPNEVGYPGGI 188 (250)
T ss_pred CcCC---Cccccccc------hhhcccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccc-c-CCccccCCCCc
Confidence 7643 25998764 458888889999999999999999999999999987765432111 1 13578899996
Q ss_pred CCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccchhhHHhhhcCCccchhhcccc
Q 023899 207 LFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273 (275)
Q Consensus 207 ~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL~~hl~dP~~~n~~~~~~ 273 (275)
||||||+++ +++|+||||||||||+|++||++|+.+||+||++||.+||+||+||||++|+.
T Consensus 189 -FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~~ 250 (250)
T PLN00101 189 -FNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250 (250)
T ss_pred -cCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhcC
Confidence 999999865 38899999999999999999999999999999999999999999999999974
No 5
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=2.6e-62 Score=451.41 Aligned_cols=198 Identities=38% Similarity=0.725 Sum_probs=167.3
Q ss_pred CcccCCCCCccccCcccccccCCCCCCCCCCCCCCCC-CCCC------------------------------------CC
Q 023899 48 PVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEG------------------------------------TG 90 (275)
Q Consensus 48 ~~~~~~~r~~~~~~~~~p~~l~G~~pGd~GfDPlGl~-~~~~------------------------------------~~ 90 (275)
+.+++++|++|+|+.++|+||||++|||||||||||+ +|+. +.
T Consensus 45 ~~~~~~~r~~w~p~~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 124 (286)
T PLN00187 45 SSKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPY 124 (286)
T ss_pred ccCCCCCccccCCCCCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcc
Confidence 3456789999999999999999999999999999994 5542 11
Q ss_pred CCc-ccchhhhhhhhccceeeehhhhhhhhhhhccCCCCCccchhhhhccCccCCCCccccccch-----hHHHHHHHHH
Q 023899 91 GFI-EPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP-----YTLFVLEMAL 164 (275)
Q Consensus 91 ~~~-~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~~~~~~~~~w~~ag~vp~~g~~~~~~~~-----~~l~~~~~~~ 164 (275)
+++ .++||||+|||||||||||++||++||+++. +.|+++|.+.......|++.+ .+++++|+++
T Consensus 125 ~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~G---------~~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvll 195 (286)
T PLN00187 125 SEVFGLQRFRECELIHGRWAMLATLGALSVEALTG---------VTWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVLV 195 (286)
T ss_pred hhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhccC---------CcccccccccccccccccccccchhHHHHHHHHHHH
Confidence 111 3699999999999999999999999999842 259988875432223576654 4678899999
Q ss_pred HHHHhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhh
Q 023899 165 MGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQ 244 (275)
Q Consensus 165 ~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q 244 (275)
||++|.+|+.+.. ..++.||||++||||||.+|+|+++++|++|||||||||+|++||++|
T Consensus 196 mG~~E~~R~~~~~-------------------~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq 256 (286)
T PLN00187 196 IGYIEFQRNAELD-------------------PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQ 256 (286)
T ss_pred HHHHHhhhccCCC-------------------CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999975410 135679999889999999999999999999999999999999999999
Q ss_pred hhcccccchhhHHhhhcCCccchhhcccc
Q 023899 245 GLVTGVGPYQNLLDHLADPVNNNVLTSLK 273 (275)
Q Consensus 245 ~~vTG~gP~~nL~~hl~dP~~~n~~~~~~ 273 (275)
+.+||+||++||.+||+||+||||+++|.
T Consensus 257 ~~vtg~GPi~nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 257 AAATGKGPLNNWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred HHhcCCChHHHHHHHhcCcccccHHHhcc
Confidence 99999999999999999999999999985
No 6
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=9.4e-62 Score=441.76 Aligned_cols=211 Identities=45% Similarity=0.911 Sum_probs=181.0
Q ss_pred ccCCCCCccccCcccccccCCCCCCCCCCCCCCCCC-CCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCCCC
Q 023899 50 KQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLI 128 (275)
Q Consensus 50 ~~~~~r~~~~~~~~~p~~l~G~~pGd~GfDPlGl~~-~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~~ 128 (275)
.++++|++|+|+.++|+||||++|||+|||||||++ ++ +++|||++|||||||||||++|+++||+++..|.+
T Consensus 40 ~~~~~R~~wlP~~~~P~~Ldg~~pGD~GFDPlgl~~d~~------~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~ 113 (252)
T PLN00147 40 VVAQERPTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPE------SLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR 113 (252)
T ss_pred cCCCCccccCCCCCCCCcCCCCCCCccCCCcccccCCHH------HHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCc
Confidence 446789999999999999999999999999999964 33 68999999999999999999999999999887764
Q ss_pred CccchhhhhccCccCCCCccccccchhHHHHHHHHHHHHHhhhhhccccCCCCCCcc-cccccccccCCCCCCCCCCCCC
Q 023899 129 PQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQ-YFLGFEKYLGGSGDPAYPGGPL 207 (275)
Q Consensus 129 ~~~~~~~w~~ag~vp~~g~~~~~~~~~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~-~~~g~~~~~~g~~d~~yPG~~~ 207 (275)
.. ..|++++... ++ |.++.+++++|+++||++|.+|+.++.+||+...+ .+++++..+.+ .++.||||++
T Consensus 114 ~~---p~w~~ag~~~----~~-~~~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~-~~~~yPGd~~ 184 (252)
T PLN00147 114 NL---PVWYEAGAVK----FE-FASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEG-LEPGYPGGPL 184 (252)
T ss_pred CC---cchhhcccch----hc-cccchHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccc-cCCCCccccc
Confidence 32 2588866321 12 34456778889999999999999999999987653 45555544443 3578999999
Q ss_pred CCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccchhhHHhhhcCCccchhhccccCC
Q 023899 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275 (275)
Q Consensus 208 FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL~~hl~dP~~~n~~~~~~~~ 275 (275)
||||||.+|+++++++|+||||||||||+|++||++|+++||+||++||.+||+||+||||++++++.
