Query 023903
Match_columns 275
No_of_seqs 291 out of 1668
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 14:44:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnz_A Probable RNA-binding pr 99.9 4.5E-21 1.5E-25 145.9 13.7 91 174-272 4-94 (95)
2 4fxv_A ELAV-like protein 1; RN 99.8 4.4E-21 1.5E-25 149.2 11.0 80 175-262 19-98 (99)
3 1x5u_A Splicing factor 3B subu 99.8 1.9E-20 6.6E-25 145.1 13.4 92 173-272 13-104 (105)
4 2dgs_A DAZ-associated protein 99.8 4.9E-20 1.7E-24 141.6 13.8 89 174-271 9-97 (99)
5 1x5s_A Cold-inducible RNA-bind 99.8 2E-20 6.7E-25 144.3 11.4 87 174-268 11-97 (102)
6 2dng_A Eukaryotic translation 99.8 3.8E-20 1.3E-24 143.4 12.9 94 169-272 9-102 (103)
7 2d9p_A Polyadenylate-binding p 99.8 6.2E-20 2.1E-24 141.9 14.0 89 171-269 11-99 (103)
8 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.9E-20 6.4E-25 144.4 10.9 90 174-271 11-100 (102)
9 2cpz_A CUG triplet repeat RNA- 99.8 4.4E-20 1.5E-24 145.7 13.2 86 174-267 24-109 (115)
10 2cpe_A RNA-binding protein EWS 99.8 3.5E-20 1.2E-24 145.6 12.3 90 173-270 13-110 (113)
11 2cq0_A Eukaryotic translation 99.8 5.8E-20 2E-24 142.1 12.6 85 174-266 14-98 (103)
12 2dnm_A SRP46 splicing factor; 99.8 4.5E-20 1.5E-24 142.7 11.8 86 174-267 12-97 (103)
13 2cph_A RNA binding motif prote 99.8 9E-20 3.1E-24 141.5 13.5 86 174-267 14-101 (107)
14 3s8s_A Histone-lysine N-methyl 99.8 4.5E-20 1.5E-24 146.3 11.9 82 174-263 5-86 (110)
15 2dgp_A Bruno-like 4, RNA bindi 99.8 3.6E-20 1.2E-24 143.8 10.9 89 173-269 11-102 (106)
16 1x4a_A Splicing factor, argini 99.8 1.2E-19 4.1E-24 141.9 13.8 83 174-267 21-103 (109)
17 1x5t_A Splicing factor 3B subu 99.8 2.5E-20 8.6E-25 142.0 9.6 87 174-268 4-91 (96)
18 1whw_A Hypothetical protein ri 99.8 8.8E-20 3E-24 139.9 12.5 86 174-267 7-92 (99)
19 1x4h_A RNA-binding protein 28; 99.8 1.1E-19 3.9E-24 141.8 13.3 88 173-268 13-106 (111)
20 2la6_A RNA-binding protein FUS 99.8 8.2E-20 2.8E-24 140.5 12.2 85 169-261 7-99 (99)
21 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.2E-19 4.2E-24 140.2 13.1 85 174-268 14-98 (103)
22 1wi8_A EIF-4B, eukaryotic tran 99.8 8.4E-20 2.9E-24 141.6 12.1 92 170-270 10-101 (104)
23 2div_A TRNA selenocysteine ass 99.8 4.8E-20 1.6E-24 141.4 10.4 88 174-265 8-96 (99)
24 1u6f_A Tcubp1, RNA-binding pro 99.8 1.4E-19 4.8E-24 147.1 13.7 87 172-266 39-125 (139)
25 3ex7_B RNA-binding protein 8A; 99.8 4.8E-20 1.6E-24 147.5 10.5 83 174-264 21-103 (126)
26 2cpf_A RNA binding motif prote 99.8 7.2E-20 2.5E-24 140.1 10.9 88 174-266 4-91 (98)
27 3bs9_A Nucleolysin TIA-1 isofo 99.8 6.4E-20 2.2E-24 137.1 10.4 82 174-263 5-86 (87)
28 2cqc_A Arginine/serine-rich sp 99.8 1.1E-19 3.7E-24 138.0 11.7 83 172-262 12-94 (95)
29 2dnh_A Bruno-like 5, RNA bindi 99.8 3.2E-19 1.1E-23 138.2 14.6 84 174-266 14-100 (105)
30 2cq3_A RNA-binding protein 9; 99.8 3E-19 1E-23 138.1 14.3 84 174-267 14-97 (103)
31 2do4_A Squamous cell carcinoma 99.8 2.5E-19 8.5E-24 137.8 13.2 83 174-265 16-98 (100)
32 2fc8_A NCL protein; structure 99.8 1.7E-19 5.9E-24 139.0 12.1 90 173-273 13-102 (102)
33 2dgv_A HnRNP M, heterogeneous 99.8 1.6E-19 5.3E-24 136.5 11.4 83 174-266 7-89 (92)
34 2e5h_A Zinc finger CCHC-type a 99.8 1.5E-19 5.2E-24 137.1 11.4 80 174-261 15-94 (94)
35 4f25_A Polyadenylate-binding p 99.8 9.6E-20 3.3E-24 144.6 10.7 81 175-265 5-85 (115)
36 3mdf_A Peptidyl-prolyl CIS-tra 99.8 9E-20 3.1E-24 135.7 9.9 80 174-261 6-85 (85)
37 2fy1_A RNA-binding motif prote 99.8 1.5E-19 5.1E-24 144.0 11.7 83 173-264 5-87 (116)
38 2dgo_A Cytotoxic granule-assoc 99.8 3.5E-19 1.2E-23 140.3 13.6 84 174-265 14-97 (115)
39 2khc_A Testis-specific RNP-typ 99.8 2.6E-19 8.8E-24 141.7 12.4 81 173-261 38-118 (118)
40 1p27_B RNA-binding protein 8A; 99.8 1.8E-19 6.2E-24 139.8 11.0 84 174-265 22-105 (106)
41 2do0_A HnRNP M, heterogeneous 99.8 6.8E-19 2.3E-23 138.2 14.3 81 174-263 14-94 (114)
42 2lkz_A RNA-binding protein 5; 99.8 3.2E-20 1.1E-24 144.0 6.6 80 175-262 9-94 (95)
43 2x1f_A MRNA 3'-END-processing 99.8 1.8E-19 6.1E-24 137.8 10.5 83 174-264 1-83 (96)
44 3md1_A Nuclear and cytoplasmic 99.8 2.9E-19 9.9E-24 132.4 11.4 81 175-263 1-81 (83)
45 2cpi_A CCR4-NOT transcription 99.8 2.2E-19 7.4E-24 141.6 11.3 86 174-264 14-102 (111)
46 2lxi_A RNA-binding protein 10; 99.8 1.8E-20 6.2E-25 143.3 4.8 82 175-264 1-84 (91)
47 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.5E-19 1.2E-23 147.8 12.3 84 173-264 37-120 (156)
48 2kxn_B Transformer-2 protein h 99.8 2.7E-19 9.3E-24 145.5 11.4 85 173-265 44-128 (129)
49 4a8x_A RNA-binding protein wit 99.8 2.2E-19 7.4E-24 134.3 9.8 85 175-266 4-88 (88)
50 2dh8_A DAZ-associated protein 99.8 2.9E-19 1E-23 138.6 10.4 86 174-268 15-100 (105)
51 2dhg_A TRNA selenocysteine ass 99.8 4.6E-19 1.6E-23 137.0 11.1 82 174-264 8-91 (104)
52 2ywk_A Putative RNA-binding pr 99.8 3.3E-19 1.1E-23 135.5 9.9 80 174-262 15-94 (95)
53 3p5t_L Cleavage and polyadenyl 99.8 8.5E-20 2.9E-24 138.4 6.6 82 176-265 2-85 (90)
54 1oo0_B CG8781-PA, drosophila Y 99.8 2.9E-19 9.9E-24 139.7 9.9 84 174-265 25-108 (110)
55 2dnq_A RNA-binding protein 4B; 99.8 1E-18 3.5E-23 132.1 12.3 82 174-271 7-88 (90)
56 2fc9_A NCL protein; structure 99.8 9.7E-19 3.3E-23 134.7 12.2 82 174-267 14-95 (101)
57 2jrs_A RNA-binding protein 39; 99.8 8.6E-19 2.9E-23 138.0 12.0 82 174-263 25-106 (108)
58 3ulh_A THO complex subunit 4; 99.8 8.5E-19 2.9E-23 136.2 11.3 79 174-261 28-106 (107)
59 2cpx_A Hypothetical protein FL 99.8 2.4E-19 8.1E-24 141.1 8.2 85 172-268 22-110 (115)
60 3ns6_A Eukaryotic translation 99.8 1.9E-19 6.5E-24 139.5 7.4 81 174-262 5-92 (100)
61 1x4e_A RNA binding motif, sing 99.8 1.3E-19 4.3E-24 135.3 6.1 80 174-261 4-83 (85)
62 1wez_A HnRNP H', FTP-3, hetero 99.8 6.7E-19 2.3E-23 137.5 10.5 82 174-266 14-95 (102)
63 2cqp_A RNA-binding protein 12; 99.8 3.5E-19 1.2E-23 136.3 8.4 83 174-264 14-96 (98)
64 1x4b_A Heterogeneous nuclear r 99.8 6.2E-19 2.1E-23 139.2 9.9 88 174-270 26-113 (116)
65 2dgx_A KIAA0430 protein; RRM d 99.8 8E-19 2.7E-23 134.7 10.0 82 174-266 8-93 (96)
66 2cqg_A TDP-43, TAR DNA-binding 99.8 2.7E-18 9.4E-23 132.6 13.1 83 174-266 14-96 (103)
67 2cq4_A RNA binding motif prote 99.8 2.1E-19 7.2E-24 141.5 6.6 81 174-263 24-104 (114)
68 3ucg_A Polyadenylate-binding p 99.8 9.9E-19 3.4E-23 131.1 9.9 81 175-264 6-86 (89)
69 2cq1_A PTB-like protein L; RRM 99.8 3.2E-18 1.1E-22 134.2 13.2 80 173-266 13-94 (101)
70 2m2b_A RNA-binding protein 10; 99.8 5.6E-19 1.9E-23 143.1 9.1 83 173-264 21-109 (131)
71 2cqd_A RNA-binding region cont 99.8 2.3E-18 7.9E-23 136.0 12.4 81 174-263 16-96 (116)
72 2cpj_A Non-POU domain-containi 99.8 1.9E-18 6.3E-23 132.9 11.3 83 174-270 14-96 (99)
73 1x4d_A Matrin 3; structural ge 99.8 9.1E-19 3.1E-23 137.9 9.7 77 173-263 13-92 (102)
74 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.2E-18 4E-23 146.4 10.9 86 174-267 71-156 (165)
75 1wex_A Hypothetical protein (r 99.8 3.6E-18 1.2E-22 134.5 12.2 79 174-266 14-94 (104)
76 2jwn_A Embryonic polyadenylate 99.8 1.6E-18 5.5E-23 138.2 10.4 83 174-265 35-117 (124)
77 1x4c_A Splicing factor, argini 99.8 4.3E-18 1.5E-22 133.3 12.4 81 174-264 14-94 (108)
78 1why_A Hypothetical protein ri 99.8 2.7E-18 9.4E-23 131.4 11.0 78 174-265 16-95 (97)
79 2dgt_A RNA-binding protein 30; 99.8 3.7E-18 1.3E-22 129.5 11.4 81 174-270 9-89 (92)
80 2ek1_A RNA-binding protein 12; 99.8 6E-19 2.1E-23 134.1 7.0 80 175-262 15-94 (95)
81 3r27_A HnRNP L, heterogeneous 99.8 1.6E-18 5.6E-23 136.3 9.7 76 174-263 20-97 (100)
82 2kt5_A RNA and export factor-b 99.8 8.8E-18 3E-22 134.3 14.2 83 173-264 33-115 (124)
83 2err_A Ataxin-2-binding protei 99.8 1.2E-18 4.3E-23 136.9 8.9 80 174-263 28-107 (109)
84 3s7r_A Heterogeneous nuclear r 99.8 3.2E-18 1.1E-22 128.2 10.8 78 174-260 10-87 (87)
85 3lqv_A PRE-mRNA branch site pr 99.8 3E-18 1E-22 134.9 10.9 82 171-263 4-85 (115)
86 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-18 4.1E-23 138.2 8.6 79 174-266 15-95 (105)
87 1p1t_A Cleavage stimulation fa 99.8 1.5E-18 5E-23 134.0 8.5 83 174-264 7-89 (104)
88 2kn4_A Immunoglobulin G-bindin 99.8 2.9E-18 9.9E-23 142.0 10.9 85 174-266 69-153 (158)
89 1x5o_A RNA binding motif, sing 99.8 1E-17 3.4E-22 131.7 13.4 86 174-263 24-112 (114)
90 1wf1_A RNA-binding protein RAL 99.8 2.6E-18 9.1E-23 134.6 10.1 85 173-273 25-110 (110)
91 2j76_E EIF-4B, EIF4B, eukaryot 99.8 7.4E-19 2.5E-23 135.9 6.7 83 171-263 15-98 (100)
92 1wg5_A Heterogeneous nuclear r 99.8 7E-18 2.4E-22 131.4 12.2 83 174-266 14-97 (104)
93 2dgw_A Probable RNA-binding pr 99.8 5.5E-18 1.9E-22 128.1 11.0 79 174-263 9-87 (91)
94 3n9u_C Cleavage and polyadenyl 99.8 2.4E-18 8.4E-23 144.5 10.0 81 174-262 54-136 (156)
95 2cpd_A Apobec-1 stimulating pr 99.8 1.7E-17 5.7E-22 127.5 13.4 77 174-266 14-92 (99)
96 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 5E-18 1.7E-22 137.2 10.9 79 174-260 62-140 (140)
97 2lcw_A RNA-binding protein FUS 99.6 8.1E-20 2.8E-24 144.5 0.0 85 174-266 6-98 (116)
98 1s79_A Lupus LA protein; RRM, 99.7 2.6E-18 9E-23 134.7 8.6 78 175-262 11-88 (103)
99 2a3j_A U1 small nuclear ribonu 99.7 3.9E-18 1.3E-22 139.0 9.7 79 174-263 28-110 (127)
100 2cqh_A IGF-II mRNA-binding pro 99.7 2.5E-18 8.4E-23 130.5 8.0 82 174-270 7-90 (93)
101 2dnp_A RNA-binding protein 14; 99.7 7E-18 2.4E-22 127.4 10.4 80 174-269 8-87 (90)
102 2ad9_A Polypyrimidine tract-bi 99.7 6.8E-18 2.3E-22 136.6 10.7 79 174-266 30-110 (119)
103 1fj7_A Nucleolin RBD1, protein 99.7 5.9E-19 2E-23 135.9 4.1 84 174-267 16-99 (101)
104 2ytc_A PRE-mRNA-splicing facto 99.7 6.4E-18 2.2E-22 125.8 9.7 74 174-261 11-85 (85)
105 2nlw_A Eukaryotic translation 99.7 4.5E-18 1.5E-22 132.7 9.2 80 174-262 14-99 (105)
106 2rs2_A Musashi-1, RNA-binding 99.7 5.2E-18 1.8E-22 133.5 9.5 83 173-264 23-105 (109)
107 2lea_A Serine/arginine-rich sp 99.7 1.7E-18 5.6E-23 141.7 6.9 85 174-266 46-130 (135)
108 1x4g_A Nucleolysin TIAR; struc 99.7 9.1E-18 3.1E-22 131.3 10.7 78 174-265 24-101 (109)
109 2hvz_A Splicing factor, argini 99.7 3.8E-18 1.3E-22 131.4 8.4 77 176-265 1-77 (101)
110 2mss_A Protein (musashi1); RNA 99.7 2.1E-18 7.3E-23 125.7 6.4 75 177-260 1-75 (75)
111 2dis_A Unnamed protein product 99.7 3.8E-18 1.3E-22 132.9 8.3 82 174-263 7-92 (109)
112 2cpy_A RNA-binding protein 12; 99.7 3.4E-18 1.2E-22 135.3 8.1 81 173-263 13-94 (114)
113 1nu4_A U1A RNA binding domain; 99.7 4E-18 1.4E-22 129.9 7.5 80 174-264 7-90 (97)
114 1wel_A RNA-binding protein 12; 99.7 3.7E-18 1.3E-22 136.8 7.4 82 172-262 22-103 (124)
115 1fjc_A Nucleolin RBD2, protein 99.7 5.8E-18 2E-22 129.0 8.1 80 174-266 15-94 (96)
116 4f02_A Polyadenylate-binding p 99.7 1.2E-17 4.3E-22 144.9 11.0 85 171-263 11-95 (213)
117 2e5j_A Methenyltetrahydrofolat 99.7 1.3E-17 4.6E-22 127.7 9.9 79 174-265 18-96 (97)
118 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.9E-18 1E-22 125.2 5.9 76 176-260 1-76 (77)
119 2ki2_A SS-DNA binding protein 99.7 1.1E-18 3.8E-23 131.5 3.2 80 176-264 2-81 (90)
120 1x5p_A Negative elongation fac 99.7 6.8E-17 2.3E-21 123.8 13.3 80 173-268 13-92 (97)
121 2f3j_A RNA and export factor b 99.7 4.3E-17 1.5E-21 139.4 13.1 83 172-263 85-167 (177)
122 2db1_A Heterogeneous nuclear r 99.7 9.4E-18 3.2E-22 134.0 8.4 79 174-262 16-97 (118)
123 3q2s_C Cleavage and polyadenyl 99.7 7.3E-18 2.5E-22 149.7 8.5 80 174-261 67-148 (229)
124 2xnq_A Nuclear polyadenylated 99.7 2.7E-17 9.4E-22 126.8 10.6 76 172-263 19-95 (97)
125 2krb_A Eukaryotic translation 99.7 5.7E-18 2E-22 125.7 6.6 69 175-248 1-75 (81)
126 2dgu_A Heterogeneous nuclear r 99.7 2.9E-17 9.9E-22 127.2 10.7 74 174-263 10-83 (103)
127 2jvo_A Nucleolar protein 3; nu 99.7 2.3E-17 8E-22 129.8 10.0 77 174-266 30-106 (108)
128 2la4_A Nuclear and cytoplasmic 99.7 1.2E-17 4.1E-22 128.6 7.8 75 174-262 26-100 (101)
129 2e5i_A Heterogeneous nuclear r 99.7 6.8E-17 2.3E-21 131.5 12.5 76 176-263 26-102 (124)
130 3egn_A RNA-binding protein 40; 99.7 1.2E-17 4E-22 136.6 8.1 85 172-267 42-134 (143)
131 1x4f_A Matrin 3; structural ge 99.7 1.4E-17 4.7E-22 133.4 8.1 76 174-263 24-102 (112)
132 2kvi_A Nuclear polyadenylated 99.7 2.9E-17 9.9E-22 125.8 9.4 75 174-264 9-84 (96)
133 3md3_A Nuclear and cytoplasmic 99.7 9.5E-17 3.2E-21 131.1 12.7 81 174-262 86-166 (166)
134 2jvr_A Nucleolar protein 3; RN 99.7 1E-17 3.4E-22 133.7 6.7 80 173-264 26-106 (111)
135 1whx_A Hypothetical protein ri 99.7 2.4E-17 8.3E-22 130.2 8.5 75 175-263 10-84 (111)
136 3pgw_S U1-70K; protein-RNA com 99.7 5E-17 1.7E-21 157.1 12.4 83 173-263 100-182 (437)
137 1fxl_A Paraneoplastic encephal 99.7 8.6E-17 2.9E-21 131.5 11.3 81 175-263 2-82 (167)
138 2hgl_A HNRPF protein, heteroge 99.7 2.2E-17 7.4E-22 136.2 7.7 79 174-262 43-124 (136)
139 2qfj_A FBP-interacting repress 99.7 1.2E-16 4.2E-21 136.5 12.6 83 174-264 124-206 (216)
140 2lmi_A GRSF-1, G-rich sequence 99.7 1.4E-17 4.7E-22 130.3 5.9 80 173-262 9-91 (107)
141 1b7f_A Protein (SXL-lethal pro 99.7 6.4E-17 2.2E-21 132.9 10.1 83 174-264 2-84 (168)
142 2hgn_A Heterogeneous nuclear r 99.7 1E-17 3.4E-22 138.7 4.5 80 174-264 45-124 (139)
143 2e44_A Insulin-like growth fac 99.7 1E-16 3.4E-21 122.1 9.7 78 174-263 14-92 (96)
144 2wbr_A GW182, gawky, LD47780P; 99.7 4.8E-17 1.7E-21 125.3 7.7 73 175-261 7-79 (89)
145 1sjr_A Polypyrimidine tract-bi 99.7 7.4E-17 2.5E-21 137.3 9.6 78 174-263 45-124 (164)
146 3zzy_A Polypyrimidine tract-bi 99.7 1.4E-16 4.8E-21 130.8 10.6 77 176-263 29-106 (130)
147 3beg_B Splicing factor, argini 99.7 1.1E-16 3.9E-21 126.9 9.7 80 174-263 15-94 (115)
148 1iqt_A AUF1, heterogeneous nuc 99.7 1E-17 3.6E-22 121.8 3.3 75 177-260 1-75 (75)
149 2i2y_A Fusion protein consists 99.7 1.2E-16 3.9E-21 131.7 9.8 78 174-264 72-149 (150)
150 2e5g_A U6 snRNA-specific termi 99.7 2.4E-16 8.2E-21 120.0 10.8 77 174-264 7-83 (94)
151 2yh0_A Splicing factor U2AF 65 99.7 1.9E-16 6.5E-21 133.6 11.2 85 173-265 112-196 (198)
152 1l3k_A Heterogeneous nuclear r 99.7 1.9E-16 6.6E-21 133.4 10.6 82 174-264 103-184 (196)
153 2g4b_A Splicing factor U2AF 65 99.7 2.3E-16 7.8E-21 130.3 10.7 80 174-261 93-172 (172)
154 2dnn_A RNA-binding protein 12; 99.7 1.3E-16 4.5E-21 126.6 8.8 77 175-262 16-92 (109)
155 1wg1_A KIAA1579 protein, homol 99.7 2.3E-16 7.9E-21 118.9 9.1 74 175-263 5-78 (88)
156 4f02_A Polyadenylate-binding p 99.7 2.5E-16 8.5E-21 136.7 10.3 78 175-262 103-180 (213)
157 2xs2_A Deleted in azoospermia- 99.7 6E-17 2E-21 124.8 5.3 79 174-263 8-86 (102)
158 3md3_A Nuclear and cytoplasmic 99.7 3.8E-16 1.3E-20 127.5 10.3 80 176-264 1-80 (166)
159 2cq2_A Hypothetical protein LO 99.7 1.6E-16 5.5E-21 127.6 7.9 77 173-263 23-106 (114)
160 2hgm_A HNRPF protein, heteroge 99.7 1.3E-16 4.6E-21 130.0 7.5 78 174-262 41-120 (126)
161 1b7f_A Protein (SXL-lethal pro 99.7 8.7E-16 3E-20 126.1 12.2 81 174-260 88-168 (168)
162 1fxl_A Paraneoplastic encephal 99.7 6E-16 2E-20 126.4 11.1 80 175-260 88-167 (167)
163 1l3k_A Heterogeneous nuclear r 99.7 3.3E-16 1.1E-20 132.0 9.8 82 173-263 11-92 (196)
164 3tyt_A Heterogeneous nuclear r 99.6 4.1E-16 1.4E-20 135.9 10.2 77 174-263 3-80 (205)
165 3nmr_A Cugbp ELAV-like family 99.6 5.1E-16 1.8E-20 128.0 10.2 82 174-261 94-175 (175)
166 2dha_A FLJ20171 protein; RRM d 99.6 9.5E-17 3.2E-21 130.2 5.0 79 174-262 22-104 (123)
167 2qfj_A FBP-interacting repress 99.6 7.9E-16 2.7E-20 131.5 10.3 82 174-263 27-108 (216)
168 3d2w_A TAR DNA-binding protein 99.6 9.1E-16 3.1E-20 116.7 9.3 76 174-264 10-85 (89)
169 2bz2_A Negative elongation fac 99.6 9.1E-16 3.1E-20 123.4 9.6 77 172-264 36-112 (121)
170 2diu_A KIAA0430 protein; struc 99.6 7.5E-16 2.5E-20 120.0 8.7 71 175-263 8-84 (96)
171 1wf0_A TDP-43, TAR DNA-binding 99.6 3.1E-16 1.1E-20 117.9 6.2 77 174-267 4-82 (88)
172 2cjk_A Nuclear polyadenylated 99.6 3.5E-16 1.2E-20 128.6 7.0 80 175-263 87-166 (167)
173 2dnl_A Cytoplasmic polyadenyla 99.6 5.4E-16 1.9E-20 122.5 7.5 71 174-245 7-80 (114)
174 3nmr_A Cugbp ELAV-like family 99.6 1.8E-15 6.2E-20 124.7 10.7 85 174-263 2-88 (175)
175 3pgw_A U1-A; protein-RNA compl 99.6 2E-15 6.8E-20 135.1 11.4 80 174-264 8-91 (282)
176 2hzc_A Splicing factor U2AF 65 99.6 8.1E-16 2.8E-20 114.6 6.9 71 174-259 5-86 (87)
177 3pgw_A U1-A; protein-RNA compl 99.6 1E-14 3.5E-19 130.5 15.0 76 174-262 206-282 (282)
178 2pe8_A Splicing factor 45; RRM 99.6 5.2E-15 1.8E-19 116.5 10.2 83 173-262 6-93 (105)
179 1fje_B Nucleolin RBD12, protei 99.6 4E-15 1.4E-19 123.5 9.6 77 174-263 98-174 (175)
180 2cjk_A Nuclear polyadenylated 99.6 2.3E-15 7.9E-20 123.6 7.6 78 175-262 3-80 (167)
181 2adc_A Polypyrimidine tract-bi 99.6 3.6E-15 1.2E-19 130.7 9.3 77 174-263 33-110 (229)
182 2voo_A Lupus LA protein; RNA-b 99.6 7.7E-15 2.6E-19 126.9 10.2 79 175-263 109-187 (193)
183 2j8a_A Histone-lysine N-methyl 99.6 2.3E-15 7.8E-20 123.7 6.5 79 176-262 3-95 (136)
184 3tyt_A Heterogeneous nuclear r 99.6 3.2E-15 1.1E-19 130.2 7.6 81 174-260 122-204 (205)
185 3u1l_A PRE-mRNA-splicing facto 99.6 5.6E-15 1.9E-19 132.8 8.8 76 174-263 133-229 (240)
186 2dit_A HIV TAT specific factor 99.6 3.5E-14 1.2E-18 111.9 11.5 80 172-263 12-102 (112)
187 3smz_A Protein raver-1, ribonu 99.5 1.1E-14 3.7E-19 130.5 9.7 83 174-265 183-266 (284)
188 1qm9_A Polypyrimidine tract-bi 99.5 2.6E-14 8.8E-19 121.3 10.5 77 174-263 119-197 (198)
189 2adc_A Polypyrimidine tract-bi 99.5 2.6E-14 9E-19 125.2 10.2 77 174-263 150-228 (229)
190 1qm9_A Polypyrimidine tract-bi 99.5 9.3E-15 3.2E-19 124.0 7.0 76 175-263 3-79 (198)
191 2ghp_A U4/U6 snRNA-associated 99.5 1.3E-14 4.4E-19 130.4 8.3 82 174-263 209-291 (292)
192 3smz_A Protein raver-1, ribonu 99.5 4E-14 1.4E-18 126.8 10.6 82 175-264 95-176 (284)
193 1fje_B Nucleolin RBD12, protei 99.5 3.7E-15 1.3E-19 123.7 3.1 82 172-263 10-91 (175)
194 3sde_A Paraspeckle component 1 99.5 4.7E-14 1.6E-18 126.0 8.9 76 173-262 20-95 (261)
195 3v4m_A Splicing factor U2AF 65 99.5 1.1E-13 3.6E-18 108.9 8.4 83 174-262 4-96 (105)
196 3sde_A Paraspeckle component 1 99.5 1.1E-13 3.9E-18 123.5 9.6 80 175-263 96-179 (261)
197 2ghp_A U4/U6 snRNA-associated 99.5 9E-14 3.1E-18 124.9 8.0 80 175-263 117-197 (292)
198 2g4b_A Splicing factor U2AF 65 99.5 1.1E-13 3.8E-18 114.0 7.9 75 175-264 4-89 (172)
199 2d9o_A DNAJ (HSP40) homolog, s 99.5 5.4E-13 1.8E-17 104.4 11.2 76 175-265 10-92 (100)
200 3tht_A Alkylated DNA repair pr 99.4 2E-13 6.7E-18 128.6 9.6 83 170-261 13-97 (345)
201 1jmt_A Splicing factor U2AF 35 99.4 3.7E-14 1.3E-18 111.2 3.7 73 179-260 19-103 (104)
202 2yh0_A Splicing factor U2AF 65 99.4 1.9E-13 6.5E-18 115.1 8.0 74 175-263 4-88 (198)
203 3ue2_A Poly(U)-binding-splicin 99.4 6.2E-13 2.1E-17 106.9 9.9 84 174-262 19-108 (118)
204 3s6e_A RNA-binding protein 39; 99.3 1.4E-11 4.9E-16 98.4 9.3 79 171-261 3-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.1 3.2E-10 1.1E-14 87.4 8.0 74 176-266 8-89 (91)
206 1owx_A Lupus LA protein, SS-B, 99.0 9.3E-10 3.2E-14 89.1 9.9 72 174-259 17-92 (121)
207 3dxb_A Thioredoxin N-terminall 98.8 1.1E-08 3.8E-13 88.8 9.2 70 187-261 141-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.8 4.2E-09 1.4E-13 81.7 4.3 68 176-260 16-92 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.3 1.3E-06 4.4E-11 69.5 7.0 70 175-258 21-95 (117)
210 1wey_A Calcipressin 1; structu 97.8 1.8E-05 6.3E-10 62.1 5.0 73 176-262 6-83 (104)
211 1whv_A Poly(A)-specific ribonu 97.8 0.00013 4.5E-09 56.7 8.8 55 175-241 16-70 (100)
212 1uw4_A UPF3X; nonsense mediate 97.7 0.00042 1.4E-08 53.1 10.7 87 176-263 2-88 (91)
213 3ctr_A Poly(A)-specific ribonu 97.0 0.00088 3E-08 52.2 5.4 54 176-241 7-60 (101)
214 2l08_A Regulator of nonsense t 97.0 0.002 6.9E-08 49.9 6.9 87 175-262 9-95 (97)
215 2dhx_A Poly (ADP-ribose) polym 96.6 0.0056 1.9E-07 47.9 7.3 67 175-258 8-79 (104)
216 2kn4_A Immunoglobulin G-bindin 95.9 0.0054 1.9E-07 49.6 3.8 35 204-243 2-36 (158)
217 1wwh_A Nucleoporin 35, nucleop 95.8 0.031 1.1E-06 44.7 7.6 64 174-248 23-86 (119)
218 3pq1_A Poly(A) RNA polymerase; 95.3 0.0069 2.4E-07 58.8 2.6 56 174-238 52-107 (464)
219 2i2y_A Fusion protein consists 94.5 0.012 4.2E-07 47.2 1.7 40 217-262 10-50 (150)
220 3d45_A Poly(A)-specific ribonu 92.8 0.23 7.8E-06 48.5 7.6 55 175-241 440-494 (507)
221 3p3d_A Nucleoporin 53; structu 87.8 0.45 1.6E-05 38.6 3.9 71 175-248 7-89 (132)
222 2g0c_A ATP-dependent RNA helic 62.0 14 0.00048 25.8 5.1 68 177-261 2-75 (76)
223 4f25_A Polyadenylate-binding p 56.1 2.4 8.1E-05 32.1 0.0 17 175-191 97-113 (115)
224 4e8u_A Putative uncharacterize 30.8 1.1E+02 0.0039 25.4 6.4 52 177-234 14-76 (172)
225 3fry_A Probable copper-exporti 25.1 1.4E+02 0.0048 19.6 5.2 59 176-245 7-65 (73)
No 1
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=145.89 Aligned_cols=91 Identities=24% Similarity=0.350 Sum_probs=81.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|++|+++.++.+ ++++|||||+|.+.++|++|++.|||..|.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 75 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT---GRSKGYGFITFSDSECARRALEQLNGFELAGR----- 75 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSS---CCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS-----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCC---CceeeEEEEEECCHHHHHHHHHHhCCCeeCCc-----
Confidence 5799999999999999999999999999999999988764 88999999999999999999999999999998
Q ss_pred cEEEEeccCCCCCCCCCCC
Q 023903 254 FLRLQFSRNPGPRSVFGAR 272 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ggg~~ 272 (275)
.|+|+|++.+..+++++++
T Consensus 76 ~l~V~~a~~~~~~~~~~~~ 94 (95)
T 2dnz_A 76 PMRVGHVTERLDGGSGPSS 94 (95)
T ss_dssp CCEEEESSCCCCCCCCCCC
T ss_pred EEEEEEcccccCCCCCCCC
Confidence 6999999987655444433
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=4.4e-21 Score=149.17 Aligned_cols=80 Identities=23% Similarity=0.434 Sum_probs=75.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||+|||.++|+++|+++|++||.|++|+++.++.+ |+++|||||+|.+.++|++|++.|||..|.|+ .
