BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023901
MASLATSSFSSLQFLPRPKIPQPPFSSPSLLLRQRRTTYQFSSLVVSAQNDKKSTTTKEV
KKKAEEVEVEVEEELPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVS
FVIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSM
EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMN
MSGYSEKGFKRKLAVQALFGKVFYLSEVNNETSVW

High Scoring Gene Products

Symbol, full name Information P value
AT5G08540 protein from Arabidopsis thaliana 2.1e-70

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023901
        (275 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2159532 - symbol:AT5G08540 "AT5G08540" species...   713  2.1e-70   1


>TAIR|locus:2159532 [details] [associations]
            symbol:AT5G08540 "AT5G08540" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
            [GO:0009536 "plastid" evidence=IDA] EMBL:CP002688 GO:GO:0009941
            GO:GO:0009535 EMBL:AY035084 EMBL:AY051035 IPI:IPI00538884
            RefSeq:NP_568200.1 UniGene:At.50704 UniGene:At.8764 PRIDE:Q93VT6
            ProMEX:Q93VT6 EnsemblPlants:AT5G08540.1 GeneID:830754
            KEGG:ath:AT5G08540 TAIR:At5g08540 InParanoid:Q93VT6 OMA:SELPEFC
            PhylomeDB:Q93VT6 ProtClustDB:CLSN2689542 ArrayExpress:Q93VT6
            Genevestigator:Q93VT6 Uniprot:Q93VT6
        Length = 346

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 140/194 (72%), Positives = 162/194 (83%)

Query:    75 LPWIQEKALDLVEFTGSVTQAIPGPRVGQSKLPWILAVPLAYVGVSFVIAFVKTVXXXXX 134
             +PWIQEKALDLVEFTGSV+QAIPGPRVG SKLPW+LAVPLAY GV+FV AFVKTV     
Sbjct:    84 MPWIQEKALDLVEFTGSVSQAIPGPRVGSSKLPWMLAVPLAYAGVTFVTAFVKTVQKFSS 143

Query:   135 XXXXXXXLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNE 194
                    LVN+NAM+C++IDEL +K G  V+   LK L QKT F+ME++LRKYIRYALNE
Sbjct:   144 PKAQRKKLVNQNAMLCRSIDELLRKAG-TVHSSELKALEQKTEFNMEEILRKYIRYALNE 202

Query:   195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLA 254
             KPFNPDLV +LI LRKAS L+DSQ+ EILNEISRR V+EKGPVVM M G++EKGFKRKLA
Sbjct:   203 KPFNPDLVADLIHLRKASGLNDSQIPEILNEISRRIVKEKGPVVMKMQGFTEKGFKRKLA 262

Query:   255 VQALFGKVFYLSEV 268
             VQALFGK++YLSE+
Sbjct:   263 VQALFGKIYYLSEL 276


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      275       230   0.00083  113 3  11 22  0.40    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  148 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.78u 0.10s 16.88t   Elapsed:  00:00:01
  Total cpu time:  16.78u 0.10s 16.88t   Elapsed:  00:00:01
  Start:  Sat May 11 02:31:43 2013   End:  Sat May 11 02:31:44 2013

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