Query 023903
Match_columns 275
No_of_seqs 291 out of 1668
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:29:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 2E-18 4.4E-23 145.1 12.8 82 174-263 33-114 (144)
2 TIGR01659 sex-lethal sex-letha 99.7 4.5E-16 9.9E-21 147.9 16.4 82 174-263 106-187 (346)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.7E-16 3.6E-21 148.6 12.5 83 174-264 268-350 (352)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.8E-16 6E-21 147.1 10.8 81 175-263 3-83 (352)
5 PF00076 RRM_1: RNA recognitio 99.6 8.9E-16 1.9E-20 110.4 8.8 67 178-248 1-67 (70)
6 KOG0122 Translation initiation 99.6 1.8E-15 3.9E-20 135.6 10.9 82 174-263 188-269 (270)
7 KOG0121 Nuclear cap-binding pr 99.6 8.9E-16 1.9E-20 126.0 7.0 80 174-261 35-114 (153)
8 TIGR01659 sex-lethal sex-letha 99.6 6.1E-15 1.3E-19 140.2 11.8 83 175-263 193-275 (346)
9 KOG0107 Alternative splicing f 99.6 9.1E-15 2E-19 125.5 8.7 77 175-264 10-86 (195)
10 KOG0113 U1 small nuclear ribon 99.5 7.7E-14 1.7E-18 128.1 11.2 84 172-263 98-181 (335)
11 KOG0105 Alternative splicing f 99.5 2.8E-14 6.1E-19 123.7 7.5 77 175-262 6-82 (241)
12 PF14259 RRM_6: RNA recognitio 99.5 1.4E-13 3E-18 100.1 9.1 67 178-248 1-67 (70)
13 PLN03120 nucleic acid binding 99.5 1.2E-13 2.6E-18 126.0 10.4 76 175-262 4-79 (260)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.4E-13 3E-18 135.2 11.8 81 174-262 294-374 (509)
15 TIGR01622 SF-CC1 splicing fact 99.5 1.3E-13 2.7E-18 133.9 10.7 80 175-262 186-265 (457)
16 TIGR01645 half-pint poly-U bin 99.5 1.2E-13 2.6E-18 139.2 10.8 81 175-263 204-284 (612)
17 TIGR01645 half-pint poly-U bin 99.5 9.9E-14 2.1E-18 139.9 10.2 81 174-262 106-186 (612)
18 TIGR01628 PABP-1234 polyadenyl 99.5 1.6E-13 3.5E-18 137.1 10.5 78 177-262 2-79 (562)
19 KOG0114 Predicted RNA-binding 99.5 2.7E-13 5.8E-18 107.8 9.3 84 167-261 10-93 (124)
20 KOG4207 Predicted splicing fac 99.5 1.3E-13 2.8E-18 121.4 7.6 81 174-262 12-92 (256)
21 smart00362 RRM_2 RNA recogniti 99.5 4.7E-13 1E-17 94.5 9.0 71 177-257 1-71 (72)
22 TIGR01648 hnRNP-R-Q heterogene 99.5 3.5E-13 7.5E-18 135.5 11.1 79 174-260 57-135 (578)
23 TIGR01628 PABP-1234 polyadenyl 99.5 3.4E-13 7.5E-18 134.7 11.0 81 174-263 284-364 (562)
24 COG0724 RNA-binding proteins ( 99.4 5E-13 1.1E-17 115.7 10.0 79 175-261 115-193 (306)
25 TIGR01622 SF-CC1 splicing fact 99.4 4.6E-13 9.9E-18 130.0 10.5 81 174-263 88-168 (457)
26 KOG0125 Ataxin 2-binding prote 99.4 3.4E-13 7.3E-18 125.3 8.6 79 174-262 95-173 (376)
27 KOG0149 Predicted RNA-binding 99.4 2.8E-13 6.1E-18 121.0 6.9 71 175-249 12-82 (247)
28 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1E-12 2.3E-17 129.6 11.0 77 174-263 274-351 (481)
29 smart00360 RRM RNA recognition 99.4 1.4E-12 3.1E-17 91.5 8.5 71 180-258 1-71 (71)
30 TIGR01648 hnRNP-R-Q heterogene 99.4 1.3E-12 2.9E-17 131.2 11.0 74 174-263 232-307 (578)
31 KOG0148 Apoptosis-promoting RN 99.4 1E-12 2.2E-17 119.5 9.1 76 174-263 163-238 (321)
32 KOG0145 RNA-binding protein EL 99.4 8.3E-13 1.8E-17 119.7 8.4 81 175-263 41-121 (360)
33 cd00590 RRM RRM (RNA recogniti 99.4 4.2E-12 9E-17 90.0 9.9 74 177-259 1-74 (74)
34 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.7E-12 3.7E-17 128.1 10.3 85 174-263 393-480 (481)
35 PLN03213 repressor of silencin 99.4 1.3E-12 2.9E-17 126.7 9.2 76 175-262 10-87 (759)
36 KOG0111 Cyclophilin-type pepti 99.4 3.6E-13 7.8E-18 119.6 4.8 87 174-268 9-95 (298)
37 KOG0144 RNA-binding protein CU 99.4 2.3E-12 4.9E-17 123.4 10.3 85 174-264 33-118 (510)
38 PLN03121 nucleic acid binding 99.4 2.8E-12 6E-17 115.7 9.8 75 175-261 5-79 (243)
39 KOG0126 Predicted RNA-binding 99.4 1.1E-13 2.4E-18 119.6 0.3 80 174-261 34-113 (219)
40 KOG0144 RNA-binding protein CU 99.3 1.3E-12 2.8E-17 124.9 5.9 85 175-266 124-209 (510)
41 KOG0108 mRNA cleavage and poly 99.3 3.8E-12 8.2E-17 124.0 8.1 82 176-265 19-100 (435)
42 KOG4206 Spliceosomal protein s 99.3 5E-12 1.1E-16 112.3 7.9 78 175-263 9-90 (221)
43 KOG0148 Apoptosis-promoting RN 99.3 9.5E-12 2.1E-16 113.3 8.2 81 175-263 62-142 (321)
44 KOG0131 Splicing factor 3b, su 99.3 5.4E-12 1.2E-16 109.1 6.2 82 172-261 6-87 (203)
45 KOG0130 RNA-binding protein RB 99.3 9.5E-12 2.1E-16 103.3 7.3 83 175-265 72-154 (170)
46 KOG0117 Heterogeneous nuclear 99.3 2.2E-11 4.8E-16 117.0 10.6 80 175-261 83-162 (506)
47 KOG0117 Heterogeneous nuclear 99.3 9.5E-12 2.1E-16 119.5 7.6 73 175-263 259-331 (506)
48 KOG0145 RNA-binding protein EL 99.2 3.8E-11 8.3E-16 109.0 9.6 80 175-262 278-357 (360)
49 PF13893 RRM_5: RNA recognitio 99.2 5E-11 1.1E-15 83.7 8.0 56 192-260 1-56 (56)
50 KOG0127 Nucleolar protein fibr 99.2 2.6E-11 5.6E-16 119.0 8.1 80 175-263 117-196 (678)
51 KOG0109 RNA-binding protein LA 99.2 1.3E-11 2.8E-16 113.4 5.4 72 176-263 3-74 (346)
52 KOG0127 Nucleolar protein fibr 99.1 1.2E-10 2.6E-15 114.3 8.4 80 175-262 292-377 (678)
53 KOG0132 RNA polymerase II C-te 99.1 1.4E-10 3E-15 117.4 7.7 80 174-267 420-499 (894)
54 KOG0415 Predicted peptidyl pro 99.1 1.4E-10 3.1E-15 109.0 6.8 81 174-262 238-318 (479)
55 smart00361 RRM_1 RNA recogniti 99.1 4.5E-10 9.7E-15 82.8 8.0 63 189-257 2-69 (70)
56 KOG1457 RNA binding protein (c 99.1 1.2E-09 2.5E-14 97.6 11.1 88 172-263 31-118 (284)
57 KOG0147 Transcriptional coacti 99.1 2.2E-10 4.8E-15 112.4 6.3 78 177-262 280-357 (549)
58 KOG0146 RNA-binding protein ET 99.0 3.9E-10 8.4E-15 102.9 6.7 85 174-264 18-102 (371)
59 KOG4212 RNA-binding protein hn 99.0 1.3E-09 2.7E-14 105.0 10.3 73 175-260 536-608 (608)
60 KOG0124 Polypyrimidine tract-b 99.0 2.3E-10 5E-15 108.0 4.8 77 175-259 113-189 (544)
61 KOG0146 RNA-binding protein ET 99.0 4.6E-10 1E-14 102.4 6.0 82 174-263 284-365 (371)
62 TIGR01642 U2AF_lg U2 snRNP aux 99.0 1.3E-09 2.9E-14 107.1 9.5 84 174-262 408-501 (509)
63 KOG0109 RNA-binding protein LA 99.0 6.8E-10 1.5E-14 102.2 6.0 74 174-263 77-150 (346)
64 KOG4212 RNA-binding protein hn 99.0 1.6E-09 3.5E-14 104.2 8.2 77 175-260 44-121 (608)
65 KOG0131 Splicing factor 3b, su 98.9 1.1E-09 2.3E-14 95.0 5.8 85 175-267 96-181 (203)
66 KOG0110 RNA-binding protein (R 98.9 8E-10 1.7E-14 111.2 5.0 82 174-263 612-693 (725)
67 KOG4208 Nucleolar RNA-binding 98.9 2.4E-09 5.3E-14 94.3 7.4 80 175-262 49-129 (214)
68 KOG0123 Polyadenylate-binding 98.9 3.9E-09 8.4E-14 101.5 8.6 74 178-262 79-152 (369)
69 KOG0153 Predicted RNA-binding 98.8 7.5E-09 1.6E-13 97.2 8.1 76 174-263 227-303 (377)
70 KOG0110 RNA-binding protein (R 98.8 9.9E-09 2.2E-13 103.4 8.1 80 177-261 517-596 (725)
71 KOG0533 RRM motif-containing p 98.7 2.7E-08 5.9E-13 90.4 8.0 80 175-263 83-162 (243)
72 KOG1457 RNA binding protein (c 98.7 9.8E-09 2.1E-13 91.7 4.1 68 174-248 209-276 (284)
73 KOG0123 Polyadenylate-binding 98.7 7.9E-08 1.7E-12 92.5 8.5 74 176-263 2-75 (369)
74 KOG4206 Spliceosomal protein s 98.6 8.8E-08 1.9E-12 85.4 7.8 77 174-262 145-221 (221)
75 KOG0106 Alternative splicing f 98.6 4.6E-08 9.9E-13 87.4 5.1 72 176-263 2-73 (216)
76 KOG4209 Splicing factor RNPS1, 98.6 9.3E-08 2E-12 86.5 7.1 80 175-263 101-180 (231)
77 KOG4454 RNA binding protein (R 98.6 2E-08 4.4E-13 89.4 2.5 76 175-260 9-84 (267)
78 KOG1548 Transcription elongati 98.6 2E-07 4.3E-12 87.7 8.4 83 172-263 131-221 (382)
79 KOG1995 Conserved Zn-finger pr 98.6 2.7E-07 5.8E-12 87.1 9.0 82 174-263 65-154 (351)
80 KOG4205 RNA-binding protein mu 98.6 7.6E-08 1.7E-12 90.5 5.2 71 174-248 5-75 (311)
81 KOG4660 Protein Mei2, essentia 98.5 6.7E-08 1.5E-12 95.4 4.2 67 174-248 74-140 (549)
82 KOG0151 Predicted splicing reg 98.5 2.6E-07 5.7E-12 93.4 7.9 83 175-262 174-256 (877)
83 KOG4661 Hsp27-ERE-TATA-binding 98.5 2.2E-07 4.9E-12 92.1 6.9 81 175-263 405-485 (940)
84 KOG0124 Polypyrimidine tract-b 98.5 2.2E-07 4.9E-12 88.1 6.5 81 174-262 209-289 (544)
85 PF04059 RRM_2: RNA recognitio 98.5 1.6E-06 3.4E-11 68.6 9.5 85 176-264 2-88 (97)
86 KOG0116 RasGAP SH3 binding pro 98.4 6.9E-07 1.5E-11 87.1 8.4 79 174-261 287-365 (419)
87 KOG1190 Polypyrimidine tract-b 98.4 1.4E-06 3E-11 83.7 9.6 76 175-263 297-373 (492)
88 KOG0226 RNA-binding proteins [ 98.3 5.5E-07 1.2E-11 81.9 4.6 72 174-248 189-260 (290)
89 KOG4205 RNA-binding protein mu 98.3 7.9E-07 1.7E-11 83.7 5.6 80 174-262 96-175 (311)
90 KOG1456 Heterogeneous nuclear 98.1 6.3E-05 1.4E-09 71.9 12.8 77 174-263 286-363 (494)
91 KOG0120 Splicing factor U2AF, 98.0 4.5E-06 9.8E-11 82.7 4.8 83 172-262 286-368 (500)
92 PF11608 Limkain-b1: Limkain b 98.0 2.4E-05 5.3E-10 60.3 7.7 70 176-263 3-77 (90)
93 KOG4307 RNA binding protein RB 98.0 0.00017 3.7E-09 73.5 15.2 70 175-248 867-937 (944)
94 KOG1456 Heterogeneous nuclear 98.0 2.6E-05 5.6E-10 74.5 8.6 79 174-263 119-199 (494)
95 KOG1190 Polypyrimidine tract-b 98.0 1.5E-05 3.3E-10 76.7 6.6 78 174-262 413-490 (492)
96 KOG4211 Splicing factor hnRNP- 97.8 3.9E-05 8.4E-10 75.3 7.1 66 176-248 11-76 (510)
97 KOG4210 Nuclear localization s 97.8 2.7E-05 5.8E-10 72.7 4.8 81 174-263 183-264 (285)
98 PF08777 RRM_3: RNA binding mo 97.7 7.9E-05 1.7E-09 59.6 6.3 59 176-243 2-60 (105)
99 KOG0147 Transcriptional coacti 97.7 1.6E-05 3.4E-10 78.8 1.8 80 174-262 178-257 (549)
100 KOG2314 Translation initiation 97.7 0.00012 2.5E-09 73.1 7.7 78 174-259 57-140 (698)
101 KOG1855 Predicted RNA-binding 97.6 9.7E-05 2.1E-09 71.6 5.4 70 174-243 230-309 (484)
102 KOG4211 Splicing factor hnRNP- 97.5 0.0004 8.7E-09 68.3 8.3 69 175-248 103-172 (510)
103 KOG0106 Alternative splicing f 97.5 7.6E-05 1.6E-09 66.9 3.1 70 174-259 98-167 (216)
104 KOG4849 mRNA cleavage factor I 97.4 0.00012 2.5E-09 69.6 3.8 80 175-261 80-161 (498)
105 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00064 1.4E-08 47.8 5.0 52 176-237 2-53 (53)
106 COG5175 MOT2 Transcriptional r 97.1 0.0014 3E-08 62.2 7.4 82 175-261 114-201 (480)
107 KOG0129 Predicted RNA-binding 97.0 0.002 4.4E-08 63.8 7.8 66 174-240 258-326 (520)
108 KOG0129 Predicted RNA-binding 96.8 0.0045 9.7E-08 61.4 7.7 67 170-239 365-432 (520)
109 KOG0128 RNA-binding protein SA 96.8 0.00067 1.5E-08 70.4 2.1 78 175-261 736-813 (881)
110 KOG4676 Splicing factor, argin 96.7 0.0016 3.6E-08 62.7 4.3 72 176-248 8-79 (479)
111 KOG0105 Alternative splicing f 96.7 0.014 3E-07 51.6 9.5 63 175-247 115-177 (241)
112 KOG0120 Splicing factor U2AF, 96.6 0.0057 1.2E-07 61.1 7.6 64 191-260 425-489 (500)
113 PF08675 RNA_bind: RNA binding 96.6 0.011 2.4E-07 45.7 7.5 55 175-241 9-63 (87)
114 KOG3152 TBP-binding protein, a 96.5 0.0019 4.1E-08 59.1 2.9 75 175-249 74-157 (278)
115 KOG1365 RNA-binding protein Fu 96.5 0.012 2.7E-07 56.7 8.3 59 177-239 163-225 (508)
116 KOG0112 Large RNA-binding prot 96.4 0.0044 9.5E-08 64.9 5.6 79 174-264 454-532 (975)
117 KOG1548 Transcription elongati 96.4 0.01 2.3E-07 56.4 7.1 69 174-249 264-343 (382)
118 KOG1365 RNA-binding protein Fu 96.3 0.0061 1.3E-07 58.8 5.3 70 175-248 280-352 (508)
119 KOG2416 Acinus (induces apopto 96.1 0.0069 1.5E-07 61.1 4.5 78 174-262 443-521 (718)
120 PF10309 DUF2414: Protein of u 95.9 0.029 6.2E-07 40.9 5.9 54 176-240 6-62 (62)
121 PF03467 Smg4_UPF3: Smg-4/UPF3 95.8 0.021 4.6E-07 49.6 6.0 89 174-263 6-98 (176)
122 PF08952 DUF1866: Domain of un 95.8 0.029 6.2E-07 47.6 6.3 55 191-262 52-106 (146)
123 PF05172 Nup35_RRM: Nup53/35/4 95.7 0.051 1.1E-06 43.2 7.3 77 175-260 6-89 (100)
124 KOG0115 RNA-binding protein p5 95.5 0.014 3E-07 53.6 3.7 62 176-241 32-93 (275)
125 KOG0128 RNA-binding protein SA 95.4 0.0011 2.3E-08 69.0 -4.1 68 175-245 667-734 (881)
126 KOG4307 RNA binding protein RB 95.0 0.029 6.2E-07 57.8 4.4 82 170-260 429-511 (944)
127 KOG1996 mRNA splicing factor [ 94.8 0.082 1.8E-06 49.6 6.5 66 189-261 300-365 (378)
128 KOG0112 Large RNA-binding prot 94.8 0.0067 1.5E-07 63.6 -0.6 71 174-248 371-441 (975)
129 KOG2202 U2 snRNP splicing fact 94.7 0.019 4.2E-07 52.6 2.1 62 191-261 84-146 (260)
130 PF07576 BRAP2: BRCA1-associat 94.5 0.45 9.7E-06 38.5 9.5 71 175-250 13-84 (110)
131 KOG2193 IGF-II mRNA-binding pr 94.5 0.028 6E-07 55.0 2.9 73 176-263 2-76 (584)
132 KOG4574 RNA-binding protein (c 94.5 0.023 4.9E-07 59.5 2.4 73 179-263 302-374 (1007)
133 PF04847 Calcipressin: Calcipr 94.3 0.074 1.6E-06 46.7 4.9 61 188-262 8-70 (184)
134 KOG4660 Protein Mei2, essentia 94.1 0.079 1.7E-06 53.2 5.1 62 199-264 413-474 (549)
135 KOG2068 MOT2 transcription fac 93.6 0.033 7.2E-07 52.8 1.5 82 175-262 77-162 (327)
136 KOG2591 c-Mpl binding protein, 93.1 0.27 5.9E-06 49.7 6.9 65 174-248 174-247 (684)
137 PF15023 DUF4523: Protein of u 92.3 0.57 1.2E-05 39.9 6.8 70 175-260 86-159 (166)
138 PF03880 DbpA: DbpA RNA bindin 89.3 1.7 3.6E-05 32.2 6.4 67 177-260 2-74 (74)
139 KOG0804 Cytoplasmic Zn-finger 85.4 2.7 5.8E-05 41.7 6.9 72 175-251 74-146 (493)
140 KOG2318 Uncharacterized conser 85.2 2.8 6.2E-05 42.7 7.2 76 173-248 172-296 (650)
141 KOG4210 Nuclear localization s 85.1 0.52 1.1E-05 44.1 1.9 72 174-248 87-158 (285)
142 KOG2135 Proteins containing th 84.5 0.78 1.7E-05 45.6 2.8 73 175-262 372-445 (526)
143 KOG2253 U1 snRNP complex, subu 83.3 2.1 4.6E-05 44.1 5.4 64 174-249 39-102 (668)
144 KOG4285 Mitotic phosphoprotein 79.7 3 6.6E-05 39.5 4.7 60 178-248 200-259 (350)
145 PF11767 SET_assoc: Histone ly 76.3 14 0.00031 27.1 6.5 51 186-248 11-61 (66)
146 KOG4019 Calcineurin-mediated s 65.7 4.2 9.2E-05 35.8 2.0 73 176-261 11-88 (193)
147 KOG2295 C2H2 Zn-finger protein 61.9 1.4 3.1E-05 44.6 -1.8 72 174-248 230-301 (648)
148 KOG4676 Splicing factor, argin 61.3 1.7 3.7E-05 42.4 -1.3 66 175-248 151-216 (479)
149 PF03468 XS: XS domain; Inter 60.3 11 0.00023 30.7 3.3 53 177-235 10-71 (116)
150 KOG2193 IGF-II mRNA-binding pr 57.5 0.57 1.2E-05 46.1 -5.3 77 174-261 79-155 (584)
151 COG0724 RNA-binding proteins ( 55.8 15 0.00032 31.1 3.7 62 174-238 224-285 (306)
152 KOG4454 RNA binding protein (R 52.2 4.7 0.0001 36.7 0.0 69 176-248 81-153 (267)
153 KOG4410 5-formyltetrahydrofola 50.9 16 0.00035 34.6 3.2 48 176-231 331-378 (396)
154 COG5638 Uncharacterized conser 44.6 36 0.00078 33.8 4.7 77 172-248 143-286 (622)
155 KOG4483 Uncharacterized conser 41.6 43 0.00094 33.1 4.7 54 176-239 392-446 (528)
156 PF14893 PNMA: PNMA 39.2 24 0.00052 33.9 2.6 51 174-230 17-72 (331)
157 KOG2891 Surface glycoprotein [ 37.6 24 0.00051 33.4 2.2 88 175-262 149-267 (445)
158 TIGR00110 ilvD dihydroxy-acid 36.4 1.7E+02 0.0038 30.0 8.2 68 175-270 355-422 (535)
159 PF10567 Nab6_mRNP_bdg: RNA-re 33.2 61 0.0013 30.7 4.1 84 175-261 15-106 (309)
160 PF15513 DUF4651: Domain of un 31.5 94 0.002 22.7 4.0 20 190-209 9-28 (62)
161 KOG4008 rRNA processing protei 29.6 31 0.00067 31.8 1.5 31 175-205 40-70 (261)
162 KOG0921 Dosage compensation co 29.1 1.1E+02 0.0025 33.6 5.7 12 103-114 1193-1204(1282)
163 PF11411 DNA_ligase_IV: DNA li 27.5 38 0.00083 22.1 1.3 16 185-200 19-34 (36)
164 PF00403 HMA: Heavy-metal-asso 26.9 2.1E+02 0.0045 19.4 5.8 54 177-239 1-58 (62)
165 PRK06131 dihydroxy-acid dehydr 25.0 3.9E+02 0.0084 27.8 8.6 69 175-270 373-442 (571)
166 PRK12448 dihydroxy-acid dehydr 24.9 3E+02 0.0066 28.8 7.8 40 220-270 448-487 (615)
167 KOG1295 Nonsense-mediated deca 24.9 86 0.0019 30.7 3.7 73 175-248 7-80 (376)
168 PF07292 NID: Nmi/IFP 35 domai 24.2 41 0.00089 26.1 1.2 21 175-195 52-72 (88)
169 PRK11634 ATP-dependent RNA hel 23.5 2.4E+02 0.0052 29.3 6.9 70 176-262 487-562 (629)
170 PF08544 GHMP_kinases_C: GHMP 22.0 2.4E+02 0.0052 20.1 5.0 43 191-241 38-80 (85)
171 KOG0156 Cytochrome P450 CYP2 s 21.0 1.9E+02 0.0042 29.1 5.5 66 170-248 27-95 (489)
172 KOG4365 Uncharacterized conser 20.9 19 0.00041 36.0 -1.6 78 176-262 4-81 (572)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=2e-18 Score=145.10 Aligned_cols=82 Identities=18% Similarity=0.411 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.+++|||+|||+++||++|+++|++||.|++|+|+.++.+ ++++|||||+|.+.++|++|++.||+..|+++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr----- 104 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRET---GRSRGFGFVNFNDEGAATAAISEMDGKELNGR----- 104 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHcCCCEECCE-----
Confidence 3689999999999999999999999999999999988765 89999999999999999999999999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|+|++.+
T Consensus 105 ~l~V~~a~~~ 114 (144)
T PLN03134 105 HIRVNPANDR 114 (144)
T ss_pred EEEEEeCCcC
Confidence 7999999754
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.70 E-value=4.5e-16 Score=147.92 Aligned_cols=82 Identities=27% Similarity=0.420 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||+++||++|+++|++||.|++|+|+.++.+ ++++|||||+|.++++|++|++.||+..|.++
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~t---g~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr----- 177 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKT---GYSFGYAFVDFGSEADSQRAIKNLNGITVRNK----- 177 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CccCcEEEEEEccHHHHHHHHHHcCCCccCCc-----
Confidence 4689999999999999999999999999999999988765 89999999999999999999999999999988
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
+|+|+|++..