T Consensus 185 FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~~ 252 (252)
T PLN00147 185 FNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSHS 252 (252)
T ss_pred CCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998753
No 7
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=2e-61 Score=441.49 Aligned_cols=200 Identities=46% Similarity=0.843 Sum_probs=172.3
Q ss_pred CcccCCCCCccc-cC-cccccccCCCCCCCCCCCCCCCC-CCCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhcc
Q 023899 48 PVKQGADRPLWF-AS-KQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK 124 (275)
Q Consensus 48 ~~~~~~~r~~~~-~~-~~~p~~l~G~~pGd~GfDPlGl~-~~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~ 124 (275)
+.+++++|++|+ +. .++|+||||++|||||||||||+ |++ +++|||++|||||||||||++||+++|+++.
T Consensus 44 ~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~------~~~~~re~El~hGR~AMLa~~G~i~~e~l~~ 117 (262)
T PLN00025 44 SIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPE------TFARNRELEVIHARWAMLGALGCVTPELLAK 117 (262)
T ss_pred ccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHH------HHHHHHHHHHhccHHHHHHHhhhhhHHHhhc
Confidence 446899999999 43 46899999999999999999996 454 7899999999999999999999999999987
Q ss_pred CCCCCccchhhhhccCc-cCCCCccccccch--------hHHHHHHHHHHHHHhhhhhccccCCCCCCcccccccccccC
Q 023899 125 AGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG 195 (275)
Q Consensus 125 ~g~~~~~~~~~w~~ag~-vp~~g~~~~~~~~--------~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~ 195 (275)
.|+...+. .|+++|+ +.+.|.++|++++ .+++++|+++||++|.+|+.+. + ++
T Consensus 118 ~g~~~~~~--~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~--~--~~------------ 179 (262)
T PLN00025 118 NGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGG--P--LG------------ 179 (262)
T ss_pred CCcCcCcc--cccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCC--c--cc------------
Confidence 77644332 6999885 5667788898865 3567889999999999987651 1 11
Q ss_pred CCCCCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccchhhHHhhhcCCccchhhccc
Q 023899 196 GSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272 (275)
Q Consensus 196 g~~d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL~~hl~dP~~~n~~~~~ 272 (275)
...|+.||||+ ||||||.+|+|+++++|+||||||||||+|++||++|+++||+||++||.+||+||+||||+++.
T Consensus 180 ~~~d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~ 255 (262)
T PLN00025 180 EGLDPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYA 255 (262)
T ss_pred ccccCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhh
Confidence 11367899998 99999999999999999999999999999999999999999999999999999999999999864
No 8
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=1.1e-60 Score=445.38 Aligned_cols=253 Identities=37% Similarity=0.627 Sum_probs=192.4
Q ss_pred hhhhhccccchhHHHHHHhhccccCCCC-----CcCccccce-eee-cCCCCcccCCCCCccccCc--ccccccCCCCCC
Q 023899 4 QALVSSSLTSSVETARQILGARSAQSPT-----GSSRKGSFV-VRA-ASTPPVKQGADRPLWFASK--QSLSYLDGSLPG 74 (275)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~-~~~~~~~~~~~r~~~~~~~--~~p~~l~G~~pG 74 (275)
.++++.+++...+-+++.+|.+..+.-. ....++.+. .++ +...+.+++++|++|+++. ++|+||||++||
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpG 129 (324)
T PLN00171 50 LVFSAIPFTAVKAIANSSLGESLQRRLEETKKAAVEESSAFKAAAQKARNESFWYGEERPRWLGPIPYDYPDHLTGELPG 129 (324)
T ss_pred eeeecccHHHHHHHhcCcHHHHHHHHHHHhhHHHHHhHHHHHHHHHhhcccCcccCCCCccccCCCCCCCCcccCCCCCc
Confidence 3455567777777777777764211100 000011111 111 1224668999999999665 689999999999
Q ss_pred CCCCCCCCCCC-CCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCCCCCccchhhhhccCccCCC-Ccccccc
Q 023899 75 DYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWA 152 (275)
Q Consensus 75 d~GfDPlGl~~-~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~~~~~~~~~w~~ag~vp~~-g~~~~~~ 152 (275)
|||||||||++ ++ +++|||++|||||||||||++|+++||++++.|.+... ...|+++|..+.. ..++|++
