Query 023900
Match_columns 275
No_of_seqs 215 out of 1687
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:41:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kwp_A Predicted methyltransfe 100.0 2.9E-43 1E-47 323.6 20.7 200 75-274 10-209 (296)
2 1wyz_A Putative S-adenosylmeth 100.0 4.5E-42 1.5E-46 306.8 18.8 196 79-274 1-208 (242)
3 4e16_A Precorrin-4 C(11)-methy 100.0 2.4E-40 8.3E-45 297.4 21.5 195 79-274 3-204 (253)
4 3ndc_A Precorrin-4 C(11)-methy 100.0 1.7E-39 5.8E-44 293.9 20.8 190 81-274 4-203 (264)
5 1cbf_A Cobalt-precorrin-4 tran 100.0 5.3E-38 1.8E-42 286.6 23.5 193 81-274 21-220 (285)
6 1s4d_A Uroporphyrin-III C-meth 100.0 4.7E-38 1.6E-42 286.5 21.5 192 78-274 12-220 (280)
7 2ybo_A Methyltransferase; SUMT 100.0 2.1E-37 7.2E-42 284.2 22.2 190 80-274 24-229 (294)
8 3nut_A Precorrin-3 methylase; 100.0 1.5E-37 5.2E-42 278.8 20.3 195 76-274 4-210 (251)
9 1ve2_A Uroporphyrin-III C-meth 100.0 1.2E-37 4E-42 276.4 19.3 183 79-274 1-195 (235)
10 2qbu_A Precorrin-2 methyltrans 100.0 2.8E-36 9.4E-41 266.2 19.3 187 79-274 1-210 (232)
11 1pjq_A CYSG, siroheme synthase 100.0 9.8E-36 3.4E-40 288.0 21.8 191 79-274 214-418 (457)
12 1va0_A Uroporphyrin-III C-meth 100.0 6.2E-36 2.1E-40 265.9 17.8 182 81-274 1-195 (239)
13 2e0n_A Precorrin-2 C20-methylt 100.0 3.6E-35 1.2E-39 264.0 19.7 187 79-274 3-212 (259)
14 2zvb_A Precorrin-3 C17-methylt 100.0 2.7E-35 9.3E-40 270.5 18.2 191 81-274 2-222 (295)
15 3nd1_A Precorrin-6A synthase/C 100.0 1.1E-35 3.7E-40 270.6 10.5 189 75-274 16-236 (275)
16 1vhv_A Diphthine synthase; str 100.0 1E-33 3.5E-38 256.1 15.9 193 77-274 9-214 (268)
17 2z6r_A Diphthine synthase; met 100.0 1.6E-33 5.6E-38 254.0 15.9 189 82-274 2-216 (265)
18 3i4t_A Diphthine synthase; nia 100.0 3.3E-34 1.1E-38 262.8 10.3 191 80-274 20-249 (292)
19 2npn_A Putative cobalamin synt 100.0 4.6E-33 1.6E-37 249.3 15.1 180 81-274 3-215 (251)
20 1wde_A Probable diphthine synt 100.0 3.5E-32 1.2E-36 249.3 16.9 189 82-274 9-227 (294)
21 2bb3_A Cobalamin biosynthesis 100.0 2.8E-30 9.6E-35 227.6 13.6 175 79-274 20-194 (221)
22 3hh1_A Tetrapyrrole methylase 99.9 8.5E-28 2.9E-32 192.0 11.8 114 78-191 3-117 (117)
23 3ffy_A Putative tetrapyrrole ( 99.6 1E-15 3.5E-20 121.8 10.0 85 189-274 1-85 (115)
24 3mvn_A UDP-N-acetylmuramate:L- 77.0 17 0.00058 29.0 9.4 91 81-179 64-162 (163)
25 2fpr_A Histidine biosynthesis 67.3 19 0.00066 28.6 7.6 102 143-252 48-174 (176)
26 3gdw_A Sigma-54 interaction do 66.5 7.3 0.00025 30.9 4.7 55 138-197 43-102 (139)
27 3gx1_A LIN1832 protein; APC633 64.3 5.1 0.00017 31.4 3.3 55 138-197 43-100 (130)
28 2o8r_A Polyphosphate kinase; s 57.6 17 0.00057 36.6 6.4 90 100-191 336-433 (705)
29 1byr_A Protein (endonuclease); 55.3 34 0.0012 26.2 6.8 50 139-189 39-88 (155)
30 3sho_A Transcriptional regulat 55.2 76 0.0026 25.0 10.8 95 141-242 27-125 (187)
31 2pju_A Propionate catabolism o 44.3 89 0.003 26.5 8.2 105 91-204 46-174 (225)
32 2wm8_A MDP-1, magnesium-depend 43.1 1.2E+02 0.004 23.7 11.7 90 151-253 82-178 (187)
33 3ipr_A PTS system, IIA compone 40.6 48 0.0016 26.2 5.5 52 143-198 48-104 (150)
34 2d59_A Hypothetical protein PH 40.0 1.3E+02 0.0043 23.2 9.5 96 81-184 23-126 (144)
35 3kkj_A Amine oxidase, flavin-c 38.5 25 0.00087 27.7 3.6 33 79-114 1-33 (336)
36 1pdo_A Mannose permease; phosp 37.9 47 0.0016 25.6 5.0 54 139-196 41-97 (135)
37 1tq1_A AT5G66040, senescence-a 36.9 36 0.0012 25.7 4.1 54 143-205 72-127 (129)
38 1vee_A Proline-rich protein fa 36.0 1.3E+02 0.0045 22.5 7.4 90 95-190 6-107 (134)
39 3kwm_A Ribose-5-phosphate isom 35.4 85 0.0029 26.8 6.6 57 143-206 17-74 (224)
40 3dfz_A SIRC, precorrin-2 dehyd 32.3 1.5E+02 0.0052 25.0 7.7 88 81-188 32-121 (223)
41 3l7o_A Ribose-5-phosphate isom 31.5 52 0.0018 28.2 4.6 58 142-206 8-69 (225)
42 3mtq_A Putative phosphoenolpyr 31.2 95 0.0032 24.9 5.9 55 141-200 65-119 (159)
43 4hg2_A Methyltransferase type 30.3 1.6E+02 0.0056 24.9 7.7 93 79-180 39-154 (257)
44 3lfh_A Manxa, phosphotransfera 30.2 50 0.0017 26.0 4.0 51 143-200 50-103 (144)
45 1x92_A APC5045, phosphoheptose 29.5 2.1E+02 0.0072 22.6 9.6 52 141-195 33-90 (199)
46 2q5c_A NTRC family transcripti 28.4 2.4E+02 0.0082 22.9 10.0 68 92-164 37-104 (196)
47 2yva_A DNAA initiator-associat 28.2 2.2E+02 0.0075 22.4 8.7 48 141-191 29-82 (196)
48 1gmx_A GLPE protein; transfera 28.0 1.6E+02 0.0056 20.9 7.7 84 95-190 6-91 (108)
49 3bed_A PTS system, IIA compone 27.6 1.4E+02 0.0048 23.0 6.2 52 144-200 53-104 (142)
50 2ab1_A Hypothetical protein; H 27.4 93 0.0032 23.8 5.0 42 150-192 58-99 (122)
51 2duw_A Putative COA-binding pr 27.4 2.1E+02 0.0072 22.0 7.4 26 81-107 14-39 (145)
52 3hix_A ALR3790 protein; rhodan 26.4 1.4E+02 0.0047 21.4 5.7 56 142-205 41-97 (106)
53 3eme_A Rhodanese-like domain p 25.1 67 0.0023 22.9 3.6 48 150-205 53-100 (103)
54 3hhe_A Ribose-5-phosphate isom 25.0 1.5E+02 0.0051 25.8 6.4 57 143-206 32-91 (255)
55 3iix_A Biotin synthetase, puta 24.9 1E+02 0.0035 27.0 5.5 66 138-204 85-154 (348)
56 3ecs_A Translation initiation 23.1 2E+02 0.0068 25.7 7.1 55 140-197 132-186 (315)
57 2fsx_A RV0390, COG0607: rhodan 23.0 2.5E+02 0.0085 21.2 8.3 85 100-190 12-113 (148)
58 3lqk_A Dipicolinate synthase s 22.9 68 0.0023 26.8 3.7 35 153-188 7-41 (201)
59 2pjm_A Ribose-5-phosphate isom 22.8 97 0.0033 26.5 4.7 57 143-206 11-71 (226)
60 1tv8_A MOAA, molybdenum cofact 22.7 1.5E+02 0.0051 25.9 6.2 49 140-189 53-103 (340)
61 1xdp_A Polyphosphate kinase; P 22.6 76 0.0026 31.7 4.5 85 100-185 331-424 (687)
62 3g5j_A Putative ATP/GTP bindin 22.6 2.2E+02 0.0076 20.6 7.7 36 150-190 85-122 (134)
63 3foj_A Uncharacterized protein 22.6 72 0.0025 22.6 3.4 36 150-190 53-88 (100)
64 4ggj_A Mitochondrial cardiolip 22.3 1.3E+02 0.0046 24.4 5.4 48 138-188 70-117 (196)
65 2q5c_A NTRC family transcripti 22.0 3.2E+02 0.011 22.2 10.5 112 138-265 37-149 (196)
66 3op6_A Uncharacterized protein 21.4 2.3E+02 0.0078 21.9 6.5 35 172-206 5-41 (152)
67 2yci_X 5-methyltetrahydrofolat 21.4 4E+02 0.014 23.0 9.0 110 81-193 48-174 (271)
68 1m3s_A Hypothetical protein YC 21.3 2.9E+02 0.01 21.4 7.9 89 141-241 25-116 (186)
69 3s40_A Diacylglycerol kinase; 21.2 84 0.0029 27.4 4.2 49 151-205 61-111 (304)
70 1qxn_A SUD, sulfide dehydrogen 20.7 2.1E+02 0.0071 21.5 6.0 98 95-205 24-127 (137)
71 3mcu_A Dipicolinate synthase, 20.1 75 0.0026 26.7 3.4 40 153-193 5-44 (207)
72 3hyw_A Sulfide-quinone reducta 20.1 34 0.0012 31.3 1.3 34 79-114 1-35 (430)
73 3fst_A 5,10-methylenetetrahydr 20.0 1E+02 0.0035 27.4 4.5 60 141-205 164-231 (304)
No 1
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=100.00 E-value=2.9e-43 Score=323.62 Aligned_cols=200 Identities=45% Similarity=0.713 Sum_probs=182.7
Q ss_pred CCCCCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCC
Q 023900 75 KRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGE 154 (275)
Q Consensus 75 ~~~~~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~ 154 (275)
+...|+|+||+||+||||+++||+||+++|++||+|+++++++++++++.+..+++++.++++++++..+.+++.+++|+
T Consensus 10 ~~~~~~G~LylVG~GpG~~~~lT~rA~~~L~~aDvI~~edtr~~~~lL~~~~~~~~~i~~~~~~~~~~~~~li~~l~~G~ 89 (296)
T 3kwp_A 10 FQTETGGHLYLVPTPIGNLDDMTFRAVKTLTAVDLIAAEDTRNTQKLLNHFEITTKQISFHEHNTQERIPQLIAKLKQGM 89 (296)
T ss_dssp ----CCCEEEECCBCSSCGGGCCHHHHHHHHHSSEEEESCHHHHHHHHHHTTCCCEEEECSTTTHHHHHHHHHHHHHTTC
T ss_pred cccccCceEEEeccCCCCccchhhHHHHHHhHhhhhhhhccccHHHHhhheeeeeeeeehhhcchhhHhHHHHHHHhcCc
Confidence 33447899999999999999999999999999999999887777889999988888888988888889999999999999
Q ss_pred eEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEecCCCchhHHHHHHhhcCCCe
Q 023900 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKT 234 (275)
Q Consensus 155 ~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~~~~~l~~l~~~~~t 234 (275)
+||++||+|||+|||++.++++.+.+.|++|+++|||||+++|+|++|+||++|.|+|++|....++...|+.++....|
T Consensus 90 ~Va~lsdaGdP~i~~~g~~lv~~~~~~gi~v~viPGiSA~~aA~a~~Glp~~~f~f~g~~p~~~~~r~~~l~~l~~~~~t 169 (296)
T 3kwp_A 90 QIAQVSDAGMPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASGLAPQPFYFYGFLDRKPKDRKAEIAGLAQRPET 169 (296)
T ss_dssp EEEEECSSBCTTSSHHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHSSCCSSEEEEEECCSSHHHHHHHHHTTTTCCSE
T ss_pred eEEEeccCCCCCCCCCchHHHHHHHHcCCCeeeCCCcccchHHHHhccCCCCceeEEeeccCCcHHHHHHHHHhhcCCce
Confidence 99999779999999999999999999999999999999999999999999999999999876544456788898888999
Q ss_pred EEEEcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 235 QIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 235 lVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
+|||++++++.++++.|.+.++++++++|++++|+++|++
T Consensus 170 lV~y~~~~rl~~~l~~L~~~~g~~~~v~v~~~lt~~~E~i 209 (296)
T 3kwp_A 170 LIFYEAPHRLKKTLQNLAAGFGDERPAVLCRELTKRYEEF 209 (296)
T ss_dssp EEEEECGGGHHHHHHHHHHHHCTTCEEEEEESTTSTTCEE
T ss_pred eEeeeCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Confidence 9999999999999999988888789999999999999986
No 2
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=100.00 E-value=4.5e-42 Score=306.84 Aligned_cols=196 Identities=23% Similarity=0.423 Sum_probs=166.8
Q ss_pred CCCeEEEEecCCCCcc---chHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCc-----EEecCCCCHHHHHHHHHHHh
Q 023900 79 LEPGLYLVATPIGNLE---DITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-----LLSYHKFNESQREQTVLNRL 150 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpd---lLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~-----~i~~~~~~~~e~~~~i~~~l 150 (275)
|+|+||+||+|||||+ +||+||+++|++||+|++++++.++++++.+..+++ .+.+++.++++..+.+++.+
T Consensus 1 M~G~ly~VG~GpGd~~~~dLlTlrA~~~L~~aDvI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (242)
T 1wyz_A 1 METALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPL 80 (242)
T ss_dssp -CCSEEEECCCSSSSCHHHHSCTHHHHHHTTCCEEEESCHHHHHHHHHHHCSSSCTTCCCCEECCSSCCHHHHHHHHHHH
T ss_pred CCceEEEEecCCCCCcccCccCHHHHHHHHhCCEEEEeCCcchHHHHHhcCCCCceeeeeeecccccCHHHHHHHHHHHH
Confidence 5689999999999998 799999999999999999887777888887765444 45566666777889999999
Q ss_pred hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEecCCCchhHHHHHHhhc
Q 023900 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSAN 230 (275)
Q Consensus 151 ~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~~~~~l~~l~~ 230 (275)
++|++||++|++|||++||++.++++.+.+.|+++++||||||+++|+|++|+|+++|.|+|++|....++.+.|+.+++
T Consensus 81 ~~G~~Va~ls~~GdP~i~~~g~~l~~~l~~~gi~vevIPGiSs~~aa~a~~G~p~~~f~~~g~~p~~~~~~~~~l~~l~~ 160 (242)
T 1wyz_A 81 AGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQ 160 (242)
T ss_dssp HTTCCEEEECC-------CHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHTSCSSSEEEEEECCSSTTHHHHHHHHHHH
T ss_pred HcCCEEEEEecCCCCcccCcHHHHHHHHHHCCCCEEEeCcHHHHHHHHHHcCCCCCeEEEEEEcCCCccchHHHHHHHhc
Confidence 99999999977899999999999999999999999999999999999999999999999999887654334467777777
Q ss_pred C----CCeEEEEcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 231 E----VKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 231 ~----~~tlVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
. ..|+|||++++++.++++.|.+.+++++++++++|+|+++|++
T Consensus 161 ~~~~~~~t~vl~~~~~~~~~~~~~l~~~~~~~~~v~vv~~~t~~~E~i 208 (242)
T 1wyz_A 161 RVYAESQTQLFIETPYRNHKMIEDILQNCRPQTKLCIAANITCEGEFI 208 (242)
T ss_dssp HHHHHTCEEEEEECGGGHHHHHHHHHHHSCSSSEEEEEESTTSSSCEE
T ss_pred ccccCCCeEEEEEcHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCcEE
Confidence 6 8999999999999999999988788899999999999999986
No 3
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=100.00 E-value=2.4e-40 Score=297.41 Aligned_cols=195 Identities=14% Similarity=0.166 Sum_probs=169.3
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEE
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~ 158 (275)
|+|+||+||+|||||++||+||+++|++||+|+++++++++.+++.+..+++++..+.+++++..+.+.+.+++|++||+
T Consensus 3 ~~g~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V~~ 82 (253)
T 4e16_A 3 AMNKVHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKEDCQIHNSAHMDLQEIIDVMREGIENNKSVVR 82 (253)
T ss_dssp -CCCEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCGGGGGGSCTTCEEEEGGGCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 57999999999999999999999999999999998878877888888777777766556788889999999999999999
Q ss_pred EccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------ccEEEEEEecCCCchhHHHHHHhhcCC
Q 023900 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSRTERLMLSANEV 232 (275)
Q Consensus 159 LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl------~~~~~v~~l~~~~~~~~~~l~~l~~~~ 232 (275)
++ +|||++||++.++++.+.+.|+++++||||||+++|+|++|+|| +++.++++......+....|+.++..+
T Consensus 83 l~-~GDP~i~~~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~ 161 (253)
T 4e16_A 83 LQ-TGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGAASSLGVEYTVPEISQSVIITRMEGRTPVPEKESIQSYAKHQ 161 (253)
T ss_dssp EE-SBCTTTTCCHHHHHHHHHHHTCCEEEECCCCHHHHHHHHHTCCSCBTTTBSCEEEEEC---CCCCGGGSHHHHHTTC
T ss_pred Ee-CCCCccccCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHhCCCcccCCccceEEEEeccCCCCcchHHHHHHHhcCC
Confidence 95 99999999999999999999999999999999999999999999 567776432221111224678888888
Q ss_pred CeEEEEcCCcCHHHHHHHHHh-hcCCCcEEEeEeccCCcCccc
Q 023900 233 KTQIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 233 ~tlVl~~~~~~~~~i~~~L~e-~~~~~~~v~V~e~Lt~~~E~i 274 (275)
.|+|+|++++++.++++.|.+ +++++++++|++++|+++|++
T Consensus 162 ~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i 204 (253)
T 4e16_A 162 TSMVIFLSVQEIEKVVSKLLEGGYPKDTPIAVIYKATWADEKI 204 (253)
T ss_dssp SEEEEEECSTTHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEE
T ss_pred CeEEEECcHHHHHHHHHHHHhcCCCCCCeEEEEEeCCCCCcEE
Confidence 999999999999999999999 588899999999999999986
No 4
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=100.00 E-value=1.7e-39 Score=293.90 Aligned_cols=190 Identities=17% Similarity=0.135 Sum_probs=169.5
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEc
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS 160 (275)
++||+||+|||||++||+||+++|++||+|+|+++++++++++.+..+++++.++.++++++.+.+.+.+++|++||+|+
T Consensus 4 m~l~iVG~GpG~~~lLT~~A~~~L~~AdvV~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~Va~L~ 83 (264)
T 3ndc_A 4 MTVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAAGQDVARLH 83 (264)
T ss_dssp CCEEEEECBSSCGGGSBHHHHHHHHHCSEEEECSTTSCGGGGGGSCTTCEEEECTTSCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cEEEEEEcCCCChHHHHHHHHHHHHcCCEEEEECCCCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 48999999999999999999999999999999888888888888877888887776788899999999999999999995
Q ss_pred cCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------ccEEEEEEecCCCc----hhHHHHHHhhc
Q 023900 161 DAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHAR----SRTERLMLSAN 230 (275)
Q Consensus 161 ~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl------~~~~~v~~l~~~~~----~~~~~l~~l~~ 230 (275)
+|||++||++.++++.+.+.|++++|||||||+++|+|++|+|| +++.+++ .|++ +..+.|+.+++
T Consensus 84 -~GDP~iyg~~~~l~~~l~~~gi~veviPGiSs~~aaaA~lG~plt~~~~~~~~~~~s---~~~~~~~~~~~~~l~~l~~ 159 (264)