T Consensus 178 ~i~V~~a~p~ 187 (346)
T TIGR01659 178 RLKVSYARPG 187 (346)
T ss_pred eeeeeccccc
Confidence 6999998753
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=1.7e-16 Score=148.57 Aligned_cols=83 Identities=24% Similarity=0.395 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.+.+|||+|||+++++++|+++|++||.|++++|+.+..+ +.+||||||+|.+.++|.+|+..|||+.|.|+
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t---~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr----- 339 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTT---NQCKGYGFVSMTNYDEAAMAILSLNGYTLGNR----- 339 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCC---CCccceEEEEECCHHHHHHHHHHhCCCEECCe-----
Confidence 3458999999999999999999999999999999998765 89999999999999999999999999999998
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
.|+|+|+....
T Consensus 340 ~i~V~~~~~~~ 350 (352)
T TIGR01661 340 VLQVSFKTNKA 350 (352)
T ss_pred EEEEEEccCCC
Confidence 79999987653
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.67 E-value=2.8e-16 Score=147.10 Aligned_cols=81 Identities=25% Similarity=0.468 Sum_probs=76.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||+|||.++||++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++|++.|||..+.++ .
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~---g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~-----~ 74 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVT---GQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK-----T 74 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCC---CccceEEEEEECcHHHHHHHHhhcccEEECCe-----e
Confidence 589999999999999999999999999999999998765 89999999999999999999999999999998 7
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|+|+|++..
T Consensus 75 i~v~~a~~~ 83 (352)
T TIGR01661 75 IKVSYARPS 83 (352)
T ss_pred EEEEeeccc
Confidence 999998754
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=8.9e-16 Score=110.38 Aligned_cols=67 Identities=31% Similarity=0.536 Sum_probs=63.2
Q ss_pred EEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 178 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 178 LfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
|||+|||.++|+++|+++|++||.|..+++..+.. +..+++|||+|.+.++|++|++.|||+.+.++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSS----GKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccccc----ccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 79999999999999999999999999999998732 78889999999999999999999999999987
No 6
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.8e-15 Score=135.59 Aligned_cols=82 Identities=30% Similarity=0.479 Sum_probs=78.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|-|.||+.+++|++|++||.+||.|..|.|..++.+ |.+||||||.|.++++|++||+.|||+-++.-
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~T---G~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L----- 259 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKET---GLSKGFAFVTFESRDDAARAIADLNGYGYDNL----- 259 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEcccc---CcccceEEEEEecHHHHHHHHHHccCcccceE-----
Confidence 6899999999999999999999999999999999999987 99999999999999999999999999999876
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|+|+++.
T Consensus 260 ILrvEwskP~ 269 (270)
T KOG0122|consen 260 ILRVEWSKPS 269 (270)
T ss_pred EEEEEecCCC
Confidence 7999999863
No 7
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=8.9e-16 Score=125.98 Aligned_cols=80 Identities=24% Similarity=0.427 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.++||||+||++.++|++|.+||+++|+|+.|.|-.++.+ -.++|||||+|.+.++|+.|++.++|+.++.+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~k---ktpCGFCFVeyy~~~dA~~AlryisgtrLddr----- 106 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFK---KTPCGFCFVEYYSRDDAEDALRYISGTRLDDR----- 106 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCC---cCccceEEEEEecchhHHHHHHHhccCccccc-----
Confidence 4799999999999999999999999999999999888776 67899999999999999999999999999998
Q ss_pred cEEEEecc
Q 023903 254 FLRLQFSR 261 (275)
Q Consensus 254 ~LrV~~Ar 261 (275)
+|+|.|.-
T Consensus 107 ~ir~D~D~ 114 (153)
T KOG0121|consen 107 PIRIDWDA 114 (153)
T ss_pred ceeeeccc
Confidence 89999853
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.60 E-value=6.1e-15 Score=140.21 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=75.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
..+|||+|||.++||++|+++|++||.|++|+|+.++.+ +++||||||+|++.++|++||+.||++.+.+.. .+
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~t---g~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~---~~ 266 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLT---GTPRGVAFVRFNKREEAQEAISALNNVIPEGGS---QP 266 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCC---CccceEEEEEECCHHHHHHHHHHhCCCccCCCc---ee
Confidence 568999999999999999999999999999999988765 899999999999999999999999999998752 27
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|+|.|++..
T Consensus 267 l~V~~a~~~ 275 (346)
T TIGR01659 267 LTVRLAEEH 275 (346)
T ss_pred EEEEECCcc
Confidence 999998754
No 9
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=9.1e-15 Score=125.53 Aligned_cols=77 Identities=26% Similarity=0.417 Sum_probs=70.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||+||+.++++.||+.+|..||.|..|.|..... |||||||+++.+|+.|+..|+|..|+|. .
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP--------GfAFVEFed~RDA~DAvr~LDG~~~cG~-----r 76 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP--------GFAFVEFEDPRDAEDAVRYLDGKDICGS-----R 76 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC--------CceEEeccCcccHHHHHhhcCCccccCc-----e
Confidence 58999999999999999999999999999999886543 7999999999999999999999999998 5
Q ss_pred EEEEeccCCC
Q 023903 255 LRLQFSRNPG 264 (275)
Q Consensus 255 LrV~~Ar~~~ 264 (275)
|+|++++-..
T Consensus 77 ~rVE~S~G~~ 86 (195)
T KOG0107|consen 77 IRVELSTGRP 86 (195)
T ss_pred EEEEeecCCc
Confidence 9999987653
No 10
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=7.7e-14 Score=128.11 Aligned_cols=84 Identities=21% Similarity=0.356 Sum_probs=78.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 172 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 172 p~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
-+|-+||||+-|+.+++|..|+..|+.||.|+.|+||.++.+ |++||||||+|+++.+...|.+..+|.+|+++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vT---gkskGYAFIeye~erdm~~AYK~adG~~Idgr--- 171 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVT---GKSKGYAFIEYEHERDMKAAYKDADGIKIDGR--- 171 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeeccc---CCccceEEEEeccHHHHHHHHHhccCceecCc---
Confidence 367899999999999999999999999999999999999886 99999999999999999999999999999999
Q ss_pred CccEEEEeccCC
Q 023903 252 SKFLRLQFSRNP 263 (275)
Q Consensus 252 ~~~LrV~~Ar~~ 263 (275)
.|-|.+-+-.
T Consensus 172 --ri~VDvERgR 181 (335)
T KOG0113|consen 172 --RILVDVERGR 181 (335)
T ss_pred --EEEEEecccc
Confidence 5777776654
No 11
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2.8e-14 Score=123.74 Aligned_cols=77 Identities=34% Similarity=0.618 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
+++|||+|||.++.|.||++||.+||.|++|.|.... + +-.||||+|+++.+|+.||..-+|+.+++. .
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-----g-~ppfafVeFEd~RDAeDAiygRdGYdydg~-----r 74 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-----G-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGC-----R 74 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-----C-CCCeeEEEecCccchhhhhhcccccccCcc-----e
Confidence 6899999999999999999999999999999886443 2 236999999999999999999999999999 6
Q ss_pred EEEEeccC
Q 023903 255 LRLQFSRN 262 (275)
Q Consensus 255 LrV~~Ar~ 262 (275)
|+|+|++-
T Consensus 75 LRVEfprg 82 (241)
T KOG0105|consen 75 LRVEFPRG 82 (241)
T ss_pred EEEEeccC
Confidence 99999975
No 12
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=1.4e-13 Score=100.13 Aligned_cols=67 Identities=28% Similarity=0.530 Sum_probs=61.2
Q ss_pred EEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 178 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 178 LfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
|||+|||+++++++|+++|+.||.|..+++..++. +.++++|||+|.++++|.+|++.+++..++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~----~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD----GQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec----cccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 79999999999999999999999999999998753 67889999999999999999999999999987
No 13
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.2e-13 Score=126.00 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=69.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||+|||+++||++|+++|+.||.|++|+|+.++ .++|||||+|.++++|++|+ .|||..|.++ .
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~------~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr-----~ 71 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN------ERSQIAYVTFKDPQGAETAL-LLSGATIVDQ-----S 71 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC------CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCc-----e
Confidence 4799999999999999999999999999999998774 24589999999999999999 5999999998 6
Q ss_pred EEEEeccC
Q 023903 255 LRLQFSRN 262 (275)
Q Consensus 255 LrV~~Ar~ 262 (275)
|+|.++..
T Consensus 72 V~Vt~a~~ 79 (260)
T PLN03120 72 VTITPAED 79 (260)
T ss_pred EEEEeccC
Confidence 99999874
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.49 E-value=1.4e-13 Score=135.18 Aligned_cols=81 Identities=19% Similarity=0.361 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||..+|+++|+++|++||.|+.+.|+.+..+ |+++|||||+|.+.++|..|++.|||..|.++
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~----- 365 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIAT---GLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN----- 365 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---CCcCeEEEEEECCHHHHHHHHHHcCCCEECCe-----
Confidence 4689999999999999999999999999999999988654 88999999999999999999999999999998
Q ss_pred cEEEEeccC
Q 023903 254 FLRLQFSRN 262 (275)
Q Consensus 254 ~LrV~~Ar~ 262 (275)
.|+|+++..
T Consensus 366 ~l~v~~a~~ 374 (509)
T TIGR01642 366 KLHVQRACV 374 (509)
T ss_pred EEEEEECcc
Confidence 699999864
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.49 E-value=1.3e-13 Score=133.91 Aligned_cols=80 Identities=24% Similarity=0.455 Sum_probs=75.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
+++|||+|||.++|+++|+++|++||.|+.|+++.+..+ |+++|||||+|.+.++|.+|++.|||..|.++ +
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~---g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~-----~ 257 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPET---GRSKGFGFIQFHDAEEAKEALEVMNGFELAGR-----P 257 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHhcCCcEECCE-----E
Confidence 689999999999999999999999999999999988764 78999999999999999999999999999998 7
Q ss_pred EEEEeccC
Q 023903 255 LRLQFSRN 262 (275)
Q Consensus 255 LrV~~Ar~ 262 (275)
|+|.|+..
T Consensus 258 i~v~~a~~ 265 (457)
T TIGR01622 258 IKVGYAQD 265 (457)
T ss_pred EEEEEccC
Confidence 99999764
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.49 E-value=1.2e-13 Score=139.23 Aligned_cols=81 Identities=15% Similarity=0.335 Sum_probs=76.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||+|||.++++++|+++|+.||.|++++|+.++.+ +++||||||+|.+.++|.+|++.||++.|.|+ .
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~t---gksKGfGFVeFe~~e~A~kAI~amNg~elgGr-----~ 275 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG---RGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ-----Y 275 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC---CCcCCeEEEEECCHHHHHHHHHHhCCCeeCCe-----E
Confidence 579999999999999999999999999999999988765 88999999999999999999999999999998 6
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|+|.++..+
T Consensus 276 LrV~kAi~p 284 (612)
T TIGR01645 276 LRVGKCVTP 284 (612)
T ss_pred EEEEecCCC
Confidence 999999864
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.49 E-value=9.9e-14 Score=139.86 Aligned_cols=81 Identities=20% Similarity=0.363 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||++++|++|+++|++||.|++|+|+.++.+ |++||||||+|.+.++|++|++.|||..|.|+
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~T---gkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR----- 177 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPAT---GKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR----- 177 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCC---CCcCCeEEEEeCcHHHHHHHHHhcCCeEEecc-----
Confidence 4579999999999999999999999999999999988765 89999999999999999999999999999998
Q ss_pred cEEEEeccC
Q 023903 254 FLRLQFSRN 262 (275)
Q Consensus 254 ~LrV~~Ar~ 262 (275)
.|+|.+...
T Consensus 178 ~IkV~rp~~ 186 (612)
T TIGR01645 178 NIKVGRPSN 186 (612)
T ss_pred eeeeccccc
Confidence 699987543
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.47 E-value=1.6e-13 Score=137.07 Aligned_cols=78 Identities=29% Similarity=0.457 Sum_probs=73.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEE
Q 023903 177 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 256 (275)
Q Consensus 177 tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~Lr 256 (275)
+|||+|||.++||++|+++|++||.|++|+|..++.+ ++++|||||+|.+.++|++|++.||+..|.++ .|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t---~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk-----~i~ 73 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVT---RRSLGYGYVNFQNPADAERALETMNFKRLGGK-----PIR 73 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECCe-----eEE
Confidence 6999999999999999999999999999999998765 88999999999999999999999999999998 699
Q ss_pred EEeccC
Q 023903 257 LQFSRN 262 (275)
Q Consensus 257 V~~Ar~ 262 (275)
|.|+..
T Consensus 74 i~~s~~ 79 (562)
T TIGR01628 74 IMWSQR 79 (562)
T ss_pred eecccc
Confidence 999864
No 19
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=2.7e-13 Score=107.84 Aligned_cols=84 Identities=25% Similarity=0.464 Sum_probs=75.3
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 023903 167 TLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 246 (275)
Q Consensus 167 ~~~~pp~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~ 246 (275)
...+||.-++.|||.|||+++|.+++.+||.+||.|+.|+|-..+.+ +|-|||.|++..+|.+|++.|+|+.++
T Consensus 10 ~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T------rGTAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 10 NIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET------RGTAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred CCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc------CceEEEEehHhhhHHHHHHHhcccccC
Confidence 45577777899999999999999999999999999999999877643 589999999999999999999999999
Q ss_pred CCCCCCccEEEEecc
Q 023903 247 EDDPDSKFLRLQFSR 261 (275)
Q Consensus 247 g~~~~~~~LrV~~Ar 261 (275)
++ .|.|-|-.
T Consensus 84 ~r-----yl~vlyyq 93 (124)
T KOG0114|consen 84 NR-----YLVVLYYQ 93 (124)
T ss_pred Cc-----eEEEEecC
Confidence 98 68887754
No 20
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.46 E-value=1.3e-13 Score=121.37 Aligned_cols=81 Identities=22% Similarity=0.331 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.-.+|-|-||..-++.++|+.+|++||.|-+|.|..++-+ +.++|||||-|.+..+|+.|+++|+|.+++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~T---r~sRgFaFVrf~~k~daedA~damDG~~ldgR----- 83 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYT---RQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR----- 83 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceeccccccc---ccccceeEEEeeecchHHHHHHhhcceeeccc-----
Confidence 3578999999999999999999999999999999999876 88999999999999999999999999999999
Q ss_pred cEEEEeccC
Q 023903 254 FLRLQFSRN 262 (275)
Q Consensus 254 ~LrV~~Ar~ 262 (275)
.|+||+|+.
