Query 023901
Match_columns 275
No_of_seqs 20 out of 22
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 14:42:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aq3_A Apoptosis regulator BCL 90.1 0.13 4.4E-06 43.0 2.2 68 175-242 9-78 (169)
2 2a19_A EIF-2- alpha, eukaryoti 79.8 2.2 7.5E-05 35.4 4.8 64 166-229 108-174 (175)
3 2w3l_A BCL2-XL, apoptosis regu 75.5 3.1 0.0001 33.1 4.3 20 178-197 1-20 (144)
4 3mva_O Transcription terminati 71.9 5.4 0.00018 35.1 5.3 52 167-223 21-72 (343)
5 3sp7_A BCL-2-like protein 1; a 66.7 4.1 0.00014 34.0 3.3 65 177-243 5-73 (172)
6 2nsz_A Programmed cell death p 65.8 11 0.00036 29.5 5.3 78 150-229 11-90 (129)
7 1y14_A B32, RPB4, DNA-directed 64.8 14 0.00048 32.0 6.3 58 167-224 90-148 (187)
8 2xa0_A BCL-2, apoptosis regula 63.7 6.2 0.00021 34.2 3.9 24 175-198 6-29 (207)
9 3ilc_A BCL-2-like protein 1; a 60.9 2.5 8.4E-05 36.7 0.9 62 179-242 5-110 (197)
10 3dfg_A Xcrecx, regulatory prot 60.4 10 0.00035 30.5 4.4 81 168-257 23-104 (162)
11 2k9i_A Plasmid PRN1, complete 59.0 9 0.00031 24.8 3.2 28 167-194 22-49 (55)
12 2ion_A PDCD4, programmed cell 58.3 16 0.00055 29.5 5.2 77 150-228 13-91 (152)
13 3kw6_A 26S protease regulatory 57.8 18 0.00061 25.1 4.8 51 181-236 9-59 (78)
14 2cpg_A REPA protein, transcrip 56.4 15 0.00051 23.0 3.8 27 168-194 16-42 (45)
15 3c1d_A Protein ORAA, regulator 56.0 15 0.0005 29.4 4.6 77 176-255 18-100 (159)
16 2kua_A BCL-2-like protein 10; 56.0 6.4 0.00022 32.8 2.6 50 180-242 17-66 (170)
17 2l2e_A Calcium-binding protein 52.6 45 0.0015 24.7 6.6 45 162-206 6-52 (190)
18 2d8n_A Recoverin; structural g 52.4 49 0.0017 25.1 6.9 62 163-224 15-78 (207)
19 1s1e_A KV channel interacting 49.7 46 0.0016 26.5 6.6 35 157-191 27-61 (224)
20 1r2d_A Apoptosis regulator BCL 48.8 8.8 0.0003 33.6 2.4 27 216-242 83-109 (218)
21 2krk_A 26S protease regulatory 47.3 21 0.00072 26.0 3.9 50 181-235 17-66 (86)
22 2xio_A Putative deoxyribonucle 46.8 14 0.00047 31.3 3.3 21 212-232 271-291 (301)
23 2fji_1 Exocyst complex compone 46.7 83 0.0028 28.2 8.5 63 167-234 309-373 (399)
24 3h87_C Putative uncharacterize 46.2 11 0.00038 28.3 2.3 51 166-220 14-68 (73)
25 1yz7_A Probable translation in 46.0 22 0.00075 30.3 4.4 82 167-251 18-107 (188)
26 3m66_A Mterf3, mterf domain-co 44.5 56 0.0019 27.3 6.6 54 167-224 113-170 (270)
27 3d5l_A Regulatory protein RECX 44.3 20 0.00069 30.2 3.9 95 153-255 35-147 (221)
28 1g8i_A Frequenin, neuronal cal 43.5 85 0.0029 23.1 6.8 45 162-206 6-52 (190)
29 2c35_A Human RPB4, DNA-directe 43.4 48 0.0016 27.1 5.9 16 213-228 131-146 (152)
30 2rg8_A Programmed cell death p 43.3 21 0.00072 29.1 3.7 76 149-227 13-89 (165)
31 2y6w_A BCL-2-like protein 2; a 43.3 18 0.00061 30.0 3.3 25 173-197 16-40 (177)
32 1q06_A Transcriptional regulat 43.0 85 0.0029 24.3 7.0 9 175-183 55-63 (135)
33 1u78_A TC3 transposase, transp 42.5 88 0.003 22.5 6.7 67 169-235 25-104 (141)
34 1fpw_A Yeast frequenin, calciu 41.7 88 0.003 23.0 6.7 25 163-187 7-31 (190)
35 3e3v_A Regulatory protein RECX 41.4 1E+02 0.0035 25.0 7.6 114 130-262 30-150 (177)
36 1o0l_A Apoptosis regulator BCL 40.3 21 0.00073 29.7 3.4 54 178-238 13-66 (188)
37 2ahq_A Sigma-54, RNA polymeras 40.2 5.5 0.00019 29.8 -0.2 22 214-235 38-63 (76)
38 3pt3_A E3 ubiquitin-protein li 40.1 14 0.00047 29.3 2.1 21 177-197 95-115 (118)
39 3o9x_A Uncharacterized HTH-typ 39.6 20 0.0007 26.6 2.9 36 195-234 69-104 (133)
40 2l02_A Uncharacterized protein 39.4 11 0.00036 29.2 1.3 36 188-228 13-48 (82)
41 3erp_A Putative oxidoreductase 39.0 85 0.0029 27.5 7.2 53 167-222 285-345 (353)
42 3h0g_D DNA-directed RNA polyme 38.7 85 0.0029 25.3 6.6 36 191-228 93-129 (135)
43 3fmy_A HTH-type transcriptiona 38.4 24 0.00082 23.9 2.9 39 192-234 6-44 (73)
44 2yfv_C SCM3, KLLA0F05115P; cel 38.2 15 0.00053 27.4 1.9 25 213-237 17-48 (63)
45 3ayh_A DNA-directed RNA polyme 38.0 50 0.0017 26.3 5.1 46 180-225 52-100 (136)
46 1s6c_A KV4 potassium channel-i 37.4 95 0.0032 22.8 6.2 14 164-177 36-49 (183)
47 3aji_B S6C, proteasome (prosom 37.0 41 0.0014 23.4 4.0 50 181-235 7-56 (83)
48 1bjf_A Neurocalcin delta; calc 36.0 86 0.003 23.1 5.8 29 162-190 6-34 (193)
49 3r20_A Cytidylate kinase; stru 35.5 1E+02 0.0035 26.2 6.9 80 162-242 19-136 (233)
50 2jul_A Calsenilin; EF-hand, ca 34.1 1E+02 0.0035 24.7 6.5 34 157-190 67-100 (256)
51 3bos_A Putative DNA replicatio 33.7 1.5E+02 0.0052 22.3 7.3 60 148-207 178-241 (242)
52 3n6q_A YGHZ aldo-keto reductas 33.4 90 0.0031 27.0 6.4 57 168-228 269-333 (346)
53 1tc3_C Protein (TC3 transposas 33.3 72 0.0025 18.4 5.2 29 195-224 4-32 (51)
54 3vlf_B 26S protease regulatory 33.1 62 0.0021 23.2 4.5 51 181-236 7-57 (88)
55 3qq6_A HTH-type transcriptiona 33.0 39 0.0013 23.1 3.2 36 196-232 6-41 (78)
56 1p94_A Plasmid partition prote 32.9 41 0.0014 24.9 3.6 30 166-195 46-75 (76)
57 1ais_B TFB TFIIB, protein (tra 32.2 1.2E+02 0.0041 24.0 6.5 85 165-260 68-157 (200)
58 2gzx_A Putative TATD related D 32.1 56 0.0019 26.0 4.5 34 199-232 220-254 (265)
59 1x57_A Endothelial differentia 32.0 47 0.0016 22.8 3.6 23 201-223 14-36 (91)
60 1qzm_A ATP-dependent protease 31.6 97 0.0033 23.7 5.6 69 176-244 1-85 (94)
61 3gpv_A Transcriptional regulat 31.2 1.3E+02 0.0045 23.6 6.5 28 197-224 55-84 (148)
62 1ug3_A EIF4GI, eukaryotic prot 31.0 45 0.0015 29.4 4.1 75 150-226 15-90 (339)
63 2a5y_A Apoptosis regulator CED 31.0 68 0.0023 27.6 5.1 59 175-240 28-86 (204)
64 3f2g_A Alkylmercury lyase; MER 30.8 57 0.002 28.5 4.7 59 181-247 21-79 (220)
65 3u5c_N S27A, YS15, 40S ribosom 30.7 50 0.0017 28.0 4.1 31 196-226 27-57 (151)
66 3u5i_q A0, L10E, 60S acidic ri 30.6 11 0.00036 34.3 0.0 11 66-76 297-307 (312)
67 3j20_Q 30S ribosomal protein S 30.4 51 0.0017 28.1 4.1 31 196-226 27-57 (158)
68 3iz5_s 60S acidic ribosomal pr 30.2 11 0.00037 34.3 0.0 9 25-33 238-246 (319)
69 2xzm_O RPS13E; ribosome, trans 30.1 55 0.0019 27.9 4.3 31 196-226 29-59 (153)
70 1ohu_A Apoptosis regulator CED 29.8 53 0.0018 27.4 4.2 19 179-197 12-30 (175)
71 2l01_A Uncharacterized protein 29.5 20 0.0007 27.3 1.4 36 188-228 15-51 (77)
72 2wzn_A TET3, 354AA long hypoth 29.5 55 0.0019 25.5 3.9 46 198-243 11-61 (354)
73 1ngr_A P75 low affinity neurot 29.4 77 0.0026 23.3 4.5 60 149-228 15-75 (85)
74 3gp4_A Transcriptional regulat 29.1 1.3E+02 0.0044 23.7 6.1 11 213-223 59-69 (142)
75 2dmn_A Homeobox protein TGIF2L 28.9 50 0.0017 23.8 3.4 46 138-183 7-54 (83)
76 2vof_A BCL-2-related protein A 28.7 71 0.0024 25.7 4.6 53 181-233 15-86 (157)
77 1lva_A Selenocysteine-specific 28.4 86 0.0029 26.6 5.3 56 149-207 142-206 (258)
78 3v0s_A Perakine reductase; AKR 28.3 1.5E+02 0.005 25.7 6.8 53 166-222 245-305 (337)
79 3dd4_A KV channel-interacting 28.1 1.3E+02 0.0044 23.8 6.0 60 122-191 15-74 (229)
80 3kz3_A Repressor protein CI; f 28.0 1.4E+02 0.0047 20.0 6.1 49 170-225 29-77 (80)
81 1jko_C HIN recombinase, DNA-in 27.9 72 0.0025 18.9 3.5 29 195-224 4-32 (52)
82 2ofy_A Putative XRE-family tra 27.8 1.1E+02 0.0038 20.5 4.9 58 151-219 15-74 (86)
83 1xwy_A DNAse TATD, deoxyribonu 27.6 68 0.0023 25.8 4.3 23 210-232 239-261 (264)
84 3m66_A Mterf3, mterf domain-co 27.2 71 0.0024 26.6 4.5 14 211-224 85-98 (270)
85 3ij6_A Uncharacterized metal-d 26.9 46 0.0016 28.6 3.4 24 210-233 282-305 (312)
86 1uxc_A FRUR (1-57), fructose r 26.8 1.3E+02 0.0046 20.8 5.2 51 169-224 3-57 (65)
87 3ln3_A Dihydrodiol dehydrogena 25.8 1.2E+02 0.0042 25.9 5.8 53 166-222 239-297 (324)
88 1x2n_A Homeobox protein pknox1 25.7 67 0.0023 22.1 3.5 41 143-183 12-54 (73)
89 2jml_A DNA binding domain/tran 25.4 24 0.00083 24.8 1.1 58 169-227 8-78 (81)
90 2zu6_B Programmed cell death p 25.2 96 0.0033 27.7 5.2 82 147-230 167-250 (307)
91 3eiq_C Programmed cell death p 25.1 1E+02 0.0036 28.2 5.5 76 149-226 220-297 (358)
92 1r69_A Repressor protein CI; g 25.1 1.3E+02 0.0045 18.8 5.6 48 169-219 6-59 (69)
93 3n2t_A Putative oxidoreductase 25.0 79 0.0027 27.6 4.5 58 167-230 267-332 (348)
94 3eau_A Voltage-gated potassium 24.9 1.6E+02 0.0055 25.1 6.4 54 166-222 255-317 (327)
95 3cw2_C Translation initiation 24.7 2.2E+02 0.0075 24.8 7.3 85 166-251 104-195 (266)
96 1j6o_A TATD-related deoxyribon 24.4 58 0.002 26.8 3.4 22 211-232 243-264 (268)
97 1us0_A Aldose reductase; oxido 24.1 1.4E+02 0.0048 25.5 5.9 55 164-222 229-289 (316)
98 4hv0_A AVTR; ribbon-helix-heli 24.1 75 0.0026 25.7 3.8 28 166-193 10-37 (106)
99 1jr3_D DNA polymerase III, del 23.5 1.2E+02 0.004 25.6 5.2 62 146-208 144-208 (343)
100 1pyf_A IOLS protein; beta-alph 23.5 1.4E+02 0.0047 25.4 5.6 52 167-222 246-305 (312)
101 3t76_A VANU, transcriptional r 23.0 1.4E+02 0.0047 21.6 4.9 52 165-219 25-82 (88)
102 3fdi_A Uncharacterized protein 22.9 78 0.0027 25.5 3.8 27 217-243 80-107 (201)
103 3un6_A Hypothetical protein sa 22.6 43 0.0015 28.0 2.3 75 139-214 243-320 (341)
104 2da1_A Alpha-fetoprotein enhan 22.5 76 0.0026 21.6 3.2 43 140-183 9-51 (70)
105 3b7h_A Prophage LP1 protein 11 22.4 1.4E+02 0.0047 19.3 4.4 14 205-218 53-66 (78)
106 3o3r_A Aldo-keto reductase fam 22.0 1.3E+02 0.0044 25.8 5.2 55 164-222 229-289 (316)
107 2ifo_A Inovirus; helical virus 22.0 61 0.0021 22.6 2.6 24 109-132 22-45 (46)
108 2wiu_B HTH-type transcriptiona 22.0 85 0.0029 20.9 3.3 19 205-223 17-35 (88)
109 3eus_A DNA-binding protein; st 21.6 2E+02 0.0069 19.7 7.3 55 169-227 19-80 (86)
110 2o8x_A Probable RNA polymerase 21.6 68 0.0023 20.6 2.7 25 200-224 18-42 (70)
111 2zc2_A DNAD-like replication p 21.6 1.7E+02 0.0057 20.4 4.9 60 167-226 5-65 (78)
112 3up8_A Putative 2,5-diketo-D-g 21.5 1.3E+02 0.0044 26.1 5.1 52 167-222 218-276 (298)
113 2b5a_A C.BCLI; helix-turn-heli 21.5 1.7E+02 0.0057 18.8 4.7 17 203-219 53-69 (77)
114 1ng6_A Hypothetical protein YQ 21.4 1.6E+02 0.0053 23.6 5.3 15 195-209 43-57 (148)
115 3h0g_D DNA-directed RNA polyme 21.1 1.1E+02 0.0037 24.6 4.3 47 177-224 48-95 (135)
116 3ulq_B Transcriptional regulat 21.0 1.1E+02 0.0039 22.0 4.1 31 204-235 36-73 (90)
117 3nrk_A LIC12922; NC domain, pa 21.0 1E+02 0.0034 26.7 4.3 81 137-229 71-155 (325)
118 2ppx_A AGR_C_3184P, uncharacte 20.8 53 0.0018 23.2 2.2 30 204-234 34-63 (99)
119 1s8n_A Putative antiterminator 20.6 1.2E+02 0.004 22.9 4.2 36 172-208 162-197 (205)
120 2ckz_A DNA-directed RNA polyme 20.6 46 0.0016 27.7 2.0 51 181-231 56-132 (161)
121 3ezq_A Tumor necrosis factor r 20.5 45 0.0015 26.7 1.9 75 152-231 6-96 (115)
122 1fdm_A FD coat protein, FD maj 20.4 58 0.002 23.4 2.3 23 105-134 25-47 (50)
123 2dzn_B 26S protease regulatory 20.4 48 0.0016 23.3 1.9 50 181-235 4-53 (82)
124 1p4w_A RCSB; solution structur 20.3 1.1E+02 0.0039 22.6 4.0 29 194-224 32-60 (99)
125 2xi8_A Putative transcription 20.1 1.6E+02 0.0056 18.1 5.9 48 169-219 6-60 (66)
126 1zzm_A Putative deoxyribonucle 20.0 1.2E+02 0.0042 24.2 4.4 23 210-232 235-257 (259)
No 1
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=90.13 E-value=0.13 Score=43.01 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=40.4
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCChHHHHHHH--HHHhhcCCCcHHHHHHHHHHHHhhhhhcCCeeeecc
Q 023901 175 KTGFSMEDVLRKYIRYALNEKPFNPDLVVNLI--QLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMS 242 (275)
Q Consensus 175 KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi--~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~ 242 (275)
.+||+.-+|+++||.|.|+.+-+.-....+=+ +-..-.+-..++|.+.|+.++.-+-++|....-|+.
