Query 023899
Match_columns 275
No_of_seqs 232 out of 1243
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:40:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_3 LHCA3, type II chloroph 100.0 2.8E-73 9.7E-78 522.6 7.9 275 1-275 1-276 (276)
2 2wsc_2 LHCA2, type II chloroph 100.0 6.7E-63 2.3E-67 452.4 6.4 208 50-275 59-269 (269)
3 3pl9_A Chlorophyll A-B binding 100.0 4.5E-62 1.6E-66 440.0 4.6 194 50-272 6-242 (243)
4 2bhw_A Chlorophyll A-B binding 100.0 2.7E-59 9.2E-64 421.4 12.7 204 45-273 11-226 (232)
5 2wsc_4 Chlorophyll A-B binding 100.0 9.9E-61 3.4E-65 434.8 1.0 202 50-274 47-250 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 5.6E-55 1.9E-59 394.6 7.5 187 53-274 43-239 (241)
7 2wsc_4 Chlorophyll A-B binding 99.5 4.1E-15 1.4E-19 135.1 1.4 54 200-253 68-121 (251)
8 2bhw_A Chlorophyll A-B binding 99.5 3.1E-14 1.1E-18 128.0 4.6 51 199-249 37-87 (232)
9 2wsc_2 LHCA2, type II chloroph 99.4 1.1E-14 3.8E-19 133.3 0.8 54 200-253 79-132 (269)
10 3pl9_A Chlorophyll A-B binding 99.4 9.6E-14 3.3E-18 125.2 1.9 51 199-249 25-118 (243)
11 2wsc_1 AT3G54890, LHCA1; photo 99.3 1.3E-13 4.5E-18 124.5 1.1 49 200-248 60-108 (241)
12 2wsc_3 LHCA3, type II chloroph 99.2 1.1E-12 3.8E-17 120.5 1.2 56 69-129 200-255 (276)
No 1
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=2.8e-73 Score=522.59 Aligned_cols=275 Identities=87% Similarity=1.419 Sum_probs=148.4
Q ss_pred Chhhhhhhccccch-hHHHHHHhhccccCCCCCcCccccceeeecCCCCcccCCCCCccccCcccccccCCCCCCCCCCC
Q 023899 1 MATQALVSSSLTSS-VETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFD 79 (275)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~l~G~~pGd~GfD 79 (275)
||+.+++++++.+. ..+.++++|.|.+..++..+.+.+|+||+++.++++++++|++|+|+.++|+||||++|||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~R~~wlP~~~~P~~L~G~~pGD~GfD 80 (276)
T 2wsc_3 1 MAAQALVSSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFASKQSLSYLDGSLPGDYGFD 80 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccchhhhccccchhhhhhhccCccccccccccccccceeEecccCCccccCCCccccCCCCCCcccccCcCCCccCCC
Confidence 56555555443333 34455577877776666555667899999988878899999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCCCCCccchhhhhccCccCCCCccccccchhHHHH
Q 023899 80 PLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFV 159 (275)
Q Consensus 80 PlGl~~~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~~~~~~~~~w~~ag~vp~~g~~~~~~~~~~l~~ 159 (275)
||||+|+++.+++++++|+|++|||||||||||++|++++|+++..|+++.+....|++.++||++|..|||.++.++++
T Consensus 81 PlGl~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~ 160 (276)
T 2wsc_3 81 PLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFV 160 (276)
T ss_dssp ----CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCCCSTTH
T ss_pred ccccCChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccccccCcchhhhhhcccchhHHHHhccchHHHH
Confidence 99999988777777889999999999999999999999999999889887555556999999999999999999988899
Q ss_pred HHHHHHHHHhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHh
Q 023899 160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239 (275)
Q Consensus 160 ~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~ 239 (275)
+|+++||++|.+|++++.+||+++.++++++++...+..|+.||||++||||||.+|+++++++|++||||||||||||+
T Consensus 161 ~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~ 240 (276)
T 2wsc_3 161 FEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAIL 240 (276)
T ss_dssp HHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccCCcccccccccccccccccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHH
Confidence 99999999999999999999999988888776665556688999999999999998888899999999999999999999
Q ss_pred HHhhhhhcccccchhhHHhhhcCCccchhhccccCC
Q 023899 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275 (275)
Q Consensus 240 G~~~Q~~vTG~gP~~nL~~hl~dP~~~n~~~~~~~~ 275 (275)
|+++|+++||++|++||.+||+||+||||++++.+|
T Consensus 241 g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~~ 276 (276)
T 2wsc_3 241 GYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKFH 276 (276)
T ss_dssp HHHSSCCCCSSCCSCC--------------------
T ss_pred HHHHHHHhcCCChHHHHHHhccCcccchhhhhccCC