T Consensus 130 D~GFDPLGL~~dp~------~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~~~~-~p~W~~aG~~~~~g~~~~y~~ 202 (324)
T PLN00171 130 DYGFDIAGLGKDPV------AFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHFA-EPVWWRVGYAKLQGDTLDYLG 202 (324)
T ss_pred ccCCCccccccCHH------HHHHHHHHHhccchHHHHHHhhHHHHHHhccCCccccC-ccchhhcccccccccchhhcc
Confidence 99999999964 44 78999999999999999999999999999877654221 2369998865432 2334543
Q ss_pred ch----------hHHHHHHHHHHHHHhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCcchhhhhh
Q 023899 153 DP----------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKD 222 (275)
Q Consensus 153 ~~----------~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG~~~FDPLgl~~d~e~~~~ 222 (275)
.+ .+++++|+++|+.+|.+|++++.+++..+. .. .+|..|||+.+||||||.+|++++++
T Consensus 203 ~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~--------~~--PGD~gYPGG~~FDPLGl~~d~~~~~~ 272 (324)
T PLN00171 203 IPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGI--------YL--PGDINYPGGALFDPLGLSKDPVAFED 272 (324)
T ss_pred CCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCccc--------cC--CCcccCCcccCCCccccCCCHHHHHH
Confidence 32 346788999999999999887654433221 11 25778999988999999999999999
Q ss_pred hhhhhhcchhhHHHHHhHHhhhhhcccccchhhHHhhhcCCccchhhcccc
Q 023899 223 FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 273 (275)
Q Consensus 223 ~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL~~hl~dP~~~n~~~~~~ 273 (275)
+|++|||||||||+||+||++|+.+||++|++||.+||+||+||||++++.
T Consensus 273 ~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~~ 323 (324)
T PLN00171 273 LKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLK 323 (324)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence 999999999999999999999999999999999999999999999999975
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=4.5e-58 Score=415.99 Aligned_cols=188 Identities=39% Similarity=0.707 Sum_probs=156.2
Q ss_pred CCCCccccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCCCCCccc
Q 023899 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQET 132 (275)
Q Consensus 53 ~~r~~~~~~~~~p~~l~G~~pGd~GfDPlGl~~~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~~~~~~ 132 (275)
++|..|+|+.++|+||||++|||+|||||||++..+ +++|||++|||||||||||++||++||+++..
T Consensus 42 ~~~~~w~P~~~~P~~Ldg~~pgd~GfDPlgls~~~~-----~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~------- 109 (243)
T PLN00099 42 TMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPE-----NLERYKESELIHCRWAMLAVPGILVPEALGLG------- 109 (243)
T ss_pred cccccccCCCCCCccCCCCCCcccCCCccccccCHH-----HHHHHHHHhccCCcHHHHHHhhHHHHHHhccC-------
Confidence 578899999999999999999999999999964321 68999999999999999999999999997641
Q ss_pred hhhhhccCcc--CCCCccccccc------hhHHHHHHHHHHHHHhhhhhccccCCCCCCcccccccccccCCCCCCCCCC
Q 023899 133 ALAWFQTGVI--PPAGTYNYWAD------PYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPG 204 (275)
Q Consensus 133 ~~~w~~ag~v--p~~g~~~~~~~------~~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG 204 (275)
.|++++.. -+.|...|+++ ..+++++|+++||++|.+|+... . ..+..|||
T Consensus 110 --~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~-~------------------~~~~~yPG 168 (243)
T PLN00099 110 --NWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-D------------------PEKKKYPG 168 (243)
T ss_pred --CcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccC-C------------------CCCCcCCC
Confidence 36655432 12333445433 24577889999999999875320 0 12357999
Q ss_pred CCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhh-hcccccchhhHHhhhcCCccchhhccccC
Q 023899 205 GPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQG-LVTGVGPYQNLLDHLADPVNNNVLTSLKF 274 (275)
Q Consensus 205 ~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~-~vTG~gP~~nL~~hl~dP~~~n~~~~~~~ 274 (275)
| .||||||.+|+++++++|+|||||||||||||+||++|+ .+||++|++||.+||+||+||||++.+..