T Consensus 9 ~~~~~~r~lv~~yi~~kL~q~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~Lr~igdele~~~~~~f~~~~ 78 (169)
T 4aq3_A 9 RTGYDNREIVMKYIHYKLSQRGYEWDAGDDVEENRTEAPEGTESEVVHLALRQAGDDFSRRYRGDFAEMS 78 (169)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCCCC-------------------CHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHcCCCcCcccccccccCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 57999999999999999999977643222111 011123456778899999999888888877655553
No 2
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=79.82 E-value=2.2 Score=35.43 Aligned_cols=64 Identities=9% Similarity=0.011 Sum_probs=45.5
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHH---HHhhcCCCcHHHHHHHHHHHHh
Q 023901 166 PPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ---LRKASMLDDSQVAEILNEISRR 229 (275)
Q Consensus 166 ~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~---Lr~as~L~d~evaeiL~E~s~R 229 (275)
.+.++.+..+.|.+.+|+..+..|++.++-.=--++....+. .=..++++|++++++|.++++|
T Consensus 108 ~g~V~~i~~~~G~~~e~~~~~~~~~l~~~~g~~~~af~~a~~~~~~l~~~~~~~~~~~~~l~~~~~~ 174 (175)
T 2a19_A 108 HSILRYCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLSIIDETVWEGIEPPSKDVLDELKNYISK 174 (175)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTHHHHHHHHSSHHHHHHHHHHCGGGGTTCCCSCHHHHHHHHHHHCC
T ss_pred eEEEEEchhhcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhCChhhhhhcCCCcHHHHHHHHHHHhc
Confidence 788899999999999999988888886654322333333331 2223567778999999998876
No 3
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=75.48 E-value=3.1 Score=33.08 Aligned_cols=20 Identities=25% Similarity=0.758 Sum_probs=16.9
Q ss_pred CChHHHHHHHHHHHhcCCCC
Q 023901 178 FSMEDVLRKYIRYALNEKPF 197 (275)
Q Consensus 178 Fs~~Ei~RKYirY~LnEr~F 197 (275)
++..++.+.||.|.|+++-+
T Consensus 1 ~~~~~L~~dyi~~~l~~~g~ 20 (144)
T 2w3l_A 1 YDNREIVMKYIHYKLSQRGY 20 (144)
T ss_dssp CCHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHhCCCCC
Confidence 46778999999999998754
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=71.90 E-value=5.4 Score=35.08 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=23.1
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 023901 167 PALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEIL 223 (275)
Q Consensus 167 gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL 223 (275)
.++.-| ..+|++.+.+.+.+=+- +.+-+=++|.|.+.++ ..|++++|++.|+
T Consensus 21 ~~v~~L-~s~Gl~~~~~~~~~p~l-~~~s~~~~~~vl~fL~---~~G~s~~~i~~iv 72 (343)
T 3mva_O 21 DLLKNL-LTMGVDIDMARKRQPGV-FHRMITNEQDLKMFLL---SKGASKEVIASII 72 (343)
T ss_dssp CHHHHH-HHHTCCHHHHHHHCGGG-GGCSCCCHHHHHHHHH---HTTCCHHHHHHHH
T ss_pred HHHHHH-HHcCCCHHHHHHhCchh-hccCcccHHHHHHHHH---HcCCCHHHHHHHH
Confidence 344444 44555555554443222 3333334444444432 4555555555444
No 5
>3sp7_A BCL-2-like protein 1; apoptosis regulator-inhibitor complex; HET: 03B; 1.40A {Homo sapiens} PDB: 2lp8_A* 2lpc_A 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 4ehr_A* 3spf_A* 2pon_B 3r85_A 2p1l_A 4a1u_A* 2yj1_A 2yq7_A 2yq6_A 3fdm_A ...
Probab=66.74 E-value=4.1 Score=34.02 Aligned_cols=65 Identities=14% Similarity=0.210 Sum_probs=45.2
Q ss_pred CCChHHHHHHHHHHHhcCCCCChHHHH--HHHHHHh--hcCCCcHHHHHHHHHHHHhhhhhcCCeeeeccc
Q 023901 177 GFSMEDVLRKYIRYALNEKPFNPDLVV--NLIQLRK--ASMLDDSQVAEILNEISRRFVREKGPVVMNMSG 243 (275)
Q Consensus 177 GFs~~Ei~RKYirY~LnEr~F~~d~Va--DLi~Lr~--as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~G 243 (275)
+++.-++.+.||.|.|.-+-|...... |. -+. ..+-.-++|...|+.++.-|-++|.+..-||..
T Consensus 5 ~~~~r~lv~dyI~yrL~~~g~~~~~~~~~~~--~~~~~~~~~~~~~v~~~Lr~~gdelE~~~~~~f~~~~~ 73 (172)
T 3sp7_A 5 SQSNRELVVDFLSYKLSQKGYSWSQFSDVEE--NRTEAPEGTESEAVKQALREAGDEFELRYRRAFSDLTS 73 (172)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCGGGTCC--------------CHHHHHHHHHHHHHHHHHHHGGGCSCHHH
T ss_pred chhhhHHHHHHHHHHHhhCCCCCcccccccc--ccCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456689999999999999988764321 11 121 233455789999999999999999887776654
No 6
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=65.81 E-value=11 Score=29.51 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=57.9
Q ss_pred HhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCC-CChHHHHHHH-HHHhhcCCCcHHHHHHHHHHH
Q 023901 150 CKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKP-FNPDLVVNLI-QLRKASMLDDSQVAEILNEIS 227 (275)
Q Consensus 150 vkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~-F~~d~VaDLi-~Lr~as~L~d~evaeiL~E~s 227 (275)
-.-|+|||..+.-..-.-.+++|. ..+-.-|++++-|-.+|..+. =+.+.+.+|+ +|-+.--+|.+|+...+.+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~--~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~ 88 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE--VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 88 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT--CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC--CCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 346899998765444455666665 346678999999999998762 4467899998 688888899999988776554
Q ss_pred Hh
Q 023901 228 RR 229 (275)
Q Consensus 228 ~R 229 (275)
..
T Consensus 89 ~~ 90 (129)
T 2nsz_A 89 NE 90 (129)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 7
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=64.80 E-value=14 Score=32.04 Aligned_cols=58 Identities=24% Similarity=0.281 Sum_probs=48.5
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023901 167 PALKGLVQKTGFSMEDVLRKYIRYALNEKPF-NPDLVVNLIQLRKASMLDDSQVAEILN 224 (275)
Q Consensus 167 gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F-~~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (275)
+.++.|--+++-.+.+||+|=+.|+-+=-.| ||+.+..+..+=...+|+..+++.|.|
T Consensus 90 ~~v~~lle~~~~~ls~v~~KTLeYl~rFsk~kn~Esa~elre~L~~~kL~efE~aqLaN 148 (187)
T 1y14_A 90 ESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGS 148 (187)
T ss_dssp HHHHHHHHHHSCSCCHHHHHHHHHHHHHCSCCSHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCCHHHHHHcCc
Confidence 3566666778889999999999999999999 999999888664558888888888776
No 8
>2xa0_A BCL-2, apoptosis regulator BCL-2; cell death; 2.70A {Homo sapiens} PDB: 1gjh_A 1ysw_A* 2o21_A* 2o22_A* 1g5m_A
Probab=63.69 E-value=6.2 Score=34.17 Aligned_cols=24 Identities=29% Similarity=0.808 Sum_probs=18.1
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCC
Q 023901 175 KTGFSMEDVLRKYIRYALNEKPFN 198 (275)
Q Consensus 175 KTGFs~~Ei~RKYirY~LnEr~F~ 198 (275)
.+||+.-|++++||.|.|.-+-+.
T Consensus 6 ~~~~~~r~lv~~~i~ykL~q~g~~ 29 (207)
T 2xa0_A 6 RTGYDNREIVMKYIHYKLSQRGYE 29 (207)
T ss_dssp ----CHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCcHHHHHHHHHHHHHhhcCCC
Confidence 469999999999999999887755
No 9
>3ilc_A BCL-2-like protein 1; apoptosis, BH3 domain, alternative splicing, cytoplasm, membrane, mitochondrion, transmembrane; 1.64A {Mus musculus} PDB: 3ihd_A 2bzw_A 1pq1_A 1pq0_A 3ihc_A 3iih_A 1af3_A 3ihf_A 3ilb_A 3iig_A 3ihe_A
Probab=60.91 E-value=2.5 Score=36.72 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHhcCCCCChHHHHH--------------------------------------------HHHHHhhcCC
Q 023901 179 SMEDVLRKYIRYALNEKPFNPDLVVN--------------------------------------------LIQLRKASML 214 (275)
Q Consensus 179 s~~Ei~RKYirY~LnEr~F~~d~VaD--------------------------------------------Li~Lr~as~L 214 (275)
+--||+-|||.|+|-.|-+.-....| ...++..+.
T Consensus 5 ~~~~~v~~~~~~kls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (197)
T 3ilc_A 5 SNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEAERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIP- 83 (197)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCTTCC-----------------------------------------------------C-
T ss_pred chHHHHHHHHHHHhhcCCCCccccCccccccccccccccccccccccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCc-
Confidence 44699999999999988776543332 111222221
Q ss_pred CcHHHHHHHHHHHHhhhhhcCCeeeecc
Q 023901 215 DDSQVAEILNEISRRFVREKGPVVMNMS 242 (275)
Q Consensus 215 ~d~evaeiL~E~s~Ri~~~~G~vmmn~~ 242 (275)
-++|+..|++++.-+=++|.+..-||.
T Consensus 84 -~~~V~~~Lr~lGdElE~~~~~~F~~m~ 110 (197)
T 3ilc_A 84 -MAAVKQALREAGDEFELRARRAFSDLT 110 (197)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 358999999999999999998765544
No 10
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=60.40 E-value=10 Score=30.52 Aligned_cols=81 Identities=21% Similarity=0.253 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHhhhhhcCCeeeeccccch
Q 023901 168 ALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASM-LDDSQVAEILNEISRRFVREKGPVVMNMSGYSE 246 (275)
Q Consensus 168 vLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~-L~d~evaeiL~E~s~Ri~~~~G~vmmn~~G~Te 246 (275)
+|+-|.. ...|..||-+| |.++-|+++.|+.+|.-=+..| |+|...|+..-.. |+-+.||+..+-. -+-+
T Consensus 23 Al~~Ls~-r~~s~~EL~~K-----L~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~--~~~~~~G~~~I~~-eL~~ 93 (162)
T 3dfg_A 23 ALGLLVH-REHSKKELNRK-----LQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRN--RASSGYGPLHIRA-ELGT 93 (162)
T ss_dssp HHHHHHH-SCCCHHHHHHH-----HHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHH--HHTTTCCHHHHHH-HHHH
T ss_pred HHHHhhc-hhhhHHHHHHH-----HHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHHccccHHHHHH-HHHH
Confidence 4554544 36777776655 6677888888888776444444 6777888776432 2335788865532 3566
Q ss_pred hhhhhHHHHHH
Q 023901 247 KGFKRKLAVQA 257 (275)
Q Consensus 247 ~G~kRK~a~~a 257 (275)
+|+..-+.-++
T Consensus 94 KGI~~~~I~~a 104 (162)
T 3dfg_A 94 HGLDSDAVSAA 104 (162)
T ss_dssp TTCCHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 66665554443
No 11
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=59.03 E-value=9 Score=24.76 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=22.8
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcC
Q 023901 167 PALKGLVQKTGFSMEDVLRKYIRYALNE 194 (275)
Q Consensus 167 gvLk~L~~KTGFs~~Ei~RKYirY~LnE 194 (275)
..|..+..+.|.|..|++|.-|+-.|.+
T Consensus 22 ~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 49 (55)
T 2k9i_A 22 DRLMEIAKEKNLTLSDVCRLAIKEYLDN 49 (55)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3466788899999999999998877654
No 12
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.27 E-value=16 Score=29.53 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=56.7
Q ss_pred HhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCC-CCChHHHHHHH-HHHhhcCCCcHHHHHHHHHHH
Q 023901 150 CKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK-PFNPDLVVNLI-QLRKASMLDDSQVAEILNEIS 227 (275)
Q Consensus 150 vkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr-~F~~d~VaDLi-~Lr~as~L~d~evaeiL~E~s 227 (275)
-.-|+|||..+.-..-.-.+++|. ..+-.-|++++-|-.+|..+ .=+.+.+.+|+ +|-+.--+|.+|+...+.++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~--~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl 90 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE--VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 90 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT--CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC--CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 356899998864433355666664 34667899999999999875 34467889988 688888899999987766544
Q ss_pred H
Q 023901 228 R 228 (275)
Q Consensus 228 ~ 228 (275)
.
T Consensus 91 ~ 91 (152)
T 2ion_A 91 N 91 (152)
T ss_dssp H
T ss_pred H
Confidence 3
No 13
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=57.75 E-value=18 Score=25.07 Aligned_cols=51 Identities=16% Similarity=0.095 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCC
Q 023901 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGP 236 (275)
Q Consensus 181 ~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~ 236 (275)
.+||+.|++=.-....+|.+.++ +..-|+|-+|+..+.+|-+...+++...
T Consensus 9 ~~Il~~~l~~~~~~~~~dl~~la-----~~t~G~SGADi~~l~~eA~~~a~~~~~~ 59 (78)
T 3kw6_A 9 LDILKIHSRKMNLTRGINLRKIA-----ELMPGASGAEVKGVCTEAGMYALRERRV 59 (78)
T ss_dssp HHHHHHHHTTSEECTTCCHHHHH-----HTCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhcCCCCCCccCHHHHH-----HHcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 47888776532222334443333 3567999999999999999998888543
No 14
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=56.40 E-value=15 Score=23.00 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=22.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcC
Q 023901 168 ALKGLVQKTGFSMEDVLRKYIRYALNE 194 (275)
Q Consensus 168 vLk~L~~KTGFs~~Ei~RKYirY~LnE 194 (275)
.|..+..++|.|..+++|+-|+..|.+
T Consensus 16 ~Ld~~a~~~g~srS~~ir~ai~~~l~~ 42 (45)
T 2cpg_A 16 NLEKMAREMGLSKSAMISVALENYKKG 42 (45)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 456788899999999999999877654
No 15
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=56.02 E-value=15 Score=29.36 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=40.1
Q ss_pred hCCChHHHHHHHHHHHhcCCC-----CChHHHHHHHH-HHhhcCCCcHHHHHHHHHHHHhhhhhcCCeeeeccccchhhh
Q 023901 176 TGFSMEDVLRKYIRYALNEKP-----FNPDLVVNLIQ-LRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGF 249 (275)
Q Consensus 176 TGFs~~Ei~RKYirY~LnEr~-----F~~d~VaDLi~-Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~G~Te~G~ 249 (275)
...|..|+-+|=.+...+-+- |+++.|+.+|+ |..---|+|...|+..-..-.+ +.||+..+- .-+.++|+
T Consensus 18 r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~--~g~G~~~I~-~eL~~KGI 94 (159)
T 3c1d_A 18 RDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSR--KGYGPARIR-QELNQKGI 94 (159)
T ss_dssp SCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH--TTCCHHHHH-HHHHHTTC
T ss_pred ccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHh--CCccHHHHH-HHHHHcCC
Confidence 456666665543322111123 77877777775 4444456777777766443222 567776542 23445555
Q ss_pred hhHHHH
Q 023901 250 KRKLAV 255 (275)
Q Consensus 250 kRK~a~ 255 (275)
..-+.-
T Consensus 95 ~~~~i~ 100 (159)
T 3c1d_A 95 SREATE 100 (159)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 554433
No 16
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=56.01 E-value=6.4 Score=32.79 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCCeeeecc
Q 023901 180 MEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMS 242 (275)
Q Consensus 180 ~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~ 242 (275)
..++++.||.|.|.++-+.. .-..+.++++|+.++..|=++|-...-++.