Confidence 999999999999999999999999999999999875
No 2
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=6.7e-63 Score=452.35 Aligned_cols=208 Identities=44% Similarity=0.862 Sum_probs=150.8
Q ss_pred ccCCCCCccccCcccccccCCCCCCCCCCCCCCC-CCCCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCCCC
Q 023899 50 KQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLI 128 (275)
Q Consensus 50 ~~~~~r~~~~~~~~~p~~l~G~~pGd~GfDPlGl-~~~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~~ 128 (275)
+++++|++|+++.++|+||||++||||||||||| .|++ +++|||++|||||||||||++|++++|+++..|.+
T Consensus 59 ~~~~~r~~wlpg~~~P~~L~G~~pGD~GfDPlGL~~d~e------~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 59 VAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPE------SLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp -----------------------------------CCCS------CCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred ccCCCcccccCCCCCcccccCcCCCCCCCCccccCCCHH------HHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 3677999999999999999999999999999999 5555 67899999999999999999999999999988876
Q ss_pred CccchhhhhccCccCCCCccccccchhHHHHHHHHHHHHHhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 023899 129 PQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLF 208 (275)
Q Consensus 129 ~~~~~~~w~~ag~vp~~g~~~~~~~~~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG~~~F 208 (275)
.. ..|+++ |..+||.++.+++++|+++||++|.+|++++.+||+++.++.+.. ...+.+|..||||++|
T Consensus 133 ~~---p~w~~a------G~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~--~~~~~~d~~~PG~~~f 201 (269)
T 2wsc_2 133 NT---PSWYTA------GEQEYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPN--NKLTGTDVGYPGGLWF 201 (269)
T ss_dssp SC---CCCCST------TSSSSCCCTTSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSS--CCSSTTSCSCTTCSSC
T ss_pred cC---cccccc------chhhhhcchHHHHHHHHHHHHHHHHHHHhccccCCcccccccccc--ccccccccCCCCCccc
Confidence 31 248875 445788888888888999999999999999999999887654432 1222357789999999
Q ss_pred CCCCCC-cchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccchhhHH-hhhcCCccchhhccccCC
Q 023899 209 NPLGLG-KDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLL-DHLADPVNNNVLTSLKFH 275 (275)
Q Consensus 209 DPLgl~-~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL~-~hl~dP~~~n~~~~~~~~ 275 (275)
|||||. .|+|+++++|++||||||||||||+|+++|+.+||+||++||. +||+|| ||||++++..|
T Consensus 202 DPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~~~ 269 (269)
T 2wsc_2 202 DPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFTPK 269 (269)
T ss_dssp CCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSCCC
T ss_pred CccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhccCC
Confidence 999998 4788899999999999999999999999999999999999999 999999 99999999875
No 3
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=4.5e-62 Score=439.96 Aligned_cols=194 Identities=39% Similarity=0.729 Sum_probs=129.8
Q ss_pred ccCCCCCccccCcccccccCCCCCCCCCCCCCCCC-CCCC----------------CCC---------------------
Q 023899 50 KQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEG----------------TGG--------------------- 91 (275)
Q Consensus 50 ~~~~~r~~~~~~~~~p~~l~G~~pGd~GfDPlGl~-~~~~----------------~~~--------------------- 91 (275)
++.++|++|+|+.++|+||||++|||||||||||+ +||. .++
T Consensus 6 ~~~~~r~~w~pg~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 85 (243)
T 3pl9_A 6 GFSTDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSE 85 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcccccccCCCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccc
Confidence 44568999999999999999999999999999995 4431 000
Q ss_pred CcccchhhhhhhhccceeeehhhhhhhhhhhccCCCCCccchhhhhccCccCCCCccccccch-----hHHHHHHHHHHH
Q 023899 92 FIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP-----YTLFVLEMALMG 166 (275)
Q Consensus 92 ~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~~~~~~~~~w~~ag~vp~~g~~~~~~~~-----~~l~~~~~~~~G 166 (275)
..+++|||++|||||||||||++||+++|+++. +.|+++|++...+..+|++.+ .+++++|+++||
T Consensus 86 ~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g---------~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG 156 (243)