T Consensus 169 d-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~~ 238 (243)
T PLN00099 169 G-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238 (243)
T ss_pred C-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeecc
Confidence 9 799999999999999999999999999999999999998 57999999999999999999999998743
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=3e-57 Score=409.91 Aligned_cols=177 Identities=37% Similarity=0.686 Sum_probs=152.0
Q ss_pred CCCCCccccCcccccccCCCCCCCCCCCCCCCCC-CCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCCCCCc
Q 023899 52 GADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQ 130 (275)
Q Consensus 52 ~~~r~~~~~~~~~p~~l~G~~pGd~GfDPlGl~~-~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~~~~ 130 (275)
.++|++|+|+.++|+||||++|||||||||||++ ++ +++|+|++|||||||||||++|+++||+++.+
T Consensus 32 ~~~r~~W~P~~~~P~~Ldg~~pGd~GFDPlgl~~~~~------~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~P----- 100 (246)
T PLN00100 32 ARARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPE------TLPYLQEAELMNGRWAMAATAGILFTDAVGLP----- 100 (246)
T ss_pred cCCCcccCCCCCCCCCCCCCCCCCcCCCccccCCCHH------HHHHHHHHHhhcchHHHHHHhhhhHHHHhccc-----
Confidence 4589999999999999999999999999999954 43 68999999999999999999999999997632
Q ss_pred cchhhhhccCccCCCCccccccchhHHHHHHHHHHHHHhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCCCCC
Q 023899 131 ETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNP 210 (275)
Q Consensus 131 ~~~~~w~~ag~vp~~g~~~~~~~~~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG~~~FDP 210 (275)
.|+++|.. .|+.+..+++++|+++||++|.+|+++++++| +.++||++.|||
T Consensus 101 ----~w~~ag~~------~~~~~~~~l~~iqill~g~~E~~r~~~~~~~g------------------~~~~pg~~~FDP 152 (246)
T PLN00100 101 ----KFWEAGAE------KYGLDLQTLVLIQVVVMAVLEAARYRGFMKTG------------------ESGVLSFFPFDP 152 (246)
T ss_pred ----chhhcchh------hhccchhHHHHHHHHHHHHHhhhccccccccc------------------ccCCCCCCCCCc
Confidence 37765532 23344556778899999999999988765432 234688888999
Q ss_pred CCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccchhhHHhhhcCCccchhhccc
Q 023899 211 LGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272 (275)
Q Consensus 211 Lgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL~~hl~dP~~~n~~~~~ 272 (275)
|||++ +++|+||||||||||+||+||++|+.+||++|++||.+|++||+||||+++.
T Consensus 153 LGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~ 209 (246)
T PLN00100 153 TGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSS 209 (246)
T ss_pred ccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCC
Confidence 99963 5799999999999999999999999999999999999999999999999874
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=1.5e-52 Score=381.30 Aligned_cols=184 Identities=37% Similarity=0.709 Sum_probs=153.6
Q ss_pred CCCCccccCcc------cccccCCCCCCCCCCCCCCCC-CCCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccC
Q 023899 53 ADRPLWFASKQ------SLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKA 125 (275)
Q Consensus 53 ~~r~~~~~~~~------~p~~l~G~~pGd~GfDPlGl~-~~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~ 125 (275)
+.|..|+++.. +|+||||++||||||||+||+ |++ +++|||++||+||||||||++||+++|+++.
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e------~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g- 121 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPA------FLKWYREAELIHGRWAMAAVVGIFVGQAWSG- 121 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHH------HHHHHHHHHhhccHHHHHHHHhhhhHHHccC-
Confidence 36789998764 699999999999999999995 444 6899999999999999999999999999853
Q ss_pred CCCCccchhhhhccCccCCCCcccccc--chhHHHHHHHHHHHHHhhhhhccccCCCCCCcccccccc----cccCCCCC
Q 023899 126 GLIPQETALAWFQTGVIPPAGTYNYWA--DPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE----KYLGGSGD 199 (275)
Q Consensus 126 g~~~~~~~~~w~~ag~vp~~g~~~~~~--~~~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~----~~~~g~~d 199 (275)
..|+++|+.+. ++. ...+|+++|+++||++|.+||+++++||++..+++.++. +.....++
T Consensus 122 --------~~w~~aG~~~~-----~~~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~ 188 (255)
T PLN00170 122 --------IPWFEAGADPG-----AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGL 188 (255)
T ss_pred --------CChhhCCcccc-----ccCccchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCC
Confidence 25999886532 121 135788999999999999999999999998777654432 11112346
Q ss_pred CCCCCCCCCCCCCCCc---------chhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccchhhHH
Q 023899 200 PAYPGGPLFNPLGLGK---------DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLL 257 (275)
Q Consensus 200 ~~yPG~~~FDPLgl~~---------d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL~ 257 (275)
..|||+..||||||.+ |+|+++++|+||||||||||+|++||++|+ .||++|++||.
T Consensus 189 ~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 189 QGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred cccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 7899998899999985 789999999999999999999999999999 79999999984
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=8e-42 Score=290.19 Aligned_cols=155 Identities=41% Similarity=0.631 Sum_probs=120.2
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCCCCC-ccchhhhhccCcc
Q 023899 64 SLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIP-QETALAWFQTGVI 142 (275)
Q Consensus 64 ~p~~l~G~~pGd~GfDPlGl~~~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~~~-~~~~~~w~~ag~v 142 (275)
+|++|||+++||+||||+||++.. +++|+|++||||||+||||++|++++|+++..+... ......|++++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~------~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~- 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP------DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG- 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH------HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS-
T ss_pred CcccccCCCCCCCCCChhhcccch------hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh-
Confidence 589999999999999999997543 689999999999999999999999999986543211 111123554321
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCcchhhhhh
Q 023899 143 PPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKD 222 (275)
Q Consensus 143 p~~g~~~~~~~~~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG~~~FDPLgl~~d~e~~~~ 222 (275)
.+ .+...+++++++||++|.++.++...++... ..+..||||++|||+|+.+|++++++
T Consensus 74 -----~~---~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~-------------~~~~~~pG~~~~dplgl~~~~~~~~~ 132 (156)
T PF00504_consen 74 -----IP---VPAAGWAQILLFIGALEPWRQQGVPEPGEGG-------------GKDGRYPGDLGFDPLGLAKDPEEKEF 132 (156)
T ss_dssp -----SS---SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTS-------------SSSSSSSSSSSSSTSSTSSSCHSHHC
T ss_pred -----hh---hhhHHHHHHHHHHhHhhhhhcccccCCcccc-------------cccccCccccccchhhhhhhhhhhHH
Confidence 11 2334555778999999999988754443221 13567999999999999999999999
Q ss_pred hhhhhhcchhhHHHHHhHHhhhhh
Q 023899 223 FKLKEVKNGRLAMLAILGYFVQGL 246 (275)
Q Consensus 223 ~k~kEIkNGRLAMlAi~G~~~Q~~ 246 (275)
+|++||||||||||||+|+++|+.