T 3ndc_A 84 -SGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILTR---TSGRASAMPAGETLENFAR 159 (264)
T ss_dssp -SBCTTSSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHTCCSCBTTTBCCEEEEE---CCTTTCCCCTTCCHHHHHT
T ss_pred -CCCCccccHHHHHHHHHHhCCCCEEEeCCHHHHHHHHHHhCCCccCCCceeEEEEEe---ccCCCCCcchHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999 4566653 3332 11236788888
Q ss_pred CCCeEEEEcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 231 EVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 231 ~~~tlVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
.+.|+|||++.+++.++++.|++.++++++++|++++|+++|++
T Consensus 160 ~~~tlvl~~~~~~~~~i~~~L~~~~~~~~~v~v~~~l~~~~E~i 203 (264)
T 3ndc_A 160 TGAVLAIHLSVHVLDEVVQKLVPHYGEDCPVAIVWRASWPDQRV 203 (264)
T ss_dssp TTCEEEEESCGGGHHHHHHHHHHHHCTTCEEEEEESTTSTTCEE
T ss_pred CCCcEEEecCHHHHHHHHHHHHhhCCCCCEEEEEEECCCCCeEE
Confidence 88999999999999999999998878899999999999999986
No 5
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=100.00 E-value=5.3e-38 Score=286.55 Aligned_cols=193 Identities=19% Similarity=0.241 Sum_probs=168.4
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEc
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS 160 (275)
++||+||+|||||++||++|+++|++||+|+|++++.++++++.+..+++++....+++++..+.+.+.+++|++||+|+
T Consensus 21 ~~l~lVG~GpGd~~~LT~~A~~~L~~AdvV~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~Vv~L~ 100 (285)
T 1cbf_A 21 MKLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKTAGMHLEEMVGTMLDRMREGKMVVRVH 100 (285)
T ss_dssp SEEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCHHHHTTSCTTCEEEECTTCCHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 48999999999999999999999999999999888888888888777777776666678888999999999999999995
Q ss_pred cCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------ccEEEEEEecCCCchhHHHHHHhhcCCCe
Q 023900 161 DAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSRTERLMLSANEVKT 234 (275)
Q Consensus 161 ~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl------~~~~~v~~l~~~~~~~~~~l~~l~~~~~t 234 (275)
+|||++||++.++++.+.+.|+++++||||||+++|+|++|+|| +++.++++.......+.+.|..++....|
T Consensus 101 -~GDP~i~g~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~pl~~~~~~~~~~~~~~~g~~~~~~~~~l~~l~~~~~t 179 (285)
T 1cbf_A 101 -TGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAAAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAKHKCT 179 (285)
T ss_dssp -SBCTTTTCCCHHHHHHHHHTTCEEEEECCCCHHHHHHHHTTCCSCBTTTBCCEEEEECCSSSCCCGGGCHHHHHTTCSE
T ss_pred -CCCccccccHHHHHHHHHHCCCcEEEECCchHHHHHHHHcCCCcccCCcceeEEEeccCCCCCcchHHHHHHHhcCCCe
Confidence 89999999999999999999999999999999999999999998 46666643221111123457778888899
Q ss_pred EEEEcCCcCHHHHHHHHHh-hcCCCcEEEeEeccCCcCccc
Q 023900 235 QIFYVPPHKLLQFLEETSL-LFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 235 lVl~~~~~~~~~i~~~L~e-~~~~~~~v~V~e~Lt~~~E~i 274 (275)
+|+|++++++.++++.|.+ +++++++++|++++|+++|++
T Consensus 180 lvl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~lg~~~E~i 220 (285)
T 1cbf_A 180 IALFLSSTLTKKVMKEFINAGWSEDTPVVVVYKATWPDEKI 220 (285)
T ss_dssp EEEESCTTCHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEE
T ss_pred EEEECcHHHHHHHHHHHHhcCCCCCCeEEEEEECCcCCcEE
Confidence 9999999999999999998 588899999999999999986
No 6
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=100.00 E-value=4.7e-38 Score=286.48 Aligned_cols=192 Identities=17% Similarity=0.177 Sum_probs=166.2
Q ss_pred CCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecC------CCCHHHHHHHHHHHhh
Q 023900 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH------KFNESQREQTVLNRLK 151 (275)
Q Consensus 78 ~~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~------~~~~~e~~~~i~~~l~ 151 (275)
+.+|+||+||+|||||++||+||+++|++||+|+| ++++++++++.+..+++++..+ ..+++++.+.+.+.++
T Consensus 12 ~~~g~l~lVG~GpGd~~lLTl~A~~~L~~ADvV~~-d~~~~~~ll~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~~ 90 (280)
T 1s4d_A 12 LEKGSVWLVGAGPGDPGLLTLHAANALRQADVIVH-DALVNEDCLKLARPGAVLEFAGKRGGKPSPKQRDISLRLVELAR 90 (280)
T ss_dssp CCSSCEEEEECBSSCTTSSBHHHHHHHHHCSEEEE-CSCSCTTGGGGSSTTCCEEECSCCC--CCCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHHHhCCEEEE-cCCCCHHHHHhccCCCEEEeccccccccccCHHHHHHHHHHHHh
Confidence 34589999999999999999999999999999999 6678888898887777776532 3467788888999999
Q ss_pred CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------cEEEEEEecCCCchh----
Q 023900 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSR---- 221 (275)
Q Consensus 152 ~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~------~~~~v~~l~~~~~~~---- 221 (275)
+|++||+++ .|||++||++.++++.+.+.|++++|||||||+++|+|++|+||+ ++.|+ +.|+++.
T Consensus 91 ~G~~Vv~L~-~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~~~~~---~~~~~~~~~~~ 166 (280)
T 1s4d_A 91 AGNRVLRLK-GGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFL---TGHDSSGLVPD 166 (280)
T ss_dssp TTCCEEEEE-SBCTTSSSSHHHHHHHHHTTTCCEEEECCCCTTTHHHHHTTCCSCCTTTCSEEEEE---ECCC-------
T ss_pred CCCeEEEEc-CCCCccccCHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCccCCCcccEEEEE---CCcCCcccccc
Confidence 999999995 899999999999999999999999999999999999999999995 55555 6665421
Q ss_pred HHHHHHhhcCCCeEEEEcCCcCHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 222 TERLMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 222 ~~~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
...|+.++....|+|||++.+++.++++.|.+. ++++++++|++++|+++|++
T Consensus 167 ~~~~~~l~~~~~tlVl~~~~~~~~~i~~~L~~~G~~~~~~v~v~~~l~~~~E~i 220 (280)
T 1s4d_A 167 RINWQGIASGSPVIVMYMAMKHIGAITANLIAGGRSPDEPVAFVCNAATPQQAV 220 (280)
T ss_dssp CCCHHHHHTTCSEEEEESCSTTHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEE
T ss_pred cccHHHHhCCCCeEEEECchhhHHHHHHHHHhcCCCCCCEEEEEEeCCCCCeEE
Confidence 124777777889999999999999999999986 88899999999999999986
No 7
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=100.00 E-value=2.1e-37 Score=284.16 Aligned_cols=190 Identities=18% Similarity=0.218 Sum_probs=165.0
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEec------CCCCHHHHHHHHHHHhhCC
Q 023900 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLKQG 153 (275)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~------~~~~~~e~~~~i~~~l~~G 153 (275)
+|+||+||+|||||++||+||+++|++||+|++ ++++++++++.+..+++.+.. +..++++..+.+.+.+++|
T Consensus 24 ~g~l~lVG~GpGdp~lLTlrA~~~L~~ADvV~~-d~~~~~~il~~~~~~~~~i~~~k~~~~~~~~~~~i~~~l~~~~~~G 102 (294)
T 2ybo_A 24 AGSVALVGAGPGDPGLLTLRAWALLQQAEVVVY-DRLVARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLARQQ 102 (294)
T ss_dssp TTCEEEEEEESSCGGGSCHHHHHHHTTCSEEEE-CTTSCHHHHHHSCTTSEEEECC--------CHHHHHHHHHHHHHTT
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHcCCEEEE-cCCCCHHHHHhcccCCeEEecccccccccCCHHHHHHHHHHHHHCC
Confidence 589999999999999999999999999999999 567888899988766555432 2235677888899999999
Q ss_pred CeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------ccEEEEEEecCCCch---hHHH
Q 023900 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARS---RTER 224 (275)
Q Consensus 154 ~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl------~~~~~v~~l~~~~~~---~~~~ 224 (275)
++|++| ++|||++||++.++++.+.+.|++++|||||||+++|+|++|+|| +++.|+ +.|+.. +...
T Consensus 103 ~~Vv~L-~~GDP~i~g~g~~l~~~l~~~gi~vevIPGiSS~~aa~a~~Giplt~~~~~~~~~~~---sg~~~~~~~~~~~ 178 (294)
T 2ybo_A 103 RRVVRL-KGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFV---TGHLQNDGRLDLD 178 (294)
T ss_dssp CCEEEE-EEBCTTSSSSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCSCBTTTBSCEEEE---ECSCCTTSSCCCC
T ss_pred CeEEEE-cCCCCCccCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHcCCCcccCCCCcEEEEE---cccCCcccchhhH
Confidence 999999 799999999999999999999999999999999999999999999 578877 444321 1235
Q ss_pred HHHhhcCCCeEEEEcCCcCHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 225 LMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 225 l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
|+.+.....|+|||++.+++.++++.|.+. ++++++++|++++|+++|++
T Consensus 179 ~~~l~~~~~tlVl~~~~~~~~~i~~~L~~~G~~~~~~v~v~~~l~~~~E~i 229 (294)
T 2ybo_A 179 WAGLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQV 229 (294)
T ss_dssp HHHHTSSSCEEEEESCGGGHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEE
T ss_pred HHHHhcCCCeEEEECcHHHHHHHHHHHHhcCCCCCCEEEEEEeCCCCceEE
Confidence 788888889999999999999999999986 88899999999999999986
No 8
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.5e-37 Score=278.79 Aligned_cols=195 Identities=18% Similarity=0.173 Sum_probs=153.1
Q ss_pred CCCCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCe
Q 023900 76 RGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (275)
Q Consensus 76 ~~~~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~ 155 (275)
+-.|.|-+|+||+|||||++||+||+++|++||+|++++++.. .+. ...+++++...+.++.+..+.+++.+++|++
T Consensus 4 ~~~~~~~~~~vG~GPGd~~lLT~rA~~~L~~AdvI~g~d~~~~--~~~-~~~~~~~~~~~~~~ei~~~~~li~~~~~G~~ 80 (251)
T 3nut_A 4 HHHMSGWVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYVA--RIA-PREGLTLHPTDNRVELDRATHALEMAAEGRR 80 (251)
T ss_dssp ----CCEEEEEECBSSCGGGSCHHHHHHHHHCSEEEECGGGGT--TCC-CCTTCEEEECCSSCCHHHHHHHHHHHHTTCE
T ss_pred cccccccEEEEEECCCCHHHHHHHHHHHHHhCCEEEEcCcccc--ccc-ccCCCEEeecCCHHHHHHHHHHHHHHHCCCe
Confidence 3468899999999999999999999999999999999775431 121 1235555544433333334678888999999
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhh----CCCCEEEEccchHHHHHHHhCCCCC-ccEEEEEEecCC--CchhHHHHHHh
Q 023900 156 VALISDAGTPGISDPGTELAKLCVD----EKIPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPKH--ARSRTERLMLS 228 (275)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~----~gi~veVIPGISS~~aaaA~lGipl-~~~~~v~~l~~~--~~~~~~~l~~l 228 (275)
||+|+ +|||+|||++.++++.+.+ .|++++|||||||+++|+|++|+|| +++.++++.+.. +.+..+.++.+
T Consensus 81 Vv~L~-~GDP~i~g~g~~l~~~l~~~~~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~s~~~~~~~~~~~~~~l~~l 159 (251)
T 3nut_A 81 VVVVS-SGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDFCAINLSDNLKPFEILEKRLRHA 159 (251)
T ss_dssp EEEEE-SBCTTSSSHHHHHHHHHHHCGGGTTCCEEEECCCCHHHHHHHHHEETTSSSEEEEESCCTTSCHHHHHHHHHHH
T ss_pred EEEEe-CCCcccccCHHHHHHHHHhhcccCCCcEEEECCHHHHHHHHHHhCCCccCCeEEEEecCCCCChHHHHHHHHHH
Confidence 99995 9999999999999999997 7999999999999999999999999 688888654431 22223445666
Q ss_pred hcCCCeEEEEcCCc-----CHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 229 ANEVKTQIFYVPPH-----KLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 229 ~~~~~tlVl~~~~~-----~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
+..+.|+|||++.+ ++.++++.|.++++++++++|++++|+++|++
T Consensus 160 ~~~~~tlvl~~~~~~~~p~~i~~~~~ll~~g~~~~~~v~v~~~l~~~~E~i 210 (251)
T 3nut_A 160 ARGDFAMAFYNPRSKSRPHQFTRVLEILREECEPGRLILFARAVTTPEQAI 210 (251)
T ss_dssp HHTTCEEEEESCSCSSSTTHHHHHHHHHHHHSCTTCEEEEEESTTSTTCEE
T ss_pred hCCCCEEEEECCccccchhHHHHHHHHHHhCCCCCCEEEEEeeCCCCCcEE
Confidence 67778999999753 57777777766788899999999999999986
No 9
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=100.00 E-value=1.2e-37 Score=276.35 Aligned_cols=183 Identities=26% Similarity=0.320 Sum_probs=152.8
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEec------CCCCHHHHHHHHHHHhhC
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLKQ 152 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~------~~~~~~e~~~~i~~~l~~ 152 (275)
|+|+||+||+|||||++||+||+++|++||+|++ ++++++++++.+ +++++.. +..++++..+.+.+.+++
T Consensus 1 M~g~l~vVG~GpG~~~~LT~~A~~~L~~advv~~-~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 77 (235)
T 1ve2_A 1 MRGKVYLVGAGFGGPEHLTLKALRVLEVAEVVLH-DRLVHPGVLALA--KGELVPVGKEGYGGKTPQEAITARLIALARE 77 (235)
T ss_dssp CCCEEEEEECBSSSGGGSBHHHHHHHHHCSEEEE-CTTSCHHHHTTC--CSEEEEC-------CCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeeCCCCHHHHHHHHHHHHHhCCEEEE-eCCCCHHHHHhh--CcEEEEecccCcccccCHHHHHHHHHHHHHc
Confidence 5689999999999999999999999999999999 567888888866 4555532 233567788889999999
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------ccEEEEEEecCCCchhHHHHH
Q 023900 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSRTERLM 226 (275)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl------~~~~~v~~l~~~~~~~~~~l~ 226 (275)
|++|+++ ++|||++||++.++++.+.+.|+++++||||||+++|+|++|+|| +++.++ +.|+ .. +
T Consensus 78 g~~V~~l-~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~~~---s~~~-~~-~--- 148 (235)
T 1ve2_A 78 GRVVARL-KGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALSALGLPLTHRGLARSFAVA---TGHD-PA-L--- 148 (235)
T ss_dssp TCEEEEE-ESBCTTSSTTHHHHHHHHHHHTCCEEEECCCCTTHHHHHHTTCCSCBTTTBSCEEEE---ESSC-TT-S---
T ss_pred CCeEEEE-cCCCCCcccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHcCCCcccCCcccEEEEe---CCCC-ch-h---
Confidence 9999999 799999999999999999988999999999999999999999999 577776 5554 21 1
Q ss_pred HhhcCCCeEEEEcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 227 LSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 227 ~l~~~~~tlVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
.+. ...|+|+|++++++.++++.|.++++++++++|++++|+++|++
T Consensus 149 ~l~-~~~t~vl~~~~~~~~~i~~~L~~g~~~~~~v~v~~~l~~~~E~i 195 (235)
T 1ve2_A 149 PLP-RADTLVLLMPLHTLGGLKERLLERFPPETPLALLARVGWPGEAV 195 (235)
T ss_dssp CCC-BCSEEEEEC------CHHHHHHTTSCTTSEEEEEESTTSTTCEE
T ss_pred hhc-cCCeEEEEcChhhHHHHHHHHHhcCCCCCeEEEEEECCcCCeEE
Confidence 444 67899999999999999999988777789999999999999986
No 10
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2.8e-36 Score=266.20 Aligned_cols=187 Identities=20% Similarity=0.214 Sum_probs=154.1
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCC-----CHHHHhh-ccC---CCcEEe--cCCCC--------H
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQY-YNI---KTPLLS--YHKFN--------E 139 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~-----~~~lL~~-~~~---~~~~i~--~~~~~--------~ 139 (275)
|+|+||+||+|||||++||+||+++|++||+|++++++. ..++++. +.. +++++. +++.. +
T Consensus 1 M~g~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (232)
T 2qbu_A 1 MHGKLIGVGVGPGDSELLTLRAVNVLRSVPVICAPRSSSERESIALSIVEDILTERRDGCRILDPVFPMTDDRDELESHW 80 (232)
T ss_dssp CCCCEEEEECBSSCGGGSBHHHHHHHHHCSEEECCBCTTCSSCHHHHHHHHHHHHCSSCCEEECCBCCSCSSSTTHHHHH
T ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhCCEEEEeCCCCCccchHHHHHHHHhccccCCcEEEEecCCCCccHHHHHHHH
Confidence 678999999999999999999999999999999987543 2344543 222 455553 22221 3
Q ss_pred HHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc----cEEEEEEec
Q 023900 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD----EFTFVGFLP 215 (275)
Q Consensus 140 ~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~----~~~~v~~l~ 215 (275)
++..+.+.+.+++|++||+++ +|||++||++.++++.+.+.|++++++|||||+++|+|++|+|++ .|.++ +
T Consensus 81 ~~~~~~i~~~~~~g~~V~~l~-~GDP~i~~~~~~l~~~~~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~---~ 156 (232)
T 2qbu_A 81 DSAARMVAAELEDGRDVAFIT-LGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAATAGRTLVEGDEILLVV---P 156 (232)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE-SBCTTBSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCCBCTTCCEEEE---S