T Consensus 17 t~~L~~dYi~y~l~~~g~~~-------------~~~~s~~~~~Lr~v~~ele~~~~~~f~~~~ 66 (170)
T 2kua_A 17 TRRLLSDYIFFCAREPDTPE-------------PPPTSVEAALLRSVTRQIQQEHQEFFSSFC 66 (170)
T ss_dssp HHHHHHHHHHHHHCCTTSCC-------------CCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45799999999999864421 233356666666666666665555444444
No 17
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=52.61 E-value=45 Score=24.70 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=26.4
Q ss_pred CCCCchHHHHHHHHhCCChHHHHHHHHHHHhc--CCCCChHHHHHHH
Q 023901 162 DAVNPPALKGLVQKTGFSMEDVLRKYIRYALN--EKPFNPDLVVNLI 206 (275)
Q Consensus 162 da~~~gvLk~L~~KTGFs~~Ei~RKYirY~Ln--Er~F~~d~VaDLi 206 (275)
..++...++.|.+.+||+..||-+-|-.|--+ ....+.+.+..++
T Consensus 6 ~~l~~~el~~~~~~~~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l 52 (190)
T 2l2e_A 6 SKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIY 52 (190)
T ss_dssp CCSCHHHHHHHHHHHCSCSHHHHHHHHHHHHHSCCCEECHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHH
Confidence 34667777777777777777765544444433 3344554444443
No 18
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=52.36 E-value=49 Score=25.06 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=36.1
Q ss_pred CCCchHHHHHHHHhCCChHHHHHHHHHHHhc--CCCCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023901 163 AVNPPALKGLVQKTGFSMEDVLRKYIRYALN--EKPFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (275)
Q Consensus 163 a~~~gvLk~L~~KTGFs~~Ei~RKYirY~Ln--Er~F~~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (275)
.++...|+.+.+++||+..||-+=|-.|-.+ ....+.+.+..++.-....+.++.++.++.+
T Consensus 15 ~l~~~el~~~~~~~~~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~~~~f~ 78 (207)
T 2d8n_A 15 ALSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFR 78 (207)
T ss_dssp CCCHHHHHHHHHHSSCCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCTTSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 6778889999999999888876655555443 3344444444444322111244444444443
No 19
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=49.66 E-value=46 Score=26.46 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=16.7
Q ss_pred HhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHH
Q 023901 157 FQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYA 191 (275)
Q Consensus 157 fp~gRda~~~gvLk~L~~KTGFs~~Ei~RKYirY~ 191 (275)
+......+++..|+.+.+.+||+..||-+=|-.|.
T Consensus 27 l~~~~~~l~~~~l~~l~~~~~~s~~ei~~l~~~Fd 61 (224)
T 1s1e_A 27 LEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFK 61 (224)
T ss_dssp -----------CHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred cccCccCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33444456677788888888888877655444443
No 20
>1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo sapiens} SCOP: f.1.4.1 PDB: 2b48_A 1r2i_A 1r2h_A 1r2g_A 1r2e_A 1bxl_A 1lxl_A 1maz_A 3cva_X 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 2lp8_A* 2lpc_A
Probab=48.78 E-value=8.8 Score=33.63 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHhhhhhcCCeeeecc
Q 023901 216 DSQVAEILNEISRRFVREKGPVVMNMS 242 (275)
Q Consensus 216 d~evaeiL~E~s~Ri~~~~G~vmmn~~ 242 (275)
-++|++.|+.++..|-++|-..+-|+.
T Consensus 83 ~~~v~~~Lr~lgdElE~~~~~~f~~m~ 109 (218)
T 1r2d_A 83 MAAVKQALREAGDEFELRYRRAFSDLT 109 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999888766654
No 21
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=47.29 E-value=21 Score=25.96 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcC
Q 023901 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKG 235 (275)
Q Consensus 181 ~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G 235 (275)
.+||+.|++=.--...+|.+.+| +..-|+|=+|++.+.+|-+-.-+++..
T Consensus 17 ~~IL~~~l~~~~l~~dvdl~~LA-----~~T~G~SGADL~~l~~eAa~~alr~~~ 66 (86)
T 2krk_A 17 LDILKIHSRKMNLTRGINLRKIA-----ELMPGASGAEVKGVCTEAGMYALRERR 66 (86)
T ss_dssp HHHHHHHTTTSEECTTCCCHHHH-----HTCSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCcccCHHHHH-----HHcCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 57777776532222344444444 245699999999999999888888764
No 22
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Probab=46.81 E-value=14 Score=31.34 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=19.5
Q ss_pred cCCCcHHHHHHHHHHHHhhhh
Q 023901 212 SMLDDSQVAEILNEISRRFVR 232 (275)
Q Consensus 212 s~L~d~evaeiL~E~s~Ri~~ 232 (275)
.|++.+++++++.+-++|+|.
T Consensus 271 ~g~~~e~~~~~~~~Na~rlf~ 291 (301)
T 2xio_A 271 RDEDPLELANTLYNNTIKVFF 291 (301)
T ss_dssp HTCCHHHHHHHHHHHHHHHHC
T ss_pred HCcCHHHHHHHHHHHHHHHhC
Confidence 499999999999999999994
No 23
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=46.67 E-value=83 Score=28.19 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=45.5
Q ss_pred hHHHHHHHHhCCCh-HHHHHHHHHHHhcCCC-CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhc
Q 023901 167 PALKGLVQKTGFSM-EDVLRKYIRYALNEKP-FNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREK 234 (275)
Q Consensus 167 gvLk~L~~KTGFs~-~Ei~RKYirY~LnEr~-F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~ 234 (275)
.+|..|.. -+-+. ++|..-|=-+ ++.-+ .+++.|.-++++|+ .++-+++.++|... ++|.+.|
T Consensus 309 ~~l~~l~~-L~~d~~~~i~~~~~~l-~~~ypD~~~~~V~aiL~~R~--D~~~~~~k~ll~~~-~~~~~~~ 373 (399)
T 2fji_1 309 TVMEFFMD-LSCEPIDSILDIWQKY-LEVYWDSRIDLLVGILKCRK--DVSSSERKKIVQQA-TEMLHEY 373 (399)
T ss_dssp HHHHHHHH-HHHSCGGGHHHHHHHH-HTTCTTCCSHHHHHHHTTCT--TCCHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHH-hcCCcHHHHHHHHHHH-HHhCCCCCHHHHHHHHHhcc--CCCHHHHHHHHHHH-HHHHHhH
Confidence 46666666 55566 5555544444 55555 88999999999998 88899999998875 6666544
No 24
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=46.24 E-value=11 Score=28.32 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=35.2
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChH---HHHHHHHHH-hhcCCCcHHHH
Q 023901 166 PPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPD---LVVNLIQLR-KASMLDDSQVA 220 (275)
Q Consensus 166 ~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d---~VaDLi~Lr-~as~L~d~eva 220 (275)
...|+....+-|-|.++-+|..|.= -.+.|+ .++||-..- .+.+|.|.||-
T Consensus 14 ~~~L~~rAa~~G~S~~~ylr~~Le~----~a~~~~~~~~~~~l~r~~~~~~dl~D~~~m 68 (73)
T 3h87_C 14 LASLDAIAARLGLSRTEYIRRRLAQ----DAQTARVTVTAADLRRLRGAVAGLGDPELM 68 (73)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHH----HHTSCCCCCCHHHHHHHHHHSGGGGCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH----HhcCCcccccHHHHHHHHHHHcccCCHHHH
Confidence 4568888999999999877776643 333334 566665544 45599999874
No 25
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=45.99 E-value=22 Score=30.26 Aligned_cols=82 Identities=15% Similarity=0.051 Sum_probs=51.0
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHH-----HHhhcCCCcHHHHHHHHHHHHh-hhhhcCCe--e
Q 023901 167 PALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ-----LRKASMLDDSQVAEILNEISRR-FVREKGPV--V 238 (275)
Q Consensus 167 gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~-----Lr~as~L~d~evaeiL~E~s~R-i~~~~G~v--m 238 (275)
+-|+-...++|.+.+|.+++.-|++.++-.=--|+..+.+. |.. + ++ +++.+.|.++++| |--..=.| .
T Consensus 18 sil~~vAek~~~~~Eely~~i~w~L~~kyG~~ydaFk~av~~~~~vl~~-l-ip-~~~~~~L~~~i~~~l~~q~vkIra~ 94 (188)
T 1yz7_A 18 NLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKG-H-VP-DEWLPVLKEIIDNYVEVPTVTIDAE 94 (188)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTHHHHHHHHSSHHHHHHHHHHHCGGGSBT-T-BC-TTHHHHHHHHHHHHSCCCCEEEEEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHhcChHHHHH-h-CC-HHHHHHHHHHHHHhCCCCceEEEEE
Confidence 45778899999999999999999987654322333333332 222 2 55 5677777666655 43222111 3
Q ss_pred eeccccchhhhhh
Q 023901 239 MNMSGYSEKGFKR 251 (275)
Q Consensus 239 mn~~G~Te~G~kR 251 (275)
+++.-++-.|+++
T Consensus 95 ieltc~~~dGIe~ 107 (188)
T 1yz7_A 95 FEITVPKPNGVEI 107 (188)
T ss_dssp EEEECCSTTHHHH
T ss_pred EEEEeCCCchHHH
Confidence 4566677788875
No 26
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=44.53 E-value=56 Score=27.30 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=35.0
Q ss_pred hHHHHHHHHhCCChHHHHHHHHH---HHhcCCCCChHHHHHHHH-HHhhcCCCcHHHHHHHH
Q 023901 167 PALKGLVQKTGFSMEDVLRKYIR---YALNEKPFNPDLVVNLIQ-LRKASMLDDSQVAEILN 224 (275)
Q Consensus 167 gvLk~L~~KTGFs~~Ei~RKYir---Y~LnEr~F~~d~VaDLi~-Lr~as~L~d~evaeiL~ 224 (275)
+.+.-|+.+.|++.++| ++-+. ..|. .++|.+..-+. +++.+|++++||..++.
T Consensus 113 ~~v~~L~~~lG~~~~~i-~~ll~~~P~il~---~s~e~~~~~v~~l~~~~G~s~~ei~~~v~ 170 (270)
T 3m66_A 113 NRLGFFQKELELSVKKT-RDLVVRLPRLLT---GSLEPVKENMKVYRLELGFKHNEIQHMIT 170 (270)
T ss_dssp HHHHHHHHHHCCCHHHH-HHHHHHSGGGGT---SCSHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHH-HHHHHhCCccee---echHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45566767788888887 33333 2232 35566666666 67888999888876544
No 27
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=44.27 E-value=20 Score=30.15 Aligned_cols=95 Identities=17% Similarity=0.252 Sum_probs=59.4
Q ss_pred HHHHHhcCCCCCCchHHHHHHHH----------------hCCChHHHHHHHHHHHhcCCCCChHHHHHHHH-HHhhcCCC
Q 023901 153 IDELFQKGGDAVNPPALKGLVQK----------------TGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ-LRKASMLD 215 (275)
Q Consensus 153 Ldeyfp~gRda~~~gvLk~L~~K----------------TGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~-Lr~as~L~ 215 (275)
|-+|=...+..++...++.|... ...|..|+-+| |..+.|+++.|+.+|+ |..-=-||
T Consensus 35 l~~~~L~kg~el~~e~~~~i~~~~~~~~a~~~Al~~Ls~r~~S~~EL~~K-----L~~kg~~~e~i~~vl~~L~~~g~ld 109 (221)
T 3d5l_A 35 LIQFRLMKGTELDEKQIAAIATADQQAKAYSRMLDYLSYQMRTESDIVKK-----LKEIDTPEEFVEPILKKLRGQQLID 109 (221)
T ss_dssp HHHTTCCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHH-----HHHTTCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHcCCcCCCCCCHHHHHHHHHhHHHHHHHHHHHHHhccccccHHHHHHH-----HHhcCCCHHHHHHHHHHHHHcCCCC
Confidence 33443444555666666665532 34566665443 5567899999999887 66666688
Q ss_pred cHHHHHHHHHHHHhh-hhhcCCeeeeccccchhhhhhHHHH
Q 023901 216 DSQVAEILNEISRRF-VREKGPVVMNMSGYSEKGFKRKLAV 255 (275)
Q Consensus 216 d~evaeiL~E~s~Ri-~~~~G~vmmn~~G~Te~G~kRK~a~ 255 (275)
|...|+..-.. |+ .+.||+..+- .-+.++|+..-+.-
T Consensus 110 D~rfA~~~v~~--~~~~~~~G~~~I~-~eL~~KGI~~~~I~ 147 (221)
T 3d5l_A 110 DHAYAASYVRT--MINTDLKGPGIIR-QHLRQKGIGESDID 147 (221)
T ss_dssp HHHHHHHHHHH--HHHHCCCCHHHHH-HHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHH--HHHhccccHHHHH-HHHHHcCCCHHHHH
Confidence 99999876542 22 3678887652 23456666554433
No 28
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=43.47 E-value=85 Score=23.09 Aligned_cols=45 Identities=16% Similarity=0.289 Sum_probs=27.0
Q ss_pred CCCCchHHHHHHHHhCCChHHHHHHHHHHHhc--CCCCChHHHHHHH
Q 023901 162 DAVNPPALKGLVQKTGFSMEDVLRKYIRYALN--EKPFNPDLVVNLI 206 (275)
Q Consensus 162 da~~~gvLk~L~~KTGFs~~Ei~RKYirY~Ln--Er~F~~d~VaDLi 206 (275)
..+++..++.|...++|+..||-+=|-.|--+ ...-+.+.+..++
T Consensus 6 ~~l~~~~l~~l~~~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l 52 (190)
T 1g8i_A 6 SKLKPEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIY 52 (190)
T ss_dssp CSCCHHHHHHHHHTSSSCHHHHHHHHHHHHHHCTTSEEEHHHHHHHH
T ss_pred ccCCHHHHHHHHHccCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHH
Confidence 34667788888888888887765544444333 2334444444443
No 29
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=43.41 E-value=48 Score=27.09 Aligned_cols=16 Identities=25% Similarity=0.621 Sum_probs=10.7
Q ss_pred CCCcHHHHHHHHHHHH
Q 023901 213 MLDDSQVAEILNEISR 228 (275)
Q Consensus 213 ~L~d~evaeiL~E~s~ 228 (275)
.++|+++.+||.+++.
T Consensus 131 r~sdEeLe~ILd~l~k 146 (152)
T 2c35_A 131 RFEDEELQQILDDIQT 146 (152)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4667777777776665
No 30
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=43.33 E-value=21 Score=29.11 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=53.8
Q ss_pred HHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHH-HHhhcCCCcHHHHHHHHHHH
Q 023901 149 VCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ-LRKASMLDDSQVAEILNEIS 227 (275)
Q Consensus 149 LvkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~-Lr~as~L~d~evaeiL~E~s 227 (275)
+...|+|||..+....-...+++|.... -.-+++++-|..+|..+.=.-+++..|++ |. .-.|+.+|+.+.+.+.-
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~-~~~ls~~~i~~Gf~~ll 89 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTTDVEKSFDKLL 89 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHB-TTTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHH
Confidence 3457999999875544455666654322 35688999999999887666778888865 74 47889988876655443
No 31
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=43.26 E-value=18 Score=30.00 Aligned_cols=25 Identities=12% Similarity=0.380 Sum_probs=17.7
Q ss_pred HHHhCCChHHHHHHHHHHHhcCCCC
Q 023901 173 VQKTGFSMEDVLRKYIRYALNEKPF 197 (275)
Q Consensus 173 ~~KTGFs~~Ei~RKYirY~LnEr~F 197 (275)
....-.+..++++.||.|.|+++.+
T Consensus 16 ~~~~~~~~~~L~~dYi~y~l~~~g~ 40 (177)
T 2y6w_A 16 TPASAPDTRALVADFVGYKLRQKGY 40 (177)
T ss_dssp ----CCCHHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3444566789999999999997655
No 32
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=42.99 E-value=85 Score=24.29 Aligned_cols=9 Identities=33% Similarity=0.892 Sum_probs=3.8
Q ss_pred HhCCChHHH
Q 023901 175 KTGFSMEDV 183 (275)
Q Consensus 175 KTGFs~~Ei 183 (275)
+.||+.+||
T Consensus 55 ~~G~sl~eI 63 (135)
T 1q06_A 55 QVGFNLEES 63 (135)
T ss_dssp HTTCCHHHH
T ss_pred HCCCCHHHH
Confidence 344444443
No 33
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=42.45 E-value=88 Score=22.50 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=43.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhc--------CCCCChHHHHHHHHHHhhcCCCcHHHHHHHH-----HHHHhhhhhcC
Q 023901 169 LKGLVQKTGFSMEDVLRKYIRYALN--------EKPFNPDLVVNLIQLRKASMLDDSQVAEILN-----EISRRFVREKG 235 (275)
Q Consensus 169 Lk~L~~KTGFs~~Ei~RKYirY~Ln--------Er~F~~d~VaDLi~Lr~as~L~d~evaeiL~-----E~s~Ri~~~~G 235 (275)
.+++....|.|..-|.|-.-+|.-. -+..+++....++++...-.++-.++++.|+ .+-.|++++.|
T Consensus 25 ~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~~g 104 (141)
T 1u78_A 25 LHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRSG 104 (141)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHHTC
T ss_pred HHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHHCC
Confidence 5677888888776664422233211 1357888888888875555688888888775 45566666665
No 34
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=41.67 E-value=88 Score=23.00 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=15.9
Q ss_pred CCCchHHHHHHHHhCCChHHHHHHH
Q 023901 163 AVNPPALKGLVQKTGFSMEDVLRKY 187 (275)
Q Consensus 163 a~~~gvLk~L~~KTGFs~~Ei~RKY 187 (275)
.++...|+.|.+.++|+..||-+=|
T Consensus 7 ~l~~~~l~~l~~~~~~~~~~i~~~~ 31 (190)
T 1fpw_A 7 KLSKDDLTCLKQSTYFDRREIQQWH 31 (190)
T ss_dssp CSTTHHHHHHTTTCCSTHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 4566677777777777766654433
No 35
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=41.36 E-value=1e+02 Score=25.03 Aligned_cols=114 Identities=14% Similarity=0.132 Sum_probs=65.6
Q ss_pred hhcCChhhhhhhhhcc--hhhHHhhHHHHHhcCCCCCC-----chHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHH
Q 023901 130 KKFNSPKFKRKKLVNK--NAMVCKTIDELFQKGGDAVN-----PPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLV 202 (275)
Q Consensus 130 rK~tSPraKRkR~VnK--Na~LvkSLdeyfp~gRda~~-----~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~V 202 (275)
++-.|-+-=|.|+..| +...++.+=++|...+= +| ..-++.-.++.|++ +..|++.|..|-.+.+.+
T Consensus 30 ~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~-ldD~rfA~~~vr~~~~~~~~G-----~~~I~~eL~~KGI~~~~I 103 (177)
T 3e3v_A 30 YQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDL-INDKNYAESYVRTMMNTSDKG-----PKVIKLNLSKKGIDDNIA 103 (177)
T ss_dssp SSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHTTTCCHHHH
T ss_pred cccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHccccc-----HHHHHHHHHHcCCCHHHH
Confidence 3445555555666555 34455555444444332 23 22233334444565 467888899999999988
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCCeeeeccccchhhhhhHHHHHHHHHhh
Q 023901 203 VNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEKGFKRKLAVQALFGKV 262 (275)
Q Consensus 203 aDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~G~Te~G~kRK~a~~aLF~K~ 262 (275)
++.+. .+++++--+.+.+.+++-++.+.+ .+..-.++|+ .+.|-+|=
T Consensus 104 ~~al~-----~~~~~de~e~a~~l~~Kk~~~~~~-------~~~~~~~~K~-~~~L~rrG 150 (177)
T 3e3v_A 104 EDALI-----LYTDKLQVEKGVTLAEKLANRYSH-------DSYRNKQNKI-KQSLLTKG 150 (177)
T ss_dssp HHHHT-----TSCHHHHHHHHHHHHHHHHHHTTT-------SCHHHHHHHH-HHHHHHTT
T ss_pred HHHHH-----hCCchhHHHHHHHHHHHHHhhccC-------CChHHHHHHH-HHHHHHCC
Confidence 88763 356666667777788887777653 2333444554 34555443
No 36
>1o0l_A Apoptosis regulator BCL-W; helical bundle, binding groove, BH3; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=40.34 E-value=21 Score=29.66 Aligned_cols=54 Identities=7% Similarity=0.102 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCCee
Q 023901 178 FSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVV 238 (275)
Q Consensus 178 Fs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vm 238 (275)
.+..++++.||.|.|+.+.+..... ....-+.+++++.|+.++..+-++|-...