T Consensus 133 ~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 133 MQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999973
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=295.33 Aligned_cols=158 Identities=31% Similarity=0.390 Sum_probs=116.7
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCCCCCc-cchhhhhcc-Ccc
Q 023899 65 LSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQ-ETALAWFQT-GVI 142 (275)
Q Consensus 65 p~~l~G~~pGd~GfDPlGl~~~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~~~~-~~~~~w~~a-g~v 142 (275)
|..|||+ .||+|||||||++... .+++|+|++||||||+||||++|+++||+++.+|.+.. .....|+++ .++
T Consensus 47 ~p~l~g~-~Gd~~fDPlgl~~~~~----~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~~~~ 121 (209)
T PLN00089 47 EFMFIGK-TGSKKFDPLGLAEKVE----EFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDAL 121 (209)
T ss_pred CccccCC-CCccCcCCccCCCCCH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHHHhh
Confidence 4579999 9999999999975321 15789999999999999999999999999988875421 000112211 123
Q ss_pred CCCCccccccchhHHHHHHHHHHHHHhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCC-cchhhhh
Q 023899 143 PPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLG-KDEKSMK 221 (275)
Q Consensus 143 p~~g~~~~~~~~~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG~~~FDPLgl~-~d~e~~~ 221 (275)
|..|. +++++++||++|..... +.... .. .+.++|||++||||||. +|+++++
T Consensus 122 ~~~g~----------~~Qi~~~ig~~E~~~~~----~~~~~---------~~---~~~~~PGd~gfdplgl~~~d~~~~~ 175 (209)
T PLN00089 122 LKSGA----------MIQIFAWIGFVDLAVSA----PAAAA---------AA---EFDRTPGDFGFDLLALYPKDAAKME 175 (209)
T ss_pred ccccc----------HHHHHHHHHHHHHHHhh----ccccc---------cc---cCCCCCCCcCccccccCCCCHHHHH
Confidence 32221 23346789999964321 11110 00 12468999999999995 7899999
Q ss_pred hhhhhhhcchhhHHHHHhHHhhhhhcccccch
Q 023899 222 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 253 (275)
Q Consensus 222 ~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~ 253 (275)
++|++||||||||||||+|+++|+.+||++.+
T Consensus 176 ~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 176 KKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999875
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=6e-35 Score=259.19 Aligned_cols=148 Identities=29% Similarity=0.381 Sum_probs=99.8
Q ss_pred CCCCCCCCCCCCCCCcccchhhhhhhhccceeeehhhhhhhhhh-hccCCCCCccchhhhhccCccCCCCccccccchhH
Q 023899 78 FDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEI-LGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYT 156 (275)
Q Consensus 78 fDPlGl~~~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~-l~~~g~~~~~~~~~w~~ag~vp~~g~~~~~~~~~~ 156 (275)
|||+||++..+.+ +++|+|++|||||||||||++||+++|+ ++.+|.+.... ..+. .+|. +...+...+..
T Consensus 47 fDPlgl~~~~~~~---~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g--~~~~--~~p~-~~~a~~~vp~~ 118 (202)
T PLN00120 47 FDPLGLVDDGDQE---KFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSG--TSFS--DIPN-GFAALDAIPTA 118 (202)
T ss_pred CCCCccCCCCCHH---HHHHHHHHHhhcccHHHHhhccceeecccccCCCcccccc--cccc--cccc-chhhhhhcchh
Confidence 9999997543222 6899999999999999999999999997 56666442110 0111 1111 11111111222
Q ss_pred HHHHHHHHHHHHhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCCCC--CCCCC-cchhhhhhhhhhhhcchhh
Q 023899 157 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFN--PLGLG-KDEKSMKDFKLKEVKNGRL 233 (275)
Q Consensus 157 l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG~~~FD--PLgl~-~d~e~~~~~k~kEIkNGRL 233 (275)
.+++++++||++|+.++.+.. ++.++|||+.++ ++||. .|+|+++++|+||||||||
T Consensus 119 g~~qi~~~ig~~E~~~~~~~~--------------------~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRL 178 (202)
T PLN00120 119 GLLQILAFIGFLELAVMKDIT--------------------GEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRA 178 (202)
T ss_pred HHHHHHHHHHHHHHHhhcccc--------------------cCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 334457889999987654321 112456643222 33333 2788999999999999999
Q ss_pred HHHHHhHHhhhhhcccccch
Q 023899 234 AMLAILGYFVQGLVTGVGPY 253 (275)
Q Consensus 234 AMlAi~G~~~Q~~vTG~gP~ 253 (275)
|||||+||++|+.++|+.|+
T Consensus 179 AMiai~G~~~qe~l~g~~~~ 198 (202)
T PLN00120 179 AQMGILALMVHEQLGVELPI 198 (202)
T ss_pred HHHHHHHHHHHHHccCCCcC
Confidence 99999999999999999886
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.62 E-value=2.4e-16 Score=145.22 Aligned_cols=68 Identities=35% Similarity=0.563 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccchhhH-------HhhhcCCccc
Q 023899 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNL-------LDHLADPVNN 266 (275)
Q Consensus 199 d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL-------~~hl~dP~~~ 266 (275)
|..+|||++||||||++|+|+++++|++||||||+||+|++|+++|+++++.++++++ .+++.||...