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr-----~ 90 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA---GHSLGYGFVNYVTAKDAERAINTLNGLRLQSK-----T 90 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSS---CCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCC---CcccccEEEEECCHHHHHHHHHHhCCCEECCE-----E
Confidence 578999999999999999999999999999999998765 89999999999999999999999999999998 7
Q ss_pred EEEEeccC
Q 023903 255 LRLQFSRN 262 (275)
Q Consensus 255 LrV~~Ar~ 262 (275)
|+|+||++
T Consensus 91 l~V~~AkP 98 (99)
T 4fxv_A 91 IKVSYARP 98 (99)
T ss_dssp CEEEECCB
T ss_pred EEEEEeeC
Confidence 99999974
No 3
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=145.06 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=82.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
.+.++|||+|||.++|+++|+++|++||.|+.|+++.++.+ ++++|||||+|.+.++|++|++.||+..|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 85 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVT---GQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK---- 85 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSS---CSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CcCCcEEEEEECCHHHHHHHHHHhCCCeECCe----
Confidence 35799999999999999999999999999999999988754 88999999999999999999999999999998
Q ss_pred ccEEEEeccCCCCCCCCCCC
Q 023903 253 KFLRLQFSRNPGPRSVFGAR 272 (275)
Q Consensus 253 ~~LrV~~Ar~~~~r~ggg~~ 272 (275)
.|+|+|++.+..+...+.+
T Consensus 86 -~l~v~~a~~~~~~~~~~~~ 104 (105)
T 1x5u_A 86 -PIRVNKASAHNKNLSGPSS 104 (105)
T ss_dssp -BCEEEETTTTSCCCCCCCC
T ss_pred -EEEEEECCCCCcCCCCCCC
Confidence 7999999987655544444
No 4
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4.9e-20 Score=141.55 Aligned_cols=89 Identities=18% Similarity=0.295 Sum_probs=80.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++++++|+++|++||.|++|+|+.++.+ ++++|||||+|.+.++|++|++ ||+..|.++
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~----- 79 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEK---QRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK----- 79 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTT---CSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CCCCceEEEEECCHHHHHHHHH-hCCCEECCe-----
Confidence 4699999999999999999999999999999999988654 8899999999999999999998 999999998
Q ss_pred cEEEEeccCCCCCCCCCC
Q 023903 254 FLRLQFSRNPGPRSVFGA 271 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ggg~ 271 (275)
.|+|+|++.+..+....+
T Consensus 80 ~l~V~~a~~~~~~~~~~~ 97 (99)
T 2dgs_A 80 KVEVKRAEPRDSKSSGPS 97 (99)
T ss_dssp BCEEEECCCCCCCCCCSS
T ss_pred EEEEEECCCCcccCCCCC
Confidence 799999998755544433
No 5
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2e-20 Score=144.31 Aligned_cols=87 Identities=23% Similarity=0.345 Sum_probs=79.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|+.|+|+.++.+ ++++|||||+|.+.++|++|++.||+..|.++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 82 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRET---QRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR----- 82 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSS---CSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC-----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CCcccEEEEEECCHHHHHHHHHHhCCCEECCe-----
Confidence 4699999999999999999999999999999999987654 88999999999999999999999999999998
Q ss_pred cEEEEeccCCCCCCC
Q 023903 254 FLRLQFSRNPGPRSV 268 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~g 268 (275)
.|+|+|++.+.....
T Consensus 83 ~l~v~~a~~~~~~~~ 97 (102)
T 1x5s_A 83 QIRVDQAGKSSDNRS 97 (102)
T ss_dssp CCEEEEEECCCCCCC
T ss_pred EEEEEECCCCCCCCC
Confidence 699999988754443
No 6
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=3.8e-20 Score=143.37 Aligned_cols=94 Identities=22% Similarity=0.405 Sum_probs=82.0
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 169 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 169 ~~pp~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
..++.+.++|||+|||.++|+++|+++|++|| |++|+|+.++.+ ++++|||||+|.+.++|++|+ .||+..|.++
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 83 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDT---DKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR 83 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSS---CSEEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCC---CccceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence 34445679999999999999999999999995 999999988765 899999999999999999999 8999999998
Q ss_pred CCCCccEEEEeccCCCCCCCCCCC
Q 023903 249 DPDSKFLRLQFSRNPGPRSVFGAR 272 (275)
Q Consensus 249 ~~~~~~LrV~~Ar~~~~r~ggg~~ 272 (275)
.|+|+|++....+..+.++
T Consensus 84 -----~l~V~~a~~~~~~~~~~~~ 102 (103)
T 2dng_A 84 -----SLRVDIAEGRKQDKSGPSS 102 (103)
T ss_dssp -----ECEEEECCCCCCCCSSCCC
T ss_pred -----EEEEEEecCCCCCCCCCCC
Confidence 7999999987655444443
No 7
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.2e-20 Score=141.93 Aligned_cols=89 Identities=19% Similarity=0.296 Sum_probs=80.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 171 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 171 pp~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
.+.+.++|||+|||+++|+++|+++|++||.|+.|+|+.+ + ++++|||||+|.+.++|++|++.|||..|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-- 83 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVATK-- 83 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--S---SSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--C---CCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc--
Confidence 3445799999999999999999999999999999999987 2 88999999999999999999999999999998
Q ss_pred CCccEEEEeccCCCCCCCC
Q 023903 251 DSKFLRLQFSRNPGPRSVF 269 (275)
Q Consensus 251 ~~~~LrV~~Ar~~~~r~gg 269 (275)
.|+|+|++.+..+...
T Consensus 84 ---~l~V~~a~~~~~~~~~ 99 (103)
T 2d9p_A 84 ---PLYVALAQRKEERQSG 99 (103)
T ss_dssp ---BCEEEECSSCCCCCCC
T ss_pred ---EEEEEEecccccCCCC
Confidence 7999999987555443
No 8
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-20 Score=144.42 Aligned_cols=90 Identities=18% Similarity=0.287 Sum_probs=81.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|++|+|+.++.+ ++++|||||+|.+.++|++|++.||+..|.++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 82 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET---EKHRGFAFVEFELAEDAAAAIDNMNESELFGR----- 82 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSS---CCCSSEEEECCSSHHHHHHHHHHHTTEEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECCc-----
Confidence 4689999999999999999999999999999999988654 88999999999999999999999999999998
Q ss_pred cEEEEeccCCCCCCCCCC
Q 023903 254 FLRLQFSRNPGPRSVFGA 271 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ggg~ 271 (275)
.|+|+|++.+..+....+
T Consensus 83 ~l~V~~a~~~~~~~~~~~ 100 (102)
T 2cqb_A 83 TIRVNLAKPMRIKESGPS 100 (102)
T ss_dssp EEEEEECCCCCCCCCCCC
T ss_pred EEEEEeCCCCCCCCCCCC
Confidence 799999998765554433
No 9
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=4.4e-20 Score=145.66 Aligned_cols=86 Identities=20% Similarity=0.466 Sum_probs=79.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|++|+|+.++.+ ++++|||||+|.+.++|++|++.||+..|.++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 95 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQT---NLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK----- 95 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSS---CSEEEEEEEECSSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC---CCcCccEEEEECCHHHHHHHHHHcCCCEECCE-----
Confidence 4689999999999999999999999999999999988754 89999999999999999999999999999998
Q ss_pred cEEEEeccCCCCCC
Q 023903 254 FLRLQFSRNPGPRS 267 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ 267 (275)
.|+|+|++.+..+.
T Consensus 96 ~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 96 RLKVQLKRSKNDSK 109 (115)
T ss_dssp ECEEECCCCSCCCC
T ss_pred EEEEEEcCCCCcCC
Confidence 79999998865443
No 10
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.5e-20 Score=145.59 Aligned_cols=90 Identities=22% Similarity=0.362 Sum_probs=80.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEE--------EEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYK--------EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR 244 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~--------~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~ 244 (275)
.++++|||+|||.++|+++|+++|++||.|. .|+|+.++.+ ++++|||||+|.+.++|++|++.|||..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKET---GKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTT---CSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCC---CCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3579999999999999999999999999999 6999887654 8999999999999999999999999999
Q ss_pred eCCCCCCCccEEEEeccCCCCCCCCC
Q 023903 245 MDEDDPDSKFLRLQFSRNPGPRSVFG 270 (275)
Q Consensus 245 ~~g~~~~~~~LrV~~Ar~~~~r~ggg 270 (275)
|.++ .|+|+|++.+..+..+.
T Consensus 90 ~~g~-----~l~V~~a~~~~~~~~~~ 110 (113)
T 2cpe_A 90 FQGS-----KLKVSLARKKPPMNSGP 110 (113)
T ss_dssp ETTE-----ECEEECSSCCCCSTTCC
T ss_pred cCCC-----EEEEEECCCCCCCCCCC
Confidence 9998 79999999876554433
No 11
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.8e-20 Score=142.09 Aligned_cols=85 Identities=21% Similarity=0.448 Sum_probs=78.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|+.|+|+.++.+ ++++|||||+|.+.++|++|++.|||..|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 85 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTT---GQSKGFAFISFHRREDAARAIAGVSGFGYDHL----- 85 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSS---CSEEEEEEEEESSHHHHHHHHHHTTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCC---CceeeEEEEEECCHHHHHHHHHHcCCCeeCCc-----
Confidence 4799999999999999999999999999999999988654 89999999999999999999999999999998
Q ss_pred cEEEEeccCCCCC
Q 023903 254 FLRLQFSRNPGPR 266 (275)
Q Consensus 254 ~LrV~~Ar~~~~r 266 (275)
.|+|+|++.+..+
T Consensus 86 ~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 86 ILNVEWAKPSTNS 98 (103)
T ss_dssp ECEEEESSCCCCS
T ss_pred EEEEEECCCCCCC
Confidence 7999999886544
No 12
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.5e-20 Score=142.73 Aligned_cols=86 Identities=22% Similarity=0.277 Sum_probs=79.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|..|+|+.++.+ ++++|||||+|.+.++|++|++.|||..|.++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 83 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHT---KAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR----- 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSS---CSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB-----
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC---CCCCeEEEEEECCHHHHHHHHHHcCCCEECCc-----
Confidence 4699999999999999999999999999999999988765 88999999999999999999999999999998
Q ss_pred cEEEEeccCCCCCC
Q 023903 254 FLRLQFSRNPGPRS 267 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ 267 (275)
.|+|+|++....+.
T Consensus 84 ~l~V~~a~~~~~~~ 97 (103)
T 2dnm_A 84 ELRVQVARYGRRDL 97 (103)
T ss_dssp CCEEEECSSCCSCC
T ss_pred EEEEEECCcCCCCC
Confidence 69999999765443
No 13
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9e-20 Score=141.54 Aligned_cols=86 Identities=27% Similarity=0.365 Sum_probs=78.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeec-CcccCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK-ESKLRGGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~-~~~~~~G~skGfaFVeF~~~~~A~~Al~~L-nG~~~~g~~~~ 251 (275)
++++|||+|||.++|+++|+++|++||.|+.|+|+.+ +.+ ++++|||||+|.+.++|++|++.| |+..|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~--- 87 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGT---GAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR--- 87 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSS---CSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC---
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCC---CCcCceEEEEECCHHHHHHHHHHhccCCeECCC---
Confidence 4689999999999999999999999999999999887 443 889999999999999999999999 99999998
Q ss_pred CccEEEEeccCCCCCC
Q 023903 252 SKFLRLQFSRNPGPRS 267 (275)
Q Consensus 252 ~~~LrV~~Ar~~~~r~ 267 (275)
.|+|+|++......
T Consensus 88 --~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 88 --RLVLEWADSEVTVQ 101 (107)
T ss_dssp --BCEEEECCCCCCCC
T ss_pred --EEEEEeCCCCCCCC
Confidence 79999998875443
No 14
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=4.5e-20 Score=146.32 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||+++||++|+++|++||.|++|+|+.++.+ ++++|||||+|.+.++|++|++.|||..|.|+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t---g~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr----- 76 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRT---RKHLGLARVLFTSTRGAKETVKNLHLTSVMGN----- 76 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCC---CceeeEEEEEECCHHHHHHHHHHhCCCEECCe-----
Confidence 3589999999999999999999999999999999998765 89999999999999999999999999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|++++..
T Consensus 77 ~i~V~~a~~~ 86 (110)
T 3s8s_A 77 IIHAQLDIKG 86 (110)
T ss_dssp ECEEEECSTT
T ss_pred EEEEEECCCC
Confidence 7999999754
No 15
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=3.6e-20 Score=143.79 Aligned_cols=89 Identities=13% Similarity=0.189 Sum_probs=79.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCee---CCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM---DEDD 249 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~---~g~~ 249 (275)
.+.++|||+|||.++|+++|+++|++||.|++|+|+.++.+ ++++|||||+|.+.++|++|++.||+..+ .++
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~- 86 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT---GMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR- 86 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSS---CSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc-
Confidence 34689999999999999999999999999999999988765 88999999999999999999999999987 666
Q ss_pred CCCccEEEEeccCCCCCCCC
Q 023903 250 PDSKFLRLQFSRNPGPRSVF 269 (275)
Q Consensus 250 ~~~~~LrV~~Ar~~~~r~gg 269 (275)
.|+|+|++.+..+..+
T Consensus 87 ----~l~v~~a~~~~~~~~~ 102 (106)
T 2dgp_A 87 ----PIQVKPADSESRGGSG 102 (106)
T ss_dssp ----CCEEEECCCCSCCCCC
T ss_pred ----eEEEEECCcccccCCC
Confidence 6999999987555443
No 16
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=141.87 Aligned_cols=83 Identities=25% Similarity=0.478 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|+.|+|..+ ++++|||||+|.+.++|++|++.||+..|.++
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 89 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR------RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY----- 89 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS------SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe-----
Confidence 4689999999999999999999999999999999654 45789999999999999999999999999998
Q ss_pred cEEEEeccCCCCCC
Q 023903 254 FLRLQFSRNPGPRS 267 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ 267 (275)
.|+|+|++....+.
T Consensus 90 ~l~V~~a~~~~~~~ 103 (109)
T 1x4a_A 90 RLRVEFPRSGRGTG 103 (109)
T ss_dssp ECEEECCCCCCCCC
T ss_pred EEEEEEcccCCCCC
Confidence 79999998865443
No 17
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.5e-20 Score=141.99 Aligned_cols=87 Identities=13% Similarity=0.283 Sum_probs=79.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEE-EEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~v-rl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
++++|||+|||.++|+++|+++|++||.|..+ +|+.++.+ ++++|||||+|.+.++|++|++.|||..|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 76 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDT---GNSKGYAFINFASFDASDAAIEAMNGQYLCNR---- 76 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTT---CSCCSEEEEEBSSHHHHHHHHHTTTTCEETTE----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCC---CCcCeEEEEEECCHHHHHHHHHHcCCCEECCE----
Confidence 46999999999999999999999999999999 99887554 88999999999999999999999999999998
Q ss_pred ccEEEEeccCCCCCCC
Q 023903 253 KFLRLQFSRNPGPRSV 268 (275)
Q Consensus 253 ~~LrV~~Ar~~~~r~g 268 (275)
.|+|+|++.+..+..
T Consensus 77 -~l~v~~a~~~~~~~~ 91 (96)
T 1x5t_A 77 -PITVSYAFKKDSKGS 91 (96)
T ss_dssp -ECEEEESCCCCCCCC
T ss_pred -EEEEEEecccCCCCC
Confidence 799999988754443
No 18
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8.8e-20 Score=139.90 Aligned_cols=86 Identities=22% Similarity=0.318 Sum_probs=79.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ ++++|||||+|.+.++|++|++.|||..|.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 78 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLT---KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR----- 78 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTT---CCCCSEEEEEESSHHHHHHHHHHTTTEESSSC-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCC---CCcCeEEEEEECCHHHHHHHHHHhCCCEECCc-----
Confidence 4689999999999999999999999999999999988754 88999999999999999999999999999998
Q ss_pred cEEEEeccCCCCCC
Q 023903 254 FLRLQFSRNPGPRS 267 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ 267 (275)
.|+|+|++.+..+.
T Consensus 79 ~l~V~~a~~~~~~~ 92 (99)
T 1whw_A 79 MLHVLPSTIKKEAS 92 (99)
T ss_dssp EEEEEECCCCSTTC
T ss_pred EEEEEEcCCCcccc
Confidence 79999999875443
No 19
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=141.82 Aligned_cols=88 Identities=19% Similarity=0.351 Sum_probs=80.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhC------CCeeC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ------GYRMD 246 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~Ln------G~~~~ 246 (275)
.++++|||+|||+++|+++|+++|++||.|..|+|+.++.+ ++++|||||+|.+.++|++|++.|| +..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDT---EHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSS---CCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 35789999999999999999999999999999999988765 8899999999999999999999999 99999
Q ss_pred CCCCCCccEEEEeccCCCCCCC
Q 023903 247 EDDPDSKFLRLQFSRNPGPRSV 268 (275)
Q Consensus 247 g~~~~~~~LrV~~Ar~~~~r~g 268 (275)
++ .|+|+|++....+..
T Consensus 90 g~-----~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 90 GR-----QLKVDLAVTRDEAAS 106 (111)
T ss_dssp SC-----EEEEECCCCCCCCCC
T ss_pred CE-----EEEEEECCCCccCCC
Confidence 98 799999988654443
No 20
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=8.2e-20 Score=140.47 Aligned_cols=85 Identities=21% Similarity=0.345 Sum_probs=77.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEE--------EEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHh
Q 023903 169 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSAL 240 (275)
Q Consensus 169 ~~pp~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~--------vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~L 240 (275)
..++.+.++|||+|||.++|+++|+++|++||.|.+ ++++.++.+ |+++|||||+|.+.++|++|++.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~---g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET---GKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTT---CSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCC---CCeeeEEEEEECCHHHHHHHHHHh
Confidence 344456899999999999999999999999999999 999988665 899999999999999999999999
Q ss_pred CCCeeCCCCCCCccEEEEecc
Q 023903 241 QGYRMDEDDPDSKFLRLQFSR 261 (275)
Q Consensus 241 nG~~~~g~~~~~~~LrV~~Ar 261 (275)
||..+.++ .|+|+||+
T Consensus 84 ~g~~~~g~-----~l~V~~A~ 99 (99)
T 2la6_A 84 DGKEFSGN-----PIKVSFAT 99 (99)
T ss_dssp TTCBSSSS-----BCEEEECC
T ss_pred CCCEeCCc-----EEEEEecC
Confidence 99999998 79999985
No 21
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=140.24 Aligned_cols=85 Identities=24% Similarity=0.406 Sum_probs=77.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|++|+|+.++ +.++|||||+|.+.++|++|++.||+..|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 83 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH-----TSNDPYCFVEFYEHRDAAAALAAMNGRKILGK----- 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC-----CSSCCEEEEEESSHHHHHHHHHHHTTEEETTE-----
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC-----CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCC-----
Confidence 47999999999999999999999999999999999875 34679999999999999999999999999998
Q ss_pred cEEEEeccCCCCCCC
Q 023903 254 FLRLQFSRNPGPRSV 268 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~g 268 (275)
.|+|+|++.+..+..
T Consensus 84 ~l~V~~a~~~~~~~~ 98 (103)
T 2cqi_A 84 EVKVNWATTPSSQKS 98 (103)
T ss_dssp EEEEEECCCTTCCCC
T ss_pred eEEEEECCCCccccc
Confidence 799999998755443
No 22
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.4e-20 Score=141.63 Aligned_cols=92 Identities=21% Similarity=0.297 Sum_probs=79.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCC
Q 023903 170 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 249 (275)
Q Consensus 170 ~pp~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~ 249 (275)
.+..+.++|||+|||+++|+++|+++|++|| |++|+|+.++.+ .|+++|||||+|.+.++|++|+ .||+..|.++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~--~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~- 84 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN--PERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK- 84 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSC--TTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE-
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCC--CCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc-
Confidence 3444579999999999999999999999999 999999987642 1788999999999999999999 9999999998
Q ss_pred CCCccEEEEeccCCCCCCCCC
Q 023903 250 PDSKFLRLQFSRNPGPRSVFG 270 (275)
Q Consensus 250 ~~~~~LrV~~Ar~~~~r~ggg 270 (275)
.|+|+|++.+..+..++
T Consensus 85 ----~l~V~~a~~~~~~~~~~ 101 (104)
T 1wi8_A 85 ----RIRVDVADQAQDKDSGP 101 (104)
T ss_dssp ----ECEEEECCCCCCCCCCC
T ss_pred ----EEEEEEccCCCCCCCCC
Confidence 79999999875554433
No 23
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=141.40 Aligned_cols=88 Identities=22% Similarity=0.427 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEE-EEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYK-EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~-~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
++++|||+|||.++++++|+++|++||.|+ +|+++.++.+ ++++|||||+|.+.++|++|++.|||..+.++.. .
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~-~ 83 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLT---GIPAGYCFVEFADLATAEKCLHKINGKPLPGATP-A 83 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSS---CCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS-C
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCC---CCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc-c
Confidence 479999999999999999999999999999 9999988765 8999999999999999999999999999999821 1
Q ss_pred ccEEEEeccCCCC
Q 023903 253 KFLRLQFSRNPGP 265 (275)
Q Consensus 253 ~~LrV~~Ar~~~~ 265 (275)
..|+|+||+..+.
