Query 023900
Match_columns 275
No_of_seqs 215 out of 1687
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:28:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14994 SAM-dependent 16S rib 100.0 1.7E-40 3.7E-45 304.8 23.6 197 78-274 9-205 (287)
2 COG2875 CobM Precorrin-4 methy 100.0 1.5E-39 3.2E-44 284.6 19.3 196 79-275 1-203 (254)
3 COG0007 CysG Uroporphyrinogen- 100.0 1E-38 2.2E-43 284.2 20.4 191 79-274 2-205 (244)
4 PRK15473 cbiF cobalt-precorrin 100.0 1.6E-37 3.5E-42 281.3 22.8 190 81-274 8-207 (257)
5 PRK06136 uroporphyrin-III C-me 100.0 4E-37 8.6E-42 276.4 21.6 191 79-274 1-208 (249)
6 TIGR01465 cobM_cbiF precorrin- 100.0 5.8E-37 1.3E-41 272.0 21.8 188 83-274 1-198 (229)
7 PLN02625 uroporphyrin-III C-me 100.0 4.9E-36 1.1E-40 272.5 23.0 192 78-274 12-220 (263)
8 TIGR01469 cobA_cysG_Cterm urop 100.0 4.7E-36 1E-40 267.1 21.0 188 82-274 1-204 (236)
9 COG0313 Predicted methyltransf 100.0 1.5E-35 3.3E-40 266.6 21.0 197 78-274 2-198 (275)
10 PRK15478 cbiH cobalt-precorrin 100.0 1.5E-35 3.3E-40 266.3 20.7 190 82-274 1-200 (241)
11 PRK05765 precorrin-3B C17-meth 100.0 1.6E-35 3.5E-40 266.7 19.7 191 81-274 2-199 (246)
12 PRK07168 bifunctional uroporph 100.0 2.9E-35 6.3E-40 286.7 21.7 190 79-274 1-206 (474)
13 TIGR01467 cobI_cbiL precorrin- 100.0 5E-35 1.1E-39 260.4 21.1 190 81-274 1-208 (230)
14 PF00590 TP_methylase: Tetrapy 100.0 1.2E-34 2.5E-39 252.7 18.8 189 82-274 1-201 (210)
15 COG1010 CobJ Precorrin-3B meth 100.0 2.8E-34 6.1E-39 252.0 19.3 192 79-274 1-203 (249)
16 PRK05948 precorrin-2 methyltra 100.0 4.5E-34 9.8E-39 256.2 20.1 191 80-274 3-212 (238)
17 PRK05990 precorrin-2 C(20)-met 100.0 9.5E-34 2.1E-38 254.6 20.9 190 80-274 2-215 (241)
18 TIGR01466 cobJ_cbiH precorrin- 100.0 8.6E-34 1.9E-38 253.6 20.5 186 83-274 1-199 (239)
19 PRK05576 cobalt-precorrin-2 C( 100.0 6.1E-34 1.3E-38 253.6 19.3 185 80-274 1-205 (229)
20 PRK10637 cysG siroheme synthas 100.0 1.2E-33 2.6E-38 274.9 21.8 192 78-274 213-418 (457)
21 COG2243 CobF Precorrin-2 methy 100.0 7.8E-33 1.7E-37 245.4 19.9 191 80-274 1-208 (234)
22 PRK05991 precorrin-3B C17-meth 100.0 1.3E-32 2.9E-37 248.2 20.1 187 79-274 1-205 (250)
23 PRK05787 cobalt-precorrin-6Y C 100.0 1.2E-32 2.5E-37 241.2 18.4 182 82-274 1-185 (210)
24 COG2241 CobL Precorrin-6B meth 100.0 1.8E-32 3.8E-37 240.2 18.1 179 82-274 1-183 (210)
25 TIGR02467 CbiE precorrin-6y C5 100.0 3.1E-32 6.8E-37 238.4 17.4 180 85-274 1-183 (204)
26 TIGR00096 probable S-adenosylm 100.0 2.1E-31 4.5E-36 243.0 20.0 192 82-274 1-192 (276)
27 PRK08284 precorrin 6A synthase 100.0 3.2E-31 6.9E-36 239.7 19.1 182 81-274 2-216 (253)
28 TIGR02434 CobF precorrin-6A sy 100.0 9.7E-31 2.1E-35 236.0 18.2 179 82-274 2-215 (249)
29 TIGR00522 dph5 diphthine synth 100.0 1.3E-30 2.9E-35 236.3 18.4 189 82-274 1-215 (257)
30 PRK04160 diphthine synthase; P 100.0 2.9E-29 6.3E-34 227.4 20.0 190 82-274 1-215 (258)
31 KOG1527 Uroporphyrin III methy 100.0 7.4E-30 1.6E-34 234.5 13.3 190 80-274 255-457 (506)
32 PTZ00175 diphthine synthase; P 100.0 9.4E-28 2E-32 218.9 20.3 188 82-274 2-230 (270)
33 COG1798 DPH5 Diphthamide biosy 99.7 6.1E-17 1.3E-21 143.9 16.1 190 82-274 1-214 (260)
34 COG3956 Protein containing tet 99.3 3.2E-11 7E-16 111.6 15.5 183 79-273 1-197 (488)
35 KOG3123 Diphthine synthase [Tr 99.3 3.6E-11 7.9E-16 104.7 12.0 188 82-274 1-229 (272)
36 TIGR01921 DAP-DH diaminopimela 88.7 21 0.00047 33.7 14.8 159 102-266 56-235 (324)
37 TIGR03365 Bsubt_queE 7-cyano-7 68.0 14 0.0003 33.1 5.9 57 139-196 58-114 (238)
38 COG0391 Uncharacterized conser 67.5 46 0.001 31.5 9.4 101 81-189 167-289 (323)
39 COG1712 Predicted dinucleotide 64.1 81 0.0018 28.7 9.8 100 82-191 2-121 (255)
40 TIGR01819 F420_cofD LPPG:FO 2- 62.7 29 0.00064 32.4 7.1 77 82-178 161-238 (297)
41 COG1634 Uncharacterized Rossma 60.4 15 0.00033 33.0 4.5 73 81-165 53-125 (232)
42 COG0602 NrdG Organic radical a 60.2 25 0.00054 31.0 6.0 52 139-192 58-109 (212)
43 cd01524 RHOD_Pyr_redox Member 54.9 80 0.0017 23.0 7.5 83 97-191 2-84 (90)
44 COG1737 RpiR Transcriptional r 53.7 1.7E+02 0.0038 26.6 10.6 105 140-250 117-224 (281)
45 COG1504 Uncharacterized conser 53.1 46 0.00099 26.8 5.6 82 106-194 20-101 (121)
46 KOG0024 Sorbitol dehydrogenase 51.0 47 0.001 31.7 6.3 31 81-113 171-201 (354)
47 COG1063 Tdh Threonine dehydrog 49.1 1.1E+02 0.0023 28.8 8.7 99 81-192 170-271 (350)
48 cd07186 CofD_like LPPG:FO 2-ph 49.0 1.3E+02 0.0028 28.3 8.9 70 93-178 170-241 (303)
49 PRK13606 LPPG:FO 2-phospho-L-l 47.1 68 0.0015 30.1 6.8 77 82-178 164-241 (303)
50 PRK00861 putative lipid kinase 46.8 1E+02 0.0022 28.2 7.9 52 148-205 52-103 (300)
51 PLN02925 4-hydroxy-3-methylbut 46.2 45 0.00098 34.8 5.9 121 14-155 593-725 (733)
52 PRK13057 putative lipid kinase 45.5 1.1E+02 0.0023 27.9 7.8 54 146-205 43-96 (287)
53 PRK02261 methylaspartate mutas 43.5 1.8E+02 0.0039 23.7 9.7 120 79-200 1-129 (137)
54 PRK05301 pyrroloquinoline quin 43.3 82 0.0018 29.8 7.0 51 140-191 49-99 (378)
55 COG2243 CobF Precorrin-2 methy 42.9 15 0.00032 33.3 1.6 54 1-54 173-228 (234)
56 PRK05443 polyphosphate kinase; 42.7 1.1E+02 0.0024 32.0 8.2 84 100-185 332-425 (691)
57 COG1597 LCB5 Sphingosine kinas 41.0 1.2E+02 0.0026 28.1 7.5 57 144-206 49-106 (301)
58 TIGR02495 NrdG2 anaerobic ribo 40.7 95 0.0021 26.0 6.4 53 138-192 48-100 (191)
59 PRK10017 colanic acid biosynth 40.0 1.4E+02 0.003 29.2 8.1 46 82-128 150-197 (426)
60 TIGR02109 PQQ_syn_pqqE coenzym 39.1 94 0.002 29.1 6.6 44 145-189 44-88 (358)
61 PF00781 DAGK_cat: Diacylglyce 39.1 1.2E+02 0.0025 23.9 6.3 51 149-205 50-104 (130)
62 PRK11914 diacylglycerol kinase 38.7 1.1E+02 0.0023 28.1 6.8 54 146-205 57-110 (306)
63 PRK12361 hypothetical protein; 36.6 1.9E+02 0.004 29.1 8.6 52 148-204 292-343 (547)
64 PF04055 Radical_SAM: Radical 36.3 76 0.0016 24.8 4.8 63 139-202 30-100 (166)
65 COG0421 SpeE Spermidine syntha 35.9 1.1E+02 0.0023 28.4 6.2 74 81-165 78-160 (282)
66 PRK14719 bifunctional RNAse/5- 35.5 1.8E+02 0.004 27.8 8.0 72 108-186 25-99 (360)
67 COG1184 GCD2 Translation initi 34.9 2E+02 0.0043 27.0 7.8 61 139-203 129-190 (301)
68 TIGR01470 cysG_Nterm siroheme 34.8 3.1E+02 0.0066 23.8 8.8 89 81-188 10-100 (205)
69 TIGR00238 KamA family protein. 34.8 3E+02 0.0066 25.8 9.3 39 141-180 145-187 (331)
70 COG3980 spsG Spore coat polysa 34.4 1.5E+02 0.0033 27.9 6.8 60 49-112 130-193 (318)
71 COG1154 Dxs Deoxyxylulose-5-ph 34.3 95 0.0021 32.0 5.9 49 222-274 543-595 (627)
72 PLN00093 geranylgeranyl diphos 34.0 41 0.00089 33.0 3.4 33 79-114 38-70 (450)
73 cd01335 Radical_SAM Radical SA 33.9 1.3E+02 0.0029 24.1 6.0 48 144-192 35-84 (204)
74 TIGR00284 dihydropteroate synt 33.3 4.9E+02 0.011 26.2 10.8 39 81-119 179-219 (499)
75 PRK11557 putative DNA-binding 32.9 3.6E+02 0.0078 24.1 11.0 93 141-240 116-210 (278)
76 PF13394 Fer4_14: 4Fe-4S singl 32.2 76 0.0017 24.3 4.1 35 157-192 51-90 (119)
77 PRK09456 ?-D-glucose-1-phospha 32.0 3.1E+02 0.0067 23.0 10.1 56 188-250 141-196 (199)
78 TIGR01826 CofD_related conserv 32.0 3.5E+02 0.0075 25.5 9.0 29 82-114 152-180 (310)
79 cd05013 SIS_RpiR RpiR-like pro 31.7 2.3E+02 0.0051 21.6 10.8 92 143-241 3-96 (139)
80 PRK13059 putative lipid kinase 31.6 2.4E+02 0.0051 25.8 7.8 54 146-205 49-104 (295)
81 PRK15128 23S rRNA m(5)C1962 me 31.6 26 0.00056 34.0 1.5 25 50-74 334-358 (396)
82 PF13090 PP_kinase_C: Polyphos 31.4 2E+02 0.0043 27.6 7.3 58 102-160 4-70 (352)
83 TIGR00511 ribulose_e2b2 ribose 31.4 2E+02 0.0043 26.7 7.3 57 140-200 126-183 (301)
84 PRK08535 translation initiatio 31.4 2E+02 0.0042 26.9 7.3 57 140-200 131-188 (310)
85 PF13353 Fer4_12: 4Fe-4S singl 31.2 85 0.0018 24.6 4.3 43 140-183 38-84 (139)
86 TIGR02668 moaA_archaeal probab 30.8 1.5E+02 0.0032 27.0 6.3 50 139-189 42-92 (302)
87 TIGR02666 moaA molybdenum cofa 30.7 1.6E+02 0.0035 27.3 6.7 65 139-204 45-114 (334)
88 PRK13337 putative lipid kinase 30.2 2.2E+02 0.0047 26.1 7.4 52 148-205 52-105 (304)
89 PRK11337 DNA-binding transcrip 30.1 4.1E+02 0.0089 23.9 10.5 95 141-240 128-222 (292)
90 COG1736 DPH2 Diphthamide synth 30.1 3E+02 0.0066 26.4 8.3 91 107-204 76-170 (347)
91 PF07966 A1_Propeptide: A1 Pro 30.0 17 0.00038 21.8 0.0 22 4-25 6-27 (29)
92 PLN02335 anthranilate synthase 30.0 45 0.00096 29.5 2.6 36 150-190 15-50 (222)
93 cd01523 RHOD_Lact_B Member of 29.5 2.3E+02 0.005 20.8 8.6 39 147-190 55-93 (100)
94 PRK00421 murC UDP-N-acetylmura 29.5 3.8E+02 0.0083 26.0 9.3 40 138-180 419-458 (461)
95 COG0855 Ppk Polyphosphate kina 29.4 1.2E+02 0.0026 31.5 5.8 85 100-192 336-434 (696)
96 PF02780 Transketolase_C: Tran 29.2 38 0.00083 26.6 1.9 35 151-188 7-41 (124)
97 KOG1467 Translation initiation 28.1 3.9E+02 0.0084 27.0 8.8 64 128-198 360-428 (556)
98 TIGR00824 EIIA-man PTS system, 28.1 1.7E+02 0.0037 23.0 5.4 51 142-198 47-99 (116)
99 cd03466 Nitrogenase_NifN_2 Nit 27.4 5E+02 0.011 25.2 9.6 49 142-193 140-192 (429)
100 cd07388 MPP_Tt1561 Thermus the 27.4 2.1E+02 0.0046 25.4 6.5 53 140-194 17-74 (224)
101 COG1748 LYS9 Saccharopine dehy 27.3 5.9E+02 0.013 24.8 10.3 67 147-218 86-159 (389)
102 PF00389 2-Hacid_dh: D-isomer 27.3 3.1E+02 0.0067 21.5 7.9 91 96-197 7-98 (133)
103 PRK05990 precorrin-2 C(20)-met 26.6 38 0.00083 30.3 1.6 50 5-54 184-235 (241)
104 KOG2882 p-Nitrophenyl phosphat 25.9 4.2E+02 0.009 25.0 8.2 92 92-201 5-99 (306)
105 TIGR03855 NAD_NadX aspartate d 25.6 1.5E+02 0.0032 26.5 5.2 93 140-241 48-141 (229)
106 TIGR02493 PFLA pyruvate format 25.6 1.6E+02 0.0036 25.5 5.5 33 156-189 68-101 (235)
107 PF01210 NAD_Gly3P_dh_N: NAD-d 25.6 97 0.0021 25.5 3.8 18 96-113 59-76 (157)
108 PF02441 Flavoprotein: Flavopr 25.4 86 0.0019 24.9 3.3 46 154-201 1-46 (129)
109 cd03145 GAT1_cyanophycinase Ty 25.3 4.4E+02 0.0095 22.9 8.1 50 146-200 77-132 (217)
110 TIGR00715 precor6x_red precorr 25.2 5.2E+02 0.011 23.4 9.7 80 181-269 151-234 (256)
111 TIGR03705 poly_P_kin polyphosp 25.2 2.7E+02 0.0059 29.1 7.6 82 100-185 323-416 (672)
112 COG2069 CdhD CO dehydrogenase/ 25.0 4.8E+02 0.01 24.8 8.4 88 81-168 168-265 (403)
113 PF06842 DUF1242: Protein of u 24.9 15 0.00032 23.5 -1.0 19 50-68 6-25 (36)
114 cd05014 SIS_Kpsf KpsF-like pro 24.2 3.3E+02 0.0072 20.8 7.4 25 81-107 1-25 (128)
115 PF13344 Hydrolase_6: Haloacid 24.1 1.6E+02 0.0034 22.5 4.5 57 143-203 20-76 (101)
116 PF01933 UPF0052: Uncharacteri 23.7 1.1E+02 0.0024 28.6 4.1 32 81-114 160-191 (300)
117 TIGR03278 methan_mark_10 putat 23.5 2.5E+02 0.0054 27.4 6.7 49 138-187 55-107 (404)
118 cd00006 PTS_IIA_man PTS_IIA, P 23.5 3.6E+02 0.0078 21.0 7.0 55 142-202 46-102 (122)
119 TIGR01261 hisB_Nterm histidino 23.2 4.3E+02 0.0094 21.9 11.6 101 144-251 36-160 (161)
120 PRK06475 salicylate hydroxylas 23.1 68 0.0015 30.4 2.7 33 79-114 1-33 (400)
121 smart00046 DAGKc Diacylglycero 22.8 3.8E+02 0.0082 21.0 7.1 46 155-206 51-101 (124)
122 TIGR01458 HAD-SF-IIA-hyp3 HAD- 22.7 5.5E+02 0.012 22.8 10.2 55 143-201 27-81 (257)
123 TIGR03470 HpnH hopanoid biosyn 22.7 1.6E+02 0.0035 27.4 5.1 39 153-192 72-110 (318)
124 PRK09628 oorB 2-oxoglutarate-a 22.4 6.1E+02 0.013 23.3 8.8 17 151-169 84-100 (277)
125 PRK07475 hypothetical protein; 22.1 3.1E+02 0.0068 24.5 6.6 131 46-193 14-159 (245)
126 COG1832 Predicted CoA-binding 21.9 1.9E+02 0.0042 24.0 4.7 39 145-185 8-46 (140)
127 smart00481 POLIIIAc DNA polyme 21.7 1.9E+02 0.0042 19.8 4.2 43 145-192 20-62 (67)
128 PRK08335 translation initiatio 21.7 4E+02 0.0088 24.6 7.4 52 140-193 120-171 (275)
129 TIGR03820 lys_2_3_AblA lysine- 21.7 2.2E+02 0.0047 28.0 5.9 39 141-180 141-183 (417)
130 PRK10076 pyruvate formate lyas 21.6 1.8E+02 0.0039 25.6 4.9 51 138-190 20-75 (213)
131 PRK07239 bifunctional uroporph 21.3 5.1E+02 0.011 24.4 8.3 30 173-202 192-221 (381)
132 cd07229 Pat_TGL3_like Triacylg 21.3 1.6E+02 0.0034 28.7 4.8 64 138-204 66-131 (391)
133 cd04915 ACT_AK-Ectoine_2 ACT d 21.2 1.1E+02 0.0024 21.4 2.8 30 81-111 3-32 (66)
134 PRK13054 lipid kinase; Reviewe 21.1 2.2E+02 0.0049 25.9 5.7 52 148-205 51-106 (300)
135 PRK13762 tRNA-modifying enzyme 21.0 1.8E+02 0.004 27.2 5.1 36 153-189 130-165 (322)
136 cd07187 YvcK_like family of mo 20.8 7E+02 0.015 23.4 10.5 30 82-115 155-184 (308)
137 TIGR01917 gly_red_sel_B glycin 20.8 3.1E+02 0.0067 27.1 6.6 55 140-195 322-377 (431)
138 cd08186 Fe-ADH8 Iron-containin 20.8 2.8E+02 0.0061 26.4 6.4 54 143-197 44-100 (383)
139 PRK13301 putative L-aspartate 20.8 6.7E+02 0.015 23.1 8.6 68 140-211 73-144 (267)
140 PRK13361 molybdenum cofactor b 20.7 3.2E+02 0.007 25.3 6.7 50 139-189 47-98 (329)
141 PRK05637 anthranilate synthase 20.6 92 0.002 27.3 2.8 31 155-190 3-33 (208)
142 TIGR03822 AblA_like_2 lysine-2 20.2 2.2E+02 0.0047 26.6 5.4 40 142-182 123-166 (321)
143 PRK04165 acetyl-CoA decarbonyl 20.2 4.5E+02 0.0097 26.1 7.7 108 79-195 126-239 (450)
No 1
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=100.00 E-value=1.7e-40 Score=304.76 Aligned_cols=197 Identities=47% Similarity=0.759 Sum_probs=185.2
Q ss_pred CCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEE
Q 023900 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVA 157 (275)
Q Consensus 78 ~~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv 157 (275)
+++|+||+||+|||||++||+||+++|++||+|++++++.+..+++.+..+++++.++.+++++..+.|.+.+++|++|+
T Consensus 9 ~~~g~Ly~VgtgiGn~edITlRAl~~L~~aDvI~~edtr~t~~ll~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~G~~Va 88 (287)
T PRK14994 9 NSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFAINARLFALHDHNEQQKAETLLAKLQEGQNIA 88 (287)
T ss_pred CCCCeEEEEeCCCCChHHhhHHHHHHHHhCCEEEEeCCcchHHHHhhcCCCCEEEEccCCCHHHHHHHHHHHHHCCCeEE
Confidence 46699999999999999999999999999999999999888788998888888888888888888999999999999999
Q ss_pred EEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEecCCCchhHHHHHHhhcCCCeEEE
Q 023900 158 LISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIF 237 (275)
Q Consensus 158 ~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~~~~~l~~l~~~~~tlVl 237 (275)
++||.|||++|+++.++++.+++.|++|++||||||+++|+|.+|+|.+.|.|.||+|.+..+|.+.|+.++....|+||
T Consensus 89 lvSdaGdP~I~dpg~~Lv~~~~~~gi~v~vIPGiSA~~aA~a~sG~~~~~f~f~Gflp~~~~~r~~~L~~l~~~~~t~V~ 168 (287)
T PRK14994 89 LVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKALEAEPRTLIF 168 (287)
T ss_pred EEccCCCCceeCCHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHcCCCCCcceEeEECCCCCchHHHHHHHHhcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999989999999999877777789999988999999
Q ss_pred EcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 238 YVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 238 ~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
|++++++.+.++.+.+.+++++++++++++|+.+|++
T Consensus 169 yesp~R~~~~l~~l~~~~g~~~~v~i~relTk~~E~~ 205 (287)
T PRK14994 169 YESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETI 205 (287)
T ss_pred EEEChhHHHHHHHHHHhcCCCCeEEEEeeccCCCCcE
Confidence 9999999999999988888899999999999999986
No 2
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-39 Score=284.56 Aligned_cols=196 Identities=18% Similarity=0.247 Sum_probs=174.7
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEE
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~ 158 (275)
|..+|||||+||||||+||+|++++|++||+|+|+.+.+++++|+.++++++++.....+.+|+.+.+.++.++||+|++
T Consensus 1 ~~~~VyFIGAGPGdpdLiTvkg~~ll~~advviYAGSLV~~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk~VvR 80 (254)
T COG2875 1 MAMKVYFIGAGPGDPDLITVKGQRLLEKADVVIYAGSLVPPELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGKDVVR 80 (254)
T ss_pred CCceEEEEccCCCCcceeeehHHHHHhhCCEEEECCCcCCHHHHhhcCCCCEEEecCcCCHHHHHHHHHHHHHcCCeEEE
Confidence 34689999999999999999999999999999999999999999999999999877667889999999999999999999
Q ss_pred EccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc--c--EE-EEEEecCCCc-hhHHHHHHhhcCC
Q 023900 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD--E--FT-FVGFLPKHAR-SRTERLMLSANEV 232 (275)
Q Consensus 159 LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~--~--~~-~v~~l~~~~~-~~~~~l~~l~~~~ 232 (275)
| .+|||++||...+.+++|++.||++|++||+||+++|||.+|+.++ + -+ ++...+.... ...+.+..+++++
T Consensus 81 L-hSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vpe~e~l~~la~~~ 159 (254)
T COG2875 81 L-HSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTPVPEKESLAALAKHG 159 (254)
T ss_pred e-ecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccccCCCCCchhHHHHHHhcC
Confidence 9 7999999999999999999999999999999999999999999886 1 12 2222222111 0146789999999
Q ss_pred CeEEEEcCCcCHHHHHHHHHh-hcCCCcEEEeEeccCCcCcccC
Q 023900 233 KTQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEHG 275 (275)
Q Consensus 233 ~tlVl~~~~~~~~~i~~~L~e-~~~~~~~v~V~e~Lt~~~E~i~ 275 (275)
.|++||.+.+.+.++++.|++ +|++|+||+|+.+.|+|||+++
T Consensus 160 aTm~I~L~v~~I~~vv~~L~~g~y~~dtPVaVV~rAsWpDe~ii 203 (254)
T COG2875 160 ATMVIFLGVHAIDKVVEELLEGGYPPDTPVAVVYRASWPDEKII 203 (254)
T ss_pred ceeEeeehhhHHHHHHHHHhcCCCCCCCCEEEEEecCCCcccEE
Confidence 999999999999999999999 6999999999999999999974
No 3
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=100.00 E-value=1e-38 Score=284.21 Aligned_cols=191 Identities=21% Similarity=0.249 Sum_probs=172.0
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecC------CCCHHHHHHHHHHHhhC
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH------KFNESQREQTVLNRLKQ 152 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~------~~~~~e~~~~i~~~l~~ 152 (275)
++|++|+||+|||||++||+||.++|++||+|+| |..+++++++.++++++++..+ ...++++.+.+.+.+++
T Consensus 2 ~~GkV~lVGAGPGdp~LLTlka~~~L~~ADvvly-D~LV~~~il~~~~~~a~~i~vGkr~g~~~~~q~eIn~~lv~~a~~ 80 (244)
T COG0007 2 KPGKVYLVGAGPGDPGLLTLRALRALQEADVVLY-DRLVPEEVLALARRDAERIYVGKRPGGHSKPQDEINALLVELARE 80 (244)
T ss_pred CcceEEEEecCCCChhhhhHHHHHHHhhCCEEEE-cCcCCHHHHHhhccCCEEEEecCcCCCCCCCHHHHHHHHHHHHhc
Confidence 5699999999999999999999999999999999 6789999999998888877543 24688999999999999
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEecCCCchhHHHHH
Q 023900 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSRTERLM 226 (275)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~------~~~~v~~l~~~~~~~~~~l~ 226 (275)
|++|++| +.|||++||++.++++.+.+.|+++||+|||||..++++..|||++ .|.|+ +.|..+...+|.
T Consensus 81 G~~VVRL-KgGDP~iFGRggEE~~~l~~~gI~~eVVPGiTSa~a~~a~agIPlT~R~~a~s~~~v---Tgh~~~~~~~w~ 156 (244)
T COG0007 81 GKRVVRL-KGGDPYIFGRGGEEIEALAEAGIEFEVVPGITSAIAAPAYAGIPLTHRGVASSFTFV---TGHDRDGKLDWE 156 (244)
T ss_pred CCeEEEe-cCCCCCeecCcHHHHHHHHHcCCceEEeCccchHHHHHHHcCCceeecCccceEEEE---eCcCCCCCcChH
Confidence 9999999 8999999999999999999999999999999999999999999996 44555 666543225689
Q ss_pred HhhcCCCeEEEEcCCcCHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 227 LSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 227 ~l~~~~~tlVl~~~~~~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
.+++..+|+||||+.+++.++.+.|+++ +++++|++|+++.|+++||+
T Consensus 157 ~la~~~~TlVi~Mg~~~l~~i~~~Li~~G~~~~tpvAvi~~gt~~~Qr~ 205 (244)
T COG0007 157 ALARSVGTLVILMGASRLAEIARELIAHGRSPDTPVAVIENGTTPDQRV 205 (244)
T ss_pred HhcccCCCEEEEeCcchHHHHHHHHHHcCCCCCCCEEEEEcCCCcceEE
Confidence 9998899999999999999999999996 78899999999999999986
No 4
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=100.00 E-value=1.6e-37 Score=281.33 Aligned_cols=190 Identities=17% Similarity=0.225 Sum_probs=162.5
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEc
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS 160 (275)
++||+||+||||||+||++|+++|++||+|+++++...+.+++.+..+++.+.....+.++..+.+.+.+++|++||+|+
T Consensus 8 ~~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~g~~Vv~L~ 87 (257)
T PRK15473 8 RCVWFVGAGPGDKELITLKGYRLLQQAQVVIYAGSLINTELLDYCPAQAECHDSAELHLEQIIDLMEAGVKAGKTVVRLQ 87 (257)
T ss_pred CEEEEEEeCCCChHHhhHHHHHHHHhCCEEEEecccCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 89999999999999999999999999999999866666777877766555443333456778888888888999999995
Q ss_pred cCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEecCCCch---hHHHHHHhhcC
Q 023900 161 DAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARS---RTERLMLSANE 231 (275)
Q Consensus 161 ~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~------~~~~v~~l~~~~~~---~~~~l~~l~~~ 231 (275)
+|||++||++.++++.+.+.+++++++|||||+|+|+|++|+||+ ++.+++ .|++. ....|..+++.
T Consensus 88 -sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~v~s---~hG~~~~~~~~~l~~~~~~ 163 (257)
T PRK15473 88 -TGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYTVPEVSQSLIITR---MEGRTPVPAREQLESFASH 163 (257)
T ss_pred -CcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHHHcCCCcccccccccEEEEe---ecCCCCCCchhhHHHHhcC
Confidence 999999999999999999999999999999999999999999995 555553 34321 12468888888
Q ss_pred CCeEEEEcCCcCHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 232 VKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 232 ~~tlVl~~~~~~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
+.++|||++.++++++++.|.+. ++++++++|++|+|+++|++
T Consensus 164 ~~t~vi~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i 207 (257)
T PRK15473 164 QTSMAIFLSVQRIHRVAERLIAGGYPATTPVAVIYKATWPESQT 207 (257)
T ss_pred CCeEEEECCchhHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEE
Confidence 88999999999999999999885 77799999999999999987
No 5
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=100.00 E-value=4e-37 Score=276.40 Aligned_cols=191 Identities=22% Similarity=0.298 Sum_probs=159.3
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCC------CCHHHHHHHHHHHhhC
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK------FNESQREQTVLNRLKQ 152 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~------~~~~e~~~~i~~~l~~ 152 (275)
|+|+||+||+|||||++||+||+++|++||+|++++ +..+++++.+..+++.+..++ ..+++..+.+.+.+.+
T Consensus 1 ~~g~l~iVGvGpGdp~~lT~~A~~~L~~advI~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (249)
T PRK06136 1 MMGKVYLVGAGPGDPDLITLKGVRLLEQADVVLYDD-LVSPEILAYAKPDAELIYVGKRAGRHSTKQEEINRLLVDYARK 79 (249)
T ss_pred CCcEEEEEEECCCChHHHHHHHHHHHhcCCEEEEcC-CCCHHHHhhCCCCCEEEeCCCcCCCCCcCHHHHHHHHHHHHHC
Confidence 679999999999999999999999999999999976 566778877665544443321 2234566777788889
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEecCCCchh----H
Q 023900 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSR----T 222 (275)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~------~~~~v~~l~~~~~~~----~ 222 (275)
|++||++ ++|||++||++.++++++.+.+++++|||||||+++|+|++|+||+ ++.++ +.|++.. .