T Consensus 13 ~~~~~L~~dYi~yrl~~~g~~~~~~-------~~~~~~~~~v~~~Lr~~gdele~~~~~~f 66 (188)
T 1o0l_A 13 PDTRALVADFVGYKLRQKGYVCGAG-------PGEGPAADPLHQAMRAAGDEFETRFRRTF 66 (188)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTTCS-------GGGSCSCSTTHHHHHHHHHHHHHHCSCSH
T ss_pred HHHHHHHHHHHHHHHccCCCCCCCC-------CCCCCChhHHHHHHHHHHHHHHHHhHHHH
Confidence 4567899999999999765421100 01234456777888888877777776553
No 37
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=40.22 E-value=5.5 Score=29.84 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=17.5
Q ss_pred CCcHHHHHHHH----HHHHhhhhhcC
Q 023901 214 LDDSQVAEILN----EISRRFVREKG 235 (275)
Q Consensus 214 L~d~evaeiL~----E~s~Ri~~~~G 235 (275)
|||.+++++|+ .+|||-|-||=
T Consensus 38 lSD~~I~~~L~~~Gi~IaRRTVaKYR 63 (76)
T 2ahq_A 38 YSDQEIANILKEKGFKVARRTVAKYR 63 (76)
T ss_dssp CCHHHHHHHHTTTSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCccHHHHHHHH
Confidence 78888888886 47888888873
No 38
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=40.14 E-value=14 Score=29.33 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=16.2
Q ss_pred CCChHHHHHHHHHHHhcCCCC
Q 023901 177 GFSMEDVLRKYIRYALNEKPF 197 (275)
Q Consensus 177 GFs~~Ei~RKYirY~LnEr~F 197 (275)
-|++.|++|+-|.||++|+-|
T Consensus 95 ~Y~s~e~L~~kL~~AI~~~gf 115 (118)
T 3pt3_A 95 LYSSKQILKQKLLLAIKTKNF 115 (118)
T ss_dssp CCSSHHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHHHHHhCCc
Confidence 589999999999999999766
No 39
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=39.62 E-value=20 Score=26.62 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=26.3
Q ss_pred CCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhc
Q 023901 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREK 234 (275)
Q Consensus 195 r~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~ 234 (275)
.-++++ +|-++|+..|||-.|+|+.|. +++.-+.+|
T Consensus 69 ~~~~~~---~l~~~R~~~glsq~~la~~~g-~s~~~i~~~ 104 (133)
T 3o9x_A 69 ETVAPE---FIVKVRKKLSLTQKEASEIFG-GGVNAFSRY 104 (133)
T ss_dssp TTCCHH---HHHHHHHHTTCCHHHHHHHHC-SCTTHHHHH
T ss_pred cCCCHH---HHHHHHHHcCCCHHHHHHHHC-CCHHHHHHH
Confidence 445553 577889999999999999885 455555544
No 40
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=39.43 E-value=11 Score=29.17 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=19.4
Q ss_pred HHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 023901 188 IRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISR 228 (275)
Q Consensus 188 irY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~ 228 (275)
||.+|+|.. + -.+-.|++++||+|.|+.-+|-=.+|
T Consensus 13 VW~~L~~~~--~---~s~~el~k~t~l~d~el~lAIGWLaR 48 (82)
T 2l02_A 13 VWHALNEAD--G---ISIPELARKVNLSVESTALAVGWLAR 48 (82)
T ss_dssp HHHHHHHCC--S---BCHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHhccC--C---CCHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 455666642 1 12334566677777776666544443
No 41
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=38.95 E-value=85 Score=27.46 Aligned_cols=53 Identities=15% Similarity=0.318 Sum_probs=41.7
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCCC--------CChHHHHHHHHHHhhcCCCcHHHHHH
Q 023901 167 PALKGLVQKTGFSMEDVLRKYIRYALNEKP--------FNPDLVVNLIQLRKASMLDDSQVAEI 222 (275)
Q Consensus 167 gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~--------F~~d~VaDLi~Lr~as~L~d~evaei 222 (275)
..|++|..|.|-|..+|. |+|.|.-.. -+++-+.+-++.-...-||++|+++|
T Consensus 285 ~~l~~iA~~~g~t~aqva---L~w~l~~~~v~~vI~G~~~~~~l~enl~a~~~~~Ls~ee~~~i 345 (353)
T 3erp_A 285 RRLNELAARRGQKLSQMA---LAWVLRNDNVTSVLIGASKPSQIEDAVGMLANRRFSAAECAEI 345 (353)
T ss_dssp HHHHHHHHHTTCCHHHHH---HHHHTTTSCCCEEEECCSSHHHHHHHHHGGGGCCCCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHH---HHHHHhCCCCcEEEeCCCCHHHHHHHHHHhccCCCCHHHHHHH
Confidence 388999999999999997 667776543 36888888777654578999999876
No 42
>3h0g_D DNA-directed RNA polymerase II subunit RPB4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=38.75 E-value=85 Score=25.28 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=16.9
Q ss_pred HhcCCCCChHHHHHHHH-HHhhcCCCcHHHHHHHHHHHH
Q 023901 191 ALNEKPFNPDLVVNLIQ-LRKASMLDDSQVAEILNEISR 228 (275)
Q Consensus 191 ~LnEr~F~~d~VaDLi~-Lr~as~L~d~evaeiL~E~s~ 228 (275)
+.|=.|=|.|.+--||. |.. .++|+++.+||.+++.
T Consensus 93 L~NL~P~t~dEak~LIpsL~~--r~~de~L~~IL~~l~~ 129 (135)
T 3h0g_D 93 LGTLCCEDAEEARTLIPSLAN--KIDDQNLQGILDELST 129 (135)
T ss_dssp HHHHCCCCHHHHHHHCGGGTT--TSCSHHHHHHHHHHHH
T ss_pred HccCCCCCHHHHHHHHHHhcc--cCCHHHHHHHHHHHHH
Confidence 34444444444444444 210 1466666666665543
No 43
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=38.38 E-value=24 Score=23.94 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=26.6
Q ss_pred hcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhc
Q 023901 192 LNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREK 234 (275)
Q Consensus 192 LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~ 234 (275)
.++..|+++. |-.+|+..|||-.|+|+.+. +++.-+.+|
T Consensus 6 v~~~~~~g~~---lr~~R~~~gltq~elA~~~g-vs~~tis~~ 44 (73)
T 3fmy_A 6 VNAETVAPEF---IVKVRKKLSLTQKEASEIFG-GGVNAFSRY 44 (73)
T ss_dssp --CCCCCHHH---HHHHHHHTTCCHHHHHHHHC-SCTTHHHHH
T ss_pred hccCCCCHHH---HHHHHHHcCCCHHHHHHHhC-cCHHHHHHH
Confidence 3455666654 56789999999999999885 455444443
No 44
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=38.17 E-value=15 Score=27.40 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=20.8
Q ss_pred CCCcHHHHHH-------HHHHHHhhhhhcCCe
Q 023901 213 MLDDSQVAEI-------LNEISRRFVREKGPV 237 (275)
Q Consensus 213 ~L~d~evaei-------L~E~s~Ri~~~~G~v 237 (275)
.|||+||.|. |..+=+.|+.|||.+
T Consensus 17 ~lsdeevme~hk~adermK~~w~~Ii~KY~~~ 48 (63)
T 2yfv_C 17 KLSDEEVMERHKKADENMKRVWSQIIQKYESI 48 (63)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSG
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4889999877 777888899999973
No 45
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=38.02 E-value=50 Score=26.31 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHhcCCC---CChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 023901 180 MEDVLRKYIRYALNEKP---FNPDLVVNLIQLRKASMLDDSQVAEILNE 225 (275)
Q Consensus 180 ~~Ei~RKYirY~LnEr~---F~~d~VaDLi~Lr~as~L~d~evaeiL~E 225 (275)
...|+++.++|+-+=-. -+++.+.+++..=+..+|+..|+.-|+|-
T Consensus 52 l~ti~~e~l~YL~~~p~~~~q~~e~i~~l~~~L~~~~Ltk~E~LqivNl 100 (136)
T 3ayh_A 52 LRTIQFEILKYLSSQGNCEGLTKERFLDCIAIFNEFELTKAEILVILNN 100 (136)
T ss_dssp HHHHHHHHHHHHHTTTCCTTCCHHHHHHHHHTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccccCHHHHHHHHHHHHhcCCCHHHHHHHhcc
Confidence 34555666666544321 24666666666555667777776666664
No 46
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=37.42 E-value=95 Score=22.78 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=6.2
Q ss_pred CCchHHHHHHHHhC
Q 023901 164 VNPPALKGLVQKTG 177 (275)
Q Consensus 164 ~~~gvLk~L~~KTG 177 (275)
++...++.+.+..|
T Consensus 36 i~~~e~~~~l~~~~ 49 (183)
T 1s6c_A 36 VNEETFKQIYAQFF 49 (183)
T ss_dssp ECHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHc
Confidence 44444444444443
No 47
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=36.97 E-value=41 Score=23.40 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcC
Q 023901 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKG 235 (275)
Q Consensus 181 ~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G 235 (275)
.+||+.|++=.-....+|.+.+| +..-|+|=+|+..+.+|-+..-+++..
T Consensus 7 ~~Il~~~l~~~~~~~~vdl~~la-----~~t~G~SGADi~~l~~eA~~~a~~~~~ 56 (83)
T 3aji_B 7 RLIFSTITSKMNLSEEVDLEDYV-----ARPDKISGADINSICQESGMLAVRENR 56 (83)
T ss_dssp HHHHHHHHTTSCBCTTCCTHHHH-----TSSCCCCHHHHHHHHHHHHHGGGTSCC
T ss_pred HHHHHHHhCCCCCCcccCHHHHH-----HHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 46777665421111223333332 245699999999999999988887754
No 48
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=35.97 E-value=86 Score=23.12 Aligned_cols=29 Identities=17% Similarity=0.481 Sum_probs=20.5
Q ss_pred CCCCchHHHHHHHHhCCChHHHHHHHHHH
Q 023901 162 DAVNPPALKGLVQKTGFSMEDVLRKYIRY 190 (275)
Q Consensus 162 da~~~gvLk~L~~KTGFs~~Ei~RKYirY 190 (275)
..+....|+.|.+.|+|+..||-+=|-.|
T Consensus 6 s~l~~~~l~~l~~~~~~~~~~i~~~f~~f 34 (193)
T 1bjf_A 6 SKLRPEVMQDLLESTDFTEHEIQEWYKGF 34 (193)
T ss_dssp CCCCHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34667788888888888888775544444
No 49
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=35.50 E-value=1e+02 Score=26.20 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=50.6
Q ss_pred CCCCchHHHHHHHHhCC---ChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCC------------------------
Q 023901 162 DAVNPPALKGLVQKTGF---SMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASML------------------------ 214 (275)
Q Consensus 162 da~~~gvLk~L~~KTGF---s~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L------------------------ 214 (275)
.+...-..+.|.++.|| +..+++|..-++++.. ..+++..+.+..+-..+.+
T Consensus 19 GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g~~v~~~ir~ 97 (233)
T 3r20_A 19 GTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRA-GADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGEDVSSEIRG 97 (233)
T ss_dssp TSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHH-TCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETTEECTTGGGS
T ss_pred CCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHc-CCCchhhHHHHHHHHhCCEEEeecCCCcEEEECCeehhhhhcc
Confidence 34456677788888885 6788888887777654 3444433333333322211
Q ss_pred -----------CcHHHHHHHHHHHHhhhhhcCCeeeecc
Q 023901 215 -----------DDSQVAEILNEISRRFVREKGPVVMNMS 242 (275)
Q Consensus 215 -----------~d~evaeiL~E~s~Ri~~~~G~vmmn~~ 242 (275)
.+.+|-+.|.+.-+.+.++.|.+||+=.
T Consensus 98 ~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GR 136 (233)
T 3r20_A 98 DAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGR 136 (233)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEES
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecc
Confidence 1345668999999998887577888643
No 50
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=34.13 E-value=1e+02 Score=24.74 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=19.0
Q ss_pred HhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHH
Q 023901 157 FQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRY 190 (275)
Q Consensus 157 fp~gRda~~~gvLk~L~~KTGFs~~Ei~RKYirY 190 (275)
+.+.+..+.+..|+.+...++|+..||-+=|-.|
T Consensus 67 le~~~~~l~~e~l~~l~~~~~~s~~ei~~l~~~f 100 (256)
T 2jul_A 67 LELSTVRHQPEGLDQLQAQTKFTKKELQSLYRGF 100 (256)
T ss_dssp ---------CTHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hccccccCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4455556777889999999999988875544433
No 51
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=33.69 E-value=1.5e+02 Score=22.34 Aligned_cols=60 Identities=7% Similarity=0.122 Sum_probs=38.4
Q ss_pred hHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHH---HHHHHHHHh-cCCCCChHHHHHHHH
Q 023901 148 MVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDV---LRKYIRYAL-NEKPFNPDLVVNLIQ 207 (275)
Q Consensus 148 ~LvkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei---~RKYirY~L-nEr~F~~d~VaDLi~ 207 (275)
.+.+-|..++.+.+-.++..+++.|...++-+..++ +++-..|++ +.+.-|.+.|.++++
T Consensus 178 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 178 EKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVKEMLR 241 (242)
T ss_dssp GHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHhh
Confidence 344455555555556678888888888888776554 455666664 345566666666553
No 52
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=33.40 E-value=90 Score=27.02 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCC--------CCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 023901 168 ALKGLVQKTGFSMEDVLRKYIRYALNEK--------PFNPDLVVNLIQLRKASMLDDSQVAEILNEISR 228 (275)
Q Consensus 168 vLk~L~~KTGFs~~Ei~RKYirY~LnEr--------~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~ 228 (275)
.|++|..|.|-|..+|. |+|.|.-. .-+++-+.+-++.-...-||++|+++| +++.+
T Consensus 269 ~l~~iA~~~g~t~aqva---L~w~l~~~~v~~~I~g~~~~~~l~en~~a~~~~~Ls~e~~~~i-~~~~~ 333 (346)
T 3n6q_A 269 LLNEMAQQRGQSMAQMA---LSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQI-DQHIA 333 (346)
T ss_dssp HHHHHHHHTTCCHHHHH---HHHHTSSTTCSEEEECCSSHHHHHHHHGGGGCCCCCHHHHHHH-HHHHH
T ss_pred HHHHHHHHhCcCHHHHH---HHHHHhCCCCcEEEcCCCCHHHHHHHHhhccCCCCCHHHHHHH-HHHHh
Confidence 78899999999999997 66777643 247888888776533467999998865 44443
No 53
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=33.35 E-value=72 Score=18.44 Aligned_cols=29 Identities=3% Similarity=0.023 Sum_probs=21.4
Q ss_pred CCCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023901 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (275)
Q Consensus 195 r~F~~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (275)
+.++++.-..++.+. ..|++-.|||+.|+
T Consensus 4 ~~l~~~~~~~i~~~~-~~g~s~~~IA~~lg 32 (51)
T 1tc3_C 4 SALSDTERAQLDVMK-LLNVSLHEMSRKIS 32 (51)
T ss_dssp CCCCHHHHHHHHHHH-HTTCCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHC
Confidence 356777776777665 56899999999885
No 54
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=33.15 E-value=62 Score=23.22 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCC
Q 023901 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGP 236 (275)
Q Consensus 181 ~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~ 236 (275)
.+||+.|++=.--...+|.+.+| +..-|+|=+|++.+.+|-+-.-+++...