T Consensus 84 ~~l~v~~a~~~~~ 96 (99)
T 2div_A 84 KRFKLNYATYSGP 96 (99)
T ss_dssp EECCEEETTCCSS
T ss_pred eeEEEeecCCCCC
Confidence 1199999987653
No 24
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=147.08 Aligned_cols=87 Identities=20% Similarity=0.376 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 172 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 172 p~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
+...++|||+|||.++|+++|+++|++||.|++|+|+.++.+ ++++|||||+|.+.++|++|++.|||..|.++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--- 112 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRET---RQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK--- 112 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTT---TEEEEEEEEEESSHHHHHHHHHHTTTEECSSC---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECCe---
Confidence 345799999999999999999999999999999999988764 88999999999999999999999999999998
Q ss_pred CccEEEEeccCCCCC
Q 023903 252 SKFLRLQFSRNPGPR 266 (275)
Q Consensus 252 ~~~LrV~~Ar~~~~r 266 (275)
.|+|+|++....+
T Consensus 113 --~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 113 --RLKVALAASGHQR 125 (139)
T ss_dssp --EEEEEESSCCCCC
T ss_pred --EEEEEECCCCCCC
Confidence 7999999886433
No 25
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=4.8e-20 Score=147.49 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|..|+|+.++.+ ++++|||||+|.+.++|++|++.|||..|.++
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 92 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRT---GYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ----- 92 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTT---SSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHhCCCeeCCe-----
Confidence 4689999999999999999999999999999999988654 88999999999999999999999999999998
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
.|+|+|++...
T Consensus 93 ~l~v~~a~~~~ 103 (126)
T 3ex7_B 93 PISVDWCFVRG 103 (126)
T ss_dssp BCEEEESEESS
T ss_pred EEEEEEecCCC
Confidence 79999997653
No 26
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.2e-20 Score=140.14 Aligned_cols=88 Identities=24% Similarity=0.317 Sum_probs=77.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|+.|+++.++....+++++|||||+|.+.++|++|++.|||..|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 78 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH----- 78 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe-----
Confidence 468999999999999999999999999999999998764110148899999999999999999999999999998
Q ss_pred cEEEEeccCCCCC
Q 023903 254 FLRLQFSRNPGPR 266 (275)
Q Consensus 254 ~LrV~~Ar~~~~r 266 (275)
.|+|+|++.....
T Consensus 79 ~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 79 KLEVRISERATKP 91 (98)
T ss_dssp ECEEECSSCSSCC
T ss_pred EEEEEEccCCCCC
Confidence 7999999886443
No 27
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=6.4e-20 Score=137.09 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|.+|+++.++.+ ++++|||||+|.+.++|++|++.|||..+.++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 76 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMAT---GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR----- 76 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECCe-----
Confidence 4689999999999999999999999999999999988654 88999999999999999999999999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|+|++.+
T Consensus 77 ~l~v~~a~~k 86 (87)
T 3bs9_A 77 QIRTNWATRK 86 (87)
T ss_dssp ECEEEEEC--
T ss_pred EEEEEecCCC
Confidence 7999999763
No 28
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=137.99 Aligned_cols=83 Identities=25% Similarity=0.340 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 172 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 172 p~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
+.++++|||+|||.++|+++|+++|++||.|+.|+++.++.+ ++++|||||+|.+.++|++|++.|||..|.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--- 85 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS---RRSRGFAFVYFENVDDAKEAKERANGMELDGR--- 85 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSS---SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE---
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCC---CCcccEEEEEECCHHHHHHHHHHhCCCEECCE---
Confidence 335799999999999999999999999999999999988765 88999999999999999999999999999998
Q ss_pred CccEEEEeccC
Q 023903 252 SKFLRLQFSRN 262 (275)
Q Consensus 252 ~~~LrV~~Ar~ 262 (275)
.|+|+|++.
T Consensus 86 --~l~v~~a~~ 94 (95)
T 2cqc_A 86 --RIRVSGPSS 94 (95)
T ss_dssp --EEEEECCSC
T ss_pred --EEEEEecCC
Confidence 799999874
No 29
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=3.2e-19 Score=138.17 Aligned_cols=84 Identities=23% Similarity=0.337 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC---CCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE---DDP 250 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g---~~~ 250 (275)
++++|||+|||.++|+++|+++|++||.|++|+|+.++. ++++|||||+|.+.++|++|++.|||..+.+ +
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~-- 87 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD----GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS-- 87 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS----SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc--
Confidence 469999999999999999999999999999999998863 8999999999999999999999999999988 5
Q ss_pred CCccEEEEeccCCCCC
Q 023903 251 DSKFLRLQFSRNPGPR 266 (275)
Q Consensus 251 ~~~~LrV~~Ar~~~~r 266 (275)
.|+|+|++.+..+
T Consensus 88 ---~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 ---SLVVKFADTDKES 100 (105)
T ss_dssp ---CCEEEESCSSCCC
T ss_pred ---cEEEEECccCccc
Confidence 6999999886544
No 30
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3e-19 Score=138.07 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|+.|+|+.++ ..++|||||+|.+.++|++|++.||+..|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 83 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-----RGSKGFGFVTFENSADADRAREKLHGTVVEGR----- 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT-----TTTCCEEEEEESCHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-----CCCcEEEEEEECCHHHHHHHHHHhCCCEECCE-----
Confidence 46999999999999999999999999999999999875 34789999999999999999999999999998
Q ss_pred cEEEEeccCCCCCC
Q 023903 254 FLRLQFSRNPGPRS 267 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ 267 (275)
.|+|+|++.+..+.
T Consensus 84 ~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 84 KIEVNNATARVMTN 97 (103)
T ss_dssp ECEEEECCSSCCCC
T ss_pred EEEEEEcccCCCCC
Confidence 79999998875443
No 31
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=137.82 Aligned_cols=83 Identities=28% Similarity=0.524 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|++|+++.++ + |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 86 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-A---GKPKGLAYVEYENESQASQAVMKMDGMTIKEN----- 86 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-T---SCEEEEEEEEESSHHHHHHHHHHHTTEESSSC-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-C---CCEEeEEEEEECCHHHHHHHHHHhCCCEECCE-----
Confidence 46899999999999999999999999999999999887 3 89999999999999999999999999999998
Q ss_pred cEEEEeccCCCC
Q 023903 254 FLRLQFSRNPGP 265 (275)
Q Consensus 254 ~LrV~~Ar~~~~ 265 (275)
.|+|+|++.+..
T Consensus 87 ~l~v~~a~~~~~ 98 (100)
T 2do4_A 87 IIKVAISNSGPS 98 (100)
T ss_dssp EEEEEECCCCSC
T ss_pred EEEEEECCCCCC
Confidence 799999987654
No 32
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=138.97 Aligned_cols=90 Identities=27% Similarity=0.405 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
.++++|||+|||.++|+++|+++|+.|+ .|+++.++.+ ++++|||||+|.+.++|++|++.||+..|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 82 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRET---GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN---- 82 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSS---CSEEEEEEEECSSHHHHHHHHHHHTTCEETTE----
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCC---CCcCcEEEEEECCHHHHHHHHHHhCCCeECCe----
Confidence 3579999999999999999999999884 5677777654 88999999999999999999999999999998
Q ss_pred ccEEEEeccCCCCCCCCCCCC
Q 023903 253 KFLRLQFSRNPGPRSVFGARG 273 (275)
Q Consensus 253 ~~LrV~~Ar~~~~r~ggg~~G 273 (275)
.|+|+|++.+..+++++++|
T Consensus 83 -~l~V~~a~~~~~~~~~~~~G 102 (102)
T 2fc8_A 83 -KVTLDWAKPKGEGGSGPSSG 102 (102)
T ss_dssp -ECEEEECCCCCSSSCSCCCC
T ss_pred -EEEEEEecCCCCCCCCCCCC
Confidence 79999999876655554443
No 33
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.6e-19 Score=136.55 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++++++|+++|++||.|+.|+++.+. ++++|||||+|.+.++|++|++.||+..|.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-----g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~----- 76 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-----GKSKGCGVVKFESPEVAERACRMMNGMKLSGR----- 76 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESS-----SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB-----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccC-----CCcceEEEEEECCHHHHHHHHHHhCCCEECCc-----
Confidence 46999999999999999999999999999999998742 88999999999999999999999999999998
Q ss_pred cEEEEeccCCCCC
Q 023903 254 FLRLQFSRNPGPR 266 (275)
Q Consensus 254 ~LrV~~Ar~~~~r 266 (275)
.|+|+|++.+...
T Consensus 77 ~l~v~~a~~~~~~ 89 (92)
T 2dgv_A 77 EIDVRIDRNASGP 89 (92)
T ss_dssp CCCCEECSCCSSC
T ss_pred EEEEEEcCCCCCC
Confidence 6999999886543
No 34
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=137.10 Aligned_cols=80 Identities=18% Similarity=0.281 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++++++|+++|++||.|.+|+++.++.+ ++++|||||+|.+.++|++|++.||+..|.++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 86 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDT---RKSKGVAFILFLDKDSAQNCTRAINNKQLFGR----- 86 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSS---CCCTTCEEEEESCHHHHHHHHHHTTTEEETTE-----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CCcccEEEEEECCHHHHHHHHHHcCCCeeCCc-----
Confidence 4689999999999999999999999999999999988764 88999999999999999999999999999998
Q ss_pred cEEEEecc
Q 023903 254 FLRLQFSR 261 (275)
Q Consensus 254 ~LrV~~Ar 261 (275)
.|+|+|||
T Consensus 87 ~l~v~~ak 94 (94)
T 2e5h_A 87 VIKASIAI 94 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 79999986
No 35
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=9.6e-20 Score=144.64 Aligned_cols=81 Identities=16% Similarity=0.280 Sum_probs=75.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
+.+|||+|||+++||++|+++|++||.|++|+|+.++ +.+||||||+|.+.++|++|++.|||..|.++ .
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-----~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~-----~ 74 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR-----K 74 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESCHHHHHHHHHHHTTCEETTE-----E
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-----CCCCceEEEEECCHHHHHHHHHHcCCCEECCE-----E
Confidence 5789999999999999999999999999999999876 55789999999999999999999999999998 7
Q ss_pred EEEEeccCCCC
Q 023903 255 LRLQFSRNPGP 265 (275)
Q Consensus 255 LrV~~Ar~~~~ 265 (275)
|+|++++....
T Consensus 75 i~V~~a~~~~~ 85 (115)
T 4f25_A 75 VFVGRFKSRKE 85 (115)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEECCCccc
Confidence 99999987543
No 36
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=9e-20 Score=135.72 Aligned_cols=80 Identities=20% Similarity=0.367 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++++++|+++|++||.|..++++.++.+ ++++|||||+|.+.++|++|++.|||..+.++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 77 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET---EKHRGFAFVEFELAEDAAAAIDNMNESELFGR----- 77 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTT---TEECSEEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCC---CccccEEEEEECCHHHHHHHHHHhCCCEECCc-----
Confidence 4799999999999999999999999999999999887654 88999999999999999999999999999998
Q ss_pred cEEEEecc
Q 023903 254 FLRLQFSR 261 (275)
Q Consensus 254 ~LrV~~Ar 261 (275)
.|+|+|||
T Consensus 78 ~l~v~~ak 85 (85)
T 3mdf_A 78 TIRVNLAK 85 (85)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 79999986
No 37
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=144.03 Aligned_cols=83 Identities=22% Similarity=0.425 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
++.++|||+|||.++|+++|+++|++||.|+.|+|+.++ + |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~---g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~---- 76 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-T---SKSRGFAFITFENPADAKNAAKDMNGKSLHGK---- 76 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-T---TTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-C---CCcccEEEEEECCHHHHHHHHHHhCCCEECCE----
Confidence 356899999999999999999999999999999999887 3 89999999999999999999999999999998
Q ss_pred ccEEEEeccCCC
Q 023903 253 KFLRLQFSRNPG 264 (275)
Q Consensus 253 ~~LrV~~Ar~~~ 264 (275)
.|+|+|++.+.
T Consensus 77 -~l~V~~a~~~~ 87 (116)
T 2fy1_A 77 -AIKVEQAKKPS 87 (116)
T ss_dssp -BCEEEECCCSS
T ss_pred -EEEEEECCCCC
Confidence 79999998763
No 38
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=3.5e-19 Score=140.29 Aligned_cols=84 Identities=21% Similarity=0.333 Sum_probs=78.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|+.|+|+.++.+ ++++|||||+|.+.++|++|++.|||..|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 85 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMAT---GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR----- 85 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHTTTCEETTE-----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECCE-----
Confidence 5799999999999999999999999999999999988654 88999999999999999999999999999998
Q ss_pred cEEEEeccCCCC
Q 023903 254 FLRLQFSRNPGP 265 (275)
Q Consensus 254 ~LrV~~Ar~~~~ 265 (275)
.|+|+|++....
T Consensus 86 ~l~V~~a~~~~~ 97 (115)
T 2dgo_A 86 QIRTNWATRKPP 97 (115)
T ss_dssp ECEEEESSCCCC
T ss_pred EEEEEEccCCCC
Confidence 799999987643
No 39
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=2.6e-19 Score=141.66 Aligned_cols=81 Identities=25% Similarity=0.493 Sum_probs=75.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
.+.++|||+|||.++|+++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 110 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQT---SLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK---- 110 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSS---SCCCCEEEEEEESSHHHHHHHHHCCCCEETTE----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC---CCcCcEEEEEECCHHHHHHHHHHcCCCEECCE----
Confidence 35789999999999999999999999999999999988654 88999999999999999999999999999998
Q ss_pred ccEEEEecc
Q 023903 253 KFLRLQFSR 261 (275)
Q Consensus 253 ~~LrV~~Ar 261 (275)
.|+|+|+|
T Consensus 111 -~l~V~~ak 118 (118)
T 2khc_A 111 -RLKVQLKK 118 (118)
T ss_dssp -ECCEEEC-
T ss_pred -EEEEEecC
Confidence 79999986
No 40
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=139.77 Aligned_cols=84 Identities=19% Similarity=0.331 Sum_probs=78.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|..|+++.++.+ |+++|||||+|.+.++|++|++.|||..|.|+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 93 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRT---GYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ----- 93 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---SSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC---CceeeEEEEEECCHHHHHHHHHHhcCCEECCc-----
Confidence 4689999999999999999999999999999999988765 88999999999999999999999999999998
Q ss_pred cEEEEeccCCCC
Q 023903 254 FLRLQFSRNPGP 265 (275)
Q Consensus 254 ~LrV~~Ar~~~~ 265 (275)
.|+|+|++...+
T Consensus 94 ~l~V~~a~~~~~ 105 (106)
T 1p27_B 94 PISVDWCFVRGP 105 (106)
T ss_dssp BCEEEESEESSC
T ss_pred EEEEEeecCCCC
Confidence 799999987543
No 41
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6.8e-19 Score=138.21 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|++|+|+.++. ++++|||||+|.+.++|++|++.||++.|.++
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 84 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD----GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR----- 84 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----CSEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC-----
Confidence 468999999999999999999999999999999998863 88999999999999999999999999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|+|++..
T Consensus 85 ~l~v~~a~~~ 94 (114)
T 2do0_A 85 PMHVKMDERA 94 (114)
T ss_dssp ECEEEECSCC
T ss_pred EEEEEEcccC
Confidence 7999999764
No 42
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-20 Score=143.98 Aligned_cols=80 Identities=15% Similarity=0.349 Sum_probs=73.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCC--EEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCC----eeCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVG--YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY----RMDED 248 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~--i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~----~~~g~ 248 (275)
-+||||+|||+++|+++|+++|++||. +.+|++++++.+ |++||||||+|.+.++|++|++.|||. .++|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~t---g~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQT---QQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSS---SSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCC---CCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 589999999999999999999999995 668999988765 899999999999999999999999997 48888
Q ss_pred CCCCccEEEEeccC
Q 023903 249 DPDSKFLRLQFSRN 262 (275)
Q Consensus 249 ~~~~~~LrV~~Ar~ 262 (275)
+|+|+||+.
T Consensus 86 -----~i~V~~Aks 94 (95)
T 2lkz_A 86 -----TIGVDFAKS 94 (95)
T ss_dssp -----EEEEEECCC
T ss_pred -----EEEEEEccC
Confidence 799999985
No 43
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=1.8e-19 Score=137.84 Aligned_cols=83 Identities=20% Similarity=0.459 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++.|||..+.++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----- 72 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQT---GRSKGYAFIEFRDLESSASAVRNLNGYQLGSR----- 72 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTT---CCBCSEEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC---CccceEEEEEECCHHHHHHHHHHhCCCeECCe-----
Confidence 3689999999999999999999999999999999988654 88999999999999999999999999999998
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
.|+|+|++.+.
T Consensus 73 ~l~V~~a~~~~ 83 (96)
T 2x1f_A 73 FLKCGYSSNSD 83 (96)
T ss_dssp ECEEEECSCSS
T ss_pred EEEEEEcCCCC
Confidence 79999998754
No 44
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=2.9e-19 Score=132.38 Aligned_cols=81 Identities=20% Similarity=0.348 Sum_probs=75.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
+.+|||+|||.++++++|+++|++||.|.+++++.+..+ ++++|||||+|.+.++|++|++.|||..+.++ .
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-----~ 72 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT---GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR-----P 72 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTT---CCEEEEEEEEESCHHHHHHHHHHHTTCEETTE-----E
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCC---CCccceEEEEECCHHHHHHHHHHhcCCeeCCc-----E
Confidence 368999999999999999999999999999999988654 88999999999999999999999999999998 7
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|+|+|++.+
T Consensus 73 l~v~~a~~~ 81 (83)
T 3md1_A 73 LRINWAAKL 81 (83)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCcC
Confidence 999999864
No 45
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=141.56 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCCHHHHH---HHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVA---HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~---~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
..++|||+|||+++++++|+ ++|++||.|.+|+|+.++.+...++++|||||+|.+.++|++|++.|||..|+++
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr-- 91 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR-- 91 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE--
Confidence 46899999999999999999 9999999999999988765422346779999999999999999999999999998
Q ss_pred CCccEEEEeccCCC
Q 023903 251 DSKFLRLQFSRNPG 264 (275)
Q Consensus 251 ~~~~LrV~~Ar~~~ 264 (275)
.|+|+||+...
T Consensus 92 ---~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 ---TLKASLGTTKY 102 (111)
T ss_dssp ---EEEEESCCCCS
T ss_pred ---EEEEEeccccc
Confidence 79999998764
No 46
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-20 Score=143.27 Aligned_cols=82 Identities=21% Similarity=0.281 Sum_probs=74.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCC-CEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhC-CCeeCCCCCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ-GYRMDEDDPDS 252 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG-~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~Ln-G~~~~g~~~~~ 252 (275)
+++|||+|||.++||++|+++|++|| .|++|+|+.++.+ |+++|||||+|.+.++|++|++.++ +..+.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t---~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr---- 73 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSS---GQSRGFAFVEFSHLQDATRWMEANQHSLNILGQ---- 73 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSS---CCCSSEEEEECSSHHHHHHHHHTTTTEEEETTE----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCC---CCcCceEEEEecCHHHHHHHHHhcCCCeEECCE----
Confidence 58999999999999999999999999 7999999988765 8999999999999999999999874 5678888
Q ss_pred ccEEEEeccCCC
Q 023903 253 KFLRLQFSRNPG 264 (275)
Q Consensus 253 ~~LrV~~Ar~~~ 264 (275)
+|+|+||+.+.
T Consensus 74 -~i~V~~a~~~~ 84 (91)
T 2lxi_A 74 -KVSMHYSDPKP 84 (91)
T ss_dssp -EEEEECCCSCC
T ss_pred -EEEEEEcCCCC
Confidence 79999998653
No 47
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=3.5e-19 Score=147.83 Aligned_cols=84 Identities=24% Similarity=0.389 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
.++++|||+|||.++|+++|+++|++||.|+.|+|+.++.+ ++++|||||+|.+.++|++|++.||+..|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---- 109 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMK---KTACGFCFVEYYSRADAENAMRYINGTRLDDR---- 109 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHTTTSEETTE----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHhCCCEECCe----
Confidence 35799999999999999999999999999999999988765 88999999999999999999999999999998
Q ss_pred ccEEEEeccCCC
Q 023903 253 KFLRLQFSRNPG 264 (275)
Q Consensus 253 ~~LrV~~Ar~~~ 264 (275)
.|+|+|++...
T Consensus 110 -~l~V~~a~~~~ 120 (156)
T 1h2v_Z 110 -IIRTDWDAGFK 120 (156)
T ss_dssp -ECEEEEESCCC
T ss_pred -EEEEEECCCCC
Confidence 79999998753
No 48
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=2.7e-19 Score=145.47 Aligned_cols=85 Identities=27% Similarity=0.373 Sum_probs=78.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
.++++|||+|||.++|+++|+++|++||.|+.|+|+.++.+ ++++|||||+|.+.++|++|++.|||..|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~---- 116 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS---RRSRGFAFVYFENVDDAKEAKERANGMELDGR---- 116 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSS---SCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHhCCCEECCE----
Confidence 35789999999999999999999999999999999988765 88999999999999999999999999999998
Q ss_pred ccEEEEeccCCCC
Q 023903 253 KFLRLQFSRNPGP 265 (275)
Q Consensus 253 ~~LrV~~Ar~~~~ 265 (275)
.|+|+|++.+.+
T Consensus 117 -~l~V~~a~~~~p 128 (129)
T 2kxn_B 117 -RIRVDFSITKRP 128 (129)
T ss_dssp -CCEESCCSSSSC
T ss_pred -EEEEEEecCCCC
Confidence 699999987654
No 49
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=134.26 Aligned_cols=85 Identities=22% Similarity=0.331 Sum_probs=77.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||+|||.++|+++|+++|++||.|.+++++.++.+ +++++|||||+|.+.++|++|++.|||..+.|+ .
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-----~ 76 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMH--PHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ-----E 76 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTE--EEEECSEEEEEESSHHHHHHHHHHHTTCEETTE-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCC--CCCCCcEEEEEEecHHHHHHHHHHcCCCeECCe-----E
Confidence 589999999999999999999999999999999987754 133889999999999999999999999999998 7
Q ss_pred EEEEeccCCCCC
Q 023903 255 LRLQFSRNPGPR 266 (275)
Q Consensus 255 LrV~~Ar~~~~r 266 (275)
|+|++++.+.+|
T Consensus 77 l~v~~a~~~~~R 88 (88)
T 4a8x_A 77 ITATAVLAPWPR 88 (88)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999887654
No 50
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=138.58 Aligned_cols=86 Identities=17% Similarity=0.315 Sum_probs=78.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||+++|+++|+++|++||.|++|+|+.++.+ ++++|||||+|.+.++|++|++. |+..|.++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~----- 85 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTT---NQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR----- 85 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSS---CCEEEEEEEEESSTTHHHHHHHH-CSEEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC---CCcceEEEEEECCHHHHHHHHHh-CCCeECCE-----
Confidence 4699999999999999999999999999999999988654 89999999999999999999998 99999998
Q ss_pred cEEEEeccCCCCCCC
Q 023903 254 FLRLQFSRNPGPRSV 268 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~g 268 (275)
.|+|+|++.+..+..
T Consensus 86 ~l~V~~a~~~~~~~~ 100 (105)
T 2dh8_A 86 NIDPKPCTPRGMQPS 100 (105)
T ss_dssp EEBCCCSCCSSCCTT
T ss_pred EEEEEEccCCCCCCC
Confidence 799999988754443
No 51
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=137.02 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcC-CCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCe-eCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRP-FVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR-MDEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~-fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~-~~g~~~~ 251 (275)
++++|||+|||.++|+++|+++|++ ||.|.+|+|+.++ + |+++|||||+|.+.++|++|++.||+.. |.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~--- 80 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-T---GVSKGYGFVKFTDELEQKRALTECQGAVGLGSK--- 80 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-T---CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-C---CCccceEEEEECCHHHHHHHHHHccCCcccCCE---
Confidence 5689999999999999999999999 9999999999887 4 8999999999999999999999999999 9988
Q ss_pred CccEEEEeccCCC
Q 023903 252 SKFLRLQFSRNPG 264 (275)
Q Consensus 252 ~~~LrV~~Ar~~~ 264 (275)
.|+|+|++...
T Consensus 81 --~l~v~~a~~~~ 91 (104)
T 2dhg_A 81 --PVRLSVAIPKA 91 (104)
T ss_dssp --CCCCCBCCCCC
T ss_pred --eEEEEEccCCC
Confidence 69999997753
No 52
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=135.54 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++++++|+++|++||.|++|+|+.++. ++++|||||+|.+.++|++|++.||+..|.++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 85 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE----GKPKSFGFVCFKHPESVSYAIALLNGIRLYGR----- 85 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSTHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCCceEEEEEECCHHHHHHHHHHhCCCEECCC-----
Confidence 468999999999999999999999999999999998764 88999999999999999999999999999998
Q ss_pred cEEEEeccC
Q 023903 254 FLRLQFSRN 262 (275)
Q Consensus 254 ~LrV~~Ar~ 262 (275)
.|+|+|++.
T Consensus 86 ~l~V~~a~~ 94 (95)
T 2ywk_A 86 PINVSGPSS 94 (95)
T ss_dssp ECEEECCCC
T ss_pred EEEEEEcCC
Confidence 799999875
No 53
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=8.5e-20 Score=138.44 Aligned_cols=82 Identities=12% Similarity=0.143 Sum_probs=71.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCC--CEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG--~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.+|||+|||+++|+++|+++|++|| .|.+++++.++.+ |+++|||||+|.+.++|++|++.|||..+.|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~---g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr----- 73 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN---GQSKGFALVGVGSEASSKKLMDLLPKRELHGQ----- 73 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTT---CCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC-----
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCC---CccCcEEEEEECCHHHHHHHHHHcCCCeeCCE-----
Confidence 5799999999999999999999999 9999999988765 89999999999999999999999999999998
Q ss_pred cEEEEeccCCCC
Q 023903 254 FLRLQFSRNPGP 265 (275)
Q Consensus 254 ~LrV~~Ar~~~~ 265 (275)
.|+|++++.+..
T Consensus 74 ~i~V~~~~~~~~ 85 (90)
T 3p5t_L 74 NPVVTPSNKLEH 85 (90)
T ss_dssp CCEECCC-----
T ss_pred EEEEEECCCCcc
Confidence 699999987643
No 54
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=2.9e-19 Score=139.70 Aligned_cols=84 Identities=19% Similarity=0.313 Sum_probs=77.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|..|+++.++.+ |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----- 96 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRT---GFSKGYALVEYETHKQALAAKEALNGAEIMGQ----- 96 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTT---SSBCSEEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHcCCCEECCc-----
Confidence 4689999999999999999999999999999999887654 88999999999999999999999999999998
Q ss_pred cEEEEeccCCCC
Q 023903 254 FLRLQFSRNPGP 265 (275)
Q Consensus 254 ~LrV~~Ar~~~~ 265 (275)
.|+|+|++....
T Consensus 97 ~l~V~~a~~~~~ 108 (110)
T 1oo0_B 97 TIQVDWCFVKGP 108 (110)
T ss_dssp ECEEEESEESSC
T ss_pred EEEEEEcccCCC
Confidence 799999987654
No 55
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=132.05 Aligned_cols=82 Identities=21% Similarity=0.375 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|++|+++ + |||||+|.+.++|++|++.||+..+.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~---------g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 70 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--K---------NYGFVHIEDKTAAEDAIRNLHHYKLHGV----- 70 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--T---------TEEEEEESSHHHHHHHHHHHTTCBCSSC-----
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--C---------CEEEEEECCHHHHHHHHHHhcCCccCCc-----
Confidence 47999999999999999999999999999999987 1 5999999999999999999999999998
Q ss_pred cEEEEeccCCCCCCCCCC
Q 023903 254 FLRLQFSRNPGPRSVFGA 271 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ggg~ 271 (275)
.|+|+|++.+..+..+++
T Consensus 71 ~l~v~~a~~~~~~~~~~~ 88 (90)
T 2dnq_A 71 NINVEASKNKSKASSGPS 88 (90)
T ss_dssp BCEEECSSCCCCCCSSCC
T ss_pred EEEEEECCCCCCCCCCCC
Confidence 799999998755544333
No 56
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.7e-19 Score=134.72 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.| +++.+. + ++++|||||+|.+.++|++|++.||+..|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~-~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 81 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQ-N---GKSKGYAFIEFASFEDAKEALNSCNKREIEGR----- 81 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCS-S---SCBCSEEEEECSSHHHHHHHHHHTSSEEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECC-C---CCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe-----
Confidence 47999999999999999999999999976 455553 2 88999999999999999999999999999998
Q ss_pred cEEEEeccCCCCCC
Q 023903 254 FLRLQFSRNPGPRS 267 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ 267 (275)
.|+|+|++.+....