T Consensus 80 g~~V~~l-~~GDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~l~~~~~~~~~~~~---~~~~~~~~~~~~ 155 (249)
T PRK06136 80 GKVVVRL-KGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFV---TGHEAAGKLEPE 155 (249)
T ss_pred CCeEEEE-eCCCchhhhcHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCcccCCcceeEEEE---ecccCCCccccc
Confidence 9999999 6999999999999999999989999999999999999999999997 44444 5554321 1
Q ss_pred HHHHHhhcCCCeEEEEcCCcCHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 223 ~~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
..++.+++.+.++|||+..++..++++.|.+. +++++++++++|+|+++|++
T Consensus 156 ~~~~~l~~~~~~~vl~~~~~~~~~i~~~L~~~g~~~~~~~~v~~~lg~~~E~i 208 (249)
T PRK06136 156 VNWSALADGADTLVIYMGVRNLPYIAAQLLAAGRAPDTPVAIIENGTTPEQRV 208 (249)
T ss_pred cCHHHHhCCCCeEEEECCHHHHHHHHHHHHHcCCCCCCeEEEEEeCCCCCcEE
Confidence 23567777789999999999999999999886 77789999999999999986
No 6
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=100.00 E-value=5.8e-37 Score=271.95 Aligned_cols=188 Identities=21% Similarity=0.277 Sum_probs=160.0
Q ss_pred EEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEccC
Q 023900 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDA 162 (275)
Q Consensus 83 l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS~~ 162 (275)
||+||+|||||++||+||+++|++||+|+|++++.+..+++.+.++++++......+++..+.+.+.+++|++|++| .+
T Consensus 1 v~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V~~L-~~ 79 (229)
T TIGR01465 1 VYFIGAGPGDPDLITVKGRKLLESADVILYAGSLVPPELLAWCRPGAEVVNSAGMSLEEIVDIMSDAHREGKLVVRL-HT 79 (229)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhCCCCCEEEEcCCCCHHHHHHHHHHHHHCCCeEEEE-eC
Confidence 69999999999999999999999999999987667777787776666665544456677888888888999999999 59
Q ss_pred CCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEecCCCch---hHHHHHHhhcCCC
Q 023900 163 GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARS---RTERLMLSANEVK 233 (275)
Q Consensus 163 GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~------~~~~v~~l~~~~~~---~~~~l~~l~~~~~ 233 (275)
|||++||++.++++.+.+.|++++|+|||||+++|+|++|+||. .+.+. +.|++. ..+.|..+++.+.
T Consensus 80 GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a~~g~~l~~~~~~~~~~~~---~~~g~~~~~~~~~l~~~~~~~~ 156 (229)
T TIGR01465 80 GDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILT---RAEGRTPMPEGEKLADLAKHGA 156 (229)
T ss_pred cCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHHHcCCCccccCCccEEEEE---eccCCCCCCChHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999994 22232 334321 1345777777788
Q ss_pred eEEEEcCCcCHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 234 TQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 234 tlVl~~~~~~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
++++|++++++.++.+.|.+. +++++++++++|+|+++|++
T Consensus 157 ~~vi~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i 198 (229)
T TIGR01465 157 TMAIFLSAHILDKVVKELIEGGYSEDTPVAVVYRATWPDEKI 198 (229)
T ss_pred eEEEECcHHHHHHHHHHHHHcCcCCCCcEEEEEeCCCCCcEE
Confidence 999999999999999999886 77789999999999999987
No 7
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=100.00 E-value=4.9e-36 Score=272.45 Aligned_cols=192 Identities=21% Similarity=0.261 Sum_probs=160.5
Q ss_pred CCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecC------CCCHHHHHHHHHHHhh
Q 023900 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH------KFNESQREQTVLNRLK 151 (275)
Q Consensus 78 ~~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~------~~~~~e~~~~i~~~l~ 151 (275)
.|+|+||+||+|||||++||++|+++|++||+|++++ ++++++++.+..+++.+.++ ....++..+.+.+.+.
T Consensus 12 ~~~g~l~vVG~GpGdp~~LTl~a~~~l~~ADvI~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 90 (263)
T PLN02625 12 EGPGNVFLVGTGPGDPDLLTLKALRLLQTADVVLYDR-LVSPDILDLVPPGAELLYVGKRGGYHSRTQEEIHELLLSFAE 90 (263)
T ss_pred CCCCEEEEEEeCCCChHHhHHHHHHHHhcCCEEEEeC-cCCHHHHHhcCCCCEEEecCCcCCccccCHHHHHHHHHHHHH
Confidence 4779999999999999999999999999999999965 46677888776555544322 1234566677778888
Q ss_pred CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcc------EEEEEEecCCCch----h
Q 023900 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE------FTFVGFLPKHARS----R 221 (275)
Q Consensus 152 ~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~------~~~v~~l~~~~~~----~ 221 (275)
+|++|+++ ++|||++||++.++++++.+.|++++|||||||+++|+|++|+||++ +.++ +.|++. +
T Consensus 91 ~g~~Vvvl-~~GDP~~ys~~~~l~~~l~~~~~~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~i~---s~h~~~~~~~~ 166 (263)
T PLN02625 91 AGKTVVRL-KGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRFL---TGHDREGGTDP 166 (263)
T ss_pred CCCeEEEE-cCCCchhhhhHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCccceEEEE---ecccCCCcccc
Confidence 89999999 59999999999999999999999999999999999999999999973 5554 666542 1
Q ss_pred HHHHHHhhcCCCeEEEEcCCcCHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 222 TERLMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 222 ~~~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
...++.+...+.++|||++.+++.++++.|.+. +++++++++++++|+++|++
T Consensus 167 ~~~~~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i 220 (263)
T PLN02625 167 LDVAEAAADPDTTLVVYMGLGTLPSLAEKLIAAGLPPDTPAAAVERGTTPEQRV 220 (263)
T ss_pred hhhHHHHhCCCCeEEEECchhhHHHHHHHHHHcCCCCCCeEEEEEECCCCCcEE
Confidence 234666677778999999999999999999885 67789999999999999987
No 8
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=100.00 E-value=4.7e-36 Score=267.09 Aligned_cols=188 Identities=22% Similarity=0.304 Sum_probs=157.4
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecC------CCCHHHHHHHHHHHhhCCCe
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH------KFNESQREQTVLNRLKQGEI 155 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~------~~~~~e~~~~i~~~l~~G~~ 155 (275)
+||+||+|||||++||++|+++|++||+|+++ .++++++++.++.+.+.+... ....++..+.+.+.+++|++
T Consensus 1 ~i~iVG~GpG~~~~lT~~a~~~l~~advI~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~ 79 (236)
T TIGR01469 1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYD-ALVSPEILAYAPPQAELIDVGKRPGCHSKKQEEINRLLVELAREGKK 79 (236)
T ss_pred CEEEEecCCCChHHhHHHHHHHHHhCCEEEEe-CCCCHHHHhhCCCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCe
Confidence 58999999999999999999999999999995 566778888776555554331 12345566667788889999
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEecCCCchhH---HHHH
Q 023900 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSRT---ERLM 226 (275)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~------~~~~v~~l~~~~~~~~---~~l~ 226 (275)
|+++ ++|||++||++.++++++.+.+++++++|||||+|+|+|++|+||+ ++.++ +.|+++.. ..++
T Consensus 80 V~~l-~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~~~i~---~~~~~~~~~~~~~~~ 155 (236)
T TIGR01469 80 VVRL-KGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFV---TGHEADDKALEVDWE 155 (236)
T ss_pred EEEE-eCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCCcceEEEE---EcccCCCcccccCHH
Confidence 9999 6999999999999999999889999999999999999999999998 46665 55543211 1377
Q ss_pred HhhcCCCeEEEEcCCcCHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 227 LSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 227 ~l~~~~~tlVl~~~~~~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
.+.+...++|+|++.++..++++.|.+. +++++++++++|+|+++|++
T Consensus 156 ~~~~~~~~~vl~~~~~~~~~i~~~L~~~g~~~~~~~~v~~~lg~~~E~i 204 (236)
T TIGR01469 156 ALAKGAGTLVIYMGVRNLPEIAKELIEHGRSPDTPVAVVEWATTPNQRV 204 (236)
T ss_pred HHhcCCCeEEEECCHHHHHHHHHHHHHcCCCCCCcEEEEEECCCCCcEE
Confidence 8887788999999999999999999886 77789999999999999986
No 9
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=266.57 Aligned_cols=197 Identities=53% Similarity=0.806 Sum_probs=189.9
Q ss_pred CCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEE
Q 023900 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVA 157 (275)
Q Consensus 78 ~~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv 157 (275)
+|+|++|+|++..||.+.||.||+++|+++|+|+++|+|++..+|++++.+.+.+.++.+++++....+++.+++|++|+
T Consensus 2 ~~~g~LYlV~TPIGNl~Dit~Ral~~L~~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~va 81 (275)
T COG0313 2 MMMGTLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVA 81 (275)
T ss_pred CCCceEEEeCCCCCChHhcCHHHHHHHhhCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcCCeEE
Confidence 46799999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred EEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEecCCCchhHHHHHHhhcCCCeEEE
Q 023900 158 LISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIF 237 (275)
Q Consensus 158 ~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~~~~~l~~l~~~~~tlVl 237 (275)
++||.|.|++.++|..|++.+++.|++|+++||+||+..|.+.+|+|-+.|.|.||+|.+..+|...++.+.....|+||
T Consensus 82 lVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~~~F~F~GFLP~k~~~R~~~l~~l~~~~~t~If 161 (275)
T COG0313 82 LVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASGLPSQRFLFEGFLPRKSKERRKRLEALANEPRTLIF 161 (275)
T ss_pred EEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCCCCeeEeccCCCCccHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998888889998888899999
Q ss_pred EcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 238 YVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 238 ~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
|+++|++.+.++.+.+.++.+++++|+.+||+..|++
T Consensus 162 yEsphRl~~tL~d~~~~~g~~r~v~vaRELTK~~Ee~ 198 (275)
T COG0313 162 YESPHRLLATLEDIVEVLGSDREVVVARELTKLFEEI 198 (275)
T ss_pred EecchhHHHHHHHHHHHcCCCceEEEEeecccchhhe
Confidence 9999999999999999898899999999999999986
No 10
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional
Probab=100.00 E-value=1.5e-35 Score=266.31 Aligned_cols=190 Identities=20% Similarity=0.265 Sum_probs=154.7
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEcc
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISD 161 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS~ 161 (275)
+||+||+||||||+||+||+++|++||+|++++++ .++++.+..+++++..++.++.+..+.+++.+++|++|++| .
T Consensus 1 ml~~VG~GPGdp~lLTlrA~~~L~~ADvVv~~~~~--~~lv~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~g~~Vv~L-~ 77 (241)
T PRK15478 1 MLSVIGIGPGSQAMMTMEAIEALQAAEIVVGYKTY--THLVKAFTGDKQVIKTGMCKEIERCQAAIELAQAGHNVALI-S 77 (241)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHcCCEEEEcCcH--HHHHHhhcCCCEEEECCCchHHHHHHHHHHHHHCCCeEEEE-E
Confidence 49999999999999999999999999999997643 46777776677777766655566677788888999999999 5
Q ss_pred CCCCCCCchHHHHHHHhhhCC--CCEEEEccchHHHHHHHhCCCCC-ccEEEEEEe--cCCCchhHHHHHHhhcCCCeEE
Q 023900 162 AGTPGISDPGTELAKLCVDEK--IPVVPIPGASAFVAALSASGLAT-DEFTFVGFL--PKHARSRTERLMLSANEVKTQI 236 (275)
Q Consensus 162 ~GDP~iys~~~~l~~~l~~~g--i~veVIPGISS~~aaaA~lGipl-~~~~~v~~l--~~~~~~~~~~l~~l~~~~~tlV 236 (275)
+|||++||.+.++.+.+.+.+ ++++|+|||||+++|+|++|+|| .++.+.++. ...+...++.|..+.+...|++
T Consensus 78 sGDP~~~g~~~~~~~~l~~~~~~~~veviPGiSs~~aaaa~~g~plt~~~~~~s~~~~~~~~~~~~~~~~a~~~~~~tlv 157 (241)
T PRK15478 78 SGDAGIYGMAGLVLELVSKQKLDVEVRLIPGMTASIAAASLLGAPLMHDFCHISLSDLLTPWPVIEKRIVAAGEADFVIC 157 (241)
T ss_pred CCCCCcchhHHHHHHHHHhcCCCCcEEEeCCHHHHHHHHHHhCCCcccCcceeecccCCCCcHHHHHhHHHHhcCCeEEE
Confidence 999999999999999987765 56999999999999999999998 577666541 1233333345677777788999
Q ss_pred EEcCCcC-----HHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 237 FYVPPHK-----LLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 237 l~~~~~~-----~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
+||+.++ +.++.+.+.+++++++||+|++++|+++|++
T Consensus 158 lym~~~~~~~~~l~~~~~ll~~g~~~~tPvaiv~~~t~~~q~~ 200 (241)
T PRK15478 158 FYNPRSRGREGHLARAFDLLAASKSAQTPVGVVKSAGRKKEEK 200 (241)
T ss_pred EECCcccccHHHHHHHHHHHHccCCCCCEEEEEEeCCCCCeEE
Confidence 9999976 4444455555688899999999999999986
No 11
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=100.00 E-value=1.6e-35 Score=266.75 Aligned_cols=191 Identities=21% Similarity=0.276 Sum_probs=152.2
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEc
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS 160 (275)
|+||+||+||||||+||+||+++|++||+|++++++ .++++.+..+++++..++.++....+.+++.+++|++|+++
T Consensus 2 g~v~iVG~GpGdp~~lT~ra~~~L~~AdvV~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~Vv~l- 78 (246)
T PRK05765 2 GKLYIVGIGPGSKEQRTIKAQEAIEKSNVIIGYNTY--LRLISDLLDGKEVIGARMKEEIFRANTAIEKALEGNIVALV- 78 (246)
T ss_pred CEEEEEEcCCCChHHhhHHHHHHHHhCCEEEEccCH--HHHHHHhcCCCEEecCCchHHHHHHHHHHHHHHCCCcEEEE-
Confidence 789999999999999999999999999999997653 35566555566665544333333345677888899999999
Q ss_pred cCCCCCCCchHHHHHHHhhhCCC--CEEEEccchHHHHHHHhCCCCCc-cEEEEEEecC--CCchhHHHHHHhhcCCCeE
Q 023900 161 DAGTPGISDPGTELAKLCVDEKI--PVVPIPGASAFVAALSASGLATD-EFTFVGFLPK--HARSRTERLMLSANEVKTQ 235 (275)
Q Consensus 161 ~~GDP~iys~~~~l~~~l~~~gi--~veVIPGISS~~aaaA~lGipl~-~~~~v~~l~~--~~~~~~~~l~~l~~~~~tl 235 (275)
.+|||++||++.++++.+.+.|+ +++|+|||||+++|+|++|+||+ ++.+++.... +..+...+|..+.+...++
T Consensus 79 ~~GDP~i~~~~~~~~~~l~~~~~~~~veviPGiSs~~aa~a~~g~pl~~~~~~~s~~~~~~p~~~~~~~l~~~~~~~~~i 158 (246)
T PRK05765 79 SSGDPQVYGMAGLVFELISRRKLDVDVEVIPGVTAALAAAARLGSPLSLDFVVISLSDLLIPREEILHRVTKAAEADFVI 158 (246)
T ss_pred eCCCchhhhhHHHHHHHHHhcCCCCCEEEeCCHHHHHHHHHHhCCCCcCCcEEEEcCCCCCChHHHHHHHHHHhcCCeEE
Confidence 58999999999999999988876 79999999999999999999996 8888753211 1111223466677778899
Q ss_pred EEEcC--CcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 236 IFYVP--PHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 236 Vl~~~--~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
++|++ .++..++.+.|.+++++++||+|++|+|+++|++
T Consensus 159 vly~~~~~~~~~~~~~~l~~~~~~~~pv~vv~~~t~~~E~i 199 (246)
T PRK05765 159 VFYNPINENLLIEVMDIVSKHRKPNTPVGLVKSAYRNNENV 199 (246)
T ss_pred EEEcccchhHHHHHHHHHHhcCCCCCEEEEEEeCCCCCeEE
Confidence 99997 3457777777766688899999999999999986
No 12
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=2.9e-35 Score=286.69 Aligned_cols=190 Identities=23% Similarity=0.261 Sum_probs=158.6
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCC------CCHHHHHHHHHHHhhC
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK------FNESQREQTVLNRLKQ 152 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~------~~~~e~~~~i~~~l~~ 152 (275)
|.|+||+||+||||||+||+||+++|++||+|+| ++.+++.+++..++.++.+..+. ..++++.+.+.+.+++
T Consensus 1 m~G~V~lVGaGPGdp~LLTlrA~~~L~~ADVVvy-drlv~~~~l~~~~~~~~~i~~gk~~~~~~~~qe~i~~~l~~~a~~ 79 (474)
T PRK07168 1 MNGYVYLVGAGPGDEGLITKKAIECLKRADIVLY-DRLLNPFFLSYTKQTCELMYCGKMPKNHIMRQEMINAHLLQFAKE 79 (474)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhCCEEEE-eCcCCHHHHhhcCCCcEEEeccCcCCCccccHHHHHHHHHHHHhC
Confidence 4589999999999999999999999999999999 55676676666655555543321 2355666778888899
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEecCCCchh---HH
Q 023900 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSR---TE 223 (275)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~------~~~~v~~l~~~~~~~---~~ 223 (275)
|++||+| ++|||++||++.++++.+.+.|+++||||||||+++|+|++|+||+ ++.++ +.|.+.. ..
T Consensus 80 Gk~VvrL-~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~vi---T~h~~~~~~~~~ 155 (474)
T PRK07168 80 GKIVVRL-KGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLL---TGHAKGPLTDHG 155 (474)
T ss_pred CCEEEEE-eCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEEE---ccCcCCccccch
Confidence 9999999 6999999999999999999999999999999999999999999995 45554 6665321 23
Q ss_pred HHHHhhcCCCeEEEEcCCcCHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 224 RLMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 224 ~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
+|..+. ..+|+||||+.++++++++.|.+. +++++|+++++++|+++|++
T Consensus 156 ~~~~l~-~~~tlV~lm~~~~l~~I~~~L~~~G~~~~tpvavv~~~t~~~Qri 206 (474)
T PRK07168 156 KYNSSH-NSDTIAYYMGIKNLPTICENLRQAGKKEDTPVAVIEWGTTGKQRV 206 (474)
T ss_pred hHHHhc-CCCeEEEEcChhhHHHHHHHHHHcCcCCCCeEEEEEECCCCCcEE
Confidence 455555 466999999999999999999985 77899999999999999986
No 13
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=100.00 E-value=5e-35 Score=260.37 Aligned_cols=190 Identities=26% Similarity=0.310 Sum_probs=152.2
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCC-----CHHHHhhccC--CCcEE--ecCCCC--------HHHHH
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQYYNI--KTPLL--SYHKFN--------ESQRE 143 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~-----~~~lL~~~~~--~~~~i--~~~~~~--------~~e~~ 143 (275)
|+||+||+|||||++||++|+++|++||+|++++... ..+++..+.. .++++ .+++.. .++..
T Consensus 1 ~~i~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (230)
T TIGR01467 1 GKLYGVGVGPGDPELITVKALEALRSADVIAVPASKKGRESLARKIVEDYLKPNDTRILELVFPMTKDRDELEKAWDEAA 80 (230)
T ss_pred CEEEEEEecCCCcHHHHHHHHHHHhhCCEEEEeCCCCCCcchHHHHHHHhcCccCceEEEEeccccCChHHHHHHHHHHH
Confidence 5799999999999999999999999999999976432 2334444432 23332 233321 13455
Q ss_pred HHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcc-EEEEEEecCCCchhH
Q 023900 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE-FTFVGFLPKHARSRT 222 (275)
Q Consensus 144 ~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~-~~~v~~l~~~~~~~~ 222 (275)
+.+.+.+++|++||++ .+|||++||++.++++.+.+.++++++||||||+++|+|++|+||++ +.++++++.|.. .
T Consensus 81 ~~i~~~~~~g~~Vv~l-~~GDP~~y~~~~~l~~~~~~~~~~veviPGiSs~~~a~a~~g~~l~~~~~~~~~~~~~~~--~ 157 (230)
T TIGR01467 81 EAVAAELEEGRDVAFL-TLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVEGDESLAILPATAG--E 157 (230)
T ss_pred HHHHHHHHCCCcEEEE-eCCCCCcccCHHHHHHHHHHCCCcEEEeCChhHHHHHHHHhCCCcccCCceEEEEeCCCC--H
Confidence 6677788889999999 59999999999999999988889999999999999999999999985 555566677653 3
Q ss_pred HHHHHhhcCCCeEEEEcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 223 ~~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
..+...++.++++++|+++++.+++.+.|.+ .+.+.++++++|+|++||++
T Consensus 158 ~~~~~~~~~~~~vvil~~~~~~~~i~~~L~~-~g~~~~v~v~e~l~~~~E~i 208 (230)
T TIGR01467 158 AELEKALAEFDTVVLMKVGRNLPQIKEALAK-LGRLDAAVVVERATMPDEKI 208 (230)
T ss_pred HHHHHHhccCCeEEEEecCCCHHHHHHHHHH-cCCcccEEEEEECCCCCcEE
Confidence 4577777778899999999999999988876 44466899999999999987
No 14
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=100.00 E-value=1.2e-34 Score=252.73 Aligned_cols=189 Identities=21% Similarity=0.254 Sum_probs=150.5
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccC-----CCcEEecCCCCHHHHHHHH--HHHhhCCC
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNI-----KTPLLSYHKFNESQREQTV--LNRLKQGE 154 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~-----~~~~i~~~~~~~~e~~~~i--~~~l~~G~ 154 (275)
|||+||+|||||++||++|+++|++||+|+++. +. .+.+..+.+ ........ ...++..+.+ .+.+++|+
T Consensus 1 ~l~iVG~GpG~~~~lT~~a~~~l~~advv~~~~-r~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~g~ 77 (210)
T PF00590_consen 1 KLYIVGLGPGDPDLLTLRALEALKNADVVIGPE-RA-LEIVRDLLPEIFPMGKDRESLE-ESYDEIAEIIEAIEAAKEGK 77 (210)
T ss_dssp EEEEEEEBSSSGGGSBHHHHHHHHHSSEEEEET-TC-HHHHHHHHHTEETTSSEEEEEH-HHHHHHHHHHHHHHHHHTTS
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHhCCcccccc-cc-hHHHHhhccccccccccccchh-hhhhHHHHHHHHHHHHhccC
Confidence 699999999999999999999999999999976 44 344443311 11111111 1245666777 78889999
Q ss_pred eEEEEccCCCCCCCchHHHHHHHhhh--CCCCEEEEccchHHHHHHHhCCCCCccEEEEEEec--CCCchhHHHHHHhhc
Q 023900 155 IVALISDAGTPGISDPGTELAKLCVD--EKIPVVPIPGASAFVAALSASGLATDEFTFVGFLP--KHARSRTERLMLSAN 230 (275)
Q Consensus 155 ~Vv~LS~~GDP~iys~~~~l~~~l~~--~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~--~~~~~~~~~l~~l~~ 230 (275)
+|+++ .+|||++|+++.++++++.+ .|++++++|||||+++++|++|+||+++.++..+. .........+..+.+
T Consensus 78 ~V~~l-~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (210)
T PF00590_consen 78 DVVVL-VSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAARLGIPLTDGGFISLHGLRDLDTEREKLLENLLA 156 (210)
T ss_dssp EEEEE-ESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHHCTSTSSBTTTBEEEETSSSSHHHHHHHHHHHT
T ss_pred CEEEe-CCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHHHcCCcccCcEEEEEEecccccchHHHHHHHHh
Confidence 99999 49999999999999999999 89999999999999999999999999653332222 222224567888888
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 231 EVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 231 ~~~tlVl~~~~~~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
.++++++|+.++++.++++.|.+. ++.+++++|++++|+++|+|
T Consensus 157 ~~~~~vil~~~~~~~~i~~~L~~~~~~~~~~v~v~~~lg~~~E~i 201 (210)
T PF00590_consen 157 NGDTLVILTDPRRLAEIAELLLERLYPPDTPVAVGERLGYPDERI 201 (210)
T ss_dssp TTSEEEEEESGCCHHHHHHHHHHHSHTTTSEEEEEESTTSTTEEE
T ss_pred CCCEEEEEccCchHHHHHHHHHhhCCCCCcEEEHHHhcCCCCCEE
Confidence 899999999999999999999987 56789999999999999987
No 15
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=100.00 E-value=2.8e-34 Score=252.04 Aligned_cols=192 Identities=23% Similarity=0.261 Sum_probs=167.7
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEE
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~ 158 (275)
|.|+||+||+|||+++++|++|+++|++||+|+|+.+++ ++++ +.++++++..+|..+-+++++.++.+++|++|++
T Consensus 1 ~~G~L~VVGiGPG~~~~mT~~A~~al~~ad~ivGY~~Y~--d~i~-l~~~k~v~~s~m~~Ei~Ra~~AielA~~G~~Val 77 (249)
T COG1010 1 MTGKLYVVGIGPGDPELMTPEARRALEEADVIVGYTTYL--DLIE-LRPGKEVIRSGMREEIERAKEAIELAAEGRDVAL 77 (249)
T ss_pred CCceEEEEEeCCCChhhCCHHHHHHHHhCCEEEecHHHH--HHHh-cCCCCEEEeCCcHhHHHHHHHHHHHHhcCCeEEE
Confidence 569999999999999999999999999999999988766 6677 6678889888887788889999999999999999
Q ss_pred EccCCCCCCCchHHHHHHHhhhCC---CCEEEEccchHHHHHHHhCCCCCc-cEEEEEE--ecCCCchhHHHHHHhhcCC
Q 023900 159 ISDAGTPGISDPGTELAKLCVDEK---IPVVPIPGASAFVAALSASGLATD-EFTFVGF--LPKHARSRTERLMLSANEV 232 (275)
Q Consensus 159 LS~~GDP~iys~~~~l~~~l~~~g---i~veVIPGISS~~aaaA~lGipl~-~~~~v~~--l~~~~~~~~~~l~~l~~~~ 232 (275)
+| +|||++|+......+.+.+.+ ++|+|+||||++++++|++|-|+. ||+.++. +-.+|...++.+..+++.+
T Consensus 78 VS-sGDpgVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSDlLtPwe~IekRl~aAA~ad 156 (249)
T COG1010 78 VS-SGDPGVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSDLLTPWEVIEKRLRAAAEAD 156 (249)
T ss_pred Ee-CCCccHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEhHhcCCcHHHHHHHHHHHhhCC
Confidence 97 999999999988888887654 899999999999999999999995 9998863 2234555567788888889
Q ss_pred CeEEEEcCCc-----CHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 233 KTQIFYVPPH-----KLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 233 ~tlVl~~~~~-----~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
.+++||++.. ++.+.++.|+++.++++||.++.|.++++|++
T Consensus 157 fVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnagR~~e~v 203 (249)
T COG1010 157 FVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAGREGEEV 203 (249)
T ss_pred EEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEecCCCCCceE
Confidence 9999999863 46777888888888899999999999999986
No 16
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=100.00 E-value=4.5e-34 Score=256.22 Aligned_cols=191 Identities=20% Similarity=0.192 Sum_probs=149.5
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCC-----CHHHHhhc-cCCCcEE--ecCCCCH--------HHHH
Q 023900 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQYY-NIKTPLL--SYHKFNE--------SQRE 143 (275)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~-----~~~lL~~~-~~~~~~i--~~~~~~~--------~e~~ 143 (275)
.|+||+||+||||||+||+||+++|++||+|++|.... +.++++.+ .++++++ .++|..+ ++.+
T Consensus 3 ~g~ly~VGvGPGdp~LlTlkA~~~L~~advi~~p~~~~~~~s~a~~i~~~~~~~~~~~~~l~fpm~~~~~~~~~~~~~~~ 82 (238)
T PRK05948 3 LGTLYGISVGPGDPELITLKGLRLLQSAPVVAFPAGLAGQPGLAEQIIAPWLSPQQIKLPLYFPYVQDEEQLEQAWQAAA 82 (238)
T ss_pred CCEEEEEEecCCChHHhHHHHHHHHhhCCEEEEeCCCCCchhHHHHHHHHHcCCCcEEEEecCCccCChHHHHHHHHHHH
Confidence 58999999999999999999999999999999975432 23455544 3344444 3455433 2345
Q ss_pred HHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhh--CCCCEEEEccchHHHHHHHhCCCCCc-cEEEEEEecCCCch
Q 023900 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD--EKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLPKHARS 220 (275)
Q Consensus 144 ~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~--~gi~veVIPGISS~~aaaA~lGipl~-~~~~v~~l~~~~~~ 220 (275)
+.+.+.+++|++|+++ ..|||++||++.++.+.+++ .++++||||||||+++++|++|+||+ +..-+.++|.|..