T 3pl9_A 86 VFGLQRFRECELIHGRWAMLATLGALTVEGLTG---------ITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIG 156 (243)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------CCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcC---------cccccccccccccccccccCccchhhHHHHHHHHHHHH
Confidence 014799999999999999999999999999853 258877764333345677654 267888999999
Q ss_pred HHhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhh
Q 023899 167 FAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGL 246 (275)
Q Consensus 167 ~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~ 246 (275)
++|.+|+++.. + .+..||||+ ||||||.+|+|+++++|.+|||||||||+||+|+++|++
T Consensus 157 ~~E~~R~~~~~-~------------------~~~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~ 216 (243)
T 3pl9_A 157 YIEFQRNAELD-T------------------EKRLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAA 216 (243)
T ss_dssp HHHHHHHSCCC-T------------------TTTTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccC-C------------------ccccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 99999987521 0 234699998 999999999999999999999999999999999999999
Q ss_pred cccccchhhHHhhhcCCccchhhccc
Q 023899 247 VTGVGPYQNLLDHLADPVNNNVLTSL 272 (275)
Q Consensus 247 vTG~gP~~nL~~hl~dP~~~n~~~~~ 272 (275)
+||+||++||.+||+||+||||++|+
T Consensus 217 vtG~Gpl~~l~~HladP~~~ni~~~~ 242 (243)
T 3pl9_A 217 VTGKGPLNNWVTHLSDPLHTTILDRF 242 (243)
T ss_dssp HHSSCHHHHHHHHHHCSGGGSTTTTT
T ss_pred hcCCChHHHHHHHhcCcchhhhhhhc
Confidence 99999999999999999999999997
No 4
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=2.7e-59 Score=421.38 Aligned_cols=204 Identities=45% Similarity=0.804 Sum_probs=170.5
Q ss_pred CCCCcccCCCCCccccC--cccccccCCCCCCCCCCCCCCCCC-CCCCCCCcccchhhhhhhhccceeeehhhhhhhhhh
Q 023899 45 STPPVKQGADRPLWFAS--KQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEI 121 (275)
Q Consensus 45 ~~~~~~~~~~r~~~~~~--~~~p~~l~G~~pGd~GfDPlGl~~-~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~ 121 (275)
++.+.+++++|++|+++ .++|+||||++|||||||||||++ ++ +++||||+|||||||||||++||++||+
T Consensus 11 ~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e------~~~r~ReaELkHGR~AMLA~~G~lv~E~ 84 (232)
T 2bhw_A 11 SSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE------TFSKNRELEVIHSRWAMLGALGSVFPEL 84 (232)
T ss_dssp CTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHH------HHHHHHHHHHhccchHHHhhhhhhhHHH
Confidence 33456889999999964 478999999999999999999964 33 7899999999999999999999999999
Q ss_pred hccCCCCCccchhhhhccCc-cCCCCccccccch--------hHHHHHHHHHHHHHhhhhhccccCCCCCCccccccccc
Q 023899 122 LGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK 192 (275)
Q Consensus 122 l~~~g~~~~~~~~~w~~ag~-vp~~g~~~~~~~~--------~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~ 192 (275)
++..|+...+ ..|+++|. +...+..+|++.| ..++++|+++||++|.+|+++ |..+
T Consensus 85 l~~~G~~~~~--~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~----g~~g--------- 149 (232)
T 2bhw_A 85 LSRNGVKFGE--AVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG----GPLG--------- 149 (232)
T ss_dssp HHTTTCCCSC--CSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHE----ETTE---------
T ss_pred hccCCcCCcc--cccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcc----Cccc---------
Confidence 9887764433 35888774 3333344565543 356778999999999998865 1111
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccchhhHHhhhcCCccchhhccc
Q 023899 193 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 272 (275)
Q Consensus 193 ~~~g~~d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL~~hl~dP~~~n~~~~~ 272 (275)
...|+.||||+ ||||+|.+|+|+++++|.+|||||||||+||+|+++|+.+||++|++||.+|++||+||||+++.
T Consensus 150 ---~~~d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~ 225 (232)
T 2bhw_A 150 ---EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYA 225 (232)
T ss_dssp ---ECSSSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGT
T ss_pred ---ccccccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHH
Confidence 11356799997 99999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 023899 273 K 273 (275)
Q Consensus 273 ~ 273 (275)
.