T Consensus 7 ~~Il~~~~~~~~~~~dvdl~~lA-----~~t~G~SGADl~~l~~eAa~~a~r~~~~ 57 (88)
T 3vlf_B 7 ANIFRIHSKSMSVERGIRWELIS-----RLCPNSTGAELRSVCTEAGMFAIRARRK 57 (88)
T ss_dssp HHHHHHHHTTSCBCSCCCHHHHH-----HTCSSCCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCCCCCccCHHHHH-----HHcCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 57887766432112223333333 3567999999999999999888888654
No 55
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=32.99 E-value=39 Score=23.10 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=25.5
Q ss_pred CCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhh
Q 023901 196 PFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVR 232 (275)
Q Consensus 196 ~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~ 232 (275)
+|+..+=..|-.+|+..|||-.|+|+.+. +++..+.
T Consensus 6 ~~~~~~~~~ik~~R~~~gltq~elA~~~g-is~~~is 41 (78)
T 3qq6_A 6 HHHHMIGQRIKQYRKEKGYSLSELAEKAG-VAKSYLS 41 (78)
T ss_dssp --CTTHHHHHHHHHHHTTCCHHHHHHHHT-CCHHHHH
T ss_pred cCCCCccHHHHHHHHHcCCCHHHHHHHHC-cCHHHHH
Confidence 45666667888999999999999999875 3443333
No 56
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=32.87 E-value=41 Score=24.90 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=26.1
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 023901 166 PPALKGLVQKTGFSMEDVLRKYIRYALNEK 195 (275)
Q Consensus 166 ~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr 195 (275)
+..||.+.-+.|=|+.||+|.+|+=.|.|.
T Consensus 46 h~rlK~~Aa~~g~Smsdvvreli~~~L~~~ 75 (76)
T 1p94_A 46 HTRFKAACARKGTSITDVVNQLVDNWLKEN 75 (76)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 467889999999999999999998877654
No 57
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=32.16 E-value=1.2e+02 Score=23.99 Aligned_cols=85 Identities=18% Similarity=0.213 Sum_probs=51.6
Q ss_pred CchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChH-----HHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCCeee
Q 023901 165 NPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPD-----LVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVM 239 (275)
Q Consensus 165 ~~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d-----~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmm 239 (275)
.+-.++++...+|.+..||-|-|. +.+++-.|+.. --.=+..+=..+||++ ++.+.-.++.+++.++.
T Consensus 68 ~p~~l~di~~~~~v~~~~i~~~~~-~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~-~v~~~A~~i~~~~~~~~----- 140 (200)
T 1ais_B 68 VPRTLDEIADIARVDKKEIGRSYR-FIARNLNLTPKKLFVKPTDYVNKFADELGLSE-KVRRRAIEILDEAYKRG----- 140 (200)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHH-HHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH-HHHHHHHHHHHHHHHTT-----
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH-HHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHcC-----
Confidence 344577888889999888877654 45566555522 2222344556788875 46665566666666543
Q ss_pred eccccchhhhhhHHHHHHHHH
Q 023901 240 NMSGYSEKGFKRKLAVQALFG 260 (275)
Q Consensus 240 n~~G~Te~G~kRK~a~~aLF~ 260 (275)
-+.|.+..|+ |+.++|-
T Consensus 141 ~~~gr~P~~i----AaAaly~ 157 (200)
T 1ais_B 141 LTSGKSPAGL----VAAALYI 157 (200)
T ss_dssp CCTTSCHHHH----HHHHHHH
T ss_pred cccCCCHHHH----HHHHHHH
Confidence 2467777764 5555543
No 58
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=32.07 E-value=56 Score=25.96 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=25.1
Q ss_pred hHHHHHHHHH-HhhcCCCcHHHHHHHHHHHHhhhh
Q 023901 199 PDLVVNLIQL-RKASMLDDSQVAEILNEISRRFVR 232 (275)
Q Consensus 199 ~d~VaDLi~L-r~as~L~d~evaeiL~E~s~Ri~~ 232 (275)
|..+...+.. ....|++++++..|+.+-++|+|.
T Consensus 220 ~~~~~~~~~~l~~~~~~~~~~~~~i~~~Na~rl~~ 254 (265)
T 2gzx_A 220 PARVTLVAEQIAELKGLSYEEVCEQTTKNAEKLFN 254 (265)
T ss_dssp GGGHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Confidence 3444444432 334799999999999999999984
No 59
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=31.98 E-value=47 Score=22.84 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHH
Q 023901 201 LVVNLIQLRKASMLDDSQVAEIL 223 (275)
Q Consensus 201 ~VaDLi~Lr~as~L~d~evaeiL 223 (275)
.-..|-++|+..|||..|+|+.+
T Consensus 14 ~~~~l~~~r~~~glsq~~lA~~~ 36 (91)
T 1x57_A 14 VGKVIQQGRQSKGLTQKDLATKI 36 (91)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Confidence 33444455555555555555544
No 60
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=31.56 E-value=97 Score=23.71 Aligned_cols=69 Identities=7% Similarity=0.298 Sum_probs=44.3
Q ss_pred hCCChHH---HHHHHHHHH------hc--CCCCChHHHHHHHHH-HhhcCCC--cHHHHHHHHHHHHhhhh--hcCCeee
Q 023901 176 TGFSMED---VLRKYIRYA------LN--EKPFNPDLVVNLIQL-RKASMLD--DSQVAEILNEISRRFVR--EKGPVVM 239 (275)
Q Consensus 176 TGFs~~E---i~RKYirY~------Ln--Er~F~~d~VaDLi~L-r~as~L~--d~evaeiL~E~s~Ri~~--~~G~vmm 239 (275)
.||+.+| |.++||.=. |. +=.|+.|++.++|.- -+-+|.- +-+++.|.+-.+.+|+. +..++.+
T Consensus 1 sGYt~~EK~~IAk~~LiPkql~~~GL~~~~~~i~d~al~~iI~~YTREaGVRnLer~i~~i~RK~a~~i~~~~~~~~v~v 80 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEI 80 (94)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHHHTTCCTTTEEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTCTTCCCEEE
T ss_pred CCCCHHHHHHHHHHhccHHHHHHhCCChhhceECHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHcCCCCCeeE
Confidence 3777765 778877543 32 334688888888862 1112322 34899999999999994 4556666
Q ss_pred ecccc
Q 023901 240 NMSGY 244 (275)
Q Consensus 240 n~~G~ 244 (275)
+...+
T Consensus 81 ~~~~l 85 (94)
T 1qzm_A 81 NGDNL 85 (94)
T ss_dssp CTTTT
T ss_pred CHHHH
Confidence 65433
No 61
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=31.20 E-value=1.3e+02 Score=23.59 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=14.5
Q ss_pred CChHHHHHHHHHH--hhcCCCcHHHHHHHH
Q 023901 197 FNPDLVVNLIQLR--KASMLDDSQVAEILN 224 (275)
Q Consensus 197 F~~d~VaDLi~Lr--~as~L~d~evaeiL~ 224 (275)
|+++.|..|-.++ +.+|++=+||+++|.
T Consensus 55 Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~ 84 (148)
T 3gpv_A 55 FNEEALKYLEMILCLKNTGMPIQKIKQFID 84 (148)
T ss_dssp BCHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5555555443222 235666666666665
No 62
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.01 E-value=45 Score=29.40 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=53.2
Q ss_pred HhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHH-HHhhcCCCcHHHHHHHHHH
Q 023901 150 CKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQ-LRKASMLDDSQVAEILNEI 226 (275)
Q Consensus 150 vkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~-Lr~as~L~d~evaeiL~E~ 226 (275)
-.-|+|||..|.-..-...+++|.-.. | .-+++++=|-.+|.-+.=+.+.+++|++ |.+..-+|.+++...+.+.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~-~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~ 90 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPS-L-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEI 90 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGG-G-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcc-c-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 346889999874433345556664322 3 7788888888888776655678888886 8888888999887766554
No 63
>2a5y_A Apoptosis regulator CED-9; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: f.1.4.1
Probab=30.99 E-value=68 Score=27.57 Aligned_cols=59 Identities=7% Similarity=0.051 Sum_probs=37.6
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCCeeee
Q 023901 175 KTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMN 240 (275)
Q Consensus 175 KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn 240 (275)
++-....++++.||.|.|..+-+.... -.+.+=.-+++++.|+.++..+=++|-...-|
T Consensus 28 ~~~~~~~~Lv~DYI~yrL~q~g~~~~~-------~~~~p~~~~~~~~~Lr~vgdelE~~~~~~f~~ 86 (204)
T 2a5y_A 28 EPRLDIEGFVVDYFTHRIRQNGMEWFG-------APGLPSGVQPEHEMMRVMGTIFEKKHAENFET 86 (204)
T ss_dssp SGGGCHHHHHHHHHHHHHHTTTCCCTT-------CBCCTTCCCHHHHHHHHHHHHHHHHTCTTHHH
T ss_pred cccHhHHHHHHHHHHHHHccCCCCccc-------CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566899999999999987663100 00111124578888888887777777655433
No 64
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=30.77 E-value=57 Score=28.54 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcCCeeeeccccchh
Q 023901 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKGPVVMNMSGYSEK 247 (275)
Q Consensus 181 ~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G~vmmn~~G~Te~ 247 (275)
..+++.-+|-+.+=+|-+.+.+| ++.|.+-++|..+|.+..--.|++-|.||- -|+|..
T Consensus 21 ~~~~~~llr~la~Grpv~~~~LA------~~~g~~~~~v~~~L~~l~~~~~D~~G~Ivg--yp~S~~ 79 (220)
T 3f2g_A 21 ADLLVPLLRELAKGRPVSRTTLA------GILDWPAERVAAVLEQATSTEYDKDGNIIG--YGLTLR 79 (220)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHH------HHHTCCHHHHHHHHHHCTTCEECTTSCEEE--SSEESS
T ss_pred hHHHHHHHHHHhcCCCCCHHHHH------HHhCcCHHHHHHHHHhCCcEEECCCCCEEE--ecCCCC
Confidence 35677777777788888888655 688999999999999998888999999854 477754
No 65
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=30.69 E-value=50 Score=28.02 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=25.5
Q ss_pred CCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 023901 196 PFNPDLVVNLIQLRKASMLDDSQVAEILNEI 226 (275)
Q Consensus 196 ~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~ 226 (275)
.+++|.|.|+|-==.--|++.+||+-+|++.
T Consensus 27 ~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 57 (151)
T 3u5c_N 27 KLSSESVIEQIVKYARKGLTPSQIGVLLRDA 57 (151)
T ss_dssp CSCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHhhhHHhcc
Confidence 3688889888765455899999999999985
No 66
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=30.63 E-value=11 Score=34.32 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=0.0
Q ss_pred hhHHHHHhcch
Q 023901 66 EVEVEVEEELP 76 (275)
Q Consensus 66 ~~e~e~e~e~~ 76 (275)
|+|||+|++|.
T Consensus 297 e~~ee~d~d~g 307 (312)
T 3u5i_q 297 EEEEESDDDMG 307 (312)
T ss_dssp -----------
T ss_pred cccccccccCC
Confidence 33444555664
No 67
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.36 E-value=51 Score=28.07 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=25.1
Q ss_pred CCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 023901 196 PFNPDLVVNLIQLRKASMLDDSQVAEILNEI 226 (275)
Q Consensus 196 ~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~ 226 (275)
.+++|.|.++|-==.--|++.+||+-||++-
T Consensus 27 ~~~~eev~~~i~klakkG~~pSqIG~~LRD~ 57 (158)
T 3j20_Q 27 EYTVEEIENLVVKLRKEGYSTAMIGTILRDQ 57 (158)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHhhHHHhcc
Confidence 3688888888754445899999999999974
No 68
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=30.22 E-value=11 Score=34.35 Aligned_cols=9 Identities=22% Similarity=0.608 Sum_probs=5.4
Q ss_pred CCCchhhhh
Q 023901 25 FSSPSLLLR 33 (275)
Q Consensus 25 ~s~p~~~~~ 33 (275)
.|.|.++.|
T Consensus 238 ~s~~~~i~~ 246 (319)
T 3iz5_s 238 AAAPHMFLN 246 (319)
T ss_dssp TTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455666666
No 69
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=30.15 E-value=55 Score=27.85 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 023901 196 PFNPDLVVNLIQLRKASMLDDSQVAEILNEI 226 (275)
Q Consensus 196 ~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~ 226 (275)
.+++|.|.++|-==.--|++.+||+-||++.
T Consensus 29 ~~~~eeVe~~I~klakkG~tpSqIG~iLRD~ 59 (153)
T 2xzm_O 29 HMTPSTVVDLSVKLAKKGLTPSQIGVILRDQ 59 (153)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHCCCCHHHhhhHHhhc
Confidence 3688888888765555899999999999973
No 70
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} SCOP: f.1.4.1 PDB: 1ty4_A
Probab=29.76 E-value=53 Score=27.37 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=16.2
Q ss_pred ChHHHHHHHHHHHhcCCCC
Q 023901 179 SMEDVLRKYIRYALNEKPF 197 (275)
Q Consensus 179 s~~Ei~RKYirY~LnEr~F 197 (275)
+..++.+.||.|.|+.+-+
T Consensus 12 ~~~~Lv~DYI~yrL~~~g~ 30 (175)
T 1ohu_A 12 DIEGFVVDYFTHRIRQNGM 30 (175)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHccCCC
Confidence 4578999999999998766
No 71
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=29.49 E-value=20 Score=27.33 Aligned_cols=36 Identities=31% Similarity=0.180 Sum_probs=21.2
Q ss_pred HHHHhcCCCCChHHHHHHHHHHhhcCC-CcHHHHHHHHHHHH
Q 023901 188 IRYALNEKPFNPDLVVNLIQLRKASML-DDSQVAEILNEISR 228 (275)
Q Consensus 188 irY~LnEr~F~~d~VaDLi~Lr~as~L-~d~evaeiL~E~s~ 228 (275)
||.+|+|.. += .+-.|++++|| +|.|+.-+|-=.+|
T Consensus 15 VW~~L~~~~--~~---s~~el~k~t~l~~d~el~lAiGWLaR 51 (77)
T 2l01_A 15 IWEALNGTE--GL---TQKQIKKATKLKADKDFFLGLGWLLR 51 (77)
T ss_dssp HHHHHTTSS--CE---EHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CC---CHHHHHHHHCCCCHHHHHHHHHHHhh
Confidence 466777742 11 23346677777 77777766654444
No 72
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A
Probab=29.47 E-value=55 Score=25.48 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhh-----hhhcCCeeeeccc
Q 023901 198 NPDLVVNLIQLRKASMLDDSQVAEILNEISRRF-----VREKGPVVMNMSG 243 (275)
Q Consensus 198 ~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri-----~~~~G~vmmn~~G 243 (275)
|-+++.+|++.-.-||-++.+|++.|.+.-+.+ ++++|+|+.-+.|
T Consensus 11 d~elL~~Lv~ipS~sg~E~~~v~~~l~~~l~~~G~~v~~D~~GNlia~~~g 61 (354)
T 2wzn_A 11 DWKLMQEIIEAPGVSGYEHLGIRDIVVDVLKEVADEVKVDKLGNVIAHFKG 61 (354)
T ss_dssp CHHHHHHHHHSCCBTTCGGGTHHHHHHHHHHTTSSEEEECTTCCEEEEECC
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHcCCEEEEeCCCeEEEEECC
Confidence 446777888888888877667777776665543 3578988876654
No 73
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=29.38 E-value=77 Score=23.30 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=35.8
Q ss_pred HHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhh-cCCCcHHHHHHHHHHH
Q 023901 149 VCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKA-SMLDDSQVAEILNEIS 227 (275)
Q Consensus 149 LvkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~a-s~L~d~evaeiL~E~s 227 (275)
||+.|| | ..=+.|.++-||+..+| +|++. + ++-+.-|+.+=.+ -|-|-+...++|+++.