T Consensus 83 ~~i~~~~~~g~~v~~l-~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGIss~~a~aa~~g~pL~~~~e~l~ii~~~~~- 160 (238)
T PRK05948 83 DQVWHYLEQGEDVAFA-CEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGVCSPLAAAAALGIPLTLGSQRLAILPALYH- 160 (238)
T ss_pred HHHHHHHHcCCeEEEE-eCCChHHHHHHHHHHHHHHhcCCCCCEEEECChhHHHHHHHHhCCCeecCCCeEEEEcCCCC-
Confidence 6778888999999999 59999999999999999887 38999999999999999999999997 2222233477753
Q ss_pred hHHHHHHhhcCCCeEEEEcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 221 RTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 221 ~~~~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
...++..+...+++|+|+..+..+++.+.|.+. +...++++++|+|+++|++
T Consensus 161 -~~~l~~~l~~~~~vVlmk~~~~~~~i~~~L~~~-g~~~~~~vv~~~~~~~E~i 212 (238)
T PRK05948 161 -LEELEQALTWADVVVLMKVSSVYPQVWQWLKAR-NLLEQASLVERATTPEQVI 212 (238)
T ss_pred -HHHHHHHHhCCCEEEEEECCccHHHHHHHHHhC-CCCCCEEEEEECCCCCcEE
Confidence 345666666678899988887889999988873 2223588999999999986
No 17
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=100.00 E-value=9.5e-34 Score=254.57 Aligned_cols=190 Identities=19% Similarity=0.169 Sum_probs=141.4
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCC----CHHHHhh-ccCCCcEE--ecCCCCH-------------
Q 023900 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH----SGKLLQY-YNIKTPLL--SYHKFNE------------- 139 (275)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~----~~~lL~~-~~~~~~~i--~~~~~~~------------- 139 (275)
+|+||+||+||||||+||+||+++|++||+|+++.... ..++++. +..+++++ .++|...
T Consensus 2 ~g~l~~VG~GPGdp~LlTlkA~~~L~~advi~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~pm~~~~~~~~~~~~~~~~ 81 (241)
T PRK05990 2 KGRLIGLGVGPGDPELLTLKALRLLQAAPVVAYFVAKGKKGNAFGIVEAHLSPGQTLLPLVYPVTTEILPPPLCYETVIA 81 (241)
T ss_pred CceEEEEeCCCCChHHhhHHHHHHHhhCCEEEEECCCCCcchHHHHHHHHcCCCceEEEeecCCccccccccchhhhHHH
Confidence 48999999999999999999999999999999974321 2356653 43444432 3343211
Q ss_pred ---HHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc-cEEEEEEec
Q 023900 140 ---SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLP 215 (275)
Q Consensus 140 ---~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~-~~~~v~~l~ 215 (275)
++.++.+.+.+++|++||+| ..|||++||++.++.+.+. .++++||||||||+++++|++|+||+ +...+.+++
T Consensus 82 ~~~~~~~~~i~~~~~~G~~Vv~L-~~GDP~iyst~~~l~~~l~-~~i~~evIPGISS~~aaaA~~gipL~~~~~~~~i~~ 159 (241)
T PRK05990 82 DFYDTSAEAVAAHLDAGRDVAVI-CEGDPFFYGSYMYLHDRLA-PRYETEVIPGVCSMLGCWSVLGAPLVYRNQSLSVLS 159 (241)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEE-eCCCcHHHhHHHHHHHHHh-cCCCEEEECcHHHHHHHHHHhCCCeEcCCeEEEEEc
Confidence 34557788888999999999 5999999999999999885 47999999999999999999999996 223333446
Q ss_pred CCCchhHHHHHHhhcCCCeEEEEcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 216 ~~~~~~~~~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
.+... .+.++.+.. .++.|+|+..++++++.+.|.+. +...++++++|+|+++|++
T Consensus 160 ~~~~~-~~l~~~l~~-~~~~vv~k~~~~~~~i~~~L~~~-g~~~~~~~v~~~~~~~E~i 215 (241)
T PRK05990 160 GVLPE-EELRRRLAD-ADAAVIMKLGRNLDKVRRVLAAL-GLLDRALYVERATMANQRI 215 (241)
T ss_pred CCCCh-HHHHHHHhC-CCCEEEEEeCCcHHHHHHHHHHc-CCCCCEEEEEECCCCCeEE
Confidence 65332 223344444 44556666668999999999874 3223566779999999986
No 18
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase. This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis.
Probab=100.00 E-value=8.6e-34 Score=253.63 Aligned_cols=186 Identities=23% Similarity=0.217 Sum_probs=149.0
Q ss_pred EEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEccC
Q 023900 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDA 162 (275)
Q Consensus 83 l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS~~ 162 (275)
||+||+|||||++||++|+++|++||+|+++++. .++++.+..+++++.+++.+..+..+.+.+.+++|++||++ .+
T Consensus 1 l~iVG~GpG~~~~lT~~A~~~i~~AdvV~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vv~l-~~ 77 (239)
T TIGR01466 1 LYVVGIGPGAEELMTPEAKEALAEADVIVGYKTY--LDLIEDLIPGKEVVTSGMREEIARAELAIELAAEGRTVALV-SS 77 (239)
T ss_pred CEEEEeCCCChHHHHHHHHHHHHhCCEEEECccH--HHHHHhhCCCCEEEeCCChHHHHHHHHHHHHHhCCCCEEEE-ec
Confidence 6899999999999999999999999999997642 35666665555666666544445566677777889999999 59
Q ss_pred CCCCCCchHHHHHHHhhhCC--CCEEEEccchHHHHHHHhCCCCC-ccEEEEEEecCCCc-----hhHHHHHHhhcCCCe
Q 023900 163 GTPGISDPGTELAKLCVDEK--IPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPKHAR-----SRTERLMLSANEVKT 234 (275)
Q Consensus 163 GDP~iys~~~~l~~~l~~~g--i~veVIPGISS~~aaaA~lGipl-~~~~~v~~l~~~~~-----~~~~~l~~l~~~~~t 234 (275)
|||++||.+.++++.+.+.+ ++++++|||||+|+|+|++|+|| +++.++ +.|+. ...+.+..+++.+.+
T Consensus 78 GDP~~~~~~~~l~~~l~~~~~~~~v~viPGiSS~~aa~a~~g~p~~~~~~~i---s~~~~~~~~~~~~~~l~~~~~~~~~ 154 (239)
T TIGR01466 78 GDPGIYGMAALVFEALEKKGAEVDIEVIPGITAASAAASLLGAPLGHDFCVI---SLSDLLTPWPEIEKRLRAAAEADFV 154 (239)
T ss_pred CCCcccccHHHHHHHHHhcCCCCCEEEeCCccHHHHHHHHcCCCcccccEEE---ECCCCCCCchHHHHHHHHHhCCCcE
Confidence 99999999999999997764 59999999999999999999999 788777 44431 112234555556778
Q ss_pred EEEEcCC-----cCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 235 QIFYVPP-----HKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 235 lVl~~~~-----~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
+++|++. +++.++.+.|.+.++.+++++|++|+|+++|++
T Consensus 155 ~vl~~~~~~~~~~~~~~i~~~L~~~~~~~~~v~v~~~l~~~~E~i 199 (239)
T TIGR01466 155 IAIYNPRSKRRPEQFRRAMEILLEHRKPDTPVGIVRNAGREGEEV 199 (239)
T ss_pred EEEECCcccchhhhHHHHHHHHHhcCCCCCEEEEEEECCCCCeEE
Confidence 9999874 378888888887666689999999999999986
No 19
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=100.00 E-value=6.1e-34 Score=253.59 Aligned_cols=185 Identities=18% Similarity=0.262 Sum_probs=145.3
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC-----HHHHhhc-cCCCcEEe--cCCC-CH-------HHHH
Q 023900 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS-----GKLLQYY-NIKTPLLS--YHKF-NE-------SQRE 143 (275)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~-----~~lL~~~-~~~~~~i~--~~~~-~~-------~e~~ 143 (275)
+|+||+||+|||||++||++|+++|++||+|++++.+.. .+++..+ ..+++++. +++. +. ++..
T Consensus 1 m~~l~vVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (229)
T PRK05576 1 MGKLYGIGLGPGDPELLTVKAARILEEADVVYAPASRKGGGSLALNIVRPYLKEETEIVELHFPMSKDEEEKEAVWKENA 80 (229)
T ss_pred CCEEEEEEeCCCChHHHHHHHHHHHhcCCEEEEECCCCCchhHHHHHHHHhcCCCCEEEEeeCCCCCChHHHHHHHHHHH
Confidence 379999999999999999999999999999999854322 2344444 23334433 3322 11 2456
Q ss_pred HHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc----cEEEEEEecCCCc
Q 023900 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD----EFTFVGFLPKHAR 219 (275)
Q Consensus 144 ~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~----~~~~v~~l~~~~~ 219 (275)
+.+.+.+++|++|+++ .+|||++||++.++++.+.+.|++++|+|||||+|+|+|++|+||+ ++.++ |.|+
T Consensus 81 ~~i~~~~~~g~~V~~l-~~GDP~~y~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~ii---s~~~- 155 (229)
T PRK05576 81 EEIAAEAEEGKNVAFI-TLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAMGDESLAII---PATR- 155 (229)
T ss_pred HHHHHHHHcCCcEEEE-eCcCccccccHHHHHHHHHhCCCCEEEeCChhHHHHHHHHcCCCcccCCceEEEE---ECCC-
Confidence 6777778899999999 5999999999999999998878999999999999999999999998 34554 6664
Q ss_pred hhHHHHHHhhcCCCeEEEEcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 220 SRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 220 ~~~~~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
.+.+...++.++++|+|+..++..++.+.|.+. + .+++|++|||++||++
T Consensus 156 --~~~l~~~l~~~~~~vl~~~~~~~~~i~~~l~~~-~--~~v~v~e~l~~~~E~i 205 (229)
T PRK05576 156 --EALIEQALTDFDSVVLMKVYKNFALIEELLEEG-Y--LDALYVRRAYMEGEQI 205 (229)
T ss_pred --HHHHHHHhhcCCEEEEEecCCCHHHHHHHHHhc-C--CCEEEEEECCCCCeEE
Confidence 245556666778999999877777776666553 2 3999999999999987
No 20
>PRK10637 cysG siroheme synthase; Provisional
Probab=100.00 E-value=1.2e-33 Score=274.88 Aligned_cols=192 Identities=18% Similarity=0.222 Sum_probs=159.7
Q ss_pred CCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEec------CCCCHHHHHHHHHHHhh
Q 023900 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLK 151 (275)
Q Consensus 78 ~~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~------~~~~~~e~~~~i~~~l~ 151 (275)
+.+|+||+||+|||||++||++|+++|++||+|+++ .+..+.+++.+....+.+.. +..++++..+.+.+.+.
T Consensus 213 ~~~g~l~iVG~GpGdp~lLTl~A~~~L~~ADvV~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 291 (457)
T PRK10637 213 DHRGEVVLVGAGPGDAGLLTLKGLQQIQQADVVVYD-RLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQ 291 (457)
T ss_pred CCCcEEEEEEeCCCChHHHHHHHHHHHHcCCEEEEC-CCCCHHHHhhcccCCEEEEcCCCCCCCCcCHHHHHHHHHHHHh
Confidence 356999999999999999999999999999999994 56766676655444343322 22345677788888889
Q ss_pred CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEecCCCch-hHHH
Q 023900 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARS-RTER 224 (275)
Q Consensus 152 ~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~------~~~~v~~l~~~~~~-~~~~ 224 (275)
+|++|++|+ +|||++||++.++++++.+.|++++|||||||+|+|+|++|+||+ ++.++ +.|++. ....
T Consensus 292 ~G~~Vv~L~-sGDP~~yg~~~~l~~~l~~~gi~vevVPGISS~~aAaA~~g~pl~~~~~~~~~~vi---s~h~~~~~~~~ 367 (457)
T PRK10637 292 KGKRVVRLK-GGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLV---TGHLKTGGELD 367 (457)
T ss_pred CCCEEEEEe-CCCccccccHHHHHHHHHhCCCCEEEECCHhHHHHHHHHcCCCcccCCceeeEEEE---eCccCCCCccC
Confidence 999999994 999999999999999999889999999999999999999999994 44444 666532 1224
Q ss_pred HHHhhcCCCeEEEEcCCcCHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 225 LMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 225 l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
+..++....|+|+|++.++..++.+.|.+. ++++++++|++|+|+++|++
T Consensus 368 ~~~l~~~~~t~Vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~e~l~~~~E~i 418 (457)
T PRK10637 368 WENLAAEKQTLVFYMGLNQAATIQQKLIEHGMPADMPVALVENGTSVTQRV 418 (457)
T ss_pred HHHHhCCCCeEEEECCHhhHHHHHHHHHhcCCCCCCcEEEEEeCCCCCcEE
Confidence 677777889999999999999999999874 67789999999999999987
No 21
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=100.00 E-value=7.8e-33 Score=245.43 Aligned_cols=191 Identities=21% Similarity=0.263 Sum_probs=151.5
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCC----CCCHHHHhhccC-CCcE--EecCCCCH---------HHHH
Q 023900 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDT----RHSGKLLQYYNI-KTPL--LSYHKFNE---------SQRE 143 (275)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~----~~~~~lL~~~~~-~~~~--i~~~~~~~---------~e~~ 143 (275)
++++|+||+||||||+||+||+++|++||+|++|.+ ..++.+++.+-. +... +.+++..+ ++.+
T Consensus 1 ~~klygVGvGPGDPeLlTlkAi~~L~~adVi~~P~~~g~~slAr~Iv~~y~~~~~~~~~l~fPm~~~~~e~~~~~~~e~a 80 (234)
T COG2243 1 MGKLYGVGLGPGDPELLTLKAIRALKKADVVYVPSKKGKGSLAREIVEDYLTPGSRIVELHFPMTTDMREELEDAWEEAA 80 (234)
T ss_pred CCeEEEEecCCCChhhhhHHHHHHHhhCCEEEEecCCCccchHHHHHHHhcCCCceeeEEEeccCCchHHHHHHHHHHHH
Confidence 379999999999999999999999999999999832 234567766544 3332 23554322 3456
Q ss_pred HHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcc-EEEEEEecCCCchhH
Q 023900 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE-FTFVGFLPKHARSRT 222 (275)
Q Consensus 144 ~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~-~~~v~~l~~~~~~~~ 222 (275)
+++.+++.+|++|++++ .|||+|||++.++.+++...|+++|+||||||+++++|++|+|+.. -..+.++|.... .
T Consensus 81 ~~va~~l~~G~~VAf~~-lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVsS~~a~aa~~~~pL~~g~~~l~Vlp~t~~--~ 157 (234)
T COG2243 81 AEVAAELEAGRDVAFLT-LGDPTFYSTFMYLLERLRERGFEVEVVPGVSSFSACAARLGVPLVEGDDSLSVLPATRP--D 157 (234)
T ss_pred HHHHHHHHcCCeEEEEE-ccCccHHHHHHHHHHHhhccCCceEEeCCcchHHHHHHHhCCceeccCceeEEEeccCc--h
Confidence 77888899999999996 9999999999999999999999999999999999999999999972 233334566653 3
Q ss_pred HHHHHhhcCCCeEEEEcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 223 ~~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
..++..+...+++|+|+.+++..++.+.|.. .+.....+.+++++.++|+|
T Consensus 158 ~~~~~~l~~~d~~VvMK~~~~~~~i~~~l~~-~g~~~~~~~v~R~~m~~e~i 208 (234)
T COG2243 158 EELERALADFDTAVVMKVGRNFEKLRRLLAK-LGLLDRAVYVERATMAGEKI 208 (234)
T ss_pred hhHHhHHhhCCeEEEEecCCcHHHHHHHHHh-cCCCceEEEEeecCCCCcEE
Confidence 5566666678999999999988887777554 33345566899999999987
No 22
>PRK05991 precorrin-3B C17-methyltransferase; Provisional
Probab=100.00 E-value=1.3e-32 Score=248.20 Aligned_cols=187 Identities=19% Similarity=0.260 Sum_probs=139.9
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHH--HHHHHHHHhhCCCeE
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQ--REQTVLNRLKQGEIV 156 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e--~~~~i~~~l~~G~~V 156 (275)
|+|+||+||+|||||++||++|+++|++||+|++++ ++++.+............+.++ ....+++.+.+|++|
T Consensus 1 m~~~l~iVG~GpG~p~~lT~~a~~~l~~AdvV~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V 75 (250)
T PRK05991 1 MSGRLFVIGTGPGNPEQMTPEALAAVEAATDFFGYG-----PYLDRLPLRADQLRHASDNREELDRAGAALAMAAAGANV 75 (250)
T ss_pred CCceEEEEEeCCCChhhhhHHHHHHHHhCCEEEEcH-----HHHHhhhccccccccCCCCHHHHHHHHHHHHHHHCCCeE
Confidence 568999999999999999999999999999999964 3455443211111122222222 222345566789999
Q ss_pred EEEccCCCCCCCchHHHHHHHhhh-----CCCCEEEEccchHHHHHHHhCCCCCc-cEEEEEEecCCCch-----hHHHH
Q 023900 157 ALISDAGTPGISDPGTELAKLCVD-----EKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLPKHARS-----RTERL 225 (275)
Q Consensus 157 v~LS~~GDP~iys~~~~l~~~l~~-----~gi~veVIPGISS~~aaaA~lGipl~-~~~~v~~l~~~~~~-----~~~~l 225 (275)
|+|+ +|||++|+++.++.+.+.+ .+++++|+|||||+|+|+|++|+||+ ++.++ +.|+.. ..+.+
T Consensus 76 v~l~-~GDP~~~~~~~~l~~~~~~g~~~~~~~~v~vvPGISS~~aa~a~~g~p~~~~~~~~---s~~~~~~~~~~l~~~l 151 (250)
T PRK05991 76 CVVS-GGDPGVFAMAAAVCEAIENGPAAWRAVDLTIVPGVTAMLAVAARIGAPLGHDFCAI---SLSDNLKPWELIEKRL 151 (250)
T ss_pred EEEe-CCCchhhhhHHHHHHHHHhcccccCCceEEEECChHHHHHHHHHhCCCCCCCCEEe---ecccCCCCHHHHHHHH
Confidence 9995 9999999999999999874 35899999999999999999999994 77777 444311 12334
Q ss_pred HHhhcCCCeEEEEcCC-----cCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 226 MLSANEVKTQIFYVPP-----HKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 226 ~~l~~~~~tlVl~~~~-----~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
+.....+.++|+|++. +++.+.++.|.+.+.++.+++|++|+|+++|++
T Consensus 152 ~~~~~~~~~~vl~~~~~~~~p~~l~~~~~~L~~~~~~~~~v~v~~~lg~~dE~i 205 (250)
T PRK05991 152 RLAAEAGFVIALYNPISRARPWQLGEAFDLLREHLPATVPVIFGRAAGRPDERI 205 (250)
T ss_pred HhhcCCCeEEEEECCccccchhhHHHHHHHHHhcCCCCCEEEEEEeCCCCCcEE
Confidence 4455567889999653 356666677777666789999999999999987
No 23
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=100.00 E-value=1.2e-32 Score=241.18 Aligned_cols=182 Identities=21% Similarity=0.222 Sum_probs=138.2
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhcc-CCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEc
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN-IKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~-~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS 160 (275)
+||+||+|||||++||+||+++|++||+|++++ +. .++++.+. .+++.+..+ .++..+.+. .+.+|++|+++
T Consensus 1 ~l~vVG~GpG~~~~lT~~a~~~l~~advv~~~~-~~-~~~~~~~~~~~~~~~~~~---~~~~~~~i~-~~~~g~~V~~l- 73 (210)
T PRK05787 1 MIYIVGIGPGDPEYLTLKALEAIRKADVVVGSK-RV-LELFPELIDGEAFVLTAG---LRDLLEWLE-LAAKGKNVVVL- 73 (210)
T ss_pred CEEEEEeCCCChHHhhHHHHHHHHhCCEEEEcH-hH-HHHHHHhccCccEEecCC---HHHHHHHHH-HhhCCCcEEEE-
Confidence 489999999999999999999999999999964 33 34444443 233333322 234444454 56789999999
Q ss_pred cCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEecCCCchhH-HHHHHhhcCCCeEEEEc
Q 023900 161 DAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRT-ERLMLSANEVKTQIFYV 239 (275)
Q Consensus 161 ~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~~~-~~l~~l~~~~~tlVl~~ 239 (275)
.+|||++||.+..+.+.+.. +++++++|||||+|+|+|++|+||+++.++ +.|+++.. +.+..+++.+.++++++
T Consensus 74 ~~GDP~~~~~~~~~~~~~~~-~~~veviPGiSs~~aaaa~~g~~l~~~~~i---s~~~~~~~~~~l~~~~~~~~~~v~l~ 149 (210)
T PRK05787 74 STGDPLFSGLGKLLKVRRAV-AEDVEVIPGISSVQYAAARLGIDMNDVVFT---TSHGRGPNFEELEDLLKNGRKVIMLP 149 (210)
T ss_pred ecCCccccccHHHHHHHhcc-CCCeEEEcCHHHHHHHHHHhCCCHHHcEEE---eecCCCcchHHHHHHHHcCCeEEEEc
Confidence 49999999987777766543 489999999999999999999999998877 44543211 34566665566777777
Q ss_pred CC-cCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 240 PP-HKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 240 ~~-~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
.+ ++..++.+.|.+....+++++|++|+|+++|++
T Consensus 150 ~~~~~~~~i~~~L~~~g~~~~~~~v~~~l~~~~E~i 185 (210)
T PRK05787 150 DPRFGPKEIAAELLERGKLERRIVVGENLSYPDERI 185 (210)
T ss_pred CCCCCHHHHHHHHHhCCCCCcEEEEEEeCCCCCeEE
Confidence 44 578899988887433689999999999999987
No 24
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-32 Score=240.22 Aligned_cols=179 Identities=19% Similarity=0.228 Sum_probs=140.6
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccC--CCcEEecCCCCHHHHHHHHHHHhhCCCeEEEE
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNI--KTPLLSYHKFNESQREQTVLNRLKQGEIVALI 159 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~--~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~L 159 (275)
++++||+||||+++||.+|+++|++||+|+|.+ +.|+.+.. +++.+.+......+..+.+.+..+ |++||+|
T Consensus 1 ~I~vVGiGp~~~~~Lt~~A~~~I~~A~vV~G~k-----r~L~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~-g~~v~VL 74 (210)
T COG2241 1 MITVVGIGPGGPEGLTLAAIEAIRRADVVAGSK-----RHLELLPPLIKAERIIWPYPFDAESLEEILAERK-GRDVVVL 74 (210)
T ss_pred CEEEEEeCCCChhhhcHHHHHHHHhCCEEeecH-----HHHHhhhccccceEEEeccccchHHHHHHHHHhC-CCCeEEE
Confidence 489999999999999999999999999999964 34555543 244555544333445566655544 8999999
Q ss_pred ccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEecCCCchhHHHHHHhhcCCCeEEEEc
Q 023900 160 SDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYV 239 (275)
Q Consensus 160 S~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~~~~~l~~l~~~~~tlVl~~ 239 (275)
.+|||++||.+..+.+.+.. .+++|||||||+|+|+|++|++|+++.++ +.|++. .+.+..+...+..+++..
T Consensus 75 -asGDP~f~G~g~~l~~~~~~--~~v~iIPgiSS~q~a~ARlg~~~~~~~~i---slHgr~-~~~l~~~~~~~~~~vil~ 147 (210)
T COG2241 75 -ASGDPLFSGVGRLLRRKFSC--EEVEIIPGISSVQLAAARLGWPLQDTEVI---SLHGRP-VELLRPLLENGRRLVILT 147 (210)
T ss_pred -ecCCcchhhhHHHHHHhcCc--cceEEecChhHHHHHHHHhCCChHHeEEE---EecCCC-HHHHHHHHhCCceEEEeC
Confidence 59999999999999888765 47999999999999999999999999998 556543 356666666666666666
Q ss_pred CCc-CHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 240 PPH-KLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 240 ~~~-~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
+.. ...++.+.|.+. ++ +++++|+||||++|||+
T Consensus 148 ~~~~~P~~IA~~L~~~G~~-~~~~~VlE~L~~~~Eri 183 (210)
T COG2241 148 PDDFGPAEIAKLLTENGIG-DSRVTVLENLGYPDERI 183 (210)
T ss_pred CCCCCHHHHHHHHHhCCCC-CceEEEEcccCCCchhh
Confidence 554 466777777774 55 79999999999999986
No 25
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=100.00 E-value=3.1e-32 Score=238.41 Aligned_cols=180 Identities=19% Similarity=0.206 Sum_probs=136.8
Q ss_pred EEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEccCCC
Q 023900 85 LVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGT 164 (275)
Q Consensus 85 iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS~~GD 164 (275)
+||+|||||++||+||+++|++||+|+++. +.. +.+..+......+.....+.++..+.+.+.++ |++|++++ +||
T Consensus 1 iVG~GpG~~~~lT~~a~~~L~~advv~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~vv~l~-~GD 76 (204)
T TIGR02467 1 VVGIGPGGPELLTPAAIEAIRKADLVVGGE-RHL-ELLAELIGEKREIILTYKDLDELLEFIAATRK-EKRVVVLA-SGD 76 (204)
T ss_pred CEEeCCCChhhcCHHHHHHHHhCCEEEech-hhH-HHHhhhcCCceEeccCcCCHHHHHHHHHHhcC-CCCEEEEe-cCC
Confidence 699999999999999999999999999964 332 33443322222222122356777788877766 99999995 999
Q ss_pred CCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEecCCCchhHH-HHHHhhcCCCeEEEEcCC-c
Q 023900 165 PGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTE-RLMLSANEVKTQIFYVPP-H 242 (275)
Q Consensus 165 P~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~~~~-~l~~l~~~~~tlVl~~~~-~ 242 (275)
|++||++.++++.+.+ .+++++|||||+|+|+|++|+||+++.+++. |++.... .+..+.. ..++++|+.+ +
T Consensus 77 P~~~~~~~~l~~~~~~--~~v~iiPGiSs~~~a~a~~g~~l~~~~~is~---~~~~~~~~~~~~l~~-~~~~vvl~~~~~ 150 (204)
T TIGR02467 77 PLFYGIGRTLAERLGK--ERLEIIPGISSVQYAFARLGLPWQDAVVISL---HGRELDELLLALLRG-HRKVAVLTDPRN 150 (204)
T ss_pred CcccccHHHHHHhCCC--CcEEEeCChHHHHHHHHHcCCChhhCeEEEe---eCCCCcHHHHHHHhc-CCcEEEEeCCCC
Confidence 9999999999999865 3799999999999999999999999988843 4332111 3444444 4455555554 6
Q ss_pred CHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 243 KLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 243 ~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
+..++.+.|.+. +++.++++|++++|+++|++
T Consensus 151 ~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i 183 (204)
T TIGR02467 151 GPAEIARELIELGIGGSYELTVGENLGYEDERI 183 (204)
T ss_pred CHHHHHHHHHHCCCCCCeEEEEEcccCCCCeEE
Confidence 789999999875 66556999999999999987
No 26
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=99.98 E-value=2.1e-31 Score=243.05 Aligned_cols=192 Identities=44% Similarity=0.577 Sum_probs=181.5
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEcc
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISD 161 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS~ 161 (275)
++|+|+++.||.+.+|+||+++|++||+|+++|+|++..++..++..++.+.++.+++.+..+.+++.+++|++|+++||
T Consensus 1 mLyvv~TPIGNl~Dit~Ral~~L~~~d~i~~EDTR~t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~g~~valvSD 80 (276)
T TIGR00096 1 LLYVVTTPIGNLEDITRRALELLACVDLFAEEDTRTSKLLLHLGIIATPKAFHIDNEFQEKQNLLAAKLEIGNNIAVSSD 80 (276)
T ss_pred CEEEECCCCcCHHHHhHHHHHHHHhCCEEEecCchhHHHHHHhcCCCCceEEEecccHhHHHHHHHHHHHcCCcEEEEec
Confidence 48999999999999999999999999999999999999999999988888899999998999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEecCCCchhHHHHHHhhcCCCeEEEEcCC
Q 023900 162 AGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPP 241 (275)
Q Consensus 162 ~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~~~~~l~~l~~~~~tlVl~~~~ 241 (275)
.|.|++.++|..+++.+.+.|++|.++||+|++.+|.+..|++-+.|.|.||+|.+..+|.+.++.+.....|+|+|+++
T Consensus 81 AG~P~ISDPG~~LV~~~~~~~i~v~~ipG~sA~~~Al~~SG~~~~~f~F~GFlp~k~~~r~~~l~~l~~~~~t~ifyEsp 160 (276)
T TIGR00096 81 AGPPLISDPGHLLVACREKANIIVVPLPGAAALTAALCASGPATDRFFFGGFLPKKSKRRQALKAYIAEERTTVFFYESH 160 (276)
T ss_pred CCCCCcCCccHHHHHHHHHCCCeEEcCChHHHHHHHHHhcCCCCCceEEeeeCCCChHHHHHHHHHHhCCCCeEEEEECc
Confidence 99999999999999999999999999999999999999999999999999999988877777788888889999999999
Q ss_pred cCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 242 HKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 242 ~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
|++.++++.+.+.++ +++++++.+||+.+|++
T Consensus 161 ~Rl~~~L~~l~~~~g-~r~i~~arELTK~~E~~ 192 (276)
T TIGR00096 161 HRLLTTLTDLNVFLG-SERFVGAAELTKKESEY 192 (276)
T ss_pred HhHHHHHHHHHHhcC-CceEEEEEecCCCceEE
Confidence 999999999877555 89999999999999986
No 27
>PRK08284 precorrin 6A synthase; Provisional
Probab=99.98 E-value=3.2e-31 Score=239.66 Aligned_cols=182 Identities=13% Similarity=0.122 Sum_probs=133.7
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC--------HHHHhhcc--CCCcEEecC--CCCH---------
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYN--IKTPLLSYH--KFNE--------- 139 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~--------~~lL~~~~--~~~~~i~~~--~~~~--------- 139 (275)
.+||+||+||||||+||+||+++|++||+|++|++... .++++.+. ++++++.++ +.+.
T Consensus 2 ~kly~VGvGPGDPeLLTlkA~r~L~~advV~~p~~~~~~~~la~~a~~iv~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~ 81 (253)
T PRK08284 2 RRLLLIGIGAGDPDHLTLQAIKALNRADVFFVPDKGADKDDLVALRREICARHITGPGYRVVEFDDPVRDRAPDDYRAAV 81 (253)
T ss_pred cEEEEEEecCCChhHhhHHHHHHHHhCCEEEEECCCCCchhHHHHHHHHHHHHhcCCCceEEecCCCCcccchhhhhhhh
Confidence 57999999999999999999999999999999865322 33444432 345555443 3221
Q ss_pred --------HHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhC---CCCEEEEccchHHHHHHHhCCCCCccE
Q 023900 140 --------SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE---KIPVVPIPGASAFVAALSASGLATDEF 208 (275)
Q Consensus 140 --------~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~---gi~veVIPGISS~~aaaA~lGipl~~~ 208 (275)
+...+.|.+.+++|++|+++ ..|||++||++.++.+.+.+. |+++||||||||+++++|++|+||++.