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l 150 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTL 150 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHH
Confidence 4468999999999999999999999999999999999999999999999988776643 2356677543
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.59 E-value=6.9e-16 Score=141.08 Aligned_cols=55 Identities=36% Similarity=0.633 Sum_probs=52.1
Q ss_pred CCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccch
Q 023899 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 253 (275)
Q Consensus 199 d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~ 253 (275)
|..+|||++||||||.+|+++++++|++|||||||||||++|+++|+++|+.+++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 4568999999999999999999999999999999999999999999999998876
No 17
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.58 E-value=1.5e-15 Score=139.08 Aligned_cols=76 Identities=32% Similarity=0.468 Sum_probs=61.8
Q ss_pred hhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcc
Q 023899 169 EHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT 248 (275)
Q Consensus 169 E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vT 248 (275)
.-++|.+..+||++...+. ++ |..+|||++||||+|.+|+|.++++|.+||+|||+||+|++||++|+++|
T Consensus 50 ~~k~w~p~~~~~~~~~~P~-----~l----~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~ 120 (255)
T PLN00170 50 PKKSWIPAVKGGGNLVDPE-----WL----DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120 (255)
T ss_pred CCccccCCCCCCcccCCcc-----cc----cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHcc
Confidence 3456777777776653321 22 45689999999999999999999999999999999999999999999999
Q ss_pred cccch
Q 023899 249 GVGPY 253 (275)
Q Consensus 249 G~gP~ 253 (275)
|...+
T Consensus 121 g~~w~ 125 (255)
T PLN00170 121 GIPWF 125 (255)
T ss_pred CCChh
Confidence 76433
No 18
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.54 E-value=3.3e-15 Score=136.80 Aligned_cols=53 Identities=34% Similarity=0.557 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhccccc
Q 023899 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251 (275)
Q Consensus 199 d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~g 251 (275)
|..+|||++||||||.+|+++++++|++||||||+||+|++|+++|++++..+
T Consensus 59 dg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 59 DGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 55799999999999999999999999999999999999999999999987654
No 19
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.49 E-value=1.3e-14 Score=136.41 Aligned_cols=54 Identities=31% Similarity=0.453 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccc
Q 023899 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252 (275)
Q Consensus 199 d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP 252 (275)
|..+|||++||||||++|+++++++|++||||||+||||++|+++|+++++.+.
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 456899999999999999999999999999999999999999999999886543
No 20
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.49 E-value=1.5e-14 Score=131.76 Aligned_cols=54 Identities=35% Similarity=0.521 Sum_probs=50.2
Q ss_pred CCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccc
Q 023899 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGP 252 (275)
Q Consensus 199 d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP 252 (275)
|...|||++||||||++|+|+++++|++||||||+||||++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 346899999999999999999999999999999999999999999999987654
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.47 E-value=2.4e-14 Score=131.83 Aligned_cols=53 Identities=28% Similarity=0.429 Sum_probs=49.1
Q ss_pred CCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhccccc
Q 023899 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251 (275)
Q Consensus 199 d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~g 251 (275)
|..+|||++||||||++|+|+++++|..||||||+||+|++|+++|+++++.+
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 34689999999999999999999999999999999999999999999998643
No 22
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.46 E-value=3.5e-14 Score=129.46 Aligned_cols=50 Identities=32% Similarity=0.473 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcc
Q 023899 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT 248 (275)
Q Consensus 199 d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vT 248 (275)
|..+|||++||||||++|+|+++++|.+||||||+||+|++|+++|++++
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 45799999999999999999999999999999999999999999999975
No 23
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.41 E-value=1.2e-13 Score=126.08 Aligned_cols=51 Identities=33% Similarity=0.481 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhccc
Q 023899 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249 (275)
Q Consensus 199 d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG 249 (275)
|..+|||++||||+|++++++++++|..||||||+||+|++|+++|++++.