T Consensus 84 elrVq~ary 92 (256)
T KOG4207|consen 84 ELRVQMARY 92 (256)
T ss_pred eeeehhhhc
Confidence 699999986
No 21
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=4.7e-13 Score=94.46 Aligned_cols=71 Identities=31% Similarity=0.523 Sum_probs=64.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEE
Q 023903 177 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 256 (275)
Q Consensus 177 tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~Lr 256 (275)
+|||+|||.++++++|+++|++||.+..+++..++ +.++++|||+|.+.++|++|++.+++..+.++ .|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~-----~i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-----GKSKGFAFVEFESEEDAEKAIEALNGTKLGGR-----PLR 70 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CCCCceEEEEeCCHHHHHHHHHHhCCcEECCE-----EEe
Confidence 58999999999999999999999999999988665 56778999999999999999999999999887 466
Q ss_pred E
Q 023903 257 L 257 (275)
Q Consensus 257 V 257 (275)
|
T Consensus 71 v 71 (72)
T smart00362 71 V 71 (72)
T ss_pred e
Confidence 5
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.45 E-value=3.5e-13 Score=135.46 Aligned_cols=79 Identities=24% Similarity=0.337 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||++++|++|+++|++||.|.+|+|+.+.. |+++|||||+|.+.++|++||+.||++.|...+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~s----G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr---- 128 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFS----GQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGR---- 128 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCC----CCccceEEEEeCCHHHHHHHHHHcCCCeecCCc----
Confidence 458999999999999999999999999999999998843 899999999999999999999999999996432
Q ss_pred cEEEEec
Q 023903 254 FLRLQFS 260 (275)
Q Consensus 254 ~LrV~~A 260 (275)
.|.|.++
T Consensus 129 ~l~V~~S 135 (578)
T TIGR01648 129 LLGVCIS 135 (578)
T ss_pred ccccccc
Confidence 4666554
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.45 E-value=3.4e-13 Score=134.69 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+||+.++|+++|+++|++||.|++|+++.+.. |+++|||||+|.+.++|++|+..|||..|.++
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~----g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk----- 354 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK----GVSRGFGFVCFSNPEEANRAVTEMHGRMLGGK----- 354 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC----CCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCc-----
Confidence 457899999999999999999999999999999998853 89999999999999999999999999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
+|+|.||...
T Consensus 355 ~l~V~~a~~k 364 (562)
T TIGR01628 355 PLYVALAQRK 364 (562)
T ss_pred eeEEEeccCc
Confidence 7999998753
No 24
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.44 E-value=5e-13 Score=115.70 Aligned_cols=79 Identities=33% Similarity=0.536 Sum_probs=74.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||+|||.++|+++|.++|.+||.|..+++..++.+ ++++|||||+|.+.++|..|++.+++..|.++ .
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~---~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~-----~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRET---GKSRGFAFVEFESEESAEKAIEELNGKELEGR-----P 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecccc---CccCceEEEEecCHHHHHHHHHHcCCCeECCc-----e
Confidence 599999999999999999999999999999999988744 89999999999999999999999999999999 6
Q ss_pred EEEEecc
Q 023903 255 LRLQFSR 261 (275)
Q Consensus 255 LrV~~Ar 261 (275)
|+|+++.
T Consensus 187 ~~v~~~~ 193 (306)
T COG0724 187 LRVQKAQ 193 (306)
T ss_pred eEeeccc
Confidence 9999975
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.44 E-value=4.6e-13 Score=130.00 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=74.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||.++++++|+++|++||.|..|+|+.++.+ ++++|||||+|.+.++|++|+. |+|..+.++
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~---~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~----- 158 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNS---RRSKGVAYVEFYDVESVIKALA-LTGQMLLGR----- 158 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC---CCcceEEEEEECCHHHHHHHHH-hCCCEECCe-----
Confidence 4689999999999999999999999999999999988765 8999999999999999999995 999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
+|.|+++...
T Consensus 159 ~i~v~~~~~~ 168 (457)
T TIGR01622 159 PIIVQSSQAE 168 (457)
T ss_pred eeEEeecchh
Confidence 6999887643
No 26
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=3.4e-13 Score=125.29 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.-++|+|+|||+..-|.||+.+|++||.|.+|.||.++ .-+|||+||+|++.++|++|.++|||..|.|+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-----RGSKGFGFVTmen~~dadRARa~LHgt~VEGR----- 164 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-----RGSKGFGFVTMENPADADRARAELHGTVVEGR----- 164 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-----CCCCccceEEecChhhHHHHHHHhhcceeece-----
Confidence 45899999999999999999999999999999999887 45899999999999999999999999999999
Q ss_pred cEEEEeccC
Q 023903 254 FLRLQFSRN 262 (275)
Q Consensus 254 ~LrV~~Ar~ 262 (275)
.|.|..|..
T Consensus 165 kIEVn~ATa 173 (376)
T KOG0125|consen 165 KIEVNNATA 173 (376)
T ss_pred EEEEeccch
Confidence 588887754
No 27
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=2.8e-13 Score=120.96 Aligned_cols=71 Identities=20% Similarity=0.298 Sum_probs=64.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 249 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~ 249 (275)
-.+|||++|+|+++.++|++.|++||+|++..||.|+.+ |++|||+||+|.+.+.|++|++.- .-.|+|++
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t---~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~ 82 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNT---GRSKGYGFVTFRDAEAATRACKDP-NPIIDGRK 82 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCC---ccccceeeEEeecHHHHHHHhcCC-CCcccccc
Confidence 367999999999999999999999999999999999987 999999999999999999999653 35577773
No 28
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.41 E-value=1e-12 Score=129.58 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 174 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP~-~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
++++|||+|||+ ++|+++|++||++||.|.+|+++.++ +|||||+|.+.++|+.|+..|||..|.|+
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--------~g~afV~f~~~~~A~~Ai~~lng~~l~g~---- 341 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--------KETALIEMADPYQAQLALTHLNGVKLFGK---- 341 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECCc----
Confidence 468999999998 69999999999999999999998764 37999999999999999999999999998
Q ss_pred ccEEEEeccCC
Q 023903 253 KFLRLQFSRNP 263 (275)
Q Consensus 253 ~~LrV~~Ar~~ 263 (275)
.|+|++++..
T Consensus 342 -~l~v~~s~~~ 351 (481)
T TIGR01649 342 -PLRVCPSKQQ 351 (481)
T ss_pred -eEEEEEcccc
Confidence 7999999764
No 29
>smart00360 RRM RNA recognition motif.
Probab=99.40 E-value=1.4e-12 Score=91.48 Aligned_cols=71 Identities=35% Similarity=0.534 Sum_probs=63.9
Q ss_pred EcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEEEE
Q 023903 180 VEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQ 258 (275)
Q Consensus 180 VgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~LrV~ 258 (275)
|+|||..+++++|+++|++||.|..+++..++.+ ++++++|||+|.+.++|..|++.|++..+.++ .|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~---~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~-----~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDT---GKSKGFAFVEFESEEDAEKALEALNGKELDGR-----PLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCC---CCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc-----EEEeC
Confidence 5799999999999999999999999999877643 78889999999999999999999999999887 47663
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.40 E-value=1.3e-12 Score=131.24 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCC--CCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~f--G~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
..++|||+||++++||++|+++|++| |.|++|++++ +||||+|++.++|++|++.||+..|+++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-----------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr--- 297 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-----------DYAFVHFEDREDAVKAMDELNGKELEGS--- 297 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-----------CeEEEEeCCHHHHHHHHHHhCCCEECCE---
Confidence 35789999999999999999999999 9999997752 4999999999999999999999999998
Q ss_pred CccEEEEeccCC
Q 023903 252 SKFLRLQFSRNP 263 (275)
Q Consensus 252 ~~~LrV~~Ar~~ 263 (275)
.|+|+|++.+
T Consensus 298 --~I~V~~Akp~ 307 (578)
T TIGR01648 298 --EIEVTLAKPV 307 (578)
T ss_pred --EEEEEEccCC
Confidence 7999999875
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1e-12 Score=119.51 Aligned_cols=76 Identities=22% Similarity=0.420 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.++++||+||+.-+||++|++.|++||.|.+||+.+++ ||+||.|++.|+|+.||..+|+.+|.|+
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q---------GYaFVrF~tkEaAahAIv~mNntei~G~----- 228 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ---------GYAFVRFETKEAAAHAIVQMNNTEIGGQ----- 228 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc---------ceEEEEecchhhHHHHHHHhcCceeCce-----
Confidence 47999999999999999999999999999999999876 7999999999999999999999999999
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.+|..|.|..
T Consensus 229 ~VkCsWGKe~ 238 (321)
T KOG0148|consen 229 LVRCSWGKEG 238 (321)
T ss_pred EEEEeccccC
Confidence 7999999864
No 32
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=8.3e-13 Score=119.74 Aligned_cols=81 Identities=25% Similarity=0.463 Sum_probs=76.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
...|.|..||+++|+|||+.||...|+|++|++++|+.+ |.+.||+||.|.++.+|++|+..|||..+..+ +
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKit---GqSLGYGFVNYv~p~DAe~AintlNGLrLQ~K-----T 112 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKIT---GQSLGYGFVNYVRPKDAEKAINTLNGLRLQNK-----T 112 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeecccc---ccccccceeeecChHHHHHHHhhhcceeeccc-----e
Confidence 456999999999999999999999999999999999987 99999999999999999999999999999887 8
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|+|+||+..
T Consensus 113 IKVSyARPS 121 (360)
T KOG0145|consen 113 IKVSYARPS 121 (360)
T ss_pred EEEEeccCC
Confidence 999999975
No 33
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.38 E-value=4.2e-12 Score=90.01 Aligned_cols=74 Identities=34% Similarity=0.545 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEE
Q 023903 177 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 256 (275)
Q Consensus 177 tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~Lr 256 (275)
+|+|+|||..+++++|+++|+.||.|..+.+..+.. ..++++|||+|.+.++|..|++.+++..+.++ .|+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~----~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~-----~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD----TKSKGFAFVEFEDEEDAEKALEALNGKELGGR-----PLR 71 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC----CCcceEEEEEECCHHHHHHHHHHhCCCeECCe-----EEE
Confidence 489999999999999999999999999999987654 35678999999999999999999999999887 588
Q ss_pred EEe
Q 023903 257 LQF 259 (275)
Q Consensus 257 V~~ 259 (275)
|+|
T Consensus 72 v~~ 74 (74)
T cd00590 72 VEF 74 (74)
T ss_pred EeC
Confidence 764
No 34
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.38 E-value=1.7e-12 Score=128.06 Aligned_cols=85 Identities=20% Similarity=0.321 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCC--EEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC-
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVG--YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP- 250 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~--i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~- 250 (275)
++++|||+|||.++|+++|+++|++||. |+.|++..++ +..+++|||+|++.++|.+|+..||++.|.++..
T Consensus 393 ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-----~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~ 467 (481)
T TIGR01649 393 PSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-----NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGS 467 (481)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-----CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCC
Confidence 4689999999999999999999999998 8888887654 2356899999999999999999999999998731
Q ss_pred CCccEEEEeccCC
Q 023903 251 DSKFLRLQFSRNP 263 (275)
Q Consensus 251 ~~~~LrV~~Ar~~ 263 (275)
..-.|+|+||+.+
T Consensus 468 ~~~~lkv~fs~~~ 480 (481)
T TIGR01649 468 APYHLKVSFSTSR 480 (481)
T ss_pred ccceEEEEeccCC
Confidence 0114999999763
No 35
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=1.3e-12 Score=126.72 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=69.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCH--HHHHHHHHHhCCCeeCCCCCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP--ACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~--~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
..+||||||++++++++|+.+|+.||.|..|.|++.. | ||||||+|.+. .++.+||..|||..+.|+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET-----G--RGFAFVEMssdddaEeeKAISaLNGAEWKGR---- 78 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK-----G--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG---- 78 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc-----C--CceEEEEecCCcHHHHHHHHHHhcCCeecCc----
Confidence 4789999999999999999999999999999999332 6 79999999987 789999999999999999
Q ss_pred ccEEEEeccC
Q 023903 253 KFLRLQFSRN 262 (275)
Q Consensus 253 ~~LrV~~Ar~ 262 (275)
.|+|+-|+.
T Consensus 79 -~LKVNKAKP 87 (759)
T PLN03213 79 -RLRLEKAKE 87 (759)
T ss_pred -eeEEeeccH
Confidence 699998875
No 36
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.6e-13 Score=119.59 Aligned_cols=87 Identities=22% Similarity=0.351 Sum_probs=81.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..+||||++|..+++|.-|...|-+||.|+.|.++.+..+ ++++||+||+|+..++|.+||..||+..+.|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyes---qkHRgFgFVefe~aEDAaaAiDNMnesEL~Gr----- 80 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYES---QKHRGFGFVEFEEAEDAAAAIDNMNESELFGR----- 80 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhc---ccccceeEEEeeccchhHHHhhcCchhhhcce-----
Confidence 4689999999999999999999999999999999998875 88999999999999999999999999999999
Q ss_pred cEEEEeccCCCCCCC
Q 023903 254 FLRLQFSRNPGPRSV 268 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~g 268 (275)
+|+|.||++...+.+
T Consensus 81 tirVN~AkP~kikeg 95 (298)
T KOG0111|consen 81 TIRVNLAKPEKIKEG 95 (298)
T ss_pred eEEEeecCCccccCC
Confidence 899999999865543
No 37
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=2.3e-12 Score=123.35 Aligned_cols=85 Identities=18% Similarity=0.388 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCee-CCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM-DEDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~-~g~~~~~ 252 (275)
..-+|||+.||..++|.||+++|++||.|.+|.|++|+.+ +.++|||||.|.++++|.+|+.+||..+. .|.+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t---~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~--- 106 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKST---GQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH--- 106 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeeccccc---CcccceEEEEeccHHHHHHHHHHhhcccccCCCC---
Confidence 3568999999999999999999999999999999999987 89999999999999999999999998665 4433
Q ss_pred ccEEEEeccCCC
Q 023903 253 KFLRLQFSRNPG 264 (275)
Q Consensus 253 ~~LrV~~Ar~~~ 264 (275)
-+|+|.||....
T Consensus 107 ~pvqvk~Ad~E~ 118 (510)
T KOG0144|consen 107 HPVQVKYADGER 118 (510)
T ss_pred cceeecccchhh
Confidence 279999986543
No 38
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=2.8e-12 Score=115.67 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=67.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
..||||+||++.+||++|+++|+.||.|.+|+|+.+. +.++||||+|.++++|+.|+ .|+|..|.++ +
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~------et~gfAfVtF~d~~aaetAl-lLnGa~l~d~-----~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG------EYACTAYVTFKDAYALETAV-LLSGATIVDQ-----R 72 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC------CcceEEEEEECCHHHHHHHH-hcCCCeeCCc-----e
Confidence 4799999999999999999999999999999999773 44579999999999999999 7999999998 6
Q ss_pred EEEEecc
Q 023903 255 LRLQFSR 261 (275)
Q Consensus 255 LrV~~Ar 261 (275)
|.|.-+.
T Consensus 73 I~It~~~ 79 (243)
T PLN03121 73 VCITRWG 79 (243)
T ss_pred EEEEeCc
Confidence 7776644
No 39
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=1.1e-13 Score=119.59 Aligned_cols=80 Identities=19% Similarity=0.406 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++.-|||+|||++.||.+|.-+|++||.|+.|.+++++.+ |++|||||+.|++..+-..|+..|||.+|.++
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~T---GKSKGFaFLcYEDQRSTILAVDN~NGiki~gR----- 105 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKT---GKSKGFAFLCYEDQRSTILAVDNLNGIKILGR----- 105 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCC---CcccceEEEEecCccceEEEEeccCCceecce-----
Confidence 4678999999999999999999999999999999999987 99999999999999999999999999999999
Q ss_pred cEEEEecc
Q 023903 254 FLRLQFSR 261 (275)
Q Consensus 254 ~LrV~~Ar 261 (275)
+|+|.-..
T Consensus 106 tirVDHv~ 113 (219)
T KOG0126|consen 106 TIRVDHVS 113 (219)
T ss_pred eEEeeecc
Confidence 79987643
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=1.3e-12 Score=124.94 Aligned_cols=85 Identities=26% Similarity=0.361 Sum_probs=76.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCe-eCCCCCCCc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR-MDEDDPDSK 253 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~-~~g~~~~~~ 253 (275)
+++|||+-|+..+||.|++++|++||.|++|.|.++.. +.+||||||.|.+.+.|..||++|||.. +.|. +.
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~----~~sRGcaFV~fstke~A~~Aika~ng~~tmeGc---s~ 196 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD----GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGC---SQ 196 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheeccc----ccccceeEEEEehHHHHHHHHHhhccceeeccC---CC
Confidence 58999999999999999999999999999999999875 8999999999999999999999999954 5555 34
Q ss_pred cEEEEeccCCCCC
Q 023903 254 FLRLQFSRNPGPR 266 (275)
Q Consensus 254 ~LrV~~Ar~~~~r 266 (275)
+|.|.||...+.|
T Consensus 197 PLVVkFADtqkdk 209 (510)
T KOG0144|consen 197 PLVVKFADTQKDK 209 (510)
T ss_pred ceEEEecccCCCc
Confidence 8999999876554
No 41
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.31 E-value=3.8e-12 Score=124.03 Aligned_cols=82 Identities=23% Similarity=0.424 Sum_probs=78.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccE
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 255 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~L 255 (275)
+.+||+|||++++|++|.++|+..|.|..++++.|+.+ |++|||+|++|.+.++|+.|++.|||+++.++ .|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~t---G~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr-----~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRET---GKPKGFGFCEFTDEETAERAIRNLNGAEFNGR-----KL 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccC---CCcCceeeEecCchhhHHHHHHhcCCcccCCc-----eE
Confidence 78999999999999999999999999999999999886 99999999999999999999999999999999 79
Q ss_pred EEEeccCCCC
Q 023903 256 RLQFSRNPGP 265 (275)
Q Consensus 256 rV~~Ar~~~~ 265 (275)
+|.|+.....
T Consensus 91 ~v~~~~~~~~ 100 (435)
T KOG0108|consen 91 RVNYASNRKN 100 (435)
T ss_pred Eeecccccch
Confidence 9999987643
No 42
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.31 E-value=5e-12 Score=112.30 Aligned_cols=78 Identities=26% Similarity=0.407 Sum_probs=71.8
Q ss_pred CCEEEEcCCCCCCCHHHHHH----HHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 175 SSTLYVEGLPADSTKREVAH----IFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~----lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
+.||||.||+..+..++|+. ||++||.|..|..... .+.+|.|||.|.+.+.|..|+.+|+|+.|.|+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt------~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK-- 80 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT------PKMRGQAFVVFKETEAASAALRALQGFPFYGK-- 80 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC------CCccCceEEEecChhHHHHHHHHhcCCcccCc--
Confidence 46999999999999999887 9999999999987744 56789999999999999999999999999999
Q ss_pred CCccEEEEeccCC
Q 023903 251 DSKFLRLQFSRNP 263 (275)
Q Consensus 251 ~~~~LrV~~Ar~~ 263 (275)
+|+|+||+.+
T Consensus 81 ---~mriqyA~s~ 90 (221)
T KOG4206|consen 81 ---PMRIQYAKSD 90 (221)
T ss_pred ---hhheecccCc
Confidence 8999999986
No 43
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=9.5e-12 Score=113.27 Aligned_cols=81 Identities=17% Similarity=0.337 Sum_probs=75.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
+-.+||+-|..+++-+.|++.|.+||+|.+++|++|..+ +|+|||+||.|-+.++|+.||..|||.-|..+ .