T Consensus 82 ~~~~~~~~~~~~~~i~~~l~~g~~Vv~l-~~GDP~~ys~~~~l~~~l~~~~~~~i~vevVPGISS~~aaaA~lg~pl~~~ 160 (253)
T PRK08284 82 DDWHAARAALYERLIAEELPDGGTGAFL-VWGDPSLYDSTLRILERVRARGRVAFDYEVIPGITSVQALAARHRIPLNRI 160 (253)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCcEEEE-eCCCcchhhHHHHHHHHHHhhccCCCcEEEECChhHHHHHHHHcCCChhcC
Confidence 11245688888999999999 599999999999999999864 899999999999999999999999864
Q ss_pred E-EEEEecCCCchhHHHHHHhhcCCCeEEEEcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 209 T-FVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 209 ~-~v~~l~~~~~~~~~~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
. -+.+++.+. .. ..+....+++|+|+.+++..+. |. ..+.++++++|+|++||+|
T Consensus 161 ~~~l~ii~g~~---l~--~~l~~~~~~vvv~k~~~~~~~~---L~---~~~~~v~v~e~l~~p~E~I 216 (253)
T PRK08284 161 GEPVHITTGRR---LA--EGWPAGVDNVVVMLDGECSFRR---LD---DPDLEIWWGAYLGTPDEIL 216 (253)
T ss_pred CceEEEEecCc---hH--HHHHhcCCcEEEEECCcCCHHH---Hc---CCCCEEEEEecCCCCCeEE
Confidence 1 111234431 11 1233445677777776633332 22 2467999999999999987
No 28
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=99.97 E-value=9.7e-31 Score=236.00 Aligned_cols=179 Identities=15% Similarity=0.147 Sum_probs=133.0
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC--------HHHHhhcc--CCCcEEe--cCCCCH----------
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYN--IKTPLLS--YHKFNE---------- 139 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~--------~~lL~~~~--~~~~~i~--~~~~~~---------- 139 (275)
+||+||+||||||+||+||+++|++||+|+++.+... .++++.+. ++++++. ++|...
T Consensus 2 ~l~~VG~GPGDPeLLTlkA~r~L~~AdvV~~p~~~~~~~~l~~~a~~i~~~~~~~~~~~i~~~~~pm~~~~~~~y~~~~~ 81 (249)
T TIGR02434 2 TILLIGIGAGDPEQLTLQAVDALNHADVFFVLDKGEQKSDLVALRREICARYVTAPGYRIVEVDDPERDAGADDYRAAVD 81 (249)
T ss_pred EEEEEEeCCCChHHhHHHHHHHHHhCCEEEEECCCCCchhHHHHHHHHHHHHhCCCCcEEEEecCCCcCCccchhhhhHH
Confidence 7999999999999999999999999999999744332 23343322 2334443 344211
Q ss_pred -------HHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhh---CCCCEEEEccchHHHHHHHhCCCCCccEE
Q 023900 140 -------SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD---EKIPVVPIPGASAFVAALSASGLATDEFT 209 (275)
Q Consensus 140 -------~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~---~gi~veVIPGISS~~aaaA~lGipl~~~~ 209 (275)
++.++.|.+.+++|++||++ .+|||++||++.++.+.+.+ .+++++|||||||+++++|++|+||++..
T Consensus 82 ~~~~~~~~~~a~~i~~~~~~g~~Vv~L-~~GDP~~yst~~~l~~~l~~~~~~~~~vevVPGISS~~aaaA~lg~pl~~~~ 160 (249)
T TIGR02434 82 DWHAQRADIWAQAIAEELGDDGTGAFL-VWGDPSLYDSTLRILERLRALGGVPFDYEVIPGITSVQALTARHRIPLNRIG 160 (249)
T ss_pred HhhhhHHHHHHHHHHHHHhCCCcEEEE-eCCCchHhhhHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHhCCCcccCC
Confidence 13466788888999999999 59999999999999999876 36899999999999999999999998531
Q ss_pred --EEEEecCCCchhHHHHHHh-hcCCCeEEEEcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 210 --FVGFLPKHARSRTERLMLS-ANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 210 --~v~~l~~~~~~~~~~l~~l-~~~~~tlVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
+. +++.+ .+... +...+++|+|+..++..+.++ + .+.++++++|+|++||+|
T Consensus 161 ~~l~-v~~g~------~l~~~~l~~~~~~vilk~~~~~~~~l~---~---~~~~~~v~e~lg~pdE~I 215 (249)
T TIGR02434 161 EPVQ-ITTGR------RLAEGGFPEGDTVVVMLDGEQAFQRVD---P---EDIDIYWGAYLGTPDEIL 215 (249)
T ss_pred ceEE-EEecc------chhhccccCCCeEEEEECCccCHHHhc---C---CCCEEEEEEeCCCCCeEE
Confidence 22 12332 12222 345678888888777333221 1 367999999999999987
No 29
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=99.97 E-value=1.3e-30 Score=236.29 Aligned_cols=189 Identities=19% Similarity=0.177 Sum_probs=138.6
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC------HHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCe
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS------GKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~------~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~ 155 (275)
+||+||+||||||+||+||+++|++||+|+++. +.+ .+.++.+. +++.........++..+.+++.+++ ++
T Consensus 1 ~l~~VG~GPGd~~llTl~a~~~L~~advV~~~~-~~s~l~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~ii~~~~~-~~ 77 (257)
T TIGR00522 1 MLYLIGLGLYDENDISVKGLEAIKKADEVYAEF-YTSKLLGSSIEEIEEFF-GKRVVVLERSDVEENSFRLIERAKS-KD 77 (257)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEec-cchhhccccHHHHHHHh-CCcccccCHHHHHHHHHHHHHHhcC-CC
Confidence 489999999999999999999999999999963 221 11222221 2222222111123446677777754 88
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccE---EEEEEecCCCchh---HHHHHHhh
Q 023900 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARSR---TERLMLSA 229 (275)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~---~~v~~l~~~~~~~---~~~l~~l~ 229 (275)
|+++ .+|||++|+++.+++.++.+.|++++|||||||+++|+|++|+|++.+ .-+.+.+.|++.. ...++++.
T Consensus 78 Vv~l-~~GDP~i~~~~~~l~~~l~~~~i~vevIPGiSs~~aaaa~~g~~lt~~g~~~~v~~~s~~~~~~~~~~~~~~~l~ 156 (257)
T TIGR00522 78 VALL-VAGDPMVATTHTDLKLEAKRKGIETRIIHGASISSAVCGLTGLQLYKFGKTATIVFFTDNYRPQTPYNVIKENRK 156 (257)
T ss_pred EEEE-ECCcCcccCCHHHHHHHHHHCCCeEEEECcHhHHHHHHHHcCCCcccCCCcEEEEEecCCcCCCCHHHHHHHHHh
Confidence 9999 599999999999999999999999999999999999999999999843 2233446666421 24567777
Q ss_pred cCCCeEEEEcCCc-------------CHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 230 NEVKTQIFYVPPH-------------KLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 230 ~~~~tlVl~~~~~-------------~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
....|+|||+... ++.++.+.|.+. ++++++++|++|+|++||++
T Consensus 157 ~~~~Tlvll~~~~~~~~~M~~~~~~~~l~~~~~~l~~~g~~~~tpv~vv~~~~~~de~i 215 (257)
T TIGR00522 157 IGLHTLVLLDIHPKENRAMTIGEGLENLLEEEEKRKTGAITPDTYAVVIARAGSGKPVV 215 (257)
T ss_pred cCCCcEEEEecccCcccccCHHHHHHHHHHHHHHHhhcCCCCCCeEEEEEECCCCCceE
Confidence 7778999984332 233344445443 68899999999999999987
No 30
>PRK04160 diphthine synthase; Provisional
Probab=99.97 E-value=2.9e-29 Score=227.39 Aligned_cols=190 Identities=19% Similarity=0.164 Sum_probs=127.3
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCC--C---HHHHhhccCCCcEEecCCCCHHHHHHHHH-HHhhCCCe
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH--S---GKLLQYYNIKTPLLSYHKFNESQREQTVL-NRLKQGEI 155 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~--~---~~lL~~~~~~~~~i~~~~~~~~e~~~~i~-~~l~~G~~ 155 (275)
+||+||+||||||+||+||+++|++||+|++++... . ...+..+. +++.+.......++..+.+. +..+ +++
T Consensus 1 ~l~vVG~GpG~pd~lT~~a~~~L~~advv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 78 (258)
T PRK04160 1 MLYFIGLGLYDERDITLKGLEALRNADKVYAEFYTSILMGTTIEKLEELI-GKEIIVLDREDVEQESEKIILEEAK-EKN 78 (258)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEecccCccccccHHHHHHHh-CCceeecCHHHHHHHHHHHHHHHHc-CCC
Confidence 489999999999999999999999999999954210 1 11222221 12222222112234445454 4444 589
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccE---EEEEEecCCC---chhHHHHHHhh
Q 023900 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHA---RSRTERLMLSA 229 (275)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~---~~v~~l~~~~---~~~~~~l~~l~ 229 (275)
||+++ +|||++|+++.++++.+++.+++++++|||||+++|+|++|+|...+ .-+.+...+. +.....++.+.
T Consensus 79 Vv~L~-sGDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~~~~~g~~~s~~~~~~~~~~~~~~~~i~~~~~ 157 (258)
T PRK04160 79 VAFLT-AGDPMVATTHVDLRLEAKKRGIEVRVIHGVSIYSAAISLTGLQNYKFGKSVTVPFPYGNFFPESPYDVIKDNLE 157 (258)
T ss_pred EEEEe-CCCCccccCHHHHHHHHHHCCCcEEEECChhHHHHHHHHhCCCcccCCceEEEccCcCCcCCCCHHHHHHHHHh
Confidence 99994 99999999999999999999999999999999999999999997654 1110101111 00112344555
Q ss_pred cCCCeEEEEc---C--CcCHHHHHHHHHh-------h-cCCCcEEEeEeccCCcCccc
Q 023900 230 NEVKTQIFYV---P--PHKLLQFLEETSL-------L-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 230 ~~~~tlVl~~---~--~~~~~~i~~~L~e-------~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
....+++++. . ......+.+.|.+ + ++++++++|++|+|+++|++
T Consensus 158 ~~~~~~vll~~~~~~~~~~~~~~~~~L~~~~~~l~~g~~~~~~~v~V~e~l~~~~E~i 215 (258)
T PRK04160 158 RGLHTLVLLDIKADGRYMTANEALELLLELEEKRGEGVISEDTLAVVVARAGSPDPVV 215 (258)
T ss_pred cCCCcEEEEEeccCCcccCHHHHHHHHHHHHHHhcccccCCCCEEEEEEecCCCCceE
Confidence 5567888864 1 1223333333323 2 55699999999999999987
No 31
>KOG1527 consensus Uroporphyrin III methyltransferase [Coenzyme transport and metabolism]
Probab=99.96 E-value=7.4e-30 Score=234.46 Aligned_cols=190 Identities=22% Similarity=0.266 Sum_probs=162.1
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCC------CCHHHHHHHHHHHhhCC
Q 023900 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK------FNESQREQTVLNRLKQG 153 (275)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~------~~~~e~~~~i~~~l~~G 153 (275)
.|+||+||.|||+|++||++|+++|++||++++ |+.++.++|+.+.++++.+...+ ..|+|..+...+.+.+|
T Consensus 255 ~G~i~LvGsGPGsp~lLT~~A~~~I~sAD~~La-DkLVp~avL~Lipp~t~lfia~KfpGna~raQ~Elh~~~l~~l~~G 333 (506)
T KOG1527|consen 255 LGDIYLVGSGPGSPELLTLKAVRVIQSADLLLA-DKLVPNAVLELIPPDTRLFIAGKFPGNASRAQEELHELLLNFLEAG 333 (506)
T ss_pred cCcEEEEccCCCChhheeHHHHHHHhhcceehh-hhcccHHHHhhcCCCCceEEeecCCCchhHHHHHHHHHHHHHHhCC
Confidence 388999999999999999999999999999999 67899999999998888654322 24677888889999999
Q ss_pred CeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEecCCCchhHHHHHH
Q 023900 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSRTERLML 227 (275)
Q Consensus 154 ~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~------~~~~v~~l~~~~~~~~~~l~~ 227 (275)
..||+| +.|||.+||+|.++...+.++|+...|+|||||..++++.+|||.+ .+.| ++++++...-....
T Consensus 334 ~~VVRL-KqGDPyifGRGGEE~~Ff~qhGy~p~ViPGIssal~~~~~agIP~ThRgvAdqvl~---cTGtgrKG~~p~ip 409 (506)
T KOG1527|consen 334 ATVVRL-KQGDPYIFGRGGEEMDFFQQHGYRPQVIPGISSALGIAAEAGIPLTHRGVADQVLF---CTGTGRKGGTPAIP 409 (506)
T ss_pred CEEEEe-cCCCceeecCCchhhhhHHhCCceeEeccchhhhhhhhHhcCCCcccccccceEEE---EeccCCCCCCCCcc
Confidence 999999 8999999999999999999999999999999999999999999997 2233 35555321111122
Q ss_pred hhcCCCeEEEEcCCcCHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 228 SANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 228 l~~~~~tlVl~~~~~~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
......|.|+||.-|+++-++..|+++ |+.++|++++|+.+.|+||.
T Consensus 410 ~fvp~~TtVflMaLhrl~~L~q~L~~hGwp~d~Pa~ivERgscPdQR~ 457 (506)
T KOG1527|consen 410 AFVPDTTTVFLMALHRLPSLAQKLMDHGWPSDTPAVIVERGSCPDQRT 457 (506)
T ss_pred ccCCCceeEeeehhcchHHHHHHHHhcCCCCCCCeeeEeccCCchHHH
Confidence 233467999999999999999999997 99999999999999999985
No 32
>PTZ00175 diphthine synthase; Provisional
Probab=99.96 E-value=9.4e-28 Score=218.87 Aligned_cols=188 Identities=21% Similarity=0.245 Sum_probs=139.7
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC------HHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCe
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS------GKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~------~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~ 155 (275)
+||+||+|||||++||+||+++|++||+|+++. +++ .+.+..+. +++.+.......++..+.+++.++ +++
T Consensus 2 mlylVG~GpGdp~lLTlkal~~L~~ADvV~~d~-~ts~l~~~~~~~l~~~~-gk~~~~~~r~~~e~~~~~ii~~a~-~~~ 78 (270)
T PTZ00175 2 MLYIIGLGLGDEKDITVKGLEAVKSADVVYLES-YTSILINSNKEKLEEFY-GKPVIEADREMVEEGCDEILEEAK-EKN 78 (270)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEec-ccchhccCCHHHHHHhc-CCeeEecCccCHHHHHHHHHHHhC-CCC
Confidence 699999999999999999999999999999964 321 12232221 234433333333444566777776 688
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEE---EEEEecCCCch---hHHHHHHhh
Q 023900 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFT---FVGFLPKHARS---RTERLMLSA 229 (275)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~---~v~~l~~~~~~---~~~~l~~l~ 229 (275)
||++ ..|||++|+++.+++.++.+.|+++++|||+|+++++ +.+|++.+.|- -+.+.+.|+.. -...|+++.
T Consensus 79 Vv~L-~~GDP~i~~t~~~l~~~~~~~gi~vevIPGvSi~sA~-~~~Gl~~~~fg~~~sv~~~t~~~~~~s~~~~i~~n~~ 156 (270)
T PTZ00175 79 VAFL-VVGDPFCATTHTDLYLRAKKKGIEVEVIHNASIMNAI-GCTGLQLYRFGETVSIPFFTETWKPDSFYDKIKANRD 156 (270)
T ss_pred EEEE-ECCCCCccCCHHHHHHHHHHCCCcEEEECCcCHHHHH-hhcCCCcCCCCceEEEEEEeCCCCCCChhHHHHHHHH
Confidence 9999 5999999999999999999999999999999977666 77999998541 12234555432 123688888
Q ss_pred cCCCeEEE------------------------EcCC----cCHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 230 NEVKTQIF------------------------YVPP----HKLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 230 ~~~~tlVl------------------------~~~~----~~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
.+.+|+|+ ||+. +++.++.+.+.++ ++++++++++.++|+++|+|
T Consensus 157 ~glhTl~lldi~~~~~~~~~~~~~~~~~~~~~~M~~~~a~~~l~~i~~~~~~~~~~~~t~~v~v~r~g~~~q~i 230 (270)
T PTZ00175 157 NGLHTLCLLDIKVKERSVENLMKGRKIYEPPRYMTINQAIEQLLEVEEKKGGGVIAEDTLVVGVARVGSDDQQI 230 (270)
T ss_pred cCCceEEEEeeeccccchhhhhccccccCCCcCCCHHHHHHHHHHHHHHHhcCCCCCCCeEEEEEECCCCCceE
Confidence 88899999 7763 3344444444443 78899999999999999986
No 33
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=6.1e-17 Score=143.86 Aligned_cols=190 Identities=22% Similarity=0.213 Sum_probs=133.7
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCH---HHHhhcc--CCCcEEecCCCCHHHHHHHHHHHhhCCCeE
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG---KLLQYYN--IKTPLLSYHKFNESQREQTVLNRLKQGEIV 156 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~---~lL~~~~--~~~~~i~~~~~~~~e~~~~i~~~l~~G~~V 156 (275)
++|+||.|+.|...+|+++++++++||.|+++ .+++. ..++.+. .+++++.....+.++.-+.|++.++++ +|
T Consensus 1 mL~lVGlGL~d~~diTl~gleavr~~d~Vy~E-~YTS~~~~~~~e~le~~~gkev~~~~R~dlE~~~~~il~~a~~~-~V 78 (260)
T COG1798 1 MLYLVGLGLYDEGDITLKGLEAVRKADRVYAE-FYTSILLGSNLEKLEELIGKEVILLDREDLEENSRSILDRAKDK-DV 78 (260)
T ss_pred CeEEEEeccCccCceeHHHHHHHHhCCEEEEE-eeecccccchHHHHHHHhCCceEeccHHHHhhcchhHHHHHhcC-CE
Confidence 48999999999999999999999999999995 35421 1122221 146666554333333345688877765 59
Q ss_pred EEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEecCCCch-----hHHHH-HHhhc
Q 023900 157 ALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARS-----RTERL-MLSAN 230 (275)
Q Consensus 157 v~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~-----~~~~l-~~l~~ 230 (275)
++++ .|||++.-+...|+-+..++|++++||||+|-+++++..+|+....|--...+|.+++. -.+.+ ++...
T Consensus 79 all~-~GDpmvATTH~~L~~~A~~~Gi~v~vIh~~Si~~Aa~g~tGL~~YkFG~~vTip~~~~~~~p~s~yd~Ik~N~~~ 157 (260)
T COG1798 79 ALLV-AGDPMVATTHVDLRIEAKRRGIEVRVIHGASIINAAIGLTGLQNYKFGKTVTLPFPSENFFPTSPYDVIKENLER 157 (260)
T ss_pred EEEe-cCCcceehhHHHHHHHHHHcCCcEEEEcccHHHHHHhhhhhhheeccCCceEecccccCcCCCcHHHHHHHhhhc
Confidence 9995 99999999999999999999999999999999999999999988765111112333211 11222 44445
Q ss_pred CCCeEEEEcCC--c---CHHHHHHHHHh--------hcCCCcEEEeEeccCCcCccc
Q 023900 231 EVKTQIFYVPP--H---KLLQFLEETSL--------LFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 231 ~~~tlVl~~~~--~---~~~~i~~~L~e--------~~~~~~~v~V~e~Lt~~~E~i 274 (275)
+=+|+++++-. . ...+-++.|++ .+.+++.++++.++|.++|.|
T Consensus 158 GLHTl~lLDi~~~~r~Mt~~ea~~~LLe~e~~~~~~~~~~d~~~vvvaR~Gs~~~~v 214 (260)
T COG1798 158 GLHTLVLLDIKEDERYMTANEALELLLEAEERRGRGVLTEDTLAVVVARAGSGDEVV 214 (260)
T ss_pred CccceEEEEecccccccCHHHHHHHHHHHHHHhcCCCcCCCceEEEEEecCCCCceE
Confidence 56788875422 1 13344444433 145799999999999999976
No 34
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=99.34 E-value=3.2e-11 Score=111.61 Aligned_cols=183 Identities=13% Similarity=0.137 Sum_probs=130.0
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEE-ecC----CCCH-----HHHHHHHHH
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLL-SYH----KFNE-----SQREQTVLN 148 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i-~~~----~~~~-----~e~~~~i~~ 148 (275)
|.++|.+||.|+|+.+.||+.-.++|+++|-++. .+.- ..+++.+......+ .|. .+++ +.++..+.+
T Consensus 1 mah~ItvVGLG~g~~d~L~lGi~k~lknqd~ly~-RTkd-HPviE~l~~e~~~f~~fD~iYE~heqFe~VYd~I~~~Lve 78 (488)
T COG3956 1 MAHTITVVGLGAGDKDQLTLGIYKLLKNQDNLYV-RTKD-HPVIEELDEEGIKFSFFDDIYETHEQFEAVYDFIAADLVE 78 (488)
T ss_pred CCceEEEEeeCCCchhhcchHHHHHHhccceEEE-ecCC-CchHHHHHhhcceeeehhHHHhhhhhHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999 4332 34566554322222 221 1222 345666777
Q ss_pred HhhCCCeEEEEccCCCCCCCchHHH-HHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc-cEEEEEEecCCCchhHHHHH
Q 023900 149 RLKQGEIVALISDAGTPGISDPGTE-LAKLCVDEKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLPKHARSRTERLM 226 (275)
Q Consensus 149 ~l~~G~~Vv~LS~~GDP~iys~~~~-l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~-~~~~v~~l~~~~~~~~~~l~ 226 (275)
++++ +++++. ..|.|.+...... |++++.+.++.|.|+||.|-+-+.+..+.+++. .|.++ .+.. .. +
T Consensus 79 aAke-kdIvYA-VPGHP~VAEktVqlL~e~~ek~ni~Vkilgg~SFiD~~fealkiDPveG~q~v---Da~~--l~---~ 148 (488)
T COG3956 79 AAKE-KDIVYA-VPGHPLVAEKTVQLLIEACEKENIKVKILGGQSFIDALFEALKIDPVEGFQIV---DATD--LS---N 148 (488)
T ss_pred hhcc-cceEEe-cCCCchhHHHHHHHHHHHHhccCceEEEeCcchhHHHHHHHhcCCcccCceEe---ccch--hh---H
Confidence 7765 889999 6999999976654 456677789999999999999999999999876 66776 1110 00 1
Q ss_pred HhhcCCCeEEEEcCCcC--HHHHHHHHHhhcCCCcEEEeEeccCCcCcc
Q 023900 227 LSANEVKTQIFYVPPHK--LLQFLEETSLLFGYSRRCVIAREITKMHEE 273 (275)
Q Consensus 227 ~l~~~~~tlVl~~~~~~--~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~ 273 (275)
..+.-+..+|+...... ...+.-.|++.|+.|++|.++...+..+|.
T Consensus 149 ~il~vr~hivItQVY~~miAs~vKltLmE~ypDDyev~ivtaags~~ee 197 (488)
T COG3956 149 DILDVRLHIVITQVYDQMIASDVKLTLMEYYPDDYEVYIVTAAGSENEE 197 (488)
T ss_pred HHHhhhhceeehhHHHHHHHHhHHHHHHHhCCCCceEEEEEeccCCCcc
Confidence 12222334454333221 344445678889999999999999999986
No 35
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.6e-11 Score=104.67 Aligned_cols=188 Identities=22% Similarity=0.277 Sum_probs=125.4
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC------HHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCe
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS------GKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~------~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~ 155 (275)
++|+||.|.||...||+|+++++++|.-|+-+ .+.+ .+-++.+ -+++++-.+..--++..+.|++.+. ..+
T Consensus 1 mlYlIGlGL~d~kDITlrGLeaVK~c~rVylE-aYTSil~~~l~~~lEk~-yGk~iilADRemvEq~sd~il~~ad-~~d 77 (272)
T KOG3123|consen 1 MLYLIGLGLGDEKDITLRGLEAVKKCARVYLE-AYTSILGVGLDATLEKF-YGKEIILADREMVEQESDKILDEAD-KED 77 (272)
T ss_pred CeEEEeccCCcccceehhhHHHHhhhheehHH-HHHHHHHhhhhHHHHHH-hCceeEeccHHHHHhhHHHHhhhhh-hcc
Confidence 48999999999999999999999999999874 3431 1112222 1345553321111333455666554 358
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccE-EEE--EEecCCCchh---HHHHHHhh
Q 023900 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF-TFV--GFLPKHARSR---TERLMLSA 229 (275)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~-~~v--~~l~~~~~~~---~~~l~~l~ 229 (275)
|++| ..|||+...+...++-+.++.|++|+||-..|- .-|...+|+.+..| ..+ -+....|+.. .+-+++..
T Consensus 78 Va~L-VVGdPfgATTHsDlvlRAk~~~ipv~vIHNASi-mNavG~CGLqlY~fGetVSiv~ftd~wrP~SfydkI~~Nr~ 155 (272)
T KOG3123|consen 78 VAFL-VVGDPFGATTHSDLVLRAKELGIPVEVIHNASI-MNAVGCCGLQLYNFGETVSIVFFTDNWRPESFYDKIKENRQ 155 (272)
T ss_pred eEEE-EecCcccccchhhhheehhhcCCCeEEEechHH-HhhhccceeeeeccCcEEEEEEEccCcCchhHHHHHHHhhh
Confidence 9999 689999999999999999999999999999885 45567788887655 222 2334444310 01112222
Q ss_pred cCCCeEEE-------------------EcCCc--CHHHHHHHHHh--------hcCCCcEEEeEeccCCcCccc
Q 023900 230 NEVKTQIF-------------------YVPPH--KLLQFLEETSL--------LFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 230 ~~~~tlVl-------------------~~~~~--~~~~i~~~L~e--------~~~~~~~v~V~e~Lt~~~E~i 274 (275)
.+-+|+++ |++|+ ...+.+++|++ .+.+|+.|+-+.++|.++|+|
T Consensus 156 ~glHTLcLLDIkvkEqs~enl~rgrkiyeppRymsvn~a~~QlLei~e~~~~~~~~edT~~v~~~R~Gs~~q~i 229 (272)
T KOG3123|consen 156 LGLHTLCLLDIKVKEQSVENLARGRKIYEPPRYMSVNEAAEQLLEIEEKRGEPAYTEDTLCVAVARVGSDDQKI 229 (272)
T ss_pred cCceeEEEEEEeeccHHHHHHhccccccCCchhhhHHHHHHHHHHHHHhhCCCCcCCCceEEEEEecCCCccee
Confidence 23345544 55553 24555666654 267899999999999999986
No 36
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=88.66 E-value=21 Score=33.72 Aligned_cols=159 Identities=13% Similarity=0.111 Sum_probs=92.5
Q ss_pred HHHhhCCEEEEc--CCCCCHHHHhhccCCCcEEec-CCC-CHHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHH
Q 023900 102 RVLKSANVILSE--DTRHSGKLLQYYNIKTPLLSY-HKF-NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKL 177 (275)
Q Consensus 102 ~~L~~ADvVi~~--~~~~~~~lL~~~~~~~~~i~~-~~~-~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~ 177 (275)
+.+.++|+|+.. ...+.+.....+..++.++.. +.+ +..+..+.+.++.+++..|.+++..=||++++.-..+.+.
T Consensus 56 e~l~~iDVViIctPs~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea 135 (324)
T TIGR01921 56 KHLDDVDVLILCMGSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEA 135 (324)
T ss_pred HhccCCCEEEEcCCCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhc
Confidence 345789999773 222223333444445555542 211 2345667777777766678887544599999998888888
Q ss_pred hhhCCCCEEEE-ccchHHHHHHHhCCCCCccEEEEEEecCCCchhHHHHHHhh------------cCCCeEEEEcCCcCH
Q 023900 178 CVDEKIPVVPI-PGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSA------------NEVKTQIFYVPPHKL 244 (275)
Q Consensus 178 l~~~gi~veVI-PGISS~~aaaA~lGipl~~~~~v~~l~~~~~~~~~~l~~l~------------~~~~tlVl~~~~~~~ 244 (275)
+-.+|..+..- ||+|--..-+.+-----.+....+ +|. ++.+.... ..+..+++.+.....
T Consensus 136 ~lp~g~~yt~wG~g~s~ghs~a~~~~~Gv~~a~~~t-ip~-----~dal~~v~~Ge~~~l~~~~~h~r~~~vv~e~g~~~ 209 (324)
T TIGR01921 136 VLPKGQTYTFWGPGLSQGHSDAVRRIDGVKKAVQYT-LPS-----EDALEKARRGEAPELTGKQTHKRQCFVVLKDGADH 209 (324)
T ss_pred cCCCCcceeccCCCcCchhhhhhcccCCcccceEEE-Eeh-----HHHHHHHHcCCccccccccceeeeEEEEecCCCCH
Confidence 87777766433 888864444443322111333332 231 12233222 345567778888888
Q ss_pred HHHHHHHHh---hc-CCCcEEEeEec
Q 023900 245 LQFLEETSL---LF-GYSRRCVIARE 266 (275)
Q Consensus 245 ~~i~~~L~e---~~-~~~~~v~V~e~ 266 (275)
+++-+.++. .| +.++.|..+.+
T Consensus 210 ~~v~~~i~~~p~yf~~~~t~v~~i~~ 235 (324)
T TIGR01921 210 ERVENEIRTMPDYFVGYETEVNFIDE 235 (324)
T ss_pred HHHHHHHhhCcccccCCCcEEEEeCh
Confidence 888888774 22 34667776643
No 37
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=67.96 E-value=14 Score=33.07 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHH
Q 023900 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196 (275)
Q Consensus 139 ~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~a 196 (275)
.++..+.+.+....+..-+.+| .|.|+++.-..++++++++.|+++.+...-+-...
T Consensus 58 ~~ei~~~i~~~~~~~~~~V~lT-GGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~ 114 (238)
T TIGR03365 58 AEEVWQELKALGGGTPLHVSLS-GGNPALQKPLGELIDLGKAKGYRFALETQGSVWQD 114 (238)
T ss_pred HHHHHHHHHHHhCCCCCeEEEe-CCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHH
Confidence 3555555554433334456774 89999997788999999999999988877765443
No 38
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=67.47 E-value=46 Score=31.52 Aligned_cols=101 Identities=10% Similarity=0.100 Sum_probs=52.4
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEE-EEcCCCCC--------HHHHhhccC-CCcEEec----C-------CCCH
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVI-LSEDTRHS--------GKLLQYYNI-KTPLLSY----H-------KFNE 139 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvV-i~~~~~~~--------~~lL~~~~~-~~~~i~~----~-------~~~~ 139 (275)
..|+++| |-+| .-+.+|+++|++||+| ++|.+... +.+.+.+.. .++++.. . .+..