T Consensus 226 ~ 226 (232)
T 2bhw_A 226 T 226 (232)
T ss_dssp T
T ss_pred H
Confidence 4
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=9.9e-61 Score=434.76 Aligned_cols=202 Identities=44% Similarity=0.814 Sum_probs=140.7
Q ss_pred ccCC-CCCccccCcccccccCCCCCCCCCCCCCCCC-CCCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCCC
Q 023899 50 KQGA-DRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGL 127 (275)
Q Consensus 50 ~~~~-~r~~~~~~~~~p~~l~G~~pGd~GfDPlGl~-~~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~ 127 (275)
.+++ +|++|+++.++|+||||++|||||||||||+ |++ +++|+|++|||||||||||++|++++|+++..|+
T Consensus 47 ~~~~~~r~~~~pg~~~p~~l~g~~pGd~gfDPlGl~~d~e------~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~ 120 (251)
T 2wsc_4 47 FKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPE------NLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120 (251)
T ss_dssp ----------------------------------CCCSCC------CTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCS
T ss_pred ccCcchhhhccCCCCCccccCCCcCCCCCCCccccCCChH------HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCc
Confidence 4555 7999999999999999999999999999995 454 6789999999999999999999999999998887
Q ss_pred CCccchhhhhccCccCCCCccccccchhHHHHHHHHHHHHHhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCC
Q 023899 128 IPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPL 207 (275)
Q Consensus 128 ~~~~~~~~w~~ag~vp~~g~~~~~~~~~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG~~~ 207 (275)
+.. ..|+++ |..+||.++.+++++|+++||++|.+|++++.+||+++.++.+...+. +..|+.||||+
T Consensus 121 ~~~---p~w~~a------G~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~--~~~d~~yPGg~- 188 (251)
T 2wsc_4 121 INV---PKWYAA------GKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSL--PAGEVGYPGGI- 188 (251)
T ss_dssp SCC---CCCSCC------CSSSCSSCSSCTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSS--CCHHHHSSCCT-
T ss_pred cCC---cccccc------chHhhhccchHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccc--ccccccCCCCc-
Confidence 631 258875 445688877777778889999999999999999999887665432211 12356799998
Q ss_pred CCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccchhhHHhhhcCCccchhhccccC
Q 023899 208 FNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKF 274 (275)
Q Consensus 208 FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL~~hl~dP~~~n~~~~~~~ 274 (275)
||||++.+ ++++|+|||||||| ||||+||++|+.+||++|++||.+||+||+||||++++..
T Consensus 189 FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~~ 250 (251)
T 2wsc_4 189 FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGG 250 (251)
T ss_dssp TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC----
T ss_pred cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhcC
Confidence 99999975 67899999999999 9999999999999999999999999999999999999864
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=5.6e-55 Score=394.65 Aligned_cols=187 Identities=41% Similarity=0.761 Sum_probs=129.8
Q ss_pred CCCCccccCcccccccCCCCCCCCCCCCCCCCC-CCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCCCCCcc
Q 023899 53 ADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQE 131 (275)
Q Consensus 53 ~~r~~~~~~~~~p~~l~G~~pGd~GfDPlGl~~-~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~~~~~ 131 (275)
.+|.+|+|+.++|+||||++||||||||+||++ ++ +++|||++|||||||||||++|+++||+++..+
T Consensus 43 sm~~~w~P~~~~P~~L~G~~pgd~gfDPlgl~~~~~------~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~----- 111 (241)
T 2wsc_1 43 RMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPA------NLERYKESELIHCRWAMLAVPGILVPEALGYGN----- 111 (241)
T ss_dssp ------------------CTTSSCCCSSTTTTTTTT------HHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC------
T ss_pred ccccccCCCCCCcccccCCCCCcCCcCccccCCCHH------HHHHHHHHHHhhchhHHhhhhcccchhhccCCc-----
Confidence 467899999999999999999999999999964 44 789999999999999999999999999976522
Q ss_pred chhhhhccCcc--CCCCcccc------ccchhHHHHHHHHHHHHHhhhhhccccCCCCCCcccccccccccCCCCCCCCC
Q 023899 132 TALAWFQTGVI--PPAGTYNY------WADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYP 203 (275)
Q Consensus 132 ~~~~w~~ag~v--p~~g~~~~------~~~~~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yP 203 (275)
|++++.. -+.|..+| |....+++++|+++||++|.+|+.+. + ..++.||
T Consensus 112 ----~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~--------~-----------~~~~~yP 168 (241)
T 2wsc_1 112 ----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK--------D-----------PEKKKYP 168 (241)
T ss_dssp --------CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC--------S-----------SCCSSSC
T ss_pred ----cccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc--------C-----------CCCCCCC
Confidence 3332221 12233344 33345677889999999999986431 0 1245799
Q ss_pred CCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhh-hcccccchhhHHhhhcCCccchhhccccC
Q 023899 204 GGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQG-LVTGVGPYQNLLDHLADPVNNNVLTSLKF 274 (275)
Q Consensus 204 G~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~-~vTG~gP~~nL~~hl~dP~~~n~~~~~~~ 274 (275)
|| .|||||+.+|+|+++++|.+|||||||||+|++|+++|+ .+||+||++||.+|++||+||||++++..