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 457899999999999999999999999999999999999999999999753
No 24
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.41 E-value=1.3e-13 Score=127.09 Aligned_cols=56 Identities=34% Similarity=0.500 Sum_probs=47.4
Q ss_pred CCCCCCCCCCCCCCCCcchh------hhhhhhhhhhcchhhHHHHHhHHhhhhhcccccchhh
Q 023899 199 DPAYPGGPLFNPLGLGKDEK------SMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN 255 (275)
Q Consensus 199 d~~yPG~~~FDPLgl~~d~e------~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~n 255 (275)
|...|||++||||||+ |++ +.+++|.+||+|||+||||++||++|+++++.+.+.+
T Consensus 56 dG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~ 117 (262)
T PLN00048 56 DGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQ 117 (262)
T ss_pred CCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence 4468999999999997 333 4567889999999999999999999999998777643
No 25
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.40 E-value=1.4e-13 Score=128.01 Aligned_cols=52 Identities=40% Similarity=0.611 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCCCCCCcchhh-------------------------------------------hhhhhhhhhcchhhHH
Q 023899 199 DPAYPGGPLFNPLGLGKDEKS-------------------------------------------MKDFKLKEVKNGRLAM 235 (275)
Q Consensus 199 d~~yPG~~~FDPLgl~~d~e~-------------------------------------------~~~~k~kEIkNGRLAM 235 (275)
|..+|||++||||||+++||. ++++|..||+|||+||
T Consensus 66 dGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRwAM 145 (286)
T PLN00187 66 DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAM 145 (286)
T ss_pred cCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHHHH
Confidence 346899999999999999885 5999999999999999
Q ss_pred HHHhHHhhhhhcccc
Q 023899 236 LAILGYFVQGLVTGV 250 (275)
Q Consensus 236 lAi~G~~~Q~~vTG~ 250 (275)
+|++|++++|+++|.
T Consensus 146 LAvaG~lvpEll~G~ 160 (286)
T PLN00187 146 LATLGALSVEALTGV 160 (286)
T ss_pred HHhhchhhHHhccCC
Confidence 999999999998764
No 26
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.34 E-value=6.9e-13 Score=118.81 Aligned_cols=48 Identities=38% Similarity=0.605 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCCc-chhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccc
Q 023899 203 PGGPLFNPLGLGK-DEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250 (275)
Q Consensus 203 PG~~~FDPLgl~~-d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~ 250 (275)
.||++||||||.+ ++|+++++|.+||||||+||+|++|+++|+.++.-
T Consensus 54 ~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~p 102 (209)
T PLN00089 54 TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIP 102 (209)
T ss_pred CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Confidence 6888899999984 67789999999999999999999999999997643
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.32 E-value=1.1e-12 Score=111.45 Aligned_cols=50 Identities=42% Similarity=0.651 Sum_probs=46.1
Q ss_pred CCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccc
Q 023899 200 PAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGV 250 (275)
Q Consensus 200 ~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~ 250 (275)
..++|+++|||++|.+++ +++++|..||||||+||+|++|++++++.++.
T Consensus 7 G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 7 GSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp STSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred CCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 358899999999999877 89999999999999999999999999999874
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.01 E-value=1.3e-10 Score=103.76 Aligned_cols=44 Identities=41% Similarity=0.780 Sum_probs=39.5
Q ss_pred CCCCCCCCCCCCC--cchhhhhhhhhhhhcchhhHHHHHhHHhhhhh
Q 023899 202 YPGGPLFNPLGLG--KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 246 (275)
Q Consensus 202 yPG~~~FDPLgl~--~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~ 246 (275)
-|.++ |||+||. +|+++++++|.+||||||+||+|++|+++|+.
T Consensus 42 ~p~g~-fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 42 APLGF-FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCC-CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 35554 9999996 57899999999999999999999999999996
No 29
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.02 E-value=2.9e-06 Score=73.88 Aligned_cols=47 Identities=34% Similarity=0.463 Sum_probs=41.1
Q ss_pred hhhhhhhhhhhcchhhHHHHHhHHhhhhhcc-cccchhhHHhhhcCCc
Q 023899 218 KSMKDFKLKEVKNGRLAMLAILGYFVQGLVT-GVGPYQNLLDHLADPV 264 (275)
Q Consensus 218 e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vT-G~gP~~nL~~hl~dP~ 264 (275)
...++.|..|+.||||||+||+--++.|++| |+||+.||...-.-|.
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi 177 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPV 177 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcc
Confidence 4577888999999999999999999999999 9999999976655553
No 30
>PHA02337 putative high light inducible protein
Probab=98.02 E-value=3e-06 Score=55.51 Aligned_cols=28 Identities=29% Similarity=0.192 Sum_probs=25.8
Q ss_pred hhhhcchhhHHHHHhHHhhhhhcccccc
Q 023899 225 LKEVKNGRLAMLAILGYFVQGLVTGVGP 252 (275)
Q Consensus 225 ~kEIkNGRLAMlAi~G~~~Q~~vTG~gP 252 (275)
..|+-||||||+||...+.-+..||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4799999999999999999999999864
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.46 E-value=6.6e-05 Score=68.20 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=33.5
Q ss_pred hhhhhhcchhhHHHHHhHHhhhhhcccccchhhHHhh
Q 023899 223 FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDH 259 (275)
Q Consensus 223 ~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL~~h 259 (275)
+...|+-|||+|||||+..++-|.+||++.++|+...