T Consensus 167 ~~V~~~~--~~~~-~a~~eaveAI~~AD~IviGPgSl~TSIlP~Lllp~I~eaLr~~~ap~i~v~n~~~~~g~~t~~~~~ 243 (323)
T COG0391 167 HRVRLEG--PEKP-SAAPEAVEAIKEADLIVIGPGSLFTSILPILLLPGIAEALRETVAPIVYVCNLMTQAGKETDGLSV 243 (323)
T ss_pred eEEEEec--CCCC-CCCHHHHHHHHhCCEEEEcCCccHhhhchhhchhHHHHHHHhCCCCEEEeccCCCCCCcccccccH
Confidence 4688887 4333 3678999999999955 45443221 111122211 2333311 0 1123
Q ss_pred HHHHHHHHHHhhCC-CeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEc
Q 023900 140 SQREQTVLNRLKQG-EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (275)
Q Consensus 140 ~e~~~~i~~~l~~G-~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIP 189 (275)
++.+..+.+++.++ -+++++ +.-|+..- .+.+.+.+.+.+++..+
T Consensus 244 ~d~i~~i~~~~g~~~iD~viv-d~~~~~~~----~~~~~~~~~~~~V~~~~ 289 (323)
T COG0391 244 EDHIAALAQHYGAFVIDAVIV-DNDDVEDE----DLIRYVEEKGLEVEIDP 289 (323)
T ss_pred HHHHHHHHHHhCcccCcEEEE-CCCCccHH----HHHHHhhhcCceeEech
Confidence 45566666766655 467777 55555433 22244444555565554
No 39
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=64.13 E-value=81 Score=28.69 Aligned_cols=100 Identities=19% Similarity=0.148 Sum_probs=56.0
Q ss_pred eEEEEecCCCCccchHHHHHHHHh----hCCEEEEcCCCCC--HHHHhhccCCCc-----------EEecCCCCHHHHHH
Q 023900 82 GLYLVATPIGNLEDITLRALRVLK----SANVILSEDTRHS--GKLLQYYNIKTP-----------LLSYHKFNESQREQ 144 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~----~ADvVi~~~~~~~--~~lL~~~~~~~~-----------~i~~~~~~~~e~~~ 144 (275)
+|-+||+|- |-..-.+.++ ..+.++.+|+... +++.+.+...+. ++ .....++...+
T Consensus 2 ~vgiVGcGa-----IG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~Dlv-VEaAS~~Av~e 75 (255)
T COG1712 2 KVGIVGCGA-----IGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLV-VEAASPEAVRE 75 (255)
T ss_pred eEEEEeccH-----HHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhcccee-eeeCCHHHHHH
Confidence 577888874 3344445555 6788888774321 122222222111 10 01123455566
Q ss_pred HHHHHhhCCCeEEEEccCC---CCCCCchHHHHHHHhhhCCCCEEEEccc
Q 023900 145 TVLNRLKQGEIVALISDAG---TPGISDPGTELAKLCVDEKIPVVPIPGA 191 (275)
Q Consensus 145 ~i~~~l~~G~~Vv~LS~~G---DP~iys~~~~l~~~l~~~gi~veVIPGI 191 (275)
...+.+++|.+|.++| .| ||.+.++..++ ++..|-.+.+.+|.
T Consensus 76 ~~~~~L~~g~d~iV~S-VGALad~~l~erl~~l---ak~~~~rv~~pSGA 121 (255)
T COG1712 76 YVPKILKAGIDVIVMS-VGALADEGLRERLREL---AKCGGARVYLPSGA 121 (255)
T ss_pred HhHHHHhcCCCEEEEe-chhccChHHHHHHHHH---HhcCCcEEEecCcc
Confidence 6778889999999998 45 44444433333 33446678888885
No 40
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=62.66 E-value=29 Score=32.43 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=47.4
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEc-
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS- 160 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS- 160 (275)
.|++ .||-+ -.-+.+++++|++||+|+....- .+-.+.+. + .+..|.+++++ ..|+.+|
T Consensus 161 ~V~~--~g~e~-a~a~peal~AI~~AD~IIlGPgs----p~TSI~P~---L---------lVpgIreAL~~-a~vV~Vsp 220 (297)
T TIGR01819 161 DVDF--RGAEK-ASIAPKVLEAIRKEDNILIGPSN----PITSIGPI---L---------SLPGIREALRD-KKVVAVSP 220 (297)
T ss_pred EEEE--CCCCC-CCCCHHHHHHHHhCCEEEECCCc----cHHHhhhh---c---------CchhHHHHHHc-CCEEEEcc
Confidence 3444 45533 45789999999999987764431 11111111 1 12345566666 6778777
Q ss_pred cCCCCCCCchHHHHHHHh
Q 023900 161 DAGTPGISDPGTELAKLC 178 (275)
Q Consensus 161 ~~GDP~iys~~~~l~~~l 178 (275)
..|+--+.|+...++..+
T Consensus 221 iig~~~v~GpA~~~m~a~ 238 (297)
T TIGR01819 221 IVGNAPVSGPAGKLMAAV 238 (297)
T ss_pred CcCCCcCCChHHHHHHHc
Confidence 456667888888887765
No 41
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=60.39 E-value=15 Score=33.01 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=42.2
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEc
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS 160 (275)
..+++||.||+--+.+.. -++++|++++.-+ ..+++ .+....++.- +.+...+.+.+...+|..+++-
T Consensus 53 ~~v~vvG~gP~l~e~~~~------~~~~~vi~AdgA~-~~l~~-~gi~pDiiVT---DlDgd~e~~~~~~~~g~i~VVH- 120 (232)
T COG1634 53 REVAVVGAGPSLEEEIKG------LSSEVVIAADGAV-SALLE-RGIRPDIIVT---DLDGDPEDLLSCTAKGSIVVVH- 120 (232)
T ss_pred CEEEEECCCCcHhhhhcc------cccceEEeccHHH-HHHHH-cCCCCcEEEe---cCCCCHHHHHHhhccCCEEEEE-
Confidence 479999999986665554 5688999987422 22222 1211123321 1122245566666778776666
Q ss_pred cCCCC
Q 023900 161 DAGTP 165 (275)
Q Consensus 161 ~~GDP 165 (275)
.-||-
T Consensus 121 AHGDN 125 (232)
T COG1634 121 AHGDN 125 (232)
T ss_pred ecCcC
Confidence 57883
No 42
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=60.21 E-value=25 Score=31.03 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccch
Q 023900 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (275)
Q Consensus 139 ~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGIS 192 (275)
.+++.+.+.+.....+ -+.+| .|+|+...-...+++.+++.|+++.+--+-+
T Consensus 58 ~~~I~~~i~~~~~~~~-~V~lT-GGEP~~~~~l~~Ll~~l~~~g~~~~lETngt 109 (212)
T COG0602 58 ADEILADIKSLGYKAR-GVSLT-GGEPLLQPNLLELLELLKRLGFRIALETNGT 109 (212)
T ss_pred HHHHHHHHHhcCCCcc-eEEEe-CCcCCCcccHHHHHHHHHhCCceEEecCCCC
Confidence 3444444443322233 44553 9999887778899999999898887766433
No 43
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=54.94 E-value=80 Score=22.99 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=42.0
Q ss_pred HHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHH
Q 023900 97 TLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAK 176 (275)
Q Consensus 97 Tl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~ 176 (275)
|.+..+.+.+.+.++. |.|...+..+...+++.-++ .++ .+.....+..++.|++.|..| ........
T Consensus 2 ~~~e~~~~~~~~~~ii-D~R~~~~~~~~hipgA~~ip-----~~~-~~~~~~~~~~~~~vvl~c~~g-----~~a~~~a~ 69 (90)
T cd01524 2 QWHELDNYRADGVTLI-DVRTPQEFEKGHIKGAINIP-----LDE-LRDRLNELPKDKEIIVYCAVG-----LRGYIAAR 69 (90)
T ss_pred CHHHHHHHhcCCCEEE-ECCCHHHHhcCCCCCCEeCC-----HHH-HHHHHHhcCCCCcEEEEcCCC-----hhHHHHHH
Confidence 4444455556676666 55554343322222322221 122 222223356677888886332 22344455
Q ss_pred HhhhCCCCEEEEccc
Q 023900 177 LCVDEKIPVVPIPGA 191 (275)
Q Consensus 177 ~l~~~gi~veVIPGI 191 (275)
.|++.|+++.++.|-
T Consensus 70 ~L~~~G~~v~~l~GG 84 (90)
T cd01524 70 ILTQNGFKVKNLDGG 84 (90)
T ss_pred HHHHCCCCEEEecCC
Confidence 667778788777764
No 44
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=53.67 E-value=1.7e+02 Score=26.59 Aligned_cols=105 Identities=12% Similarity=0.127 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEE-EEecCCC
Q 023900 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFV-GFLPKHA 218 (275)
Q Consensus 140 ~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v-~~l~~~~ 218 (275)
++.++++.+.+.+-++|.++- .| .-+....++..+|..-|.++..+.+...... ...-+..+|+.+. ++ ++..
T Consensus 117 ~~~l~~av~~L~~A~rI~~~G-~g--~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~--~~~~~~~~Dv~i~iS~-sG~t 190 (281)
T COG1737 117 EEALERAVELLAKARRIYFFG-LG--SSGLVASDLAYKLMRIGLNVVALSDTHGQLM--QLALLTPGDVVIAISF-SGYT 190 (281)
T ss_pred HHHHHHHHHHHHcCCeEEEEE-ec--hhHHHHHHHHHHHHHcCCceeEecchHHHHH--HHHhCCCCCEEEEEeC-CCCc
Confidence 455677778888888888882 33 3334567888888889999999999987763 4444555577655 32 2222
Q ss_pred chhHHHHHHhhcCCCeEEEEcCC--cCHHHHHHH
Q 023900 219 RSRTERLMLSANEVKTQIFYVPP--HKLLQFLEE 250 (275)
Q Consensus 219 ~~~~~~l~~l~~~~~tlVl~~~~--~~~~~i~~~ 250 (275)
++-.+.++.+.+.+-++|.++.. ..+.+..+.
T Consensus 191 ~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~ 224 (281)
T COG1737 191 REIVEAAELAKERGAKVIAITDSADSPLAKLADI 224 (281)
T ss_pred HHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhce
Confidence 22223344455555555544443 235554443
No 45
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=53.15 E-value=46 Score=26.76 Aligned_cols=82 Identities=15% Similarity=0.273 Sum_probs=50.4
Q ss_pred hCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCE
Q 023900 106 SANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPV 185 (275)
Q Consensus 106 ~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~v 185 (275)
+.|++++++.++.++ .+.+...+.- +.+... .+++.+.+..+-.|.++ -+|--++-+...+-.+.+++.+++|
T Consensus 20 ~~DIvi~~dG~v~rr-~K~lskrK~G-TSHkl~----~eEle~~lee~~E~ivv-GTG~~G~l~l~~ea~e~~r~k~~~v 92 (121)
T COG1504 20 EHDIVIRPDGKVERR-EKELSKRKYG-TSHKLA----LEELEELLEEGPEVIVV-GTGQSGMLELSEEAREFFRKKGCEV 92 (121)
T ss_pred cccEEEecCCceehh-hhhhhhhhcC-cccccC----HHHHHHHHhcCCcEEEE-ecCceeEEEeCHHHHHHHHhcCCeE
Confidence 469999988665433 2222111100 111112 23444455567778888 5788888788888888899988888
Q ss_pred EEEccchHH
Q 023900 186 VPIPGASAF 194 (275)
Q Consensus 186 eVIPGISS~ 194 (275)
.+.|=.=++
T Consensus 93 i~~pT~EAi 101 (121)
T COG1504 93 IELPTPEAI 101 (121)
T ss_pred EEeCCHHHH
Confidence 887765443
No 46
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=51.04 E-value=47 Score=31.70 Aligned_cols=31 Identities=6% Similarity=0.213 Sum_probs=28.8
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEc
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSE 113 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~ 113 (275)
.++-+.|+|| -+++|..+.+++..+|+|+.+
T Consensus 171 s~vLV~GAGP--IGl~t~l~Aka~GA~~VVi~d 201 (354)
T KOG0024|consen 171 SKVLVLGAGP--IGLLTGLVAKAMGASDVVITD 201 (354)
T ss_pred CeEEEECCcH--HHHHHHHHHHHcCCCcEEEee
Confidence 4799999999 799999999999999999995
No 47
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=49.06 E-value=1.1e+02 Score=28.82 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=56.4
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccC--CCcEEecCCCCHHHHHHHHHHHhh-CCCeEE
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNI--KTPLLSYHKFNESQREQTVLNRLK-QGEIVA 157 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~--~~~~i~~~~~~~~e~~~~i~~~l~-~G~~Vv 157 (275)
+++.|+|+|| -++|+..+.+....+++|+. +. ...+ ++.... ....+.... +++....+.+.-. .|-+++
T Consensus 170 ~~V~V~GaGp--IGLla~~~a~~~Ga~~Viv~-d~-~~~R-l~~A~~~~g~~~~~~~~--~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 170 GTVVVVGAGP--IGLLAIALAKLLGASVVIVV-DR-SPER-LELAKEAGGADVVVNPS--EDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CEEEEECCCH--HHHHHHHHHHHcCCceEEEe-CC-CHHH-HHHHHHhCCCeEeecCc--cccHHHHHHHHhCCCCCCEE
Confidence 3799999998 79999999999999999998 32 2222 332211 223332221 1122333333322 257899
Q ss_pred EEccCCCCCCCchHHHHHHHhhhCCCCEEEEccch
Q 023900 158 LISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (275)
Q Consensus 158 ~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGIS 192 (275)
+-+ +|.|. .....++.++..| ..++-|+.
T Consensus 243 ie~-~G~~~---~~~~ai~~~r~gG--~v~~vGv~ 271 (350)
T COG1063 243 IEA-VGSPP---ALDQALEALRPGG--TVVVVGVY 271 (350)
T ss_pred EEC-CCCHH---HHHHHHHHhcCCC--EEEEEecc
Confidence 995 88443 2344555555544 34455554
No 48
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=49.02 E-value=1.3e+02 Score=28.31 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCC-CeEEEEc-cCCCCCCCch
Q 023900 93 LEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQG-EIVALIS-DAGTPGISDP 170 (275)
Q Consensus 93 pdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G-~~Vv~LS-~~GDP~iys~ 170 (275)
.-.-+..++++|++||+|+....- .+-.+.+. + .+..|.+++++- -.|+++| ..|+--+.|+
T Consensus 170 ~a~~~p~vl~AI~~AD~IVlGPgs----p~TSI~P~---L---------lVpgI~eAL~~s~A~vV~Vspiig~~~v~Gp 233 (303)
T cd07186 170 EARPAPEVLEAIEDADLVIIGPSN----PVTSIGPI---L---------ALPGIREALRDKKAPVVAVSPIIGGKAVSGP 233 (303)
T ss_pred cCCCCHHHHHHHHhCCEEEECCCc----cHHHhhhh---c---------cchhHHHHHHhCCCCEEEEcCCCCCCCCCch
Confidence 345789999999999987764431 11111111 1 123344555433 2577776 5688888899
Q ss_pred HHHHHHHh
Q 023900 171 GTELAKLC 178 (275)
Q Consensus 171 ~~~l~~~l 178 (275)
...+++.+
T Consensus 234 a~~~m~a~ 241 (303)
T cd07186 234 AAKLMAAL 241 (303)
T ss_pred HHHHHHHc
Confidence 98888775
No 49
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=47.06 E-value=68 Score=30.14 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=46.3
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEc-
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS- 160 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS- 160 (275)
.|++.|. +.-.-|..++++|++||+|+....- .+-.+.+ .+ .+..|.+++ ....|+.+|
T Consensus 164 ~v~~~~~---~~a~a~p~vl~AI~~AD~IiiGPgn----p~TSI~P---~L---------~v~gi~eAL-~~a~vV~Vsp 223 (303)
T PRK13606 164 DVVFVGA---EKAKPAPGVLEAIEEADAVIIGPSN----PVTSIGP---IL---------AVPGIREAL-TEAPVVAVSP 223 (303)
T ss_pred EEEEeCc---ccCCCCHHHHHHHHhCCEEEECCCc----cHHhhch---hc---------cchhHHHHH-hCCCEEEEcC
Confidence 4666554 2345789999999999999885431 1211111 11 123355555 455677776
Q ss_pred cCCCCCCCchHHHHHHHh
Q 023900 161 DAGTPGISDPGTELAKLC 178 (275)
Q Consensus 161 ~~GDP~iys~~~~l~~~l 178 (275)
..|+--+.|+...++...
T Consensus 224 ~Ig~~~v~GPA~~lm~a~ 241 (303)
T PRK13606 224 IIGGAPVSGPAAKLMAAI 241 (303)
T ss_pred CCCCCcCCChhHHHHHHc
Confidence 456667778887777654
No 50
>PRK00861 putative lipid kinase; Reviewed
Probab=46.78 E-value=1e+02 Score=28.19 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=39.2
Q ss_pred HHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC
Q 023900 148 NRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT 205 (275)
Q Consensus 148 ~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl 205 (275)
+...++.+++++ ..|| |+..+.++.+...+.++-++|+-| ....+-.+|+|.
T Consensus 52 ~~~~~~~d~vv~-~GGD----GTl~evv~~l~~~~~~lgviP~GT-gNdfAr~lgi~~ 103 (300)
T PRK00861 52 EAIERGAELIIA-SGGD----GTLSAVAGALIGTDIPLGIIPRGT-ANAFAAALGIPD 103 (300)
T ss_pred HHHhcCCCEEEE-ECCh----HHHHHHHHHHhcCCCcEEEEcCCc-hhHHHHHcCCCC
Confidence 344556677777 4999 677778888877778899999977 577777788875
No 51
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=46.17 E-value=45 Score=34.81 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=75.0
Q ss_pred HhhhCCCccccccccchhh--h------hhhhhccccccccceeeeccccCCCCCCccchHhhhhhccCCCCCCCC-eEE
Q 023900 14 LATTGLSKTSWQSRPLLSF--L------RTQTLLNSLSLYPKINYLLLCSCSQSQTSPDFSNLILEQSSKRGPLEP-GLY 84 (275)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~ 84 (275)
|=.-|+-|+=|.+-|-.+. + ==|+++.=.+.+-|+| .|+|. |-.+ ||+.+..+.....+.++| +|-
T Consensus 593 Ll~dGiGD~i~i~~~~~~~~~~~~~~~~ILQ~~~~R~~kte~is---CPgCG-RT~~-dlq~~~~~I~~~~~hl~Gvkia 667 (733)
T PLN02925 593 LLVDGLGDGVLLEAPDQDFDFLRNTSFGLLQGCRMRNTKTEYVS---CPSCG-RTLF-DLQEVSAEIREKTSHLPGVSIA 667 (733)
T ss_pred HHhccCcceEEEeCCCCCHHHHHHHHHHHHHHhCccccCCeEEE---CCCCC-Cccc-cHHHHHHHHHHHhhcCCCceEE
Confidence 3445888998988874332 2 1233333367777888 99998 5534 499999888877777766 688
Q ss_pred EEec---CCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCe
Q 023900 85 LVAT---PIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (275)
Q Consensus 85 iVGv---GPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~ 155 (275)
|.|+ |||.- +.||+=+.... . .-+..|. +++.+.. ..++++..+++++.+++..+
T Consensus 668 vMGCIVNGPGEm-----------adAd~GyVG~g-p--gKI~LYv-gKecV~~-nIpeeeAvd~LIeLIKe~G~ 725 (733)
T PLN02925 668 IMGCIVNGPGEM-----------ADADFGYVGGA-P--GKIDLYV-GKEVVKR-GIAMEEATDALIQLIKDHGR 725 (733)
T ss_pred EEeeeecCCccc-----------cccccceeccC-C--CeeEEEe-cceehhc-CCCHHHHHHHHHHHHHHcCc
Confidence 8886 88753 45666544221 1 1133332 2333321 13567888999999986543
No 52
>PRK13057 putative lipid kinase; Reviewed
Probab=45.46 E-value=1.1e+02 Score=27.88 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=39.0
Q ss_pred HHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC
Q 023900 146 VLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT 205 (275)
Q Consensus 146 i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl 205 (275)
+.+.+.++.+++++ ..|| |+..+.++.+...++++-++|+-| ....+-.+|+|.
T Consensus 43 ~~~~~~~~~d~iiv-~GGD----GTv~~v~~~l~~~~~~lgiiP~GT-~Ndfar~Lg~~~ 96 (287)
T PRK13057 43 VIEAYADGVDLVIV-GGGD----GTLNAAAPALVETGLPLGILPLGT-ANDLARTLGIPL 96 (287)
T ss_pred HHHHHHcCCCEEEE-ECch----HHHHHHHHHHhcCCCcEEEECCCC-ccHHHHHcCCCC
Confidence 33334556667777 4999 777778888777788999999888 466666667764
No 53
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=43.52 E-value=1.8e+02 Score=23.70 Aligned_cols=120 Identities=9% Similarity=-0.033 Sum_probs=62.8
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHH---hhCCEEEEcCCCCCHHHHhhccC-CCcEEe--cCCCCHHHHHHHHHHHhhC
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVL---KSANVILSEDTRHSGKLLQYYNI-KTPLLS--YHKFNESQREQTVLNRLKQ 152 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L---~~ADvVi~~~~~~~~~lL~~~~~-~~~~i~--~~~~~~~e~~~~i~~~l~~ 152 (275)
|+++-.++|+.+||...+=+.-...+ +..++|........+++++.... +..++. +-+.........+++.+++
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHh
Confidence 45566799999998776665544333 23367766433233556654432 333432 2222223344445555543
Q ss_pred C-C-eEEEEccCCCCCCC-chHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 023900 153 G-E-IVALISDAGTPGIS-DPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (275)
Q Consensus 153 G-~-~Vv~LS~~GDP~iy-s~~~~l~~~l~~~gi~veVIPGISS~~aaaA~ 200 (275)
. . ++-++ ..|-+.+- +...+..+++++.|++.-.-||- .+.-....
T Consensus 81 ~~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~-~~~~i~~~ 129 (137)
T PRK02261 81 AGLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT-DPEEAIDD 129 (137)
T ss_pred cCCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCC-CHHHHHHH
Confidence 2 2 34455 36766553 23456667788888764444443 44444433
No 54
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=43.28 E-value=82 Score=29.81 Aligned_cols=51 Identities=14% Similarity=0.093 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccc
Q 023900 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (275)
Q Consensus 140 ~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGI 191 (275)
++..+.+.+..+.|-..+.++ .|.|++..-..++++.+++.|+.+.+.---
T Consensus 49 e~~~~ii~~~~~~g~~~v~~~-GGEPll~~~~~~il~~~~~~g~~~~i~TNG 99 (378)
T PRK05301 49 EEWIRVLREARALGALQLHFS-GGEPLLRKDLEELVAHARELGLYTNLITSG 99 (378)
T ss_pred HHHHHHHHHHHHcCCcEEEEE-CCccCCchhHHHHHHHHHHcCCcEEEECCC
Confidence 333333333334454556664 899999988889999998888877665443
No 55
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=42.88 E-value=15 Score=33.26 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=44.1
Q ss_pred CccccchhhhHHHHhhhC-CCccccccccchhhhhhhhhccc-cccccceeeeccc
Q 023900 1 MRLVQRLPLMANSLATTG-LSKTSWQSRPLLSFLRTQTLLNS-LSLYPKINYLLLC 54 (275)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 54 (275)
|..-+.++.+++.|+..| +.++=|++|.+|.-++--.+.+. ....||||..+..
T Consensus 173 MK~~~~~~~i~~~l~~~g~~~~~~~v~R~~m~~e~i~~l~~~~~~~~~Yfs~ii~~ 228 (234)
T COG2243 173 MKVGRNFEKLRRLLAKLGLLDRAVYVERATMAGEKIVRLAEAERDEKPYFSTILVR 228 (234)
T ss_pred EecCCcHHHHHHHHHhcCCCceEEEEeecCCCCcEEEeccccCcccCCceEEEEEe
Confidence 445568899999999999 77777899999999888777776 4555999977765
No 56
>PRK05443 polyphosphate kinase; Provisional
Probab=42.75 E-value=1.1e+02 Score=32.02 Aligned_cols=84 Identities=11% Similarity=0.238 Sum_probs=53.0
Q ss_pred HHHHHhhCCEEEEcCCCCCH-HHHhh---ccCCCcEEe-----cCCCCHHHHHHHHHHHhhCCCeEEEEccCCCCCCC-c
Q 023900 100 ALRVLKSANVILSEDTRHSG-KLLQY---YNIKTPLLS-----YHKFNESQREQTVLNRLKQGEIVALISDAGTPGIS-D 169 (275)
Q Consensus 100 A~~~L~~ADvVi~~~~~~~~-~lL~~---~~~~~~~i~-----~~~~~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iy-s 169 (275)
--++|++=|+++..+ +.+- .+++. ...+..++. |.......+++.+.+++++|++|.++. .+-+-+- .
T Consensus 332 if~~I~~~DiLLh~P-Y~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~vlv-e~karfde~ 409 (691)
T PRK05443 332 IFAAIREKDILLHHP-YESFDPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVLV-ELKARFDEE 409 (691)
T ss_pred HHHHHhhCCEEEECC-ccCchHHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEEEE-ccCccccHH
Confidence 457899999999965 4432 23333 222323322 221234678899999999999999994 5554332 2
Q ss_pred hHHHHHHHhhhCCCCE
Q 023900 170 PGTELAKLCVDEKIPV 185 (275)
Q Consensus 170 ~~~~l~~~l~~~gi~v 185 (275)
......+.|.+.|+.|
T Consensus 410 ~n~~~~~~L~~aGv~V 425 (691)
T PRK05443 410 ANIRWARRLEEAGVHV 425 (691)
T ss_pred HHHHHHHHHHHcCCEE
Confidence 3345567888888776
No 57
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=41.02 E-value=1.2e+02 Score=28.09 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCC-EEEEccchHHHHHHHhCCCCCc
Q 023900 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIP-VVPIPGASAFVAALSASGLATD 206 (275)
Q Consensus 144 ~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~-veVIPGISS~~aaaA~lGipl~ 206 (275)
+...+....+-++++. ..|| |+..+.+..+.+.+.+ +-++|+-| ....+-.+|+|.+
T Consensus 49 ~~a~~a~~~~~D~via-~GGD----GTv~evingl~~~~~~~LgilP~GT-~NdfAr~Lgip~~ 106 (301)
T COG1597 49 EIAREAAVEGYDTVIA-AGGD----GTVNEVANGLAGTDDPPLGILPGGT-ANDFARALGIPLD 106 (301)
T ss_pred HHHHHHHhcCCCEEEE-ecCc----chHHHHHHHHhcCCCCceEEecCCc-hHHHHHHcCCCch
Confidence 3334444456777887 4899 6777888888887777 89999998 5778888899973
No 58
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=40.69 E-value=95 Score=26.04 Aligned_cols=53 Identities=11% Similarity=0.006 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccch
Q 023900 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (275)
Q Consensus 138 ~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGIS 192 (275)
+.++..+.+.+. ...-..+.++ .|+|+++....++++.+.+.|+.+.+.+.-+
T Consensus 48 ~~~~i~~~i~~~-~~~~~~i~~s-GGEPll~~~l~~li~~~~~~g~~v~i~TNg~ 100 (191)
T TIGR02495 48 EVEFLLEFLRSR-QGLIDGVVIT-GGEPTLQAGLPDFLRKVRELGFEVKLDTNGS 100 (191)
T ss_pred CHHHHHHHHHHh-cCCCCeEEEE-CCcccCcHhHHHHHHHHHHCCCeEEEEeCCC
Confidence 345555555443 2222345564 8999998778888999988898887775554
No 59
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=40.03 E-value=1.4e+02 Score=29.23 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=32.4
Q ss_pred eEEEEecCCC--CccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCC
Q 023900 82 GLYLVATPIG--NLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIK 128 (275)
Q Consensus 82 ~l~iVGvGPG--dpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~ 128 (275)
+++++|.|.| +-..-...++.++++||.|..=| ..+.++++.++..
T Consensus 150 pv~l~gqsiGPf~~~~~r~l~r~vl~~~~~ItvRD-~~S~~~Lk~lGv~ 197 (426)
T PRK10017 150 PLYMIGHSVGPFQDEQFNQLANYVFGHCDALILRE-SVSLDLMKRSNIT 197 (426)
T ss_pred CEEEECCcCCCcCCHHHHHHHHHHHhcCCEEEEcc-HHHHHHHHHhCCC
Confidence 3666555555 55555677889999999999944 4667788877654
No 60
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=39.12 E-value=94 Score=29.06 Aligned_cols=44 Identities=20% Similarity=0.126 Sum_probs=30.7
Q ss_pred HHHHHh-hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEc
Q 023900 145 TVLNRL-KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (275)
Q Consensus 145 ~i~~~l-~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIP 189 (275)
.+++.+ ..|-..+.++ .|+|++..-..++++.+++.|+.+.+.-
T Consensus 44 ~ii~~~~~~g~~~v~~~-GGEPll~~~~~~ii~~~~~~g~~~~l~T 88 (358)
T TIGR02109 44 DVLTQAAELGVLQLHFS-GGEPLARPDLVELVAHARRLGLYTNLIT 88 (358)
T ss_pred HHHHHHHhcCCcEEEEe-CccccccccHHHHHHHHHHcCCeEEEEe
Confidence 344443 3354556674 8999999888889999988887766543
No 61
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=39.08 E-value=1.2e+02 Score=23.94 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=31.9
Q ss_pred HhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCC----CEEEEccchHHHHHHHhCCCCC
Q 023900 149 RLKQGEIVALISDAGTPGISDPGTELAKLCVDEKI----PVVPIPGASAFVAALSASGLAT 205 (275)
Q Consensus 149 ~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi----~veVIPGISS~~aaaA~lGipl 205 (275)
......+++++ ..|| |+..+.+..+.+.+. ++-++|+-| ....+-.+|++.