T Consensus 169 gg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~~ 239 (241)
T 2wsc_1 169 GG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 239 (241)
T ss_dssp SC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC---------
T ss_pred CC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeecc
Confidence 99 599999999999999999999999999999999999999 58999999999999999999999998754
No 7
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.48 E-value=4.1e-15 Score=135.07 Aligned_cols=54 Identities=35% Similarity=0.637 Sum_probs=39.3
Q ss_pred CCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccch
Q 023899 200 PAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 253 (275)
Q Consensus 200 ~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~ 253 (275)
..+|||++||||||++|+|+++++|.+||||||+||+|++|+++||++|+.+++
T Consensus 68 g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 68 GSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp -------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 358999999999999999999999999999999999999999999999998766
No 8
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.45 E-value=3.1e-14 Score=127.95 Aligned_cols=51 Identities=27% Similarity=0.423 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhccc
Q 023899 199 DPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTG 249 (275)
Q Consensus 199 d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG 249 (275)
|..+|||++||||||++|+|+++++|..||||||+||+|++|+++|++++.
T Consensus 37 dG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 37 TGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 346899999999999999999999999999999999999999999998764
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.44 E-value=1.1e-14 Score=133.34 Aligned_cols=54 Identities=35% Similarity=0.552 Sum_probs=36.2
Q ss_pred CCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccch
Q 023899 200 PAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPY 253 (275)
Q Consensus 200 ~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~ 253 (275)
..+|||++||||||++|+|+++++|.+||||||+||+|++|+++|+++++.+.+
T Consensus 79 G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 79 GSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp ---------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred CcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 358999999999999999999999999999999999999999999999876543
No 10
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.37 E-value=9.6e-14 Score=125.24 Aligned_cols=51 Identities=39% Similarity=0.602 Sum_probs=28.8
Q ss_pred CCCCCCCCCCCCCCCCcchh-------------------------------------------hhhhhhhhhhcchhhHH
Q 023899 199 DPAYPGGPLFNPLGLGKDEK-------------------------------------------SMKDFKLKEVKNGRLAM 235 (275)
Q Consensus 199 d~~yPG~~~FDPLgl~~d~e-------------------------------------------~~~~~k~kEIkNGRLAM 235 (275)
|..+|||++||||||+++|| .++++|..||||||+||
T Consensus 25 dGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ReaELkHGRwAM 104 (243)
T 3pl9_A 25 DGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAM 104 (243)
T ss_dssp ---------------------------------------------------------------CCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhhHHHHHhhhhcchhHH
Confidence 34589999999999999987 37899999999999999
Q ss_pred HHHhHHhhhhhccc
Q 023899 236 LAILGYFVQGLVTG 249 (275)
Q Consensus 236 lAi~G~~~Q~~vTG 249 (275)
+|++|++++|+++|
T Consensus 105 LAvlG~lvpE~l~g 118 (243)
T 3pl9_A 105 LATLGALTVEGLTG 118 (243)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHhHHhhcC
Confidence 99999999999875
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.34 E-value=1.3e-13 Score=124.50 Aligned_cols=49 Identities=35% Similarity=0.539 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcc
Q 023899 200 PAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT 248 (275)
Q Consensus 200 ~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vT 248 (275)
..+|||++||||||++|+|+++++|..||||||+||+|++|+++|++++
T Consensus 60 G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~ 108 (241)
T 2wsc_1 60 GSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 108 (241)
T ss_dssp -CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred CCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhcc
Confidence 3589999999999999999999999999999999999999999999975
No 12
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.24 E-value=1.1e-12 Score=120.48 Aligned_cols=56 Identities=34% Similarity=0.490 Sum_probs=43.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCCCCC
Q 023899 69 DGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIP 129 (275)
Q Consensus 69 ~G~~pGd~GfDPlGl~~~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~~~ 129 (275)
|..+|||++|||+||.+.+. +++++|++||||||+||+|++|++++|+++..|.+.
T Consensus 200 d~~yPG~~~fDPlgl~~~~~-----~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~ 255 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEK-----SLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQ 255 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC----------CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSC
T ss_pred cccCCCcccccchhcccccH-----HHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHH
Confidence 44689999999999964321 467899999999999999999999999998877654
Done!