T ss_pred HHHHHHHHHHHHCCCeEEEEe-CCCCccchhHHHHHHHHHHCCCcEEEeCCccHHHHHHHHhCCCCCCCCceEEEE---e
Confidence 567788888899999999995 899999999999999999999999999999999999999999984 45544 5
Q ss_pred CCCchhHHHHHHhhcCCCeEEEEcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 216 ~~~~~~~~~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
.+. ..|...+....|+|+|++++++.++++.|.+ ++.+++++|++++|+++|++
T Consensus 157 ~~~----~~l~~~~~~~~t~vl~~~~~~~~~i~~~L~~-~g~~~~v~v~~~l~~~~E~i 210 (232)
T 2qbu_A 157 RVD----DRFERVLRDVDACVIMKTSRHGRRAMEVVES-DPRGKDVVSVANCSMDDEVV 210 (232)
T ss_dssp SCC----HHHHHHGGGCSEEEESSHHHHHHHHHHHHHH-SSSCCEEEEEESTTSTTCEE
T ss_pred CCH----HHHHHHhhcCCeEEEEcccCcHHHHHHHHHh-cCCCCcEEEEEECCCCCcEE
Confidence 543 1677766667899999999999999999988 45568999999999999986
No 11
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=100.00 E-value=9.8e-36 Score=288.03 Aligned_cols=191 Identities=18% Similarity=0.229 Sum_probs=165.4
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecC------CCCHHHHHHHHHHHhhC
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH------KFNESQREQTVLNRLKQ 152 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~------~~~~~e~~~~i~~~l~~ 152 (275)
.+|+||+||+|||||++||++|+++|++||+|+| ++++++++++.+..+++.+..+ ..++++..+.+.+.+++
T Consensus 214 ~~g~l~lVG~GpGd~~lLTlrA~~~L~~ADvV~~-d~~~~~~il~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~~~ 292 (457)
T 1pjq_A 214 HRGEVVLVGAGPGDAGLLTLKGLQQIQQADIVVY-DRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQK 292 (457)
T ss_dssp CCCEEEEEECBSSCGGGSBHHHHHHHHHCSEEEE-CTTSCHHHHTTSCTTSEEEECSCC---CCCTTHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCChHHccHHHHHHHHhCCEEEE-eCCCCHHHHhhcccCCEEEeccccccccCCCHHHHHHHHHHHHHC
Confidence 4589999999999999999999999999999999 5678889999887776665432 33567888899999999
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------ccEEEEEEecCCCchh-HHHH
Q 023900 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSR-TERL 225 (275)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl------~~~~~v~~l~~~~~~~-~~~l 225 (275)
|++|++| ++|||++||++.++++.+.+.|++++|||||||+++|+|++|+|| +++.|+ +.|+... ...|
T Consensus 293 G~~Vv~L-~~GDP~i~g~g~~l~~~l~~~gi~v~vvPGiSs~~aa~a~~Giplt~~~~~~~~~~v---sg~~~~~~~~~~ 368 (457)
T 1pjq_A 293 GKRVVRL-KGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLV---TGHLKTGGELDW 368 (457)
T ss_dssp TCEEEEE-ESBCTTTSSSHHHHHTTTTTTTCCEEEECCCCHHHHHHHHTTCCSCCTTTCSEEEEE---CC------CCCH
T ss_pred CCcEEEE-eCCCCCccCCHHHHHHHHHHCCCCEEEeCCHhHHHHHHHHcCCCccCCCccceEEEE---eCCCCCcchhhH
Confidence 9999999 799999999999999999999999999999999999999999999 466766 6665321 1237
Q ss_pred HHhhcCCCeEEEEcCCcCHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 226 MLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 226 ~~l~~~~~tlVl~~~~~~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
+.+.....|+|+|++.+++.++++.|.+. ++++++++|++++|+++|++
T Consensus 369 ~~l~~~~~t~Vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i 418 (457)
T 1pjq_A 369 ENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRV 418 (457)
T ss_dssp HHHHSSSEEEEESSCSSSHHHHHHHHHHTTCCTTCEEEEEESTTSTTCEE
T ss_pred HHHhcCCCeEEEEcchhhHHHHHHHHHhcCCCCCCEEEEEEECCCCCcEE
Confidence 77888889999999999999999999986 88899999999999999986
No 12
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=100.00 E-value=6.2e-36 Score=265.87 Aligned_cols=182 Identities=20% Similarity=0.242 Sum_probs=155.7
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecC-----CCCHHHHHHHHHHHhhCCCe
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH-----KFNESQREQTVLNRLKQGEI 155 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~-----~~~~~e~~~~i~~~l~~G~~ 155 (275)
|+||+||+|||||++||+||+++|++||+|++ ++++++++++.+. ++.+.++ ..++++..+.+.+.+++|++
T Consensus 1 G~l~iVG~GpG~~~~LT~~A~~~L~~advI~~-~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~g~~ 77 (239)
T 1va0_A 1 GRVYLVGAGPGDPELLTLKAYRLLKEAPVVLY-DRLVDERVLALAP--GEKVYVGKEEGESEKQEEIHRLLLRHARAHPF 77 (239)
T ss_dssp CEEEEEECBSSCGGGSBHHHHHHHHHCSEEEE-CTTSCHHHHTTCC--SEEEECCCCC----CHHHHHHHHHHHHHTSSE
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCEEEE-cCCCCHHHHhhcc--ccEEecccccccccCHHHHHHHHHHHHHCCCc
Confidence 68999999999999999999999999999999 5678888898775 4555433 34567788889999999999
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------ccEEEEEEecCCCchh-HHHHHHh
Q 023900 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSR-TERLMLS 228 (275)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl------~~~~~v~~l~~~~~~~-~~~l~~l 228 (275)
|+++ ++|||++||++.++++.+.+.|++++++|||||+++| |+|| +++.|+ +.|++.. ...|+.+
T Consensus 78 V~~l-~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa----g~pl~~~~~~~~~~~~---~~~~~~~~~~~~~~l 149 (239)
T 1va0_A 78 VVRL-KGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLAS----GLPLTHRGLAHGFAAV---SGVLEGGGYPDLRPF 149 (239)
T ss_dssp EEEE-ESBCTTSSSSHHHHHHHHHHTTCCEEEECCCCGGGTT----CCCSSBTTTBSEEEEE---ESSCGGGCCCCCTTT
T ss_pred EEEE-eCCCCccccCHHHHHHHHHHCCCcEEEECCcchHhhc----CCCcccCCccceEEEE---eccCCccchhhHHHh
Confidence 9999 7999999999999999999999999999999999999 9999 567777 4454311 1245666
Q ss_pred hcCCCeEEEEcCCcCHHHHHHHHHhh-cCCCcEEEeEeccCCcCccc
Q 023900 229 ANEVKTQIFYVPPHKLLQFLEETSLL-FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 229 ~~~~~tlVl~~~~~~~~~i~~~L~e~-~~~~~~v~V~e~Lt~~~E~i 274 (275)
... .|+|+|++++++.++++.|.+. +++++++++++++|+++|++
T Consensus 150 ~~~-~t~vl~~~~~~~~~i~~~L~~~g~~~~~~v~v~~~l~~~~E~i 195 (239)
T 1va0_A 150 ARV-PTLVVLMGVGRRVWIAKELLRLGRDPREPTLFVERASTPKERR 195 (239)
T ss_dssp TTC-SSEEEESCSTTHHHHHHHHHHTTCCTTCEEEEEETTTSTTCEE
T ss_pred cCC-CcEEEEccHHHHHHHHHHHHhcCCCCCCcEEEEEECCCCCcEE
Confidence 666 8999999999999999999986 88889999999999999986
No 13
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=100.00 E-value=3.6e-35 Score=263.98 Aligned_cols=187 Identities=17% Similarity=0.138 Sum_probs=150.3
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCC----CHHHHhh-c----cCCCcEEe----cCCCC------H
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH----SGKLLQY-Y----NIKTPLLS----YHKFN------E 139 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~----~~~lL~~-~----~~~~~~i~----~~~~~------~ 139 (275)
|+|+||+||+|||||++||+||+++|++||+|+|++.+. ..++++. + ..+++++. +...+ +
T Consensus 3 ~~g~l~iVG~GpG~~~~LT~~A~~~L~~advV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
T 2e0n_A 3 NQGSIISVSLGPGDPGLITVKALSQLREADVIYYPGTVSASGAVTSVALDILKEFDLDPSKLRGMLVPMSRSRGAAEASY 82 (259)
T ss_dssp --CEEEEEECBSSCGGGSBHHHHHHHHHCSEEEEEEEECTTCCEECHHHHHHTTTTCCGGGEEEEEEECC---------C
T ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHHhCCEEEEeccccccccHHHHHHHHHHhcCCCCCEEEeeccCCccchhhhHHHH
Confidence 569999999999999999999999999999999985432 1134433 2 23445542 22211 2
Q ss_pred HHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc----cEEEEEEec
Q 023900 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD----EFTFVGFLP 215 (275)
Q Consensus 140 ~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~----~~~~v~~l~ 215 (275)
++..+.|.+.+++|++||+++ +|||++||++.++++.+.+.|++++|||||||+++|+|++|+||+ .+.++ +
T Consensus 83 ~~~~~~i~~~~~~g~~Va~l~-~GDP~~~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~G~pl~~~~~~~~~~---~ 158 (259)
T 2e0n_A 83 AANYASMAEEVQAGRRVAVVS-VGDGGFYSTASAIIERARRDGLDCSMTPGIPAFIAAGSAAGMPLALQSDSVLVL---A 158 (259)
T ss_dssp GGGHHHHHHHHHTTCEEEEEE-SBCTTBSCTHHHHHHHHHTTTCCEEEECCCCHHHHHHHHTTCCSBCTTCCEEEE---C
T ss_pred HHHHHHHHHHHHCCCeEEEEe-CCCCcccccHHHHHHHHHHCCCCEEEeCChhHHHHHHHhcCCCCcCCCceEEEE---c
Confidence 567888999999999999995 999999999999999999999999999999999999999999994 45554 6
Q ss_pred CCCchhHHHHHHhhcCCCeEEEEcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 216 ~~~~~~~~~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
.+.. .+.+...++...|+|||++++++.++++.|.+. +. +++|++++|+++|++
T Consensus 159 ~~~~--~~~l~~~~~~~~t~vl~~~~~~~~~i~~~L~~~-g~--~v~v~~~l~~~~E~i 212 (259)
T 2e0n_A 159 QIDE--IGELERALVTHSTVVVMKLSTVRDELVSFLERY-AK--PFLYAEKVGMAGEFI 212 (259)
T ss_dssp SCSS--THHHHHHHTTCSEEEECCTTSSGGGHHHHHHHH-CS--CEEEEESTTSTTCEE
T ss_pred CCCC--HHHHHHHhhcCCEEEEEcccccHHHHHHHHHhC-CC--CEEEEEECCCCCeEE
Confidence 5542 356777777788999999999999999999885 32 299999999999987
No 14
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A*
Probab=100.00 E-value=2.7e-35 Score=270.48 Aligned_cols=191 Identities=23% Similarity=0.245 Sum_probs=156.2
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhc--cCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEE
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYY--NIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~--~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~ 158 (275)
|+||+||+|||||++||++|+++|++||+|++++++. +++..+ ..+++++.+++.++.+..+.+++.+++|++||+
T Consensus 2 G~l~lVG~GpGdp~lLT~rA~~~L~~ADvVig~~~~l--~ll~~~~~~~~k~~~~~~~~~e~~~~~~~l~~a~~G~~Va~ 79 (295)
T 2zvb_A 2 GELFLVGMGPGDLPGLTQRAREALEGAEVVIGYSTYV--KLLEEMGLLAGKEVVRKGMTEELDRAEEALERALSGQRVAL 79 (295)
T ss_dssp CEEEEEECBTSSGGGSCHHHHHHHHHCSEEECCHHHH--HHHHHHTCCTTSEEECTTCCSHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEECCCCChHHHHHHHHHHHHcCCEEEEeCcHH--HHHHHhhccCCCEEEecCCchHHHHHHHHHHHHHCCCcEEE
Confidence 8999999999999999999999999999999876432 556554 345677777766666777888888899999999
Q ss_pred EccCCCCCCCchHHHHHHHhhhCC--------------------CCEEEEccchHHHHHHHhCCCCC-ccEEEEEEecC-
Q 023900 159 ISDAGTPGISDPGTELAKLCVDEK--------------------IPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPK- 216 (275)
Q Consensus 159 LS~~GDP~iys~~~~l~~~l~~~g--------------------i~veVIPGISS~~aaaA~lGipl-~~~~~v~~l~~- 216 (275)
|+ +|||++|+++.++.+.+.+.+ ++++|||||||+++|+|++|+|| +++.++++...
T Consensus 80 L~-~GDP~~yg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~veVIPGiSS~~aaaA~lG~plt~~~~~is~~~~~ 158 (295)
T 2zvb_A 80 VS-GGDPGIYGMAAPVLELMEERGLKRVDGGVGLPGRFAGEEGEVFLAVIPGVTAANAVASLLGSPLAHDTCLISLSDLL 158 (295)
T ss_dssp EE-SBCTTSSSSHHHHHHHHHHTTCEECSCCCSSSEEEEETTEEEEEEEECCCCHHHHHHHTTEETTSSCEEEEECCCTT
T ss_pred Ee-CCCCChhhhHHHHHHHHHHhcccccccccccccccccccCCCcEEEECCHhHHHHHHHHhCCCccCCCeEEeCCCCC
Confidence 95 999999999999999887754 89999999999999999999999 68888853211
Q ss_pred -CCchhHHHHHHhhcCCCeEEEEcCC-----cCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 217 -HARSRTERLMLSANEVKTQIFYVPP-----HKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 217 -~~~~~~~~l~~l~~~~~tlVl~~~~-----~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
++......++.+.....++|+|++. +++.++++.|.+.++++++++|++++|+++|++
T Consensus 159 ~~~~~l~~~l~~~~~~~~t~vl~~~~~~~r~~~~~~i~~~L~~~~~~~~~v~vv~~l~~~~E~i 222 (295)
T 2zvb_A 159 TPWPLIERRLHAAGQGDFVVVLYNPQSKRRDWQLRKSAEILLEYRPKETPAALVKSAYRKRQEV 222 (295)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESCCCSSCTTHHHHHHHHHTTTSCTTCEEEEEESTTSTTCEE
T ss_pred CCHHHHHHHHHHhhcCCcEEEEEcCCcccchhhHHHHHHHHHhcCCCCCEEEEEecCCCCCcEE
Confidence 2222223455556667899999963 378899999988777799999999999999986
No 15
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.1e-35 Score=270.63 Aligned_cols=189 Identities=15% Similarity=0.104 Sum_probs=142.1
Q ss_pred CCCCCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC--------HHHHhhcc-C-CCcEEecCC--CC----
Q 023900 75 KRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYN-I-KTPLLSYHK--FN---- 138 (275)
Q Consensus 75 ~~~~~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~--------~~lL~~~~-~-~~~~i~~~~--~~---- 138 (275)
+...|+|+||+||+||||||+||+||+++|++||+|++++++.. .++++.+. . +++++.+++ .+
T Consensus 16 ~~~~m~g~ly~VG~GPGdpellTlrA~~~L~~aDvI~~~~t~~~~~~l~~~a~~il~~~~~~~~~~~i~~~~pm~~~~~~ 95 (275)
T 3nd1_A 16 PRGSHMIELSLIGIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDLAGLRRQICAAHLTNPATKVIDFALPVRDASNP 95 (275)
T ss_dssp ----CCEEEEEEECBSSCGGGCBHHHHHHHHHCSEEEEECCCSCGGGCHHHHHHHHHHHCCCTTCEEEEECCCCC-----
T ss_pred cCCCCCcEEEEEEeCCCCHHHHHHHHHHHHHhCCEEEecCCcccchhhhhhHHHHHHHhhcccCcEEEEecCCccccccc
Confidence 45568899999999999999999999999999999999876554 57787653 3 266665432 11
Q ss_pred -------------HHHHHHHHHHHhhC-CCeEEEEccCCCCCCCchHHHHHHHhhh-CCCCEEEEccchHHHHHHHhCCC
Q 023900 139 -------------ESQREQTVLNRLKQ-GEIVALISDAGTPGISDPGTELAKLCVD-EKIPVVPIPGASAFVAALSASGL 203 (275)
Q Consensus 139 -------------~~e~~~~i~~~l~~-G~~Vv~LS~~GDP~iys~~~~l~~~l~~-~gi~veVIPGISS~~aaaA~lGi 203 (275)
+++..+.|++.+++ |++||+++ +|||+|||++.++++.+.+ .|++++|||||||+++|+|++|+
T Consensus 96 ~Y~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Va~l~-~GDP~i~~~~~~l~~~l~~~~gi~veviPGiSs~~aa~a~~g~ 174 (275)
T 3nd1_A 96 SYRKGVDDWHDAIAETWLSEITAHVPGLEGRVALLV-WGDPSLYDSTLRIAERLKSRLPLTTKVIPGITAIQALCAAHAI 174 (275)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCTTSCEEEEEEE-SBCTTSSCSHHHHHHTTTTTSSEEEEEECCCCHHHHHHHHHTC
T ss_pred hhhhhhhhhhHhHHHHHHHHHHHHHHhCCCeEEEEe-CCCCcccchHHHHHHHHHHhcCCCEEEecCccHHHHHHHHcCC
Confidence 12234557888899 99999995 9999999999999999988 79999999999999999999999
Q ss_pred CCccE-EEEEEecCCCchhHHHHHHhhcCCCeEEEEcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 204 ATDEF-TFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 204 pl~~~-~~v~~l~~~~~~~~~~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
||+++ .++++++.+. ...+..+...+.++|+|++.+++.++ .+++++++|++++|+++|++
T Consensus 175 pl~~~~~~~~~l~g~~---~~~~~~~~~~~~~vvl~~~~~~l~~i-------~~~~~~v~v~~~l~~~~E~i 236 (275)
T 3nd1_A 175 PLNDIGAPVVITTGRQ---LRDHGWPAGTETVVAMLDGECSFQSL-------PPDGLTIFWGACVAMPEEVL 236 (275)
T ss_dssp CSSCTTCCEEEEEHHH---HHHHCSCTTCSEEEEESCSSCGGGGS-------CCTTEEEEEEESTTSTTCEE
T ss_pred CCccCCcEEEEEcCCC---cchHHHHhCCCCEEEEECCcccHHHH-------hCCCCEEEehhccCCCCcEE
Confidence 99865 2344455432 11122222333455667666665442 23579999999999999987
No 16
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=100.00 E-value=1e-33 Score=256.14 Aligned_cols=193 Identities=15% Similarity=0.130 Sum_probs=139.9
Q ss_pred CCCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCC-----CHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhh
Q 023900 77 GPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLK 151 (275)
Q Consensus 77 ~~~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~-----~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~ 151 (275)
+..+|+||+||+|||||++||+||+++|++||+|++++ +. ..+.++.+. +++.........++..+.+++.++
T Consensus 9 ~~~~g~l~vVG~GpGd~~lLTlrA~~~L~~ADvI~~~~-~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~a~ 86 (268)
T 1vhv_A 9 GGHMSLLTFVGLGLWDVKDISVKGLEAVREADEVYVEY-YTSKLLSSIEEMEEFF-GKRVVELERSDLEENSFRLIERAK 86 (268)
T ss_dssp ----CEEEEEECBSSSGGGSBHHHHHHHHHCSEEEEEC-SSCCCSSCHHHHHHHH-TSCCEEECHHHHTTTHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCEEEECC-chHhhhccHHHHHHHh-CCCccccchhHHHHHHHHHHHHhC
Confidence 44568999999999999999999999999999999965 33 223333332 222221111113456677888777
Q ss_pred CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEec--CCCchhHHHHHHhh
Q 023900 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLP--KHARSRTERLMLSA 229 (275)
Q Consensus 152 ~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~--~~~~~~~~~l~~l~ 229 (275)
+ ++||+++ +|||++||++.++++++.+.|++++|||||||+++|+|++|+||+++.+...++ .+........+.+.