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 4558999999999999999999999999999998654
No 32
>PHA02337 putative high light inducible protein
Probab=97.37 E-value=4.9e-05 Score=49.85 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=25.0
Q ss_pred hhhhhhccceeeehhhhhhhhhhhccCC
Q 023899 99 AYGEVINGRYAMLGAVGAIAPEILGKAG 126 (275)
Q Consensus 99 r~aElkHGR~AMLA~~G~~~~e~l~~~g 126 (275)
.++|+.|||+||++++-.+..|+++..+
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~ 30 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQI 30 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 4699999999999999999999987654
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=96.02 E-value=0.0011 Score=60.41 Aligned_cols=31 Identities=35% Similarity=0.464 Sum_probs=27.5
Q ss_pred hhhhhhccceeeehhhhhhhhhhhccCCCCC
Q 023899 99 AYGEVINGRYAMLGAVGAIAPEILGKAGLIP 129 (275)
Q Consensus 99 r~aElkHGR~AMLA~~G~~~~e~l~~~g~~~ 129 (275)
.++|+.|||+||+|++-.++.|+++..|++.
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~ 190 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVD 190 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHHH
Confidence 4789999999999999999999998877654
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=94.23 E-value=0.01 Score=52.13 Aligned_cols=37 Identities=35% Similarity=0.343 Sum_probs=30.9
Q ss_pred ccchhhhhhhhccceeeehhhhhhhhhhhc-cCCCCCc
Q 023899 94 EPKWLAYGEVINGRYAMLGAVGAIAPEILG-KAGLIPQ 130 (275)
Q Consensus 94 ~~~~~r~aElkHGR~AMLA~~G~~~~e~l~-~~g~~~~ 130 (275)
..+..+.-|+.|||+||++++-.++.|+++ ..|++.+
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Q 168 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQ 168 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 345566789999999999999999999998 7776553
No 35
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=48.23 E-value=9.3 Score=37.20 Aligned_cols=57 Identities=25% Similarity=0.535 Sum_probs=37.8
Q ss_pred CCCCCCCCCCCCCC-CCCCCCcccchhhhhhhhccc------eeeehhhhhhhhhhhccCCCCCcc
Q 023899 73 PGDYGFDPLGLSDP-EGTGGFIEPKWLAYGEVINGR------YAMLGAVGAIAPEILGKAGLIPQE 131 (275)
Q Consensus 73 pGd~GfDPlGl~~~-~~~~~~~~~~~~r~aElkHGR------~AMLA~~G~~~~e~l~~~g~~~~~ 131 (275)
-.||||-=. |+.| +.-.+++--+|||.-||--|. +.|.| +||++.|+++...+.|..
T Consensus 142 LCDFGFAR~-L~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWA-iGCv~aEl~~G~pL~PG~ 205 (396)
T KOG0593|consen 142 LCDFGFART-LSAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWA-IGCVFAELLTGEPLWPGR 205 (396)
T ss_pred eccchhhHh-hcCCcchhhhhhhhhhccChhhhcccCcCCCcccchh-hhHHHHHHhcCCcCCCCc
Confidence 478887432 2212 211223455899999999995 56665 699999999876666654
No 36
>PLN02449 ferrochelatase
Probab=44.28 E-value=14 Score=37.62 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=20.3
Q ss_pred hHHHHHhHHhhhhhcccccch
Q 023899 233 LAMLAILGYFVQGLVTGVGPY 253 (275)
Q Consensus 233 LAMlAi~G~~~Q~~vTG~gP~ 253 (275)
+||+||+.+++-+++||+||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999997
No 37
>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=41.49 E-value=16 Score=34.97 Aligned_cols=38 Identities=26% Similarity=0.513 Sum_probs=29.9
Q ss_pred ccchhhhhhhhccc------eeeehhhhhhhhhhhccCCCCCccc
Q 023899 94 EPKWLAYGEVINGR------YAMLGAVGAIAPEILGKAGLIPQET 132 (275)
Q Consensus 94 ~~~~~r~aElkHGR------~AMLA~~G~~~~e~l~~~g~~~~~~ 132 (275)
--+|||.-||--|- +.|.| +||++.|++....++|.++
T Consensus 163 ~TRWYRAPELLfGsr~Yg~~VDmWa-vGCI~AELllr~P~fpG~s 206 (318)
T KOG0659|consen 163 VTRWYRAPELLFGSRQYGTGVDMWA-VGCIFAELLLRVPFFPGDS 206 (318)
T ss_pred eeeeccChHHhccchhcCCcchhhh-HHHHHHHHHccCCCCCCCc
Confidence 34899999988775 78886 6999999987766666644
No 38
>PHA00003 B internal scaffolding protein
Probab=24.40 E-value=71 Score=26.32 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHH
Q 023899 198 GDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGY 241 (275)
Q Consensus 198 ~d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~ 241 (275)
.++.+|-++.|||--- .-+.++.|..||.+||-+.-==+|.
T Consensus 40 ~~~t~p~gLRrdpvq~---d~EaERqkr~~iEagk~~c~RrFGg 80 (120)
T PHA00003 40 ANGTDPSGLRRDPVQQ---DLEAERQKRADIEAGKAICARRFGG 80 (120)
T ss_pred CCCCCccccccCcccc---hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4667888888888532 2245577778999999876544443
Done!