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T---~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R-----~ 133 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNT---GKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR-----T 133 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccC---CcccceeEEeccchHHHHHHHHHhCCeeeccc-----e
Confidence 456999999999999999999999999999999999876 99999999999999999999999999999887 7
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
||..||..+
T Consensus 134 IRTNWATRK 142 (321)
T KOG0148|consen 134 IRTNWATRK 142 (321)
T ss_pred eeccccccC
Confidence 999998553
No 44
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.28 E-value=5.4e-12 Score=109.12 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 172 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 172 p~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
.+...||||+||+..++++.|.+||-+.|.|+.+++.+++.+ ...+|||||+|.++++|+-|++.||..++.|+
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~---~~~qGygF~Ef~~eedadYAikiln~VkLYgr--- 79 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVT---QKHQGYGFAEFRTEEDADYAIKILNMVKLYGR--- 79 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhc---ccccceeEEEEechhhhHHHHHHHHHHHhcCc---
Confidence 344589999999999999999999999999999999999876 67889999999999999999999999999999
Q ss_pred CccEEEEecc
Q 023903 252 SKFLRLQFSR 261 (275)
Q Consensus 252 ~~~LrV~~Ar 261 (275)
+|+|.-+.
T Consensus 80 --pIrv~kas 87 (203)
T KOG0131|consen 80 --PIRVNKAS 87 (203)
T ss_pred --eeEEEecc
Confidence 79998876
No 45
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=9.5e-12 Score=103.29 Aligned_cols=83 Identities=19% Similarity=0.344 Sum_probs=76.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.-.|||.++...+||++|.+.|..||.|+.|++-.++.+ |-.||||+|+|++..+|.+|+.+|||..+.++ .
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRt---Gy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q-----~ 143 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRT---GYVKGYALVEYETLKEAQAAIDALNGAELLGQ-----N 143 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeecccccc---ccccceeeeehHhHHHHHHHHHhccchhhhCC-----c
Confidence 467999999999999999999999999999999888765 99999999999999999999999999999998 6
Q ss_pred EEEEeccCCCC
Q 023903 255 LRLQFSRNPGP 265 (275)
Q Consensus 255 LrV~~Ar~~~~ 265 (275)
|.|.|+--.++
T Consensus 144 v~VDw~Fv~gp 154 (170)
T KOG0130|consen 144 VSVDWCFVKGP 154 (170)
T ss_pred eeEEEEEecCC
Confidence 99998765443
No 46
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=2.2e-11 Score=117.01 Aligned_cols=80 Identities=24% Similarity=0.366 Sum_probs=73.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
-+-|||+.||.++.|++|..||++.|.|-+++|+.++.+ |++||||||.|-+.+.|++|++.||++.|.-.+ .
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~s---G~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK----~ 155 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFS---GDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK----L 155 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccC---CCCcceEEEEeecHHHHHHHHHHhhCccccCCC----E
Confidence 578999999999999999999999999999999999765 999999999999999999999999999997553 6
Q ss_pred EEEEecc
Q 023903 255 LRLQFSR 261 (275)
Q Consensus 255 LrV~~Ar 261 (275)
|+|+.+-
T Consensus 156 igvc~Sv 162 (506)
T KOG0117|consen 156 LGVCVSV 162 (506)
T ss_pred eEEEEee
Confidence 8887754
No 47
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=9.5e-12 Score=119.50 Aligned_cols=73 Identities=21% Similarity=0.351 Sum_probs=68.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
-+.|||.||+.++||+.|+++|++||.|.+|+.++| ||||.|.++++|-+|++.+||+.|+|. .
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----------YaFVHf~eR~davkAm~~~ngkeldG~-----~ 322 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----------YAFVHFAEREDAVKAMKETNGKELDGS-----P 322 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----------eeEEeecchHHHHHHHHHhcCceecCc-----e
Confidence 567999999999999999999999999999987744 999999999999999999999999999 7
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|.|.+||.+
T Consensus 323 iEvtLAKP~ 331 (506)
T KOG0117|consen 323 IEVTLAKPV 331 (506)
T ss_pred EEEEecCCh
Confidence 999999976
No 48
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=3.8e-11 Score=109.04 Aligned_cols=80 Identities=25% Similarity=0.420 Sum_probs=75.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.-+|||-||.++++|.-|.++|.+||.|..|++++|..+ .++|||+||.+.+-++|..|+..|||+.+.++ .
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~tt---nkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r-----v 349 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTT---NKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR-----V 349 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCc---ccccceeEEEecchHHHHHHHHHhcCccccce-----E
Confidence 457999999999999999999999999999999999876 89999999999999999999999999999988 8
Q ss_pred EEEEeccC
Q 023903 255 LRLQFSRN 262 (275)
Q Consensus 255 LrV~~Ar~ 262 (275)
|.|+|..+
T Consensus 350 LQVsFKtn 357 (360)
T KOG0145|consen 350 LQVSFKTN 357 (360)
T ss_pred EEEEEecC
Confidence 99999754
No 49
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.23 E-value=5e-11 Score=83.68 Aligned_cols=56 Identities=21% Similarity=0.421 Sum_probs=50.2
Q ss_pred HHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEEEEec
Q 023903 192 VAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 260 (275)
Q Consensus 192 L~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~LrV~~A 260 (275)
|.++|++||.|+++++..++ +++|||+|.+.++|..|++.|||..+.++ +|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~-----~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--------RGFAFVEFASVEDAQKAIEQLNGRQFNGR-----PLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--------TTEEEEEESSHHHHHHHHHHHTTSEETTE-----EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECCc-----EEEEEEC
Confidence 68899999999999998654 26999999999999999999999999998 7999996
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.6e-11 Score=118.96 Aligned_cols=80 Identities=21% Similarity=0.350 Sum_probs=74.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.-.|.|.||||.|.+.+|+.+|+.||.|.+|.|+++.. |+.+|||||.|....+|+.|++.+|+.+|+|+ +
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d----gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR-----~ 187 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD----GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGR-----P 187 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC----CCccceEEEEEeeHHHHHHHHHhccCceecCc-----e
Confidence 56899999999999999999999999999999996654 77779999999999999999999999999999 7
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|-|.||-..
T Consensus 188 VAVDWAV~K 196 (678)
T KOG0127|consen 188 VAVDWAVDK 196 (678)
T ss_pred eEEeeeccc
Confidence 999998653
No 51
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.21 E-value=1.3e-11 Score=113.41 Aligned_cols=72 Identities=24% Similarity=0.463 Sum_probs=67.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccE
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 255 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~L 255 (275)
.+|||+|||.++++.+|+.||++||.|.++.|+++ |+||..++...|+.||+.|||++|+|. .|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----------YgFVHiEdktaaedairNLhgYtLhg~-----nI 66 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----------YGFVHIEDKTAAEDAIRNLHGYTLHGV-----NI 66 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-----------cceEEeecccccHHHHhhcccceecce-----EE
Confidence 47999999999999999999999999999999965 899999999999999999999999998 69
Q ss_pred EEEeccCC
Q 023903 256 RLQFSRNP 263 (275)
Q Consensus 256 rV~~Ar~~ 263 (275)
+|+-+|++
T Consensus 67 nVeaSksK 74 (346)
T KOG0109|consen 67 NVEASKSK 74 (346)
T ss_pred EEEecccc
Confidence 99988876
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=1.2e-10 Score=114.32 Aligned_cols=80 Identities=25% Similarity=0.412 Sum_probs=72.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHh-----CC-CeeCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL-----QG-YRMDED 248 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~L-----nG-~~~~g~ 248 (275)
..||||.|||+++||++|.++|++||.|..+.|+.++.+ +.++|+|||.|.+..+|..||.+. .| +.++|+
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T---~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDT---GHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCC---CCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 479999999999999999999999999999999999887 999999999999999999999877 34 778888
Q ss_pred CCCCccEEEEeccC
Q 023903 249 DPDSKFLRLQFSRN 262 (275)
Q Consensus 249 ~~~~~~LrV~~Ar~ 262 (275)
.|+|..|-.
T Consensus 369 -----~Lkv~~Av~ 377 (678)
T KOG0127|consen 369 -----LLKVTLAVT 377 (678)
T ss_pred -----EEeeeeccc
Confidence 588887643
No 53
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.11 E-value=1.4e-10 Score=117.43 Aligned_cols=80 Identities=24% Similarity=0.472 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
-++||||+.|+.+++|.+|..+|+.||.|.+|.++..+ +||||.+..+.+|++|+.+|..+.+..+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R---------~cAfI~M~~RqdA~kalqkl~n~kv~~k----- 485 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR---------GCAFIKMVRRQDAEKALQKLSNVKVADK----- 485 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC---------ceeEEEEeehhHHHHHHHHHhcccccce-----
Confidence 57899999999999999999999999999999998664 6999999999999999999999999887
Q ss_pred cEEEEeccCCCCCC
Q 023903 254 FLRLQFSRNPGPRS 267 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ 267 (275)
.|+|.|+...+++.
T Consensus 486 ~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 486 TIKIAWAVGKGPKS 499 (894)
T ss_pred eeEEeeeccCCcch
Confidence 79999999988775
No 54
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.4e-10 Score=108.97 Aligned_cols=81 Identities=22% Similarity=0.402 Sum_probs=76.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
|.|.|||..|++-+|+++|.-||+.||.|+.+.++.+..+ |.+.-||||+|++.+++++|.-.|++..|+.+
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~kt---gdsLqyaFiEFen~escE~AyFKMdNvLIDDr----- 309 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKT---GDSLQYAFIEFENKESCEQAYFKMDNVLIDDR----- 309 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccc---cchhheeeeeecchhhHHHHHhhhcceeeccc-----
Confidence 3699999999999999999999999999999999999876 99999999999999999999999999999998
Q ss_pred cEEEEeccC
Q 023903 254 FLRLQFSRN 262 (275)
Q Consensus 254 ~LrV~~Ar~ 262 (275)
.|.|.|+..
T Consensus 310 RIHVDFSQS 318 (479)
T KOG0415|consen 310 RIHVDFSQS 318 (479)
T ss_pred eEEeehhhh
Confidence 699999754
No 55
>smart00361 RRM_1 RNA recognition motif.
Probab=99.09 E-value=4.5e-10 Score=82.76 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=52.8
Q ss_pred HHHHHHHHc----CCCCEEEEE-EeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEEE
Q 023903 189 KREVAHIFR----PFVGYKEVR-LVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRL 257 (275)
Q Consensus 189 eeeL~~lFs----~fG~i~~vr-l~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~LrV 257 (275)
+++|+++|+ +||.|.+|. ++.++.+. .++++||+||+|.+.++|.+|++.|||..+.++ .|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~-~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr-----~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGY-ENHKRGNVYITFERSEDAARAIVDLNGRYFDGR-----TVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCC-CCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE-----EEEe
Confidence 678889998 999999995 55554321 277899999999999999999999999999998 5765
No 56
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.07 E-value=1.2e-09 Score=97.60 Aligned_cols=88 Identities=31% Similarity=0.520 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 172 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 172 p~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
++.-+||||.+||.++...||..||..|-+++.+.|...... +.-++.+|||.|.+...|.+|+++|||..|+-..
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~--~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~-- 106 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKG--DQVCKPVAFATFTSHQFALAAMNALNGVRFDPET-- 106 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCC--CccccceEEEEecchHHHHHHHHHhcCeeecccc--
Confidence 456799999999999999999999999999988766543321 1236689999999999999999999999998763
Q ss_pred CccEEEEeccCC
Q 023903 252 SKFLRLQFSRNP 263 (275)
Q Consensus 252 ~~~LrV~~Ar~~ 263 (275)
..+|+|++||..
T Consensus 107 ~stLhiElAKSN 118 (284)
T KOG1457|consen 107 GSTLHIELAKSN 118 (284)
T ss_pred CceeEeeehhcC
Confidence 247999999875
No 57
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.05 E-value=2.2e-10 Score=112.41 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=71.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEE
Q 023903 177 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 256 (275)
Q Consensus 177 tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~Lr 256 (275)
.|||+||.++++|++|+.+|++||.|..|.+..+..+ |.+|||+||+|.+.++|.+|+++|||..+-|+ .|+
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~t---G~skgfGfi~f~~~~~ar~a~e~lngfelAGr-----~ik 351 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSET---GRSKGFGFITFVNKEDARKALEQLNGFELAGR-----LIK 351 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeecccccc---ccccCcceEEEecHHHHHHHHHHhccceecCc-----eEE
Confidence 3999999999999999999999999999999988655 99999999999999999999999999999999 688
Q ss_pred EEeccC
Q 023903 257 LQFSRN 262 (275)
Q Consensus 257 V~~Ar~ 262 (275)
|.....
T Consensus 352 V~~v~~ 357 (549)
T KOG0147|consen 352 VSVVTE 357 (549)
T ss_pred EEEeee
Confidence 876543
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=3.9e-10 Score=102.87 Aligned_cols=85 Identities=25% Similarity=0.378 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+-|...-+|||++.||.+||.|.+|.+.+... |.+||||||.|.+..+|..||..|||....-. .+.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d----g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG--ASS 91 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD----GNSKGCAFVKFSSHAEAQAAINALHGSQTMPG--ASS 91 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC----CCCCCceEEEeccchHHHHHHHHhcccccCCC--Ccc
Confidence 358999999999999999999999999999999998764 89999999999999999999999999765443 234
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
.|.|.|+...+
T Consensus 92 SLVVK~ADTdk 102 (371)
T KOG0146|consen 92 SLVVKFADTDK 102 (371)
T ss_pred ceEEEeccchH
Confidence 69999987654
No 59
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.03 E-value=1.3e-09 Score=104.97 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=66.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||.|||+++|++.|++-|..||.|+.+.|+.. |++|| .|.|.++++|+.|+..|+|.+++++ .
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~------GkskG--VVrF~s~edAEra~a~Mngs~l~Gr-----~ 602 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN------GKSKG--VVRFFSPEDAERACALMNGSRLDGR-----N 602 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhcc------CCccc--eEEecCHHHHHHHHHHhccCcccCc-----e
Confidence 578999999999999999999999999999988533 77777 8999999999999999999999999 5
Q ss_pred EEEEec
Q 023903 255 LRLQFS 260 (275)
Q Consensus 255 LrV~~A 260 (275)
|+|.|.
T Consensus 603 I~V~y~ 608 (608)
T KOG4212|consen 603 IKVTYF 608 (608)
T ss_pred eeeeeC
Confidence 899874
No 60
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=2.3e-10 Score=108.02 Aligned_cols=77 Identities=19% Similarity=0.368 Sum_probs=72.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
-+++||+.|.+++.|+.|+..|.+||.|++|.+.++..+ +++||||||+|+-++.|..|++.|||..+.|+ .
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T---~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGR-----N 184 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPAT---GKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR-----N 184 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeeccccccc---ccccceEEEEEeCcHHHHHHHHHhccccccCc-----c
Confidence 377999999999999999999999999999999999887 99999999999999999999999999999999 4
Q ss_pred EEEEe
Q 023903 255 LRLQF 259 (275)
Q Consensus 255 LrV~~ 259 (275)
|+|..
T Consensus 185 iKVgr 189 (544)
T KOG0124|consen 185 IKVGR 189 (544)
T ss_pred ccccC
Confidence 78763
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=4.6e-10 Score=102.40 Aligned_cols=82 Identities=24% Similarity=0.507 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.|.|||-.||.+..+.||...|-+||.|++.++..|+.+ ..+|-|+||.|+++.+|..||.+|||+.|.-+
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRAT---NQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK----- 355 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRAT---NQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK----- 355 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcc---ccccceeeEecCCchhHHHHHHHhcchhhhhh-----
Confidence 4689999999999999999999999999999999999987 78899999999999999999999999999776
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|||+..|.+
T Consensus 356 RLKVQLKRPk 365 (371)
T KOG0146|consen 356 RLKVQLKRPK 365 (371)
T ss_pred hhhhhhcCcc
Confidence 6999998765
No 62
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.00 E-value=1.3e-09 Score=107.06 Aligned_cols=84 Identities=10% Similarity=0.190 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCC--C--------CHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 023903 174 ASSTLYVEGLPAD--S--------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 243 (275)
Q Consensus 174 ~~~tLfVgNLP~~--v--------teeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~ 243 (275)
++++|+|.||... + ..++|+++|++||.|+.|+|+.....+..+..+|++||+|.+.++|++|+..|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 5789999999632 1 23579999999999999999865322222566799999999999999999999999
Q ss_pred eeCCCCCCCccEEEEeccC
Q 023903 244 RMDEDDPDSKFLRLQFSRN 262 (275)
Q Consensus 244 ~~~g~~~~~~~LrV~~Ar~ 262 (275)
.|.|+ .|.|.|...
T Consensus 488 ~~~gr-----~v~~~~~~~ 501 (509)
T TIGR01642 488 KFNDR-----VVVAAFYGE 501 (509)
T ss_pred EECCe-----EEEEEEeCH
Confidence 99998 799998643
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.98 E-value=6.8e-10 Score=102.19 Aligned_cols=74 Identities=23% Similarity=0.335 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++.+|+|+||.+.|+.+||+..|++||.|++++|+++ |+||.|+-.++|..|++.||+.+|+|+
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-----------y~fvh~d~~eda~~air~l~~~~~~gk----- 140 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-----------YAFVHFDRAEDAVEAIRGLDNTEFQGK----- 140 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----------eeEEEEeeccchHHHHhcccccccccc-----
Confidence 5789999999999999999999999999999999865 899999999999999999999999999
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|+.+..+
T Consensus 141 ~m~vq~stsr 150 (346)
T KOG0109|consen 141 RMHVQLSTSR 150 (346)
T ss_pred eeeeeeeccc
Confidence 6999998764
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.96 E-value=1.6e-09 Score=104.21 Aligned_cols=77 Identities=21% Similarity=0.363 Sum_probs=70.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHc-CCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs-~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.+.+||.|||+++.+.+|++||. +.|+|..|.++.+.. ||++|||.|||.+++.+++|++.||.+.+.++
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~----GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR----- 114 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES----GKARGCAVVEFKDPENVQKALEKLNKYEVNGR----- 114 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC----CCcCCceEEEeeCHHHHHHHHHHhhhccccCc-----
Confidence 35699999999999999999998 568999999998875 99999999999999999999999999999999
Q ss_pred cEEEEec
Q 023903 254 FLRLQFS 260 (275)
Q Consensus 254 ~LrV~~A 260 (275)
+|+|.=.
T Consensus 115 ~l~vKEd 121 (608)
T KOG4212|consen 115 ELVVKED 121 (608)
T ss_pred eEEEecc
Confidence 6887543
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.95 E-value=1.1e-09 Score=94.99 Aligned_cols=85 Identities=12% Similarity=0.300 Sum_probs=74.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEE-EEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~v-rl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
...|||+||.++++|..|.++|+.||.+... +++++..+ |+++||+||.|.+.+.+.+|+..+||..+..+
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~t---g~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr----- 167 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDT---GNPKGFGFINYASFEASDAAIGSMNGQYLCNR----- 167 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccC---CCCCCCeEEechhHHHHHHHHHHhccchhcCC-----
Confidence 3689999999999999999999999998763 66666665 89999999999999999999999999999887
Q ss_pred cEEEEeccCCCCCC
Q 023903 254 FLRLQFSRNPGPRS 267 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ 267 (275)
+++|+|+++...++
T Consensus 168 ~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 168 PITVSYAFKKDTKG 181 (203)
T ss_pred ceEEEEEEecCCCc
Confidence 79999998875443
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=8e-10 Score=111.17 Aligned_cols=82 Identities=33% Similarity=0.454 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.++.|+|.|||+..+..+++.||..||.|+.|+|+.+... +.++|||||+|-++.+|..|+++|..+.+.|+
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k---~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGR----- 683 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGK---GAHRGFGFVDFLTPREAKNAFDALGSTHLYGR----- 683 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcc---hhhccceeeeccCcHHHHHHHHhhcccceech-----
Confidence 3678999999999999999999999999999999977332 66789999999999999999999999999999
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|.++||+..