T Consensus 50 ~~~~~~~~ivv-~GGD----GTl~~vv~~l~~~~~~~~~~l~iiP~GT-~N~~ar~lg~~~ 104 (130)
T PF00781_consen 50 ALDDYPDVIVV-VGGD----GTLNEVVNGLMGSDREDKPPLGIIPAGT-GNDFARSLGIPS 104 (130)
T ss_dssp HHTTS-SEEEE-EESH----HHHHHHHHHHCTSTSSS--EEEEEE-SS-S-HHHHHTT--S
T ss_pred hhccCccEEEE-EcCc----cHHHHHHHHHhhcCCCccceEEEecCCC-hhHHHHHcCCCC
Confidence 33444356666 4899 777778887776655 788999766 577777777763
No 62
>PRK11914 diacylglycerol kinase; Reviewed
Probab=38.66 E-value=1.1e+02 Score=28.07 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=38.5
Q ss_pred HHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC
Q 023900 146 VLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT 205 (275)
Q Consensus 146 i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl 205 (275)
+.+...++-+++++ ..|| |+..+.++.+...++++-++|+=|. +..+-.+|+|.
T Consensus 57 a~~~~~~~~d~vvv-~GGD----GTi~evv~~l~~~~~~lgiiP~GT~-NdfAr~lg~~~ 110 (306)
T PRK11914 57 VAAALAKGTDALVV-VGGD----GVISNALQVLAGTDIPLGIIPAGTG-NDHAREFGIPT 110 (306)
T ss_pred HHHHHhcCCCEEEE-ECCc----hHHHHHhHHhccCCCcEEEEeCCCc-chhHHHcCCCC
Confidence 33444556567777 4899 6666777777777889999998884 55556778874
No 63
>PRK12361 hypothetical protein; Provisional
Probab=36.56 E-value=1.9e+02 Score=29.07 Aligned_cols=52 Identities=25% Similarity=0.236 Sum_probs=36.4
Q ss_pred HHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCC
Q 023900 148 NRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (275)
Q Consensus 148 ~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGip 204 (275)
+...++.+++++ ..|| |+..+.++.+.+.++++-++|+-|.=..|-+..|++
T Consensus 292 ~~~~~~~d~Viv-~GGD----GTl~ev~~~l~~~~~~lgiiP~GTgNdfAr~L~gi~ 343 (547)
T PRK12361 292 QARKAGADIVIA-CGGD----GTVTEVASELVNTDITLGIIPLGTANALSHALFGLG 343 (547)
T ss_pred HHHhcCCCEEEE-ECCC----cHHHHHHHHHhcCCCCEEEecCCchhHHHHHhcCCC
Confidence 333456677777 4999 666777787777788999999998654444433664
No 64
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=36.32 E-value=76 Score=24.84 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=40.5
Q ss_pred HHHHHHHHHHH-hhCCCeEEEEccCCCCCCCchHHHHHHHhhhC---CCCEEEEccchH----HHHHHHhCC
Q 023900 139 ESQREQTVLNR-LKQGEIVALISDAGTPGISDPGTELAKLCVDE---KIPVVPIPGASA----FVAALSASG 202 (275)
Q Consensus 139 ~~e~~~~i~~~-l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~---gi~veVIPGISS----~~aaaA~lG 202 (275)
.++..+.+.+. ...|...+.++ .|||..+.....+...+.+. ++++.+.-..+- .....+.+|
T Consensus 30 ~e~i~~~~~~~~~~~~~~~i~~~-~gep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~ 100 (166)
T PF04055_consen 30 PEEILEEIKELKQDKGVKEIFFG-GGEPTLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLG 100 (166)
T ss_dssp HHHHHHHHHHHHHHTTHEEEEEE-SSTGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHhcCCcEEEEe-ecCCCcchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcC
Confidence 35556666665 46666777774 89999998887777776664 555554444333 355555556
No 65
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=35.87 E-value=1.1e+02 Score=28.43 Aligned_cols=74 Identities=11% Similarity=0.140 Sum_probs=39.9
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhcc----C-C----CcEEecCCCCHHHHHHHHHHHhh
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN----I-K----TPLLSYHKFNESQREQTVLNRLK 151 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~----~-~----~~~i~~~~~~~~e~~~~i~~~l~ 151 (275)
.+|.+||.|.|. .+....+...-..+++++ +.+++++... . . .+.+.+ ..++-.+.+.+. .
T Consensus 78 k~VLiiGgGdG~---tlRevlkh~~ve~i~~VE---ID~~Vi~~ar~~l~~~~~~~~dpRv~i---~i~Dg~~~v~~~-~ 147 (282)
T COG0421 78 KRVLIIGGGDGG---TLREVLKHLPVERITMVE---IDPAVIELARKYLPEPSGGADDPRVEI---IIDDGVEFLRDC-E 147 (282)
T ss_pred CeEEEECCCccH---HHHHHHhcCCcceEEEEE---cCHHHHHHHHHhccCcccccCCCceEE---EeccHHHHHHhC-C
Confidence 489999999984 444445555455666663 3455554321 1 0 011111 012233444333 3
Q ss_pred CCCeEEEEccCCCC
Q 023900 152 QGEIVALISDAGTP 165 (275)
Q Consensus 152 ~G~~Vv~LS~~GDP 165 (275)
+.-+|.++ |+.||
T Consensus 148 ~~fDvIi~-D~tdp 160 (282)
T COG0421 148 EKFDVIIV-DSTDP 160 (282)
T ss_pred CcCCEEEE-cCCCC
Confidence 35688888 89998
No 66
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=35.51 E-value=1.8e+02 Score=27.83 Aligned_cols=72 Identities=14% Similarity=0.076 Sum_probs=45.0
Q ss_pred CEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCC-CeEEEEccCCCCCCCchH--HHHHHHhhhCCCC
Q 023900 108 NVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQG-EIVALISDAGTPGISDPG--TELAKLCVDEKIP 184 (275)
Q Consensus 108 DvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G-~~Vv~LS~~GDP~iys~~--~~l~~~l~~~gi~ 184 (275)
-+|+.+. +.....|+.++...+++......-.+..+.|+ +.| ++|++++ ||--.|.+ ..+++.|++.|++
T Consensus 25 ~~ilveg-~~d~~~l~~lgi~g~~i~~s~~p~~~cad~ii---~~gi~rVVi~~---D~d~~G~~~~~~~~~~L~~aGi~ 97 (360)
T PRK14719 25 IPILVEG-PNDILSLKNLKINANFITVSNTPVFQIADDLI---AENISEVILLT---DFDRAGRVYAKNIMEEFQSRGIK 97 (360)
T ss_pred CEEEEEc-chHHHHHHHcCCCCcEEEEeCCchHHHHHHHH---HcCCCEEEEEE---CCCCCCCccchHHHHHHHHCCCE
Confidence 4666655 34456788888766766544322233444443 345 7899984 65556543 5678889999988
Q ss_pred EE
Q 023900 185 VV 186 (275)
Q Consensus 185 ve 186 (275)
|.
T Consensus 98 V~ 99 (360)
T PRK14719 98 VN 99 (360)
T ss_pred EE
Confidence 84
No 67
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=34.88 E-value=2e+02 Score=27.02 Aligned_cols=61 Identities=21% Similarity=0.188 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhCCCe-EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCC
Q 023900 139 ESQREQTVLNRLKQGEI-VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGL 203 (275)
Q Consensus 139 ~~e~~~~i~~~l~~G~~-Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGi 203 (275)
.....+.+..+...|++ .|++ .-+-|..- |..+++.|.+.|+++.+|+= |++.+...+...
T Consensus 129 S~~v~~~l~~A~~~~k~~~V~V-tESRP~~e--G~~~ak~L~~~gI~~~~I~D-sa~~~~~~~vd~ 190 (301)
T COG1184 129 SKTVLEVLKTAADRGKRFKVIV-TESRPRGE--GRIMAKELRQSGIPVTVIVD-SAVGAFMSRVDK 190 (301)
T ss_pred cHHHHHHHHHhhhcCCceEEEE-EcCCCcch--HHHHHHHHHHcCCceEEEec-hHHHHHHHhCCE
Confidence 34455556666666763 3444 35899987 68899999999999998874 445555544443
No 68
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=34.82 E-value=3.1e+02 Score=23.85 Aligned_cols=89 Identities=12% Similarity=0.133 Sum_probs=47.2
Q ss_pred CeEEEEecCCCCccchHHHHHHHHh-hCCEEEEcCCCCCHHHHhhccCCCcEEe-cCCCCHHHHHHHHHHHhhCCCeEEE
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLK-SANVILSEDTRHSGKLLQYYNIKTPLLS-YHKFNESQREQTVLNRLKQGEIVAL 158 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~-~ADvVi~~~~~~~~~lL~~~~~~~~~i~-~~~~~~~e~~~~i~~~l~~G~~Vv~ 158 (275)
.++.|||.|+=. .-|+...++ .|++.+..+ ...+++.+.. ...++.. ...+... . -++...++
T Consensus 10 k~vlVvGgG~va----~rk~~~Ll~~ga~VtVvsp-~~~~~l~~l~-~~~~i~~~~~~~~~~--------d-l~~~~lVi 74 (205)
T TIGR01470 10 RAVLVVGGGDVA----LRKARLLLKAGAQLRVIAE-ELESELTLLA-EQGGITWLARCFDAD--------I-LEGAFLVI 74 (205)
T ss_pred CeEEEECcCHHH----HHHHHHHHHCCCEEEEEcC-CCCHHHHHHH-HcCCEEEEeCCCCHH--------H-hCCcEEEE
Confidence 479999999722 233444443 346777743 3444433322 2222211 1122211 1 24678888
Q ss_pred EccCCCCCCCchHHHHHHHhhhCCCCEEEE
Q 023900 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPI 188 (275)
Q Consensus 159 LS~~GDP~iys~~~~l~~~l~~~gi~veVI 188 (275)
++ .|||-+. ..+...+++.|+.|.++
T Consensus 75 ~a-t~d~~ln---~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 75 AA-TDDEELN---RRVAHAARARGVPVNVV 100 (205)
T ss_pred EC-CCCHHHH---HHHHHHHHHcCCEEEEC
Confidence 85 8998655 45666666677777543
No 69
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=34.80 E-value=3e+02 Score=25.80 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhC--CCeEEEEccCCCCCCCch--HHHHHHHhhh
Q 023900 141 QREQTVLNRLKQ--GEIVALISDAGTPGISDP--GTELAKLCVD 180 (275)
Q Consensus 141 e~~~~i~~~l~~--G~~Vv~LS~~GDP~iys~--~~~l~~~l~~ 180 (275)
+..+.+++.+++ |-+-+++| +|||++... ..++++.+.+
T Consensus 145 ~~~~~~i~~i~~~~~i~eV~ls-GGDPLl~~d~~L~~ll~~L~~ 187 (331)
T TIGR00238 145 KKWQKALDYIAEHPEIIEILIS-GGDPLMAKDHELEWLLKRLEE 187 (331)
T ss_pred HHHHHHHHHHHhCCCcCEEEEE-CCccccCCHHHHHHHHHHHHh
Confidence 445556666643 44556774 899998865 5677777765
No 70
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=34.38 E-value=1.5e+02 Score=27.88 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=47.7
Q ss_pred eeeccccCCCCCCccchHhhhhhccCCCCCCCCeEEEEecCCCCccchHHHHHHHHhhCC----EEEE
Q 023900 49 NYLLLCSCSQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSAN----VILS 112 (275)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~iVGvGPGdpdlLTl~A~~~L~~AD----vVi~ 112 (275)
.+.++|-|.|---.+.|...-.+.... ..+=.+|-.|=-||.+||.|-+..|.+-+ +|++
T Consensus 130 k~~~~lGp~y~~lr~eF~~~r~~~~~r----~~r~ilI~lGGsDpk~lt~kvl~~L~~~~~nl~iV~g 193 (318)
T COG3980 130 KTRYYLGPGYAPLRPEFYALREENTER----PKRDILITLGGSDPKNLTLKVLAELEQKNVNLHIVVG 193 (318)
T ss_pred ceEEEecCCceeccHHHHHhHHHHhhc----chheEEEEccCCChhhhHHHHHHHhhccCeeEEEEec
Confidence 345688888888899999988888643 23446888888899999999999999887 5555
No 71
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=34.26 E-value=95 Score=31.97 Aligned_cols=49 Identities=12% Similarity=-0.113 Sum_probs=29.4
Q ss_pred HHHHHHhhcCCCeEEEEcCCcC----HHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 222 TERLMLSANEVKTQIFYVPPHK----LLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 222 ~~~l~~l~~~~~tlVl~~~~~~----~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
++.+..+++....+|..+...- -..+.+.|.+ .+...+ +.+++.|||-+
T Consensus 543 ~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~-~~~~~~---v~~lglpd~fi 595 (627)
T COG1154 543 EALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAA-HGILVP---VLNLGLPDEFI 595 (627)
T ss_pred HHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHh-cCCCCc---eEEecCChHhh
Confidence 3567888887777777665432 3445555544 222233 56788888754
No 72
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=33.99 E-value=41 Score=32.97 Aligned_cols=33 Identities=6% Similarity=-0.062 Sum_probs=20.7
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcC
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSED 114 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~ 114 (275)
|+-.|.|||.||.. ++....-+-+..++++.+.
T Consensus 38 ~~~DViIVGaGPAG---~~aA~~LA~~G~~VlllEr 70 (450)
T PLN00093 38 RKLRVAVIGGGPAG---ACAAETLAKGGIETFLIER 70 (450)
T ss_pred CCCeEEEECCCHHH---HHHHHHHHhCCCcEEEEec
Confidence 34579999999964 3333222234468888864
No 73
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=33.91 E-value=1.3e+02 Score=24.10 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=32.7
Q ss_pred HHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhC--CCCEEEEccch
Q 023900 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE--KIPVVPIPGAS 192 (275)
Q Consensus 144 ~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~--gi~veVIPGIS 192 (275)
+.+......+...+.++ .|||+.......+++.+.+. ++.+.+.-...
T Consensus 35 ~~~~~~~~~~~~~i~~~-ggep~~~~~~~~~i~~~~~~~~~~~~~i~T~~~ 84 (204)
T cd01335 35 DIVLEAKERGVEVVILT-GGEPLLYPELAELLRRLKKELPGFEISIETNGT 84 (204)
T ss_pred HHHHHHHhcCceEEEEe-CCcCCccHhHHHHHHHHHhhCCCceEEEEcCcc
Confidence 33434444566777774 89999998777778888776 67776664443
No 74
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=33.29 E-value=4.9e+02 Score=26.20 Aligned_cols=39 Identities=10% Similarity=-0.014 Sum_probs=27.1
Q ss_pred CeEEEEecCCCCccch-HHHHHHHHhhC-CEEEEcCCCCCH
Q 023900 81 PGLYLVATPIGNLEDI-TLRALRVLKSA-NVILSEDTRHSG 119 (275)
Q Consensus 81 g~l~iVGvGPGdpdlL-Tl~A~~~L~~A-DvVi~~~~~~~~ 119 (275)
..+.=||++++.|+.= -..+++++++. |+.+.=|+..+.
T Consensus 179 ADIIDIG~~st~p~~~~v~~~V~~l~~~~~~pISIDT~~~~ 219 (499)
T TIGR00284 179 ADMVALGTGSFDDDPDVVKEKVKTALDALDSPVIADTPTLD 219 (499)
T ss_pred CCEEEECCCcCCCcHHHHHHHHHHHHhhCCCcEEEeCCCHH
Confidence 3688999999877632 46677777775 777776765433
No 75
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=32.86 E-value=3.6e+02 Score=24.06 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEecCCCch
Q 023900 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARS 220 (275)
Q Consensus 141 e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~ 220 (275)
+..+.+.+.+.+.++|.++. .| .-+....++...+...|.++...........+++. +.-+|+.++ ++..+..
T Consensus 116 ~~l~~~~~~i~~a~~I~i~G-~G--~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~--~~~~Dv~I~--iS~sg~~ 188 (278)
T PRK11557 116 EKLHECVTMLRSARRIILTG-IG--ASGLVAQNFAWKLMKIGINAVAERDMHALLATVQA--LSPDDLLLA--ISYSGER 188 (278)
T ss_pred HHHHHHHHHHhcCCeEEEEe-cC--hhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHh--CCCCCEEEE--EcCCCCC
Confidence 44566777777788888883 55 33456677878888888888776555544444443 344566544 2333322
Q ss_pred h--HHHHHHhhcCCCeEEEEcC
Q 023900 221 R--TERLMLSANEVKTQIFYVP 240 (275)
Q Consensus 221 ~--~~~l~~l~~~~~tlVl~~~ 240 (275)
+ .+.++.+.+.+-.+|..+.
T Consensus 189 ~~~~~~~~~ak~~ga~iI~IT~ 210 (278)
T PRK11557 189 RELNLAADEALRVGAKVLAITG 210 (278)
T ss_pred HHHHHHHHHHHHcCCCEEEEcC
Confidence 1 2334444444444444443
No 76
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=32.16 E-value=76 Score=24.33 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=20.3
Q ss_pred EEEccCCCCCCC---chHHHHHHHhhhCC--CCEEEEccch
Q 023900 157 ALISDAGTPGIS---DPGTELAKLCVDEK--IPVVPIPGAS 192 (275)
Q Consensus 157 v~LS~~GDP~iy---s~~~~l~~~l~~~g--i~veVIPGIS 192 (275)
+.+ .+|.|+++ ....++++.+.+.+ +.+.+.-..+
T Consensus 51 v~~-~GGEPll~~~~~~l~~~i~~~~~~~~~~~i~i~TNg~ 90 (119)
T PF13394_consen 51 VVF-TGGEPLLYLNPEDLIELIEYLKERGPEIKIRIETNGT 90 (119)
T ss_dssp EEE-ESSSGGGSTTHHHHHHHHCTSTT-----EEEEEE-ST
T ss_pred EEE-ECCCCccccCHHHHHHHHHHHHhhCCCceEEEEeCCe
Confidence 555 38999987 33567777777766 5555555433
No 77
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=32.03 E-value=3.1e+02 Score=23.03 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=40.6
Q ss_pred EccchHHHHHHHhCCCCCccEEEEEEecCCCchhHHHHHHhhcCCCeEEEEcCCcCHHHHHHH
Q 023900 188 IPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEE 250 (275)
Q Consensus 188 IPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~~~~~l~~l~~~~~tlVl~~~~~~~~~i~~~ 250 (275)
-|-+--+..++.++|++.++..+++ ++..++..+.+.+-..+.+..+..+.+.++.
T Consensus 141 KP~p~~~~~~~~~~~~~p~~~l~vg-------D~~~di~aA~~aG~~~i~~~~~~~~~~~l~~ 196 (199)
T PRK09456 141 KPEARIYQHVLQAEGFSAADAVFFD-------DNADNIEAANALGITSILVTDKQTIPDYFAK 196 (199)
T ss_pred CCCHHHHHHHHHHcCCChhHeEEeC-------CCHHHHHHHHHcCCEEEEecCCccHHHHHHh
Confidence 4778889999999999999887773 1234566666667777777777776665543
No 78
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=31.97 E-value=3.5e+02 Score=25.50 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=21.9
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcC
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSED 114 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~ 114 (275)
+|++-+ ..-..+.+++++|++||+|++..
T Consensus 152 ~v~l~~----~~~~a~~~al~AI~~ADlIvlgP 180 (310)
T TIGR01826 152 RVRLEP----EDVPALREAVEAIREADLIILGP 180 (310)
T ss_pred EEEEeC----CCCCCCHHHHHHHHhCCEEEECC
Confidence 566655 22356799999999999998864
No 79
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.66 E-value=2.3e+02 Score=21.55 Aligned_cols=92 Identities=11% Similarity=0.107 Sum_probs=52.7
Q ss_pred HHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEecCCCch--
Q 023900 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARS-- 220 (275)
Q Consensus 143 ~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~-- 220 (275)
++++.+.+.+.++|.+.. .|. -+..+.++...+...|..++.+++.......... .+-++..++ ++..+..
T Consensus 3 i~~~~~~i~~~~~i~i~g-~g~--s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~--iS~~g~~~~ 75 (139)
T cd05013 3 LEKAVDLLAKARRIYIFG-VGS--SGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAAN--LTPGDVVIA--ISFSGETKE 75 (139)
T ss_pred HHHHHHHHHhCCEEEEEE-cCc--hHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHc--CCCCCEEEE--EeCCCCCHH
Confidence 445666666667777773 664 4466778888888888899999887654433332 333455444 2333322
Q ss_pred hHHHHHHhhcCCCeEEEEcCC
Q 023900 221 RTERLMLSANEVKTQIFYVPP 241 (275)
Q Consensus 221 ~~~~l~~l~~~~~tlVl~~~~ 241 (275)
-.+.++.+.+.+..+++....
T Consensus 76 ~~~~~~~a~~~g~~iv~iT~~ 96 (139)
T cd05013 76 TVEAAEIAKERGAKVIAITDS 96 (139)
T ss_pred HHHHHHHHHHcCCeEEEEcCC
Confidence 123344444445555554543
No 80
>PRK13059 putative lipid kinase; Reviewed
Probab=31.64 E-value=2.4e+02 Score=25.78 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=37.2
Q ss_pred HHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhh--CCCCEEEEccchHHHHHHHhCCCCC
Q 023900 146 VLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD--EKIPVVPIPGASAFVAALSASGLAT 205 (275)
Q Consensus 146 i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~--~gi~veVIPGISS~~aaaA~lGipl 205 (275)
..+.+.++.+++++ ..|| |+..+.++.+.+ .++++-++|.-| .+..|-.+|+|.
T Consensus 49 ~~~~~~~~~d~vi~-~GGD----GTv~evv~gl~~~~~~~~lgviP~GT-gNdfAr~lgi~~ 104 (295)
T PRK13059 49 AFKDIDESYKYILI-AGGD----GTVDNVVNAMKKLNIDLPIGILPVGT-ANDFAKFLGMPT 104 (295)
T ss_pred HHHHhhcCCCEEEE-ECCc----cHHHHHHHHHHhcCCCCcEEEECCCC-HhHHHHHhCCCC
Confidence 34555566677777 5999 555666666653 357899999977 466666778875
No 81
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=31.57 E-value=26 Score=33.97 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=21.3
Q ss_pred eeccccCCCCCCccchHhhhhhccC
Q 023900 50 YLLLCSCSQSQTSPDFSNLILEQSS 74 (275)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (275)
++++|||++.++..+|.+.+.+...
T Consensus 334 ~lv~~scs~~~~~~~f~~~v~~aa~ 358 (396)
T PRK15128 334 ILLTFSCSGLMTSDLFQKIIADAAI 358 (396)
T ss_pred EEEEEeCCCcCCHHHHHHHHHHHHH
Confidence 6788999999999999999877653
No 82
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=31.43 E-value=2e+02 Score=27.62 Aligned_cols=58 Identities=14% Similarity=0.246 Sum_probs=34.9
Q ss_pred HHHhhCCEEEEcCCCCCH----HHHhhccCCCcEEe-----cCCCCHHHHHHHHHHHhhCCCeEEEEc
Q 023900 102 RVLKSANVILSEDTRHSG----KLLQYYNIKTPLLS-----YHKFNESQREQTVLNRLKQGEIVALIS 160 (275)
Q Consensus 102 ~~L~~ADvVi~~~~~~~~----~lL~~~~~~~~~i~-----~~~~~~~e~~~~i~~~l~~G~~Vv~LS 160 (275)
+.|++-|+++..+ +.+- ++++....+..++. |.-.....+++.+++++++||.|.++.
T Consensus 4 ~~i~~~DiLlh~P-Y~sf~~vv~fl~eAA~DP~V~aIk~TLYR~a~~S~iv~aLi~AA~nGK~Vtv~v 70 (352)
T PF13090_consen 4 EQIRKKDILLHHP-YESFDPVVDFLREAAEDPDVLAIKITLYRVASNSPIVNALIEAAENGKQVTVLV 70 (352)
T ss_dssp HHHHHS-EEEECT-TB-TCHHHHHHHHHCC-TTEEEEEEEESSS-TT-HHHHHHHHHHHTT-EEEEEE
T ss_pred HHhhcCCEEEECC-ccccHHHHHHHHHHhcCCCccEEEEEEEecCCCCHHHHHHHHHHHcCCEEEEEE
Confidence 6789999999964 4321 23433333434432 222345678999999999999999984
No 83
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=31.40 E-value=2e+02 Score=26.74 Aligned_cols=57 Identities=21% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhCCCeE-EEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 023900 140 SQREQTVLNRLKQGEIV-ALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (275)
Q Consensus 140 ~e~~~~i~~~l~~G~~V-v~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~ 200 (275)
......+.++.++|++. |++ .-+-|..-| ..+++.|.+.|+++.+||= |++.+...+
T Consensus 126 ~tv~~~l~~a~~~~~~f~V~v-~EsrP~~~G--~~~a~~L~~~gI~vtlI~D-sa~~~~m~~ 183 (301)
T TIGR00511 126 EAALSVIKTAFEQGKDIEVIA-TETRPRKQG--HITAKELRDYGIPVTLIVD-SAVRYFMKE 183 (301)
T ss_pred HHHHHHHHHHHHcCCcEEEEE-ecCCCcchH--HHHHHHHHHCCCCEEEEeh-hHHHHHHHh
Confidence 33445556666677643 333 358897654 7889999999999999986 445554444
No 84
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=31.39 E-value=2e+02 Score=26.90 Aligned_cols=57 Identities=21% Similarity=0.151 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhCCCeE-EEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 023900 140 SQREQTVLNRLKQGEIV-ALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (275)
Q Consensus 140 ~e~~~~i~~~l~~G~~V-v~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~ 200 (275)
......+.++.++|++. |++ .-+.|..-| ..+++.|.+.|+++.+||= +++.+...+
T Consensus 131 ~tv~~~l~~A~~~~k~~~V~v-~EsrP~~~G--~~~a~~L~~~GI~vtlI~D-sav~~~m~~ 188 (310)
T PRK08535 131 SAALSVIKTAHEQGKDIEVIA-TETRPRNQG--HITAKELAEYGIPVTLIVD-SAVRYFMKD 188 (310)
T ss_pred HHHHHHHHHHHHCCCeEEEEE-ecCCchhhH--HHHHHHHHHCCCCEEEEeh-hHHHHHHHh
Confidence 34445566666677643 334 368897664 7788999999999999997 444554444
No 85
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=31.21 E-value=85 Score=24.64 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhh-CCCeEEEEccCCCCCC---CchHHHHHHHhhhCCC
Q 023900 140 SQREQTVLNRLK-QGEIVALISDAGTPGI---SDPGTELAKLCVDEKI 183 (275)
Q Consensus 140 ~e~~~~i~~~l~-~G~~Vv~LS~~GDP~i---ys~~~~l~~~l~~~gi 183 (275)
.+..+++++.+. .+..-+.++ +|+|++ +....++++.+++.+.
T Consensus 38 ~~~~~~ii~~~~~~~~~~i~l~-GGEPll~~~~~~l~~i~~~~k~~~~ 84 (139)
T PF13353_consen 38 EEIIEEIIEELKNYGIKGIVLT-GGEPLLHENYDELLEILKYIKEKFP 84 (139)
T ss_dssp HHHHHHHCHHHCCCCCCEEEEE-CSTGGGHHSHHHHHHHHHHHHHTT-
T ss_pred chhhhhhhhHHhcCCceEEEEc-CCCeeeeccHhHHHHHHHHHHHhCC
Confidence 455666666664 344455563 899999 6777888888888766
No 86
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=30.75 E-value=1.5e+02 Score=27.00 Aligned_cols=50 Identities=20% Similarity=0.116 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCC-CEEEEc
Q 023900 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKI-PVVPIP 189 (275)
Q Consensus 139 ~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi-~veVIP 189 (275)
.++..+.+......|-+-+.++ .|.|++.....++++.+.+.|+ .+.+.-
T Consensus 42 ~eei~~~i~~~~~~gi~~I~~t-GGEPll~~~l~~iv~~l~~~g~~~v~i~T 92 (302)
T TIGR02668 42 PEEIERIVRVASEFGVRKVKIT-GGEPLLRKDLIEIIRRIKDYGIKDVSMTT 92 (302)
T ss_pred HHHHHHHHHHHHHcCCCEEEEE-CcccccccCHHHHHHHHHhCCCceEEEEc
Confidence 3444333322333454556664 8999999888888888888777 665554
No 87
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=30.70 E-value=1.6e+02 Score=27.25 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhh-CCC-CEEEE-ccc--hHHHHHHHhCCCC
Q 023900 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD-EKI-PVVPI-PGA--SAFVAALSASGLA 204 (275)
Q Consensus 139 ~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~-~gi-~veVI-PGI--SS~~aaaA~lGip 204 (275)
.++..+.+....+.|-..+.++ .|+|++..-..++++.+.+ .|+ .+.+. -|. ..........|+.
T Consensus 45 ~eei~~~i~~~~~~gv~~V~lt-GGEPll~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~ 114 (334)
T TIGR02666 45 FEEIERLVRAFVGLGVRKVRLT-GGEPLLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLK 114 (334)
T ss_pred HHHHHHHHHHHHHCCCCEEEEE-CccccccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCC
Confidence 3444444444445565666775 8999999777888888776 466 56654 343 2233334444553
No 88
>PRK13337 putative lipid kinase; Reviewed
Probab=30.22 E-value=2.2e+02 Score=26.08 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=34.6
Q ss_pred HHhhCCCeEEEEccCCCCCCCchHHHHHHHhhh--CCCCEEEEccchHHHHHHHhCCCCC
Q 023900 148 NRLKQGEIVALISDAGTPGISDPGTELAKLCVD--EKIPVVPIPGASAFVAALSASGLAT 205 (275)
Q Consensus 148 ~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~--~gi~veVIPGISS~~aaaA~lGipl 205 (275)
+...++.+++++ ..|| |+..+.++.+.. ...++-++|+-|. ...+-.+|+|.
T Consensus 52 ~~~~~~~d~vvv-~GGD----GTl~~vv~gl~~~~~~~~lgiiP~GT~-NdfAr~lgi~~ 105 (304)
T PRK13337 52 RAVERKFDLVIA-AGGD----GTLNEVVNGIAEKENRPKLGIIPVGTT-NDFARALHVPR 105 (304)
T ss_pred HHHhcCCCEEEE-EcCC----CHHHHHHHHHhhCCCCCcEEEECCcCH-hHHHHHcCCCC
Confidence 333456677777 4999 555556665542 3467899999884 66667778875
No 89
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=30.09 E-value=4.1e+02 Score=23.90 Aligned_cols=95 Identities=11% Similarity=0.036 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEecCCCch
Q 023900 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARS 220 (275)
Q Consensus 141 e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~ 220 (275)
+..+++.+.+.+-++|.+.. .|. -+..+.++..++...|.++.+++.........+ .+.-+|+.++--.++...+
T Consensus 128 ~~l~~~~~~i~~A~~I~i~G-~G~--S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~--~~~~~Dl~I~iS~sG~t~~ 202 (292)
T PRK11337 128 DEFHRAARFFYQARQRDLYG-AGG--SAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAA--LLQEGDVVLVVSHSGRTSD 202 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEE-ecH--HHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHh--cCCCCCEEEEEeCCCCCHH
Confidence 44566777777777877773 553 344566777778778999988887765443333 3444576554112333322
Q ss_pred hHHHHHHhhcCCCeEEEEcC
Q 023900 221 RTERLMLSANEVKTQIFYVP 240 (275)
Q Consensus 221 ~~~~l~~l~~~~~tlVl~~~ 240 (275)
-.+.++.+.+.+-.+|.++.