T Consensus 82 ~l~v~~a~~~~~~~ 95 (101)
T 2fc9_A 82 AIRLELQGPRGSPN 95 (101)
T ss_dssp EEEEEECSSCCCCC
T ss_pred EEEEEEcCCCCCCC
Confidence 79999998875443
No 57
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=8.6e-19 Score=137.96 Aligned_cols=82 Identities=23% Similarity=0.447 Sum_probs=76.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|..|+++.++.+ |+++|||||+|.+.++|++|++.|||..|.|+
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~----- 96 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSET---GRSKGYGFITFSDSECAKKALEQLNGFELAGR----- 96 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTT---TEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECCE-----
Confidence 5689999999999999999999999999999999988654 88999999999999999999999999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|+|++.+
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 6999999864
No 58
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=8.5e-19 Score=136.20 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||+++|+++|+++|++||.|++|+|+.++ + |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 98 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-S---GRSLGTADVHFERKADALKAMKQYNGVPLDGR----- 98 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-T---SCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-C---CCcceEEEEEECCHHHHHHHHHHhCCCEeCCc-----
Confidence 46899999999999999999999999999999999887 3 89999999999999999999999999999998
Q ss_pred cEEEEecc
Q 023903 254 FLRLQFSR 261 (275)
Q Consensus 254 ~LrV~~Ar 261 (275)
.|+|+|++
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 79999986
No 59
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-19 Score=141.05 Aligned_cols=85 Identities=26% Similarity=0.459 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHcCCCCE----EEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 023903 172 PDASSTLYVEGLPADSTKREVAHIFRPFVGY----KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 247 (275)
Q Consensus 172 p~~~~tLfVgNLP~~vteeeL~~lFs~fG~i----~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g 247 (275)
..++++|||+|||.++|+++|+++|++||.| ..+++. + ++++|||||+|.+.++|++|++.|||..|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~---g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----T---GRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----C---SSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----C---CccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3457999999999999999999999999998 455544 2 7888999999999999999999999999998
Q ss_pred CCCCCccEEEEeccCCCCCCC
Q 023903 248 DDPDSKFLRLQFSRNPGPRSV 268 (275)
Q Consensus 248 ~~~~~~~LrV~~Ar~~~~r~g 268 (275)
+ .|+|+|++.+..+..
T Consensus 95 ~-----~l~v~~a~~~~~~~~ 110 (115)
T 2cpx_A 95 K-----ILVIEFGKNKKQRSS 110 (115)
T ss_dssp C-----BCEEEECCCCSCCCC
T ss_pred c-----EEEEEEccCCCCCCC
Confidence 8 799999998754443
No 60
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.9e-19 Score=139.54 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 023903 174 ASSTLYVEGLPA------DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 247 (275)
Q Consensus 174 ~~~tLfVgNLP~------~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g 247 (275)
.+++|||+|||. ++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||+.|.+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~t---g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEAT---GKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTT---TEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 358999999999 9999999999999999999999988765 8999999999999999999999999999999
Q ss_pred -CCCCCccEEEEeccC
Q 023903 248 -DDPDSKFLRLQFSRN 262 (275)
Q Consensus 248 -~~~~~~~LrV~~Ar~ 262 (275)
+ .|+|++++.
T Consensus 82 ~r-----~l~V~~a~~ 92 (100)
T 3ns6_A 82 KH-----RLFLYTMKD 92 (100)
T ss_dssp SC-----BCEEEESHH
T ss_pred Ce-----EEEEEECch
Confidence 6 799999864
No 61
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-19 Score=135.34 Aligned_cols=80 Identities=21% Similarity=0.414 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++++++|+++|++||.|..++++.++.+ ++++|||||+|.+.++|++|++.|||..+.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 75 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTT---NKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ----- 75 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSS---CSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE-----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE-----
Confidence 5799999999999999999999999999999999988654 88999999999999999999999999999988
Q ss_pred cEEEEecc
Q 023903 254 FLRLQFSR 261 (275)
Q Consensus 254 ~LrV~~Ar 261 (275)
.|++++++
T Consensus 76 ~~~~~~~~ 83 (85)
T 1x4e_A 76 MAKQSGPS 83 (85)
T ss_dssp SCCSSCCC
T ss_pred EEeecCCC
Confidence 57877754
No 62
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.7e-19 Score=137.52 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||+++||++|+++|++||. ++|+|+.++ + |+++|||||+|.+.++|++|+ .+|+..|.++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~---g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr----- 82 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-D---GRVTGEADVEFATHEDAVAAM-AKDKANMQHR----- 82 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-S---SCEEEEEEEECSSSHHHHHHH-TTSSCCSSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-C---CCEeeEEEEEECCHHHHHHHH-HhCCCeECCc-----
Confidence 4689999999999999999999999994 599999887 3 899999999999999999999 4799999998
Q ss_pred cEEEEeccCCCCC
Q 023903 254 FLRLQFSRNPGPR 266 (275)
Q Consensus 254 ~LrV~~Ar~~~~r 266 (275)
.|+|.++..+...
T Consensus 83 ~i~V~~~~~~~~~ 95 (102)
T 1wez_A 83 YVELFLNSTAGTS 95 (102)
T ss_dssp CCEEEEECCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 6999998876533
No 63
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.5e-19 Score=136.33 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||+++++++|+++|++||.|..++++.++.+ |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~----- 85 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEK---GMPTGEAMVAFESRDEATAAVIDLNDRPIGSR----- 85 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSS---SCEEEEEEEEESCHHHHHHHHHHTTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCC---CCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe-----
Confidence 3589999999999999999999999999988888777654 88999999999999999999999999999998
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
.|+|+|++.+.
T Consensus 86 ~l~V~~a~~~~ 96 (98)
T 2cqp_A 86 KVKLVLGSGPS 96 (98)
T ss_dssp ECEEEESSCSS
T ss_pred EEEEEEcCCCC
Confidence 79999998653
No 64
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.2e-19 Score=139.24 Aligned_cols=88 Identities=13% Similarity=0.163 Sum_probs=79.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|+.|+|+.++.+ ++++|||||+|.+.++|++|++. ++..|.++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~----- 96 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPAS---KRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR----- 96 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTT---SSCCSEEEEECSSHHHHHHHHTS-CSEEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCC---CCcCceEEEEeCCHHHHHHHHHh-CCcEECCE-----
Confidence 4689999999999999999999999999999999988665 88999999999999999999988 99999998
Q ss_pred cEEEEeccCCCCCCCCC
Q 023903 254 FLRLQFSRNPGPRSVFG 270 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ggg 270 (275)
.|+|+|++....+..++
T Consensus 97 ~l~V~~a~~~~~~~~~~ 113 (116)
T 1x4b_A 97 VVEPKRAVAREESGSGP 113 (116)
T ss_dssp EEEEECCSSCCCCCCSC
T ss_pred EEEEEECCCCccCCCCC
Confidence 79999998875544433
No 65
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8e-19 Score=134.73 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 249 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~----~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~ 249 (275)
..++|||+|||+++++++|+ ++|++||.|++|+|+.++. + +|||||+|.+.++|++|++.|||..|.++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~----~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr- 80 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD----Y--QLKAVVQMENLQDAIGAVNSLHRYKIGSK- 80 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS----T--TCCEEEEESSHHHHHHHHHHHTTEEETTE-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC----C--CeEEEEEECCHHHHHHHHHHhCCCEECCe-
Confidence 46899999999999999999 9999999999999998764 2 68999999999999999999999999998
Q ss_pred CCCccEEEEeccCCCCC
Q 023903 250 PDSKFLRLQFSRNPGPR 266 (275)
Q Consensus 250 ~~~~~LrV~~Ar~~~~r 266 (275)
.|+|+||+....+
T Consensus 81 ----~l~V~~a~~~~~~ 93 (96)
T 2dgx_A 81 ----KILVSLATGASGP 93 (96)
T ss_dssp ----EEEEEECCCSSCC
T ss_pred ----EEEEEEcCCCCCC
Confidence 7999999876443
No 66
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-18 Score=132.62 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||+++++++|+++|++||.|+.|+|+.++.+ ++++|||||+|.+.++|++|++ ++..|.++
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~----- 83 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKT---GHSKGFGFVRFTEYETQVKVMS--QRHMIDGR----- 83 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSS---CSEEEEEEEEESSHHHHHHHHH--SCEEETTE-----
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCC---CCccceEEEEECCHHHHHHHHH--cCCeeCCe-----
Confidence 4689999999999999999999999999999999988765 8999999999999999999998 57889888
Q ss_pred cEEEEeccCCCCC
Q 023903 254 FLRLQFSRNPGPR 266 (275)
Q Consensus 254 ~LrV~~Ar~~~~r 266 (275)
.|+|+|++.....
T Consensus 84 ~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 84 WCDCKLPNSKQSQ 96 (103)
T ss_dssp EEEEECCCTTCCC
T ss_pred EEEEEecCCCCcC
Confidence 7999999886433
No 67
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-19 Score=141.54 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||.++++++|+++|++||.|+.|+|+.++.+ ++++|||||+|.+.++|++|+ .||+..|.++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~----- 94 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNS---RRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGV----- 94 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCS---SSCCCCEEEEESCGGGHHHHH-HHTTEEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCC---CccCcEEEEEeCcHHHHHHHH-HcCCCEeCCe-----
Confidence 4689999999999999999999999999999999988765 889999999999999999999 9999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|+|++..
T Consensus 95 ~l~V~~a~~~ 104 (114)
T 2cq4_A 95 PIIVQASQAE 104 (114)
T ss_dssp EEEEEEHHHH
T ss_pred EEEEEecCCC
Confidence 7999999865
No 68
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=9.9e-19 Score=131.12 Aligned_cols=81 Identities=17% Similarity=0.296 Sum_probs=75.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||+|||.++|+++|+++|++||.|.+++++.++.+ ++++|||||+|.+.++|++|+ .|||..+.++ .
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~-----~ 76 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFS---GHPKGFAYIEFSDKESVRTSL-ALDESLFRGR-----Q 76 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSS---SSCCEEEEEEESSTHHHHHHG-GGTTCEETTE-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHH-hcCCCEECCc-----E
Confidence 489999999999999999999999999999999988654 889999999999999999999 9999999998 7
Q ss_pred EEEEeccCCC
Q 023903 255 LRLQFSRNPG 264 (275)
Q Consensus 255 LrV~~Ar~~~ 264 (275)
|+|++++.+.
T Consensus 77 l~V~~a~~~~ 86 (89)
T 3ucg_A 77 IKVIPKRTNR 86 (89)
T ss_dssp CEEEETTTTS
T ss_pred EEEEEccCCC
Confidence 9999998753
No 69
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.2e-18 Score=134.17 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeeCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ--GYRMDEDDP 250 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~Ln--G~~~~g~~~ 250 (275)
.++++|||+|||+++||++|+++|++||.|++|+++.+ ||||||+|++.++|++|++.|+ +..+.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr-- 81 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---------KNQAFLELATEEAAITMVNYYSAVTPHLRNQ-- 81 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHHHSCCEETTE--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---------CCEEEEEECCHHHHHHHHHHhccCCceECCc--
Confidence 35799999999999999999999999999999988754 3799999999999999999874 6789988
Q ss_pred CCccEEEEeccCCCCC
Q 023903 251 DSKFLRLQFSRNPGPR 266 (275)
Q Consensus 251 ~~~~LrV~~Ar~~~~r 266 (275)
+|+|+|++....+
T Consensus 82 ---~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 82 ---PIYIQYSNHKELK 94 (101)
T ss_dssp ---ECEEEECSCSSCC
T ss_pred ---EEEEEEcCcccCc
Confidence 7999999986544
No 70
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=5.6e-19 Score=143.06 Aligned_cols=83 Identities=19% Similarity=0.314 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEE--EEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCC----eeC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKE--VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY----RMD 246 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~--vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~----~~~ 246 (275)
.++++|||+|||+++||++|+++|++||.|.. |+|+.++.+ |++||||||+|.+. +|++|++.|||. .++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~t---g~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQT---QLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSS---SSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCC---CCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 35789999999999999999999999999977 999988765 89999999999999 999999999999 999
Q ss_pred CCCCCCccEEEEeccCCC
Q 023903 247 EDDPDSKFLRLQFSRNPG 264 (275)
Q Consensus 247 g~~~~~~~LrV~~Ar~~~ 264 (275)
|+ .|+|+|++...
T Consensus 97 gr-----~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 GK-----TINVEFAKGSK 109 (131)
T ss_dssp GC-----CCCCEECCCSC
T ss_pred CE-----EEEEEECCCCC
Confidence 98 69999998753
No 71
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=135.95 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|+.|+|+.++.+ ++++|||||+|.+.++|++|++.|++ .|.++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~----- 86 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQT---GKSRGYGFVTMADRAAAERACKDPNP-IIDGR----- 86 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSS---CCCCSEEEEEESSHHHHHHHHTCSSC-EETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHhCCC-cCCCE-----
Confidence 4699999999999999999999999999999999988765 88999999999999999999999998 89888
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|+|++..
T Consensus 87 ~l~V~~a~~~ 96 (116)
T 2cqd_A 87 KANVNLAYLG 96 (116)
T ss_dssp ECEEEESTTT
T ss_pred EEEEEEcccC
Confidence 7999999653
No 72
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=132.86 Aligned_cols=83 Identities=23% Similarity=0.291 Sum_probs=74.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|+.|+++.+ +|||||+|.+.++|++|++.|||..|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---------kg~afV~f~~~~~a~~a~~~l~g~~~~g~----- 79 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---------KGFGFIRLETRTLAEIAKVELDNMPLRGK----- 79 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---------TTEEEEECSSSHHHHHHHHHHTTCCBTTB-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---------CCEEEEEECCHHHHHHHHHHhCCCEeCCc-----
Confidence 4689999999999999999999999999999998754 37999999999999999999999999998
Q ss_pred cEEEEeccCCCCCCCCC
Q 023903 254 FLRLQFSRNPGPRSVFG 270 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ggg 270 (275)
.|+|+|++.+.....+.
T Consensus 80 ~l~v~~a~~~~~~~~g~ 96 (99)
T 2cpj_A 80 QLRVRFACHSASLTSGP 96 (99)
T ss_dssp CCEEEESSCCSCCCCCC
T ss_pred eEEEEEcCCCCCCCCCC
Confidence 69999999875544433
No 73
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.1e-19 Score=137.88 Aligned_cols=77 Identities=10% Similarity=0.140 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCC--eeCCCC
Q 023903 173 DASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY--RMDEDD 249 (275)
Q Consensus 173 ~~~~tLfVgNLP~-~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~--~~~g~~ 249 (275)
+++++|||+|||+ ++||++|+++|++||.|++|+|+.++ |||||+|++.++|++|++.||+. .|.|+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k---------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr- 82 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI---------NEAFIEMATTEDAQAAVDYYTTTPALVFGK- 82 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS---------SCEEEEESSHHHHHHHHHHHHHSCCEETTE-
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC---------CEEEEEECCHHHHHHHHHHHcCCCceECCc-
Confidence 3579999999999 99999999999999999999998653 69999999999999999999875 48888
Q ss_pred CCCccEEEEeccCC
Q 023903 250 PDSKFLRLQFSRNP 263 (275)
Q Consensus 250 ~~~~~LrV~~Ar~~ 263 (275)
+|+|+||+..
T Consensus 83 ----~l~V~~a~~~ 92 (102)
T 1x4d_A 83 ----PVRVHLSQKY 92 (102)
T ss_dssp ----ECEEEEECCC
T ss_pred ----EEEEEECCCC
Confidence 7999999854
No 74
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=1.2e-18 Score=146.41 Aligned_cols=86 Identities=19% Similarity=0.315 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|+.|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----- 142 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRT---GFSKGYALVEYETHKQALAAKEALNGAEIMGQ----- 142 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---SSEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCC---CcEeeEEEEEECCHHHHHHHHHHhCCCEECCE-----
Confidence 4689999999999999999999999999999999988655 89999999999999999999999999999998
Q ss_pred cEEEEeccCCCCCC
Q 023903 254 FLRLQFSRNPGPRS 267 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ 267 (275)
.|+|.|++....+.
T Consensus 143 ~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 143 TIQVDWCFVKGPKR 156 (165)
T ss_dssp ECEEEESEECC---
T ss_pred EEEEEEecCCCCCC
Confidence 79999998765443
No 75
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-18 Score=134.46 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCe--eCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR--MDEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~--~~g~~~~ 251 (275)
++++|||+|||++++|++|+++|++||.|++|+|+.+ ||||||+|++.++|++|++.|++.. |.|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr--- 81 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---------KRQALVEFENIDSAKECVTFAADVPVYIAGQ--- 81 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---------CCEEEEEECCHHHHHHHHHHhccCCceECCE---
Confidence 4699999999999999999999999999999998754 3799999999999999999997654 7887
Q ss_pred CccEEEEeccCCCCC
Q 023903 252 SKFLRLQFSRNPGPR 266 (275)
Q Consensus 252 ~~~LrV~~Ar~~~~r 266 (275)
+|+|+|++....+
T Consensus 82 --~l~V~~a~~~~~~ 94 (104)
T 1wex_A 82 --QAFFNYSTSKRIT 94 (104)
T ss_dssp --BCEEEECSSSSCC
T ss_pred --EEEEEEccCcccc
Confidence 7999999876443
No 76
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.6e-18 Score=138.20 Aligned_cols=83 Identities=14% Similarity=0.283 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||.++|+++|+++|++||.|++|+++.++.+ |+++|||||+|.+.++|++|+ .|||..|.++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~----- 105 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFS---GHPKGYAYIEFAERNSVDAAV-AMDETVFRGR----- 105 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTT---SSCEEEEEEEESSHHHHHHHH-TTTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcccEEEEEECCHHHHHHHH-hcCCCeECCe-----
Confidence 3589999999999999999999999999999999988654 899999999999999999999 8999999998
Q ss_pred cEEEEeccCCCC
Q 023903 254 FLRLQFSRNPGP 265 (275)
Q Consensus 254 ~LrV~~Ar~~~~ 265 (275)
.|+|+|++.+.+
T Consensus 106 ~l~V~~a~~~~~ 117 (124)
T 2jwn_A 106 TIKVLPKRTNMP 117 (124)
T ss_dssp ECEEEESSCCCS
T ss_pred EEEEEECCCCCC
Confidence 799999987543
No 77
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=133.28 Aligned_cols=81 Identities=12% Similarity=0.201 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||+++|+++|+++|++||.|+.|+|+.+ |||||+|.+.++|++|++.|||+.|.++.....
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 4689999999999999999999999999999999854 599999999999999999999999999322222
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
.|+|++++.+.
T Consensus 84 ~i~V~~a~~~~ 94 (108)
T 1x4c_A 84 YIRVKVDGPRS 94 (108)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEeCCCCC
Confidence 79999998763
No 78
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=131.43 Aligned_cols=78 Identities=19% Similarity=0.411 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC--CCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD--EDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~--g~~~~ 251 (275)
++++|||+|||.++|+++|+++|++||.|++|+++.+ +|||||+|.+.++|++|++.||+..|. ++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~--- 83 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---------DSFAYIQYESLDAAQAACAKMRGFPLGGPDR--- 83 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc---
Confidence 4689999999999999999999999999999998754 379999999999999999999999999 66
Q ss_pred CccEEEEeccCCCC
Q 023903 252 SKFLRLQFSRNPGP 265 (275)
Q Consensus 252 ~~~LrV~~Ar~~~~ 265 (275)
.|+|+|++.+..
T Consensus 84 --~l~V~~a~~~~~ 95 (97)
T 1why_A 84 --RLRVDFAKSGPS 95 (97)
T ss_dssp --BCEEEECCCCCC
T ss_pred --EEEEEECCCCCC
Confidence 799999988643
No 79
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=129.49 Aligned_cols=81 Identities=21% Similarity=0.220 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|++|++++ +||||+|.+.++|++|++.||+..|.++
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g~----- 72 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-----------DYAFVHMERAEDAVEAIRGLDNTEFQGK----- 72 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-----------SEEEEEESCHHHHHHHHHHHTTEEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCeeCCc-----
Confidence 468999999999999999999999999999999872 3999999999999999999999999998
Q ss_pred cEEEEeccCCCCCCCCC
Q 023903 254 FLRLQFSRNPGPRSVFG 270 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ggg 270 (275)
.|+|+|++.+.....+.
T Consensus 73 ~l~V~~a~~~~~~~~~~ 89 (92)
T 2dgt_A 73 RMHVQLSTSRLRTASGP 89 (92)
T ss_dssp EEEEEESSCCCSCCCCC
T ss_pred EEEEEEccCCCCCCCCC
Confidence 79999998875444433
No 80
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=6e-19 Score=134.05 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=73.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
+++|||+|||+++|+++|+++|++||.|.+++++.++.+ ++++|||||+|.+.++|++|++.||+..|.++ .
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr-----~ 86 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEK---GMPTGEAMVAFESRDEATAAVIDLNDRPIGSR-----K 86 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTT---SCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCC---CCEeeEEEEEECCHHHHHHHHHHhCCCeECCc-----E
Confidence 589999999999999999999999999998888877654 88999999999999999999999999999998 7
Q ss_pred EEEEeccC
Q 023903 255 LRLQFSRN 262 (275)
Q Consensus 255 LrV~~Ar~ 262 (275)
|+|+++..
T Consensus 87 l~v~~a~s 94 (95)
T 2ek1_A 87 VKLSGPSS 94 (95)
T ss_dssp CEEECCC-
T ss_pred EEEEeccC
Confidence 99999864
No 81
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=136.30 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCe--eCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR--MDEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~--~~g~~~~ 251 (275)
++++|||+|||+++|+++|+++|++||.|++|++++. ||||||+|++.++|.+|++.|++.. +.|+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~---------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr--- 87 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK---------KRQALVEFEDVLGACNAVNYAADNQIYIAGH--- 87 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHHHSCEEETTE---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC---------CCEEEEEECCHHHHHHHHHHhcCCCceeCCc---
Confidence 5799999999999999999999999999999999853 3799999999999999999999986 6687
Q ss_pred CccEEEEeccCC
Q 023903 252 SKFLRLQFSRNP 263 (275)
Q Consensus 252 ~~~LrV~~Ar~~ 263 (275)
+|+|+||+.+
T Consensus 88 --~i~V~~S~~k 97 (100)
T 3r27_A 88 --PAFVNYSTSQ 97 (100)
T ss_dssp --EEEEEECSCS
T ss_pred --EEEEEecccc
Confidence 7999999875
No 82
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=8.8e-18 Score=134.26 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
.++++|||+|||.++++++|+++|++||.|++|+|+.++ + |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---- 104 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-S---GRSLGTADVHFERRADALKAMKQYKGVPLDGR---- 104 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-S---SSCCSEEEEEESSHHHHHHHHHHHTTEESSSC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-C---CCEeeEEEEEECCHHHHHHHHHHcCCCEECCc----
Confidence 457899999999999999999999999999999999887 3 88999999999999999999999999999998
Q ss_pred ccEEEEeccCCC
Q 023903 253 KFLRLQFSRNPG 264 (275)
Q Consensus 253 ~~LrV~~Ar~~~ 264 (275)
.|+|+||....
T Consensus 105 -~l~V~~a~~~~ 115 (124)
T 2kt5_A 105 -PMDIQLVASQI 115 (124)
T ss_dssp -EEEEEEECCTT
T ss_pred -EEEEEEeCCCC
Confidence 79999998753
No 83
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=136.92 Aligned_cols=80 Identities=21% Similarity=0.296 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||.++|+++|+++|++||.|++|+++.++ +.++|||||+|.+.++|++|++.|||..|.|+
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-----~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~----- 97 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-----RGSKGFGFVTFENSADADRAREKLHGTVVEGR----- 97 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT-----TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC-----CCCceEEEEEECCHHHHHHHHHHcCCCEECCE-----
Confidence 57899999999999999999999999999999999875 45889999999999999999999999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|+|++.+
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 7999999864
No 84
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=3.2e-18 Score=128.15 Aligned_cols=78 Identities=18% Similarity=0.350 Sum_probs=72.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++ +++..+.|+
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~----- 80 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT---GRSRGFGFILFKDAASVEKVLD-QKEHRLDGR----- 80 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTT---CCEEEEEEEEESSTHHHHHHHH-SSCEEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCC---CccccEEEEEECCHHHHHHHHH-hCCCEECCE-----
Confidence 4689999999999999999999999999999999988765 8999999999999999999995 588899998
Q ss_pred cEEEEec
Q 023903 254 FLRLQFS 260 (275)
Q Consensus 254 ~LrV~~A 260 (275)
.|+|++|
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 7999886
No 85
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=3e-18 Score=134.92 Aligned_cols=82 Identities=22% Similarity=0.414 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 171 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 171 pp~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
|+.++++|||+|||.++|+++|+++|++||.|..|+++.+ ++++|||||+|.+.++|++|++.|||..+.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-- 75 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT------PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR-- 75 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS------TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe--
Confidence 4556899999999999999999999999999999999864 45679999999999999999999999999998
Q ss_pred CCccEEEEeccCC
Q 023903 251 DSKFLRLQFSRNP 263 (275)
Q Consensus 251 ~~~~LrV~~Ar~~ 263 (275)
.|+|+|++.+
T Consensus 76 ---~l~v~~a~~~ 85 (115)
T 3lqv_A 76 ---YLVVLYYNAN 85 (115)
T ss_dssp ---BCEEEECCHH
T ss_pred ---EEEEEEecCC
Confidence 7999999753
No 86
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=138.17 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG--YRMDEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG--~~~~g~~~~ 251 (275)
++++|||+|||+++||++|+++|++||.|++|+|+.+ ||||||+|++.++|++|++.|++ ..|.|+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr--- 82 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ--- 82 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHTTSCCEETTE---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---------CCEEEEEECCHHHHHHHHHHhccCCceECCE---
Confidence 4799999999999999999999999999999999865 37999999999999999999874 789988
Q ss_pred CccEEEEeccCCCCC
Q 023903 252 SKFLRLQFSRNPGPR 266 (275)
Q Consensus 252 ~~~LrV~~Ar~~~~r 266 (275)
+|+|+||+.....
T Consensus 83 --~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 83 --PIYIQFSNHKELK 95 (105)
T ss_dssp --ECCBCCCSSSSCC
T ss_pred --EEEEEEcCCCCCC
Confidence 7999999876433
No 87
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=133.99 Aligned_cols=83 Identities=20% Similarity=0.377 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++++++|+++|++||.|..|+++.++.+ |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 78 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRET---GKPKGYGFCEYQDQETALSAMRNLNGREFSGR----- 78 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTT---TEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS-----
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCC---CccceEEEEEECCHHHHHHHHHHhCCCeeCCc-----
Confidence 3589999999999999999999999999999999988654 88999999999999999999999999999998
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
.|+|+|++.+.