T Consensus 15 l~~lL~-----g------~dW~~LA~~Lg~~~~~I--~~~~~---~----~~pt~~lL~~W~~r~~atv~~L~~aL~~ig 74 (85)
T 1ngr_A 15 VEKLLN-----G------DTWRHLAGELGYQPEHI--DSFTH---E----ACPVRALLASWGAQDSATLDALLAALRRIQ 74 (85)
T ss_dssp HHHHSC-----T------THHHHHHHHTTCCHHHH--HHHHH---S----SCHHHHHHHHGGGSTTCBHHHHHHHHHHTT
T ss_pred HHHHhC-----c------CCHHHHHHHcCCCHHHH--HHHHc---C----CCHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 577777 3 34789999999998766 22222 1 2334555555333 3455566667776655
Q ss_pred H
Q 023901 228 R 228 (275)
Q Consensus 228 ~ 228 (275)
|
T Consensus 75 R 75 (85)
T 1ngr_A 75 R 75 (85)
T ss_dssp C
T ss_pred c
Confidence 4
No 74
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=29.09 E-value=1.3e+02 Score=23.66 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=4.2
Q ss_pred CCCcHHHHHHH
Q 023901 213 MLDDSQVAEIL 223 (275)
Q Consensus 213 ~L~d~evaeiL 223 (275)
|++=+||+++|
T Consensus 59 G~sL~eIk~~l 69 (142)
T 3gp4_A 59 GLSIEALIDYL 69 (142)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 33333333333
No 75
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=28.94 E-value=50 Score=23.77 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=26.3
Q ss_pred hhhhhhcchhhHHhhHHHHHhcC--CCCCCchHHHHHHHHhCCChHHH
Q 023901 138 KRKKLVNKNAMVCKTIDELFQKG--GDAVNPPALKGLVQKTGFSMEDV 183 (275)
Q Consensus 138 KRkR~VnKNa~LvkSLdeyfp~g--Rda~~~gvLk~L~~KTGFs~~Ei 183 (275)
+|++...-...-++.|.++|... .--.+...-..|..+||.+...|
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV 54 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQI 54 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHh
Confidence 34444445555666666666553 33345556666666776666555
No 76
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=28.68 E-value=71 Score=25.69 Aligned_cols=53 Identities=11% Similarity=0.270 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCCCCh--HHHHHHH----------------HHHhhcCC-CcHHHHHHHHHHHHhhhhh
Q 023901 181 EDVLRKYIRYALNEKPFNP--DLVVNLI----------------QLRKASML-DDSQVAEILNEISRRFVRE 233 (275)
Q Consensus 181 ~Ei~RKYirY~LnEr~F~~--d~VaDLi----------------~Lr~as~L-~d~evaeiL~E~s~Ri~~~ 233 (275)
..+.+.||.|.|++..+.+ ..++..+ ++-.-+.+ +++.+.+.++++++.||++
T Consensus 15 ~~L~~Dyi~y~l~~~~~~~~ps~~~~~Lr~~~~ele~~~~~~f~~~~~~l~i~~~~~a~~~f~~Va~elF~d 86 (157)
T 2vof_A 15 HSLAEHYLQYVLQVPAFESAPSQACRVLQRVAFSVQKEVEKNLKSYLDDFHVESIDTARIIFNQVMEKEFED 86 (157)
T ss_dssp HHHHHHHHHHHHTCCCCC-CCCHHHHHHHHHHHHHHHHHHHHTHHHHTTCCCCSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhcC
Confidence 4688999999999887632 1122111 11112344 3455666777777777755
No 77
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=28.44 E-value=86 Score=26.56 Aligned_cols=56 Identities=13% Similarity=0.298 Sum_probs=36.2
Q ss_pred HHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCCC---------CChHHHHHHHH
Q 023901 149 VCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEKP---------FNPDLVVNLIQ 207 (275)
Q Consensus 149 LvkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~---------F~~d~VaDLi~ 207 (275)
+.+.|-+.|.+++ +.++.++.|..+.|.+.. .+|..++|+.++.. |.++.+..+++
T Consensus 142 ~~~~i~~~~~~~g--~~pp~~~dl~~~l~~~~~-~~~~~l~~l~~~g~lv~l~~~~~~~~~~~~~~~~ 206 (258)
T 1lva_A 142 LLKDLEDKYRVSR--WQPPSFKEVAGSFNLDPS-ELEELLHYLVREGVLVKINDEFYWHRQALGEARE 206 (258)
T ss_dssp HHHHHHHHHHHHT--TSCCBHHHHHHHTTCCHH-HHHHHHHHHHHTTSEEESSSSBEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHCC--CCCCCHHHHHhHhCCCHH-HHHHHHHHHHHCCCEEEecCCeEEcHHHHHHHHH
Confidence 4555666665433 566777888888888754 45788888887763 55555555444
No 78
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=28.31 E-value=1.5e+02 Score=25.72 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=41.4
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhcCCC--------CChHHHHHHHHHHhhcCCCcHHHHHH
Q 023901 166 PPALKGLVQKTGFSMEDVLRKYIRYALNEKP--------FNPDLVVNLIQLRKASMLDDSQVAEI 222 (275)
Q Consensus 166 ~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~--------F~~d~VaDLi~Lr~as~L~d~evaei 222 (275)
...|+.|..|.|-|..+|. |+|.|.-.. -+++-+.+-++.-. ..|+++|+++|
T Consensus 245 ~~~l~~ia~~~g~t~aqva---L~w~l~~~~v~~~I~g~~~~~~l~en~~a~~-~~L~~e~~~~l 305 (337)
T 3v0s_A 245 YYRIEALSQKHGCTPVQLA---LAWVLHQGEDVVPIPGTTKIKNLHNNVGALK-VXLTKEDLKEI 305 (337)
T ss_dssp CHHHHHHHHHTTSCHHHHH---HHHHHTTCTTBCCCCCCSCHHHHHHHHHGGG-CCCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHH---HHHHHhCCCCeEEEcCCCCHHHHHHHHHHhc-cCCCHHHHHHH
Confidence 3689999999999999997 667776542 37888888876543 47999999875
No 79
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=28.06 E-value=1.3e+02 Score=23.81 Aligned_cols=60 Identities=17% Similarity=0.335 Sum_probs=38.3
Q ss_pred hhhhhhhhhhcCChhhhhhhhhcchhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHH
Q 023901 122 VIAFVKTVKKFNSPKFKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYA 191 (275)
Q Consensus 122 viA~vRTvrK~tSPraKRkR~VnKNa~LvkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~RKYirY~ 191 (275)
++.++++.+.+.. |+. -.-+++++=+......+.+..++.|+++|+|+..||-+=|-.|.
T Consensus 15 ~~~~~~~~~~~~~--------~~~--~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~s~~ei~~l~~~F~ 74 (229)
T 3dd4_A 15 IVLFVKLLEQFGL--------IEA--GLEDSVEDELEMATVRHRPEALELLEAQSKFTKKELQILYRGFK 74 (229)
T ss_dssp HHHHHHHHHHHTC--------CC------CCHHHHHTTSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------hcc--cccCCcHHHhhhhhccCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4555666555533 222 12455555555555666688999999999999999877666664
No 80
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=28.04 E-value=1.4e+02 Score=19.98 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=27.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 023901 170 KGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNE 225 (275)
Q Consensus 170 k~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E 225 (275)
++|..+.|.|..-| -+|.-..+..+.+ .+..|=+++|.+.+++.+-|-+
T Consensus 29 ~~lA~~~gvs~~~i----s~~e~g~~~~~~~---~~~~ia~~l~v~~~~l~~~l~~ 77 (80)
T 3kz3_A 29 ESVADKMGMGQSAV----AALFNGINALNAY---NAALLAKILKVSVEEFSPSIAR 77 (80)
T ss_dssp HHHHHHTTSCHHHH----HHHHTTSSCCCHH---HHHHHHHHHTSCGGGTCHHHHH
T ss_pred HHHHHHhCcCHHHH----HHHHcCCCCCCHH---HHHHHHHHhCCCHHHHhHHHHh
Confidence 34555555543322 2333345566664 5566667889988876655543
No 81
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=27.88 E-value=72 Score=18.95 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=20.4
Q ss_pred CCCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023901 195 KPFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (275)
Q Consensus 195 r~F~~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (275)
+.++++....++.|. ..|++-.|||+.|.
T Consensus 4 ~~~~~~~~~~i~~l~-~~g~s~~~ia~~lg 32 (52)
T 1jko_C 4 RAINKHEQEQISRLL-EKGHPRQQLAIIFG 32 (52)
T ss_dssp CSSCTTHHHHHHHHH-HTTCCHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHC
Confidence 356777777777764 35788888888774
No 82
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=27.82 E-value=1.1e+02 Score=20.49 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=35.0
Q ss_pred hhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCC--CCChHHHHHHHHHHhhcCCCcHHH
Q 023901 151 KTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK--PFNPDLVVNLIQLRKASMLDDSQV 219 (275)
Q Consensus 151 kSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr--~F~~d~VaDLi~Lr~as~L~d~ev 219 (275)
+.|.+.+..-|... ..++|..++|.+.. ||.-..|-+ ..+ +..|.+|=.++|++-+++
T Consensus 15 ~~~g~~l~~~R~~~---sq~~lA~~~gis~~-----~is~~E~g~~~~p~---~~~l~~ia~~l~v~~~~l 74 (86)
T 2ofy_A 15 QRLGELLRSARGDM---SMVTVAFDAGISVE-----TLRKIETGRIATPA---FFTIAAVARVLDLSLDDV 74 (86)
T ss_dssp HHHHHHHHHHHTTS---CHHHHHHHHTCCHH-----HHHHHHTTCCSSCB---HHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHC---CHHHHHHHhCCCHH-----HHHHHHcCCCCCCC---HHHHHHHHHHhCCCHHHH
Confidence 34444444444444 56799999999854 333333433 344 455667778899886654
No 83
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12
Probab=27.63 E-value=68 Score=25.78 Aligned_cols=23 Identities=9% Similarity=-0.032 Sum_probs=20.4
Q ss_pred hhcCCCcHHHHHHHHHHHHhhhh
Q 023901 210 KASMLDDSQVAEILNEISRRFVR 232 (275)
Q Consensus 210 ~as~L~d~evaeiL~E~s~Ri~~ 232 (275)
...|++++++++++.+-++|+|.
T Consensus 239 ~~~g~~~e~~~~~~~~Na~rl~~ 261 (264)
T 1xwy_A 239 HWRGEDAAWLAATTDANVKTLFG 261 (264)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHCcCHHHHHHHHHHHHHHHhC
Confidence 34599999999999999999984
No 84
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=27.25 E-value=71 Score=26.64 Aligned_cols=14 Identities=14% Similarity=0.385 Sum_probs=7.8
Q ss_pred hcCCCcHHHHHHHH
Q 023901 211 ASMLDDSQVAEILN 224 (275)
Q Consensus 211 as~L~d~evaeiL~ 224 (275)
.+|+++++|+.++.
T Consensus 85 ~~Gls~~~i~~~l~ 98 (270)
T 3m66_A 85 SKNFSKADVAQMVR 98 (270)
T ss_dssp HTTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHH
Confidence 45666666655543
No 85
>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus}
Probab=26.88 E-value=46 Score=28.56 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=21.6
Q ss_pred hhcCCCcHHHHHHHHHHHHhhhhh
Q 023901 210 KASMLDDSQVAEILNEISRRFVRE 233 (275)
Q Consensus 210 ~as~L~d~evaeiL~E~s~Ri~~~ 233 (275)
..++|++++++.|+.+-++|+|++
T Consensus 282 ~~l~l~~~~~~~i~~~NA~rl~~~ 305 (312)
T 3ij6_A 282 NDLTISDKDKQKIFHDNYYSLIKE 305 (312)
T ss_dssp HTSSSCHHHHHHHHTHHHHHHHCC
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhC
Confidence 345999999999999999999986
No 86
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=26.83 E-value=1.3e+02 Score=20.82 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=33.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCC----CCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023901 169 LKGLVQKTGFSMEDVLRKYIRYALNEK----PFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (275)
Q Consensus 169 Lk~L~~KTGFs~~Ei~RKYirY~LnEr----~F~~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (275)
+++|.++.|.|..-|= ..||.+ ..++++..-+.+.=+.+|...+.++..|+
T Consensus 3 ~~diA~~aGVS~sTVS-----rvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~~l~ 57 (65)
T 1uxc_A 3 LDEIARLAGVSRTTAS-----YVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLR 57 (65)
T ss_dssp HHHHHHHHTSCHHHHH-----HHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-------
T ss_pred HHHHHHHHCcCHHHHH-----HHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 5789999999976554 467766 48888888777777778887777666554
No 87
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1
Probab=25.81 E-value=1.2e+02 Score=25.92 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=39.8
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023901 166 PPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (275)
Q Consensus 166 ~gvLk~L~~KTGFs~~Ei~RKYirY~LnE------r~F~~d~VaDLi~Lr~as~L~d~evaei 222 (275)
...|++|..|.|-|..+|. |+|+|.. +.-+++-+.+-++.-. .-||++|+++|
T Consensus 239 ~~~l~~ia~~~g~t~aqva---L~w~l~~~~~~I~g~~~~~~l~en~~~~~-~~L~~e~~~~l 297 (324)
T 3ln3_A 239 DPVLCDVAXXNXRSPALIA---LRYLIQRGIVPLAQSFXENEMRENLQVFG-FQLSPEDMXTL 297 (324)
T ss_dssp CHHHHHHHHHHTSCHHHHH---HHHHHHTTCEEEECCSSHHHHHHHGGGGG-CCCCHHHHHHH
T ss_pred CHHHHHHHHhhCCCHHHHH---HHHHHhCCCEEEeCCCCHHHHHHHHhhCC-CCcCHHHHHHH
Confidence 4699999999999999998 5666654 2346777777665432 47999999865
No 88
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=25.73 E-value=67 Score=22.10 Aligned_cols=41 Identities=7% Similarity=-0.001 Sum_probs=25.5
Q ss_pred hcchhhHHhhHHHHHhcC--CCCCCchHHHHHHHHhCCChHHH
Q 023901 143 VNKNAMVCKTIDELFQKG--GDAVNPPALKGLVQKTGFSMEDV 183 (275)
Q Consensus 143 VnKNa~LvkSLdeyfp~g--Rda~~~gvLk~L~~KTGFs~~Ei 183 (275)
..-...-++.|.++|... ..-.+......|..++|.+...|
T Consensus 12 ~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV 54 (73)
T 1x2n_A 12 GVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQV 54 (73)
T ss_dssp CCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 345556666677777542 33355666677777777776655
No 89
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=25.42 E-value=24 Score=24.81 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=41.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHH-Hh-----cC----CCCChHHHHHH---HHHHhhcCCCcHHHHHHHHHHH
Q 023901 169 LKGLVQKTGFSMEDVLRKYIRY-AL-----NE----KPFNPDLVVNL---IQLRKASMLDDSQVAEILNEIS 227 (275)
Q Consensus 169 Lk~L~~KTGFs~~Ei~RKYirY-~L-----nE----r~F~~d~VaDL---i~Lr~as~L~d~evaeiL~E~s 227 (275)
+.++.+.+|-+. .-+|.|-+- .| ++ |-|+++.|..| ..||+..|++-+||+++|+..+
T Consensus 8 i~e~A~~~gvs~-~tlR~ye~~~gl~~p~r~~~~g~R~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 8 IRTIARMTGIRE-ATLRAWERRYGFPRPLRSEGNNYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKTEP 78 (81)
T ss_dssp HHHHHHTTSTTH-HHHHHHHHHTCCSCCBSSSCSSSCEECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred HHHHHHHHCcCH-HHHHHHHHhCCCCCCcCCCCCCeeecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHccC
Confidence 457778888774 456788773 43 22 44888888776 4455578999999999998654
No 90
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.25 E-value=96 Score=27.66 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred hhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCC-CCChHHHHHHH-HHHhhcCCCcHHHHHHHH
Q 023901 147 AMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK-PFNPDLVVNLI-QLRKASMLDDSQVAEILN 224 (275)
Q Consensus 147 a~LvkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr-~F~~d~VaDLi-~Lr~as~L~d~evaeiL~ 224 (275)
..+-.-|+|||..+.-..-.-.+++|..- +-.-|++++-|-.+|..+ .=+.+.+.+|+ +|-+.--+|.+|+..-+.