T Consensus 203 ~~~~~~~ak~~g~~ii~IT~ 222 (292)
T PRK11337 203 VIEAVELAKKNGAKIICITN 222 (292)
T ss_pred HHHHHHHHHHCCCeEEEEeC
Confidence 22333444444544544443
No 90
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=30.09 E-value=3e+02 Score=26.36 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=53.4
Q ss_pred CCEEEEcCCCCCHHHHhhccCCCcEEec---CCCCHHHHHHHHHHHhhC-CCeEEEEccCCCCCCCchHHHHHHHhhhCC
Q 023900 107 ANVILSEDTRHSGKLLQYYNIKTPLLSY---HKFNESQREQTVLNRLKQ-GEIVALISDAGTPGISDPGTELAKLCVDEK 182 (275)
Q Consensus 107 ADvVi~~~~~~~~~lL~~~~~~~~~i~~---~~~~~~e~~~~i~~~l~~-G~~Vv~LS~~GDP~iys~~~~l~~~l~~~g 182 (275)
||+|+-..... +.......+++.. ...+.+...+.....++. +++|+++ +.+-++.....+.+.|+..|
T Consensus 76 ~D~iVH~GHs~----l~~~~~~~~Viyv~~~~~~d~~~~~~~~~~~l~~~~r~I~li---~t~q~~~~l~~~k~~L~~~g 148 (347)
T COG1736 76 VDLIVHYGHSC----LPPVEYELPVIYVFAFSRVDVDLVVLEATRELKKGSRRIGLI---TTAQHVHLLEEVKEILEGRG 148 (347)
T ss_pred ccEEEEccccc----CCCcCCCCcEEEeecccccchhHHHHHhhHhhccCCceEEEE---ecccchhHHHHHHHHhhcCC
Confidence 88888754322 2212223333321 222444445455555554 3458887 45677777788888898899
Q ss_pred CCEEEEccchHHHHHHHhCCCC
Q 023900 183 IPVVPIPGASAFVAALSASGLA 204 (275)
Q Consensus 183 i~veVIPGISS~~aaaA~lGip 204 (275)
+.+++.+|=+...+..--+|..
T Consensus 149 ~~v~i~~~~~r~~~~gqVLGC~ 170 (347)
T COG1736 149 YEVVIGRGQTRPAYPGQVLGCN 170 (347)
T ss_pred eEEEEeCCCCcccCcceeeccc
Confidence 9899999887654444444443
No 91
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=30.04 E-value=17 Score=21.79 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=13.4
Q ss_pred ccchhhhHHHHhhhCCCccccc
Q 023900 4 VQRLPLMANSLATTGLSKTSWQ 25 (275)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (275)
+.++|+||+.|...|+...-|.
T Consensus 6 L~K~kS~R~~L~e~g~~~~flk 27 (29)
T PF07966_consen 6 LKKFKSMRETLREKGTLEEFLK 27 (29)
T ss_dssp EEE---HHHHHHHTT-HHHHHC
T ss_pred ccCCchHHHHHHHcCchHHHHH
Confidence 3578999999999997654443
No 92
>PLN02335 anthranilate synthase
Probab=30.00 E-value=45 Score=29.51 Aligned_cols=36 Identities=14% Similarity=-0.018 Sum_probs=24.2
Q ss_pred hhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 023900 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (275)
Q Consensus 150 l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPG 190 (275)
-++.++|+++ |.||.+.|. +.+.|++.|++++|+|.
T Consensus 15 ~~~~~~ilvi-D~~dsft~~----i~~~L~~~g~~~~v~~~ 50 (222)
T PLN02335 15 SKQNGPIIVI-DNYDSFTYN----LCQYMGELGCHFEVYRN 50 (222)
T ss_pred cCccCcEEEE-ECCCCHHHH----HHHHHHHCCCcEEEEEC
Confidence 3556678888 877766553 45555566778888875
No 93
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=29.55 E-value=2.3e+02 Score=20.82 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=25.4
Q ss_pred HHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 023900 147 LNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (275)
Q Consensus 147 ~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPG 190 (275)
...+..++.|++.|..| .+.....+.|.+.|+++..+.|
T Consensus 55 ~~~~~~~~~ivv~C~~G-----~rs~~aa~~L~~~G~~~~~l~G 93 (100)
T cd01523 55 LDQLPDDQEVTVICAKE-----GSSQFVAELLAERGYDVDYLAG 93 (100)
T ss_pred HhhCCCCCeEEEEcCCC-----CcHHHHHHHHHHcCceeEEeCC
Confidence 34455677888887555 2445666777777887655555
No 94
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=29.52 E-value=3.8e+02 Score=25.99 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhh
Q 023900 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD 180 (275)
Q Consensus 138 ~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~ 180 (275)
+.++..+.+.+.++.|..|+++. .|| +......+.+.+.+
T Consensus 419 ~~~~a~~~a~~~a~~gD~vlv~G-~g~--~~~~~~~~~~~l~~ 458 (461)
T PRK00421 419 DLEDLAELLAEVLKPGDLVLTMG-AGD--ITKLARALLELLLK 458 (461)
T ss_pred CHHHHHHHHHHhcCCCCEEEEEC-CCC--HHHHHHHHHHHHhh
Confidence 34556666666666675555553 566 66666677666654
No 95
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=29.45 E-value=1.2e+02 Score=31.50 Aligned_cols=85 Identities=12% Similarity=0.188 Sum_probs=51.3
Q ss_pred HHHHHhhCCEEEEcCCCCCH-HHHh---hccCCCcEEec-----CCCCHHHHHHHHHHHhhCCCeEEEEccCCCCCCCch
Q 023900 100 ALRVLKSANVILSEDTRHSG-KLLQ---YYNIKTPLLSY-----HKFNESQREQTVLNRLKQGEIVALISDAGTPGISDP 170 (275)
Q Consensus 100 A~~~L~~ADvVi~~~~~~~~-~lL~---~~~~~~~~i~~-----~~~~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~ 170 (275)
.-++|++-|++++.+ +.+- .+++ ....+-.++.+ .-.+...+++.+++++++||.|.++.. +-.+
T Consensus 336 ~F~aIre~DiLlhHP-YeSF~~Vv~fl~qAA~DP~VLAIKqTLYRt~~dSpIV~ALi~AA~nGKqVtvlVE-----LkAR 409 (696)
T COG0855 336 IFDAIREGDILLHHP-YESFEPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVRALIDAAENGKQVTVLVE-----LKAR 409 (696)
T ss_pred HHHHHhhcCeEEECc-hhhhHHHHHHHHHhhcCCCeEEEEEEEEecCCCCHHHHHHHHHHHcCCeEEEEEE-----Ehhh
Confidence 568999999999964 4331 2333 22233344432 222446789999999999999999851 2233
Q ss_pred HHH-----HHHHhhhCCCCEEEEccch
Q 023900 171 GTE-----LAKLCVDEKIPVVPIPGAS 192 (275)
Q Consensus 171 ~~~-----l~~~l~~~gi~veVIPGIS 192 (275)
+.+ -++.|.+.|+ .||=|+.
T Consensus 410 FDEE~NI~WAk~LE~AGv--hVvyG~~ 434 (696)
T COG0855 410 FDEEANIHWAKRLERAGV--HVVYGVV 434 (696)
T ss_pred cChhhhhHHHHHHHhCCc--EEEeccc
Confidence 332 2456666664 4455543
No 96
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=29.17 E-value=38 Score=26.61 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=19.1
Q ss_pred hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEE
Q 023900 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPI 188 (275)
Q Consensus 151 ~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVI 188 (275)
++|.++++++ .|.- .....+.++.|.++|++++++
T Consensus 7 ~~g~di~iia-~G~~--~~~al~A~~~L~~~Gi~~~vi 41 (124)
T PF02780_consen 7 REGADITIIA-YGSM--VEEALEAAEELEEEGIKAGVI 41 (124)
T ss_dssp ESSSSEEEEE-ETTH--HHHHHHHHHHHHHTTCEEEEE
T ss_pred eCCCCEEEEe-ehHH--HHHHHHHHHHHHHcCCceeEE
Confidence 4567777774 5532 233445555566666555543
No 97
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=28.12 E-value=3.9e+02 Score=27.03 Aligned_cols=64 Identities=25% Similarity=0.330 Sum_probs=40.2
Q ss_pred CCcEEecCCCCHHHHHHHHHHHh-hCCC--eEEEEccCCCCCCCchHHHHHHHhhhCCCCE--EEEccchHHHHHH
Q 023900 128 KTPLLSYHKFNESQREQTVLNRL-KQGE--IVALISDAGTPGISDPGTELAKLCVDEKIPV--VPIPGASAFVAAL 198 (275)
Q Consensus 128 ~~~~i~~~~~~~~e~~~~i~~~l-~~G~--~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~v--eVIPGISS~~aaa 198 (275)
+..++.|+.. ..++.|+.++ ..|+ +|+++ | --|.+-| ..+++.|.+.|+++ ..|+++|-+....
T Consensus 360 gdviltyg~s---~vV~~ill~A~~~~k~frVvVV-D-SRP~~EG--~~~lr~Lv~~GinctYv~I~a~syim~ev 428 (556)
T KOG1467|consen 360 GDVLLTYGSS---SVVNMILLEAKELGKKFRVVVV-D-SRPNLEG--RKLLRRLVDRGINCTYVLINAASYIMLEV 428 (556)
T ss_pred CCEEEEecch---HHHHHHHHHHHHhCcceEEEEE-e-CCCCcch--HHHHHHHHHcCCCeEEEEehhHHHHHHhc
Confidence 3345555532 2344443333 3444 68888 6 5788775 78999999998876 5778887666433
No 98
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=28.10 E-value=1.7e+02 Score=23.01 Aligned_cols=51 Identities=25% Similarity=0.307 Sum_probs=28.3
Q ss_pred HHHHHHHHhhCCCeEEEEccC--CCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHH
Q 023900 142 REQTVLNRLKQGEIVALISDA--GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAAL 198 (275)
Q Consensus 142 ~~~~i~~~l~~G~~Vv~LS~~--GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaa 198 (275)
..+.+++.+.+++.|.+++|. |.|+ - ...+.+.+ .-++++|-|+.--...-
T Consensus 47 ~l~~~i~~~~~~~~vivltDl~GGSp~--n---~a~~~~~~-~~~~~vIsG~NLpmlle 99 (116)
T TIGR00824 47 KYNAALADLDTEEEVLFLVDIFGGSPY--N---AAARIIVD-KPHMDVIAGVNLPLLLE 99 (116)
T ss_pred HHHHHHHhcCCCCCEEEEEeCCCCCHH--H---HHHHHHhh-cCCEEEEEecCHHHHHH
Confidence 344445555567778888764 6553 1 11222222 23688999997544443
No 99
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=27.36 E-value=5e+02 Score=25.19 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=30.6
Q ss_pred HHHHHHHHhhC----CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchH
Q 023900 142 REQTVLNRLKQ----GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193 (275)
Q Consensus 142 ~~~~i~~~l~~----G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS 193 (275)
..+.+++.+.. ...|-++ .|- ..-+-..++.+.+.+.|+++.++|.+|.
T Consensus 140 a~~al~~~~~~~~~~~~~VNli--g~~-~~~~D~~ei~~lL~~~Gl~~~~~~d~s~ 192 (429)
T cd03466 140 AVRSIVKNIAVDPDKIEKINVI--AGM-MSPADIREIKEILREFGIEYILLPDTSE 192 (429)
T ss_pred HHHHHHHHhccCCCCCCcEEEE--CCC-CChhHHHHHHHHHHHcCCCeEEecCccc
Confidence 44455554422 2357777 232 2233457777888888999999898774
No 100
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=27.36 E-value=2.1e+02 Score=25.39 Aligned_cols=53 Identities=9% Similarity=0.157 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhh-CCCeEEEEccCCCCCCCch----HHHHHHHhhhCCCCEEEEccchHH
Q 023900 140 SQREQTVLNRLK-QGEIVALISDAGTPGISDP----GTELAKLCVDEKIPVVPIPGASAF 194 (275)
Q Consensus 140 ~e~~~~i~~~l~-~G~~Vv~LS~~GDP~iys~----~~~l~~~l~~~gi~veVIPGISS~ 194 (275)
.+.++.+.+.++ ++-+.+++ .||=.-++. ...+++.+.+.+.++-.+||=.--
T Consensus 17 ~~~le~l~~~~~~~~~D~vv~--~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GNhD~ 74 (224)
T cd07388 17 LEALEKLVGLAPETGADAIVL--IGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGPQDA 74 (224)
T ss_pred HHHHHHHHHHHhhcCCCEEEE--CCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCCCCh
Confidence 445666766654 35567777 499877763 234556666667889999998654
No 101
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=27.34 E-value=5.9e+02 Score=24.79 Aligned_cols=67 Identities=22% Similarity=0.155 Sum_probs=39.8
Q ss_pred HHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCC----EEEEccchHHHHHHHhCCCC--CccEEEE-EEecCCC
Q 023900 147 LNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIP----VVPIPGASAFVAALSASGLA--TDEFTFV-GFLPKHA 218 (275)
Q Consensus 147 ~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~----veVIPGISS~~aaaA~lGip--l~~~~~v-~~l~~~~ 218 (275)
...++.|.+++=.|...++ ...+-+.+.+.|+. +=+-||++++.++-+..-.. +.++.+. +-++.|+
T Consensus 86 ka~i~~gv~yvDts~~~~~-----~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~~i~si~iy~g~~g~~~ 159 (389)
T COG1748 86 KACIKTGVDYVDTSYYEEP-----PWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELFDEIESIDIYVGGLGEHG 159 (389)
T ss_pred HHHHHhCCCEEEcccCCch-----hhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhhccccEEEEEEecCCCCC
Confidence 3444566666666544444 14455556666642 33579999988887776665 5555443 4456665
No 102
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=27.26 E-value=3.1e+02 Score=21.51 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=48.5
Q ss_pred hHHHHHHHHhh-CCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHH
Q 023900 96 ITLRALRVLKS-ANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTEL 174 (275)
Q Consensus 96 LTl~A~~~L~~-ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l 174 (275)
+....++.|++ .++.+.. .....++.+.+ .+...+...... ...+.+++.+.+=|-|+..+ .|--.+ -
T Consensus 7 ~~~~~~~~l~~~~~v~~~~-~~~~~~~~~~l-~~~d~ii~~~~~--~~~~~~l~~~~~Lk~I~~~~-~G~d~i------d 75 (133)
T PF00389_consen 7 LPDEEIERLEEGFEVEFCD-SPSEEELAERL-KDADAIIVGSGT--PLTAEVLEAAPNLKLISTAG-AGVDNI------D 75 (133)
T ss_dssp -SHHHHHHHHHTSEEEEES-SSSHHHHHHHH-TTESEEEESTTS--TBSHHHHHHHTT-SEEEESS-SSCTTB-------
T ss_pred CCHHHHHHHHCCceEEEeC-CCCHHHHHHHh-CCCeEEEEcCCC--CcCHHHHhccceeEEEEEcc-cccCcc------c
Confidence 56677888888 6777775 22323333333 234443322211 12234555554444455553 453222 2
Q ss_pred HHHhhhCCCCEEEEccchHHHHH
Q 023900 175 AKLCVDEKIPVVPIPGASAFVAA 197 (275)
Q Consensus 175 ~~~l~~~gi~veVIPGISS~~aa 197 (275)
++.+.+.|+.|.-.||..+-..|
T Consensus 76 ~~~a~~~gI~V~n~~g~~~~aVA 98 (133)
T PF00389_consen 76 LEAAKERGIPVTNVPGYNAEAVA 98 (133)
T ss_dssp HHHHHHTTSEEEE-TTTTHHHHH
T ss_pred HHHHhhCeEEEEEeCCcCCcchh
Confidence 56778889999999998874444
No 103
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=26.57 E-value=38 Score=30.27 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=41.4
Q ss_pred cchhhhHHHHhhhCC-Cccccccccchhhhhhhhhccc-cccccceeeeccc
Q 023900 5 QRLPLMANSLATTGL-SKTSWQSRPLLSFLRTQTLLNS-LSLYPKINYLLLC 54 (275)
Q Consensus 5 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 54 (275)
+.++.+++.|...|+ ...-|++|.++.-+|.-++.+. ....||||.++.+
T Consensus 184 ~~~~~i~~~L~~~g~~~~~~~v~~~~~~~E~i~~~~~~~~~~~~Y~s~iiv~ 235 (241)
T PRK05990 184 RNLDKVRRVLAALGLLDRALYVERATMANQRIVPLAEVDPMASPYFSLILVP 235 (241)
T ss_pred CcHHHHHHHHHHcCCCCCEEEEEECCCCCeEEEEccccCCCCCCceEEEEEe
Confidence 678899999999995 5778999999999998877664 6778999977765
No 104
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=25.89 E-value=4.2e+02 Score=25.00 Aligned_cols=92 Identities=11% Similarity=-0.017 Sum_probs=51.1
Q ss_pred CccchHHH--HHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEccCCCCCCCc
Q 023900 92 NLEDITLR--ALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISD 169 (275)
Q Consensus 92 dpdlLTl~--A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys 169 (275)
.|.+|+.. +++.|.+.|.++..... ++-.. + ..+ + ...+..+ .....||++.++|. =+.-+
T Consensus 5 ~~~~~~~~~~~~e~l~~~DtfifDcDG----VlW~g--~-~~i--p--Gs~e~l~---~L~~~gK~i~fvTN---NStks 67 (306)
T KOG2882|consen 5 MPRLISKSEEARELLDSFDTFIFDCDG----VLWLG--E-KPI--P--GSPEALN---LLKSLGKQIIFVTN---NSTKS 67 (306)
T ss_pred chHHHhhHHHHHHHHhhcCEEEEcCCc----ceeec--C-CCC--C--ChHHHHH---HHHHcCCcEEEEeC---CCcch
Confidence 45566664 77899999999994321 22211 1 111 1 1122223 23345888888861 22223
Q ss_pred hHHHHHHHhhhCCCC-EEEEccchHHHHHHHhC
Q 023900 170 PGTELAKLCVDEKIP-VVPIPGASAFVAALSAS 201 (275)
Q Consensus 170 ~~~~l~~~l~~~gi~-veVIPGISS~~aaaA~l 201 (275)
-..+.+++.+.|+. +.=--.+||..++|..+
T Consensus 68 -r~~y~kK~~~lG~~~v~e~~i~ssa~~~a~yl 99 (306)
T KOG2882|consen 68 -REQYMKKFAKLGFNSVKEENIFSSAYAIADYL 99 (306)
T ss_pred -HHHHHHHHHHhCccccCcccccChHHHHHHHH
Confidence 34455667777766 65555667777777766
No 105
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=25.62 E-value=1.5e+02 Score=26.46 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCC-CCccEEEEEEecCCC
Q 023900 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGL-ATDEFTFVGFLPKHA 218 (275)
Q Consensus 140 ~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGi-pl~~~~~v~~l~~~~ 218 (275)
....+...+.++.|++|.+++ .|...-......+.+.+++.|..+-+-+|--...-+.....+ .+..+.+. +.+.
T Consensus 48 ~~H~e~a~~aL~aGkhVl~~s-~gAlad~e~~~~l~~aA~~~g~~l~i~sGai~g~d~l~a~~ig~~~~V~i~---~~k~ 123 (229)
T TIGR03855 48 EAVKEYAEKILKNGKDLLIMS-VGALADRELRERLREVARSSGRKVYIPSGAIGGLDALKAASLGRIERVVLT---TTKP 123 (229)
T ss_pred HHHHHHHHHHHHCCCCEEEEC-CcccCCHHHHHHHHHHHHhcCCEEEEChHHHHHHHHHHhcccCCceEEEEE---EecC
Confidence 445667778889999999995 675544455678888888888888766554333333322221 12344443 2222
Q ss_pred chhHHHHHHhhcCCCeEEEEcCC
Q 023900 219 RSRTERLMLSANEVKTQIFYVPP 241 (275)
Q Consensus 219 ~~~~~~l~~l~~~~~tlVl~~~~ 241 (275)
...|.. ......++|+++
T Consensus 124 ---p~~~~~--~~~~~~~~f~G~ 141 (229)
T TIGR03855 124 ---PASLGR--DIKEPTTIFEGS 141 (229)
T ss_pred ---hHHhcC--CCCCCEEEEEec
Confidence 234443 234456677764
No 106
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=25.57 E-value=1.6e+02 Score=25.47 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=24.3
Q ss_pred EEEEccCCCCCCCch-HHHHHHHhhhCCCCEEEEc
Q 023900 156 VALISDAGTPGISDP-GTELAKLCVDEKIPVVPIP 189 (275)
Q Consensus 156 Vv~LS~~GDP~iys~-~~~l~~~l~~~gi~veVIP 189 (275)
.+.++ .|+|++... ..++++.+++.|+.+.+.-
T Consensus 68 ~I~~~-GGEPll~~~~~~~li~~~~~~g~~~~i~T 101 (235)
T TIGR02493 68 GVTFS-GGEPLLQPEFLSELFKACKELGIHTCLDT 101 (235)
T ss_pred eEEEe-CcccccCHHHHHHHHHHHHHCCCCEEEEc
Confidence 34553 799999865 4588899988888776643
No 107
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=25.55 E-value=97 Score=25.46 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=10.5
Q ss_pred hHHHHHHHHhhCCEEEEc
Q 023900 96 ITLRALRVLKSANVILSE 113 (275)
Q Consensus 96 LTl~A~~~L~~ADvVi~~ 113 (275)
.|--..++++.||+|+..
T Consensus 59 ~t~dl~~a~~~ad~Iiia 76 (157)
T PF01210_consen 59 ATTDLEEALEDADIIIIA 76 (157)
T ss_dssp EESSHHHHHTT-SEEEE-
T ss_pred cccCHHHHhCcccEEEec
Confidence 343345678888888774
No 108
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=25.43 E-value=86 Score=24.92 Aligned_cols=46 Identities=13% Similarity=-0.008 Sum_probs=35.6
Q ss_pred CeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhC
Q 023900 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSAS 201 (275)
Q Consensus 154 ~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~l 201 (275)
|++++. .+|-...+. ..+++++|.+.|+++.++---++........
T Consensus 1 k~i~l~-vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~~ 46 (129)
T PF02441_consen 1 KRILLG-VTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPEG 46 (129)
T ss_dssp -EEEEE-E-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHHG
T ss_pred CEEEEE-EECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhhc
Confidence 456666 478888777 7788899999999999998888877777666
No 109
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=25.28 E-value=4.4e+02 Score=22.93 Aligned_cols=50 Identities=22% Similarity=0.145 Sum_probs=28.6
Q ss_pred HHHHhhCCCeEEEEccCCCCCCCch------HHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 023900 146 VLNRLKQGEIVALISDAGTPGISDP------GTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (275)
Q Consensus 146 i~~~l~~G~~Vv~LS~~GDP~iys~------~~~l~~~l~~~gi~veVIPGISS~~aaaA~ 200 (275)
+.+.+. +-++++++ .||+..+-. ....++..-+.| -++-|.|+-.++.+.
T Consensus 77 ~~~~l~-~ad~I~~~-GG~~~~~~~~l~~t~l~~~l~~~~~~G---~v~~G~SAGA~i~~~ 132 (217)
T cd03145 77 VVARLR-DADGIFFT-GGDQLRITSALGGTPLLDALRKVYRGG---VVIGGTSAGAAVMSD 132 (217)
T ss_pred HHHHHH-hCCEEEEe-CCcHHHHHHHHcCChHHHHHHHHHHcC---CEEEEccHHHHhhhh
Confidence 334443 35788884 999976622 122223222344 357899987777654
No 110
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=25.22 E-value=5.2e+02 Score=23.42 Aligned_cols=80 Identities=9% Similarity=0.002 Sum_probs=46.4
Q ss_pred CCCCEEEEccchHHHHHHHhCCCCCccEEEEEEecCCCchhHHHHHHhhcCCCeEEEEcCCcCH----HHHHHHHHhhcC
Q 023900 181 EKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKL----LQFLEETSLLFG 256 (275)
Q Consensus 181 ~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~~~~~l~~l~~~~~tlVl~~~~~~~----~~i~~~L~e~~~ 256 (275)
..+-++|.|-..|+. .+-.+|+|..+.... .-|... +.+..-+.+.+-.+++.+..... +|+ +...+ +
T Consensus 151 ~~~~~RvLP~~~~l~-~~~~~G~~~~~iia~-~gPfs~---e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi-~AA~~-l- 222 (256)
T TIGR00715 151 AVVFVRVLPYPQALA-QALKLGFPSDRIIAM-RGPFSE---ELEKALLREYRIDAVVTKASGEQGGELEKV-KAAEA-L- 222 (256)
T ss_pred ceEEEEECCCchhhH-HHHHcCCChhcEEEE-eCCCCH---HHHHHHHHHcCCCEEEEcCCCCccchHHHH-HHHHH-c-
Confidence 346788999988877 788899997766444 113322 22333333456677777766443 333 22222 2
Q ss_pred CCcEEEeEeccCC
Q 023900 257 YSRRCVIAREITK 269 (275)
Q Consensus 257 ~~~~v~V~e~Lt~ 269 (275)
.-+|+++++=-.
T Consensus 223 -gi~vivI~RP~~ 234 (256)
T TIGR00715 223 -GINVIRIARPQT 234 (256)
T ss_pred -CCcEEEEeCCCC
Confidence 467777776443
No 111
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=25.21 E-value=2.7e+02 Score=29.11 Aligned_cols=82 Identities=11% Similarity=0.240 Sum_probs=49.3
Q ss_pred HHHHHhhCCEEEEcCCCCCH-HHHhhc---cCCCcEEe-----cCCCCHHHHHHHHHHHhhCCCeEEEEcc---CCCCCC
Q 023900 100 ALRVLKSANVILSEDTRHSG-KLLQYY---NIKTPLLS-----YHKFNESQREQTVLNRLKQGEIVALISD---AGTPGI 167 (275)
Q Consensus 100 A~~~L~~ADvVi~~~~~~~~-~lL~~~---~~~~~~i~-----~~~~~~~e~~~~i~~~l~~G~~Vv~LS~---~GDP~i 167 (275)
--++|++=|+++..+ +.+- .+++.+ ..+..++. |.......+++.+.+++++|+.|.++.+ ..|-
T Consensus 323 iF~~I~~~DiLLh~P-Y~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~ii~aL~~Aa~~Gk~V~v~veLkArfde-- 399 (672)
T TIGR03705 323 IFDAIRKKDILLHHP-YESFDPVVEFLRQAAEDPDVLAIKQTLYRTSKDSPIIDALIEAAENGKEVTVVVELKARFDE-- 399 (672)
T ss_pred HHHHHhhcCEEEECC-ccCHHHHHHHHHHHhcCCCceEEEEEEEEecCCcHHHHHHHHHHHcCCEEEEEEEehhhccc--
Confidence 457888999999965 4432 233332 22322222 2112346788999999999999998853 2222
Q ss_pred CchHHHHHHHhhhCCCCE
Q 023900 168 SDPGTELAKLCVDEKIPV 185 (275)
Q Consensus 168 ys~~~~l~~~l~~~gi~v 185 (275)
+.-....++|++.|+.|
T Consensus 400 -~~ni~wa~~le~aG~~v 416 (672)
T TIGR03705 400 -EANIRWARRLEEAGVHV 416 (672)
T ss_pred -hhhHHHHHHHHHcCCEE
Confidence 22234456788788654
No 112
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=25.04 E-value=4.8e+02 Score=24.83 Aligned_cols=88 Identities=10% Similarity=0.018 Sum_probs=49.4
Q ss_pred CeEEEEecCCCCccchHHHHHHHH----hhC--CEEEEcCC--CCCHHHHhhccC--CCcEEecCCCCHHHHHHHHHHHh
Q 023900 81 PGLYLVATPIGNLEDITLRALRVL----KSA--NVILSEDT--RHSGKLLQYYNI--KTPLLSYHKFNESQREQTVLNRL 150 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L----~~A--DvVi~~~~--~~~~~lL~~~~~--~~~~i~~~~~~~~e~~~~i~~~l 150 (275)
-+|++|+++|-=-|-=..+|.+.+ +.. .+|+|.+. ...+.+|+.... +.+.+-+.+.+.+-..++|.+++
T Consensus 168 vTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSanldlDy~~ia~AA 247 (403)
T COG2069 168 VTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASANLDLDYERIAEAA 247 (403)
T ss_pred EEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeeccccccCHHHHHHHH
Confidence 479999999975555556665544 444 46777432 123456664432 23444333334444466777777
Q ss_pred hCCCeEEEEccCCCCCCC
Q 023900 151 KQGEIVALISDAGTPGIS 168 (275)
Q Consensus 151 ~~G~~Vv~LS~~GDP~iy 168 (275)
.+..++|+-...=|+..-
T Consensus 248 ~ky~H~VLswt~~D~N~q 265 (403)
T COG2069 248 LKYDHVVLSWTQMDVNMQ 265 (403)
T ss_pred HhcCceEEEeeccChHHH
Confidence 776676665434455443
No 113
>PF06842 DUF1242: Protein of unknown function (DUF1242); InterPro: IPR009653 This family consists of a number of eukaryotic proteins of around 72 residues in length. The function of this family is unknown.
Probab=24.95 E-value=15 Score=23.47 Aligned_cols=19 Identities=26% Similarity=0.745 Sum_probs=12.3
Q ss_pred eeccccCCCCCCc-cchHhh
Q 023900 50 YLLLCSCSQSQTS-PDFSNL 68 (275)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~~ 68 (275)
.++.|||||--.. |.+-|.