T Consensus 87 ~-~~Va~L~-~GDP~iy~~~~~l~~~~~~~gi~vevIPGiSs~~aa~a~~G~pl~~~~~~~sv~~~~~~~~~~~~~~~l~ 164 (268)
T 1vhv_A 87 S-KSVVLLV-PGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVCGLTGLHNYRFGKSATVSWHRSQTPVNVIKANRS 164 (268)
T ss_dssp T-SEEEEEE-SBCTTSSSHHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHCCCGGGBCCCEEECSSCCSHHHHHHHHHHH
T ss_pred C-CCEEEEe-CCCCcccCcHHHHHHHHHHCCCcEEEECCccHHHHHHHHcCCCcccCcceEEEEecCCCchHHHHHHHhc
Confidence 5 8999995 999999999999999999899999999999999999999999999753321111 12211112223455
Q ss_pred cCCCeEEE------EcCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 230 NEVKTQIF------YVPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 230 ~~~~tlVl------~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
....|+|+ |+.++++.+.+..+.+.++ +++++|++++|+++|++
T Consensus 165 ~~~~tlvl~d~~~~~~~~~~~~~~L~~l~~~~~-~~~v~v~~~l~~~~E~i 214 (268)
T 1vhv_A 165 IDAHTLLFLDLHPEPMTIGHAVENLIAEDAQMK-DLYAVGIARAGSGEEVV 214 (268)
T ss_dssp TTCBEEEEECCSSSCCCHHHHHHHHHHHCGGGG-GSEEEEEESTTSSSCEE
T ss_pred cCCCeEEEEcCchhhcCHHHHHHHHHHHHhcCC-CcEEEEEEcCCCCceEE
Confidence 66789999 6776666665555555677 89999999999999986
No 17
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=100.00 E-value=1.6e-33 Score=253.98 Aligned_cols=189 Identities=16% Similarity=0.190 Sum_probs=145.6
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCC---C--CHHHHhhccCCCcEEecCCCCHHHHHHHHH-HHhhCCCe
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTR---H--SGKLLQYYNIKTPLLSYHKFNESQREQTVL-NRLKQGEI 155 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~---~--~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~-~~l~~G~~ 155 (275)
+||+||+|||||++||+||+++|++||+|++++.. . +.++++.+. +++++..+..++++..+.+. +.++ |++
T Consensus 2 ~l~iVG~GpG~~~~LT~~A~~~L~~advv~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~-g~~ 79 (265)
T 2z6r_A 2 VLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQRLI-GKEIRVLSREDVELNFENIVLPLAK-END 79 (265)
T ss_dssp CEEEEECBSSSGGGSBHHHHHHHHHCSEEEEECSSCCCTTCCHHHHHHHH-TSCCEEECHHHHHHHHHHHTHHHHT-TSC
T ss_pred EEEEEccCCCChHhcCHHHHHHHHhCCEEEEeccccccccCCHHHHHhcc-CCcEEEcCcccHHHHHHHHHHHHhC-CCc
Confidence 69999999999999999999999999999986432 1 567787663 55655544334566677787 7776 799
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccE---EEEEEecCCCch--hHHHHHHhhc
Q 023900 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARS--RTERLMLSAN 230 (275)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~---~~v~~l~~~~~~--~~~~l~~l~~ 230 (275)
||+|+ +|||++||++.++++.+.+.|++++|||||||+++| |++|+||+++ ..+.+.+.|+.. ..+.+...++
T Consensus 80 V~~l~-~GDP~i~~~~~~l~~~l~~~gi~veviPGiSs~~aa-a~~g~pl~~~~~~~~v~~~s~~~~~~~~~~~l~~~~~ 157 (265)
T 2z6r_A 80 VAFLT-PGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAV-GITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAE 157 (265)
T ss_dssp EEEEE-SBCTTSSSSTHHHHHHHHHTTCCEEEECCCCHHHHG-GGGTCCGGGBCCCEEECCCBTTBCCCHHHHHHHHHHH
T ss_pred EEEEE-CCCCcCCCCHHHHHHHHHHCCCcEEEECChhHHHHH-HHhCCCccCCCccEEEEEecCCcCCCchHHHHHHHHh
Confidence 99995 999999999999999999999999999999999999 9999999864 122122445432 1245666665
Q ss_pred CC-CeEEE---------EcCCc----CHHHHHHHHHh-hcCCCcEEEeEeccCCcCccc
Q 023900 231 EV-KTQIF---------YVPPH----KLLQFLEETSL-LFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 231 ~~-~tlVl---------~~~~~----~~~~i~~~L~e-~~~~~~~v~V~e~Lt~~~E~i 274 (275)
.+ .|+|+ |++.+ ++.++++.+.. +++++++++|++++|+++|++
T Consensus 158 ~~~~tlvl~d~~~~~~~y~~~~~~~~~l~~~~~~l~~~~~~~~~~v~v~~~l~~~~E~i 216 (265)
T 2z6r_A 158 RGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTI 216 (265)
T ss_dssp TTCBEEEEECEEGGGTEECCHHHHHHHHHHHHHHHCCSSSCTTCEEEEEESTTSSSCEE
T ss_pred CCCceEEEEecccccccccCHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeCCCCceEE
Confidence 55 89999 78876 33444444432 366799999999999999986
No 18
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica}
Probab=100.00 E-value=3.3e-34 Score=262.85 Aligned_cols=191 Identities=21% Similarity=0.265 Sum_probs=149.1
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCC----CCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCe
Q 023900 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTR----HSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (275)
Q Consensus 80 ~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~----~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~ 155 (275)
.|+||+||+|||||++||+||+++|++||+|++++.+ .+.++|+.+ .+++++.+++.++++..+.+++.+++ ++
T Consensus 20 ~~~l~lVG~GpGd~~~LT~rA~~~L~~ADvV~~e~~~s~~~~~~~~L~~~-~~~~~i~~~~~~~~~~~~~i~~~a~~-~~ 97 (292)
T 3i4t_A 20 GSMLYIIGLGLYDEKDITVRGLEAVKSCDLVFLEHYTAILQCDVAKLEEF-YGKKVIIGDRDLVETEADQILEPAKT-KN 97 (292)
T ss_dssp CCEEEEEECBSSSGGGSCHHHHHHHHHCSEEEECGGGGGSSSCHHHHHHH-HTSCCEEC-------CCCTTHHHHTT-SE
T ss_pred CCEEEEEEECCCChHHhhHHHHHHHHhCCEEEEecccccccCCHHHHHhC-CCCeEEEcccccHHHHHHHHHHHhcC-CC
Confidence 4799999999999999999999999999999996543 567888877 45666666655556666778888887 99
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccE---EEEEEecCCCch---hHHHHHHhh
Q 023900 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARS---RTERLMLSA 229 (275)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~---~~v~~l~~~~~~---~~~~l~~l~ 229 (275)
||+++ +|||++||++.++++++.+.|+++++||||||++ |+|++|+||+.+ .-+.+++.|+.. ....|+.+.
T Consensus 98 Vv~L~-~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~-A~a~~G~pl~~~~~~~sv~~~t~~~~p~~~~~~~~~~l~ 175 (292)
T 3i4t_A 98 VALLV-VGDVYGATTHSDIFVRCQKMGIEVKVIHNASIMN-AIGCSGLQLYRFGQTVSVCFWSEHWRPSSYYPKIKINRD 175 (292)
T ss_dssp EEEEE-SBCHHHHCTTHHHHHHHHHHTCCEEEECCCCHHH-HGGGGSCCGGGBCCCEEECCCBTTBCCCTHHHHHHHHHH
T ss_pred EEEEe-cCCCCccccHHHHHHHHHHCCCcEEEECCHHHHH-HHHHhCCCcccCCceeEEEEEeCCCCCCccHHHHHHHhh
Confidence 99995 9999999999999999999999999999999998 569999999854 111223455432 234577888
Q ss_pred cCCCeEEE------------------------EcCCcC-HHHHHH---HHHh-hcCCCcEEEeEeccCCcCccc
Q 023900 230 NEVKTQIF------------------------YVPPHK-LLQFLE---ETSL-LFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 230 ~~~~tlVl------------------------~~~~~~-~~~i~~---~L~e-~~~~~~~v~V~e~Lt~~~E~i 274 (275)
....|+|+ |+++++ ...+.+ .|.+ +++++++++|++++|+++|++
T Consensus 176 ~~~~Tlvl~d~~~~e~~~~~~~~~~~~y~p~r~m~~~~~~~~L~~~~~~l~~~g~~~dtpv~vv~~~t~~~E~i 249 (292)
T 3i4t_A 176 NNMHTLVLLDIKVKERSEESIIKGRDIFEPPRYMTINQCIEQLLEVEKEQHLGVYDEDTMVVGMARVACADQKI 249 (292)
T ss_dssp TTCBEEEEECEECCC-------------CCCEECCHHHHHHHHHHHHHHHCCCSCCTTCEEEEEESTTSTTCEE
T ss_pred cCCCeEEEEeccccccchhhccccccccCCccccCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeecCCCceEE
Confidence 88899999 777777 444444 4444 478899999999999999986
No 19
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=100.00 E-value=4.6e-33 Score=249.31 Aligned_cols=180 Identities=16% Similarity=0.194 Sum_probs=134.5
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCC--------HHHHhhccCCCcEEecCC--C-------------
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYNIKTPLLSYHK--F------------- 137 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~--------~~lL~~~~~~~~~i~~~~--~------------- 137 (275)
|+||+||+|||||++||+||+++|++||+|++++++.. +++++.+..+++++.++. .
T Consensus 3 g~l~vVG~GpGd~~lLTl~A~~~L~~Advv~~~~~~~~~~~l~~~~~~il~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 82 (251)
T 2npn_A 3 RTIYVIGIGTGSPEFLTLQAISGLRHAQAIVALDKGEQKSDLLALRQKIVDTHAPGTPIYAVTDPERDRNPDNYEEEVRR 82 (251)
T ss_dssp EEEEEEECBSSCGGGCCHHHHHHHHHCSEEEEEC---CCHHHHHHHHHHHHHHSTTCCEEEECC----------CHHHHH
T ss_pred cEEEEEEeCCCChhHhhHHHHHHHHhCCEEEEeCCCCCchhhhhhHHHHHHHHhCCCEEEEecCCCcccchhhhhhhhhh
Confidence 79999999999999999999999999999999865543 345665544666665542 0
Q ss_pred ---CHHHHH-HHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCC---CCEEEEccchHHHHHHHhCCCCCccEE-
Q 023900 138 ---NESQRE-QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEK---IPVVPIPGASAFVAALSASGLATDEFT- 209 (275)
Q Consensus 138 ---~~~e~~-~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~g---i~veVIPGISS~~aaaA~lGipl~~~~- 209 (275)
+.++.. +.|.+.+++|++||+|+ +|||++||++.++++.+.+.| ++++|||||||+++|+|++|+||+++.
T Consensus 83 ~~~~~~~~~~~~i~~~~~~g~~Vv~l~-~GDP~iy~~~~~l~~~l~~~g~~~i~veviPGiSs~~aa~a~~g~pl~~~~~ 161 (251)
T 2npn_A 83 WHAERAHLLASTIRERTPDDGAVAFLV-WGDPSLYDSTLRIIEHMRNLEDLHADVKVIPGITAVQVLTAEHGILINRIGE 161 (251)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCEEEEEE-SBCTTSSCCHHHHHHHHHHHHTCCEEEEEECCCCHHHHHHHHHTCCSSCTTC
T ss_pred hhhhHHHHHHHHHHHHHHCCCeEEEEe-CCCcccccCHHHHHHHHHhcCCCCCcEEEeCChhHHHHHHHHcCCCcCCCCC
Confidence 011122 35667777899999995 999999999999999998877 999999999999999999999998641
Q ss_pred EEEEecCCCchhHHHHH-HhhcCCCeEEEEcCCcC-HHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 210 FVGFLPKHARSRTERLM-LSANEVKTQIFYVPPHK-LLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 210 ~v~~l~~~~~~~~~~l~-~l~~~~~tlVl~~~~~~-~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
.+.+++.+. ++ .+....+++|+|..+++ +.++ . ++++++++++|+|+++|++
T Consensus 162 ~~~~~~g~~------l~~~l~~~~~t~vvl~~~~~~~~~l----~---~~~~~v~v~~~l~~~~E~i 215 (251)
T 2npn_A 162 AIHITTGRN------LPETSAKDRRNCVVMLDGKTAWQDV----A---TEHTYMWWGAFLGTEQQVL 215 (251)
T ss_dssp CCEEEETTT------GGGSCTTGGGEEEEESCSSCTHHHH----C---CTTEEEEEEESTTSTTCEE
T ss_pred eEEEEccch------hhHHHHhcCCcEEEEEcchhhHHHh----c---CCCCEEEEEEECCCCCeEE
Confidence 112234331 11 22234578887776665 4332 2 4589999999999999987
No 20
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=99.98 E-value=3.5e-32 Score=249.30 Aligned_cols=189 Identities=20% Similarity=0.154 Sum_probs=145.7
Q ss_pred eEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCC---CH---HHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCe
Q 023900 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH---SG---KLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (275)
Q Consensus 82 ~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~---~~---~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~ 155 (275)
+||+||+| |||++||++|+++|++||+|++++... +. .+++.+.. ++++..+..++++..+.+++.++ |++
T Consensus 9 ~l~lVG~G-Gd~~lLTl~A~~~L~~ADvV~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~i~~~~~-g~~ 85 (294)
T 1wde_A 9 TLLLVGWG-YAPGMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGE-ARVVEASRRDLEERSREIVSRAL-DAV 85 (294)
T ss_dssp EEEEEECB-SSTTCCCHHHHHHHHHCSEEEEECSSSTTCHHHHHHHHHHHTS-SSEEECCHHHHHTSHHHHTCCSS-CCE
T ss_pred EEEEEECC-CChHHhhHHHHHHHHhCCEEEEecccccccccchHHHHHhccC-CeEEecChHHHHHHHHHHHHHhC-CCC
Confidence 89999999 999999999999999999999975432 11 23444444 56665443334555667777777 999
Q ss_pred EEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEE-EEE--EecCCCc--hhHHHHHH-hh
Q 023900 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFT-FVG--FLPKHAR--SRTERLML-SA 229 (275)
Q Consensus 156 Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~-~v~--~l~~~~~--~~~~~l~~-l~ 229 (275)
||+|+ +|||++||++.++++.+.+.|++++|||||||+++|+|++|+||+++. .++ +...+.. ...+.+.. +.