T Consensus 684 rLVLEwA~~d 693 (725)
T KOG0110|consen 684 RLVLEWAKSD 693 (725)
T ss_pred hhheehhccc
Confidence 5999999864
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.93 E-value=2.4e-09 Score=94.25 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=70.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCC-CCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~f-G~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
...+||..+|.-+.|.+|...|.+| |.+..+++-+++.+ |.+||||||+|++++.|+-|.+.||+|.|.++
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrT---GNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~----- 120 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRT---GNSKGYAFVEFESEEVAKIAAETMNNYLLMEH----- 120 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeeccccc---CCcCceEEEEeccHHHHHHHHHHhhhhhhhhh-----
Confidence 4568999999999999999999999 66777788777765 99999999999999999999999999999998
Q ss_pred cEEEEeccC
Q 023903 254 FLRLQFSRN 262 (275)
Q Consensus 254 ~LrV~~Ar~ 262 (275)
.|.+.|-..
T Consensus 121 lL~c~vmpp 129 (214)
T KOG4208|consen 121 LLECHVMPP 129 (214)
T ss_pred eeeeEEeCc
Confidence 588877543
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=3.9e-09 Score=101.47 Aligned_cols=74 Identities=18% Similarity=0.341 Sum_probs=67.6
Q ss_pred EEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEEE
Q 023903 178 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRL 257 (275)
Q Consensus 178 LfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~LrV 257 (275)
|||.||+.+++.++|.++|+.||.|++|++..++. | +||| ||+|++++.|.+|++.|||..+.++ .|-|
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~----g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k-----ki~v 147 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN----G-SKGY-FVQFESEESAKKAIEKLNGMLLNGK-----KIYV 147 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC----C-ceee-EEEeCCHHHHHHHHHHhcCcccCCC-----eeEE
Confidence 99999999999999999999999999999998874 5 9999 9999999999999999999999998 4666
Q ss_pred EeccC
Q 023903 258 QFSRN 262 (275)
Q Consensus 258 ~~Ar~ 262 (275)
.....
T Consensus 148 g~~~~ 152 (369)
T KOG0123|consen 148 GLFER 152 (369)
T ss_pred eeccc
Confidence 55444
No 69
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=7.5e-09 Score=97.17 Aligned_cols=76 Identities=18% Similarity=0.348 Sum_probs=66.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~L-nG~~~~g~~~~~ 252 (275)
...||||++|...++|.+|+++|.+||+|+.|+++..+ +||||+|.+.++|+.|.+++ +-..|+|.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~---------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~---- 293 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK---------GCAFVTFTTREAAEKAAEKSFNKLVINGF---- 293 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc---------ccceeeehhhHHHHHHHHhhcceeeecce----
Confidence 35789999999999999999999999999999998765 59999999999999987664 55566776
Q ss_pred ccEEEEeccCC
Q 023903 253 KFLRLQFSRNP 263 (275)
Q Consensus 253 ~~LrV~~Ar~~ 263 (275)
.|+|.|++..
T Consensus 294 -Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 294 -RLKIKWGRPK 303 (377)
T ss_pred -EEEEEeCCCc
Confidence 6999999883
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=9.9e-09 Score=103.42 Aligned_cols=80 Identities=28% Similarity=0.373 Sum_probs=69.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEE
Q 023903 177 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 256 (275)
Q Consensus 177 tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~Lr 256 (275)
+|||.||++++|.++|..+|...|.|+.+.|...+....-=.+.||+||+|.+.++|..|+++|+|+.++|+ .|.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH-----~l~ 591 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH-----KLE 591 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCc-----eEE
Confidence 399999999999999999999999999998886653210023669999999999999999999999999999 699
Q ss_pred EEecc
Q 023903 257 LQFSR 261 (275)
Q Consensus 257 V~~Ar 261 (275)
|+++.
T Consensus 592 lk~S~ 596 (725)
T KOG0110|consen 592 LKISE 596 (725)
T ss_pred EEecc
Confidence 99987
No 71
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.75 E-value=2.7e-08 Score=90.44 Aligned_cols=80 Identities=21% Similarity=0.335 Sum_probs=72.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
..+|+|.|||..|++++|++||..|+.++.+-+..++. |.+.|+|-|.|...++|+.|++.+||..++|. +
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~----G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~-----~ 153 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA----GRSLGTADVSFNRRDDAERAVKKYNGVALDGR-----P 153 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC----CCCCccceeeecchHhHHHHHHHhcCcccCCc-----e
Confidence 47899999999999999999999999988888887775 99999999999999999999999999999998 5
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|+++....+
T Consensus 154 mk~~~i~~~ 162 (243)
T KOG0533|consen 154 MKIEIISSP 162 (243)
T ss_pred eeeEEecCc
Confidence 777765543
No 72
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.72 E-value=9.8e-09 Score=91.72 Aligned_cols=68 Identities=28% Similarity=0.546 Sum_probs=60.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
.|.||||.||..+|||++|+.+|+.|.++..++|..+. |.+ +|||+|++.+.|+.|+..|+|..+.-.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~-----g~~--vaf~~~~~~~~at~am~~lqg~~~s~~ 276 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG-----GMP--VAFADFEEIEQATDAMNHLQGNLLSSS 276 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC-----Ccc--eEeecHHHHHHHHHHHHHhhcceeccc
Confidence 68899999999999999999999999999888876543 554 899999999999999999999998655
No 73
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=7.9e-08 Score=92.47 Aligned_cols=74 Identities=24% Similarity=0.352 Sum_probs=68.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccE
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 255 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~L 255 (275)
..|||+ +++||.+|.++|+++|.|++|++-.+. + +.|||||.|.++++|++|++.||-..+.++ +|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-----slgy~yvnf~~~~da~~A~~~~n~~~~~~~-----~~ 67 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-----SLGYAYVNFQQPADAERALDTMNFDVLKGK-----PI 67 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-----ccceEEEecCCHHHHHHHHHHcCCcccCCc-----EE
Confidence 469999 899999999999999999999999876 3 789999999999999999999999999999 79
Q ss_pred EEEeccCC
Q 023903 256 RLQFSRNP 263 (275)
Q Consensus 256 rV~~Ar~~ 263 (275)
+|.|+...
T Consensus 68 rim~s~rd 75 (369)
T KOG0123|consen 68 RIMWSQRD 75 (369)
T ss_pred EeehhccC
Confidence 99998653
No 74
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.64 E-value=8.8e-08 Score=85.42 Aligned_cols=77 Identities=27% Similarity=0.622 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++||+.|||.+++.+.|..+|.+|.+.++|+++.... +.|||+|.+...|..|...|++..+.-.+
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~--------~iAfve~~~d~~a~~a~~~lq~~~it~~~---- 212 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS--------GIAFVEFLSDRQASAAQQALQGFKITKKN---- 212 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC--------ceeEEecchhhhhHHHhhhhccceeccCc----
Confidence 469999999999999999999999999999999997653 69999999999999999999999998543
Q ss_pred cEEEEeccC
Q 023903 254 FLRLQFSRN 262 (275)
Q Consensus 254 ~LrV~~Ar~ 262 (275)
+|+|.|+++
T Consensus 213 ~m~i~~a~K 221 (221)
T KOG4206|consen 213 TMQITFAKK 221 (221)
T ss_pred eEEecccCC
Confidence 799999864
No 75
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=4.6e-08 Score=87.44 Aligned_cols=72 Identities=24% Similarity=0.432 Sum_probs=65.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccE
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 255 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~L 255 (275)
..+||++||+.+.+++|.+||..||.|.++.|.. ||+||+|++..+|..|+..||+..|.+. .+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-----------gf~fv~fed~rda~Dav~~l~~~~l~~e-----~~ 65 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-----------GFGFVEFEDPRDADDAVHDLDGKELCGE-----RL 65 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-----------ccceeccCchhhhhcccchhcCceecce-----ee
Confidence 3689999999999999999999999999887753 5899999999999999999999999988 48
Q ss_pred EEEeccCC
Q 023903 256 RLQFSRNP 263 (275)
Q Consensus 256 rV~~Ar~~ 263 (275)
.|+|++..
T Consensus 66 vve~~r~~ 73 (216)
T KOG0106|consen 66 VVEHARGK 73 (216)
T ss_pred eeeccccc
Confidence 99999864
No 76
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.60 E-value=9.3e-08 Score=86.53 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=72.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
...+||+|+.+.+|.+++...|+.||.|..|.|..++.. +++|||+||+|.+.+.++.|+. ||+..|.+. .
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~---~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~-----~ 171 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFR---GHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP-----A 171 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccC---CCcceeEEEecccHhhhHHHhh-cCCcccccc-----c
Confidence 578999999999999999999999999999999988875 7899999999999999999998 999999998 5
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
++|.+.+-.
T Consensus 172 i~vt~~r~~ 180 (231)
T KOG4209|consen 172 IEVTLKRTN 180 (231)
T ss_pred ceeeeeeee
Confidence 888877654
No 77
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=2e-08 Score=89.43 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=68.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
..||||+|+-..++|+-|.+||-+-|.|.+|.|...+. ++.| ||||+|.++....-|++.+||.++.++ .
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d----~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~-----e 78 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD----QEQK-FAYVFFPNENSVQLAGQLENGDDLEED-----E 78 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc----CCCc-eeeeecccccchhhhhhhcccchhccc-----h
Confidence 58999999999999999999999999999999987765 6777 999999999999999999999999988 4
Q ss_pred EEEEec
Q 023903 255 LRLQFS 260 (275)
Q Consensus 255 LrV~~A 260 (275)
++|++-
T Consensus 79 ~q~~~r 84 (267)
T KOG4454|consen 79 EQRTLR 84 (267)
T ss_pred hhcccc
Confidence 666653
No 78
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.57 E-value=2e-07 Score=87.69 Aligned_cols=83 Identities=20% Similarity=0.259 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEE--------EEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 023903 172 PDASSTLYVEGLPADSTKREVAHIFRPFVGYK--------EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 243 (275)
Q Consensus 172 p~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~--------~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~ 243 (275)
+.-+..|||+|||.++|-+++.++|++||.|. .|+|..++. |+.||=|.+.|--.++.+.|++.|++.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~----G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ----GKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC----CCccCceEEEeecccHHHHHHHHhCcc
Confidence 33456699999999999999999999999886 478877764 999999999999999999999999999
Q ss_pred eeCCCCCCCccEEEEeccCC
Q 023903 244 RMDEDDPDSKFLRLQFSRNP 263 (275)
Q Consensus 244 ~~~g~~~~~~~LrV~~Ar~~ 263 (275)
.|.|+ .|+|+-|++.
T Consensus 207 ~~rg~-----~~rVerAkfq 221 (382)
T KOG1548|consen 207 ELRGK-----KLRVERAKFQ 221 (382)
T ss_pred cccCc-----EEEEehhhhh
Confidence 99998 6999999875
No 79
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.56 E-value=2.7e-07 Score=87.14 Aligned_cols=82 Identities=18% Similarity=0.334 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEE--------EEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYK--------EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 245 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~--------~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~ 245 (275)
.+.+|||.+||..+++++|.++|.+++.|+ .|+|-+++.+ +++||-|.|.|++..+|+.|+..+++..|
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT---~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKET---GAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccc---cCcCCceeeeecChhhhhhhhhhhccccc
Confidence 368999999999999999999999999886 3566666654 99999999999999999999999999999
Q ss_pred CCCCCCCccEEEEeccCC
Q 023903 246 DEDDPDSKFLRLQFSRNP 263 (275)
Q Consensus 246 ~g~~~~~~~LrV~~Ar~~ 263 (275)
.++ +|+|.+|...
T Consensus 142 ~gn-----~ikvs~a~~r 154 (351)
T KOG1995|consen 142 CGN-----TIKVSLAERR 154 (351)
T ss_pred cCC-----Cchhhhhhhc
Confidence 997 7999888764
No 80
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.55 E-value=7.6e-08 Score=90.50 Aligned_cols=71 Identities=23% Similarity=0.386 Sum_probs=62.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
..++|||++|+|+++++.|++.|++||.|.++.++++..+ ++++||+||+|+++++..+++.. .-+.|+++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t---~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr 75 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPST---GRSRGFGFVTFATPEGVDAVLNA-RTHKLDGR 75 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCC---CCcccccceecCCCcchheeecc-cccccCCc
Confidence 4689999999999999999999999999999999999876 99999999999999998888753 33445555
No 81
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=6.7e-08 Score=95.35 Aligned_cols=67 Identities=25% Similarity=0.329 Sum_probs=61.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
+..+|+|-|||..|++++|..+|+.||+|++|+.-..+ +|.+||+|.|..+|++|+++|++..|.++
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~--------~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK--------RGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc--------CceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 57899999999999999999999999999998766544 36899999999999999999999999988
No 82
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.50 E-value=2.6e-07 Score=93.39 Aligned_cols=83 Identities=24% Similarity=0.284 Sum_probs=71.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
++.|||+||++.++|+.|...|..||.|..|+|+.-++.-...+.+-|+||.|-+..+|++|++.|||..+... .
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~-----e 248 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY-----E 248 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee-----e
Confidence 57799999999999999999999999999999886543111133456999999999999999999999999988 6
Q ss_pred EEEEeccC
Q 023903 255 LRLQFSRN 262 (275)
Q Consensus 255 LrV~~Ar~ 262 (275)
|++-|++.
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 99999964
No 83
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.49 E-value=2.2e-07 Score=92.11 Aligned_cols=81 Identities=16% Similarity=0.331 Sum_probs=71.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.+.|||.+|...+.-.+|+.||++||.|+-.+++++-.+ ++ .+-|+||++.+.++|.+||+.||-+.+.|+ .
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRs-PG--aRCYGfVTMSts~eAtkCI~hLHrTELHGr-----m 476 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARS-PG--ARCYGFVTMSTSAEATKCIEHLHRTELHGR-----M 476 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCC-CC--cceeEEEEecchHHHHHHHHHhhhhhhcce-----e
Confidence 457999999999999999999999999999999987543 22 345999999999999999999999999999 6
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|.|+-+++.
T Consensus 477 ISVEkaKNE 485 (940)
T KOG4661|consen 477 ISVEKAKNE 485 (940)
T ss_pred eeeeecccC
Confidence 999999875
No 84
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.49 E-value=2.2e-07 Score=88.07 Aligned_cols=81 Identities=14% Similarity=0.302 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.-++|||..+.++.+|+||+.+|+-||.|++|.+...... +.+|||+||+|.+...-..|+..||=+.+.|+
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~---~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQ----- 280 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG---RGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ----- 280 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCC---CCccceeeEEeccccchHHHhhhcchhhcccc-----
Confidence 4678999999999999999999999999999999988764 78999999999999999999999999999888
Q ss_pred cEEEEeccC
Q 023903 254 FLRLQFSRN 262 (275)
Q Consensus 254 ~LrV~~Ar~ 262 (275)
-|+|--+-.
T Consensus 281 yLRVGk~vT 289 (544)
T KOG0124|consen 281 YLRVGKCVT 289 (544)
T ss_pred eEecccccC
Confidence 588765543
No 85
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.45 E-value=1.6e-06 Score=68.61 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=70.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCC--CCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 176 STLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~f--G~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+||-|.|||...|.++|.+++... |.+.-+-++.|..+ +-+.|||||.|.+++.|.+-.+.++|..+.... ..+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~---~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~-s~K 77 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKN---KCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFN-SKK 77 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccC---CCceEEEEEEcCCHHHHHHHHHHHcCCccccCC-CCc
Confidence 689999999999999999887653 66666777777654 678899999999999999999999999997553 234
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
+..|.||+-.+
T Consensus 78 vc~i~yAriQG 88 (97)
T PF04059_consen 78 VCEISYARIQG 88 (97)
T ss_pred EEEEehhHhhC
Confidence 78999998754
No 86
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.43 E-value=6.9e-07 Score=87.08 Aligned_cols=79 Identities=28% Similarity=0.468 Sum_probs=62.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
...+|||.|||+++++++|+++|++||.|++..|..... +++...|+||+|.+.+++..|+++- -..+.++
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~---~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~----- 357 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSP---GGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGR----- 357 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEecc---CCCcCceEEEEEeecchhhhhhhcC-ccccCCe-----
Confidence 455699999999999999999999999999988876542 2444479999999999999999764 4444444
Q ss_pred cEEEEecc
Q 023903 254 FLRLQFSR 261 (275)
Q Consensus 254 ~LrV~~Ar 261 (275)
.|.|+=-+
T Consensus 358 kl~Veek~ 365 (419)
T KOG0116|consen 358 KLNVEEKR 365 (419)
T ss_pred eEEEEecc
Confidence 46665543
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.40 E-value=1.4e-06 Score=83.69 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=70.5
Q ss_pred CCEEEEcCCCCC-CCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 175 SSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 175 ~~tLfVgNLP~~-vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++.|.|.||..+ +|.+.|..||.-||+|.+|+|+.++.. -|.|++.+...|+-|++.|+|.++.|+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd--------~ALIQmsd~~qAqLA~~hL~g~~l~gk----- 363 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD--------NALIQMSDGQQAQLAMEHLEGHKLYGK----- 363 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc--------ceeeeecchhHHHHHHHHhhcceecCc-----
Confidence 688999999876 999999999999999999999987742 699999999999999999999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|.++|..
T Consensus 364 ~lrvt~SKH~ 373 (492)
T KOG1190|consen 364 KLRVTLSKHT 373 (492)
T ss_pred eEEEeeccCc
Confidence 6999999986
No 88
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.32 E-value=5.5e-07 Score=81.86 Aligned_cols=72 Identities=17% Similarity=0.358 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
..-+||++-|..+++++.|...|++|-.+...++++++.+ |++|||+||.|.+++++..|+..|+|..+..+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRT---gKSkgygfVSf~~pad~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRT---GKSKGYGFVSFRDPADYVRAMREMNGKYVGSR 260 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccc---cccccceeeeecCHHHHHHHHHhhcccccccc
Confidence 3567999999999999999999999999999999999876 99999999999999999999999999998776
No 89
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.31 E-value=7.9e-07 Score=83.68 Aligned_cols=80 Identities=16% Similarity=0.303 Sum_probs=67.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
...+|||++||.++++++|++.|.+||.|..+.++.++.+ .+++||+||.|++++.+.+++. ..-+.|.++
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~---~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk----- 166 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTT---SRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGK----- 166 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccc---cccccceeeEeccccccceecc-cceeeecCc-----
Confidence 4679999999999999999999999999999988888776 8899999999999999999874 466677776
Q ss_pred cEEEEeccC
Q 023903 254 FLRLQFSRN 262 (275)
Q Consensus 254 ~LrV~~Ar~ 262 (275)
.+.|.-|-+
T Consensus 167 ~vevkrA~p 175 (311)
T KOG4205|consen 167 KVEVKRAIP 175 (311)
T ss_pred eeeEeeccc
Confidence 356655544
No 90
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.07 E-value=6.3e-05 Score=71.89 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 174 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP~~-vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
+.+.+-|-+|... ++-+.|..||..||.|.+|++++.+. |-|.|++.+..+.++|+..||+..+.|.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~--------gtamVemgd~~aver~v~hLnn~~lfG~---- 353 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP--------GTAMVEMGDAYAVERAVTHLNNIPLFGG---- 353 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc--------ceeEEEcCcHHHHHHHHHHhccCccccc----
Confidence 3588999999976 77888999999999999999998765 6899999999999999999999999988
Q ss_pred ccEEEEeccCC
Q 023903 253 KFLRLQFSRNP 263 (275)
Q Consensus 253 ~~LrV~~Ar~~ 263 (275)
.|.|.+++..
T Consensus 354 -kl~v~~SkQ~ 363 (494)
T KOG1456|consen 354 -KLNVCVSKQN 363 (494)
T ss_pred -eEEEeecccc
Confidence 5999999875
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.04 E-value=4.5e-06 Score=82.74 Aligned_cols=83 Identities=25% Similarity=0.476 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 172 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 172 p~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
+...+.+||++||...++++++++...||.++..+++.+..+ |.+|||||.+|.+......|+..|||+.+.++
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~---g~skg~af~ey~dpsvtd~A~agLnGm~lgd~--- 359 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT---GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK--- 359 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc---ccccceeeeeeeCCcchhhhhcccchhhhcCc---
Confidence 335678999999999999999999999999999999988875 89999999999999999999999999999888
Q ss_pred CccEEEEeccC
Q 023903 252 SKFLRLQFSRN 262 (275)
Q Consensus 252 ~~~LrV~~Ar~ 262 (275)
.|.|+.|-.