T Consensus 6 LL~ICTCtYir~~~P~l~dr 25 (36)
T PF06842_consen 6 LLLICTCTYIRSIFPSLLDR 25 (36)
T ss_pred HHHHHHhHhHHhHCcccccc
Confidence 3567999996543 655553
No 114
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=24.19 E-value=3.3e+02 Score=20.84 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=14.8
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhC
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSA 107 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~A 107 (275)
++|+++|.|.. ..+-......+...
T Consensus 1 ~~I~i~G~G~S--~~~a~~~~~~l~~~ 25 (128)
T cd05014 1 GKVVVTGVGKS--GHIARKIAATLSST 25 (128)
T ss_pred CeEEEEeCcHh--HHHHHHHHHHhhcC
Confidence 57999999953 33444444444433
No 115
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.12 E-value=1.6e+02 Score=22.49 Aligned_cols=57 Identities=18% Similarity=0.055 Sum_probs=33.2
Q ss_pred HHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCC
Q 023900 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGL 203 (275)
Q Consensus 143 ~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGi 203 (275)
.+.+...-++|++++++| -.+. .+-..+.++|.+.|+++..--=++|..+++..+.-
T Consensus 20 ~e~l~~L~~~g~~~~~lT--Nns~--~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~ 76 (101)
T PF13344_consen 20 VEALDALRERGKPVVFLT--NNSS--RSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKE 76 (101)
T ss_dssp HHHHHHHHHTTSEEEEEE--S-SS--S-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEe--CCCC--CCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHh
Confidence 344444445689999997 2222 22367778888889887544445555555555543
No 116
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=23.67 E-value=1.1e+02 Score=28.58 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=21.1
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcC
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSED 114 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~ 114 (275)
.++++.|. |.++ .-+.+++++|++||+|++..
T Consensus 160 ~~v~~~~~-~~~~-~~~p~~l~AI~~AD~IiigP 191 (300)
T PF01933_consen 160 RRVFLEGA-PEEA-KANPEALEAIEEADLIIIGP 191 (300)
T ss_dssp EEEEEECT-STT---B-HHHHHHHHH-SEEEE-S
T ss_pred cEEEEecC-cccc-CCCHHHHHHHHhCCEEEEcC
Confidence 46888877 4444 37899999999999777753
No 117
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=23.54 E-value=2.5e+02 Score=27.40 Aligned_cols=49 Identities=18% Similarity=0.087 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHhh----CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEE
Q 023900 138 NESQREQTVLNRLK----QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVP 187 (275)
Q Consensus 138 ~~~e~~~~i~~~l~----~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veV 187 (275)
+.++..+++.+... .|..|.+. -.|+|+.+.-..++++.+++.|+++-+
T Consensus 55 t~~evl~ev~~d~~~~~~~~ggVtis-GGGepl~~~~l~eLl~~lk~~gi~taI 107 (404)
T TIGR03278 55 PPQVVLGEVQTSLGFRTGRDTKVTIS-GGGDVSCYPELEELTKGLSDLGLPIHL 107 (404)
T ss_pred CHHHHHHHHHHHHHHhcCCCCEEEEE-CCcccccCHHHHHHHHHHHhCCCCEEE
Confidence 34566666655442 34455555 477999999999999999999988766
No 118
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=23.52 E-value=3.6e+02 Score=21.03 Aligned_cols=55 Identities=27% Similarity=0.316 Sum_probs=31.1
Q ss_pred HHHHHHHHhhCCCeEEEEccC--CCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCC
Q 023900 142 REQTVLNRLKQGEIVALISDA--GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202 (275)
Q Consensus 142 ~~~~i~~~l~~G~~Vv~LS~~--GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lG 202 (275)
.++.+++...+++.|.+++|. |.|+- ....+.....+++++.|++--...-+...
T Consensus 46 ~i~~~i~~~~~~~~viil~Dl~GGSp~n------~~~~~~~~~~~~~visG~nlpmlle~~~~ 102 (122)
T cd00006 46 KIKAALAELDSGEGVLILTDLFGGSPNN------AAARLSMEHPPVEVIAGVNLPMLLEAARA 102 (122)
T ss_pred HHHHHHHHhCCCCcEEEEEeCCCCCHHH------HHHHHHhcCCCEEEEEccCHHHHHHHHHc
Confidence 344445555556778888775 65531 22222222246889999987665555443
No 119
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=23.23 E-value=4.3e+02 Score=21.86 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=59.4
Q ss_pred HHHHHHhhCCCeEEEEcc-CCCCCCC-c------hHHHHHHHhhhCCCCEE-EE--------------ccchHHHHHHHh
Q 023900 144 QTVLNRLKQGEIVALISD-AGTPGIS-D------PGTELAKLCVDEKIPVV-PI--------------PGASAFVAALSA 200 (275)
Q Consensus 144 ~~i~~~l~~G~~Vv~LS~-~GDP~iy-s------~~~~l~~~l~~~gi~ve-VI--------------PGISS~~aaaA~ 200 (275)
+.+...-++|-+++++|. .|.+--+ . ....+.+.+...|+.+. ++ |-+..+..++..
T Consensus 36 e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~ 115 (161)
T TIGR01261 36 PALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKIKLLEPYLKK 115 (161)
T ss_pred HHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 334333356889999972 1222211 1 12244444566666653 32 777889999999
Q ss_pred CCCCCccEEEEEEecCCCchhHHHHHHhhcCCCeEEEEcCCc-CHHHHHHHH
Q 023900 201 SGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPH-KLLQFLEET 251 (275)
Q Consensus 201 lGipl~~~~~v~~l~~~~~~~~~~l~~l~~~~~tlVl~~~~~-~~~~i~~~L 251 (275)
.|+++++..++|- +..++..+...+-..+.+.... +..-+.++|
T Consensus 116 ~~~~~~e~l~IGD-------~~~Di~~A~~aGi~~i~~~~~~~~~~~~~~~~ 160 (161)
T TIGR01261 116 NLIDKARSYVIGD-------RETDMQLAENLGIRGIQYDEEELNWDMIAEEL 160 (161)
T ss_pred cCCCHHHeEEEeC-------CHHHHHHHHHCCCeEEEEChhhcCHHHHHHHh
Confidence 9999988888851 2345666656666666666553 444444443
No 120
>PRK06475 salicylate hydroxylase; Provisional
Probab=23.11 E-value=68 Score=30.36 Aligned_cols=33 Identities=9% Similarity=0.031 Sum_probs=22.4
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcC
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSED 114 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~ 114 (275)
|+++|.|||.||+ ++.+-.++.- +..++.+++.
T Consensus 1 ~~~~V~IvGgGia--Gl~~A~~L~~-~G~~V~i~E~ 33 (400)
T PRK06475 1 TRGSPLIAGAGVA--GLSAALELAA-RGWAVTIIEK 33 (400)
T ss_pred CCCcEEEECCCHH--HHHHHHHHHh-CCCcEEEEec
Confidence 4689999999997 4444444332 4568888864
No 121
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=22.80 E-value=3.8e+02 Score=21.01 Aligned_cols=46 Identities=13% Similarity=0.028 Sum_probs=31.8
Q ss_pred eEEEEccCCCCCCCchHHHHHHHhhhCC-----CCEEEEccchHHHHHHHhCCCCCc
Q 023900 155 IVALISDAGTPGISDPGTELAKLCVDEK-----IPVVPIPGASAFVAALSASGLATD 206 (275)
Q Consensus 155 ~Vv~LS~~GDP~iys~~~~l~~~l~~~g-----i~veVIPGISS~~aaaA~lGipl~ 206 (275)
+.+++ ..|| |+..+.+..+.+.+ .++-++|+-| ....+-.+|+|.+
T Consensus 51 d~vvv-~GGD----GTi~~vvn~l~~~~~~~~~~plgiiP~GT-gNdfar~lgi~~~ 101 (124)
T smart00046 51 DRVLV-CGGD----GTVGWVLNALDKRELPLPEPPVAVLPLGT-GNDLARSLGWGGG 101 (124)
T ss_pred CEEEE-Eccc----cHHHHHHHHHHhcccccCCCcEEEeCCCC-hhHHHHHcCCCCC
Confidence 45556 4899 55556666665443 6799999988 5666778888753
No 122
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=22.72 E-value=5.5e+02 Score=22.84 Aligned_cols=55 Identities=13% Similarity=-0.043 Sum_probs=33.1
Q ss_pred HHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhC
Q 023900 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSAS 201 (275)
Q Consensus 143 ~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~l 201 (275)
.+.+.+..++|++++++| |.+.-. -..+.+.+.+.|++++---=+||..+++..+
T Consensus 27 ~~al~~l~~~G~~~~~~T--n~~~~~--~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l 81 (257)
T TIGR01458 27 QEAVKRLRGASVKVRFVT--NTTKES--KQDLLERLQRLGFDISEDEVFTPAPAARQLL 81 (257)
T ss_pred HHHHHHHHHCCCeEEEEE--CCCCCC--HHHHHHHHHHcCCCCCHHHeEcHHHHHHHHH
Confidence 444444445799999996 766543 2356677777787764333345555555544
No 123
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=22.72 E-value=1.6e+02 Score=27.38 Aligned_cols=39 Identities=26% Similarity=0.179 Sum_probs=30.2
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccch
Q 023900 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (275)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGIS 192 (275)
|..++.++ .|+|++..-..++++.+.+.|..+.+.---+
T Consensus 72 g~~~V~i~-GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ 110 (318)
T TIGR03470 72 GAPVVSIP-GGEPLLHPEIDEIVRGLVARKKFVYLCTNAL 110 (318)
T ss_pred CCCEEEEe-CccccccccHHHHHHHHHHcCCeEEEecCce
Confidence 66677774 9999999888899999988887766654444
No 124
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=22.37 E-value=6.1e+02 Score=23.27 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=10.3
Q ss_pred hCCCeEEEEccCCCCCCCc
Q 023900 151 KQGEIVALISDAGTPGISD 169 (275)
Q Consensus 151 ~~G~~Vv~LS~~GDP~iys 169 (275)
..++.|+.+ .||=.++.
T Consensus 84 ~Pdr~VV~i--~GDG~f~~ 100 (277)
T PRK09628 84 NPDKHVIVV--SGDGDGLA 100 (277)
T ss_pred CCCCeEEEE--ECchHHHH
Confidence 445666666 37776654
No 125
>PRK07475 hypothetical protein; Provisional
Probab=22.12 E-value=3.1e+02 Score=24.49 Aligned_cols=131 Identities=15% Similarity=0.196 Sum_probs=68.8
Q ss_pred cceeeeccccCCCCCCccchHhhhhhccCCCCCCCCeEE-------EEecCCCCccchHHHHHHHHh--hCCEEEEcCCC
Q 023900 46 PKINYLLLCSCSQSQTSPDFSNLILEQSSKRGPLEPGLY-------LVATPIGNLEDITLRALRVLK--SANVILSEDTR 116 (275)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-------iVGvGPGdpdlLTl~A~~~L~--~ADvVi~~~~~ 116 (275)
+.+.++.|=+ -+|-++++++++.+-+-|..-++. +|.-+.-++-.--.+|.+.|+ .||.|+.+-.
T Consensus 14 ~~~gil~l~~-----~~p~~pgd~~~~~t~~~pv~~~~v~g~~~~~~~~~~~~~~~~~l~~aa~~L~~~G~d~I~~~Cg- 87 (245)
T PRK07475 14 ASIGILMLDT-----RFPRIPGDVGNAATWPFPVRYKVVRGATPERVVEGDDPSLLDAFVAAARELEAEGVRAITTSCG- 87 (245)
T ss_pred CceeEEEecc-----CCCCCCCCCCCcccCCcCEEEEeeCCCCHHHHhcCCCccHHHHHHHHHHHHHHcCCCEEEechH-
Confidence 3355555543 377788999999877766421111 122222233333366667766 5799988542
Q ss_pred CCHHHHhhcc--CCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCE-E---EEcc
Q 023900 117 HSGKLLQYYN--IKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPV-V---PIPG 190 (275)
Q Consensus 117 ~~~~lL~~~~--~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~v-e---VIPG 190 (275)
......+.+. .+.+++. .....++.+.+....+++|++++..|+ .+| -+.+.+.|++. . ++||
T Consensus 88 t~~~~~~~l~~~~~VPv~~----ss~~~v~~l~~~~~~~~kIGILtt~~t-~l~------~~~l~~~Gi~~~~~~~~~~g 156 (245)
T PRK07475 88 FLALFQRELAAALGVPVAT----SSLLQVPLIQALLPAGQKVGILTADAS-SLT------PAHLLAVGVPPDTSSLPIAG 156 (245)
T ss_pred HHHHHHHHHHHHcCCCEec----cHHHHHHHHHHhccCCCeEEEEeCCch-hhh------HHHHHhCCCCCCCccccccC
Confidence 2112222221 1344442 123334444444445789999974444 233 25567778863 3 6888
Q ss_pred chH
Q 023900 191 ASA 193 (275)
Q Consensus 191 ISS 193 (275)
..-
T Consensus 157 ~e~ 159 (245)
T PRK07475 157 LEE 159 (245)
T ss_pred ccc
Confidence 753
No 126
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=21.87 E-value=1.9e+02 Score=24.05 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=28.0
Q ss_pred HHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCE
Q 023900 145 TVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPV 185 (275)
Q Consensus 145 ~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~v 185 (275)
.|.+.+++.|+++++-.+.+|.=. .....+.|.+.|++|
T Consensus 8 ~i~~iL~~~K~IAvVG~S~~P~r~--sy~V~kyL~~~GY~V 46 (140)
T COG1832 8 DIAEILKSAKTIAVVGASDKPDRP--SYRVAKYLQQKGYRV 46 (140)
T ss_pred HHHHHHHhCceEEEEecCCCCCcc--HHHHHHHHHHCCCEE
Confidence 455566677888888556777655 377888898998655
No 127
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.73 E-value=1.9e+02 Score=19.82 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=25.0
Q ss_pred HHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccch
Q 023900 145 TVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (275)
Q Consensus 145 ~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGIS 192 (275)
.+..+.++|-+.+.+||-+. +++ ...+.+.+++.| +.++||+-
T Consensus 20 ~~~~a~~~g~~~v~iTDh~~--~~~-~~~~~~~~~~~g--i~~i~G~E 62 (67)
T smart00481 20 LVKRAKELGLKAIAITDHGN--LFG-AVEFYKAAKKAG--IKPIIGLE 62 (67)
T ss_pred HHHHHHHcCCCEEEEeeCCc--ccC-HHHHHHHHHHcC--CeEEEEEE
Confidence 34444467888777776653 333 234445555555 56799973
No 128
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=21.67 E-value=4e+02 Score=24.56 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchH
Q 023900 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193 (275)
Q Consensus 140 ~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS 193 (275)
......+..+.++|++.-++.+-.-|..- |..+.+.|.+.|+++.+|+=-+.
T Consensus 120 ~tv~~~l~~A~~~gk~~~V~v~EsrP~~q--G~~la~eL~~~GI~vtlI~Dsa~ 171 (275)
T PRK08335 120 SAVLEILKTAKRKGKRFKVILTESAPDYE--GLALANELEFLGIEFEVITDAQL 171 (275)
T ss_pred HHHHHHHHHHHHcCCceEEEEecCCCchh--HHHHHHHHHHCCCCEEEEeccHH
Confidence 34445566666678753333245778754 57779999999999999986553
No 129
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=21.66 E-value=2.2e+02 Score=27.99 Aligned_cols=39 Identities=10% Similarity=0.010 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhC--CCeEEEEccCCCCCCCch--HHHHHHHhhh
Q 023900 141 QREQTVLNRLKQ--GEIVALISDAGTPGISDP--GTELAKLCVD 180 (275)
Q Consensus 141 e~~~~i~~~l~~--G~~Vv~LS~~GDP~iys~--~~~l~~~l~~ 180 (275)
+.++.+++.+++ +-+-+++| .|||++.+. ..++++.+.+
T Consensus 141 eei~~~i~yI~~~p~I~~VlLS-GGDPLll~d~~L~~iL~~L~~ 183 (417)
T TIGR03820 141 EQILEGIEYIRNTPQIRDVLLS-GGDPLLLSDDYLDWILTELRA 183 (417)
T ss_pred HHHHHHHHHHHhcCCCCEEEEe-CCccccCChHHHHHHHHHHhh
Confidence 345556666654 44568886 999999865 4455676655
No 130
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=21.65 E-value=1.8e+02 Score=25.59 Aligned_cols=51 Identities=12% Similarity=-0.003 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHh---h-CCCeEEEEccCCCCCCCchH-HHHHHHhhhCCCCEEEEcc
Q 023900 138 NESQREQTVLNRL---K-QGEIVALISDAGTPGISDPG-TELAKLCVDEKIPVVPIPG 190 (275)
Q Consensus 138 ~~~e~~~~i~~~l---~-~G~~Vv~LS~~GDP~iys~~-~~l~~~l~~~gi~veVIPG 190 (275)
+.++..+.+.+.. + .|. -+-+| .|+|+++.-+ ..+.+.+++.|+.+-+.-.
T Consensus 20 t~eel~~~~~~~~~f~~~sgg-GVt~S-GGEPllq~~fl~~l~~~~k~~gi~~~leTn 75 (213)
T PRK10076 20 TLDALEREVMKDDIFFRTSGG-GVTLS-GGEVLMQAEFATRFLQRLRLWGVSCAIETA 75 (213)
T ss_pred CHHHHHHHHHhhhHhhcCCCC-EEEEe-CchHHcCHHHHHHHHHHHHHcCCCEEEECC
Confidence 3455555554321 1 223 35555 8999999764 6888889889988766543
No 131
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=21.32 E-value=5.1e+02 Score=24.44 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=18.2
Q ss_pred HHHHHhhhCCCCEEEEccchHHHHHHHhCC
Q 023900 173 ELAKLCVDEKIPVVPIPGASAFVAALSASG 202 (275)
Q Consensus 173 ~l~~~l~~~gi~veVIPGISS~~aaaA~lG 202 (275)
.+.+.+.+.++++-+.--.|++...+..++
T Consensus 192 ~~~~~l~~~~~d~v~FtS~stv~~f~~~l~ 221 (381)
T PRK07239 192 RLVDAIASRGLDAVTFTSAPAVAALLERAR 221 (381)
T ss_pred HHHHHHHcCCccEEEEcCHHHHHHHHHHHH
Confidence 444555555567777777777666665553
No 132
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=21.32 E-value=1.6e+02 Score=28.70 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHhhC-CCeEEEEccCCCCCCCch-HHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCC
Q 023900 138 NESQREQTVLNRLKQ-GEIVALISDAGTPGISDP-GTELAKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (275)
Q Consensus 138 ~~~e~~~~i~~~l~~-G~~Vv~LS~~GDP~iys~-~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGip 204 (275)
+.++..+.+.+.-+. |+...+++ |- +.+|. ..-.++.|.++|+...+|-|.|+-+..+|.++.-
T Consensus 66 ~~~~kl~ff~~~r~~fGrtAlvls--GG-g~~G~~h~Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~ 131 (391)
T cd07229 66 SSQAKLDFFHDTRQSFGRTALVLQ--GG-SIFGLCHLGVVKALWLRGLLPRIITGTATGALIAALVGVH 131 (391)
T ss_pred CHHHHHHHHHHHHHhcCCEEEEec--Cc-HHHHHHHHHHHHHHHHcCCCCceEEEecHHHHHHHHHHcC
Confidence 345555655554444 65555553 43 22332 2356788899999999999999988888888774
No 133
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=21.23 E-value=1.1e+02 Score=21.39 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=24.3
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEE
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVIL 111 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi 111 (275)
..|.+||.|..+++ +..|..++|.+.++=+
T Consensus 3 a~VsvVG~gm~~~g-v~~ki~~~L~~~~I~v 32 (66)
T cd04915 3 AIVSVIGRDLSTPG-VLARGLAALAEAGIEP 32 (66)
T ss_pred EEEEEECCCCCcch-HHHHHHHHHHHCCCCE
Confidence 46899999997775 8889999998876655
No 134
>PRK13054 lipid kinase; Reviewed
Probab=21.14 E-value=2.2e+02 Score=25.92 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=34.0
Q ss_pred HHhhCCCeEEEEccCCCCCCCchHHHHHHHhhh----CCCCEEEEccchHHHHHHHhCCCCC
Q 023900 148 NRLKQGEIVALISDAGTPGISDPGTELAKLCVD----EKIPVVPIPGASAFVAALSASGLAT 205 (275)
Q Consensus 148 ~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~----~gi~veVIPGISS~~aaaA~lGipl 205 (275)
+...++-+++++ ..|| |+..+.+..+.. ..+++-++|+-|. +..+-.+|+|.
T Consensus 51 ~~~~~~~d~vvv-~GGD----GTl~evv~~l~~~~~~~~~~lgiiP~GTg-Ndfar~lgi~~ 106 (300)
T PRK13054 51 EALALGVATVIA-GGGD----GTINEVATALAQLEGDARPALGILPLGTA-NDFATAAGIPL 106 (300)
T ss_pred HHHHcCCCEEEE-ECCc----cHHHHHHHHHHhhccCCCCcEEEEeCCcH-hHHHHhcCCCC
Confidence 333456677777 4999 444555555542 2468899999885 55556678874
No 135
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=21.04 E-value=1.8e+02 Score=27.19 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=26.1
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEc
Q 023900 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (275)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIP 189 (275)
-+++++- -.|.|+++.-..++++.+++.|+.+.++-
T Consensus 130 ~~~v~iS-l~GEPlL~p~l~eli~~~k~~Gi~~~L~T 165 (322)
T PRK13762 130 PKHVAIS-LSGEPTLYPYLPELIEEFHKRGFTTFLVT 165 (322)
T ss_pred CCEEEEe-CCccccchhhHHHHHHHHHHcCCCEEEEC
Confidence 3456665 46888888777788888888888776553
No 136
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=20.83 E-value=7e+02 Score=23.36 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=22.4
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCC
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDT 115 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~ 115 (275)
+|++.+.. -..+.+++++|++||+|++...
T Consensus 155 ~v~l~~~~----~~~~~~a~~AI~~AD~Iv~gPG 184 (308)
T cd07187 155 RVFLEPPD----PKANPEALEAIEEADLIVYGPG 184 (308)
T ss_pred EEEEECCC----CCCCHHHHHHHHhCCEEEECCC
Confidence 46665543 3478899999999999998643
No 137
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=20.81 E-value=3.1e+02 Score=27.09 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhh-CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHH
Q 023900 140 SQREQTVLNRLK-QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFV 195 (275)
Q Consensus 140 ~e~~~~i~~~l~-~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~ 195 (275)
++..++|.+.++ +|=+.|+|+ +..+..--.+..+++.+.+.||++..+--+..++
T Consensus 322 ~~~g~eIa~~Lk~dgVDAvILt-stCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~ 377 (431)
T TIGR01917 322 KQFAKEFSKELLAAGVDAVILT-STUGTCTRCGATMVKEIERAGIPVVHICTVTPIA 377 (431)
T ss_pred HHHHHHHHHHHHHcCCCEEEEc-CCCCcchhHHHHHHHHHHHcCCCEEEEeechhHH
Confidence 445666777665 567899994 8888988889999999999999998776665543
No 138
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=20.80 E-value=2.8e+02 Score=26.40 Aligned_cols=54 Identities=26% Similarity=0.177 Sum_probs=30.1
Q ss_pred HHHHHHHhh-CCCeEEEEc-cCCCCCCCchHHHHHHHhhhCCCCEEE-EccchHHHHH
Q 023900 143 EQTVLNRLK-QGEIVALIS-DAGTPGISDPGTELAKLCVDEKIPVVP-IPGASAFVAA 197 (275)
Q Consensus 143 ~~~i~~~l~-~G~~Vv~LS-~~GDP~iys~~~~l~~~l~~~gi~veV-IPGISS~~aa 197 (275)
.+.+.+.++ .|-.+.+.. ...+|.+. .....++.+++.+.++.| +=|-|.+-.+
T Consensus 44 ~~~v~~~L~~~gi~~~~f~~v~~~p~~~-~v~~~~~~~~~~~~D~IIaiGGGS~iD~a 100 (383)
T cd08186 44 WDKVEPALDEHGIEYVLYNKVTPNPTVD-QVDEAAKLGREFGAQAVIAIGGGSPIDSA 100 (383)
T ss_pred HHHHHHHHHHcCCeEEEeCCCCCCCCHH-HHHHHHHHHHHcCCCEEEEeCCccHHHHH
Confidence 455666654 354555552 12344443 345556667777777766 6666766655
No 139
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=20.77 E-value=6.7e+02 Score=23.11 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhCCCeEEEEccCC---CCCCCchHHHHHHHhhhCCCCEEEEccc-hHHHHHHHhCCCCCccEEEE
Q 023900 140 SQREQTVLNRLKQGEIVALISDAG---TPGISDPGTELAKLCVDEKIPVVPIPGA-SAFVAALSASGLATDEFTFV 211 (275)
Q Consensus 140 ~e~~~~i~~~l~~G~~Vv~LS~~G---DP~iys~~~~l~~~l~~~gi~veVIPGI-SS~~aaaA~lGipl~~~~~v 211 (275)
+...+.....++.|++++++| .| |+.+| ..+.+.+++.|-++.+-.|- --+....+...-.+.++.+.
T Consensus 73 ~av~e~~~~iL~~g~dlvv~S-vGALaD~~~~---~~l~~~A~~~g~~i~ipSGAigGlD~l~aa~~~~~~~v~~~ 144 (267)
T PRK13301 73 QAIAEHAEGCLTAGLDMIICS-AGALADDALR---ARLIAAAEAGGARIRVPAGAIAGLDYLQAVAGRDDAEVVYE 144 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEC-hhHhcCHHHH---HHHHHHHHhCCCEEEEeChHHHhHHHHHHhhccCceEEEEE
Confidence 444455556667899999998 44 33344 45556666667788887775 33333333333334455554
No 140
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=20.72 E-value=3.2e+02 Score=25.35 Aligned_cols=50 Identities=8% Similarity=-0.043 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCC-C-CEEEEc
Q 023900 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEK-I-PVVPIP 189 (275)
Q Consensus 139 ~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~g-i-~veVIP 189 (275)
.++....+.+..+.|-..+.++ .|.|++..-..++++.+.+.+ + .+.+.-
T Consensus 47 ~eei~~li~~~~~~Gv~~I~~t-GGEPllr~dl~~li~~i~~~~~l~~i~itT 98 (329)
T PRK13361 47 LEELAWLAQAFTELGVRKIRLT-GGEPLVRRGCDQLVARLGKLPGLEELSLTT 98 (329)
T ss_pred HHHHHHHHHHHHHCCCCEEEEE-CcCCCccccHHHHHHHHHhCCCCceEEEEe
Confidence 3444443333334565667775 899999988888888887754 3 454433
No 141
>PRK05637 anthranilate synthase component II; Provisional
Probab=20.58 E-value=92 Score=27.27 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=13.3
Q ss_pred eEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 023900 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (275)
Q Consensus 155 ~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPG 190 (275)
+|+++ |.||.+.|. +++.|++.|..++|+|-
T Consensus 3 ~il~i-D~~dsf~~n----l~~~l~~~g~~~~v~~~ 33 (208)
T PRK05637 3 HVVLI-DNHDSFVYN----LVDAFAVAGYKCTVFRN 33 (208)
T ss_pred EEEEE-ECCcCHHHH----HHHHHHHCCCcEEEEeC
Confidence 34555 555544443 22333333444444443
No 142
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=20.20 E-value=2.2e+02 Score=26.60 Aligned_cols=40 Identities=5% Similarity=0.053 Sum_probs=26.8
Q ss_pred HHHHHHHHhhC--CCeEEEEccCCCCCCCc--hHHHHHHHhhhCC
Q 023900 142 REQTVLNRLKQ--GEIVALISDAGTPGISD--PGTELAKLCVDEK 182 (275)
Q Consensus 142 ~~~~i~~~l~~--G~~Vv~LS~~GDP~iys--~~~~l~~~l~~~g 182 (275)
.++.+++.+++ |-.-+++| +|||++.+ ...++++.+.+.+
T Consensus 123 e~~~~i~~i~~~~~I~~VilS-GGDPl~~~~~~L~~ll~~l~~i~ 166 (321)
T TIGR03822 123 ELDAAFAYIADHPEIWEVILT-GGDPLVLSPRRLGDIMARLAAID 166 (321)
T ss_pred HHHHHHHHHHhCCCccEEEEe-CCCcccCCHHHHHHHHHHHHhCC
Confidence 34455555542 45668886 99999974 4567888887653
No 143
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=20.20 E-value=4.5e+02 Score=26.12 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=59.1
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhh-CCEEEEcCCCCCHHHHhh-cc---CCCcEEecCCCCHHHHHHHHHHHhhCC
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKS-ANVILSEDTRHSGKLLQY-YN---IKTPLLSYHKFNESQREQTVLNRLKQG 153 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~-ADvVi~~~~~~~~~lL~~-~~---~~~~~i~~~~~~~~e~~~~i~~~l~~G 153 (275)
+...+.-||..+|+|+.+ .++.+.+++ .|+-+.=++.. .++++. +. .....+.- .+ .+..+.+.+.+++.
T Consensus 126 ~~AD~IaL~~~s~dp~~v-~~~Vk~V~~~~dvPLSIDT~d-pevleaAleagad~~plI~S--at-~dN~~~m~~la~~y 200 (450)
T PRK04165 126 LKLDMVALRNASGDPEKF-AKAVKKVAETTDLPLILCSED-PAVLKAALEVVADRKPLLYA--AT-KENYEEMAELAKEY 200 (450)
T ss_pred ccCCEEEEeCCCCCHHHH-HHHHHHHHHhcCCCEEEeCCC-HHHHHHHHHhcCCCCceEEe--cC-cchHHHHHHHHHHc
Confidence 445789999999999977 445555554 56555544433 344442 21 22233321 12 23455565555543
Q ss_pred CeEEEEccCCCCCCCchHHHHHHHhhhCCC-CEEEEccchHHH
Q 023900 154 EIVALISDAGTPGISDPGTELAKLCVDEKI-PVVPIPGASAFV 195 (275)
Q Consensus 154 ~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi-~veVIPGISS~~ 195 (275)
...+++. .-| -....++++.+.+.|+ ++-+=||+..+.
T Consensus 201 g~pvVv~-~~d---l~~L~~lv~~~~~~GI~dIILDPg~ggf~ 239 (450)
T PRK04165 201 NCPLVVK-APN---LEELKELVEKLQAAGIKDLVLDPGTENIK 239 (450)
T ss_pred CCcEEEE-chh---HHHHHHHHHHHHHcCCCcEEECCCCchhh
Confidence 3333442 223 3445567777777777 566779887443
Done!