T Consensus 86 Vv~L~-~GDP~v~g~~~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~v~~~~~~~~p~~~~~~l~~~l~ 164 (294)
T 1wde_A 86 VAVVT-AGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLC 164 (294)
T ss_dssp EEEEE-SBCTTSSSSHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHTCCGGGEEEEEEECCGGGCCCCHHHHHHHHHHHH
T ss_pred EEEEe-CCCCccccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHhCCCccCCCceEEEEeccCcccCCChHHHHHHHHh
Confidence 99995 999999999999999999999999999999999999999999999752 111 2111111 01234444 44
Q ss_pred cCCCeEEEEcCCcC-----HHHHHHHHH---hh----------cCCCcEEEeEeccCCcCccc
Q 023900 230 NEVKTQIFYVPPHK-----LLQFLEETS---LL----------FGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 230 ~~~~tlVl~~~~~~-----~~~i~~~L~---e~----------~~~~~~v~V~e~Lt~~~E~i 274 (275)
....|+|+|+..++ ..++++.|. +. ++++++++|++++|+++|++
T Consensus 165 ~~~~tlvl~~~~~~~~~m~~~~i~~~L~~l~~~l~~~~~~~G~~~~~~~v~v~~~lg~~~E~i 227 (294)
T 1wde_A 165 AGLHTTALLDVDERGVQLSPGQGVSLLLEADREYAREAGAPALLARLPSVLVEAGAGGGHRVL 227 (294)
T ss_dssp HTCEEEEEECBCTTSCBCCHHHHHHHHHHHHHHHHHHHTSCCCGGGSCEEEEECCGGGCCEEE
T ss_pred cCCCeEEEEecccccccccHHHHHHHHHHHHHhhhccccccCcCCCCCEEEEEEeCCCCCcEE
Confidence 44689999999888 888888887 53 45689999999999999986
No 21
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=99.97 E-value=2.8e-30 Score=227.62 Aligned_cols=175 Identities=19% Similarity=0.198 Sum_probs=123.8
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEE
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~ 158 (275)
-.|+||+||+||| |++||+||+++|++||+|++. ++. .++++.+. ..+...+... .++..+.+. .+++|++||+
T Consensus 20 ~~g~l~lVG~GpG-p~lLTlrA~~~L~~AdvI~~~-~~~-l~~~~~~~-~~~~~~~~~~-~~~~~~~i~-~~~~g~~Vv~ 93 (221)
T 2bb3_A 20 SGHMIWIVGSGTC-RGQTTERAKEIIERAEVIYGS-RRA-LELAGVVD-DSRARILRSF-KGDEIRRIM-EEGREREVAV 93 (221)
T ss_dssp CCSEEEEEECBSS-TTCCCHHHHHHHHHCSEEEEC-HHH-HHHTTCTT-CTTEEECSCC-SHHHHHHHH-HHHHHSCEEE
T ss_pred CCCEEEEEEeCCC-hhHhHHHHHHHHHhCCEEEEC-HHH-HHHhhhhc-CCceEeccch-HHHHHHHHH-HhcCCCcEEE
Confidence 3478999999999 999999999999999999994 322 23333221 1223223322 244556665 4667899999
Q ss_pred EccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEecCCCchhHHHHHHhhcCCCeEEEE
Q 023900 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFY 238 (275)
Q Consensus 159 LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~~~~~l~~l~~~~~tlVl~ 238 (275)
++ .|||++|+.+..+.+ + ..+++++|||||||+++|+|++|+||+++.+++ .|+++....++.+.....+++++
T Consensus 94 L~-~GDP~i~~~~~~l~~-~-~~~i~veviPGiSS~~aa~a~~g~pl~~~~~vs---~~~r~~~~~l~~l~~~~~~vvl~ 167 (221)
T 2bb3_A 94 IS-TGDPMVAGLGRVLRE-I-AEDVEIKIEPAISSVQVALARLKVDLSEVAVVD---CHAKDFDAELTELLKYRHLLILA 167 (221)
T ss_dssp EE-SBCTTTTTSHHHHHT-S-CCSSEEEEECCCCHHHHHHHHHTCCGGGEEEEE---C----CCHHHHTHHHHCEEEEEE
T ss_pred Ee-CCCCccccCHHHHHH-h-cCCCCEEEECCHHHHHHHHHHhCCCceeEEEEe---ecCCCchHHHHHHhcCCeEEEEE
Confidence 95 899999997776544 4 358999999999999999999999999998884 44332223566665555455555
Q ss_pred cCCcCHHHHHHHHHhhcCCCcEEEeEeccCCcCccc
Q 023900 239 VPPHKLLQFLEETSLLFGYSRRCVIAREITKMHEEH 274 (275)
Q Consensus 239 ~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt~~~E~i 274 (275)
...++..+ +.+ ++++|++++|+++|++
T Consensus 168 ~~~~~~~~----l~~-----~~v~v~~~lg~~~E~i 194 (221)
T 2bb3_A 168 DSHFPLER----LGK-----RRVVLLENLCMEGERI 194 (221)
T ss_dssp CTTCCCGG----GTT-----CEEEEEESTTSTTCEE
T ss_pred CCCCCHHH----HhC-----CeeehhhhcCCCCcEE
Confidence 55444422 211 8999999999999986
No 22
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=99.95 E-value=8.5e-28 Score=192.04 Aligned_cols=114 Identities=47% Similarity=0.798 Sum_probs=101.7
Q ss_pred CCCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCC-CcEEecCCCCHHHHHHHHHHHhhCCCeE
Q 023900 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIK-TPLLSYHKFNESQREQTVLNRLKQGEIV 156 (275)
Q Consensus 78 ~~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~-~~~i~~~~~~~~e~~~~i~~~l~~G~~V 156 (275)
.++|+||+||+|||||++||+||+++|++||+|+++++++++++++.+... ++++.+++.++++..+.+++.+++|++|
T Consensus 3 ~~~g~ly~VG~GpGd~~~lT~~a~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~V 82 (117)
T 3hh1_A 3 AHKGTLYVVATPLGNLDDMTFRAVNTLRNAGAIACEDTRRTSILLKHFGIEGKRLVSYHSFNEERAVRQVIELLEEGSDV 82 (117)
T ss_dssp CCCCCEEEEEECSSCGGGSCHHHHHHHHHCSEEEESCHHHHHHHHHHTTCCSCCEEECCSTTHHHHHHHHHHHHHTTCCE
T ss_pred CCCceEEEEeCCCCCHHHhhHHHHHHHHhCCEEEEecCchHHHHHHHhCCCCCEEeccCCccHHHHHHHHHHHHHCCCeE
Confidence 467999999999999999999999999999999998766667888887544 7788888888888899999999999999
Q ss_pred EEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccc
Q 023900 157 ALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (275)
Q Consensus 157 v~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGI 191 (275)
++++++|||++|+++.++++++.+.|++++++||+
T Consensus 83 ~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viPGp 117 (117)
T 3hh1_A 83 ALVTDAGTPAISDPGYTMASAAHAAGLPVVPVPGA 117 (117)
T ss_dssp EEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC--
T ss_pred EEEecCCcCeEeccHHHHHHHHHHCCCcEEEeCCC
Confidence 99965899999999999999999999999999995
No 23
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=99.63 E-value=1e-15 Score=121.77 Aligned_cols=85 Identities=44% Similarity=0.743 Sum_probs=79.0
Q ss_pred ccchHHHHHHHhCCCCCccEEEEEEecCCCchhHHHHHHhhcCCCeEEEEcCCcCHHHHHHHHHhhcCCCcEEEeEeccC
Q 023900 189 PGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAREIT 268 (275)
Q Consensus 189 PGISS~~aaaA~lGipl~~~~~v~~l~~~~~~~~~~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e~Lt 268 (275)
||+||+.+|.+.+|+|.+.|.|+||+|.+. .|.+.|+.+++.+.|+|||+++|++.++++.|.+.++++++++|++++|
T Consensus 1 PG~sA~~~Al~~sGlp~~~F~F~Gflp~~~-~r~~~l~~la~~~~TlVfyesp~Rl~~~l~~L~~~~g~~~~v~v~relT 79 (115)
T 3ffy_A 1 SNATAFVPALVASGLPNEKFCFEGFLPQKK-GRMTKLKSLVDEHRTMVFYESPHRLLKTLTQFAEYFGPERQVSVSREIS 79 (115)
T ss_dssp -CTTTHHHHHHHTTSCCSSEEEEESCCSST-THHHHHHHTTTCCSEEEEEECTTTHHHHHHHHHHHHCTTCEEEEEEESS
T ss_pred CchhHHHHHHHHcCCCCCcEEEEeeCCCCc-cHHHHHHHHhCCCCeEEEEechHHHHHHHHHHHHhcCCCCEEEeeeccC
Confidence 899999999999999999999999999766 4678899999999999999999999999999998888899999999999
Q ss_pred CcCccc
Q 023900 269 KMHEEH 274 (275)
Q Consensus 269 ~~~E~i 274 (275)
+++|++
T Consensus 80 k~~E~~ 85 (115)
T 3ffy_A 80 KIHEET 85 (115)
T ss_dssp SSCEEE
T ss_pred CCceEE
Confidence 999986
No 24
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=77.02 E-value=17 Score=29.01 Aligned_cols=91 Identities=10% Similarity=0.110 Sum_probs=47.1
Q ss_pred CeEEEEecCCCCc----cchHHHHHHHHhhCCEEEEcCCCCC----HHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhC
Q 023900 81 PGLYLVATPIGNL----EDITLRALRVLKSANVILSEDTRHS----GKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQ 152 (275)
Q Consensus 81 g~l~iVGvGPGdp----dlLTl~A~~~L~~ADvVi~~~~~~~----~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~ 152 (275)
+++++| .|||.- ..+-..-.++++.+|.|+..+.+.. .++.+.+. .+...+. +.++.++.+.+.++.
T Consensus 64 ~riivv-f~~g~~s~r~k~~~~~~~~~~~~aD~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~--d~~eai~~~~~~~~~ 138 (163)
T 3mvn_A 64 QRILAV-LEPRSNTMKMGVHKHELATSLQDADSVFIYQPPTIEWQVSEVLANLA--QPAISAD--DVDELVMRIVQQAKP 138 (163)
T ss_dssp SCEEEE-ECCC---------CHHHHHHHTTCSEEEEECC----CCHHHHHTTCC--SCEEEES--SHHHHHHHHHHHCCT
T ss_pred CcEEEE-ECCCCcchhhHHHHHHHHHHHhcCCEEEEECCCCcccCHHHHHhhCC--CCeEEEC--CHHHHHHHHHHhCCC
Confidence 466666 366531 1222233346778998877543210 12222222 2333232 456677778787777
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhh
Q 023900 153 GEIVALISDAGTPGISDPGTELAKLCV 179 (275)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~ 179 (275)
|..|.+. -+|+ ++..+..+++.+.
T Consensus 139 gDvVLv~-Gsg~--~~~~~~~l~~~l~ 162 (163)
T 3mvn_A 139 NDHILIM-SNGA--FGGIHQKLLTALA 162 (163)
T ss_dssp TCEEEEE-CSSC--GGGHHHHHHHHTC
T ss_pred CCEEEEE-CCCC--HHHHHHHHHHHHh
Confidence 7544444 2455 8888888877653
No 25
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=67.28 E-value=19 Score=28.59 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=54.4
Q ss_pred HHHHHHHhhCCCeEEEEccCCCCCCCc---------hHHHHHHHhhhCCCCEEEE---------------ccchHHHHHH
Q 023900 143 EQTVLNRLKQGEIVALISDAGTPGISD---------PGTELAKLCVDEKIPVVPI---------------PGASAFVAAL 198 (275)
Q Consensus 143 ~~~i~~~l~~G~~Vv~LS~~GDP~iys---------~~~~l~~~l~~~gi~veVI---------------PGISS~~aaa 198 (275)
.+.+...-++|.+++++| .+.....+ ....+...+...|+.++.+ |-+-.+..++
T Consensus 48 ~e~L~~L~~~G~~l~i~T-n~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~v~~s~~~~~~~~~~~KP~p~~~~~~~ 126 (176)
T 2fpr_A 48 IPQLLKLQKAGYKLVMIT-NQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKLVERYL 126 (176)
T ss_dssp HHHHHHHHHTTEEEEEEE-ECTTTTBTTBCHHHHHHHHHHHHHHHHHTTCCEEEEEEECCCGGGCCSSSTTSCGGGGGGC
T ss_pred HHHHHHHHHCCCEEEEEE-CCccccccccchHhhhhhHHHHHHHHHHcCCCeeEEEEcCCCCcccccccCCCHHHHHHHH
Confidence 333433335688999997 44322222 2233344455567665432 3355677778
Q ss_pred HhCCCCCccEEEEEEecCCCchhHHHHHHhhcCCCeEEEEcCC-cCHHHHHHHHH
Q 023900 199 SASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPP-HKLLQFLEETS 252 (275)
Q Consensus 199 A~lGipl~~~~~v~~l~~~~~~~~~~l~~l~~~~~tlVl~~~~-~~~~~i~~~L~ 252 (275)
..+|++.++..++| + ...++..+...+-..+.+... .+..++.+.|.
T Consensus 127 ~~~gi~~~~~l~VG----D---~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~l~ 174 (176)
T 2fpr_A 127 AEQAMDRANSYVIG----D---RATDIQLAENMGINGLRYDRETLNWPMIGEQLT 174 (176)
T ss_dssp ----CCGGGCEEEE----S---SHHHHHHHHHHTSEEEECBTTTBCHHHHHHHTC
T ss_pred HHcCCCHHHEEEEc----C---CHHHHHHHHHcCCeEEEEcCCcccHHHHHHHHh
Confidence 88899888887775 1 234565555555555655555 45666655543
No 26
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=66.46 E-value=7.3 Score=30.91 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHhh-----CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHH
Q 023900 138 NESQREQTVLNRLK-----QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (275)
Q Consensus 138 ~~~e~~~~i~~~l~-----~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aa 197 (275)
+.++..+++.+.++ +|+-|.+++|.|.|+-. ...+.+.. +.++++|.|++--.+.
T Consensus 43 ~~~~~~~~i~~~i~~~~~d~g~GVLiL~DmGSp~n~--a~~l~~~~---~~~v~vI~gvnlpmll 102 (139)
T 3gdw_A 43 EVQTMYEQLRNQVITQKESLNNGILLLTDMGSLNSF--GNMLFEET---GIRTKAITMTSTMIVL 102 (139)
T ss_dssp CHHHHHHHHHHHHHTSTGGGTTCEEEEECSGGGGGH--HHHHHHHH---CCCEEEECSCCHHHHH
T ss_pred CHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCHHHH--HHHHHHhh---CCCEEEEeCCCHHHHH
Confidence 34555555555553 47778888888877533 23333322 5689999999876554
No 27
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=64.32 E-value=5.1 Score=31.42 Aligned_cols=55 Identities=16% Similarity=0.086 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHh---hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHH
Q 023900 138 NESQREQTVLNRL---KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (275)
Q Consensus 138 ~~~e~~~~i~~~l---~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aa 197 (275)
+.++..+++.+.+ .+|+-|.+++|.|.|+-. ...+.+.. +.++++|.|++--.+.
T Consensus 43 ~~~~~~~~i~~~i~~~d~~~GVLiL~DmGSp~n~--a~~l~~~~---~~~v~vI~gvnlpmll 100 (130)
T 3gx1_A 43 EVKAMYEKLKQTVVKLNPVKGVLILSDMGSLTSF--GNILTEEL---GIRTKTVTMVSTPVVL 100 (130)
T ss_dssp CHHHHHHHHHHHHHTSCCTTCEEEEECSGGGGTH--HHHHHHHH---CCCEEEECSCCHHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHH--HHHHHHhc---CCCEEEEeCCCHHHHH
Confidence 3455555555555 457778888888877543 23333322 5689999999866554
No 28
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=57.61 E-value=17 Score=36.60 Aligned_cols=90 Identities=8% Similarity=0.074 Sum_probs=55.0
Q ss_pred HHHHHhhCCEEEEcCCCCCHHHHhhcc---CCCcEEe-----cCCCCHHHHHHHHHHHhhCCCeEEEEccCCCCCCCchH
Q 023900 100 ALRVLKSANVILSEDTRHSGKLLQYYN---IKTPLLS-----YHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPG 171 (275)
Q Consensus 100 A~~~L~~ADvVi~~~~~~~~~lL~~~~---~~~~~i~-----~~~~~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~ 171 (275)
--++|++-|+++....-.-..+++.+. .+..++. |.-.+...+.+.+.+++++|+.|-++.+.|-.+....-
T Consensus 336 iF~~I~~~DiLl~~p~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~ds~Iv~ALi~AA~rGv~V~vLvel~arfdee~n 415 (705)
T 2o8r_A 336 LMEGIRRKDYLIHVPYYTYDYVVRLLMEAAISPDVSEIRLTQYRVAENSSIISALEAAAQSGKKVSVFVELKARFDEENN 415 (705)
T ss_dssp HHHHHHHCCEEEEETTBCSHHHHHHHHHHHTCTTEEEEEEEESCCCSCCHHHHHHHHHHHTTCEEEEEECCCSCC----C
T ss_pred HHHHHhhCCeEeeChhHhHHHHHHHHHHhccCCCceEEEEEEEEEcCCHHHHHHHHHHHHCCCEEEEEEeCCCCcchhhh
Confidence 578999999999865322344554432 2222322 21112367899999999999999888665633322222
Q ss_pred HHHHHHhhhCCCCEEEEccc
Q 023900 172 TELAKLCVDEKIPVVPIPGA 191 (275)
Q Consensus 172 ~~l~~~l~~~gi~veVIPGI 191 (275)
....++|.+.|++| +.|.
T Consensus 416 i~wa~~Le~aGv~V--v~g~ 433 (705)
T 2o8r_A 416 LRLSERMRRSGIRI--VYSM 433 (705)
T ss_dssp HHHHHHHHHHTCEE--EECC
T ss_pred HHHHHHHHHCCCEE--EEcc
Confidence 45567888888654 6664
No 29
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=55.34 E-value=34 Score=26.23 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEc
Q 023900 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (275)
Q Consensus 139 ~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIP 189 (275)
.++..+.+.++.++|-+|-++. .+.+..........+.+.+.|+++...+
T Consensus 39 ~~~i~~aL~~a~~rGV~Vril~-~~~~~~~~~~~~~~~~L~~~gv~v~~~~ 88 (155)
T 1byr_A 39 APDIMKALVAAKKRGVDVKIVI-DERGNTGRASIAAMNYIANSGIPLRTDS 88 (155)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEE-ESTTCCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred CHHHHHHHHHHHHCCCEEEEEE-eCccccccccHHHHHHHHHCCCeEEEcC
Confidence 3567788888889999998884 4544433334556677778899998874
No 30
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=55.15 E-value=76 Score=25.03 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEc-cchHHHHHHHhCCCCCccEEEEEEecCCCc
Q 023900 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP-GASAFVAALSASGLATDEFTFVGFLPKHAR 219 (275)
Q Consensus 141 e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIP-GISS~~aaaA~lGipl~~~~~v~~l~~~~~ 219 (275)
+..+++.+.+.+.++|.++ -.|. -+..+.++..++...|.++..++ +.+.+...... +.-++..++ ++..+.
T Consensus 27 ~~l~~~~~~i~~a~~I~i~-G~G~--S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~--~~~~d~~i~--iS~sG~ 99 (187)
T 3sho_A 27 EAIEAAVEAICRADHVIVV-GMGF--SAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLAN--LRPTDLMIG--VSVWRY 99 (187)
T ss_dssp HHHHHHHHHHHHCSEEEEE-CCGG--GHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHT--CCTTEEEEE--ECCSSC
T ss_pred HHHHHHHHHHHhCCEEEEE-ecCc--hHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhc--CCCCCEEEE--EeCCCC
Confidence 4456666777767788887 3553 33456677777778899999999 45555544443 333465544 344443
Q ss_pred hh--HHHHHHhhcCCC-eEEEEcCCc
Q 023900 220 SR--TERLMLSANEVK-TQIFYVPPH 242 (275)
Q Consensus 220 ~~--~~~l~~l~~~~~-tlVl~~~~~ 242 (275)
.. .+.++.+.+.+- +++|...+.
T Consensus 100 t~~~~~~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 100 LRDTVAALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 22 233344444444 455554433
No 31
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=44.32 E-value=89 Score=26.53 Aligned_cols=105 Identities=10% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCccchHHHHHHHHhh--CCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEccCCCCCCC
Q 023900 91 GNLEDITLRALRVLKS--ANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGIS 168 (275)
Q Consensus 91 GdpdlLTl~A~~~L~~--ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iy 168 (275)
|+.+.-...|++.+++ +|+|+. +..+-.+++.. .+.+++.... +-.+..+.+..+-+.+++++++ |.+.+.