T Consensus 360 --~lvvq~A~~ 368 (500)
T KOG0120|consen 360 --KLVVQRAIV 368 (500)
T ss_pred --eeEeehhhc
Confidence 588888753
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.04 E-value=2.4e-05 Score=60.34 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=48.1
Q ss_pred CEEEEcCCCCCCCHHH----HHHHHcCCCC-EEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 176 STLYVEGLPADSTKRE----VAHIFRPFVG-YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 176 ~tLfVgNLP~~vteee----L~~lFs~fG~-i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
..|||.|||.+.+... |+.|+..+|+ |.+| . . +.|+|.|.+.+.|++|.+.|+|..+.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-~----------~tAilrF~~~~~A~RA~KRmegEdVfG~-- 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-G----------GTAILRFPNQEFAERAQKRMEGEDVFGN-- 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----T----------T-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-C----------CEEEEEeCCHHHHHHHHHhhcccccccc--
Confidence 4699999999988664 6788889977 2222 1 1 4799999999999999999999999999
Q ss_pred CCccEEEEeccCC
Q 023903 251 DSKFLRLQFSRNP 263 (275)
Q Consensus 251 ~~~~LrV~~Ar~~ 263 (275)
.|.|+|....
T Consensus 68 ---kI~v~~~~~~ 77 (90)
T PF11608_consen 68 ---KISVSFSPKN 77 (90)
T ss_dssp -----EEESS--S
T ss_pred ---eEEEEEcCCc
Confidence 5999998543
No 93
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.01 E-value=0.00017 Score=73.46 Aligned_cols=70 Identities=23% Similarity=0.385 Sum_probs=59.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEE-EEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYK-EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~-~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
++.|-|.|+|++++-+||.++|..|-.+- +|++...++ |++.|-|.|.|++.++|..|...|++.+|..+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~----G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr 937 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDD----GVPTGECMVAFESQEEARRASMDLDGQKIRNR 937 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCC----CCcccceeEeecCHHHHHhhhhccccCcccce
Confidence 45788999999999999999999996654 344444443 88999999999999999999999999999877
No 94
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.99 E-value=2.6e-05 Score=74.48 Aligned_cols=79 Identities=19% Similarity=0.244 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCC--CCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 174 ASSTLYVEGLPA--DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~--~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
+++.|.+.-|+. -+|-+.|..|+...|.|.+|.|+++. | ..|.|||++.+.|++|+.+|||..|.-.-+
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----g---VQAmVEFdsv~~AqrAk~alNGADIYsGCC- 189 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----G---VQAMVEFDSVEVAQRAKAALNGADIYSGCC- 189 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----c---eeeEEeechhHHHHHHHhhcccccccccce-
Confidence 467777776654 48999999999999999999998664 2 479999999999999999999999976644
Q ss_pred CccEEEEeccCC
Q 023903 252 SKFLRLQFSRNP 263 (275)
Q Consensus 252 ~~~LrV~~Ar~~ 263 (275)
+|||+|||..
T Consensus 190 --TLKIeyAkP~ 199 (494)
T KOG1456|consen 190 --TLKIEYAKPT 199 (494)
T ss_pred --eEEEEecCcc
Confidence 8999999864
No 95
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.97 E-value=1.5e-05 Score=76.70 Aligned_cols=78 Identities=21% Similarity=0.329 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++.||+..|+|.+++||+|+++|..-|..++......+ .+-+|.+.+++.++|..|+..++.+.+.+..
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k-------d~kmal~q~~sveeA~~ali~~hnh~lgen~---- 481 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK-------DRKMALPQLESVEEAIQALIDLHNHYLGENH---- 481 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC-------CcceeecccCChhHhhhhccccccccCCCCc----
Confidence 57899999999999999999999999887655443322 1239999999999999999999999998875
Q ss_pred cEEEEeccC
Q 023903 254 FLRLQFSRN 262 (275)
Q Consensus 254 ~LrV~~Ar~ 262 (275)
.|||+|++.
T Consensus 482 hlRvSFSks 490 (492)
T KOG1190|consen 482 HLRVSFSKS 490 (492)
T ss_pred eEEEEeecc
Confidence 699999985
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.84 E-value=3.9e-05 Score=75.28 Aligned_cols=66 Identities=21% Similarity=0.368 Sum_probs=53.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
.-|-+.+|||+||++||.++|+.+ .|..+.+.+.. |++.|-|||+|.+++++++|++ .|-..+..+
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~-----Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~R 76 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRN-----GRPSGEAYVEFTSEEDVEKALK-KDRESMGHR 76 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccC-----CCcCcceEEEeechHHHHHHHH-hhHHHhCCc
Confidence 456678999999999999999998 47776666543 8888999999999999999996 355544443
No 97
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.78 E-value=2.7e-05 Score=72.67 Aligned_cols=81 Identities=26% Similarity=0.297 Sum_probs=71.5
Q ss_pred CCCEEE-EcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 174 ASSTLY-VEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 174 ~~~tLf-VgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
...++| |++|++++++++|+..|..++.|..+++.....+ +.++||++|+|.+...+..|+.. +...+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s---~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~---- 254 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEES---GDSKGFAYVDFSAGNSKKLALND-QTRSIGGR---- 254 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCc---cchhhhhhhhhhhchhHHHHhhc-ccCcccCc----
Confidence 345566 9999999999999999999999999999988765 99999999999999999999877 77777776
Q ss_pred ccEEEEeccCC
Q 023903 253 KFLRLQFSRNP 263 (275)
Q Consensus 253 ~~LrV~~Ar~~ 263 (275)
+++|.+....
T Consensus 255 -~~~~~~~~~~ 264 (285)
T KOG4210|consen 255 -PLRLEEDEPR 264 (285)
T ss_pred -ccccccCCCC
Confidence 7999998775
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.74 E-value=7.9e-05 Score=59.62 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=39.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 243 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~ 243 (275)
..|+|.+++..++.++|+++|++|+.|..|.+..... -|||-|.+++.|++|+.++.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~---------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT---------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S---------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC---------EEEEEECCcchHHHHHHHHHhc
Confidence 4789999999999999999999999999988876543 6999999999999999887655
No 99
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.69 E-value=1.6e-05 Score=78.80 Aligned_cols=80 Identities=19% Similarity=0.288 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..+|+|+-.|...+++.+|.++|+.+|.|..|++|.++.+ +.+||.|||+|.+.+....|+ +|.|..+.|.
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s---~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~----- 248 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNS---RRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGV----- 248 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccc---hhhcceeEEEEecccchhhHh-hhcCCcccCc-----
Confidence 5678999999999999999999999999999999999876 889999999999999999998 8999999998
Q ss_pred cEEEEeccC
Q 023903 254 FLRLQFSRN 262 (275)
Q Consensus 254 ~LrV~~Ar~ 262 (275)
+|.|+....
T Consensus 249 pv~vq~sEa 257 (549)
T KOG0147|consen 249 PVIVQLSEA 257 (549)
T ss_pred eeEecccHH
Confidence 788877543
No 100
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00012 Score=73.12 Aligned_cols=78 Identities=22% Similarity=0.337 Sum_probs=64.9
Q ss_pred CCCEEEEcCCCCCCC------HHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 023903 174 ASSTLYVEGLPADST------KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 247 (275)
Q Consensus 174 ~~~tLfVgNLP~~vt------eeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g 247 (275)
-.+.|+|.|+|.--. +.-|..+|+++|.|..+.++.+.. |.++||.|++|.+..+|..|++.|||+.++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~----ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE----GGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc----CCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 357899999996422 235778999999999998887775 6799999999999999999999999999998
Q ss_pred CCCCCccEEEEe
Q 023903 248 DDPDSKFLRLQF 259 (275)
Q Consensus 248 ~~~~~~~LrV~~ 259 (275)
++ ++.|..
T Consensus 133 nH----tf~v~~ 140 (698)
T KOG2314|consen 133 NH----TFFVRL 140 (698)
T ss_pred cc----eEEeeh
Confidence 86 566643
No 101
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.58 E-value=9.7e-05 Score=71.57 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=56.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeec---CcccCCCCc-------ceEEEEEeCCHHHHHHHHHHhCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK---ESKLRGGDP-------LILCFVDFENPACAATALSALQGY 243 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~---~~~~~~G~s-------kGfaFVeF~~~~~A~~Al~~LnG~ 243 (275)
+++||.+.|||.+-.-+.|.+||+.+|.|+.|+|..- ....++..+ +-||||+|+..+.|.+|.+.|+-.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6799999999999888999999999999999998754 221111222 568999999999999999888543
No 102
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.48 E-value=0.0004 Score=68.32 Aligned_cols=69 Identities=22% Similarity=0.373 Sum_probs=52.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEE-EEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~-vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
..+|-+.+||+.|||+||.++|+-.--+.. |.++.+.. +++.|-|||+|++.+.|++|+.. |-..|..+
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r----gR~tGEAfVqF~sqe~ae~Al~r-hre~iGhR 172 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR----GRPTGEAFVQFESQESAEIALGR-HRENIGHR 172 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC----CCcccceEEEecCHHHHHHHHHH-HHHhhccc
Confidence 367888999999999999999998744433 44554543 78889999999999999999864 44444433
No 103
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.48 E-value=7.6e-05 Score=66.94 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=60.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..+.|+|.||+..+.+.+|.+.|+++|.+....+ .. .++||+|...++|..|+..|++..+.++
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~---------~~~~v~Fs~~~da~ra~~~l~~~~~~~~----- 161 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RR---------NFAFVEFSEQEDAKRALEKLDGKKLNGR----- 161 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hc---------cccceeehhhhhhhhcchhccchhhcCc-----
Confidence 3578999999999999999999999999854443 11 4899999999999999999999999998
Q ss_pred cEEEEe
Q 023903 254 FLRLQF 259 (275)
Q Consensus 254 ~LrV~~ 259 (275)
.|++.+
T Consensus 162 ~l~~~~ 167 (216)
T KOG0106|consen 162 RISVEK 167 (216)
T ss_pred eeeecc
Confidence 577744
No 104
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.44 E-value=0.00012 Score=69.61 Aligned_cols=80 Identities=10% Similarity=0.178 Sum_probs=66.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCC--CEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG--~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
.-++||+||-|++|+++|.+.....| .|.+++++.++.. |.+||||+|...+.+..++-++.|--+.|.|+.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~N---GQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~--- 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTN---GQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS--- 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccC---CcccceEEEEecchHHHHHHHHhcccceecCCC---
Confidence 35799999999999999988877664 4567777777654 999999999999999999999999999999986
Q ss_pred ccEEEEecc
Q 023903 253 KFLRLQFSR 261 (275)
Q Consensus 253 ~~LrV~~Ar 261 (275)
+..+.|.|
T Consensus 154 -P~V~~~NK 161 (498)
T KOG4849|consen 154 -PTVLSYNK 161 (498)
T ss_pred -Ceeeccch
Confidence 45555544
No 105
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.25 E-value=0.00064 Score=47.78 Aligned_cols=52 Identities=17% Similarity=0.288 Sum_probs=41.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHH
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 237 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al 237 (275)
+.|-|.+.+.+..+..|. .|.+||+|.++.+.... -+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~~~---------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVPEST---------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcCCCC---------cEEEEEECCHHHHHhhC
Confidence 567888988876655555 88899999998876332 28999999999999985
No 106
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.13 E-value=0.0014 Score=62.18 Aligned_cols=82 Identities=18% Similarity=0.347 Sum_probs=62.2
Q ss_pred CCEEEEcCCCCCCCHHH----H--HHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 175 SSTLYVEGLPADSTKRE----V--AHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 175 ~~tLfVgNLP~~vteee----L--~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
.+-+||-+||+.+..++ | .+.|.+||.|++|.+-++.....+-.+.---||+|.+.++|.+||.+.+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 46789999999987776 3 37899999999987765432111011111139999999999999999999999999
Q ss_pred CCCCccEEEEecc
Q 023903 249 DPDSKFLRLQFSR 261 (275)
Q Consensus 249 ~~~~~~LrV~~Ar 261 (275)
.|+..|..
T Consensus 194 -----~lkatYGT 201 (480)
T COG5175 194 -----VLKATYGT 201 (480)
T ss_pred -----eEeeecCc
Confidence 69998864
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.002 Score=63.78 Aligned_cols=66 Identities=29% Similarity=0.334 Sum_probs=49.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcce---EEEEEeCCHHHHHHHHHHh
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLI---LCFVDFENPACAATALSAL 240 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skG---faFVeF~~~~~A~~Al~~L 240 (275)
-+++||||+||++++|++|...|..||.+. |....+...+..--+|| |.|+.|+++.....-+.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 577899999999999999999999999865 44442222111122667 9999999998877765543
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.0045 Score=61.40 Aligned_cols=67 Identities=31% Similarity=0.318 Sum_probs=57.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHc-CCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHH
Q 023903 170 LPPDASSTLYVEGLPADSTKREVAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 239 (275)
Q Consensus 170 ~pp~~~~tLfVgNLP~~vteeeL~~lFs-~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~ 239 (275)
.+-++.+|||||+||.-++-+||..||. -||.|+.+-|-+|.+- .=+||-+=|+|.+..+-.+||.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~---KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL---KYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc---CCCCCcceeeecccHHHHHHHhh
Confidence 3445789999999999999999999999 8999999988877332 45789999999999998888864
No 109
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.76 E-value=0.00067 Score=70.43 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=67.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
...|||.|+|+.+|.++|+.||..+|.+..++++..+. |++||.|||.|.++.+|..+....+...+..+ .
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~----gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~-----~ 806 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA----GKPKGKARVDYNTEADASRKVASVDVAGKREN-----N 806 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc----cccccceeccCCCcchhhhhcccchhhhhhhc-----C
Confidence 35689999999999999999999999999999887664 99999999999999999999988888877777 3
Q ss_pred EEEEecc
Q 023903 255 LRLQFSR 261 (275)
Q Consensus 255 LrV~~Ar 261 (275)
+.|+.+.
T Consensus 807 ~~v~vsn 813 (881)
T KOG0128|consen 807 GEVQVSN 813 (881)
T ss_pred ccccccC
Confidence 5666643
No 110
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.72 E-value=0.0016 Score=62.67 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=57.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
..|-|.||.+.+|.++++.||...|.|.+++|......-+--...-.|||.|.|..++..|- .|..++|-++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdr 79 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDR 79 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeee
Confidence 47899999999999999999999999999999874321111223358999999999988884 6788887776
No 111
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.70 E-value=0.014 Score=51.56 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=57.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 247 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g 247 (275)
...+.|.+||...++++|+++..+-|.|+...+.++ |.+.|+|...++-+-|+..|+..++.-
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc----------cceeeeeeehhhHHHHHHhhccccccC
Confidence 467999999999999999999999999998888765 478999999999999999999888754
No 112
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.65 E-value=0.0057 Score=61.07 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=49.6
Q ss_pred HHHHHHcCCCCEEEEEEeec-CcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEEEEec
Q 023903 191 EVAHIFRPFVGYKEVRLVIK-ESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 260 (275)
Q Consensus 191 eL~~lFs~fG~i~~vrl~~~-~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~LrV~~A 260 (275)
+++.-+.+||.|+.|.+... ...+. .-..|.-||+|.+.+++++|+++|+|.+|.++ ++..+|-
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~-~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR-----tVvtsYy 489 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENP-VPGTGKVFVEFADTEDSQRAMEELTGRKFANR-----TVVASYY 489 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCc-CCCcccEEEEecChHHHHHHHHHccCceeCCc-----EEEEEec
Confidence 34556788999999998876 22111 22346789999999999999999999999998 6776663
No 113
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.64 E-value=0.011 Score=45.67 Aligned_cols=55 Identities=18% Similarity=0.356 Sum_probs=42.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 241 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~Ln 241 (275)
...+||. .|.+....||.+||+.||.|. |..+.+. -|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT----------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT----------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT----------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC----------cEEEEeecHHHHHHHHHHhc
Confidence 3556666 999999999999999999865 6666553 59999999999999999886
No 114
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.49 E-value=0.0019 Score=59.12 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=60.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCccc-----CCCC----cceEEEEEeCCHHHHHHHHHHhCCCee
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKL-----RGGD----PLILCFVDFENPACAATALSALQGYRM 245 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~-----~~G~----skGfaFVeF~~~~~A~~Al~~LnG~~~ 245 (275)
+-.||+++||+.+.-.-|++||++||.|-.|.+-...... ..|. .---+.|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4679999999999999999999999999998887654320 0111 112357999999999999999999999
Q ss_pred CCCC
Q 023903 246 DEDD 249 (275)
Q Consensus 246 ~g~~ 249 (275)
.|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9985
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.46 E-value=0.012 Score=56.73 Aligned_cols=59 Identities=32% Similarity=0.392 Sum_probs=48.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHcCC----CCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHH
Q 023903 177 TLYVEGLPADSTKREVAHIFRPF----VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 239 (275)
Q Consensus 177 tLfVgNLP~~vteeeL~~lFs~f----G~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~ 239 (275)
.|-..+||+++++.++.++|.+- +..+.|.+++... |+..|-|||.|..+++|..|+.+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd----grpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD----GRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC----CCcccceEEEecCHHHHHHHHHH
Confidence 45568999999999999999642 3556677776543 88889999999999999999854
No 116
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.45 E-value=0.0044 Score=64.93 Aligned_cols=79 Identities=20% Similarity=0.346 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+++.+||++|..++....|...|..||.|..|.+-. |. .||+|.|++...|..|++.|-|..|.+-..
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-------gq--~yayi~yes~~~aq~a~~~~rgap~G~P~~--- 521 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-------GQ--PYAYIQYESPPAAQAATHDMRGAPLGGPPR--- 521 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-------CC--cceeeecccCccchhhHHHHhcCcCCCCCc---
Confidence 468899999999999999999999999999877643 33 399999999999999999999999987632
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
.|+|.|+..++
T Consensus 522 r~rvdla~~~~ 532 (975)
T KOG0112|consen 522 RLRVDLASPPG 532 (975)
T ss_pred ccccccccCCC
Confidence 59999998764
No 117
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.36 E-value=0.01 Score=56.41 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=55.9
Q ss_pred CCCEEEEcCCC----CCCC-------HHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 023903 174 ASSTLYVEGLP----ADST-------KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 242 (275)
Q Consensus 174 ~~~tLfVgNLP----~~vt-------eeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG 242 (275)
..+||.+.||= ++.+ +++|.+-+++||.|.+|.|.-. .+.|.+.|.|.+.+.|..||+.|+|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~-------hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR-------HPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc-------CCCceeEEEeCChHHHHHHHHHhcC
Confidence 46889999973 2233 4466677999999999987643 3458999999999999999999999
Q ss_pred CeeCCCC
Q 023903 243 YRMDEDD 249 (275)
Q Consensus 243 ~~~~g~~ 249 (275)
..|+|++
T Consensus 337 R~fdgRq 343 (382)
T KOG1548|consen 337 RWFDGRQ 343 (382)
T ss_pred eeecceE
Confidence 9999994
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.32 E-value=0.0061 Score=58.79 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=58.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCC-EE--EEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVG-YK--EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~-i~--~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
..+|-+.+||...+.++|-++|..|-. |+ -|+|+.+.. |++.|-|||+|.+.+.|..|....+.+....+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q----GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~R 352 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ----GRPSGEAFIQMRNAERARAAAQKCHKKLMKSR 352 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC----CCcChhhhhhhhhhHHHHHHHHHHHHhhcccc
Confidence 578889999999999999999998854 33 377777654 88889999999999999999988887776555
No 119
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.07 E-value=0.0069 Score=61.14 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=62.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCC-CCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~f-G~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
+++.|||.||-.-.|.-+|+.|+..- |.|.+. +| ++- |--|||.|.+.++|.+.+.+|||..+-..++
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-DkI-------KShCyV~yss~eEA~atr~AlhnV~WP~sNP-- 511 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DKI-------KSHCYVSYSSVEEAAATREALHNVQWPPSNP-- 511 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-HH-HHh-------hcceeEecccHHHHHHHHHHHhccccCCCCC--
Confidence 68999999999999999999999954 545555 33 322 2369999999999999999999999976643
Q ss_pred ccEEEEeccC
Q 023903 253 KFLRLQFSRN 262 (275)
Q Consensus 253 ~~LrV~~Ar~ 262 (275)
+.|-+.|...