T Consensus 79 ~l~v~~a~~~~ 89 (104)
T 1p1t_A 79 ALRVDNAASEK 89 (104)
T ss_dssp CBEEEETTCTT
T ss_pred EEEEEeCCCcc
Confidence 69999998763
No 88
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=2.9e-18 Score=141.96 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=78.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 140 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT---KESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR----- 140 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSC---TTSCCEEEEEESBHHHHHHHHHHSTTEESSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CccceEEEEEECCHHHHHHHHHHhCCCEECCe-----
Confidence 4689999999999999999999999999999999988654 89999999999999999999999999999998
Q ss_pred cEEEEeccCCCCC
Q 023903 254 FLRLQFSRNPGPR 266 (275)
Q Consensus 254 ~LrV~~Ar~~~~r 266 (275)
.|+|+|++...++
T Consensus 141 ~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 141 ELRVQMARYGRPP 153 (158)
T ss_dssp EEEEEEECCSSCC
T ss_pred EEEEEECCCCCCC
Confidence 7999999876444
No 89
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-17 Score=131.70 Aligned_cols=86 Identities=17% Similarity=0.327 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC---
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP--- 250 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~--- 250 (275)
+.++|||+|||.++|+++|+++|++||.|..|+|+.++ + ++++|||||+|.+.++|++|++.|||..|.++..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-S---GTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-S---SCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-C---CCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 46899999999999999999999999999999999887 3 8999999999999999999999999999965421
Q ss_pred CCccEEEEeccCC
Q 023903 251 DSKFLRLQFSRNP 263 (275)
Q Consensus 251 ~~~~LrV~~Ar~~ 263 (275)
..++|+|.|++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 2337999999854
No 90
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=2.6e-18 Score=134.58 Aligned_cols=85 Identities=19% Similarity=0.298 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 173 DASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 173 ~~~~tLfVgNLP~~-vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
..+++|||+|||++ +|+++|+++|++||.|++|++ . +|||||+|.+.++|++|++.||+..|.++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~--- 90 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--H---------KGYAFVQYSNERHARAAVLGENGRVLAGQ--- 90 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--E---------TTEEEEECSSSHHHHHHHHHHTTCEETTE---
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--e---------CCEEEEEECCHHHHHHHHHHcCCCEECCe---
Confidence 34689999999999 999999999999999999988 1 26999999999999999999999999998
Q ss_pred CccEEEEeccCCCCCCCCCCCC
Q 023903 252 SKFLRLQFSRNPGPRSVFGARG 273 (275)
Q Consensus 252 ~~~LrV~~Ar~~~~r~ggg~~G 273 (275)
.|+|+|++.+.....+.++|
T Consensus 91 --~l~V~~a~~~~~~~~~~~~G 110 (110)
T 1wf1_A 91 --TLDINMAGEPKPDRSGPSSG 110 (110)
T ss_dssp --ECCEEESCCCCSCCCCCCCC
T ss_pred --EEEEEECCCCCCCCCCCCCC
Confidence 79999999765554444443
No 91
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=7.4e-19 Score=135.89 Aligned_cols=83 Identities=20% Similarity=0.331 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecC-cccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCC
Q 023903 171 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE-SKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 249 (275)
Q Consensus 171 pp~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~-~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~ 249 (275)
+....++|||+|||.++++++|+++|++|| |++|+|+.++ .+ |+++|||||+|.+.++|++|+ .|||..|.|+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~---g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~- 88 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNP---ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR- 88 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTT---CCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB-
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcC---CccCeEEEEEECCHHHHHHHH-hcCCCEECCe-
Confidence 344579999999999999999999999999 9999998876 33 889999999999999999999 8999999998
Q ss_pred CCCccEEEEeccCC
Q 023903 250 PDSKFLRLQFSRNP 263 (275)
Q Consensus 250 ~~~~~LrV~~Ar~~ 263 (275)
.|+|+|++..
T Consensus 89 ----~l~V~~a~~~ 98 (100)
T 2j76_E 89 ----RIRVDVADQA 98 (100)
T ss_dssp ----CCCCEECCCS
T ss_pred ----EEEEEeccCC
Confidence 6999999764
No 92
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7e-18 Score=131.40 Aligned_cols=83 Identities=20% Similarity=0.304 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEE-EEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~-vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
..++|||+|||+++|+++|+++|++||.|.+ |+|+.+. + |+++|||||+|.+.++|++|++. |+..+.++
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~-~---g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr---- 84 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF-Q---GRSTGEAFVQFASQEIAEKALKK-HKERIGHR---- 84 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS-S---SCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC-C---CCcceEEEEEECCHHHHHHHHHh-CcchhCCc----
Confidence 4689999999999999999999999999987 8887773 3 89999999999999999999987 99999998
Q ss_pred ccEEEEeccCCCCC
Q 023903 253 KFLRLQFSRNPGPR 266 (275)
Q Consensus 253 ~~LrV~~Ar~~~~r 266 (275)
.|+|.++......
T Consensus 85 -~i~v~~~~~~~~~ 97 (104)
T 1wg5_A 85 -YIEIFKSSRAEVR 97 (104)
T ss_dssp -CCEEEEECTTTSC
T ss_pred -EEEEEECCHHHHH
Confidence 6999998776443
No 93
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.5e-18 Score=128.11 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||+++|+++|+++|++| .|.+|+|+.+. + |+++|||||+|.+.++|++|++ ||+..|.++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~-~---g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr----- 77 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA-H---GNKTGYIFVDFSNEEEVKQALK-CNREYMGGR----- 77 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT-T---SCEEEEEEEECSSHHHHHHHHH-SCSEEETTE-----
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC-C---CCCceEEEEEECCHHHHHHHHH-hCCceeCCc-----
Confidence 46899999999999999999999999 99999999884 3 8999999999999999999999 999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|.+++.+
T Consensus 78 ~i~v~~a~~~ 87 (91)
T 2dgw_A 78 YIEVFREKSG 87 (91)
T ss_dssp EEEEEEESSC
T ss_pred EEEEEECCcC
Confidence 7999999875
No 94
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=144.46 Aligned_cols=81 Identities=12% Similarity=0.182 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCC--CEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG--~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
..++|||+|||+++|+++|+++|++|| .|++|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~t---g~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr--- 127 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRAN---GQSKGYAEVVVASENSVHKLLELLPGKVLNGE--- 127 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTT---CCEEEEEEEEESCHHHHHHHHHHSTTCEETTE---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECCe---
Confidence 358999999999999999999999999 9999999998765 99999999999999999999999999999998
Q ss_pred CccEEEEeccC
Q 023903 252 SKFLRLQFSRN 262 (275)
Q Consensus 252 ~~~LrV~~Ar~ 262 (275)
.|+|++++.
T Consensus 128 --~l~V~~a~~ 136 (156)
T 3n9u_C 128 --KVDVRPATR 136 (156)
T ss_dssp --ECEEEECCH
T ss_pred --EeEEEEcCC
Confidence 799999864
No 95
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-17 Score=127.48 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCC--CCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~f--G~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
++++|||+|||+++|+++|+++|++| |.|..|++. +|||||+|.+.++|++|++.|||..|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~--- 79 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----------RDYAFVHFSNREDAVEAMKALNGKVLDGS--- 79 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHSSEEETTE---
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----------CCeEEEEeCCHHHHHHHHHHhCCCEeCCc---
Confidence 57999999999999999999999999 999988764 26999999999999999999999999998
Q ss_pred CccEEEEeccCCCCC
Q 023903 252 SKFLRLQFSRNPGPR 266 (275)
Q Consensus 252 ~~~LrV~~Ar~~~~r 266 (275)
.|+|+|++.....
T Consensus 80 --~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 80 --PIEVTLAKPVDKD 92 (99)
T ss_dssp --EEEEECCCCCCCC
T ss_pred --EEEEEECCCCCCC
Confidence 7999999886443
No 96
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=5e-18 Score=137.23 Aligned_cols=79 Identities=20% Similarity=0.360 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|++|+++.++.+ ++++|||||+|.+.++|++|++.|||..|.++
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 133 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET---EKHRGFAFVEFELAEDAAAAIDNMNESELFGR----- 133 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTT---CCCCSEEEEEESCHHHHHHHHHHSTEEEETTE-----
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCC---CCcCcEEEEEECCHHHHHHHHHHhCCCEECCE-----
Confidence 4689999999999999999999999999999999988654 88999999999999999999999999999998
Q ss_pred cEEEEec
Q 023903 254 FLRLQFS 260 (275)
Q Consensus 254 ~LrV~~A 260 (275)
.|+|+||
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 7999986
No 97
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=8.1e-20 Score=144.55 Aligned_cols=85 Identities=21% Similarity=0.342 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEE--------EEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 245 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~--------vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~ 245 (275)
++++|||+|||.++++++|+++|++||.|.. |+|+.++.+ ++++|||||+|.+.++|++|++.|||..|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET---GKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4689999999999999999999999999998 888887654 88999999999999999999999999999
Q ss_pred CCCCCCCccEEEEeccCCCCC
Q 023903 246 DEDDPDSKFLRLQFSRNPGPR 266 (275)
Q Consensus 246 ~g~~~~~~~LrV~~Ar~~~~r 266 (275)
.++ .|+|+|++.+..+
T Consensus 83 ~g~-----~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGN-----PIKVSFATRRADF 98 (116)
Confidence 998 6999999876433
No 98
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=134.71 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=72.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|+. +++..|.|+ .
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~----g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr-----~ 80 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVE-TPGQKYKET-----D 80 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT----TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT-----T
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC----CCCccEEEEEECCHHHHHHHHH-cCCCEECCE-----E
Confidence 58999999999999999999999999999999998764 8899999999999999999998 999999998 6
Q ss_pred EEEEeccC
Q 023903 255 LRLQFSRN 262 (275)
Q Consensus 255 LrV~~Ar~ 262 (275)
|+|.|++.
T Consensus 81 l~V~~~~~ 88 (103)
T 1s79_A 81 LLILFKDD 88 (103)
T ss_dssp CEEEEHHH
T ss_pred EEEEEchH
Confidence 99998764
No 99
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=138.98 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 249 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~----~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~ 249 (275)
++++|||+|||+++++++|+ ++|++||.|++|.+... ++++|||||+|.+.++|++|++.|||..|.|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~------~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr- 100 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS------DDNSGKAYIVFATQESAQAFVEAFQGYPFQGN- 100 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC------CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC------CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC-
Confidence 46899999999999999876 79999999999887532 77899999999999999999999999999998
Q ss_pred CCCccEEEEeccCC
Q 023903 250 PDSKFLRLQFSRNP 263 (275)
Q Consensus 250 ~~~~~LrV~~Ar~~ 263 (275)
+|+|+||+.+
T Consensus 101 ----~l~V~~a~~~ 110 (127)
T 2a3j_A 101 ----PLVITFSETP 110 (127)
T ss_dssp ----CCEEEECCCC
T ss_pred ----EEEEEEccCc
Confidence 7999999875
No 100
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-18 Score=130.53 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCC-EEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCC-CeeCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVG-YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG-YRMDEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~-i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG-~~~~g~~~~ 251 (275)
++++|||+|||.++|+++|+++|++||. |..+.+. . +|||||+|.+.++|++|++.||| ..|.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-~---------~g~afV~f~~~~~A~~A~~~l~g~~~~~g~--- 73 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-K---------SGYAFVDYPDQNWAIRAIETLSGKVELHGK--- 73 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-E---------TTEEEECCSCHHHHHHHHHHHTTTCEETTE---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-C---------CCEEEEEECCHHHHHHHHHHccCCeeECCE---
Confidence 4689999999999999999999999999 5555442 2 37999999999999999999999 999998
Q ss_pred CccEEEEeccCCCCCCCCC
Q 023903 252 SKFLRLQFSRNPGPRSVFG 270 (275)
Q Consensus 252 ~~~LrV~~Ar~~~~r~ggg 270 (275)
.|+|+|++.+..++...
T Consensus 74 --~l~v~~a~~~~~~~~~~ 90 (93)
T 2cqh_A 74 --IMEVDYSVSKKLRSSGP 90 (93)
T ss_dssp --ECEEEECCCCCCCCCSC
T ss_pred --EEEEEEccCccccCCCC
Confidence 79999999876554433
No 101
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7e-18 Score=127.45 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|.+|++++ +||||+|.+.++|++|++.|||..+.++
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g~----- 71 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-----------DYAFVHMEKEADAKAAIAQLNGKEVKGK----- 71 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESCHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCEECCc-----
Confidence 468999999999999999999999999999999872 3999999999999999999999999998
Q ss_pred cEEEEeccCCCCCCCC
Q 023903 254 FLRLQFSRNPGPRSVF 269 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~gg 269 (275)
.|+|+|++....+.++
T Consensus 72 ~l~v~~a~~~~~~~~~ 87 (90)
T 2dnp_A 72 RINVELSTKGQKKSGP 87 (90)
T ss_dssp ECEEEESCCCCCCCSC
T ss_pred EEEEEECCCCCCCCCC
Confidence 7999999987555443
No 102
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.8e-18 Score=136.57 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG--YRMDEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG--~~~~g~~~~ 251 (275)
++++|||+|||+++||++|+++|++||.|++|+|+.++ |||||+|++.++|++|++.|++ ..|.|+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k---------G~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr--- 97 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK---------NQAFIEMNTEEAANTMVNYYTSVTPVLRGQ--- 97 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG---------TEEEEECSCHHHHHHHHHHHHHHCCCBTTB---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC---------CEEEEEECCHHHHHHHHHHhccCCceECCe---
Confidence 47999999999999999999999999999999998653 7999999999999999999984 678888
Q ss_pred CccEEEEeccCCCCC
Q 023903 252 SKFLRLQFSRNPGPR 266 (275)
Q Consensus 252 ~~~LrV~~Ar~~~~r 266 (275)
+|+|+||+....+
T Consensus 98 --~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 98 --PIYIQFSNHKELK 110 (119)
T ss_dssp --CCEEEECSSSSCC
T ss_pred --EEEEEEccCCCCC
Confidence 7999999886544
No 103
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-19 Score=135.94 Aligned_cols=84 Identities=17% Similarity=0.274 Sum_probs=74.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|.. +++.+..+ |+++|||||+|.+.++|++|++ |||..|.++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~---g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~----- 85 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRT---GTNRKFGYVDFESAEDLEKALE-LTGLKVFGN----- 85 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEE---ETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCC---CCcCcEEEEEECCHHHHHHHHh-cCCcEECCc-----
Confidence 5689999999999999999999999999887 55555444 7899999999999999999998 999999998
Q ss_pred cEEEEeccCCCCCC
Q 023903 254 FLRLQFSRNPGPRS 267 (275)
Q Consensus 254 ~LrV~~Ar~~~~r~ 267 (275)
.|+|+|++.+..++
T Consensus 86 ~l~V~~a~~~~~~~ 99 (101)
T 1fj7_A 86 EIKLEKPKGRDGTR 99 (101)
T ss_dssp CCEEECCSCCCCSS
T ss_pred EEEEEEcCCCCCCC
Confidence 69999998765443
No 104
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.4e-18 Score=125.79 Aligned_cols=74 Identities=22% Similarity=0.348 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~L-nG~~~~g~~~~~ 252 (275)
++++|||+|||.++|+++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++.| ++..+.++
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~---- 77 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---------QQCAFIQFATRQAAEVAAEKSFNKLIVNGR---- 77 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---------GTEEEEEESSHHHHHHHHHTTTTTCEETTE----
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---------CCEEEEEECCHHHHHHHHHHhcCCeeECCC----
Confidence 4689999999999999999999999999999999864 379999999999999999999 99999998
Q ss_pred ccEEEEecc
Q 023903 253 KFLRLQFSR 261 (275)
Q Consensus 253 ~~LrV~~Ar 261 (275)
.|+|+|||
T Consensus 78 -~l~v~~ak 85 (85)
T 2ytc_A 78 -RLNVKWGR 85 (85)
T ss_dssp -ECCEEECC
T ss_pred -EEEEEecC
Confidence 79999986
No 105
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=4.5e-18 Score=132.72 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCC------CHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 023903 174 ASSTLYVEGLPADS------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 247 (275)
Q Consensus 174 ~~~tLfVgNLP~~v------teeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g 247 (275)
.+++|||+|||+++ |+++|+++|++||.|.+|+|+. .+ |+++|||||+|.+.++|++|++.|||..|.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~---g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--ED---GKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BT---TBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CC---CCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 46899999999999 7899999999999999999883 22 8999999999999999999999999999999
Q ss_pred CCCCCccEEEEeccC
Q 023903 248 DDPDSKFLRLQFSRN 262 (275)
Q Consensus 248 ~~~~~~~LrV~~Ar~ 262 (275)
++ +|+|+|+..
T Consensus 89 ~~----~l~V~~a~~ 99 (105)
T 2nlw_A 89 QH----TFRVNLFTD 99 (105)
T ss_dssp TC----EEEEECSCC
T ss_pred Cc----eEEEEEcch
Confidence 74 599999875
No 106
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=5.2e-18 Score=133.53 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
.+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.+ +..|.|+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t---g~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~---- 94 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT---KRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK---- 94 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTT---CCCTTCEEEEESSHHHHHHHHHSS-CEEETTE----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCC---CCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE----
Confidence 35789999999999999999999999999999999988754 889999999999999999999876 5889988
Q ss_pred ccEEEEeccCCC
Q 023903 253 KFLRLQFSRNPG 264 (275)
Q Consensus 253 ~~LrV~~Ar~~~ 264 (275)
.|+|++++...
T Consensus 95 -~l~V~~a~~~~ 105 (109)
T 2rs2_A 95 -TIDPKVAFPRR 105 (109)
T ss_dssp -EEEEEECCCCC
T ss_pred -EEEEEEccCCC
Confidence 79999998754
No 107
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=1.7e-18 Score=141.73 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=78.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|+.|+|+.++.+ ++++|||||+|.+.++|++|++.|||..|.++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~---g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~----- 117 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT---KESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR----- 117 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSS---SSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCEECCE-----
Confidence 4689999999999999999999999999999999987654 88999999999999999999999999999998
Q ss_pred cEEEEeccCCCCC
Q 023903 254 FLRLQFSRNPGPR 266 (275)
Q Consensus 254 ~LrV~~Ar~~~~r 266 (275)
.|+|+|++...+.
T Consensus 118 ~l~V~~a~~~~~~ 130 (135)
T 2lea_A 118 ELRVQMARYGRPP 130 (135)
T ss_dssp CCEEEECCCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 6999999876443
No 108
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.1e-18 Score=131.31 Aligned_cols=78 Identities=21% Similarity=0.399 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||.++|+++|+++|++||.|..|+|+.++ |||||+|.+.++|++|++.|||..|.++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~---------g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 89 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK---------GYSFVRFSTHESAAHAIVSVNGTTIEGH----- 89 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT---------TEEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC---------CEEEEEECCHHHHHHHHHHcCCCEECCc-----
Confidence 46899999999999999999999999999999998652 7999999999999999999999999998
Q ss_pred cEEEEeccCCCC
Q 023903 254 FLRLQFSRNPGP 265 (275)
Q Consensus 254 ~LrV~~Ar~~~~ 265 (275)
.|+|+|++....
T Consensus 90 ~l~v~~a~~~~~ 101 (109)
T 1x4g_A 90 VVKCYWGKESPD 101 (109)
T ss_dssp ECEEECCCCCCS
T ss_pred EEEEEecCCCCC
Confidence 799999988643
No 109
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=131.35 Aligned_cols=77 Identities=25% Similarity=0.365 Sum_probs=70.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccE
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 255 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~L 255 (275)
++|||+|||.++|+++|+++|++||.|++|+++.+ ++|||||+|.+.++|++|++.|||..+.++ .|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-----~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--------PPGFAFVEFEDPRDAEDAVRGLDGKVICGS-----RV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--------SSSEEEEECSSHHHHHHHHHHHHHSCSSSC-----CC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--------CCCEEEEEECCHHHHHHHHHHHCCCeECCc-----EE
Confidence 58999999999999999999999999999999865 347999999999999999999999999998 69
Q ss_pred EEEeccCCCC
Q 023903 256 RLQFSRNPGP 265 (275)
Q Consensus 256 rV~~Ar~~~~ 265 (275)
+|+|++....
T Consensus 68 ~V~~a~~~~~ 77 (101)
T 2hvz_A 68 RVELSTGMPR 77 (101)
T ss_dssp EEEESSSCCC
T ss_pred EEEEccCCCC
Confidence 9999987643
No 110
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=2.1e-18 Score=125.72 Aligned_cols=75 Identities=17% Similarity=0.329 Sum_probs=70.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEE
Q 023903 177 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 256 (275)
Q Consensus 177 tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~Lr 256 (275)
+|||+|||.++|+++|+++|++||.|.+++++.++.+ ++++|||||+|.+.++|++|++ ||+..+.|+ .|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~-----~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTT---NRHRGFGFVTFESEDIVEKVCE-IHFHEINNK-----MVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSS---TTSCBEEEEECSCHHHHHHHHS-SSCCCSSSC-----CCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcCcEEEEEECCHHHHHHHHH-CCCCEECCE-----EEE
Confidence 5999999999999999999999999999999887654 8899999999999999999997 999999998 699
Q ss_pred EEec
Q 023903 257 LQFS 260 (275)
Q Consensus 257 V~~A 260 (275)
|+||
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9886
No 111
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-18 Score=132.89 Aligned_cols=82 Identities=16% Similarity=0.237 Sum_probs=74.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCC-EEEEEEe-ecCcccCCCCcceEEEEEeCCHHHHHHHHHHhC--CCeeCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVG-YKEVRLV-IKESKLRGGDPLILCFVDFENPACAATALSALQ--GYRMDEDD 249 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~-i~~vrl~-~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~Ln--G~~~~g~~ 249 (275)
++++|||+|||.++|+++|+++|++||. |.+|+++ .++.+ |+++|||||+|.+.++|++|++.|| +..+.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~- 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADK---MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH- 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTT---TTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTB-
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCC---CCcCcEEEEEecCHHHHHHHHHHhhCCCceecCC-
Confidence 4689999999999999999999999998 9999988 55543 7899999999999999999999996 5899998
Q ss_pred CCCccEEEEeccCC
Q 023903 250 PDSKFLRLQFSRNP 263 (275)
Q Consensus 250 ~~~~~LrV~~Ar~~ 263 (275)
.|+|+|++..
T Consensus 83 ----~l~V~~a~~~ 92 (109)
T 2dis_A 83 ----QIAVDWAEPE 92 (109)
T ss_dssp ----CCEEEESCSS
T ss_pred ----eEEEEEcCCC
Confidence 6999999865
No 112
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.4e-18 Score=135.27 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCE-EEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGY-KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i-~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
.+.++|||+|||+++|+++|+++|++||.| ..|+|+.++ + |+++|||||+|.+.++|++|++. |+..|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~---g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr--- 84 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-N---GQGLGQALVQFKNEDDARKSERL-HRKKLNGR--- 84 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-T---SSCSSCEEEECSSHHHHHHHGGG-CSEEETTE---
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-C---CCcceEEEEEECCHHHHHHHHHh-CCCccCCe---
Confidence 357899999999999999999999999999 889999887 3 89999999999999999999987 99999998
Q ss_pred CccEEEEeccCC
Q 023903 252 SKFLRLQFSRNP 263 (275)
Q Consensus 252 ~~~LrV~~Ar~~ 263 (275)
.|+|.+++..
T Consensus 85 --~i~v~~a~~~ 94 (114)
T 2cpy_A 85 --EAFVHVVTLE 94 (114)
T ss_dssp --EEEEEEECHH
T ss_pred --EEEEEECCHH
Confidence 7999998753
No 113
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=4e-18 Score=129.93 Aligned_cols=80 Identities=23% Similarity=0.367 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 249 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~----~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~ 249 (275)
++++|||+|||.++++++|+ ++|++||.|..|+++.. |+++|||||+|.+.++|++|++.|||..+.++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~- 79 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFYDK- 79 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH------HHHTTCEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC------CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc-
Confidence 47999999999999999999 99999999999988732 67789999999999999999999999999988
Q ss_pred CCCccEEEEeccCCC
Q 023903 250 PDSKFLRLQFSRNPG 264 (275)
Q Consensus 250 ~~~~~LrV~~Ar~~~ 264 (275)
.|+|+|++.+.
T Consensus 80 ----~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 ----PMRIQYAKTDS 90 (97)
T ss_dssp ----ECEEEECSSCC
T ss_pred ----EEEEEEccCCC
Confidence 79999998753
No 114
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.7e-18 Score=136.79 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 172 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 172 p~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
.....+|||+|||+++|+++|+++|++||.|..+.++.++.+ |+++|||||+|.+.++|++|++ ||+..|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~---g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr--- 94 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPN---GKATGEGFVEFRNEADYKAALC-RHKQYMGNR--- 94 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTT---SSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS---
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCC---CCCCeEEEEEECCHHHHHHHHH-hCCCeECCc---
Confidence 345689999999999999999999999999988555555443 8999999999999999999999 999999998
Q ss_pred CccEEEEeccC
Q 023903 252 SKFLRLQFSRN 262 (275)
Q Consensus 252 ~~~LrV~~Ar~ 262 (275)
.|+|.++..
T Consensus 95 --~i~V~~a~~ 103 (124)
T 1wel_A 95 --FIQVHPITK 103 (124)
T ss_dssp --CBEEEEECH
T ss_pred --EEEEEECCH
Confidence 699999865
No 115
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=5.8e-18 Score=129.01 Aligned_cols=80 Identities=23% Similarity=0.370 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|..+ .. .++++|||||+|.+.++|++|++.|||..|.|+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 81 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQ----DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR----- 81 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EE----TTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CC----CCCcceEEEEEECCHHHHHHHHHHhCCCEECCe-----
Confidence 46899999999999999999999999877655 22 178899999999999999999999999999998
Q ss_pred cEEEEeccCCCCC
Q 023903 254 FLRLQFSRNPGPR 266 (275)
Q Consensus 254 ~LrV~~Ar~~~~r 266 (275)
.|+|+|++.+..+
T Consensus 82 ~l~v~~a~~~~~~ 94 (96)
T 1fjc_A 82 SVSLYYTGEKGGT 94 (96)
T ss_dssp EEEEEECSSSCCC
T ss_pred EEEEEEcCCCCCC
Confidence 7999999876543
No 116
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=1.2e-17 Score=144.89 Aligned_cols=85 Identities=24% Similarity=0.311 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 171 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 171 pp~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
|..+++||||+|||+++||++|+++|++||.|++|+|+.++.+ ++++|||||+|.+.++|++|++.+|+..+.++
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~-- 85 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT---RRSLGYAYVNFQQPADAERALDTMNFDVIKGK-- 85 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCC---CCccccccceeCCHHHHHHHHHHhhhhhcCCc--
Confidence 3445789999999999999999999999999999999998765 89999999999999999999999999999998
Q ss_pred CCccEEEEeccCC
Q 023903 251 DSKFLRLQFSRNP 263 (275)
Q Consensus 251 ~~~~LrV~~Ar~~ 263 (275)
.|++.++...
T Consensus 86 ---~i~~~~~~~~ 95 (213)
T 4f02_A 86 ---PVRIMWSQRD 95 (213)
T ss_dssp ---ECEEEECCCC
T ss_pred ---cccccccccc
Confidence 6999998654
No 117
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=127.73 Aligned_cols=79 Identities=28% Similarity=0.490 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.+++|||+|||+++|+++|+++|++||.|. ++++.+ +++|||||+|.+.++|++|++.|||..|.++
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 84 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-------GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD----- 84 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCCSSSS-----
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-------CCCcEEEEEECCHHHHHHHHHHhCCCEECCc-----
Confidence 468999999999999999999999999996 666643 4568999999999999999999999999998
Q ss_pred cEEEEeccCCCC
Q 023903 254 FLRLQFSRNPGP 265 (275)
Q Consensus 254 ~LrV~~Ar~~~~ 265 (275)
.|+|+|++.+..