T Consensus 46 ~~le~av~~a~~~~~~~~~dVIIS--RGgta~~Lr~~-~~iPVV~I~v-s~~Dil~aL~~a~~~~~kIavV---g~~~~~ 118 (225)
T 2pju_A 46 LGFEKAVTYIRKKLANERCDAIIA--AGSNGAYLKSR-LSVPVILIKP-SGYDVLQFLAKAGKLTSSIGVV---TYQETI 118 (225)
T ss_dssp CCHHHHHHHHHHHTTTSCCSEEEE--EHHHHHHHHTT-CSSCEEEECC-CHHHHHHHHHHTTCTTSCEEEE---EESSCC
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEe--CChHHHHHHhh-CCCCEEEecC-CHHHHHHHHHHHHhhCCcEEEE---eCchhh
Q ss_pred chH----------------------HHHHHHhhhCCCCEEEEccchHHHHHHHhCCCC
Q 023900 169 DPG----------------------TELAKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (275)
Q Consensus 169 s~~----------------------~~l~~~l~~~gi~veVIPGISS~~aaaA~lGip 204 (275)
... ...++.+.+.|+++ |=|-+...-.|.+.|++
T Consensus 119 ~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~G~~v--VVG~~~~~~~A~~~Gl~ 174 (225)
T 2pju_A 119 PALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEA--VVGAGLITDLAEEAGMT 174 (225)
T ss_dssp HHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCE--EEESHHHHHHHHHTTSE
T ss_pred hHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCCE--EECCHHHHHHHHHcCCc
No 32
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=43.10 E-value=1.2e+02 Score=23.75 Aligned_cols=90 Identities=17% Similarity=0.136 Sum_probs=54.5
Q ss_pred hCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCC--EE---EEcc--chHHHHHHHhCCCCCccEEEEEEecCCCchhHH
Q 023900 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIP--VV---PIPG--ASAFVAALSASGLATDEFTFVGFLPKHARSRTE 223 (275)
Q Consensus 151 ~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~--ve---VIPG--ISS~~aaaA~lGipl~~~~~v~~l~~~~~~~~~ 223 (275)
++|..++++| |.+. ......+++. .|+. +. +.++ +..+..++..+|++.++..++| + ...
T Consensus 82 ~~G~~v~ivT--~~~~-~~~~~~~l~~---~gl~~~f~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ig----D---~~~ 148 (187)
T 2wm8_A 82 SLGVPGAAAS--RTSE-IEGANQLLEL---FDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFD----D---ERR 148 (187)
T ss_dssp HHTCCEEEEE--CCSC-HHHHHHHHHH---TTCTTTEEEEEESSSCHHHHHHHHHHHHCCCGGGEEEEE----S---CHH
T ss_pred HCCceEEEEe--CCCC-hHHHHHHHHH---cCcHhhcceeEEEeCchHHHHHHHHHHcCCChHHEEEEe----C---Ccc
Confidence 4588999996 4331 1112233333 3432 33 2333 3457778899999998888874 1 235
Q ss_pred HHHHhhcCCCeEEEEcCCcCHHHHHHHHHh
Q 023900 224 RLMLSANEVKTQIFYVPPHKLLQFLEETSL 253 (275)
Q Consensus 224 ~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e 253 (275)
++..+...+-..+....+....++.+.|.+
T Consensus 149 Di~~a~~aG~~~i~v~~g~~~~~~~~~l~~ 178 (187)
T 2wm8_A 149 NIVDVSKLGVTCIHIQNGMNLQTLSQGLET 178 (187)
T ss_dssp HHHHHHTTTCEEEECSSSCCHHHHHHHHHH
T ss_pred ChHHHHHcCCEEEEECCCCChHHHHHHHHH
Confidence 666666666667777776666666666654
No 33
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=40.63 E-value=48 Score=26.23 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=28.9
Q ss_pred HHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhC-----CCCEEEEccchHHHHHH
Q 023900 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE-----KIPVVPIPGASAFVAAL 198 (275)
Q Consensus 143 ~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~-----gi~veVIPGISS~~aaa 198 (275)
+...++.+.+|+.|.+++|. +-|+-......+... +.++++|.|++--.+.-
T Consensus 48 i~~~i~~~~~~~gvlvLtDl----~GGSp~n~a~~~~~~~~~~~~~~v~vI~GvNLpmlle 104 (150)
T 3ipr_A 48 IKTAIENVQQGDGVLVMVDL----LSASPYNQAVLVINELEPALQKKIFVVSGTNLPMVLE 104 (150)
T ss_dssp HHHHHHHHCSSSCEEEEESS----TTSHHHHHHHHHHTTSCHHHHTTEEEEESCCHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEEeC----CCCCHHHHHHHHHHhhhhccCCCEEEEeCCCHHHHHH
Confidence 33344445567778888763 222222222333222 35899999998655443
No 34
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=40.03 E-value=1.3e+02 Score=23.23 Aligned_cols=96 Identities=13% Similarity=0.039 Sum_probs=49.7
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHH--------HhhccCCCcEEecCCCCHHHHHHHHHHHhhC
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKL--------LQYYNIKTPLLSYHKFNESQREQTVLNRLKQ 152 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~l--------L~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~ 152 (275)
.+|-+||+++ +++.+--+..+.|++...=+++-.....++ ++.+.....+..+- .+.+...+.+.+.++.
T Consensus 23 ~~iaVVGas~-~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~-vp~~~~~~vv~~~~~~ 100 (144)
T 2d59_A 23 KKIALVGASP-KPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLF-VKPKLTMEYVEQAIKK 100 (144)
T ss_dssp CEEEEETCCS-CTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEEC-SCHHHHHHHHHHHHHH
T ss_pred CEEEEEccCC-CCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEE-eCHHHHHHHHHHHHHc
Confidence 4799999997 666666666667776654344321111111 11121111221111 1223333334445556
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCC
Q 023900 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIP 184 (275)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~ 184 (275)
|-+++++ ..|.. ..++.+.+++.|++
T Consensus 101 gi~~i~~-~~g~~-----~~~l~~~a~~~Gi~ 126 (144)
T 2d59_A 101 GAKVVWF-QYNTY-----NREASKKADEAGLI 126 (144)
T ss_dssp TCSEEEE-CTTCC-----CHHHHHHHHHTTCE
T ss_pred CCCEEEE-CCCch-----HHHHHHHHHHcCCE
Confidence 6666677 45532 46778888888765
No 35
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=38.54 E-value=25 Score=27.65 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcC
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSED 114 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~ 114 (275)
|.-.|.|||.||.. ||....=+-+..++++.+.
T Consensus 1 Mt~dV~IIGaGpaG---L~aA~~La~~G~~V~v~Ek 33 (336)
T 3kkj_A 1 MTVPIAIIGTGIAG---LSAAQALTAAGHQVHLFDK 33 (336)
T ss_dssp -CCCEEEECCSHHH---HHHHHHHHHTTCCEEEECS
T ss_pred CCCCEEEECcCHHH---HHHHHHHHHCCCCEEEEEC
Confidence 55579999999953 6655544445579999974
No 36
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=37.93 E-value=47 Score=25.56 Aligned_cols=54 Identities=15% Similarity=0.030 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhh---CCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHH
Q 023900 139 ESQREQTVLNRLK---QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196 (275)
Q Consensus 139 ~~e~~~~i~~~l~---~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~a 196 (275)
.++..+++.+.++ +|+.|.+++|. +-|+-......+...+.+++++.|++--.+
T Consensus 41 ~~~~~~~i~~~i~~~~~~~gvliLtDl----~GGSp~n~a~~~~~~~~~v~vi~GvNlpml 97 (135)
T 1pdo_A 41 AETLIEKYNAQLAKLDTTKGVLFLVDT----WGGSPFNAASRIVVDKEHYEVIAGVNIPML 97 (135)
T ss_dssp HHHHHHHHHHHHTTSCCTTCEEEEESS----TTSHHHHHHHHHHTTCTTEEEEESCCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEC----CCCCHHHHHHHHHhccCCEEEEeCCCHHHH
Confidence 3445555555554 45678888763 122222222333333448999999986544
No 37
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=36.91 E-value=36 Score=25.70 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=30.6
Q ss_pred HHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCC-EEEEcc-chHHHHHHHhCCCCC
Q 023900 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIP-VVPIPG-ASAFVAALSASGLAT 205 (275)
Q Consensus 143 ~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~-veVIPG-ISS~~aaaA~lGipl 205 (275)
.+.+.+.+..++.|++.|.+| .+.......|.+.|++ +.++.| +.... ..|.|+
T Consensus 72 ~~~~~~~l~~~~~ivvyC~~G-----~rs~~aa~~L~~~G~~~v~~l~GG~~~W~----~~g~p~ 127 (129)
T 1tq1_A 72 LEQVSSHFGQSDNIIVGCQSG-----GRSIKATTDLLHAGFTGVKDIVGGYSAWA----KNGLPT 127 (129)
T ss_dssp HHHHTTTCCTTSSEEEEESSC-----SHHHHHHHHHHHHHCCSEEEEECCHHHHH----HHTCCC
T ss_pred HHHHHhhCCCCCeEEEECCCC-----cHHHHHHHHHHHcCCCCeEEeCCcHHHHH----hCCCCC
Confidence 334444455677888887554 2445566666666774 766654 54433 236664
No 38
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=36.04 E-value=1.3e+02 Score=22.49 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=44.3
Q ss_pred chHH-HHHHHHh-hCCEEEEcCCCCCHHHHh-hcc------CCCcEEecCCCCHHHHHHHHHHHh--hCCCeEEEEccCC
Q 023900 95 DITL-RALRVLK-SANVILSEDTRHSGKLLQ-YYN------IKTPLLSYHKFNESQREQTVLNRL--KQGEIVALISDAG 163 (275)
Q Consensus 95 lLTl-~A~~~L~-~ADvVi~~~~~~~~~lL~-~~~------~~~~~i~~~~~~~~e~~~~i~~~l--~~G~~Vv~LS~~G 163 (275)
.+|. .+.+.++ +-+.++. |-|...+.-. ... +++.-+.+......+..+.+.+.. .+++.|++.|.+|
T Consensus 6 ~is~~e~~~~l~~~~~~~li-DVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~~~~~~~~l~~~~~~~~~~~ivv~C~sG 84 (134)
T 1vee_A 6 SGSAKNAYTKLGTDDNAQLL-DIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKFD 84 (134)
T ss_dssp BCCHHHHHHHHHHCTTEEEE-ECSCHHHHHHTCEECCTTTSCCCEECCCCGGGHHHHHHHHHTTCSCGGGCEEEEECSSS
T ss_pred ccCHHHHHHHHHhCCCeEEE-EcCCHHHHhhcCCCcccccCCceEEeecccccChhHHHHHHHHhCCCCCCEEEEEeCCC
Confidence 3553 4455666 3578888 5555444332 221 122223332211122233333222 4467888888655
Q ss_pred CCCCCchHHHHHHHhhhCCCC-EEEEcc
Q 023900 164 TPGISDPGTELAKLCVDEKIP-VVPIPG 190 (275)
Q Consensus 164 DP~iys~~~~l~~~l~~~gi~-veVIPG 190 (275)
. +.......|.+.|+. |..+.|
T Consensus 85 ~-----RS~~aa~~L~~~G~~~v~~l~G 107 (134)
T 1vee_A 85 G-----NSELVAELVALNGFKSAYAIKD 107 (134)
T ss_dssp T-----THHHHHHHHHHHTCSEEEECTT
T ss_pred C-----cHHHHHHHHHHcCCcceEEecC
Confidence 2 445556666677874 655544
No 39
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=35.44 E-value=85 Score=26.79 Aligned_cols=57 Identities=12% Similarity=0.098 Sum_probs=37.5
Q ss_pred HHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEE-EccchHHHHHHHhCCCCCc
Q 023900 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVP-IPGASAFVAALSASGLATD 206 (275)
Q Consensus 143 ~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veV-IPGISS~~aaaA~lGipl~ 206 (275)
++...+.+++| .++.+ ++| ++..++++++.+...++.+ ||---.....+...|+++.
T Consensus 17 A~~A~~~V~~g-~~Igl-gsG-----ST~~~~i~~L~~~~~~itv~VtnS~~~a~~l~~~gi~l~ 74 (224)
T 3kwm_A 17 ATEAAKSITTE-ITLGV-GTG-----STVGFLIEELVNYRDKIKTVVSSSEDSTRKLKALGFDVV 74 (224)
T ss_dssp HHHHHTTCCSS-EEEEE-CCS-----HHHHHHHHHGGGCTTTEEEEEESCHHHHHHHHHTTCCBC
T ss_pred HHHHHHhCCCC-CEEEE-CCc-----HHHHHHHHHHHhhcCceEEEECCcHHHHHHHHHcCCeEE
Confidence 34444555554 68888 677 7788899999875446766 6654444455566799864
No 40
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=32.27 E-value=1.5e+02 Score=24.96 Aligned_cols=88 Identities=10% Similarity=0.050 Sum_probs=45.2
Q ss_pred CeEEEEecCCCCccchHHHHHHHHh-hCCEEEEcCCCCCHHHHhhccCC-CcEEecCCCCHHHHHHHHHHHhhCCCeEEE
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLK-SANVILSEDTRHSGKLLQYYNIK-TPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~-~ADvVi~~~~~~~~~lL~~~~~~-~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~ 158 (275)
.++.|||.|. -=..|+..+++ .|++.+... ...+++.+..... .+.+ ...+..++ -++-+.++
T Consensus 32 k~VLVVGgG~----va~~ka~~Ll~~GA~VtVvap-~~~~~l~~l~~~~~i~~i-~~~~~~~d---------L~~adLVI 96 (223)
T 3dfz_A 32 RSVLVVGGGT----IATRRIKGFLQEGAAITVVAP-TVSAEINEWEAKGQLRVK-RKKVGEED---------LLNVFFIV 96 (223)
T ss_dssp CCEEEECCSH----HHHHHHHHHGGGCCCEEEECS-SCCHHHHHHHHTTSCEEE-CSCCCGGG---------SSSCSEEE
T ss_pred CEEEEECCCH----HHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHcCCcEEE-ECCCCHhH---------hCCCCEEE
Confidence 4699999984 23344444444 378888854 3444433322221 2222 12222211 23567888
Q ss_pred EccCCCCCCCchHHHHHHHhhhCCCCEEEE
Q 023900 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPI 188 (275)
Q Consensus 159 LS~~GDP~iys~~~~l~~~l~~~gi~veVI 188 (275)
.+ +|||-+. ..+.+.++ .|+.|.++
T Consensus 97 aA-T~d~~~N---~~I~~~ak-~gi~VNvv 121 (223)
T 3dfz_A 97 VA-TNDQAVN---KFVKQHIK-NDQLVNMA 121 (223)
T ss_dssp EC-CCCTHHH---HHHHHHSC-TTCEEEC-
T ss_pred EC-CCCHHHH---HHHHHHHh-CCCEEEEe
Confidence 84 8988554 33444444 66665444
No 41
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=31.50 E-value=52 Score=28.21 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=35.2
Q ss_pred HHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhC----CCCEEEEccchHHHHHHHhCCCCCc
Q 023900 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE----KIPVVPIPGASAFVAALSASGLATD 206 (275)
Q Consensus 142 ~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~----gi~veVIPGISS~~aaaA~lGipl~ 206 (275)
.++...+.+++| .++.+ .+| ++..+++++|.+. +.++.+||---.....+...|+++.
T Consensus 8 iA~~A~~~V~dg-~vIgL-GsG-----ST~~~~i~~L~~~~~~~~~~i~~VttS~~t~~~l~~~Gi~l~ 69 (225)
T 3l7o_A 8 AGVRAAQYVEDG-MIVGL-GTG-----STAYYFVEEVGRRVQEEGLQVIGVTTSSRTTAQAQALGIPLK 69 (225)
T ss_dssp HHHHHHTTCCTT-CEEEE-CCS-----TTHHHHHHHHHHHHHHHCCCCEEEESSHHHHHHHHHHTCCBC
T ss_pred HHHHHHHhCCCC-CEEEE-CCc-----HHHHHHHHHHHHhhhhcCCCEEEEcCCHHHHHHHhccCceEE
Confidence 344555666665 57788 677 5556666666543 5567767654434445556799864
No 42
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=31.24 E-value=95 Score=24.92 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 023900 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (275)
Q Consensus 141 e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~ 200 (275)
+.++..++.+.+|+.|.+++|. +-|+-......+.+ +.++++|.|++--.+.-+.
T Consensus 65 ~~~~~~i~~~~~~~gVLiLtDl----~GGSP~n~a~~~~~-~~~v~vItGvNLpMlle~~ 119 (159)
T 3mtq_A 65 QQVEALVARFPAQDELIVITDI----FAGSVNNEFVRFLS-RPHFHLLSGLNLPLIIDLL 119 (159)
T ss_dssp HHHHHHHHTSCTTSEEEEEESC----TTSHHHHHHHGGGG-STTEEEEECCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEeC----CCCCHHHHHHHHhc-CCCeEEEeCCCHHHHHHHH
Confidence 3344444445567889888763 22222233333333 4689999999866555444
No 43
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=30.29 E-value=1.6e+02 Score=24.91 Aligned_cols=93 Identities=9% Similarity=0.015 Sum_probs=55.5
Q ss_pred CCCeEEEEecCCCCccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcE-------------------Ee----cC
Q 023900 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPL-------------------LS----YH 135 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~-------------------i~----~~ 135 (275)
..+.|.=||+|+|. +|..-. +...-|++-| .++..++.......+ +. ++
T Consensus 39 ~~~~vLDvGcGtG~---~~~~l~---~~~~~v~gvD--~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h 110 (257)
T 4hg2_A 39 ARGDALDCGCGSGQ---ASLGLA---EFFERVHAVD--PGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMH 110 (257)
T ss_dssp CSSEEEEESCTTTT---THHHHH---TTCSEEEEEE--SCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCT
T ss_pred CCCCEEEEcCCCCH---HHHHHH---HhCCEEEEEe--CcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehh
Confidence 34678999999985 343322 2333455534 345555543221111 10 12
Q ss_pred CCCHHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhh
Q 023900 136 KFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD 180 (275)
Q Consensus 136 ~~~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~ 180 (275)
..+.++..+++...++.|..++++ ..|.+.+......+++++..
T Consensus 111 ~~~~~~~~~e~~rvLkpgG~l~~~-~~~~~~~~~~~~~~~~~~~~ 154 (257)
T 4hg2_A 111 WFDLDRFWAELRRVARPGAVFAAV-TYGLTRVDPEVDAVVDRLYH 154 (257)
T ss_dssp TCCHHHHHHHHHHHEEEEEEEEEE-EECCCBCCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHcCCCCEEEEE-ECCCCCCCHHHHHHHHHHHh
Confidence 234566788888888988889988 47888877666666666644
No 44
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=30.23 E-value=50 Score=26.02 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=29.2
Q ss_pred HHHHHHHh-hCCCeEEEEccC--CCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 023900 143 EQTVLNRL-KQGEIVALISDA--GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (275)
Q Consensus 143 ~~~i~~~l-~~G~~Vv~LS~~--GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~ 200 (275)
++..++.+ .+|+.|.+++|. |.| ......+.+ +.++++|.|++--.+.-+.
T Consensus 50 i~~~i~~~~~~~~gvliLtDl~GGSp------~n~a~~l~~-~~~v~vItGvNLpMlle~~ 103 (144)
T 3lfh_A 50 VEKIIKEKLQEDKEIIIVVDLFGGSP------FNIALSMMK-EYDVKVITGINMPMLVELL 103 (144)
T ss_dssp HHHHHHHHHTTTCEEEEEESSSSSHH------HHHHHHHHH-HHCCEEEESCCHHHHHHHH
T ss_pred HHHHHHHhhCCCCcEEEEEeCCCCCH------HHHHHHHhc-CCCEEEEeCCCHHHHHHHH
Confidence 33444555 567889888764 433 222222222 3468999999866555443
No 45
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=29.51 E-value=2.1e+02 Score=22.64 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHh------hhCCCCEEEEccchHHH
Q 023900 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLC------VDEKIPVVPIPGASAFV 195 (275)
Q Consensus 141 e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l------~~~gi~veVIPGISS~~ 195 (275)
+.++.+.+.+.++++|.++ -.|... ....++...+ ...|+++..+++-++..