T Consensus 512 K~L~adf~~~ 521 (718)
T KOG2416|consen 512 KHLIADFVRA 521 (718)
T ss_pred ceeEeeecch
Confidence 3688888764
No 120
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.89 E-value=0.029 Score=40.92 Aligned_cols=54 Identities=22% Similarity=0.371 Sum_probs=44.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCC---CCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHh
Q 023903 176 STLYVEGLPADSTKREVAHIFRPF---VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL 240 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~f---G~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~L 240 (275)
.+|+|.++.. ++.++|+..|..| .....|..+.+. -|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt----------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT----------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC----------cEEEEECCHHHHHHHHHcC
Confidence 6899999864 7888899999988 234578888765 4889999999999999765
No 121
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.83 E-value=0.021 Score=49.64 Aligned_cols=89 Identities=11% Similarity=0.165 Sum_probs=56.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcC-CCCE---EEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRP-FVGY---KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 249 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~-fG~i---~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~ 249 (275)
...+|.|.+||+++||+++.+.+++ ++.. ..+.-........ -....-|+|.|.+.+++..-++.++|+.|.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~-~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFK-PPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSST-TS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCC-CCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 3568999999999999999998887 6665 3343122221111 112357999999999999999999999997775
Q ss_pred CCCccEEEEeccCC
Q 023903 250 PDSKFLRLQFSRNP 263 (275)
Q Consensus 250 ~~~~~LrV~~Ar~~ 263 (275)
....+-.|+||-+.
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 44446678888664
No 122
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.77 E-value=0.029 Score=47.57 Aligned_cols=55 Identities=24% Similarity=0.372 Sum_probs=44.0
Q ss_pred HHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEEEEeccC
Q 023903 191 EVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRN 262 (275)
Q Consensus 191 eL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~LrV~~Ar~ 262 (275)
+|.+.|.+||.+.=||++.. .-+|+|.+-+.|.+|+ .|+|.++.|+ .|+|..-.+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-----------~mwVTF~dg~sALaal-s~dg~~v~g~-----~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-----------TMWVTFRDGQSALAAL-SLDGIQVNGR-----TLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-----------CEEEEESSCHHHHHHH-HGCCSEETTE-----EEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC-----------eEEEEECccHHHHHHH-ccCCcEECCE-----EEEEEeCCc
Confidence 67788999999988888754 3689999999999998 5899999998 688876544
No 123
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.72 E-value=0.051 Score=43.24 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=49.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecC-------cccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE-------SKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 247 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~-------~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g 247 (275)
.+.|.|-+.|+. ....|.+.|++||.|.+..-..+. ... .+. .+-.|.|+++.+|.+||. -||..|.+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~-~~~--NWi~I~Y~~~~~A~rAL~-~NG~i~~g 80 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIP-SGG--NWIHITYDNPLSAQRALQ-KNGTIFSG 80 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E--CCT--TEEEEEESSHHHHHHHHT-TTTEEETT
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCC-CCC--CEEEEECCCHHHHHHHHH-hCCeEEcC
Confidence 466888889988 455666789999999887511000 000 011 378999999999999995 69999988
Q ss_pred CCCCCccEEEEec
Q 023903 248 DDPDSKFLRLQFS 260 (275)
Q Consensus 248 ~~~~~~~LrV~~A 260 (275)
.- .+-|.|.
T Consensus 81 ~~----mvGV~~~ 89 (100)
T PF05172_consen 81 SL----MVGVKPC 89 (100)
T ss_dssp CE----EEEEEE-
T ss_pred cE----EEEEEEc
Confidence 72 3456665
No 124
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.52 E-value=0.014 Score=53.64 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=55.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 241 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~Ln 241 (275)
..|||.||+.-++.+.|..-|+.||.|....++.+.. +++.+-.+|+|...-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r----~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR----GKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc----ccccccchhhhhcchhHHHHHHHhc
Confidence 7899999999999999999999999998876666654 6777889999999999999998874
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.43 E-value=0.0011 Score=69.00 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=56.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 245 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~ 245 (275)
..++||.||+..+.+.+|...|..++.+..+++.-.+.+ ++.+|.|+|+|..+++|.+|+...+...+
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~---~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNE---KRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhc---cccccceeeEeecCCchhhhhhhhhhhhh
Confidence 457899999999999999999999999887766522222 78899999999999999999976555444
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.97 E-value=0.029 Score=57.80 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=60.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEE-EEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 170 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 170 ~pp~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~-vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
.|-.....|||..||..+++.++.+.|+..-.|++ |.|....+ ++-++.|||+|..++++.+|...-+-+-+..+
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~----~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r 504 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPT----DLLRPAAFVAFIHPTAPLTASSVKTKFYPGHR 504 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCc----ccccchhhheeccccccchhhhcccccccCce
Confidence 44456789999999999999999999998877776 44443332 66778999999999998888754444333322
Q ss_pred CCCCccEEEEec
Q 023903 249 DPDSKFLRLQFS 260 (275)
Q Consensus 249 ~~~~~~LrV~~A 260 (275)
.|+|.-.
T Consensus 505 -----~irv~si 511 (944)
T KOG4307|consen 505 -----IIRVDSI 511 (944)
T ss_pred -----EEEeech
Confidence 5777543
No 127
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.78 E-value=0.082 Score=49.65 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=51.5
Q ss_pred HHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEEEEecc
Q 023903 189 KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 261 (275)
Q Consensus 189 eeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~LrV~~Ar 261 (275)
|+++++-+++||.|..|.|...... + -+-..--||+|+..++|.+|+-.|||.-|.|+ .++..|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~-p-~deavRiFveF~r~e~aiKA~VdlnGRyFGGr-----~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQ-P-EDEAVRIFVEFERVESAIKAVVDLNGRYFGGR-----VVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCC-c-cchhheeeeeeccHHHHHHHHHhcCCceecce-----eeeheecc
Confidence 4578889999999999887765421 1 11224579999999999999999999999998 67776643
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.76 E-value=0.0067 Score=63.62 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=60.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
.+.|||++||+..+++.+|+..|..+|.|.+|.|-.-+. +.---|+||.|.+...+-.|+..+.+..|.-.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~----~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g 441 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI----KTESAYAFVSLLNTDMTPSAKFEESGPLIGNG 441 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC----CcccchhhhhhhccccCcccchhhcCCccccC
Confidence 678999999999999999999999999999998865532 22225899999999999999999998887554
No 129
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.66 E-value=0.019 Score=52.58 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=47.8
Q ss_pred HHHHHHc-CCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEEEEecc
Q 023903 191 EVAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 261 (275)
Q Consensus 191 eL~~lFs-~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~LrV~~Ar 261 (275)
+|...|+ +||+|++++|-.+-. -..+|-.+|.|..+++|++|++.||+.-|.|+ +|...+.-
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~----~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~-----pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLG----DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGR-----PIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccc----hhhhhhhhhhcccHHHHHHHHHHHcCccccCC-----cceeeecC
Confidence 3444444 899999886654432 33567899999999999999999999999998 67777653
No 130
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.51 E-value=0.45 Score=38.46 Aligned_cols=71 Identities=13% Similarity=0.228 Sum_probs=54.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCC-CEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG-~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
+..+.+...|..++-++|..+.+.+- .|..++|+++.. .++-.+.+.|.+.+.|.+-.+.+||+.|.--.+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-----pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp 84 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-----PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP 84 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-----CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC
Confidence 34555666677777788887777774 466788887753 245689999999999999999999999976644
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.50 E-value=0.028 Score=54.99 Aligned_cols=73 Identities=23% Similarity=0.303 Sum_probs=54.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCC--CCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 176 STLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~f--G~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++||++||.+.++..+|..+|... +.-..+ |+ +. ||+||+..+...|.+|++.|+|..-...+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~-k~---------gyafvd~pdq~wa~kaie~~sgk~elqGk---- 66 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LV-KS---------GYAFVDCPDQQWANKAIETLSGKVELQGK---- 66 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-ee-ec---------ceeeccCCchhhhhhhHHhhchhhhhcCc----
Confidence 579999999999999999999864 221122 22 11 69999999999999999999986543332
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.+.|.++-..
T Consensus 67 r~e~~~sv~k 76 (584)
T KOG2193|consen 67 RQEVEHSVPK 76 (584)
T ss_pred eeeccchhhH
Confidence 5777766443
No 132
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.46 E-value=0.023 Score=59.50 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=60.4
Q ss_pred EEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEEEE
Q 023903 179 YVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQ 258 (275)
Q Consensus 179 fVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~LrV~ 258 (275)
++.|.+-..+-.-|..||++||.|..++..++.. .|.|+|.+.+.|..|+++|+|+++.... .+.+|.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N---------~alvs~~s~~sai~a~dAl~gkevs~~g---~Ps~V~ 369 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN---------MALVSFSSVESAILALDALQGKEVSVTG---APSRVS 369 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccccc---------chhhhhHHHHHHHHhhhhhcCCcccccC---CceeEE
Confidence 3444455667778999999999999999887763 7999999999999999999999986553 278999
Q ss_pred eccCC
Q 023903 259 FSRNP 263 (275)
Q Consensus 259 ~Ar~~ 263 (275)
||+.-
T Consensus 370 ~ak~~ 374 (1007)
T KOG4574|consen 370 FAKTL 374 (1007)
T ss_pred ecccc
Confidence 99853
No 133
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.27 E-value=0.074 Score=46.75 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=45.9
Q ss_pred CHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeeCCCCCCCccEEEEeccC
Q 023903 188 TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ--GYRMDEDDPDSKFLRLQFSRN 262 (275)
Q Consensus 188 teeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~Ln--G~~~~g~~~~~~~LrV~~Ar~ 262 (275)
..+.|+++|..|+.+.++..++.-. -..|.|.+.+.|.+|+..|+ +..+.+. .|+|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr---------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~-----~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR---------RIRVVFESPESAQRARQLLHWDGTSFNGK-----RLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT---------EEEEE-SSTTHHHHHHHTST--TSEETTE-----E-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC---------EEEEEeCCHHHHHHHHHHhcccccccCCC-----ceEEEEccc
Confidence 4578999999999999888776542 48999999999999999999 9999998 699999853
No 134
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.06 E-value=0.079 Score=53.17 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=45.6
Q ss_pred CCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEEEEeccCCC
Q 023903 199 FVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNPG 264 (275)
Q Consensus 199 fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~LrV~~Ar~~~ 264 (275)
.+...-+.++.|-.. ....|||||.|.+++++..+.+++||+.++.-. ..+...|.||+-.+
T Consensus 413 ~gtYDFlYLPiDF~n---kcNvGYAFINm~sp~ai~~F~kAFnGk~W~~Fn-S~Kia~itYArIQG 474 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKN---KCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFN-SEKIASITYARIQG 474 (549)
T ss_pred cCccceEEecccccc---ccccceeEEeecCHHHHHHHHHHHcCCchhhhc-ceeeeeeehhhhhc
Confidence 344444555555432 446799999999999999999999999876543 33468899998654
No 135
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.63 E-value=0.033 Score=52.79 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=60.7
Q ss_pred CCEEEEcCCCCCCCHH-HHH--HHHcCCCCEEEEEEeecCc-ccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 175 SSTLYVEGLPADSTKR-EVA--HIFRPFVGYKEVRLVIKES-KLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 175 ~~tLfVgNLP~~vtee-eL~--~lFs~fG~i~~vrl~~~~~-~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
.+-+||-+|+.....+ .|+ +.|.+||.|.+|.+..+.. ....+.+.. ++|+|+..++|..||...+|..++++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s-~yITy~~~eda~rci~~v~g~~~dg~-- 153 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCS-VYITYEEEEDADRCIDDVDGFVDDGR-- 153 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCc-ccccccchHhhhhHHHHhhhHHhhhh--
Confidence 4668899999886544 444 5799999999998876552 111122222 79999999999999999999999998
Q ss_pred CCccEEEEeccC
Q 023903 251 DSKFLRLQFSRN 262 (275)
Q Consensus 251 ~~~~LrV~~Ar~ 262 (275)
.|+.+|...
T Consensus 154 ---~lka~~gtt 162 (327)
T KOG2068|consen 154 ---ALKASLGTT 162 (327)
T ss_pred ---hhHHhhCCC
Confidence 577776643
No 136
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.05 E-value=0.27 Score=49.66 Aligned_cols=65 Identities=14% Similarity=0.239 Sum_probs=54.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcC--CCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHH-------hCCCe
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRP--FVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA-------LQGYR 244 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~--fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~-------LnG~~ 244 (275)
..|.|.+.-||..+-+|+++.||+. +-.++.|.+-.+.. =||+|++..+|..|.+. ++|+.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n----------WyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN----------WYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc----------eEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 5677888999999999999999985 78888888876652 49999999999999754 56777
Q ss_pred eCCC
Q 023903 245 MDED 248 (275)
Q Consensus 245 ~~g~ 248 (275)
|.-+
T Consensus 244 ImAR 247 (684)
T KOG2591|consen 244 IMAR 247 (684)
T ss_pred hhhh
Confidence 7665
No 137
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.25 E-value=0.57 Score=39.90 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=52.4
Q ss_pred CCEEEEcCCCCCCC-HHH---HHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 175 SSTLYVEGLPADST-KRE---VAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 175 ~~tLfVgNLP~~vt-eee---L~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
-.||.|.-|..++. .++ +...++.||.|.+|.+.-.. -|.|.|.+..+|-+|+.+++... .|.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq----------savVvF~d~~SAC~Av~Af~s~~-pgt-- 152 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ----------SAVVVFKDITSACKAVSAFQSRA-PGT-- 152 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc----------eEEEEehhhHHHHHHHHhhcCCC-CCc--
Confidence 57899988877653 233 44567789999999876332 59999999999999999998744 343
Q ss_pred CCccEEEEec
Q 023903 251 DSKFLRLQFS 260 (275)
Q Consensus 251 ~~~~LrV~~A 260 (275)
.++.+|.
T Consensus 153 ---m~qCsWq 159 (166)
T PF15023_consen 153 ---MFQCSWQ 159 (166)
T ss_pred ---eEEeecc
Confidence 3777764
No 138
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.34 E-value=1.7 Score=32.17 Aligned_cols=67 Identities=19% Similarity=0.356 Sum_probs=38.7
Q ss_pred EEEEc-CCCCCCCHHHHHHHHcCCCCEE-----EEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 177 TLYVE-GLPADSTKREVAHIFRPFVGYK-----EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 177 tLfVg-NLP~~vteeeL~~lFs~fG~i~-----~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
+|||. +=-..++..+|..++....+|. .|++..+ |+||+-.. +.|+.++++|++..+.++
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-----------~S~vev~~-~~a~~v~~~l~~~~~~gk-- 67 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-----------FSFVEVPE-EVAEKVLEALNGKKIKGK-- 67 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS------------EEEEE-T-T-HHHHHHHHTT--SSS---
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-----------EEEEEECH-HHHHHHHHHhcCCCCCCe--
Confidence 45552 2234578889998888876664 5555432 89998876 588999999999999998
Q ss_pred CCccEEEEec
Q 023903 251 DSKFLRLQFS 260 (275)
Q Consensus 251 ~~~~LrV~~A 260 (275)
.|+|+.|
T Consensus 68 ---~v~ve~A 74 (74)
T PF03880_consen 68 ---KVRVERA 74 (74)
T ss_dssp ------EEE-
T ss_pred ---eEEEEEC
Confidence 5888754
No 139
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.36 E-value=2.7 Score=41.74 Aligned_cols=72 Identities=19% Similarity=0.349 Sum_probs=60.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCC-CCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~f-G~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
+.+|+|--+|..+|-.||..+...| -.|..++++++... .+-...|.|.+.++|..-.+.+||..|..-.++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-----nrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e 146 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-----NRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE 146 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-----ceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc
Confidence 7899999999999999999988866 55788999986532 345789999999999999999999999776543
No 140
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.25 E-value=2.8 Score=42.74 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=58.9
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHcCC----CCEEEEEEeecCccc-------CCCC----------------------
Q 023903 173 DASSTLYVEGLPAD-STKREVAHIFRPF----VGYKEVRLVIKESKL-------RGGD---------------------- 218 (275)
Q Consensus 173 ~~~~tLfVgNLP~~-vteeeL~~lFs~f----G~i~~vrl~~~~~~~-------~~G~---------------------- 218 (275)
..+++|-|.||.|+ +.-++|..+|+.| |.|.+|.|....-.. ..|-
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 35789999999998 8889999999988 578888876532100 0011
Q ss_pred ---------------cceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 219 ---------------PLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 219 ---------------skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
-.-||.|+|++.+.|.......+|..|...
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 235899999999999999999999999655
No 141
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=85.08 E-value=0.52 Score=44.14 Aligned_cols=72 Identities=18% Similarity=0.040 Sum_probs=59.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
...++||+++.+.+.+.++..+|...|......+...... ..+++++.|.|...+.+..|+.....+....+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~---~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~ 158 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDS---LSSKGGLSVHFAGKSQFFAALEESGSKVLDGN 158 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccc---cccccceeeccccHHHHHHHHHhhhccccccc
Confidence 4688999999999999999999999998887777654433 67889999999999999999976554555555
No 142
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=84.48 E-value=0.78 Score=45.63 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=57.4
Q ss_pred CCEEEEcCCCCCC-CHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 175 SSTLYVEGLPADS-TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 175 ~~tLfVgNLP~~v-teeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.+.|-+.-.|+.. |.++|...|.+||.|..|.+-.... -|.|+|.+..+|-+|. +.++..|+++
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~---------~a~vTF~t~aeag~a~-~s~~avlnnr----- 436 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL---------HAVVTFKTRAEAGEAY-ASHGAVLNNR----- 436 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh---------hheeeeeccccccchh-ccccceecCc-----
Confidence 4556666666653 6778999999999999987754421 4899999999997775 5799999998
Q ss_pred cEEEEeccC
Q 023903 254 FLRLQFSRN 262 (275)
Q Consensus 254 ~LrV~~Ar~ 262 (275)
.|||-|-+.
T Consensus 437 ~iKl~whnp 445 (526)
T KOG2135|consen 437 FIKLFWHNP 445 (526)
T ss_pred eeEEEEecC
Confidence 699999765
No 143
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=83.26 E-value=2.1 Score=44.13 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=55.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 249 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~ 249 (275)
+..++||+|+-..|.++-++.+...+|-|..++.+. |+|.+|.....+..|+..|+-..+++.+
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------------fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------------FGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------------hcccchhhHHHHHHHHHHhcccCCCcch
Confidence 358999999999999999999999999877654331 8999999999999999999888887763
No 144
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.75 E-value=3 Score=39.49 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=45.1
Q ss_pred EEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 178 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 178 LfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
|=|-+.|+.. -..|-.+|++||.|++.....+ | -+-.|.|.+..+|.+||. .||+.|++.
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n------g---NwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN------G---NWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeeecCCC------C---ceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 4445666643 3456678999999987655422 3 288999999999999996 599999887
No 145
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=76.28 E-value=14 Score=27.10 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 186 DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 186 ~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
.++-++|+..++.|. ...| ..+++ | =||.|.+..+|++|....+|..+...