T Consensus 85 ~l~V~~a~~~~~ 96 (97)
T 2e5j_A 85 TLRVALARQQRD 96 (97)
T ss_dssp CCEEEECCCCCC
T ss_pred EEEEEEcCCCCC
Confidence 699999987643
No 118
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-18 Score=125.18 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=70.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccE
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 255 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~L 255 (275)
++|||+|||.++++++|+++|++||.|..++++.++.+ |+++|||||+|.+.++|++|++.++ ..+.|+ .|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~-----~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT---KRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK-----TI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCS---SSCSSEEEECCCCTTHHHHHHHTTT-CCCSSC-----CC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCC---CCcCceEEEEEcCHHHHHHHHHhCC-CccCCE-----EE
Confidence 47999999999999999999999999999999988654 8899999999999999999999999 999998 69
Q ss_pred EEEec
Q 023903 256 RLQFS 260 (275)
Q Consensus 256 rV~~A 260 (275)
+|++|
T Consensus 72 ~v~~a 76 (77)
T 1uaw_A 72 DPKVA 76 (77)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99987
No 119
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=1.1e-18 Score=131.51 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=72.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccE
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 255 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~L 255 (275)
++|||+|||.++++++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.+ |++|++.|||..+.|+ .|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~-----~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRET---KKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR-----TI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSS---CCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS-----SC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCC---CCcceEEEEEECCHH-HHHHHHHhCCCEECCe-----EE
Confidence 58999999999999999999999999999999988765 889999999999999 9999999999999998 69
Q ss_pred EEEeccCCC
Q 023903 256 RLQFSRNPG 264 (275)
Q Consensus 256 rV~~Ar~~~ 264 (275)
+|+||....
T Consensus 73 ~V~~a~~~~ 81 (90)
T 2ki2_A 73 RVTEANPKK 81 (90)
T ss_dssp SEEEC----
T ss_pred EEEEcCCCC
Confidence 999998753
No 120
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.8e-17 Score=123.77 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
.++++|||+|| ++|+++|+++|++||.|..|+|.. ++|||||+|.+.++|++|++.|||..|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~---- 77 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---------PRNCAFVTYEKMESADQAVAELNGTQVESV---- 77 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHTTTEEETTE----
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC---------CCCEEEEEECCHHHHHHHHHHhCCCeECCe----
Confidence 35789999996 899999999999999999999852 347999999999999999999999999988
Q ss_pred ccEEEEeccCCCCCCC
Q 023903 253 KFLRLQFSRNPGPRSV 268 (275)
Q Consensus 253 ~~LrV~~Ar~~~~r~g 268 (275)
.|+|+|++.+..+..
T Consensus 78 -~l~v~~a~~~~~~~~ 92 (97)
T 1x5p_A 78 -QLKVNIARKQPMLDS 92 (97)
T ss_dssp -EEEEECCSSCCCCCS
T ss_pred -EEEEEECCCCCCCCC
Confidence 799999988754443
No 121
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=4.3e-17 Score=139.39 Aligned_cols=83 Identities=20% Similarity=0.287 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 172 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 172 p~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
+.++++|||+|||+++++++|+++|++||.|++|+|+.++ + ++++|||||+|.+.++|++|++.|||..|.++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~---g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr--- 157 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-S---GRSLGTADVHFERRADALKAMKQYKGVPLDGR--- 157 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-T---SSCSCCEEEEESCHHHHHHHHHHSTTCBCSSS---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-C---CCEeeEEEEEeCCHHHHHHHHHHhCCCEECCE---
Confidence 3457899999999999999999999999999999999877 3 88999999999999999999999999999998
Q ss_pred CccEEEEeccCC
Q 023903 252 SKFLRLQFSRNP 263 (275)
Q Consensus 252 ~~~LrV~~Ar~~ 263 (275)
.|+|+||...
T Consensus 158 --~l~V~~a~~~ 167 (177)
T 2f3j_A 158 --PMDIQLVASQ 167 (177)
T ss_dssp --BCEEEEESSG
T ss_pred --EEEEEEecCC
Confidence 7999999764
No 122
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=9.4e-18 Score=133.95 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCC---EEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~---i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
..++|||+|||+++|+++|+++|++||. |..|+|+.++. |+++|||||+|.+.++|++|++ ||+..|.++
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr-- 88 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE----GRQSGEAFVELESEDDVKLALK-KDRESMGHR-- 88 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS----SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE--
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe--
Confidence 4689999999999999999999999999 89999998764 8999999999999999999999 999999998
Q ss_pred CCccEEEEeccC
Q 023903 251 DSKFLRLQFSRN 262 (275)
Q Consensus 251 ~~~~LrV~~Ar~ 262 (275)
.|+|.++..
T Consensus 89 ---~i~V~~a~~ 97 (118)
T 2db1_A 89 ---YIEVFKSHR 97 (118)
T ss_dssp ---EEEEEEECH
T ss_pred ---EEEEEECCH
Confidence 799999854
No 123
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=7.3e-18 Score=149.68 Aligned_cols=80 Identities=11% Similarity=0.145 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCC--CEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG--~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
..++|||+|||+++|+++|+++|++|| .|++|+|+.++.+ |++||||||+|.+.++|++||+.||++.|.++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~t---g~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr--- 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN---GQSKGFALVGVGSEASSKKLMDLLPKRELHGQ--- 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTT---CCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB---
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCeECCE---
Confidence 467999999999999999999999999 9999999998765 99999999999999999999999999999998
Q ss_pred CccEEEEecc
Q 023903 252 SKFLRLQFSR 261 (275)
Q Consensus 252 ~~~LrV~~Ar 261 (275)
.|+|+|++
T Consensus 141 --~l~V~~a~ 148 (229)
T 3q2s_C 141 --NPVVTPVN 148 (229)
T ss_dssp --CCEEEECC
T ss_pred --EeEEEECC
Confidence 69999975
No 124
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=2.7e-17 Score=126.78 Aligned_cols=76 Identities=21% Similarity=0.352 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 172 PDASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 172 p~~~~tLfVgNLP~-~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
..++++|||+|||+ ++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..+.|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-- 85 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIEXESQEMNFGK-- 85 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHTTSEETTE--
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECCE--
Confidence 34579999999998 99999999999999999999883 27999999999999999999999999998
Q ss_pred CCccEEEEeccCC
Q 023903 251 DSKFLRLQFSRNP 263 (275)
Q Consensus 251 ~~~~LrV~~Ar~~ 263 (275)
.|+|+|++..
T Consensus 86 ---~l~V~~a~~~ 95 (97)
T 2xnq_A 86 ---KLILEVSSSN 95 (97)
T ss_dssp ---ECEEEECCCC
T ss_pred ---EEEEEecCCC
Confidence 7999999864
No 125
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=5.7e-18 Score=125.70 Aligned_cols=69 Identities=25% Similarity=0.417 Sum_probs=63.8
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 175 SSTLYVEGLPADS------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 175 ~~tLfVgNLP~~v------teeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
+++|||+|||.++ |+++|+++|++||.|.+|+++. . + |+++|||||+|.+.++|++|++.|||..+.|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~-~-~---g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-E-D---GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC-B-T---TBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC-C-C---CcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 3799999999999 7899999999999999999873 2 2 89999999999999999999999999999998
No 126
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=2.9e-17 Score=127.18 Aligned_cols=74 Identities=19% Similarity=0.403 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|+.|++++ +||||+|.+.++|++|++.||+..|.++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g~----- 73 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-----------DYAFIHFDERDGAVKAMEEMNGKDLEGE----- 73 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESSHHHHHHHHHHHTTEEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----------CEEEEEeCCHHHHHHHHHHHCCCccCCC-----
Confidence 368999999999999999999999999999998862 4999999999999999999999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|+|++.+
T Consensus 74 ~l~v~~a~~~ 83 (103)
T 2dgu_A 74 NIEIVFAKPP 83 (103)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 7999999875
No 127
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=2.3e-17 Score=129.83 Aligned_cols=77 Identities=31% Similarity=0.584 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|++|+++ + |||||+|.+.++|++|++.|||..|.|+
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--k---------g~afV~f~~~~~A~~Ai~~l~g~~~~g~----- 93 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--N---------GFAFVEFEEAESAAKAIEEVHGKSFANQ----- 93 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--T---------TEEEEECSSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--C---------CEEEEEECCHHHHHHHHHHcCCCEECCe-----
Confidence 57999999999999999999999999999999987 2 6999999999999999999999999988
Q ss_pred cEEEEeccCCCCC
Q 023903 254 FLRLQFSRNPGPR 266 (275)
Q Consensus 254 ~LrV~~Ar~~~~r 266 (275)
.|+|+|++.+..+
T Consensus 94 ~l~V~~a~~~~~r 106 (108)
T 2jvo_A 94 PLEVVYSKLPAKR 106 (108)
T ss_dssp ECEEESCSCCC--
T ss_pred EEEEEEecCCCCC
Confidence 7999999886543
No 128
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.2e-17 Score=128.57 Aligned_cols=75 Identities=19% Similarity=0.356 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.+++|||+|||.++++++|+++|++||.|++++++.. +|||||+|.+.++|++|++.|||..+.++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~---------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----- 91 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE---------KGCCFIKYDTHEQAAVCIVALANFPFQGR----- 91 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT---------TTEEEEECSSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC---------CCEEEEEECCHHHHHHHHHHhCCCeECCe-----
Confidence 3689999999999999999999999999999998732 37999999999999999999999999998
Q ss_pred cEEEEeccC
Q 023903 254 FLRLQFSRN 262 (275)
Q Consensus 254 ~LrV~~Ar~ 262 (275)
.|+|+|++.
T Consensus 92 ~l~V~~a~~ 100 (101)
T 2la4_A 92 NLRTGWGKE 100 (101)
T ss_dssp ECCCCBCCC
T ss_pred EEEEEeccC
Confidence 799999976
No 129
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=6.8e-17 Score=131.51 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=67.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceE-EEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLIL-CFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGf-aFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
-.|||+||++.+|+++|+++|++||.|++|+|+.+ . || |||+|.+.++|++|+++|||..|.+.. .+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~--------Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~---~~ 93 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-N--------GIQAMVEFESVLCAQKAKAALNGADIYAGC---CT 93 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-S--------SEEEEEEESSHHHHHHHHHHHTTCCCBTTB---SE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-C--------CCEEEEEECCHHHHHHHHHHhCCCEecCCC---eE
Confidence 34689999999999999999999999999999742 1 66 999999999999999999999998841 16
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|+|+||+.+
T Consensus 94 l~V~~Ak~~ 102 (124)
T 2e5i_A 94 LKIEYARPT 102 (124)
T ss_dssp EEEECCSCS
T ss_pred EEEEEecCC
Confidence 999999876
No 130
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=136.65 Aligned_cols=85 Identities=25% Similarity=0.452 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEE--------EEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 023903 172 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEV--------RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 243 (275)
Q Consensus 172 p~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~v--------rl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~ 243 (275)
..++++|||+|||+++|+++|+++|++||.|..+ ++.. + |+++|||||+|.+.++|++|++.|||+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~---~---g~~~g~afV~f~~~~~A~~Ai~~lng~ 115 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK---E---GRMKGQAFIGLPNEKAAAKALKEANGY 115 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE---E---TTTEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc---C---CCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 3457999999999999999999999999998763 3322 2 888999999999999999999999999
Q ss_pred eeCCCCCCCccEEEEeccCCCCCC
Q 023903 244 RMDEDDPDSKFLRLQFSRNPGPRS 267 (275)
Q Consensus 244 ~~~g~~~~~~~LrV~~Ar~~~~r~ 267 (275)
.|.|+ .|+|+||+....+.
T Consensus 116 ~~~g~-----~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 116 VLFGK-----PMVVQFARSARPKQ 134 (143)
T ss_dssp EETTE-----ECEEEECCCSCC--
T ss_pred EeCCc-----EEEEEECCCCCCcc
Confidence 99998 79999998765443
No 131
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=133.41 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCC--CeeCCCCC
Q 023903 174 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG--YRMDEDDP 250 (275)
Q Consensus 174 ~~~tLfVgNLP~~-vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG--~~~~g~~~ 250 (275)
++++|||+|||++ +|+++|+++|++||.|.+|+|++. ||||||+|++.++|++|++.||+ ..|.|+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr-- 92 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM---------KSQAFIEMETREDAMAMVDHCLKKALWFQGR-- 92 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT---------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSS--
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC---------CCEEEEEECCHHHHHHHHHHhccCCceECCE--
Confidence 4799999999998 999999999999999999999743 37999999999999999999865 558888
Q ss_pred CCccEEEEeccCC
Q 023903 251 DSKFLRLQFSRNP 263 (275)
Q Consensus 251 ~~~~LrV~~Ar~~ 263 (275)
+|+|+||+..
T Consensus 93 ---~l~V~~a~~~ 102 (112)
T 1x4f_A 93 ---CVKVDLSEKY 102 (112)
T ss_dssp ---CCEEEEECSC
T ss_pred ---EEEEEECccc
Confidence 6999999865
No 132
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.9e-17 Score=125.80 Aligned_cols=75 Identities=21% Similarity=0.365 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 174 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP~-~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
++++|||+|||+ ++|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..+.++
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 73 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIECESQEMNFGK---- 73 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----------TTEEEEEESCHHHHHHHHHHHTCSSCBTT----
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCeeCCc----
Confidence 479999999999 99999999999999999999884 26999999999999999999999999998
Q ss_pred ccEEEEeccCCC
Q 023903 253 KFLRLQFSRNPG 264 (275)
Q Consensus 253 ~~LrV~~Ar~~~ 264 (275)
.|+|+|++...
T Consensus 74 -~l~V~~a~~~~ 84 (96)
T 2kvi_A 74 -KLILEVSSSNA 84 (96)
T ss_dssp -TBCEEEEECCC
T ss_pred -EEEEEEcCcCC
Confidence 69999998753
No 133
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=9.5e-17 Score=131.10 Aligned_cols=81 Identities=20% Similarity=0.356 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|..++++.+..+ |.++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 157 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT---GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR----- 157 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTT---CCEEEEEEEEESCHHHHHHHHHHHTTCEETTE-----
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCccCCc-----
Confidence 4689999999999999999999999999999999988654 88999999999999999999999999999998
Q ss_pred cEEEEeccC
Q 023903 254 FLRLQFSRN 262 (275)
Q Consensus 254 ~LrV~~Ar~ 262 (275)
.|+|+||+.
T Consensus 158 ~i~v~~a~~ 166 (166)
T 3md3_A 158 PLRINWAAK 166 (166)
T ss_dssp ECEEEESCC
T ss_pred EEEEEecCC
Confidence 799999974
No 134
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=1e-17 Score=133.66 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCC-CEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG-~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
....+|||+|||+++|+++|+++|++|| .|..++++.+ +++|||||+|.+.++|++|++.|||..|.|+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-------~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr--- 95 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-------DFDGTGALEFPSEEILVEALERLNNIEFRGS--- 95 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-------SSSCCEEEEESSHHHHHHHHHHTTTEEETTE---
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-------CCCCEEEEEECCHHHHHHHHHHcCCCEECCe---
Confidence 3468999999999999999999999999 8999888532 3569999999999999999999999999998
Q ss_pred CccEEEEeccCCC
Q 023903 252 SKFLRLQFSRNPG 264 (275)
Q Consensus 252 ~~~LrV~~Ar~~~ 264 (275)
.|+|++++.+.
T Consensus 96 --~i~V~~a~~~p 106 (111)
T 2jvr_A 96 --VITVERDDNPP 106 (111)
T ss_dssp --EEEEEESCC--
T ss_pred --EEEEEECCCCC
Confidence 79999998754
No 135
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-17 Score=130.21 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=69.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||+|||.++|+++|+++|++||.|..|+|+.. +|||||+|.+.++|++|++.|||+.|.++ +
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~-----~ 75 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG---------GITAIVEFLEPLEARKAFRHLAYSKFHHV-----P 75 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS---------SSCEEEEESCHHHHHHHHHHHTTCBSSSS-----B
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---------CCEEEEEeCCHHHHHHHHHHhCCCEECCe-----E
Confidence 579999999999999999999999999999988743 37999999999999999999999999998 7
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|+|+|++..
T Consensus 76 l~V~~a~~~ 84 (111)
T 1whx_A 76 LYLEWAPIG 84 (111)
T ss_dssp CEEEEEETT
T ss_pred EEEEECCCC
Confidence 999999864
No 136
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=5e-17 Score=157.12 Aligned_cols=83 Identities=22% Similarity=0.368 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
.+.++|||+|||++||+++|.++|++||.|+.|+|+.++.+ |+++|||||+|.+.++|++||+.|||+.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr---- 172 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRS---GKPRGYAFIEYEHERDMHSAYKHADGKKIDGR---- 172 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCC---CCccceEEEeeccHHHHHHHHHHcCCCEECCE----
Confidence 35689999999999999999999999999999999988654 89999999999999999999999999999998
Q ss_pred ccEEEEeccCC
Q 023903 253 KFLRLQFSRNP 263 (275)
Q Consensus 253 ~~LrV~~Ar~~ 263 (275)
.|+|+|++..
T Consensus 173 -~i~V~~a~~~ 182 (437)
T 3pgw_S 173 -RVLVDVERGR 182 (437)
T ss_pred -EEEEEEeCCC
Confidence 7999999864
No 137
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=8.6e-17 Score=131.49 Aligned_cols=81 Identities=25% Similarity=0.459 Sum_probs=76.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
+++|||+|||.++|+++|+++|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++.|||..+.++ .
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~-----~ 73 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKIT---GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----T 73 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----E
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CcceeEEEEEECCHHHHHHHHHHcCCCccCCc-----e
Confidence 589999999999999999999999999999999988754 89999999999999999999999999999988 7
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|+|+|++..
T Consensus 74 l~v~~~~~~ 82 (167)
T 1fxl_A 74 IKVSYARPS 82 (167)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999999764
No 138
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=2.2e-17 Score=136.16 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCC---EEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~---i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
..++|||+|||+++|+++|+++|++||. |..|+|+.++. |+++|||||+|.+.++|++|++ ||+..|.++
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~----g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr-- 115 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE----GRQSGEAFVELGSEDDVKMALK-KDRESMGHR-- 115 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS----SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE--
Confidence 3689999999999999999999999999 88999998864 8999999999999999999999 999999998
Q ss_pred CCccEEEEeccC
Q 023903 251 DSKFLRLQFSRN 262 (275)
Q Consensus 251 ~~~~LrV~~Ar~ 262 (275)
.|+|.++..
T Consensus 116 ---~i~V~~a~~ 124 (136)
T 2hgl_A 116 ---YIEVFKSHR 124 (136)
T ss_dssp ---EEEEEECCH
T ss_pred ---EEEEEECCh
Confidence 799998864
No 139
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=1.2e-16 Score=136.54 Aligned_cols=83 Identities=19% Similarity=0.387 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||.++|+++|+++|++||.|+.|+++.++.+ |+++|||||+|.+.++|.+|++.|||..|.++
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~----- 195 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTT---GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ----- 195 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCBCSSS-----
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCC---CCcCceEEEEecCHHHHHHHHHHccCCEeCCc-----
Confidence 4689999999999999999999999999999999988654 88999999999999999999999999999998
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
.|+|+|++.+.
T Consensus 196 ~i~V~~a~~~~ 206 (216)
T 2qfj_A 196 YLRVGKAVTPP 206 (216)
T ss_dssp BCEEEECSSCS
T ss_pred EEEEEEecCCC
Confidence 79999998863
No 140
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=130.34 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=73.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCC---EEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 249 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~---i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~ 249 (275)
+..++|||+|||+++|+++|+++|++||. |..|+|+.++. |+++|||||+|.+.++|++|++ +|+..+.++
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr- 82 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD----GKRRGDALIEMESEQDVQKALE-KHRMYMGQR- 82 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT----STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS-
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC----CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe-
Confidence 35789999999999999999999999988 89999987764 8899999999999999999999 999999988
Q ss_pred CCCccEEEEeccC
Q 023903 250 PDSKFLRLQFSRN 262 (275)
Q Consensus 250 ~~~~~LrV~~Ar~ 262 (275)
.|+|.++..
T Consensus 83 ----~i~V~~a~~ 91 (107)
T 2lmi_A 83 ----YVEVYEINN 91 (107)
T ss_dssp ----CCCCEECCH
T ss_pred ----EEEEEECCH
Confidence 699998864
No 141
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=6.4e-17 Score=132.89 Aligned_cols=83 Identities=27% Similarity=0.428 Sum_probs=76.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
++++|||+|||.++|+++|+++|++||.|.+|+++.++.+ |+++|||||+|.++++|++|++.|+|..+.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~----- 73 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKT---GYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK----- 73 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTT---TEECSEEEEEESSHHHHHHHHHHHTTCEETTE-----
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCC---CccceEEEEEECCHHHHHHHHHhcCCCEeCCc-----
Confidence 4689999999999999999999999999999999987654 88999999999999999999999999999988
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
.|+|+|++...
T Consensus 74 ~l~v~~~~~~~ 84 (168)
T 1b7f_A 74 RLKVSYARPGG 84 (168)
T ss_dssp ECEEEECCCCS
T ss_pred EEEEEecCCCc
Confidence 79999998653
No 142
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=1e-17 Score=138.73 Aligned_cols=80 Identities=20% Similarity=0.328 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||+++||++|+++|++|| |++|+|+.++. |+++|||||+|.+.++|++|+ .+|+..|.++
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~----g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR----- 113 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD----GRVTGEADVEFATHEEAVAAM-SKDRANMQHR----- 113 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS----SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC----CCCceEEEEEeCCHHHHHHHH-hhCCCEECCE-----
Confidence 468999999999999999999999999 77999988763 899999999999999999999 7899999998
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
.|+|.++..+.
T Consensus 114 ~i~V~~a~~~~ 124 (139)
T 2hgn_A 114 YIELFLNSTTG 124 (139)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 68999988763
No 143
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=122.08 Aligned_cols=78 Identities=12% Similarity=0.230 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEE-EeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVR-LVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vr-l~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
.+++|||+|||+++|+++|+++|++||.|.+|+ ++.++.+ +.|||+|.+.++|++|++.|||..|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~-------~~afV~f~~~~~a~~Ai~~l~g~~~~g~---- 82 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET-------AVVNVTYSSKDQARQALDKLNGFQLENF---- 82 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS-------EEEEEEESSHHHHHHHHHHHTTCBCSSC----
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC-------CEEEEEECCHHHHHHHHHHhCCCEECCc----
Confidence 468999999999999999999999999999995 7766532 4599999999999999999999999998
Q ss_pred ccEEEEeccCC
Q 023903 253 KFLRLQFSRNP 263 (275)
Q Consensus 253 ~~LrV~~Ar~~ 263 (275)
.|+|+|++..
T Consensus 83 -~l~V~~a~~~ 92 (96)
T 2e44_A 83 -TLKVAYIPDE 92 (96)
T ss_dssp -BCEEEECCCC
T ss_pred -EEEEEEcCcc
Confidence 7999999875
No 144
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.69 E-value=4.8e-17 Score=125.28 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=68.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
+.-|||+||++.+||++|+++|.+||+|++++++. +||||||+|.++++|++|++.||+.++.++ +
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr-----~ 72 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---------NQGIALCKYTTREEANKAQMALNNCVLANT-----T 72 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTEEETTE-----E
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---------CCcEEEEEECCHHHHHHHHHHhcCCEECCc-----E
Confidence 57899999999999999999999999999999875 348999999999999999999999999999 7
Q ss_pred EEEEecc
Q 023903 255 LRLQFSR 261 (275)
Q Consensus 255 LrV~~Ar 261 (275)
|+|++|.
T Consensus 73 I~V~~A~ 79 (89)
T 2wbr_A 73 IFAESPS 79 (89)
T ss_dssp EEEECCC
T ss_pred EEEEECC
Confidence 9999984
No 145
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=7.4e-17 Score=137.34 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC--CCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE--DDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g--~~~~ 251 (275)
...+|||+||++++|+++|+++|++||.|++|+|+.++ ++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~-------~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~--- 114 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-------NQFQALLQYADPVSAQHAKLSLDGQNIYNACC--- 114 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS-------SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS---
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCc---
Confidence 34679999999999999999999999999999987543 35899999999999999999999999976 5
Q ss_pred CccEEEEeccCC
Q 023903 252 SKFLRLQFSRNP 263 (275)
Q Consensus 252 ~~~LrV~~Ar~~ 263 (275)
.|+|+|++..
T Consensus 115 --~L~V~~Ak~~ 124 (164)
T 1sjr_A 115 --TLRIDFSKLT 124 (164)
T ss_dssp --CEEEEECSSS
T ss_pred --EEEEEEecCC
Confidence 6999999875
No 146
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=1.4e-16 Score=130.79 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=68.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceE-EEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLIL-CFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGf-aFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
-.|||+||++.+|+++|+++|++||.|.+|+++.+. +|| |||+|.+.++|++|++.|||..|.+.. .+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~---~~ 97 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--------NQFQALLQYADPVSAQHAKLSLDGQNIYNAC---CT 97 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--------TEEEEEEEESCHHHHHHHHHHHTTCEEETTE---EE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHcCCCeecCCC---cE
Confidence 457799999999999999999999999999987542 367 999999999999999999999999831 17
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|+|+||+..
T Consensus 98 LrI~~ak~~ 106 (130)
T 3zzy_A 98 LRIDFSKLT 106 (130)
T ss_dssp EEEEECSCS
T ss_pred EEEEecCCC
Confidence 999999875
No 147
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.68 E-value=1.1e-16 Score=126.92 Aligned_cols=80 Identities=13% Similarity=0.202 Sum_probs=67.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||+++|+++|+++|++||.|+.|+|+.+ |||||+|.+.++|++|++.|||+.|+++.....
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 3689999999999999999999999999999998754 699999999999999999999999999843222
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|..++..
T Consensus 85 ~i~v~~~~~~ 94 (115)
T 3beg_B 85 YIRVKVDGPR 94 (115)
T ss_dssp BCEEEECC--
T ss_pred EEEeccCCCC
Confidence 3788777654
No 148
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=1e-17 Score=121.84 Aligned_cols=75 Identities=13% Similarity=0.316 Sum_probs=68.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEE
Q 023903 177 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 256 (275)
Q Consensus 177 tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~Lr 256 (275)
+|||+|||.++|+++|+++|++||.|.+++++.++.+ ++++|||||+|.+.++|++|++. ++..+.|+ .|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~-----~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT---NKRRGFCFITFKEEEPVKKIMEK-KYHNVGLS-----KCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCC---SSSCCCEEEECSSSHHHHHHHTT-SSCCBTTB-----CCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCcCCEEEEEECCHHHHHHHHHh-CCCeECCE-----EEE
Confidence 5999999999999999999999999999999887654 88999999999999999999984 99999998 588
Q ss_pred EEec
Q 023903 257 LQFS 260 (275)
Q Consensus 257 V~~A 260 (275)
|++|
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8875
No 149
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.68 E-value=1.2e-16 Score=131.73 Aligned_cols=78 Identities=26% Similarity=0.388 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||+++|+++|+++|++||.|++|+++.+ ++|||||+|.+.++|++|++.|||..|.++
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 138 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--------PPGFAFVEFEDPRDAADAVRELDGRTLCGC----- 138 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--------SCSEEEEEESSHHHHHHHHHHHSSSCSSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--------CCcEEEEEECCHHHHHHHHHHcCCCEECCe-----
Confidence 4689999999999999999999999999999999865 348999999999999999999999999998
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
+|+|+|++.+.