T Consensus 33 ~~~~~i~~~i~~a~~I~i~-G~G~S~--~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~ 90 (199)
T 1x92_A 33 QASLVMVNALLNEGKILSC-GNGGSA--GDAQHFSSELLNRFERERPSLPAVALTTDSSTI 90 (199)
T ss_dssp HHHHHHHHHHHTTCCEEEE-CSTHHH--HHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHH
T ss_pred HHHHHHHHHHHCCCEEEEE-cCchhH--HHHHHHHHHHhcCcccCCCCCceEecCCChhHH
Confidence 4555566778888888887 355422 3445666666 45678888777554443
No 46
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=28.40 E-value=2.4e+02 Score=22.94 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=41.7
Q ss_pred CccchHHHHHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEccCCC
Q 023900 92 NLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGT 164 (275)
Q Consensus 92 dpdlLTl~A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS~~GD 164 (275)
+.+.-...|++.=+.+|+|+.-. .+-.+++.. .+.+++.... +-.+..+.+..+-+.+.+++++. .+.
T Consensus 37 ~l~~~v~~a~~~~~~~dVIISRG--gta~~lr~~-~~iPVV~I~~-s~~Dil~al~~a~~~~~kIavvg-~~~ 104 (196)
T 2q5c_A 37 SLTRASKIAFGLQDEVDAIISRG--ATSDYIKKS-VSIPSISIKV-TRFDTMRAVYNAKRFGNELALIA-YKH 104 (196)
T ss_dssp CHHHHHHHHHHHTTTCSEEEEEH--HHHHHHHTT-CSSCEEEECC-CHHHHHHHHHHHGGGCSEEEEEE-ESS
T ss_pred CHHHHHHHHHHhcCCCeEEEECC--hHHHHHHHh-CCCCEEEEcC-CHhHHHHHHHHHHhhCCcEEEEe-Ccc
Confidence 34544555555524689888843 223455543 3467777653 44567777777766678999994 444
No 47
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=28.25 E-value=2.2e+02 Score=22.42 Aligned_cols=48 Identities=15% Similarity=0.287 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhh------hCCCCEEEEccc
Q 023900 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCV------DEKIPVVPIPGA 191 (275)
Q Consensus 141 e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~------~~gi~veVIPGI 191 (275)
+..+.+.+.+.++++|.++ -.|.-. ....++..++. ..|+++..+++-
T Consensus 29 ~~~~~~~~~i~~a~~I~i~-G~G~S~--~~A~~~~~~l~~~~~~~~~g~~~~~~~~~ 82 (196)
T 2yva_A 29 RAAMTLVQSLLNGNKILCC-GNGTSA--ANAQHFAASMINRFETERPSLPAIALNTD 82 (196)
T ss_dssp HHHHHHHHHHHTTCCEEEE-ESTHHH--HHHHHHHHHHHTCSSSCCCCCCEEESSCC
T ss_pred HHHHHHHHHHHcCCEEEEE-eCchhh--HHHHHHHHHHhccccccCCCCceEeecCc
Confidence 5677788888888888888 355422 33455556565 567888777643
No 48
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=28.00 E-value=1.6e+02 Score=20.88 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=43.9
Q ss_pred chHHH-HHHHHhhCCEEEEcCCCCCHHHHhhccCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHH
Q 023900 95 DITLR-ALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTE 173 (275)
Q Consensus 95 lLTl~-A~~~L~~ADvVi~~~~~~~~~lL~~~~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~ 173 (275)
.+|.. ..+.+++-++++. |-|...+.-+...+++. .++ ..+..+.+ +.+.+++.|++.|..|. +...
T Consensus 6 ~i~~~~l~~~~~~~~~~li-DvR~~~e~~~ghIpgA~--~ip---~~~l~~~~-~~l~~~~~ivvyc~~g~-----rs~~ 73 (108)
T 1gmx_A 6 CINVADAHQKLQEKEAVLV-DIRDPQSFAMGHAVQAF--HLT---NDTLGAFM-RDNDFDTPVMVMCYHGN-----SSKG 73 (108)
T ss_dssp EECHHHHHHHHHTTCCEEE-ECSCHHHHHHCEETTCE--ECC---HHHHHHHH-HHSCTTSCEEEECSSSS-----HHHH
T ss_pred ccCHHHHHHHHhCCCCEEE-EcCCHHHHHhCCCccCE--eCC---HHHHHHHH-HhcCCCCCEEEEcCCCc-----hHHH
Confidence 34433 3455666677787 55553333322222322 222 22222223 33566788888875542 4566
Q ss_pred HHHHhhhCCCC-EEEEcc
Q 023900 174 LAKLCVDEKIP-VVPIPG 190 (275)
Q Consensus 174 l~~~l~~~gi~-veVIPG 190 (275)
....|.+.|++ +.++.|
T Consensus 74 a~~~L~~~G~~~v~~l~G 91 (108)
T 1gmx_A 74 AAQYLLQQGYDVVYSIDG 91 (108)
T ss_dssp HHHHHHHHTCSSEEEETT
T ss_pred HHHHHHHcCCceEEEecC
Confidence 66677777874 766665
No 49
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=27.58 E-value=1.4e+02 Score=23.02 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=28.2
Q ss_pred HHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 023900 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (275)
Q Consensus 144 ~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~ 200 (275)
+..++.+.. +.|.+++|. +-|+-......+...+.+++++.|++--.+.-+.
T Consensus 53 ~~~i~~~~~-~gvliLtDl----~GGSp~n~a~~~~~~~~~v~vi~GvNlpmlle~~ 104 (142)
T 3bed_A 53 AAILKEAGN-VPTLVLADL----XGGTPCNVAMMAMGTYPQLRVVAGLNLAMAIEAA 104 (142)
T ss_dssp HHHHHHHCS-CCEEEEESS----TTSHHHHHHHHHTTTCTTEEEEESCCHHHHHHHH
T ss_pred HHHHHhcCC-CCEEEEEEC----CCCHHHHHHHHHhccCCCEEEEeCCCHHHHHHHH
Confidence 333444444 568888763 2222222233333334479999999876654443
No 50
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=27.41 E-value=93 Score=23.82 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=33.8
Q ss_pred hhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccch
Q 023900 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (275)
Q Consensus 150 l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGIS 192 (275)
+..+-.|+++ =.|...-+..-.++.+.+++.|+.+|+.+=..
T Consensus 58 l~~~~evlii-GtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~~ 99 (122)
T 2ab1_A 58 VEKGVQTLVI-GRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQ 99 (122)
T ss_dssp HTTCCSEEEE-EECSSCCSCCCHHHHHHHHHTTCEEEEECHHH
T ss_pred hhCCCCEEEE-CCCCCCccCCCHHHHHHHHHcCCEEEEeCHHH
Confidence 4455789999 48999988666888999999999999986443
No 51
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=27.37 E-value=2.1e+02 Score=21.95 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=17.0
Q ss_pred CeEEEEecCCCCccchHHHHHHHHhhC
Q 023900 81 PGLYLVATPIGNLEDITLRALRVLKSA 107 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLTl~A~~~L~~A 107 (275)
.+|-+||+++ +|+.+--.-.+.|.+.
T Consensus 14 ~~IavIGas~-~~g~~G~~~~~~L~~~ 39 (145)
T 2duw_A 14 RTIALVGASD-KPDRPSYRVMKYLLDQ 39 (145)
T ss_dssp CCEEEESCCS-CTTSHHHHHHHHHHHH
T ss_pred CEEEEECcCC-CCCChHHHHHHHHHHC
Confidence 3699999997 5555555555555543
No 52
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=26.45 E-value=1.4e+02 Score=21.38 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=34.2
Q ss_pred HHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCC-EEEEccchHHHHHHHhCCCCC
Q 023900 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIP-VVPIPGASAFVAALSASGLAT 205 (275)
Q Consensus 142 ~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~-veVIPGISS~~aaaA~lGipl 205 (275)
..+.+.+.+.+++.|++.|..| .+.......|.+.|++ |.++.|- ..+....|.|.
T Consensus 41 l~~~~~~~l~~~~~ivvyc~~g-----~rs~~a~~~L~~~G~~~v~~l~GG---~~~W~~~g~~~ 97 (106)
T 3hix_A 41 LVDRASSSLEKSRDIYVYGAGD-----EQTSQAVNLLRSAGFEHVSELKGG---LAAWKAIGGPT 97 (106)
T ss_dssp HHHHHHHHSCTTSCEEEECSSH-----HHHHHHHHHHHHTTCSCEEECTTH---HHHHHHTTCCE
T ss_pred HHHHHHhcCCCCCeEEEEECCC-----ChHHHHHHHHHHcCCcCEEEecCC---HHHHHHCCCCC
Confidence 3444545666778888886433 2445666677777884 7777753 23455566654
No 53
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=25.09 E-value=67 Score=22.88 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=30.5
Q ss_pred hhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC
Q 023900 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT 205 (275)
Q Consensus 150 l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl 205 (275)
+.+++.|++.|.+| .+.......|.+.|+++.++.|-- .+....|.|.
T Consensus 53 l~~~~~iv~yC~~g-----~rs~~a~~~L~~~G~~v~~l~GG~---~~W~~~g~p~ 100 (103)
T 3eme_A 53 FNKNEIYYIVCAGG-----VRSAKVVEYLEANGIDAVNVEGGM---HAWGDEGLEI 100 (103)
T ss_dssp CCTTSEEEEECSSS-----SHHHHHHHHHHTTTCEEEEETTHH---HHHCSSSCBC
T ss_pred CCCCCeEEEECCCC-----hHHHHHHHHHHHCCCCeEEeCCCH---HHHHHCCCcC
Confidence 35677888887444 355667777888888888887631 2334455554
No 54
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=24.98 E-value=1.5e+02 Score=25.85 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=36.3
Q ss_pred HHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhh---CCCCEEEEccchHHHHHHHhCCCCCc
Q 023900 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD---EKIPVVPIPGASAFVAALSASGLATD 206 (275)
Q Consensus 143 ~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~---~gi~veVIPGISS~~aaaA~lGipl~ 206 (275)
++...+.+++| .++.+ .+| ++..++++++.+ +|.++.+||---.....+...|+++.
T Consensus 32 A~~A~~~V~dg-~vIgL-GsG-----ST~~~~i~~L~~~~~~gl~ItvVttS~~ta~~l~~~GI~l~ 91 (255)
T 3hhe_A 32 ALKALEFVEDD-MRLGI-GSG-----STVNEFIPLLGERVANGLRVTCVATSQYSEQLCHKFGVPIS 91 (255)
T ss_dssp HHHHHTTCCTT-EEEEE-CCS-----HHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHTTCCBC
T ss_pred HHHHHHhCCCC-CEEEE-CCc-----HHHHHHHHHHHHhhccCCcEEEEcCCHHHHHHHHHcCCcEE
Confidence 33444555555 68888 677 666677766644 35678888765544555667899863
No 55
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=24.86 E-value=1e+02 Score=26.96 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEccCCC-CCCC-chHHHHHHHhhhCCCCEEEEccchHHHH--HHHhCCCC
Q 023900 138 NESQREQTVLNRLKQGEIVALISDAGT-PGIS-DPGTELAKLCVDEKIPVVPIPGASAFVA--ALSASGLA 204 (275)
Q Consensus 138 ~~~e~~~~i~~~l~~G~~Vv~LS~~GD-P~iy-s~~~~l~~~l~~~gi~veVIPGISS~~a--aaA~lGip 204 (275)
+.+++.+.+.+..+.|-+-+.++ +|. |.+. ....++++.+++.++.+.+-+|..+-.. .....|+.
T Consensus 85 s~eei~~~i~~~~~~g~~~i~~~-gGe~p~~~~~~~~~li~~i~~~~~~i~~s~g~l~~e~l~~L~~ag~~ 154 (348)
T 3iix_A 85 TPEEIVERARLAVQFGAKTIVLQ-SGEDPYXMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGAD 154 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEE-ESCCGGGTTHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEE-eCCCCCccHHHHHHHHHHHHhcCceEEEecCCCCHHHHHHHHHhCCC
Confidence 45667777766656665444553 687 7665 5677888888887888888788754333 33344553
No 56
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=23.07 E-value=2e+02 Score=25.74 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHH
Q 023900 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (275)
Q Consensus 140 ~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aa 197 (275)
......+..+.++|++.-+..+-+-|..- |..++..|.+.|+++.+||= +++.+.
T Consensus 132 ~tv~~~l~~A~~~gk~~~V~v~EsrP~~q--G~~la~~L~~~gI~vtli~D-sa~~~~ 186 (315)
T 3ecs_A 132 RVVLRVLEAAVAAKKRFSVYVTESQPDLS--GKKMAKALCHLNVPVTVVLD-AAVGYI 186 (315)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEECCTTTTH--HHHHHHHHHTTTCCEEEECG-GGHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEEecCCCcch--HHHHHHHHHHcCCCEEEEeh-hHHHHH
Confidence 33444555555677753333246888764 46778999999999999986 433333
No 57
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=23.00 E-value=2.5e+02 Score=21.25 Aligned_cols=85 Identities=13% Similarity=0.207 Sum_probs=42.2
Q ss_pred HHHHHhh-CCEEEEcCCCCCHHHHh-hcc------CCCcEEecCCCC---HHHHHHHHHHHh-----hCCCeEEEEccCC
Q 023900 100 ALRVLKS-ANVILSEDTRHSGKLLQ-YYN------IKTPLLSYHKFN---ESQREQTVLNRL-----KQGEIVALISDAG 163 (275)
Q Consensus 100 A~~~L~~-ADvVi~~~~~~~~~lL~-~~~------~~~~~i~~~~~~---~~e~~~~i~~~l-----~~G~~Vv~LS~~G 163 (275)
..+.+++ -++++. |-|...+.-. ... +++.-+++...+ ..+..+.+.+.+ .+++.|++.|.+|
T Consensus 12 l~~~l~~~~~~~li-DVR~~~e~~~~ghi~~~g~~pgAv~ip~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ivvyC~~G 90 (148)
T 2fsx_A 12 AWEMLSDNPRAVLV-DVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDRIPADADQHERPVIFLCRSG 90 (148)
T ss_dssp HHHHHHHCTTCEEE-ECSCHHHHHHTCEECCGGGTCCCEECCSBCTTSCBCTTHHHHHHHHCC-------CCEEEECSSS
T ss_pred HHHHHhcCCCeEEE-ECCCHHHHHhcCCCccccCCCCcEEeeeeccccccCHHHHHHHHHHHhhccCCCCCEEEEEcCCC
Confidence 3455664 578888 5555444432 222 333223322200 011233444333 4567788887555
Q ss_pred CCCCCchHHHHHHHhhhCCC-CEEEEcc
Q 023900 164 TPGISDPGTELAKLCVDEKI-PVVPIPG 190 (275)
Q Consensus 164 DP~iys~~~~l~~~l~~~gi-~veVIPG 190 (275)
.+.......|.+.|+ ++.++.|
T Consensus 91 -----~rS~~aa~~L~~~G~~~v~~l~G 113 (148)
T 2fsx_A 91 -----NRSIGAAEVATEAGITPAYNVLD 113 (148)
T ss_dssp -----STHHHHHHHHHHTTCCSEEEETT
T ss_pred -----hhHHHHHHHHHHcCCcceEEEcC
Confidence 234556666777788 4877766
No 58
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=22.95 E-value=68 Score=26.81 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=15.5
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEE
Q 023900 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPI 188 (275)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVI 188 (275)
|+++++- .+|--+.|.-+.++++.|.+.|++|.++
T Consensus 7 ~k~I~lg-iTGs~aa~~k~~~ll~~L~~~g~eV~vv 41 (201)
T 3lqk_A 7 GKHVGFG-LTGSHCTYHEVLPQMERLVELGAKVTPF 41 (201)
T ss_dssp TCEEEEE-CCSCGGGGGGTHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEE-EEChHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 3444444 2444444433344445554444444443
No 59
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=22.79 E-value=97 Score=26.46 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=36.7
Q ss_pred HHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhC----CCCEEEEccchHHHHHHHhCCCCCc
Q 023900 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE----KIPVVPIPGASAFVAALSASGLATD 206 (275)
Q Consensus 143 ~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~----gi~veVIPGISS~~aaaA~lGipl~ 206 (275)
++...+.+++| .++.+ ++| ++..++++++.+. +.++.+||---.....+...|+++.
T Consensus 11 A~~A~~~I~~g-~~Igl-gsG-----ST~~~~~~~L~~~~~~~~l~itvVtnS~~~a~~l~~~gi~v~ 71 (226)
T 2pjm_A 11 AKEAVKLVKDG-MVIGL-GTG-----STAALFIRELGNRIREEELTVFGIPTSFEAKMLAMQYEIPLV 71 (226)
T ss_dssp HHHHGGGCCTT-CEEEE-CCS-----HHHHHHHHHHHHHHHHHTCCCEEEESSHHHHHHHHHTTCCBC
T ss_pred HHHHHHHCCCC-CEEEE-CCC-----HHHHHHHHHHHhhhhccCCcEEEEeCcHHHHHHHHhcCCeEE
Confidence 34445555555 67888 777 5666777776543 4567777766555566778898863
No 60
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=22.66 E-value=1.5e+02 Score=25.88 Aligned_cols=49 Identities=10% Similarity=-0.066 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCC--CEEEEc
Q 023900 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKI--PVVPIP 189 (275)
Q Consensus 140 ~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi--~veVIP 189 (275)
++..+.+......|-.-+.++ .|.|++..-..++++.+.+.+. .+.+..
T Consensus 53 e~i~~~i~~~~~~g~~~i~~t-GGEPll~~~l~~li~~~~~~~~~~~i~i~T 103 (340)
T 1tv8_A 53 DEMARIAKVYAELGVKKIRIT-GGEPLMRRDLDVLIAKLNQIDGIEDIGLTT 103 (340)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE-SSCGGGSTTHHHHHHHHTTCTTCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEe-CCCccchhhHHHHHHHHHhCCCCCeEEEEe
Confidence 344333333334455556664 7999998777788888877654 555543
No 61
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=22.65 E-value=76 Score=31.69 Aligned_cols=85 Identities=12% Similarity=0.205 Sum_probs=49.8
Q ss_pred HHHHHhhCCEEEEcCCCCCHHHHhhccC---C--CcEE--e-cCCCCHHHHHHHHHHHhhCCCeEEEEccCCCCCCC-ch
Q 023900 100 ALRVLKSANVILSEDTRHSGKLLQYYNI---K--TPLL--S-YHKFNESQREQTVLNRLKQGEIVALISDAGTPGIS-DP 170 (275)
Q Consensus 100 A~~~L~~ADvVi~~~~~~~~~lL~~~~~---~--~~~i--~-~~~~~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iy-s~ 170 (275)
--++|++-|+++......-..+++.+.. + ...| + |.-.......+.+.+++++|.+|-++. .+-+.+. ..