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL~~p--~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYE 244 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCG--GGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCC--cchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_pred HHHHhh
Q 023901 225 EISRRF 230 (275)
Q Consensus 225 E~s~Ri 230 (275)
++-..+
T Consensus 245 ~vl~~l 250 (307)
T 2zu6_B 245 RIYNEI 250 (307)
T ss_dssp HHHHHH
T ss_pred HHHHhc
No 91
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=25.10 E-value=1e+02 Score=28.24 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=55.7
Q ss_pred HHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHHHHHHHHhcCC-CCChHHHHHHH-HHHhhcCCCcHHHHHHHHHH
Q 023901 149 VCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLRKYIRYALNEK-PFNPDLVVNLI-QLRKASMLDDSQVAEILNEI 226 (275)
Q Consensus 149 LvkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr-~F~~d~VaDLi-~Lr~as~L~d~evaeiL~E~ 226 (275)
+-.-|+|||..+.-..-...+++|.. .+-.-|++++=|-.+|..+ .=+.+.+.+|+ +|.+...||.+|+...+.++
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~--p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC--TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC--CcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 34568899998754444666777754 3556799999999999654 23457788888 59999999999988776654
No 92
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=25.08 E-value=1.3e+02 Score=18.83 Aligned_cols=48 Identities=19% Similarity=0.184 Sum_probs=26.0
Q ss_pred HHHHHHHhCCChHHHHH------HHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHH
Q 023901 169 LKGLVQKTGFSMEDVLR------KYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQV 219 (275)
Q Consensus 169 Lk~L~~KTGFs~~Ei~R------KYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~ev 219 (275)
|+.+..+.|+|..|+-+ .+|.-..+-+.-.+.. +..|-+++|++.+++
T Consensus 6 l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~---l~~la~~l~~~~~~l 59 (69)
T 1r69_A 6 VKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRF---LPELASALGVSVDWL 59 (69)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCSSCTT---HHHHHHHTTCCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCchH---HHHHHHHHCcCHHHH
Confidence 44455555555555443 3444445544433322 777778888876554
No 93
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0
Probab=24.98 E-value=79 Score=27.62 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=42.8
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCCCC--------ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhh
Q 023901 167 PALKGLVQKTGFSMEDVLRKYIRYALNEKPF--------NPDLVVNLIQLRKASMLDDSQVAEILNEISRRF 230 (275)
Q Consensus 167 gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F--------~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri 230 (275)
..|+.|..|.|-|..+|. |+|.|.- .. +++-+.+-++.-. .-|+++|+++ |+++.+++
T Consensus 267 ~~l~~iA~~~g~t~aqva---L~w~l~~-~v~~~I~g~~~~~~l~enl~a~~-~~L~~e~~~~-l~~~~~~~ 332 (348)
T 3n2t_A 267 DEFEKLAEKRGKSVMAFA---VRWVLDQ-GPVIALWGARKPGQVSGVKDVFG-WSLTDEEKKA-VDDILARH 332 (348)
T ss_dssp HHHHHHHHHTTCCHHHHH---HHHHHTT-TTEEEEEECSSGGGGTTHHHHSS-CCCCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHH---HHHHHHC-CCcEEEeCCCCHHHHHHHHHHhC-CCCCHHHHHH-HHHHHHHh
Confidence 478899999999999998 5666665 43 7788877776433 3799999876 45666554
No 94
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=24.93 E-value=1.6e+02 Score=25.05 Aligned_cols=54 Identities=20% Similarity=0.341 Sum_probs=39.6
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhcCCCC--------ChHHHHHHHHHHhh-cCCCcHHHHHH
Q 023901 166 PPALKGLVQKTGFSMEDVLRKYIRYALNEKPF--------NPDLVVNLIQLRKA-SMLDDSQVAEI 222 (275)
Q Consensus 166 ~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F--------~~d~VaDLi~Lr~a-s~L~d~evaei 222 (275)
...|+.|..|.|-|..+|. |+|.|.-... +++-+.+-++.-.- --||++|+++|
T Consensus 255 ~~~l~~ia~~~g~s~aqva---L~w~l~~~~v~~vI~g~~~~~~l~en~~a~~~~~~L~~e~~~~i 317 (327)
T 3eau_A 255 LKELQAIAERLGCTLPQLA---IAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVHEI 317 (327)
T ss_dssp HHHHHHHHHHHTSCHHHHH---HHHHHSSTTCCEEEECCSSHHHHHHHHGGGGGGGGCCHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHH---HHHHHhCCCCceEEeCCCCHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 3678899999999999997 6677765333 67777776653322 26999999876
No 95
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=24.67 E-value=2.2e+02 Score=24.80 Aligned_cols=85 Identities=11% Similarity=-0.003 Sum_probs=51.7
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHH----HHHhhcCCCcHHHHHHHHHHHHh-hhhhcC--Cee
Q 023901 166 PPALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLI----QLRKASMLDDSQVAEILNEISRR-FVREKG--PVV 238 (275)
Q Consensus 166 ~gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi----~Lr~as~L~d~evaeiL~E~s~R-i~~~~G--~vm 238 (275)
.+.++.++.+.||+.+|...+..||+.++-.=--+.....+ ..-..++++ +++.+.|.+++++ |--..= .-.
T Consensus 104 ~~iv~~lae~~~~~~ee~~~~i~~~l~~~~~~~~~aFk~a~~~~~~~l~~~~i~-~~~~~~l~~~~~~~~~~~~vki~~~ 182 (266)
T 3cw2_C 104 DKILELVSQKLKLSEKDAWEQVAWKLEAKYGDPITAIEKAVKEGEKILIDAGVP-EIWVKPLLEEASKHAEERKVKMSGL 182 (266)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTHHHHHTTSSCHHHHHHHHHHHCSHHHHTTTCC-STTHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ceeeeehhhhCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCchhhhhcCCC-HHHHHHHHHHHHHhCCCCceEEEEE
Confidence 67788888899999999888877888654332233333333 244556777 4555555555554 432221 123
Q ss_pred eeccccchhhhhh
Q 023901 239 MNMSGYSEKGFKR 251 (275)
Q Consensus 239 mn~~G~Te~G~kR 251 (275)
+++.-++--|+++
T Consensus 183 i~~~~~~~~Gi~~ 195 (266)
T 3cw2_C 183 ITVRTNEPLGVEK 195 (266)
T ss_dssp EEECCCCTTHHHH
T ss_pred EEEEecCCChHHH
Confidence 5566677778765
No 96
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12
Probab=24.39 E-value=58 Score=26.78 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=20.1
Q ss_pred hcCCCcHHHHHHHHHHHHhhhh
Q 023901 211 ASMLDDSQVAEILNEISRRFVR 232 (275)
Q Consensus 211 as~L~d~evaeiL~E~s~Ri~~ 232 (275)
..|++++++++|+.+-++|+|.
T Consensus 243 ~~~~~~e~~~~i~~~Na~rlf~ 264 (268)
T 1j6o_A 243 VLGVPEAKVDEATTENARRIFL 264 (268)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHH
T ss_pred HhCcCHHHHHHHHHHHHHHHhC
Confidence 3599999999999999999995
No 97
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT; 0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A* 1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A* 2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A* 2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Probab=24.15 E-value=1.4e+02 Score=25.54 Aligned_cols=55 Identities=18% Similarity=0.405 Sum_probs=41.1
Q ss_pred CCchHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023901 164 VNPPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (275)
Q Consensus 164 ~~~gvLk~L~~KTGFs~~Ei~RKYirY~LnE------r~F~~d~VaDLi~Lr~as~L~d~evaei 222 (275)
+....|+++..|.|-|..+|. |+|+|.- +.-+++-+.+-++.-. .-||++|+++|
T Consensus 229 ~~~~~l~~ia~~~g~s~aqva---L~w~l~~~~~~I~g~~~~~~l~en~~~~~-~~L~~e~~~~l 289 (316)
T 1us0_A 229 LEDPRIKAIAAKHNKTTAQVL---IRFPMQRNLVVIPKSVTPERIAENFKVFD-FELSSQDMTTL 289 (316)
T ss_dssp TTCHHHHHHHHHHTCCHHHHH---HHHHHHTTCEECCBCCCHHHHHHHHCCSS-CCCCHHHHHHH
T ss_pred ccCHHHHHHHHHhCCCHHHHH---HHHHHHCCCEEEeCCCCHHHHHHHhhhcC-CCCCHHHHHHH
Confidence 346899999999999999997 5666665 3356777777765422 46999999866
No 98
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=24.06 E-value=75 Score=25.74 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=25.3
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc
Q 023901 166 PPALKGLVQKTGFSMEDVLRKYIRYALN 193 (275)
Q Consensus 166 ~gvLk~L~~KTGFs~~Ei~RKYirY~Ln 193 (275)
...|+.|+.+-|-|...+.|++|+=+|+
T Consensus 10 Y~~LkelAe~EGvSvSav~RkLL~EyL~ 37 (106)
T 4hv0_A 10 YEFLKKKAKEEGTSVPAVIRKILKEYFG 37 (106)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 5689999999999999999999987765
No 99
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=23.50 E-value=1.2e+02 Score=25.57 Aligned_cols=62 Identities=6% Similarity=-0.093 Sum_probs=48.6
Q ss_pred hhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHHHH---HHHHHHhcCCCCChHHHHHHHHH
Q 023901 146 NAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDVLR---KYIRYALNEKPFNPDLVVNLIQL 208 (275)
Q Consensus 146 Na~LvkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~R---KYirY~LnEr~F~~d~VaDLi~L 208 (275)
...+.+-|.+.+.+.+-.++..+++.|...+|-++..+.. |..-|. .++..|.+.|.+++.-
T Consensus 144 ~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~-~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLW-PDGKLTLPRVEQAVND 208 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHC-TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhc-CCCCCCHHHHHHHHhh
Confidence 4567888889999888889999999999999999887654 665554 4567888887776543
No 100
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=23.45 E-value=1.4e+02 Score=25.39 Aligned_cols=52 Identities=13% Similarity=0.272 Sum_probs=39.0
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCC--------CCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023901 167 PALKGLVQKTGFSMEDVLRKYIRYALNEK--------PFNPDLVVNLIQLRKASMLDDSQVAEI 222 (275)
Q Consensus 167 gvLk~L~~KTGFs~~Ei~RKYirY~LnEr--------~F~~d~VaDLi~Lr~as~L~d~evaei 222 (275)
..|+.+..|.|-|..+|. |+|.|.-. .-+++-+.+-++.-. ..||++|+++|
T Consensus 246 ~~l~~ia~~~g~s~aqva---L~w~l~~~~v~~~I~g~~~~~~l~en~~a~~-~~L~~~~~~~l 305 (312)
T 1pyf_A 246 NKLAPIAEKHNVDIPHIV---LAWYLARPEIDILIPGAKRADQLIDNIKTAD-VTLSQEDISFI 305 (312)
T ss_dssp HTTHHHHHHTTSCHHHHH---HHHHHHSTTCCCBCCCCSSHHHHHHHHGGGG-CCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHH---HHHHHhCCCCeEEEeCCCCHHHHHHHHhhcc-CCCCHHHHHHH
Confidence 568889999999999998 56666553 236888888776533 37999998865
No 101
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=23.03 E-value=1.4e+02 Score=21.60 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=34.0
Q ss_pred CchHHHHHHHHhCCChHHHHH------HHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHH
Q 023901 165 NPPALKGLVQKTGFSMEDVLR------KYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQV 219 (275)
Q Consensus 165 ~~gvLk~L~~KTGFs~~Ei~R------KYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~ev 219 (275)
+..-|+.+..+.|+|..|+-+ .+|.-..+-+..+ +..|..|=++++.+-+|+
T Consensus 25 ~~~rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~~~s---~~~l~kIa~~L~v~~~~L 82 (88)
T 3t76_A 25 SYNKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNENVS---LTVLLAICEYLNCDFGDI 82 (88)
T ss_dssp ECHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCC---HHHHHHHHHHHTCCGGGT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCcC---HHHHHHHHHHHCcCHHHH
Confidence 345677777777777777654 3666666666544 455667778888887664
No 102
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=22.87 E-value=78 Score=25.47 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhhh-hcCCeeeeccc
Q 023901 217 SQVAEILNEISRRFVR-EKGPVVMNMSG 243 (275)
Q Consensus 217 ~evaeiL~E~s~Ri~~-~~G~vmmn~~G 243 (275)
.++-+.+.++-+++-. +.|++|+.-.|
T Consensus 80 ~~~~~~~~~~i~~la~~~~~~~Vi~Gr~ 107 (201)
T 3fdi_A 80 QDIAIRQFNFIRKKANEEKESFVIVGRC 107 (201)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCEEEESTT
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEECC
Confidence 3455566666666653 56888887544
No 103
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=22.60 E-value=43 Score=27.97 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=38.1
Q ss_pred hhhhhcchhhHHhhHHHHHhcCCCCCC--chHHHHHHHHhCCChHHHHHHHHH-HHhcCCCCChHHHHHHHHHHhhcCC
Q 023901 139 RKKLVNKNAMVCKTIDELFQKGGDAVN--PPALKGLVQKTGFSMEDVLRKYIR-YALNEKPFNPDLVVNLIQLRKASML 214 (275)
Q Consensus 139 RkR~VnKNa~LvkSLdeyfp~gRda~~--~gvLk~L~~KTGFs~~Ei~RKYir-Y~LnEr~F~~d~VaDLi~Lr~as~L 214 (275)
|+..+.+|..+++.+-+-+.++.+.+. +...+-+...+|.+.+ ++++++. +...-.+.+++.+..++.+=...|+
T Consensus 243 ~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 320 (341)
T 3un6_A 243 RGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQSRD-VLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHL 320 (341)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSSCHH-HHHHHHHTEECSCCCCCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCHH-HHHHHhcCCcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 556667777777766665555444333 2222555556676643 4444442 2222223455555544444444444
No 104
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=22.55 E-value=76 Score=21.59 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=25.7
Q ss_pred hhhhcchhhHHhhHHHHHhcCCCCCCchHHHHHHHHhCCChHHH
Q 023901 140 KKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQKTGFSMEDV 183 (275)
Q Consensus 140 kR~VnKNa~LvkSLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei 183 (275)
++...-...-++.|.++|..+.- .+......|..++|-+...|
T Consensus 9 r~Rt~ft~~q~~~Le~~F~~~~y-p~~~~r~~LA~~l~l~~~qV 51 (70)
T 2da1_A 9 RPRTRITDDQLRVLRQYFDINNS-PSEEQIKEMADKSGLPQKVI 51 (70)
T ss_dssp SCSCCCCHHHHHHHHHHHHHCSS-CCTTHHHHHHHHHCCCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHhCCCHHHH
Confidence 33334455556667777765533 55566667777777666555
No 105
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=22.44 E-value=1.4e+02 Score=19.29 Aligned_cols=14 Identities=0% Similarity=-0.081 Sum_probs=7.5
Q ss_pred HHHHHhhcCCCcHH
Q 023901 205 LIQLRKASMLDDSQ 218 (275)
Q Consensus 205 Li~Lr~as~L~d~e 218 (275)
+..|-.++|++-++
T Consensus 53 l~~ia~~l~~~~~~ 66 (78)
T 3b7h_A 53 IRKVCGTLGISVHD 66 (78)
T ss_dssp HHHHHHHHTCCHHH
T ss_pred HHHHHHHcCCCHHH
Confidence 44455566666444
No 106
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 3qkz_A*
Probab=22.05 E-value=1.3e+02 Score=25.77 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=39.5
Q ss_pred CCchHHHHHHHHhCCChHHHHHHHHHHHhcC------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023901 164 VNPPALKGLVQKTGFSMEDVLRKYIRYALNE------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (275)
Q Consensus 164 ~~~gvLk~L~~KTGFs~~Ei~RKYirY~LnE------r~F~~d~VaDLi~Lr~as~L~d~evaei 222 (275)
+....|+.|..|.|-|..+|. |+|.|.- +.-+++-+.+-++.- ...|+++|+++|
T Consensus 229 ~~~~~l~~ia~~~g~t~aqva---L~w~l~~~~~vi~g~~~~~~l~en~~a~-~~~L~~ee~~~l 289 (316)
T 3o3r_A 229 LEIPKIKEIAAKHKKTIAQVL---IRFHVQRNVAVIPKSVTLSHIKENIQVF-DFQLSEEDMAAI 289 (316)
T ss_dssp TTCHHHHHHHHHHTCCHHHHH---HHHHHTTTCEECCBCCSHHHHHHHTCCS-SCCCCHHHHHHH
T ss_pred hcCHHHHHHHHHhCCCHHHHH---HHHHHhCCCEEeCCCCCHHHHHHHHhhC-CCCcCHHHHHHH
Confidence 345799999999999999997 5666653 234666666665432 246999999875
No 107
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=22.05 E-value=61 Score=22.65 Aligned_cols=24 Identities=29% Similarity=0.167 Sum_probs=20.8
Q ss_pred HHHHHHHhhhhHhhhhhhhhhhhc
Q 023901 109 ILAVPLAYVGVSFVIAFVKTVKKF 132 (275)
Q Consensus 109 iLAlPLAylGiTFviA~vRTvrK~ 132 (275)
++++..+.+|+.-.|.+|+.+||.
T Consensus 22 i~~IG~aVLgV~v~i~v~k~IRra 45 (46)
T 2ifo_A 22 IAAIGGAVLTVMVGIKVYKWVRRA 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577888999999999999999873
No 108
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=21.99 E-value=85 Score=20.92 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=9.8
Q ss_pred HHHHHhhcCCCcHHHHHHH
Q 023901 205 LIQLRKASMLDDSQVAEIL 223 (275)
Q Consensus 205 Li~Lr~as~L~d~evaeiL 223 (275)
|-++|+..|+|-.|+|+.+
T Consensus 17 l~~~r~~~glsq~~lA~~~ 35 (88)
T 2wiu_B 17 MKLVRQQNGWTQSELAKKI 35 (88)
T ss_dssp HHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHh
Confidence 3345555555555555544
No 109
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=21.61 E-value=2e+02 Score=19.68 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=30.3
Q ss_pred HHHHHHHhCCChHHHHH------HHHHHHh-cCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 023901 169 LKGLVQKTGFSMEDVLR------KYIRYAL-NEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEIS 227 (275)
Q Consensus 169 Lk~L~~KTGFs~~Ei~R------KYirY~L-nEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s 227 (275)
|+.+..+.|+|..|+-. .||.-.- .++..+ +..|++|=+++|.+| ++.+.+.+..