T Consensus 139 ~l~v~~a~~~~ 149 (150)
T 2i2y_A 139 RVRVELSNGEK 149 (150)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEcCCCC
Confidence 69999998753
No 150
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=120.04 Aligned_cols=77 Identities=18% Similarity=0.319 Sum_probs=67.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||+++|+++|+++|++||.|.+| +.++.+ ++ ||||+|.+.++|++|++ |||..|.++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~---g~---~afV~f~~~~~a~~ai~-l~g~~~~g~----- 72 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDK---GV---FAIVEMGDVGAREAVLS-QSQHSLGGH----- 72 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSS---CC---EEEEEESSHHHHHHHHT-CSCCEETTE-----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCC---Cc---EEEEEECCHHHHHHHHh-cCCeEECCE-----
Confidence 36899999999999999999999999999987 334432 43 99999999999999999 999999998
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
.|+|+++....
T Consensus 73 ~l~V~~a~~~~ 83 (94)
T 2e5g_A 73 RLRVRPREQKE 83 (94)
T ss_dssp ECCCBCSCCSC
T ss_pred EEEEEECCcCC
Confidence 79999987653
No 151
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.68 E-value=1.9e-16 Score=133.63 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=78.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
.+.++|||+|||.++++++|+++|++||.|..|+++.++.+ |+++|||||+|.+.++|++|++.|||..|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 184 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT---GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK---- 184 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTT---CSEEEEEEEEESSSSHHHHHHHHHTTCEETTE----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCC---CCcceEEEEEECCHHHHHHHHHHcCCCEECCE----
Confidence 45799999999999999999999999999999999988654 88999999999999999999999999999998
Q ss_pred ccEEEEeccCCCC
Q 023903 253 KFLRLQFSRNPGP 265 (275)
Q Consensus 253 ~~LrV~~Ar~~~~ 265 (275)
.|+|+|++.+..
T Consensus 185 -~l~v~~a~~~~~ 196 (198)
T 2yh0_A 185 -KLLVQRASVGAK 196 (198)
T ss_dssp -ECEEEESCCCCC
T ss_pred -EEEEEECCCCCC
Confidence 799999987643
No 152
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=1.9e-16 Score=133.37 Aligned_cols=82 Identities=10% Similarity=0.238 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||.++|+++|+++|++||.|..|+++.++.+ |+++|||||+|.+.++|++|+.. ++..|.|+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~----- 173 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS---GKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGH----- 173 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHC-SCCEETTE-----
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC---CCccceEEEEECCHHHHHHHHHh-CCcEECCE-----
Confidence 4589999999999999999999999999999999988654 88999999999999999999976 89999998
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
.|+|.|+....
T Consensus 174 ~i~v~~a~~k~ 184 (196)
T 1l3k_A 174 NCEVRKALSKQ 184 (196)
T ss_dssp ECEEEECC---
T ss_pred EEEEEecCChh
Confidence 79999998763
No 153
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.67 E-value=2.3e-16 Score=130.30 Aligned_cols=80 Identities=20% Similarity=0.356 Sum_probs=74.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||.++|+++|+++|++||.|..++++.++.+ |+++|||||+|.+.++|++|++.|||..+.|+
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 164 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT---GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK----- 164 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT---CSEEEEEEEEESSTTHHHHHHHHHTTCEETTE-----
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHcCCCEECCe-----
Confidence 3689999999999999999999999999999999988654 89999999999999999999999999999998
Q ss_pred cEEEEecc
Q 023903 254 FLRLQFSR 261 (275)
Q Consensus 254 ~LrV~~Ar 261 (275)
.|+|+||.
T Consensus 165 ~l~V~~As 172 (172)
T 2g4b_A 165 KLLVQRAS 172 (172)
T ss_dssp ECEEEECC
T ss_pred EEEEEeCC
Confidence 79999973
No 154
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=126.57 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=71.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
..+|||+|||+++|+++|+++|++| .|..|+|+.++. |+++|||||+|.+.++|++|+ .||+..|.++ .
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr-----~ 84 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV----GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR-----Y 84 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT----CCCCSEEEEECSSHHHHHHHH-HTTTEEETTE-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC----CCCCeEEEEEECCHHHHHHHH-hcCCCeECCe-----E
Confidence 5799999999999999999999999 899999998763 889999999999999999999 7999999998 6
Q ss_pred EEEEeccC
Q 023903 255 LRLQFSRN 262 (275)
Q Consensus 255 LrV~~Ar~ 262 (275)
|+|..+..
T Consensus 85 i~V~~a~~ 92 (109)
T 2dnn_A 85 VEVSPATE 92 (109)
T ss_dssp EEEEECCH
T ss_pred EEEEECCc
Confidence 99988764
No 155
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=2.3e-16 Score=118.88 Aligned_cols=74 Identities=24% Similarity=0.314 Sum_probs=68.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
+++|||+|||+++++++|+++|++| .|+++++. + ++|||||+|.+.++|++|++.|||..+.++ .
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~-------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~-----~ 69 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--R-------NKRTAFVTLLNGEQAQNAIQMFHQYSFRGK-----D 69 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--G-------GGTEEEECCSCHHHHHHHHHHHTTEEETTE-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--C-------CCcEEEEEECCHHHHHHHHHHhCCCeECCc-----E
Confidence 6899999999999999999999999 99999884 2 348999999999999999999999999998 7
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|+|+|+...
T Consensus 70 l~V~~a~~~ 78 (88)
T 1wg1_A 70 LIVQLQPTD 78 (88)
T ss_dssp EEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999999775
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.66 E-value=2.5e-16 Score=136.68 Aligned_cols=78 Identities=15% Similarity=0.288 Sum_probs=73.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||+|||+++|+++|+++|++||.|++|+|+.++ +.++|||||+|.+.++|++|++.|||..|.|+ .
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-----~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~-----~ 172 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR-----K 172 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----E
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-----CCCceEEEEEeCCHHHHHHHHHHhCCCEECCE-----E
Confidence 5789999999999999999999999999999999875 55789999999999999999999999999998 7
Q ss_pred EEEEeccC
Q 023903 255 LRLQFSRN 262 (275)
Q Consensus 255 LrV~~Ar~ 262 (275)
|+|.||+.
T Consensus 173 i~V~~a~~ 180 (213)
T 4f02_A 173 VFVGRFKS 180 (213)
T ss_dssp CEEEECCC
T ss_pred EEEEEcCC
Confidence 99999975
No 157
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=6e-17 Score=124.84 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.+++|||+|||.++|+++|+++|++||.|..|+++.++ + |+++|||||+|.+.++|++|++ ++..+.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~---g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~----- 76 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-T---GVSKGYGFVSFYNDVDVQKIVE--SQINFHGK----- 76 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-T---SCEEEEEEEEESSCCCHHHHTT--CCCEETTE-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-C---CCccceEEEEECCHHHHHHHHh--CCCeECCE-----
Confidence 35899999999999999999999999999999999887 3 8999999999999999999998 99999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|.++...
T Consensus 77 ~l~v~~a~~~ 86 (102)
T 2xs2_A 77 KLKLGPAIRK 86 (102)
T ss_dssp ECEEEEEEEC
T ss_pred EEEEEECCcC
Confidence 6899888643
No 158
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.8e-16 Score=127.48 Aligned_cols=80 Identities=18% Similarity=0.354 Sum_probs=73.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccE
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 255 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~L 255 (275)
++|||+|||.++|+++|+++|++||.|.+|+++.++. ++++|||||+|.+.++|++|++.|||..+.++ .|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-----~i 71 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN----NKNVNYAFVEYHQSHDANIALQTLNGKQIENN-----IV 71 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-----CCEEEEEEEESSHHHHHHHHHHHTTCEETTE-----EC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC----CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCC-----ee
Confidence 5899999999999999999999999999999998764 77899999999999999999999999999988 79
Q ss_pred EEEeccCCC
Q 023903 256 RLQFSRNPG 264 (275)
Q Consensus 256 rV~~Ar~~~ 264 (275)
+|.|+....
T Consensus 72 ~v~~~~~~~ 80 (166)
T 3md3_A 72 KINWAFQSQ 80 (166)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 999997654
No 159
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=127.64 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=67.8
Q ss_pred CCCCEEEE--cCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCee-----
Q 023903 173 DASSTLYV--EGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM----- 245 (275)
Q Consensus 173 ~~~~tLfV--gNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~----- 245 (275)
.++++||| +||++++||++|+++|++||.|..|.|+.+ ||||||+|.+.++|++|++.|||..+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 35789999 779999999999999999999999987643 37999999999999999999999988
Q ss_pred CCCCCCCccEEEEeccCC
Q 023903 246 DEDDPDSKFLRLQFSRNP 263 (275)
Q Consensus 246 ~g~~~~~~~LrV~~Ar~~ 263 (275)
.+. +|.|.|++.-
T Consensus 94 ~g~-----~l~v~~a~~~ 106 (114)
T 2cq2_A 94 QKI-----TLYLNFVEKV 106 (114)
T ss_dssp CEE-----ECEEEEESCC
T ss_pred CCc-----EEEEEecccC
Confidence 333 7999999763
No 160
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=1.3e-16 Score=129.98 Aligned_cols=78 Identities=22% Similarity=0.334 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEE--EEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYK--EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~--~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
..++|||+|||+++||++|+++|++| .|+ .|+|+.++. |+++|||||+|.++++|++|++. ++..|.++
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~----GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR--- 111 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE----GKITGEAFVQFASQELAEKALGK-HKERIGHR--- 111 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS----SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTB---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC----CCCceEEEEEECCHHHHHHHHHH-CCCEECCE---
Confidence 46899999999999999999999999 787 899987764 89999999999999999999984 77999888
Q ss_pred CccEEEEeccC
Q 023903 252 SKFLRLQFSRN 262 (275)
Q Consensus 252 ~~~LrV~~Ar~ 262 (275)
.|+|..+..
T Consensus 112 --~I~V~~a~~ 120 (126)
T 2hgm_A 112 --YIEVFKSSQ 120 (126)
T ss_dssp --CCCCEEECH
T ss_pred --EEEEEECCH
Confidence 688887753
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=8.7e-16 Score=126.08 Aligned_cols=81 Identities=22% Similarity=0.363 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++++++|+++|++||.|..++++.++.+ ++++|||||+|.+.++|.+|++.|||..+.+.. .
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~---~ 161 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT---GRPRGVAFVRYNKREEAQEAISALNNVIPEGGS---Q 161 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS---S
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCC---CCcceEEEEEECCHHHHHHHHHHhcCCEecCCC---e
Confidence 3689999999999999999999999999999999988754 889999999999999999999999999998832 2
Q ss_pred cEEEEec
Q 023903 254 FLRLQFS 260 (275)
Q Consensus 254 ~LrV~~A 260 (275)
+|+|+||
T Consensus 162 ~l~V~~A 168 (168)
T 1b7f_A 162 PLSVRLA 168 (168)
T ss_dssp CCEEEEC
T ss_pred EEEEEeC
Confidence 7999986
No 162
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=6e-16 Score=126.44 Aligned_cols=80 Identities=23% Similarity=0.447 Sum_probs=73.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||+|||.++++++|+++|++||.|..++++.++.+ |+++|||||+|.+.++|++|++.|||..+.++.. +
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~---~ 161 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVT---GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATE---P 161 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS---C
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCC---CCccceEEEEeCCHHHHHHHHHHhcCCccCCCcc---c
Confidence 589999999999999999999999999999999988654 8899999999999999999999999999999732 5
Q ss_pred EEEEec
Q 023903 255 LRLQFS 260 (275)
Q Consensus 255 LrV~~A 260 (275)
|+|+||
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 899986
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=3.3e-16 Score=131.96 Aligned_cols=82 Identities=12% Similarity=0.212 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
..+++|||+|||+++|+++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++. ++..+.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~---- 82 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT---KRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR---- 82 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHT-CSCEETTE----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCC---CCccceEEEEeCCHHHHHHHHhc-CCCEECCE----
Confidence 35789999999999999999999999999999999988765 88999999999999999999976 99999998
Q ss_pred ccEEEEeccCC
Q 023903 253 KFLRLQFSRNP 263 (275)
Q Consensus 253 ~~LrV~~Ar~~ 263 (275)
.|+|.++...
T Consensus 83 -~l~v~~~~~~ 92 (196)
T 1l3k_A 83 -VVEPKRAVSR 92 (196)
T ss_dssp -ECEEEECCC-
T ss_pred -EeeeecccCc
Confidence 7999998764
No 164
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=4.1e-16 Score=135.86 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=71.0
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 174 ASSTLYVEGLP-ADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP-~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
++++|||+||| +++|+++|+++|++||.|.+|+++.++ +|||||+|.+.++|++|++.|||..+.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~--------~g~afV~f~~~~~A~~Ai~~lng~~~~g~---- 70 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK--------PGAAMVEMADGYAVDRAITHLNNNFMFGQ---- 70 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS--------TTCEEEEESSHHHHHHHHHHHTTCEETTE----
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC--------CCEEEEEECCHHHHHHHHHHhCCCEECCc----
Confidence 36899999999 899999999999999999999998643 48999999999999999999999999998
Q ss_pred ccEEEEeccCC
Q 023903 253 KFLRLQFSRNP 263 (275)
Q Consensus 253 ~~LrV~~Ar~~ 263 (275)
.|+|.|++..
T Consensus 71 -~l~v~~s~~~ 80 (205)
T 3tyt_A 71 -KMNVCVSKQP 80 (205)
T ss_dssp -ECEEEECSCS
T ss_pred -eEEEEEccCC
Confidence 7999999864
No 165
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=5.1e-16 Score=128.03 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||.++|+++|+++|++||.|..++++.++. |+++|||||+|.+.++|.+|++.|||..+.+. ..+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~~ 167 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD----GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG--CSS 167 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT--CSS
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC----CCEEEEEEEEECCHHHHHHHHHHhcCCcccCC--CCC
Confidence 468999999999999999999999999999999998753 88999999999999999999999999888752 012
Q ss_pred cEEEEecc
Q 023903 254 FLRLQFSR 261 (275)
Q Consensus 254 ~LrV~~Ar 261 (275)
+|+|+||.
T Consensus 168 ~l~V~~ad 175 (175)
T 3nmr_A 168 PMVVKFAD 175 (175)
T ss_dssp CCEEEECC
T ss_pred CeEEEecC
Confidence 79999983
No 166
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.5e-17 Score=130.17 Aligned_cols=79 Identities=23% Similarity=0.277 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCE----EEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGY----KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 249 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i----~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~ 249 (275)
...+|||+|||+++|+++|+++|++||.| ..|+|+.++ + |+++|||||+|.+.++|++|++. |+..|.++
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~---gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR- 95 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-D---GRPTGDAFVLFACEEYAQNALRK-HKDLLGKR- 95 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-T---SCEEEEEEECCSSHHHHHHHHTT-TTEESSSC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-C---CCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe-
Confidence 46899999999999999999999999875 689998875 3 89999999999999999999986 99998887
Q ss_pred CCCccEEEEeccC
Q 023903 250 PDSKFLRLQFSRN 262 (275)
Q Consensus 250 ~~~~~LrV~~Ar~ 262 (275)
.|+|..+..
T Consensus 96 ----~i~V~~a~~ 104 (123)
T 2dha_A 96 ----YIELFRSTA 104 (123)
T ss_dssp ----EECCEEECH
T ss_pred ----EEEEEECCH
Confidence 688887753
No 167
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.63 E-value=7.9e-16 Score=131.50 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||.++|+++|+++|++||.|++|+++.++.+ |+++|||||+|.+.++|++|++.||+..|.++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~----- 98 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT---MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR----- 98 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC----CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C-----
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCC---CccCceEEEEeCCHHHHHHHHHHccCCeeCCe-----
Confidence 3589999999999999999999999999999999987654 88999999999999999999999999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|.++...
T Consensus 99 ~l~v~~~~~~ 108 (216)
T 2qfj_A 99 NIKVGRPSNI 108 (216)
T ss_dssp CCEEECCSCC
T ss_pred eEEEecCCCc
Confidence 6999987654
No 168
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=9.1e-16 Score=116.68 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=61.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+.++|||+|||+++||++|+++|++||.|++|+|+.+ +||||||+|.+.++|+ +|++..+..+. .
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--------srGfaFV~F~~~~~A~----~~~~~~~~~~g---~ 74 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--------FRAFAFVTFADDKVAQ----SLCGEDLIIKG---I 74 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--------CCSEEEEEESCHHHHH----HHTTCEEEETT---E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--------CCCEEEEEECCHHHHH----HHcCCCcccCC---E
Confidence 4689999999999999999999999999999998853 4589999999999987 36777765331 1
Q ss_pred cEEEEeccCCC
Q 023903 254 FLRLQFSRNPG 264 (275)
Q Consensus 254 ~LrV~~Ar~~~ 264 (275)
.|+|.+|+.+.
T Consensus 75 ~v~v~~a~~k~ 85 (89)
T 3d2w_A 75 SVHISNAEPKH 85 (89)
T ss_dssp EEEEEECC---
T ss_pred EEEEEEcCCCC
Confidence 68999987643
No 169
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=9.1e-16 Score=123.37 Aligned_cols=77 Identities=27% Similarity=0.421 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 172 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 172 p~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
+.++++|||+|| ++|+++|+++|++||.|.+|++.. ++|||||+|.+.++|++|++.|||..|.++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~---------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~--- 101 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---------PRNCAFVTYEKMESADQAVAELNGTQVESV--- 101 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCBCSSC---
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCEECCe---
Confidence 345799999996 699999999999999999999862 347999999999999999999999999988
Q ss_pred CccEEEEeccCCC
Q 023903 252 SKFLRLQFSRNPG 264 (275)
Q Consensus 252 ~~~LrV~~Ar~~~ 264 (275)
.|+|+|++.+.
T Consensus 102 --~l~V~~a~~~~ 112 (121)
T 2bz2_A 102 --QLKVNIARKQP 112 (121)
T ss_dssp --BCEEEECCSSC
T ss_pred --EEEEEEeCCCC
Confidence 79999998764
No 170
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.5e-16 Score=120.02 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=64.3
Q ss_pred CCE-EEEcCCCCCCCHHH----HHHHHcCC-CCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 175 SST-LYVEGLPADSTKRE----VAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 175 ~~t-LfVgNLP~~vteee----L~~lFs~f-G~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
+.| |||+|||+++++++ |+++|++| |.|.+| + + |||||+|.+.++|++|++.|||..+.++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------t---g---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------T---G---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------C---T---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------e---c---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 577 99999999999988 55899999 599988 1 3 7999999999999999999999999999
Q ss_pred CCCCccEEEEeccCC
Q 023903 249 DPDSKFLRLQFSRNP 263 (275)
Q Consensus 249 ~~~~~~LrV~~Ar~~ 263 (275)
+|+|+||+..
T Consensus 75 -----~i~v~~A~~~ 84 (96)
T 2diu_A 75 -----RIIVSFTPKN 84 (96)
T ss_dssp -----CCEEESSCCS
T ss_pred -----eEEEEecCCC
Confidence 7999999875
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-16 Score=117.87 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=63.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCee--CCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM--DEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~--~g~~~~ 251 (275)
++++|||+|||.++|+++|+++|++||.|++|+++.+ ++|||||+|.+.++|++| ++..+ .+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~~----~~~~~~~~g~--- 68 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--------FRAFAFVTFADDQIAQSL----CGEDLIIKGI--- 68 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--------CCSCCEEECSCHHHHHHT----TTCEEEETTE---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--------CCCEEEEEECCHHHHHHH----hcCCceeCCE---
Confidence 4699999999999999999999999999999998754 458999999999999754 55544 554
Q ss_pred CccEEEEeccCCCCCC
Q 023903 252 SKFLRLQFSRNPGPRS 267 (275)
Q Consensus 252 ~~~LrV~~Ar~~~~r~ 267 (275)
.|+|++++.+..+.
T Consensus 69 --~l~v~~a~~~~~~~ 82 (88)
T 1wf0_A 69 --SVHISNAEPKHNSN 82 (88)
T ss_dssp --EEEEECCCCCCCCC
T ss_pred --EEEEEecCCCCCCC
Confidence 79999998764443
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=3.5e-16 Score=128.58 Aligned_cols=80 Identities=11% Similarity=0.277 Sum_probs=74.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||+|||.++|+++|+++|++||.|..++++.++.+ |+++|||||+|.+.++|++|++ +++..+.|+ .
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~-----~ 157 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT---GQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR-----K 157 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSS---STTSEEEEEEESSHHHHHHHHH-CSEECSSSS-----C
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHh-CCCEEeCCe-----E
Confidence 579999999999999999999999999999999988654 8999999999999999999997 899999998 6
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|+|+||+.+
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999999764
No 173
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.4e-16 Score=122.54 Aligned_cols=71 Identities=24% Similarity=0.298 Sum_probs=61.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHh---CCCee
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL---QGYRM 245 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~L---nG~~~ 245 (275)
.+++|||+|||+++|+++|+++|++||.|. ++++.++.+...|+++|||||+|.+.++|++|++.| +|..+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 368999999999999999999999999999 887776654333689999999999999999999998 66544
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=1.8e-15 Score=124.69 Aligned_cols=85 Identities=15% Similarity=0.297 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCC--CcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGG--DPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G--~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
++++|||+|||+++|+++|+++|++||.|.+|+++.++.+ + +++|||||+|.+.++|++|++.||+..+.+..
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~-- 76 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQ---NPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGM-- 76 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSS---SSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTC--
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCC---CCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCC--
Confidence 3689999999999999999999999999999999988753 4 79999999999999999999999998886431
Q ss_pred CccEEEEeccCC
Q 023903 252 SKFLRLQFSRNP 263 (275)
Q Consensus 252 ~~~LrV~~Ar~~ 263 (275)
...+.+.+++..
T Consensus 77 ~~~~~~~~~~~~ 88 (175)
T 3nmr_A 77 HHPIQMKPADSE 88 (175)
T ss_dssp SSCCEEEECGGG
T ss_pred ccceEEcccccc
Confidence 126888887654
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=2e-15 Score=135.13 Aligned_cols=80 Identities=23% Similarity=0.370 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 249 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~----~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~ 249 (275)
++++|||+|||.++|+++|+ ++|++||.|++|+++.+ ++++|||||+|.+.++|++|++.|||..|.++
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~- 80 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFYDK- 80 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC------CCcceEEEEEECCHHHHHHHHHHhcCCeeCCc-
Confidence 47999999999999999976 89999999999998752 78899999999999999999999999999998
Q ss_pred CCCccEEEEeccCCC
Q 023903 250 PDSKFLRLQFSRNPG 264 (275)
Q Consensus 250 ~~~~~LrV~~Ar~~~ 264 (275)
.|+|+|++...
T Consensus 81 ----~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 ----PMRIQYAKTDS 91 (282)
T ss_pred ----EEEEEEeccCc
Confidence 79999997643
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=8.1e-16 Score=114.62 Aligned_cols=71 Identities=18% Similarity=0.309 Sum_probs=64.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCC----C-------CEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 242 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~f----G-------~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG 242 (275)
+.++|||+|||.++|+++|+++|++| | .|.++++..+ +|||||+|.+.++|++|+ .|||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---------kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---------KNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---------SSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---------CcEEEEEcCCHHHHHHHH-hcCC
Confidence 46899999999999999999999999 8 8999988754 379999999999999999 9999
Q ss_pred CeeCCCCCCCccEEEEe
Q 023903 243 YRMDEDDPDSKFLRLQF 259 (275)
Q Consensus 243 ~~~~g~~~~~~~LrV~~ 259 (275)
..+.++ .|+|+.
T Consensus 75 ~~~~g~-----~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQ-----SLKIRR 86 (87)
T ss_dssp CEETTE-----ECEEEC
T ss_pred CEECCe-----EEEEeC
Confidence 999998 688863
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=1e-14 Score=130.48 Aligned_cols=76 Identities=30% Similarity=0.635 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD-EDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~-g~~~~~ 252 (275)
++++|||+|||.++|+++|+++|++||.|++|+++.++ +|||||+|.+.++|++|++.|||+.|. ++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~g~---- 273 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--------HDIAFVEFDNEVQAGAARDALQGFKITQNN---- 273 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--------CcEEEEEeCCHHHHHHHHHHcCCcEeCCCC----
Confidence 47899999999999999999999999999999998654 379999999999999999999999999 76
Q ss_pred ccEEEEeccC
Q 023903 253 KFLRLQFSRN 262 (275)
Q Consensus 253 ~~LrV~~Ar~ 262 (275)
.|+|+|+|+
T Consensus 274 -~l~v~~akk 282 (282)
T 3pgw_A 274 -AMKISFAKK 282 (282)
T ss_pred -EEEEEEecC
Confidence 799999974
No 178
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=5.2e-15 Score=116.50 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 023903 173 DASSTLYVEGLPA-----DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 247 (275)
Q Consensus 173 ~~~~tLfVgNLP~-----~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g 247 (275)
.++++|+|.||.. +-++++|+++|++||.|.+|+|+.++.+ +++++|||||+|.+.++|.+|++.|||..|.|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~--~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGA--PDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSC--CTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCC--CCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 3579999999963 2378999999999999999999987532 26789999999999999999999999999999
Q ss_pred CCCCCccEEEEeccC
Q 023903 248 DDPDSKFLRLQFSRN 262 (275)
Q Consensus 248 ~~~~~~~LrV~~Ar~ 262 (275)
+ +|+|+|+..
T Consensus 84 r-----~i~v~~a~~ 93 (105)
T 2pe8_A 84 R-----VVKACFYNL 93 (105)
T ss_dssp E-----ECEEEECCH
T ss_pred c-----EEEEEEcCH
Confidence 8 799999864
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=4e-15 Score=123.55 Aligned_cols=77 Identities=22% Similarity=0.365 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
..++|||+|||.++|+++|+++|++||.|..+ .. + ++++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~-~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 164 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQ-D---GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR----- 164 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CS-S---SSCCSEEEEECSSHHHHHHHHHHHTEEEETTE-----
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cC-C---CCCceEEEEEECCHHHHHHHHHHhCCCEECCe-----
Confidence 46899999999999999999999999987665 22 2 78899999999999999999999999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|+||+.+
T Consensus 165 ~i~v~~a~~k 174 (175)
T 1fje_B 165 SVSLYYTGEK 174 (175)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEecCCC
Confidence 7999999753
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.58 E-value=2.3e-15 Score=123.62 Aligned_cols=78 Identities=15% Similarity=0.325 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
+++|||+|||.++|+++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++. +..+.|+ .
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~-----~ 72 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPAT---GRSRGFGFLSFEKPSSVDEVVKT--QHILDGK-----V 72 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTT---SSCCSCEEEEESSTHHHHHHHHS--CCEETTE-----E
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCC---CCccceEEEEEccHHHHHHHHhc--ccccCCe-----E
Confidence 689999999999999999999999999999999988654 89999999999999999999984 6678877 6
Q ss_pred EEEEeccC
Q 023903 255 LRLQFSRN 262 (275)
Q Consensus 255 LrV~~Ar~ 262 (275)
|+|.++..