T Consensus 331 if~~i~~~D~ll~~P~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~d~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~~~ 409 (687)
T 1xdp_A 331 GFDAIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHNGKKVTVVV-ELQARFDEEA 409 (687)
T ss_dssp HHHHHHHSCEEEEETTBCTHHHHHHHHHHHHCTTEEEEEEEESSCCTTCHHHHHHHHHHHTTCEEEEEE-CTTCSSTTTT
T ss_pred hhHHHhcCCEEEECchhhhhhHHHHHHHHhhCCcceEEEEEeeeecCcHHHHHHHHHHHhcCCEEEEEE-CCCcccchhh
Confidence 4678899999998653222345544332 1 1122 2 221134678899999999999999995 4544221 11
Q ss_pred HHHHHHHhhhCCCCE
Q 023900 171 GTELAKLCVDEKIPV 185 (275)
Q Consensus 171 ~~~l~~~l~~~gi~v 185 (275)
.....+.|.+.|++|
T Consensus 410 n~~~~~~L~~aGV~V 424 (687)
T 1xdp_A 410 NIHWAKRLTEAGVHV 424 (687)
T ss_dssp TTTTTHHHHHHTCEE
T ss_pred HHHHHHHHHHCCCEE
Confidence 223445566667665
No 62
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=22.63 E-value=2.2e+02 Score=20.58 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=24.1
Q ss_pred hhCC-CeEEEEcc-CCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 023900 150 LKQG-EIVALISD-AGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (275)
Q Consensus 150 l~~G-~~Vv~LS~-~GDP~iys~~~~l~~~l~~~gi~veVIPG 190 (275)
+.++ +.|++.|. +| .+.......|.+.|+++.++.|
T Consensus 85 ~~~~~~~ivvyC~~~G-----~rs~~a~~~L~~~G~~v~~l~G 122 (134)
T 3g5j_A 85 LALNYDNIVIYCARGG-----MRSGSIVNLLSSLGVNVYQLEG 122 (134)
T ss_dssp HHTTCSEEEEECSSSS-----HHHHHHHHHHHHTTCCCEEETT
T ss_pred hccCCCeEEEEECCCC-----hHHHHHHHHHHHcCCceEEEeC
Confidence 4556 78888862 34 3445666677777888877766
No 63
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=22.61 E-value=72 Score=22.59 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=25.3
Q ss_pred hhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 023900 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (275)
Q Consensus 150 l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPG 190 (275)
+.+++.|++.|.+| .+.......|.+.|+++.++.|
T Consensus 53 l~~~~~ivvyC~~g-----~rs~~a~~~L~~~G~~v~~l~G 88 (100)
T 3foj_A 53 FNDNETYYIICKAG-----GRSAQVVQYLEQNGVNAVNVEG 88 (100)
T ss_dssp SCTTSEEEEECSSS-----HHHHHHHHHHHTTTCEEEEETT
T ss_pred CCCCCcEEEEcCCC-----chHHHHHHHHHHCCCCEEEecc
Confidence 45677888887444 3456667777788888877776
No 64
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=22.30 E-value=1.3e+02 Score=24.36 Aligned_cols=48 Identities=19% Similarity=0.073 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEE
Q 023900 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPI 188 (275)
Q Consensus 138 ~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVI 188 (275)
+.+++.+.+.++.++|=+|=++.|.+ .........+.+.+.|+++...
T Consensus 70 ~~~~i~~aL~~aa~rGV~Vrii~D~~---~~~~~~~~~~~l~~~gi~v~~~ 117 (196)
T 4ggj_A 70 SSPQLGRAVQLLHQRGVRVRVITDCD---YMALNGSQIGLLRKAGIQVRHD 117 (196)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEESSC---CC---CCHHHHHHHTTCEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcEEEEEecc---cccccHHHHHHHHhcCCCcccc
Confidence 34567888999999999887775422 2221222345667778887653
No 65
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=22.05 E-value=3.2e+02 Score=22.17 Aligned_cols=112 Identities=9% Similarity=0.118 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEE-EEccchHHHHHHHhCCCCCccEEEEEEecC
Q 023900 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVV-PIPGASAFVAALSASGLATDEFTFVGFLPK 216 (275)
Q Consensus 138 ~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~ve-VIPGISS~~aaaA~lGipl~~~~~v~~l~~ 216 (275)
+.++..+...+. .+|-+ +++| .| +++.++.+.+ ++||. +-....-+.-+...+.-.-....++++-..
T Consensus 37 ~l~~~v~~a~~~-~~~~d-VIIS-RG-----gta~~lr~~~---~iPVV~I~~s~~Dil~al~~a~~~~~kIavvg~~~~ 105 (196)
T 2q5c_A 37 SLTRASKIAFGL-QDEVD-AIIS-RG-----ATSDYIKKSV---SIPSISIKVTRFDTMRAVYNAKRFGNELALIAYKHS 105 (196)
T ss_dssp CHHHHHHHHHHH-TTTCS-EEEE-EH-----HHHHHHHTTC---SSCEEEECCCHHHHHHHHHHHGGGCSEEEEEEESSC
T ss_pred CHHHHHHHHHHh-cCCCe-EEEE-CC-----hHHHHHHHhC---CCCEEEEcCCHhHHHHHHHHHHhhCCcEEEEeCcch
Confidence 345555656565 55655 4554 34 4445554432 56764 444445555555555544456777776322
Q ss_pred CCchhHHHHHHhhcCCCeEEEEcCCcCHHHHHHHHHhhcCCCcEEEeEe
Q 023900 217 HARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYSRRCVIAR 265 (275)
Q Consensus 217 ~~~~~~~~l~~l~~~~~tlVl~~~~~~~~~i~~~L~e~~~~~~~v~V~e 265 (275)
. . ..+.+..++.-.-.+..|.+.......++.|.+. ...++|+-
T Consensus 106 ~-~-~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~---G~~vvVG~ 149 (196)
T 2q5c_A 106 I-V-DKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTE---NIKIVVSG 149 (196)
T ss_dssp S-S-CHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHT---TCCEEEEC
T ss_pred h-h-HHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHC---CCeEEECC
Confidence 2 1 1456777777666666788888888888888762 34556553
No 66
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=21.45 E-value=2.3e+02 Score=21.85 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=25.5
Q ss_pred HHHHHHhhhCCCCEEE--EccchHHHHHHHhCCCCCc
Q 023900 172 TELAKLCVDEKIPVVP--IPGASAFVAALSASGLATD 206 (275)
Q Consensus 172 ~~l~~~l~~~gi~veV--IPGISS~~aaaA~lGipl~ 206 (275)
..+.+.|.+.|+++++ .|+..++..++..+|++..
T Consensus 5 ~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~~~~ 41 (152)
T 3op6_A 5 KKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGK 41 (152)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTCCHHHHC----CCSS
T ss_pred HHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCCChh
Confidence 4567788888999887 6888889999999999985
No 67
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=21.38 E-value=4e+02 Score=23.01 Aligned_cols=110 Identities=11% Similarity=0.068 Sum_probs=61.9
Q ss_pred CeEEEEecCCCCccchH--HHHHHHHhhC-CEEEEcCCCCCHHHHhh-cc--CCCcEEe-cCCCCHHHHHHHHHHHhh-C
Q 023900 81 PGLYLVATPIGNLEDIT--LRALRVLKSA-NVILSEDTRHSGKLLQY-YN--IKTPLLS-YHKFNESQREQTVLNRLK-Q 152 (275)
Q Consensus 81 g~l~iVGvGPGdpdlLT--l~A~~~L~~A-DvVi~~~~~~~~~lL~~-~~--~~~~~i~-~~~~~~~e~~~~i~~~l~-~ 152 (275)
..+.=||.++...+.+- ...++.|++. |+.+.=|+.. .++++. +. .++.++. ... .. +..+.+.+.++ -
T Consensus 48 AdiIDIg~~s~~~eE~~rv~~vi~~l~~~~~~pisIDT~~-~~v~~aal~a~~Ga~iINdvs~-~~-d~~~~~~~~~a~~ 124 (271)
T 2yci_X 48 AHYLDVNTGPTADDPVRVMEWLVKTIQEVVDLPCCLDSTN-PDAIEAGLKVHRGHAMINSTSA-DQ-WKMDIFFPMAKKY 124 (271)
T ss_dssp CSEEEEECCSCSSCHHHHHHHHHHHHHHHCCCCEEEECSC-HHHHHHHHHHCCSCCEEEEECS-CH-HHHHHHHHHHHHH
T ss_pred CCEEEEcCCcCchhHHHHHHHHHHHHHHhCCCeEEEeCCC-HHHHHHHHHhCCCCCEEEECCC-Cc-cccHHHHHHHHHc
Confidence 35888888886554443 5556677654 7766656543 333332 22 2566653 322 22 22233444333 2
Q ss_pred CCeEEEEcc--CCCCCC----CchHHHHHHHhhhCCCC---EEEEccchH
Q 023900 153 GEIVALISD--AGTPGI----SDPGTELAKLCVDEKIP---VVPIPGASA 193 (275)
Q Consensus 153 G~~Vv~LS~--~GDP~i----ys~~~~l~~~l~~~gi~---veVIPGISS 193 (275)
|-.|+++.. .|.|-- .....+.++.+.+.|++ +-+=||+..
T Consensus 125 ~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gf 174 (271)
T 2yci_X 125 EAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILP 174 (271)
T ss_dssp TCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCC
T ss_pred CCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCc
Confidence 556777742 466663 23345666777778887 888898754
No 68
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=21.32 E-value=2.9e+02 Score=21.43 Aligned_cols=89 Identities=7% Similarity=0.059 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhCCCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCccEEEEEEecCCCch
Q 023900 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARS 220 (275)
Q Consensus 141 e~~~~i~~~l~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS~~aaaA~lGipl~~~~~v~~l~~~~~~ 220 (275)
+.++++.+.+.+.++|.++ -.|.- +..+.++..++...|.++..++... ...+.-++..++ ++..+..
T Consensus 25 ~~i~~~~~~i~~a~~I~i~-G~G~S--~~~A~~~~~~l~~~g~~~~~~~~~~-------~~~~~~~d~vI~--iS~sG~t 92 (186)
T 1m3s_A 25 EEADQLADHILSSHQIFTA-GAGRS--GLMAKSFAMRLMHMGFNAHIVGEIL-------TPPLAEGDLVII--GSGSGET 92 (186)
T ss_dssp HHHHHHHHHHHHCSCEEEE-CSHHH--HHHHHHHHHHHHHTTCCEEETTSTT-------CCCCCTTCEEEE--ECSSSCC
T ss_pred HHHHHHHHHHHcCCeEEEE-ecCHH--HHHHHHHHHHHHhcCCeEEEeCccc-------ccCCCCCCEEEE--EcCCCCc
Confidence 3456666777667788877 34532 3345566677777788888875541 123334465544 3444432
Q ss_pred h--HHHHHHhhcCCC-eEEEEcCC
Q 023900 221 R--TERLMLSANEVK-TQIFYVPP 241 (275)
Q Consensus 221 ~--~~~l~~l~~~~~-tlVl~~~~ 241 (275)
. .+.++.+.+.+. +++|...+
T Consensus 93 ~~~~~~~~~ak~~g~~vi~IT~~~ 116 (186)
T 1m3s_A 93 KSLIHTAAKAKSLHGIVAALTINP 116 (186)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCT
T ss_pred HHHHHHHHHHHHCCCEEEEEECCC
Confidence 1 233444444444 44444433
No 69
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=21.24 E-value=84 Score=27.42 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=35.0
Q ss_pred hCCCeEEEEccCCCCCCCchHHHHHHHhhh--CCCCEEEEccchHHHHHHHhCCCCC
Q 023900 151 KQGEIVALISDAGTPGISDPGTELAKLCVD--EKIPVVPIPGASAFVAALSASGLAT 205 (275)
Q Consensus 151 ~~G~~Vv~LS~~GDP~iys~~~~l~~~l~~--~gi~veVIPGISS~~aaaA~lGipl 205 (275)
.++.+++++ ..|| |+..+.++.+.. .++++-++|.-|. ...+..+|+|.
T Consensus 61 ~~~~d~vv~-~GGD----GTl~~v~~~l~~~~~~~~l~iiP~Gt~-N~~ar~lg~~~ 111 (304)
T 3s40_A 61 ASKVDLIIV-FGGD----GTVFECTNGLAPLEIRPTLAIIPGGTC-NDFSRTLGVPQ 111 (304)
T ss_dssp TTTCSEEEE-EECH----HHHHHHHHHHTTCSSCCEEEEEECSSC-CHHHHHTTCCS
T ss_pred hcCCCEEEE-Eccc----hHHHHHHHHHhhCCCCCcEEEecCCcH-HHHHHHcCCCc
Confidence 345566666 4899 667777877766 5788999998774 55556678874
No 70
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=20.66 E-value=2.1e+02 Score=21.55 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=49.7
Q ss_pred chHHH-HHHHHh-hCCEEEEcCCCCCHHHHh-hc--cCCCcEEecCCCCHHHHHHHHHHHhhCCCeEEEEccCCCCCCCc
Q 023900 95 DITLR-ALRVLK-SANVILSEDTRHSGKLLQ-YY--NIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISD 169 (275)
Q Consensus 95 lLTl~-A~~~L~-~ADvVi~~~~~~~~~lL~-~~--~~~~~~i~~~~~~~~e~~~~i~~~l~~G~~Vv~LS~~GDP~iys 169 (275)
.+|.. ..+.++ +-++++. |-|...+.-+ .- .+++.-+.+... .+ ...+ ..+.+++.|++.|.+|.
T Consensus 24 ~is~~el~~~l~~~~~~~li-DVR~~~E~~~~gh~~IpgAinip~~~l--~~-~~~~-~~l~~~~~ivvyC~~G~----- 93 (137)
T 1qxn_A 24 MLSPKDAYKLLQENPDITLI-DVRDPDELKAMGKPDVKNYKHMSRGKL--EP-LLAK-SGLDPEKPVVVFCKTAA----- 93 (137)
T ss_dssp EECHHHHHHHHHHCTTSEEE-ECCCHHHHHHTCEECCSSEEECCTTTS--HH-HHHH-HCCCTTSCEEEECCSSS-----
T ss_pred ccCHHHHHHHHhcCCCeEEE-ECCCHHHHHhcCCcCCCCCEEcchHHh--hh-HHhh-ccCCCCCeEEEEcCCCc-----
Confidence 34543 344555 4568888 5555444433 22 233322222221 11 1112 23456778888875553
Q ss_pred hHHHHHHHhhhCCC-CEEEEccchHHHHHHHhCCCCC
Q 023900 170 PGTELAKLCVDEKI-PVVPIPGASAFVAALSASGLAT 205 (275)
Q Consensus 170 ~~~~l~~~l~~~gi-~veVIPGISS~~aaaA~lGipl 205 (275)
+.......|.+.|+ +|.++.|-- .+....|.|+
T Consensus 94 rS~~aa~~L~~~G~~~v~~l~GG~---~~W~~~g~p~ 127 (137)
T 1qxn_A 94 RAALAGKTLREYGFKTIYNSEGGM---DKWLEEGLPS 127 (137)
T ss_dssp CHHHHHHHHHHHTCSCEEEESSCH---HHHHHTTCCE
T ss_pred HHHHHHHHHHHcCCcceEEEcCcH---HHHHHCCCCc
Confidence 34555666667787 587776542 2345666664
No 71
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=20.15 E-value=75 Score=26.75 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=20.2
Q ss_pred CCeEEEEccCCCCCCCchHHHHHHHhhhCCCCEEEEccchH
Q 023900 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193 (275)
Q Consensus 153 G~~Vv~LS~~GDP~iys~~~~l~~~l~~~gi~veVIPGISS 193 (275)
|+++++- .+|--..|-.+.++++.|.+.|.+|.++---++
T Consensus 5 ~k~Illg-iTGsiaayk~~~~ll~~L~~~g~eV~vv~T~~A 44 (207)
T 3mcu_A 5 GKRIGFG-FTGSHCTYEEVMPHLEKLIAEGAEVRPVVSYTV 44 (207)
T ss_dssp TCEEEEE-ECSCGGGGTTSHHHHHHHHHTTCEEEEEECC--
T ss_pred CCEEEEE-EEChHHHHHHHHHHHHHHHhCCCEEEEEEehHH
Confidence 4555555 356444443235566666666666655544333
No 72
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=20.09 E-value=34 Score=31.31 Aligned_cols=34 Identities=12% Similarity=0.269 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCCCccchHHHH-HHHHhhCCEEEEcC
Q 023900 79 LEPGLYLVATPIGNLEDITLRA-LRVLKSANVILSED 114 (275)
Q Consensus 79 ~~g~l~iVGvGPGdpdlLTl~A-~~~L~~ADvVi~~~ 114 (275)
|..+|.|||.||+.. -+.+. ++...+.+|.+.++
T Consensus 1 M~K~VvIIGgG~aGl--~aA~~L~~~~~~~~VtlI~~ 35 (430)
T 3hyw_A 1 MAKHVVVIGGGVGGI--ATAYNLRNLMPDLKITLISD 35 (430)
T ss_dssp -CCEEEEECSSHHHH--HHHHHHHHHCTTCEEEEECS
T ss_pred CCCcEEEECCCHHHH--HHHHHHhccCcCCeEEEEcC
Confidence 567899999999752 22222 23334578888854
No 73
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=20.03 E-value=1e+02 Score=27.38 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhCCCeEEEEccCCCCCCCc--hHHHHHHHhhhCCCCEEEEccch------HHHHHHHhCCCCC
Q 023900 141 QREQTVLNRLKQGEIVALISDAGTPGISD--PGTELAKLCVDEKIPVVPIPGAS------AFVAALSASGLAT 205 (275)
Q Consensus 141 e~~~~i~~~l~~G~~Vv~LS~~GDP~iys--~~~~l~~~l~~~gi~veVIPGIS------S~~aaaA~lGipl 205 (275)
...+.+.+.++.|-+-++- - .||+ .....++++++.|+++-|+|||. ++.-.+..+|+..
T Consensus 164 ~d~~~Lk~KvdAGAdf~iT-Q----~ffD~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~~Gv~i 231 (304)
T 3fst_A 164 ADLLNLKRKVDAGANRAIT-Q----FFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRI 231 (304)
T ss_dssp HHHHHHHHHHHHTCCEEEE-C----CCSCHHHHHHHHHHHHHTTCCSCEECEECCCSCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHcCCCEEEe-C----ccCCHHHHHHHHHHHHhcCCCCcEEEEecccCCHHHHHHHHHcCCCcC
Confidence 3455566666666654333 2 4564 34566788888899999999985 4444455667664
Done!