T Consensus 19 l~~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~---~~~l~~ia~~l~v~~-~~~~l~~~~~ 80 (86)
T 3eus_A 19 LRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLD---VIEFAKWMAACEGLD-VVSEIVATIA 80 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCB---HHHHHHHHHHTTCGG-GHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCC---HHHHHHHHHHcCCCc-HHHHHHHHHH
Confidence 44455555555555433 2343333 344444 456777788999855 5566666544
No 110
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=21.60 E-value=68 Score=20.63 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHH
Q 023901 200 DLVVNLIQLRKASMLDDSQVAEILN 224 (275)
Q Consensus 200 d~VaDLi~Lr~as~L~d~evaeiL~ 224 (275)
+.-.+++.|+-..|++..|||+.|+
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~lg 42 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVCG 42 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHC
Confidence 3445677777778888888888774
No 111
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=21.58 E-value=1.7e+02 Score=20.36 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=33.1
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHh-hcCCCcHHHHHHHHHH
Q 023901 167 PALKGLVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRK-ASMLDDSQVAEILNEI 226 (275)
Q Consensus 167 gvLk~L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~-as~L~d~evaeiL~E~ 226 (275)
..++-.++..|=...-.-...|.+.+.+-.|++|.|.-+++-=. .-.++-.=|..||+.=
T Consensus 5 ~l~~~~e~~~gr~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a~~~~~~s~~Yi~~Il~~W 65 (78)
T 2zc2_A 5 ALVEDFERELGRMLSPFELEDLQKTVSDDKTDPDLVRSALREAVFNGKTNWNYIQAILRNW 65 (78)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34555666666333334456777788888888887765543211 1133444455666543
No 112
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti}
Probab=21.47 E-value=1.3e+02 Score=26.11 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=39.7
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHHhcC-------CCCChHHHHHHHHHHhhcCCCcHHHHHH
Q 023901 167 PALKGLVQKTGFSMEDVLRKYIRYALNE-------KPFNPDLVVNLIQLRKASMLDDSQVAEI 222 (275)
Q Consensus 167 gvLk~L~~KTGFs~~Ei~RKYirY~LnE-------r~F~~d~VaDLi~Lr~as~L~d~evaei 222 (275)
..|+++..|.|-|..+|. |+|.|.- +.-+++-+.+-++.-. ..||++|+++|
T Consensus 218 ~~l~~ia~~~g~s~aqva---L~w~l~~p~v~~I~g~~~~~~l~en~~a~~-~~L~~ee~~~l 276 (298)
T 3up8_A 218 PLLTEIGGRHGKTAAQVA---LRWLVQQQDVIVLSKTATEARLKENFAIFD-FALTREEMAAV 276 (298)
T ss_dssp HHHHHHHHHHTCCHHHHH---HHHHHTSTTEEEEECCCSHHHHHHHHCCSS-CCCCHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHH---HHHHHHCCCcEEEECCCCHHHHHHHHHhCC-CCCCHHHHHHH
Confidence 689999999999999998 6677765 3457777777665432 37999999865
No 113
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=21.47 E-value=1.7e+02 Score=18.82 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=10.4
Q ss_pred HHHHHHHhhcCCCcHHH
Q 023901 203 VNLIQLRKASMLDDSQV 219 (275)
Q Consensus 203 aDLi~Lr~as~L~d~ev 219 (275)
..+..|-+++|++-+++
T Consensus 53 ~~l~~la~~l~~~~~~l 69 (77)
T 2b5a_A 53 INIHKICAALDIPASTF 69 (77)
T ss_dssp HHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHhCcCHHHH
Confidence 34556666777765554
No 114
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1
Probab=21.39 E-value=1.6e+02 Score=23.61 Aligned_cols=15 Identities=7% Similarity=0.184 Sum_probs=8.8
Q ss_pred CCCChHHHHHHHHHH
Q 023901 195 KPFNPDLVVNLIQLR 209 (275)
Q Consensus 195 r~F~~d~VaDLi~Lr 209 (275)
.+++++.+.+||++-
T Consensus 43 ~~lt~~~l~~li~~~ 57 (148)
T 1ng6_A 43 DSLTEDEELTVLSRE 57 (148)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 456666666666543
No 115
>3h0g_D DNA-directed RNA polymerase II subunit RPB4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.07 E-value=1.1e+02 Score=24.65 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=40.5
Q ss_pred CCChHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023901 177 GFSMEDVLRKYIRYALNEKPF-NPDLVVNLIQLRKASMLDDSQVAEILN 224 (275)
Q Consensus 177 GFs~~Ei~RKYirY~LnEr~F-~~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (275)
+....+||+|=+.|+=+=..| |++.+..+..+-.. +|++-|++-+.|
T Consensus 48 ~~~~~~v~~kTl~Yl~~Fsk~~~~e~~~~v~~lL~~-~L~~fEia~L~N 95 (135)
T 3h0g_D 48 EIPMTDVMKKTVAYFNVFARFKTAEATYACERILGN-RFHKFERAQLGT 95 (135)
T ss_dssp CCCCTTHHHHHHHHHHTTCTTCSHHHHHHHHHHCCC-CSCHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh-cCCHHHHHHHcc
Confidence 566788999999999998898 59999988887666 999999998877
No 116
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=21.02 E-value=1.1e+02 Score=22.01 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCCcHHHHHHHH-------HHHHhhhhhcC
Q 023901 204 NLIQLRKASMLDDSQVAEILN-------EISRRFVREKG 235 (275)
Q Consensus 204 DLi~Lr~as~L~d~evaeiL~-------E~s~Ri~~~~G 235 (275)
+++.|.. -|++..|||+.|+ -.-.|+++|.|
T Consensus 36 ~Vl~l~~-~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 36 LILQEVE-KGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp HHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4445543 7889999998885 23455666655
No 117
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}
Probab=20.96 E-value=1e+02 Score=26.71 Aligned_cols=81 Identities=11% Similarity=0.215 Sum_probs=48.3
Q ss_pred hhhhhhhcchhhHHhhHHHHHhcCCCCCCchHHHHHHHH-hCCChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCC-
Q 023901 137 FKRKKLVNKNAMVCKTIDELFQKGGDAVNPPALKGLVQK-TGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQLRKASML- 214 (275)
Q Consensus 137 aKRkR~VnKNa~LvkSLdeyfp~gRda~~~gvLk~L~~K-TGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L- 214 (275)
++|....--...|-+.|++.+.... .++...++..-.+ .|.|.++ ||.+||.-|.-..+ ++.....
T Consensus 71 A~~~gi~vsd~ev~~~i~~~~~~~~-~~~~~~~~~~L~~~~g~t~~~-~~~~lr~~l~~~~l----------v~~~v~v~ 138 (325)
T 3nrk_A 71 AEEESIQVNEQRVDSEIEKRMEVMG-ITNRKQFEKTMETSSGMPFEL-WVTELPYQIKKGQL----------LQLKIAVP 138 (325)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCSCHHH-HGGGHHHHHHHHHH----------HHHTCCCC
T ss_pred HHHcCCCcCHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHH----------HHccCCCC
Confidence 3444443344556566666333322 4566666666666 8988654 66666655543222 4455678
Q ss_pred --CcHHHHHHHHHHHHh
Q 023901 215 --DDSQVAEILNEISRR 229 (275)
Q Consensus 215 --~d~evaeiL~E~s~R 229 (275)
||+||....++.-.+
T Consensus 139 ~Ptd~ei~~yy~~~~~~ 155 (325)
T 3nrk_A 139 PPNEQEIRSWYNQNKDK 155 (325)
T ss_dssp CCCHHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHhhhh
Confidence 999999888876554
No 118
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=20.81 E-value=53 Score=23.22 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=22.6
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhhhhhc
Q 023901 204 NLIQLRKASMLDDSQVAEILNEISRRFVREK 234 (275)
Q Consensus 204 DLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~ 234 (275)
.|-.+|+..|||-.|+|+.|. +++.-+.+|
T Consensus 34 ~lk~~R~~~glsq~elA~~lg-vs~~~is~~ 63 (99)
T 2ppx_A 34 RIKIIRRALKLTQEEFSARYH-IPLGTLRDW 63 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT-CCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhC-cCHHHHHHH
Confidence 567889999999999999885 455555443
No 119
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=20.62 E-value=1.2e+02 Score=22.95 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=21.2
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 023901 172 LVQKTGFSMEDVLRKYIRYALNEKPFNPDLVVNLIQL 208 (275)
Q Consensus 172 L~~KTGFs~~Ei~RKYirY~LnEr~F~~d~VaDLi~L 208 (275)
|+...|.+..|+++ ||+..-..+..+-..||+.|.+
T Consensus 162 l~~~~~~~~~~~~~-~l~~~~~~~~~s~~~iA~~l~~ 197 (205)
T 1s8n_A 162 LQTKHGMTEPDAFK-WIQRAAMDRRTTMKRVAEVVLE 197 (205)
T ss_dssp HHHHHCCCHHHHHH-HHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHH-HHHHHHHhcCCCHHHHHHHHHH
Confidence 34455888777766 5554333344666666665554
No 120
>2ckz_A DNA-directed RNA polymerase III 18 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=20.59 E-value=46 Score=27.66 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhcCCC--------------------------CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhh
Q 023901 181 EDVLRKYIRYALNEKP--------------------------FNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFV 231 (275)
Q Consensus 181 ~Ei~RKYirY~LnEr~--------------------------F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~ 231 (275)
..|+++.+.|+-+=.. .+++.+.+|+.--+..+|+..|+.-|+|-.=.-++
T Consensus 56 ~ti~~e~~~YL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~l~~~L~~~~Ltk~E~lqivNl~P~s~v 132 (161)
T 2ckz_A 56 QGITRNVVNYLSINKNFINQEDEGEERESSGAKDAEKSGISKMSDESFAELMTKLNSFKLFKAEKLQIVNQLPANMV 132 (161)
T ss_dssp HHHHHHHHHHHTC----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCccccccccccccccccccccccccccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCCHH
Confidence 3577777777765544 44677777777777788888888888776544333
No 121
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=20.47 E-value=45 Score=26.66 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=47.9
Q ss_pred hHHHHHhcCCCCCCchHHHHHHHHhCCChHHHH---HHH-------------HHHHhcCCCCChHHHHHHHHHHhhcCCC
Q 023901 152 TIDELFQKGGDAVNPPALKGLVQKTGFSMEDVL---RKY-------------IRYALNEKPFNPDLVVNLIQLRKASMLD 215 (275)
Q Consensus 152 SLdeyfp~gRda~~~gvLk~L~~KTGFs~~Ei~---RKY-------------irY~LnEr~F~~d~VaDLi~Lr~as~L~ 215 (275)
-|.+|||.=-+.+.....|.++++.|||-.+|= ..| .||- +.=..++|.+||.==+.++|
T Consensus 6 dl~~~i~~Iae~m~~~~wK~laR~LGlse~~Id~I~~d~~~d~~Eq~~qlLr~W~~---~~G~~aa~~~Li~aLr~~~l- 81 (115)
T 3ezq_A 6 DLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLRNWHQ---LHGKKEAYDTLIKDLKKANL- 81 (115)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHcCHHHHHHHHHHcCCCHhhHHHHHHcCCCChHHHHHHHHHHHHH---HhCcccHHHHHHHHHHHccc-
Confidence 367888888889999999999999999977653 333 2232 11235588888853333443
Q ss_pred cHHHHHHHHHHHHhhh
Q 023901 216 DSQVAEILNEISRRFV 231 (275)
Q Consensus 216 d~evaeiL~E~s~Ri~ 231 (275)
..+||.+.++-.+.+
T Consensus 82 -~~~Ad~Iq~~l~~~~ 96 (115)
T 3ezq_A 82 -CTLAEKIQTIILKDI 96 (115)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHH
Confidence 345555555544433
No 122
>1fdm_A FD coat protein, FD major coat protein; membrane protein, micelles, viral protein; NMR {Enterobacteria phage FD} SCOP: h.1.4.1 PDB: 1ifd_A 1ifi_A 1ifj_A 1mzt_A 2hi5_A 2cpb_A 2cps_A
Probab=20.42 E-value=58 Score=23.35 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=16.7
Q ss_pred CchhHHHHHHHhhhhHhhhhhhhhhhhcCC
Q 023901 105 KLPWILAVPLAYVGVSFVIAFVKTVKKFNS 134 (275)
Q Consensus 105 ~lPwiLAlPLAylGiTFviA~vRTvrK~tS 134 (275)
-.|-..++-.||+| .|.||||.|
T Consensus 25 ~W~vv~~vvva~ig-------IklfKKf~s 47 (50)
T 1fdm_A 25 AWAMVVVIVGATIG-------IKLFKKFTS 47 (50)
T ss_dssp TTTHHHHHHHHHHH-------HHHHHTTTT
T ss_pred hhhhhhhhhehhhh-------hhhhhhccc
Confidence 35566666777887 488999987
No 123
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=20.38 E-value=48 Score=23.28 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhhhcC
Q 023901 181 EDVLRKYIRYALNEKPFNPDLVVNLIQLRKASMLDDSQVAEILNEISRRFVREKG 235 (275)
Q Consensus 181 ~Ei~RKYirY~LnEr~F~~d~VaDLi~Lr~as~L~d~evaeiL~E~s~Ri~~~~G 235 (275)
.+||+.|++=.--...+|.+.+| +..-|+|=+|+..+.+|-+-.-+++..
T Consensus 4 ~~Il~~~l~~~~~~~~vdl~~lA-----~~t~G~SGADi~~l~~eAa~~ai~~~~ 53 (82)
T 2dzn_B 4 RLIFGTIASKMSLAPEADLDSLI-----IRNDSLSGAVIAAIMQEAGLRAVRKNR 53 (82)
T ss_dssp ----------CEECTTCCSTTTT-----TSSCCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCcCCHHHHH-----HHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 46676666421112233433333 345588888888888888887777643
No 124
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.32 E-value=1.1e+02 Score=22.59 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=20.1
Q ss_pred CCCCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 023901 194 EKPFNPDLVVNLIQLRKASMLDDSQVAEILN 224 (275)
Q Consensus 194 Er~F~~d~VaDLi~Lr~as~L~d~evaeiL~ 224 (275)
...+++... +++.| -+-|++..|||+.|+
T Consensus 32 ~~~Lt~re~-~Vl~l-~~~G~s~~EIA~~L~ 60 (99)
T 1p4w_A 32 DKRLSPKES-EVLRL-FAEGFLVTEIAKKLN 60 (99)
T ss_dssp SSSCCHHHH-HHHHH-HHHTCCHHHHHHHHT
T ss_pred cCCCCHHHH-HHHHH-HHcCCCHHHHHHHHC
Confidence 345666655 44555 368999999999884
No 125
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=20.13 E-value=1.6e+02 Score=18.11 Aligned_cols=48 Identities=10% Similarity=-0.029 Sum_probs=24.1
Q ss_pred HHHHHHHhCCChHHHHH------HHHHHHhc-CCCCChHHHHHHHHHHhhcCCCcHHH
Q 023901 169 LKGLVQKTGFSMEDVLR------KYIRYALN-EKPFNPDLVVNLIQLRKASMLDDSQV 219 (275)
Q Consensus 169 Lk~L~~KTGFs~~Ei~R------KYirY~Ln-Er~F~~d~VaDLi~Lr~as~L~d~ev 219 (275)
|+.+..+.|+|..|+-+ .+|.-..+ ++..+.+ .+..+-.++|.+-+++
T Consensus 6 l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~---~l~~i~~~l~~~~~~l 60 (66)
T 2xi8_A 6 LKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQ---LALKIAYYLNTPLEDI 60 (66)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHH---HHHHHHHHTTSCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHH---HHHHHHHHHCcCHHHH
Confidence 34444444444444332 23444444 3444444 4566667788776543
No 126
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12
Probab=20.03 E-value=1.2e+02 Score=24.21 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=20.5
Q ss_pred hhcCCCcHHHHHHHHHHHHhhhh
Q 023901 210 KASMLDDSQVAEILNEISRRFVR 232 (275)
Q Consensus 210 ~as~L~d~evaeiL~E~s~Ri~~ 232 (275)
...|++.+++++++.+-++|+|.
T Consensus 235 ~~~g~~~e~~~~~~~~Na~rl~~ 257 (259)
T 1zzm_A 235 ELRREPADEIAQALLNNTYTLFN 257 (259)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHC
T ss_pred HHHCcCHHHHHHHHHHHHHHHhC
Confidence 45699999999999999999984
Done!