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I--~~d~t--------G-fYIvF~~~~Ea~rC~~~~~~~~~f~y 61 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRI--RDDRT--------G-FYIVFNDSKEAERCFRAEDGTLFFTY 61 (66)
T ss_pred CccHHHHHHHHhcCC-cceE--EecCC--------E-EEEEECChHHHHHHHHhcCCCEEEEE
Confidence 467889999999995 3333 34443 3 48999999999999999999988765
No 146
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=65.73 E-value=4.2 Score=35.84 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=52.8
Q ss_pred CEEEEcCCCCCCC-----HHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 176 STLYVEGLPADST-----KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 176 ~tLfVgNLP~~vt-----eeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
.++++.+++.++- ......||.+|-+.....+++.. ++--|.|.+++.|+.|...++.+.|.++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf---------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~- 80 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF---------RRVRINFSNPEAAADARIKLHSTSFNGKN- 80 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh---------ceeEEeccChhHHHHHHHHhhhcccCCCc-
Confidence 5688888887642 22355677777666555555433 35678999999999999999999999884
Q ss_pred CCccEEEEecc
Q 023903 251 DSKFLRLQFSR 261 (275)
Q Consensus 251 ~~~~LrV~~Ar 261 (275)
.++.-|+.
T Consensus 81 ---~~k~yfaQ 88 (193)
T KOG4019|consen 81 ---ELKLYFAQ 88 (193)
T ss_pred ---eEEEEEcc
Confidence 47766664
No 147
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=61.86 E-value=1.4 Score=44.65 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=58.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
..++|||.|++++++-.+|..+++.+-.+..+-+-..... .+.+-+..|.|.-.-.-..|+.+||+..+...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~ae---k~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAE---KNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHH---HHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 4567999999999999999999999988887765543321 22345789999998889999999999888765
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=61.31 E-value=1.7 Score=42.43 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=53.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
..||+|++|+..+...++-++|..+|+|...++..+.. .-+|-|+|-.......|+. ++|..+.-+
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~-------s~~c~~sf~~qts~~halr-~~gre~k~q 216 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR-------SSSCSHSFRKQTSSKHALR-SHGRERKRQ 216 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC-------CcchhhhHhhhhhHHHHHH-hcchhhhhh
Confidence 57899999999999999999999999998887765432 2478899998888888874 577766543
No 149
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=60.28 E-value=11 Score=30.67 Aligned_cols=53 Identities=13% Similarity=0.200 Sum_probs=28.3
Q ss_pred EEEEcCCCCC---------CCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHH
Q 023903 177 TLYVEGLPAD---------STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAAT 235 (275)
Q Consensus 177 tLfVgNLP~~---------vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~ 235 (275)
++.|-|++.. ++.++|.+.|+.|..++ ++.+..+. .+.|++.|+|...-..-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~-----gh~g~aiv~F~~~w~Gf~ 71 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ-----GHTGFAIVEFNKDWSGFK 71 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT-----EEEEEEEEE--SSHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC-----CCcEEEEEEECCChHHHH
Confidence 4566677543 35578999999998875 55555552 345899999998554433
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=57.47 E-value=0.57 Score=46.11 Aligned_cols=77 Identities=12% Similarity=0.243 Sum_probs=62.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.++.+-|.|+|+...++.|..|..+||.+..|..+...... -.--|+|.+.+.+..|+..|+|..+...
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et------avvnvty~~~~~~~~ai~kl~g~Q~en~----- 147 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET------AVVNVTYSAQQQHRQAIHKLNGPQLENQ----- 147 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH------HHHHHHHHHHHHHHHHHHhhcchHhhhh-----
Confidence 46779999999999999999999999999988765443210 1334789999999999999999999887
Q ss_pred cEEEEecc
Q 023903 254 FLRLQFSR 261 (275)
Q Consensus 254 ~LrV~~Ar 261 (275)
.++|.|--
T Consensus 148 ~~k~~YiP 155 (584)
T KOG2193|consen 148 HLKVGYIP 155 (584)
T ss_pred hhhcccCc
Confidence 58888853
No 151
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=55.77 E-value=15 Score=31.15 Aligned_cols=62 Identities=26% Similarity=0.274 Sum_probs=42.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHH
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALS 238 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~ 238 (275)
....+++.+++..+++.++..+|..++.+..+.+...... .....+.++.+.....+..+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 224 KSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDG---KIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccceeeccccccccchhHHHHhccccccceeeeccCCCCC---cccccccccchhHHHhhhhhhc
Confidence 4688999999999999999999999999977776655432 2233344444444444444443
No 152
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=52.21 E-value=4.7 Score=36.72 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=58.1
Q ss_pred CEEEEcC----CCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 176 STLYVEG----LPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 176 ~tLfVgN----LP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
.+++.|+ |...++++.+.+.|++-+.+..+++..+.. |+++-+.||++.-....-.++...++....-+
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d----~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND----GRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc----CCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 5677788 788899999999999999999999887764 77888999999988888888888777766544
No 153
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=50.86 E-value=16 Score=34.57 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=35.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHH
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPA 231 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~ 231 (275)
.-|||+||+.++.-.+|+..+.+-+.+- .+|..+ | ++|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk------g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK------G-HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeEeee------c-CCcceeEecCCcc
Confidence 4599999999999999999888876532 233322 1 2367999999854
No 154
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=44.61 E-value=36 Score=33.82 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=54.4
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHcCC----CCEEEEEEeecCccc--------------------------------
Q 023903 172 PDASSTLYVEGLPAD-STKREVAHIFRPF----VGYKEVRLVIKESKL-------------------------------- 214 (275)
Q Consensus 172 p~~~~tLfVgNLP~~-vteeeL~~lFs~f----G~i~~vrl~~~~~~~-------------------------------- 214 (275)
-++++.|-|-||.|+ +.-.+|..+|+.| |.+..|.|.+..-.+
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 446789999999998 8888999999987 556666654321100
Q ss_pred -----CCC-------C------------------cceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 215 -----RGG-------D------------------PLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 215 -----~~G-------~------------------skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
..| . -.-||.|++++.+.+.....+.+|..+...
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s 286 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS 286 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc
Confidence 001 0 023789999999999998899999887543
No 155
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.59 E-value=43 Score=33.14 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=42.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCE-EEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHH
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGY-KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 239 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i-~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~ 239 (275)
..|=|-++|.....++|..+|+.|++- ..|+++.+. .+|-.|.+...|..|+..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt----------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT----------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc----------eeEEeecchHHHHHHhhc
Confidence 467789999998888899999999652 356666443 699999999999999853
No 156
>PF14893 PNMA: PNMA
Probab=39.17 E-value=24 Score=33.86 Aligned_cols=51 Identities=22% Similarity=0.489 Sum_probs=32.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHc----CCCCEEEE-EEeecCcccCCCCcceEEEEEeCCH
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFR----PFVGYKEV-RLVIKESKLRGGDPLILCFVDFENP 230 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs----~fG~i~~v-rl~~~~~~~~~G~skGfaFVeF~~~ 230 (275)
+.+.|.|.+||.+|++++|.+.+. +.|.+.-+ ++..... + .--++|+|...
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~----~--~~aalve~~e~ 72 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE----N--AKAALVEFAED 72 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc----c--cceeeeecccc
Confidence 457899999999999999887654 45554322 1111111 1 12588888753
No 157
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=37.63 E-value=24 Score=33.40 Aligned_cols=88 Identities=22% Similarity=0.384 Sum_probs=52.8
Q ss_pred CCEEEEcCCCCC------------CCHHHHHHHHcCCCCEEEEEEeecCccc--CCCC-----cceEEE---------EE
Q 023903 175 SSTLYVEGLPAD------------STKREVAHIFRPFVGYKEVRLVIKESKL--RGGD-----PLILCF---------VD 226 (275)
Q Consensus 175 ~~tLfVgNLP~~------------vteeeL~~lFs~fG~i~~vrl~~~~~~~--~~G~-----skGfaF---------Ve 226 (275)
..|||+.+||-. -+|+-|+..|+.||.|..|.|+.-..-+ ..|+ .+||+| |+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 367888888731 4678899999999999988776432110 0133 234433 44
Q ss_pred eCCHHHHHHHHHHhCCCeeCCCCCC---CccEEEEeccC
Q 023903 227 FENPACAATALSALQGYRMDEDDPD---SKFLRLQFSRN 262 (275)
Q Consensus 227 F~~~~~A~~Al~~LnG~~~~g~~~~---~~~LrV~~Ar~ 262 (275)
|-....-..|+.+|.|.++.-+..+ -..++|.|.+.
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 5445556678888888765322100 11367777654
No 158
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=36.36 E-value=1.7e+02 Score=29.99 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=38.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.=.|.-|||-++ |.|.++--+..+. -..+|-|.| |+++++|.+|+.. +..-.+. .
T Consensus 355 gl~iL~GNLaP~-------------GaViK~sa~~~~~----~~~~G~A~V-F~see~a~~ai~~--g~i~~gd-----V 409 (535)
T TIGR00110 355 GLAILKGNLAPN-------------GAVVKIAGVDEDM----TKFEGPAKV-FESEEEALEAILG--GKIKEGD-----V 409 (535)
T ss_pred CEEEEecCCCcC-------------CeEEEecccCCcc----cEEEEeEEE-ECCHHHHHHHHhc--CCCCCCe-----E
Confidence 345666787653 5565554443321 234466765 9999999999854 3333332 4
Q ss_pred EEEEeccCCCCCCCCC
Q 023903 255 LRLQFSRNPGPRSVFG 270 (275)
Q Consensus 255 LrV~~Ar~~~~r~ggg 270 (275)
|.|.| .++++++|
T Consensus 410 vViRy---eGPkGgPG 422 (535)
T TIGR00110 410 VVIRY---EGPKGGPG 422 (535)
T ss_pred EEEeC---CCCCCCCC
Confidence 56655 45555543
No 159
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=33.16 E-value=61 Score=30.73 Aligned_cols=84 Identities=15% Similarity=0.176 Sum_probs=56.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccC----CCCcceEEEEEeCCHHHHHHH----HHHhCCCeeC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLR----GGDPLILCFVDFENPACAATA----LSALQGYRMD 246 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~----~G~skGfaFVeF~~~~~A~~A----l~~LnG~~~~ 246 (275)
++.|.+.|+..+++-..+...|-+||.|+.|.++.+..+.. .-+..-.+.+.|-+.+.+-.- ++.|.-++-.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 45688899999999999999999999999999997761100 012234688999988776542 3333332221
Q ss_pred CCCCCCccEEEEecc
Q 023903 247 EDDPDSKFLRLQFSR 261 (275)
Q Consensus 247 g~~~~~~~LrV~~Ar 261 (275)
= .+..|+|+|..
T Consensus 95 L---~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 L---KSESLTLSFVS 106 (309)
T ss_pred c---CCcceeEEEEE
Confidence 1 12358887765
No 160
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=31.53 E-value=94 Score=22.70 Aligned_cols=20 Identities=10% Similarity=0.105 Sum_probs=15.8
Q ss_pred HHHHHHHcCCCCEEEEEEee
Q 023903 190 REVAHIFRPFVGYKEVRLVI 209 (275)
Q Consensus 190 eeL~~lFs~fG~i~~vrl~~ 209 (275)
++|+++|++.|.|.-+-+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999997665543
No 161
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=29.65 E-value=31 Score=31.75 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=27.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEE
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV 205 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~v 205 (275)
..+||+-|+|..+|++.|.++.++.|.+..+
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 5789999999999999999999998865543
No 162
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=29.09 E-value=1.1e+02 Score=33.58 Aligned_cols=12 Identities=25% Similarity=0.482 Sum_probs=5.3
Q ss_pred CCCCCCCCCCcC
Q 023903 103 GEASAFSGDRLR 114 (275)
Q Consensus 103 g~~~~~gG~G~g 114 (275)
|.+++.+|+|+|
T Consensus 1193 GYGggys~gGyg 1204 (1282)
T KOG0921|consen 1193 GYGGGYSGGGYG 1204 (1282)
T ss_pred CcCCCCCCCCcC
Confidence 444444444443
No 163
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=27.52 E-value=38 Score=22.08 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=10.7
Q ss_pred CCCCHHHHHHHHcCCC
Q 023903 185 ADSTKREVAHIFRPFV 200 (275)
Q Consensus 185 ~~vteeeL~~lFs~fG 200 (275)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4689999999999864
No 164
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=26.88 E-value=2.1e+02 Score=19.42 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=39.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCH----HHHHHHHHH
Q 023903 177 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP----ACAATALSA 239 (275)
Q Consensus 177 tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~----~~A~~Al~~ 239 (275)
||.|.||.=.-....|+..+...-+|..+.+-... +-.-|.|... +...++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~---------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET---------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT---------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC---------CEEEEEEecCCCCHHHHHHHHHH
Confidence 57788887777788899999999999998876543 2578888754 444445543
No 165
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=25.01 E-value=3.9e+02 Score=27.75 Aligned_cols=69 Identities=20% Similarity=0.131 Sum_probs=38.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCe-eCCCCCCCc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR-MDEDDPDSK 253 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~-~~g~~~~~~ 253 (275)
.=.|.-|||-++ |.|.++--+..+. -+.+|-|.| |+++++|.+|+. ++.. |....
T Consensus 373 gl~vL~GNLaP~-------------GaViK~sav~~~~----~~~~G~A~V-F~see~a~~ai~--~g~i~i~~gd---- 428 (571)
T PRK06131 373 GIAVLRGNLAPD-------------GAVIKPSAASPEL----LKHEGRAVV-FEGYEDYKARID--DPDLDVDEDT---- 428 (571)
T ss_pred CeEEeecCCCCC-------------CceeeecccCccc----cEEEeeeEE-ECCHHHHHHHHh--CCCcCCCCCe----
Confidence 445666887653 5565554443321 123455655 999999999873 4543 32332
Q ss_pred cEEEEeccCCCCCCCCC
Q 023903 254 FLRLQFSRNPGPRSVFG 270 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ggg 270 (275)
.|.|.| .++++++|
T Consensus 429 VvVIRy---eGPkGgPG 442 (571)
T PRK06131 429 VLVLRN---AGPKGYPG 442 (571)
T ss_pred EEEEeC---CCCCCCCC
Confidence 455544 46665544
No 166
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=24.92 E-value=3e+02 Score=28.78 Aligned_cols=40 Identities=25% Similarity=0.363 Sum_probs=24.7
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEEEEeccCCCCCCCCC
Q 023903 220 LILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNPGPRSVFG 270 (275)
Q Consensus 220 kGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~LrV~~Ar~~~~r~ggg 270 (275)
+|=|.| |+++++|.+|+.. +. |...+ .|.|.| .++++++|
T Consensus 448 ~GpA~V-Fdsee~a~~ai~~--g~-I~~gd----VvVIRy---eGPkGgPG 487 (615)
T PRK12448 448 TGPARV-FESQDDAVEAILG--GK-VKAGD----VVVIRY---EGPKGGPG 487 (615)
T ss_pred EEeEEE-ECCHHHHHHHHhc--CC-CCCCe----EEEEeC---CCCCCCcC
Confidence 355554 9999999999854 43 43332 566655 45555544
No 167
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=24.87 E-value=86 Score=30.67 Aligned_cols=73 Identities=18% Similarity=0.318 Sum_probs=50.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEE-EEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~v-rl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
-..+.|.+||...++++|.+-..+|-.-..- .+.+...... ..-.+.++|.|...++...-...++|+.|...
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~-~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLR-NHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccch-hhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 3678899999999999988877776443222 2221111111 12246899999999998888888999998765
No 168
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=24.17 E-value=41 Score=26.12 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHH
Q 023903 175 SSTLYVEGLPADSTKREVAHI 195 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~l 195 (275)
.++|.|.|||...+|++|++.
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred CCEEEEeCCCCCCChhhheee
Confidence 578999999999999999864
No 169
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=23.50 E-value=2.4e+02 Score=29.34 Aligned_cols=70 Identities=10% Similarity=0.145 Sum_probs=50.4
Q ss_pred CEEEEc-CCCCCCCHHHHHHHHcCCCCEE-----EEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCC
Q 023903 176 STLYVE-GLPADSTKREVAHIFRPFVGYK-----EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 249 (275)
Q Consensus 176 ~tLfVg-NLP~~vteeeL~~lFs~fG~i~-----~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~ 249 (275)
.++||. +=-..++..+|..++..-++|. .|+|..+ |.||+-.. ..|...++.|++..+.++
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~-----------~s~v~~~~-~~~~~~~~~~~~~~~~~~- 553 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS-----------HSTIELPK-GMPGEVLQHFTRTRILNK- 553 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC-----------ceEEEcCh-hhHHHHHHHhccccccCC-
Confidence 456663 2334588888888888766664 3455422 78999875 568888999999999998
Q ss_pred CCCccEEEEeccC
Q 023903 250 PDSKFLRLQFSRN 262 (275)
Q Consensus 250 ~~~~~LrV~~Ar~ 262 (275)
.|.|+.++.
T Consensus 554 ----~~~~~~~~~ 562 (629)
T PRK11634 554 ----PMNMQLLGD 562 (629)
T ss_pred ----ceEEEECCC
Confidence 588888753
No 170
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=21.95 E-value=2.4e+02 Score=20.11 Aligned_cols=43 Identities=14% Similarity=-0.003 Sum_probs=29.1
Q ss_pred HHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 023903 191 EVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 241 (275)
Q Consensus 191 eL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~Ln 241 (275)
+|.+++.++| +.-.++.-.- + -++.|+-+.+.+.++++++.|.
T Consensus 38 ~~~~~~~~~G-a~~~~~sGsG-----~--G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 38 ELKEAAEENG-ALGAKMSGSG-----G--GPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHTT-ESEEEEETTS-----S--SSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CCceecCCCC-----C--CCeEEEEECCHHHHHHHHHHHH
Confidence 5667777888 4444444221 1 2588888889999999888764
No 171
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.96 E-value=1.9e+02 Score=29.05 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=47.0
Q ss_pred CCCCCCCEEEEcCCCCCCCH---HHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 023903 170 LPPDASSTLYVEGLPADSTK---REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 246 (275)
Q Consensus 170 ~pp~~~~tLfVgNLP~~vte---eeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~ 246 (275)
+||.|..-=+||||++-... ..+..+=++||.|..+++-.. -.|.-.+.+.|++|+. -|+..+.
T Consensus 27 lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~------------~~Vviss~~~akE~l~-~~d~~fa 93 (489)
T KOG0156|consen 27 LPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV------------PVVVISSYEAAKEVLV-KQDLEFA 93 (489)
T ss_pred CCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc------------eEEEECCHHHHHHHHH-hCCcccc
Confidence 33333444468888865443 456667779999998888543 2588899999999985 4788888
Q ss_pred CC
Q 023903 247 ED 248 (275)
Q Consensus 247 g~ 248 (275)
++
T Consensus 94 ~R 95 (489)
T KOG0156|consen 94 DR 95 (489)
T ss_pred CC
Confidence 87
No 172
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.95 E-value=19 Score=36.00 Aligned_cols=78 Identities=10% Similarity=-0.114 Sum_probs=56.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccE
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 255 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~L 255 (275)
...|+..||...+++++.-+|..|+-|..+.+.+... ++-.+..+||.-.. ++|..|++.+.-..+.+. .+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~---~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~-----~~ 74 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVN---GSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFES-----QD 74 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCcccc---CCcceeeeeeeeec-cCcccccCHHHHhhhhhh-----hh
Confidence 4567788999999999999999999888877665543 36667788887665 566667766655555555 36
Q ss_pred EEEeccC
Q 023903 256 RLQFSRN 262 (275)
Q Consensus 256 rV~~Ar~ 262 (275)
++..+..
T Consensus 75 r~~~~~~ 81 (572)
T KOG4365|consen 75 RKAVSPS 81 (572)
T ss_pred hhhcCch
Confidence 6666543
Done!