T Consensus 73 i~v~~~~~ 80 (167)
T 2cjk_A 73 IDPKRAIP 80 (167)
T ss_dssp CCCEECCC
T ss_pred cccccccc
Confidence 77777654
No 181
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=3.6e-15 Score=130.66 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 174 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP~-~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
++++|||+|||. ++++++|+++|++||.|++|+++.++ +|||||+|.+.++|++|++.|||..|.++
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--------~g~afV~F~~~~~A~~Ai~~l~g~~~~g~---- 100 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------KENALVQMADGNQAQLAMSHLNGHKLHGK---- 100 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--------SCCEEEEESCHHHHHHHHHHHTTCBCSSS----
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--------CCEEEEEECCHHHHHHHHHHhCCCeECCe----
Confidence 579999999999 99999999999999999999998764 37999999999999999999999999998
Q ss_pred ccEEEEeccCC
Q 023903 253 KFLRLQFSRNP 263 (275)
Q Consensus 253 ~~LrV~~Ar~~ 263 (275)
.|+|+|++..
T Consensus 101 -~l~v~~a~~~ 110 (229)
T 2adc_A 101 -PIRITLSKHQ 110 (229)
T ss_dssp -BCEEECCSCC
T ss_pred -EEEEEEecCc
Confidence 7999999864
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.57 E-value=7.7e-15 Score=126.88 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=71.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||+|||+++|+++|+++|++||.|..|+|+.+.. ++++|||||+|.+.++|++|+..+ +..+.|+ .
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~----~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr-----~ 178 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVETP-GQKYKET-----D 178 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT----CCEEEEEEEEESSHHHHHHHHHCT-TCEETTE-----E
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC----CCcccEEEEEECCHHHHHHHHHhC-CCeECCE-----E
Confidence 58999999999999999999999999999999998763 889999999999999999999765 4589998 7
Q ss_pred EEEEeccCC
Q 023903 255 LRLQFSRNP 263 (275)
Q Consensus 255 LrV~~Ar~~ 263 (275)
|+|.|++.-
T Consensus 179 l~V~~~~~y 187 (193)
T 2voo_A 179 LLILFKDDY 187 (193)
T ss_dssp CEEEETTTC
T ss_pred EEEEEhHHH
Confidence 999998753
No 183
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.3e-15 Score=123.74 Aligned_cols=79 Identities=9% Similarity=0.124 Sum_probs=71.0
Q ss_pred CEEEEcCC----CCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCC----HHH----HHHHHH--HhC
Q 023903 176 STLYVEGL----PADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN----PAC----AATALS--ALQ 241 (275)
Q Consensus 176 ~tLfVgNL----P~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~----~~~----A~~Al~--~Ln 241 (275)
..|||+|| |+.++|++|+++|++||.|.+++++.|+.+ |.++|||||+|.+ +++ |.+|+. .||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~T---g~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNS---ALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTT---CCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 68999999 999999999999999999999999999987 9999999999996 333 788888 789
Q ss_pred CCeeCCCCCCCccEEEEeccC
Q 023903 242 GYRMDEDDPDSKFLRLQFSRN 262 (275)
Q Consensus 242 G~~~~g~~~~~~~LrV~~Ar~ 262 (275)
|..|+|+ .|+|.+.+.
T Consensus 80 g~~I~Gr-----~irV~ln~~ 95 (136)
T 2j8a_A 80 GCFIMGF-----KFEVILNKH 95 (136)
T ss_dssp CEEETTE-----EEEEEECCT
T ss_pred CCeecCc-----EEEEEECcc
Confidence 9999999 799998764
No 184
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=3.2e-15 Score=130.22 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=70.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCE--EEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGY--KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i--~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
++++|||+|||+++|+++|+++|++||.| ++++++.++ ++++|||||+|.+.++|.+|+..|||+.|.+.. .
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-----~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~-~ 195 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-----SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN-G 195 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-----SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS-S
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-----CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC-C
Confidence 46899999999999999999999999999 899988765 456699999999999999999999999999884 2
Q ss_pred CccEEEEec
Q 023903 252 SKFLRLQFS 260 (275)
Q Consensus 252 ~~~LrV~~A 260 (275)
+.++.|.|+
T Consensus 196 ~~p~~vk~~ 204 (205)
T 3tyt_A 196 PYPYTLKLC 204 (205)
T ss_dssp SSCEECEEE
T ss_pred CcceEEEec
Confidence 335666664
No 185
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.56 E-value=5.6e-15 Score=132.75 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCCC---------CHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCe
Q 023903 174 ASSTLYVEGLPADS---------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR 244 (275)
Q Consensus 174 ~~~tLfVgNLP~~v---------teeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~ 244 (275)
.+++|||+||+.++ +|++|+++|++||.|++|+|+.. ||||||+|.+.++|+.|+++|+|..
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 47899999999998 79999999999999999999854 3799999999999999999999999
Q ss_pred e------------CCCCCCCccEEEEeccCC
Q 023903 245 M------------DEDDPDSKFLRLQFSRNP 263 (275)
Q Consensus 245 ~------------~g~~~~~~~LrV~~Ar~~ 263 (275)
| .++ .|+|.||+..
T Consensus 204 l~~~~~~e~~~~~~gr-----~L~V~wA~~~ 229 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGT-----GLLVKWANED 229 (240)
T ss_dssp CCCTTSTTGGGGGGSC-----CCEEEECC--
T ss_pred EeccccccccccCCCC-----EEEEEEccCC
Confidence 9 566 6999999864
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.5e-14 Score=111.89 Aligned_cols=80 Identities=13% Similarity=0.155 Sum_probs=68.1
Q ss_pred CCCCCEEEEcCCCCCCC-----------HHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHh
Q 023903 172 PDASSTLYVEGLPADST-----------KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL 240 (275)
Q Consensus 172 p~~~~tLfVgNLP~~vt-----------eeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~L 240 (275)
+.++++|+|.||....+ +++|+++|++||.|++|.| .++ .++|||||+|.+.++|++|++.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~------~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR------HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT------CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC------CCCEEEEEEECCHHHHHHHHHHc
Confidence 34589999999954332 6899999999999999966 342 36799999999999999999999
Q ss_pred CCCeeCCCCCCCccEEEEeccCC
Q 023903 241 QGYRMDEDDPDSKFLRLQFSRNP 263 (275)
Q Consensus 241 nG~~~~g~~~~~~~LrV~~Ar~~ 263 (275)
||..|.++ +|+|+|+...
T Consensus 85 ng~~~~gr-----~l~v~~a~~~ 102 (112)
T 2dit_A 85 DGRWFGGR-----QITAQAWDGT 102 (112)
T ss_dssp TTCEETTE-----ECEEEECCSC
T ss_pred CCCEECCc-----EEEEEEeCCC
Confidence 99999998 7999998764
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.55 E-value=1.1e-14 Score=130.47 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 174 ASSTLYVEGLPADS-TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP~~v-teeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
..++|||+|||.++ |+++|+++|++||.|..++|+.+.. |+++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 254 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD----GQLKGFAVLEYETAEMAEEAQQQADGLSLGGS---- 254 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS----CCEEEEEEEECSSHHHHHHHHHHHTTCEETTE----
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC----CCcccEEEEEeCCHHHHHHHHHHhCCCccCCe----
Confidence 46899999999995 9999999999999999999998763 89999999999999999999999999999988
Q ss_pred ccEEEEeccCCCC
Q 023903 253 KFLRLQFSRNPGP 265 (275)
Q Consensus 253 ~~LrV~~Ar~~~~ 265 (275)
.|+|+|++....
T Consensus 255 -~l~v~~a~~~~~ 266 (284)
T 3smz_A 255 -HLRVSFCAPGPP 266 (284)
T ss_dssp -ECEEEECCSSSC
T ss_pred -EEEEEEecCCCc
Confidence 799999987543
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=2.6e-14 Score=121.31 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCC-CEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD-EDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG-~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~-g~~~~ 251 (275)
++++|||+|||.++|+++|+++|++|| .|.+|+++.+. +|||||+|.+.++|.+|++.|||..+. ++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~g~--- 187 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--------RKMALIQMGSVEEAVQALIDLHNHDLGENH--- 187 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--------SSCEEEECSSHHHHHHHHHHHTSSCCSSCC---
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--------CcEEEEEeCCHHHHHHHHHHhcCCccCCCC---
Confidence 479999999999999999999999999 99999997543 379999999999999999999999998 76
Q ss_pred CccEEEEeccCC
Q 023903 252 SKFLRLQFSRNP 263 (275)
Q Consensus 252 ~~~LrV~~Ar~~ 263 (275)
.|+|+|++.+
T Consensus 188 --~l~v~~a~~~ 197 (198)
T 1qm9_A 188 --HLRVSFSKST 197 (198)
T ss_dssp --SCCEEEECCC
T ss_pred --eEEEEeeccc
Confidence 6999999864
No 189
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.53 E-value=2.6e-14 Score=125.16 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCC-CEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC-CCCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD-EDDPD 251 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG-~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~-g~~~~ 251 (275)
++++|||+|||.++++++|+++|++|| .|..|+++.+. +|||||+|.+.++|++|++.|||..+. ++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~--- 218 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--------RKMALIQMGSVEEAVQALIDLHNHDLGENH--- 218 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS--------TTCEEEEESSHHHHHHHHHHHTTCBSSSSC---
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC--------CcEEEEEECCHHHHHHHHHHHCCCccCCCC---
Confidence 469999999999999999999999999 99999997532 379999999999999999999999998 76
Q ss_pred CccEEEEeccCC
Q 023903 252 SKFLRLQFSRNP 263 (275)
Q Consensus 252 ~~~LrV~~Ar~~ 263 (275)
.|+|+|++.+
T Consensus 219 --~l~v~~a~~~ 228 (229)
T 2adc_A 219 --HLRVSFSKST 228 (229)
T ss_dssp --BCEEEECSSC
T ss_pred --eEEEEEecCC
Confidence 7999999864
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=9.3e-15 Score=124.04 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=70.5
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 175 SSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 175 ~~tLfVgNLP~-~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
+++|||+|||. ++++++|+++|++||.|.+|+++.++ +|||||+|.+.++|++|++.|||..+.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--------~g~afV~f~~~~~a~~A~~~l~~~~~~g~----- 69 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------KENALVQMADGNQAQLAMSHLNGHKLHGK----- 69 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--------SSCCEEECTTTHHHHHHHHHHTTCCCSSC-----
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCeecCe-----
Confidence 58999999999 99999999999999999999998664 37999999999999999999999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|+|++..
T Consensus 70 ~l~v~~a~~~ 79 (198)
T 1qm9_A 70 PIRITLSKHQ 79 (198)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEecCC
Confidence 6999999864
No 191
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.53 E-value=1.3e-14 Score=130.44 Aligned_cols=82 Identities=12% Similarity=0.203 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 174 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 174 ~~~tLfVgNLP~~-vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
..++|||+|||.+ +|+++|+++|++||.|..|+++.+... +|.++|||||+|.+.++|.+|+ .|||..|.++
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~--tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~---- 281 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKE--HSFNNCCAFMVFENKDSAERAL-QMNRSLLGNR---- 281 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-----CCCEEEEEEESSHHHHHHHG-GGTTEEETTE----
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCc--CCCCceEEEEEeCCHHHHHHHH-HhcCCEECCc----
Confidence 4689999999999 999999999999999999999876540 1788999999999999999999 9999999998
Q ss_pred ccEEEEeccCC
Q 023903 253 KFLRLQFSRNP 263 (275)
Q Consensus 253 ~~LrV~~Ar~~ 263 (275)
.|+|+|++.+
T Consensus 282 -~i~V~~a~~k 291 (292)
T 2ghp_A 282 -EISVSLADKK 291 (292)
T ss_dssp -EEEEEECCCC
T ss_pred -EEEEEEecCC
Confidence 7999999864
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.52 E-value=4e-14 Score=126.77 Aligned_cols=82 Identities=24% Similarity=0.349 Sum_probs=76.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
.++|||+|||.++|+++|+++|++||.|..++++.++.+ |+++|||||+|.+.++|.+|++.|||..+.++ .
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-----~ 166 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERT---GQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR-----T 166 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-----E
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCC---CccceEEEEEECCHHHHHHHHHHhCCCEeCCc-----E
Confidence 479999999999999999999999999999999987654 89999999999999999999999999999988 7
Q ss_pred EEEEeccCCC
Q 023903 255 LRLQFSRNPG 264 (275)
Q Consensus 255 LrV~~Ar~~~ 264 (275)
|+|.|+....
T Consensus 167 i~v~~a~~~~ 176 (284)
T 3smz_A 167 LYVHWTDAGQ 176 (284)
T ss_dssp CEEEECCGGG
T ss_pred EEEEECCCCC
Confidence 9999997653
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.51 E-value=3.7e-15 Score=123.72 Aligned_cols=82 Identities=16% Similarity=0.301 Sum_probs=70.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCC
Q 023903 172 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 251 (275)
Q Consensus 172 p~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~ 251 (275)
+.+.++|||+|||.++|+++|+++|++||.+..+.+ .+..+ ++++|||||+|.+.++|++|+ .|||..+.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~-~~~~~---~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~--- 81 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAV-VDVRT---GTNRKFGYVDFESAEDLEKAL-ELTGLKVFGN--- 81 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCC-CEEEE---ETTTTEEEEEESSHHHHHHHH-HGGGEEETTE---
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE-EECCC---CccccEEEEEECCHHHHHHHH-hcCCCEeCCe---
Confidence 345799999999999999999999999988766323 23222 788999999999999999999 5999999998
Q ss_pred CccEEEEeccCC
Q 023903 252 SKFLRLQFSRNP 263 (275)
Q Consensus 252 ~~~LrV~~Ar~~ 263 (275)
.|+|++++..
T Consensus 82 --~l~v~~~~~~ 91 (175)
T 1fje_B 82 --EIKLEKPKGR 91 (175)
T ss_dssp --EEEEECCCCS
T ss_pred --EEEEecCCCc
Confidence 7999999864
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.49 E-value=4.7e-14 Score=126.04 Aligned_cols=76 Identities=24% Similarity=0.367 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCC
Q 023903 173 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 252 (275)
Q Consensus 173 ~~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~ 252 (275)
..+++|||+|||+++|+++|+++|++||.|..|++..+ +|||||+|.+.++|.+|+..|||..+.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---------kg~afV~f~~~~~A~~A~~~l~g~~i~g~---- 86 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---------RGFGFIRLESRTLAEIAKAELDGTILKSR---- 86 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---------TTEEEEECSSHHHHHHHHHHHTTCEETTE----
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---------CcEEEEEECCHHHHHHHHHHcCCcEECCc----
Confidence 34689999999999999999999999999999998643 37999999999999999999999999988
Q ss_pred ccEEEEeccC
Q 023903 253 KFLRLQFSRN 262 (275)
Q Consensus 253 ~~LrV~~Ar~ 262 (275)
.|+|.|+..
T Consensus 87 -~l~v~~a~~ 95 (261)
T 3sde_A 87 -PLRIRFATH 95 (261)
T ss_dssp -ECEEEECCC
T ss_pred -eeEeeeccc
Confidence 799999865
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.47 E-value=1.1e-13 Score=108.89 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=70.1
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 023903 174 ASSTLYVEGL--PADST--------KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 243 (275)
Q Consensus 174 ~~~tLfVgNL--P~~vt--------eeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~ 243 (275)
|+++|.+.|+ |.++. +++|+++|++||.|.+|+|+.++.++. ++++||+||+|.+.++|.+|++.|||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~-~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE-VPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC-CTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC-cCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4789999998 43443 468999999999999999987764321 467899999999999999999999999
Q ss_pred eeCCCCCCCccEEEEeccC
Q 023903 244 RMDEDDPDSKFLRLQFSRN 262 (275)
Q Consensus 244 ~~~g~~~~~~~LrV~~Ar~ 262 (275)
.|.|+ +|+|+|+..
T Consensus 83 ~f~GR-----~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANR-----VVVTKYCDP 96 (105)
T ss_dssp EETTE-----ECEEEEECH
T ss_pred EeCCC-----EEEEEEeCH
Confidence 99998 799999753
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=1.1e-13 Score=123.53 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=71.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCC-CeeC---CCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG-YRMD---EDDP 250 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG-~~~~---g~~~ 250 (275)
.++|||+|||.++|+++|+++|++||.|..|+++.+.. |+++|||||+|.+.++|.+|+..||+ ..+. ++
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r-- 169 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR----GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPR-- 169 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT----SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCC--
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC----CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCc--
Confidence 57999999999999999999999999999999998853 89999999999999999999999954 4444 44
Q ss_pred CCccEEEEeccCC
Q 023903 251 DSKFLRLQFSRNP 263 (275)
Q Consensus 251 ~~~~LrV~~Ar~~ 263 (275)
+|.|.++...
T Consensus 170 ---~i~v~~~~~~ 179 (261)
T 3sde_A 170 ---PVIVEPMEQF 179 (261)
T ss_dssp ---BCEEEECCCE
T ss_pred ---eEEEeecccc
Confidence 7999998764
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.46 E-value=9e-14 Score=124.92 Aligned_cols=80 Identities=16% Similarity=0.252 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCC-CEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 253 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG-~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~ 253 (275)
.++|||+|||.++|+++|+++|++|| .|..|+++.++. |.++|||||+|.+.++|++|++.|||..+.++
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 187 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF----NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGY----- 187 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETTE-----
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeCCc-----
Confidence 68999999999999999999999999 999999987764 77899999999999999999999999999998
Q ss_pred cEEEEeccCC
Q 023903 254 FLRLQFSRNP 263 (275)
Q Consensus 254 ~LrV~~Ar~~ 263 (275)
.|+|.|+...
T Consensus 188 ~l~v~~a~~~ 197 (292)
T 2ghp_A 188 TLVTKVSNPL 197 (292)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEECCCC
Confidence 7999998765
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.46 E-value=1.1e-13 Score=114.01 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=66.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCC----C-------CEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 243 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~f----G-------~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~ 243 (275)
+++|||+|||.++|+++|+++|++| | .|..+++.. ++|||||+|.++++|++|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~---------~~g~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------DKNFAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET---------TTTEEEEEESSHHHHHHHG-GGTTC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC---------CCCEEEEEeCCHHHHHHHH-HhCCc
Confidence 5899999999999999999999999 6 677776643 3489999999999999999 89999
Q ss_pred eeCCCCCCCccEEEEeccCCC
Q 023903 244 RMDEDDPDSKFLRLQFSRNPG 264 (275)
Q Consensus 244 ~~~g~~~~~~~LrV~~Ar~~~ 264 (275)
.+.++ .|+|++++...
T Consensus 74 ~~~g~-----~i~v~~~~~~~ 89 (172)
T 2g4b_A 74 IFQGQ-----SLKIRRPHDYQ 89 (172)
T ss_dssp EETTE-----ECEEECCSSCC
T ss_pred EecCc-----eeeecCCcccC
Confidence 99998 79999987643
No 199
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=5.4e-13 Score=104.37 Aligned_cols=76 Identities=12% Similarity=0.136 Sum_probs=62.2
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 023903 175 SSTLYVEGLP-------ADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 247 (275)
Q Consensus 175 ~~tLfVgNLP-------~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g 247 (275)
.++|-|.... .++|+++|+++|++||.|++|+|+ ++++|||||+|.+.++|++|++.+++ +.+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--------~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g 79 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--------SKKPGTAVVEFATVKAAELAVQNEVG--LVD 79 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--------SSSSSEEEEEESCHHHHHHHHHTCCB--CSS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--------cCCCCEEEEEECCHHHHHHHHHhcCC--CCC
Confidence 3566666543 468999999999999999999987 24568999999999999999998655 456
Q ss_pred CCCCCccEEEEeccCCCC
Q 023903 248 DDPDSKFLRLQFSRNPGP 265 (275)
Q Consensus 248 ~~~~~~~LrV~~Ar~~~~ 265 (275)
+ +|+|+|++.+..
T Consensus 80 ~-----~l~V~~a~~~~~ 92 (100)
T 2d9o_A 80 N-----PLKISWLEGQPQ 92 (100)
T ss_dssp S-----BCEEECSSCCCC
T ss_pred C-----eEEEEEccCCCC
Confidence 6 799999987643
No 200
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.44 E-value=2e-13 Score=128.56 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=67.8
Q ss_pred CCCCCCCEEEEcC--CCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 023903 170 LPPDASSTLYVEG--LPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 247 (275)
Q Consensus 170 ~pp~~~~tLfVgN--LP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g 247 (275)
.+..++++|||+| |+..+||++|+++|++||.|++|++.. .||||||+|.+.++|++|+++|||..+.+
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---------NKPYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---------TCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 3345689999999 578999999999999999999987753 24799999999999999999999999953
Q ss_pred CCCCCccEEEEecc
Q 023903 248 DDPDSKFLRLQFSR 261 (275)
Q Consensus 248 ~~~~~~~LrV~~Ar 261 (275)
..-.+.+|.|.|+.
T Consensus 84 ~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 84 DLGQKITLYLNFVE 97 (345)
T ss_dssp TTSCEEECEEEECS
T ss_pred ccCCceEEEEEEee
Confidence 31112257888875
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=3.7e-14 Score=111.23 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=63.8
Q ss_pred EEcCCCCCCCHHHHHHHH------------cCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 023903 179 YVEGLPADSTKREVAHIF------------RPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 246 (275)
Q Consensus 179 fVgNLP~~vteeeL~~lF------------s~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~ 246 (275)
.+.+|++++++++|+++| ++||.|.+|+|+.++. ++++|||||+|.+.++|.+|++.|||..+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~----~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG----DHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS----SSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC----CCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 356788888888877766 9999999999987653 789999999999999999999999999999
Q ss_pred CCCCCCccEEEEec
Q 023903 247 EDDPDSKFLRLQFS 260 (275)
Q Consensus 247 g~~~~~~~LrV~~A 260 (275)
|+ +|+|+|+
T Consensus 95 Gr-----~i~v~~s 103 (104)
T 1jmt_A 95 GQ-----PIHAELS 103 (104)
T ss_dssp TE-----ECCEEEC
T ss_pred CE-----EEEEEEc
Confidence 98 7999986
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.43 E-value=1.9e-13 Score=115.11 Aligned_cols=74 Identities=18% Similarity=0.299 Sum_probs=65.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCC----C-------CEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 243 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~f----G-------~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~ 243 (275)
+++|||+|||+++|+++|+++|++| | .|..+++. +++|||||+|.+.++|++|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---------~~~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---------TTTTEEEEEESCSHHHHHHG-GGTTE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---------CCCCEEEEEeCCHHHHHHHH-HhcCC
Confidence 6899999999999999999999999 4 55655553 34589999999999999999 89999
Q ss_pred eeCCCCCCCccEEEEeccCC
Q 023903 244 RMDEDDPDSKFLRLQFSRNP 263 (275)
Q Consensus 244 ~~~g~~~~~~~LrV~~Ar~~ 263 (275)
.|.++ .|+|++++..
T Consensus 74 ~~~g~-----~i~v~~~~~~ 88 (198)
T 2yh0_A 74 IFQGQ-----SLKIRRPHDY 88 (198)
T ss_dssp EETTE-----EEEEECCCCC
T ss_pred EEcCc-----eEEEeCCCCC
Confidence 99998 7999998764
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=6.2e-13 Score=106.94 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCC--C---CCHHHHHHHHcCCCCEEEEEEeecCcc-cCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 023903 174 ASSTLYVEGLPA--D---STKREVAHIFRPFVGYKEVRLVIKESK-LRGGDPLILCFVDFENPACAATALSALQGYRMDE 247 (275)
Q Consensus 174 ~~~tLfVgNLP~--~---vteeeL~~lFs~fG~i~~vrl~~~~~~-~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g 247 (275)
++++|+|.|+-. + --+++|++.|++||.|.+|+|+.++.+ ...++++||+||+|.+.++|.+|++.|||..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 479999999842 2 237899999999999999999987642 1125688999999999999999999999999999
Q ss_pred CCCCCccEEEEeccC
Q 023903 248 DDPDSKFLRLQFSRN 262 (275)
Q Consensus 248 ~~~~~~~LrV~~Ar~ 262 (275)
+ +|+|+|+..
T Consensus 99 R-----~i~v~~~~~ 108 (118)
T 3ue2_A 99 R-----KVVAEVYDQ 108 (118)
T ss_dssp E-----ECEEEEECH
T ss_pred c-----EEEEEEcCh
Confidence 8 799999753
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.27 E-value=1.4e-11 Score=98.41 Aligned_cols=79 Identities=15% Similarity=0.157 Sum_probs=66.0
Q ss_pred CCCCCCEEEEcCCCCCC----------CHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHh
Q 023903 171 PPDASSTLYVEGLPADS----------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL 240 (275)
Q Consensus 171 pp~~~~tLfVgNLP~~v----------teeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~L 240 (275)
+|.++++|.+.|+=..- -+++|++.|++||.|.+|+|..+. ++||+||+|.+.++|.+|++.|
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-------~~G~~fV~f~~~e~A~~Ai~~l 75 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-------AQGNVYVKCPSIAAAIAAVNAL 75 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-------TTCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-------CcEEEEEEECCHHHHHHHHHHh
Confidence 44568899999973221 145889999999999999886442 3699999999999999999999
Q ss_pred CCCeeCCCCCCCccEEEEecc
Q 023903 241 QGYRMDEDDPDSKFLRLQFSR 261 (275)
Q Consensus 241 nG~~~~g~~~~~~~LrV~~Ar 261 (275)
||..|.|+ .|+|+|+.
T Consensus 76 nG~~f~GR-----~i~v~~~~ 91 (114)
T 3s6e_A 76 HGRWFAGK-----MITAAYVP 91 (114)
T ss_dssp TTCEETTE-----ECEEEEEC
T ss_pred CCCEECCE-----EEEEEEEc
Confidence 99999998 79999985
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=3.2e-10 Score=87.38 Aligned_cols=74 Identities=22% Similarity=0.300 Sum_probs=62.1
Q ss_pred CEEEEcCCCC----CCCH----HHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 023903 176 STLYVEGLPA----DSTK----REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 247 (275)
Q Consensus 176 ~tLfVgNLP~----~vte----eeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g 247 (275)
.||+|.-++. +.-. .+|.+.|++||.|+.++++.++ +||+|.+.++|.+|++ |||..+.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 6888877662 2223 4789999999999999999763 8999999999999998 99999999
Q ss_pred CCCCCccEEEEeccCCCCC
Q 023903 248 DDPDSKFLRLQFSRNPGPR 266 (275)
Q Consensus 248 ~~~~~~~LrV~~Ar~~~~r 266 (275)
+ .|+|++++.....
T Consensus 76 r-----~LkV~lkt~dW~~ 89 (91)
T 2dnr_A 76 R-----TITIALKSPSGPS 89 (91)
T ss_dssp E-----EEEEEECCCSSCS
T ss_pred e-----EEEEEeCCCCccc
Confidence 9 7999999876544
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=9.3e-10 Score=89.09 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=62.7
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCC-HHHHHHHHHHhC--CCeeCCCC
Q 023903 174 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN-PACAATALSALQ--GYRMDEDD 249 (275)
Q Consensus 174 ~~~tLfVgNLP~~-vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~-~~~A~~Al~~Ln--G~~~~g~~ 249 (275)
....|||+||+.+ +++++|+++|++||.|..|.++.+.. .|||.|.+ +.+|++|+.+|+ +..|.+.
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~- 86 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---------EGIILFKEKAKEALGKAKDANNGNLQLRNK- 86 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS-
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---------EEEEEECCChHHHHHHHHHhhcCCcEEeCc-
Confidence 3589999999999 99999999999999999999987764 69999999 899999999995 6777775
Q ss_pred CCCccEEEEe
Q 023903 250 PDSKFLRLQF 259 (275)
Q Consensus 250 ~~~~~LrV~~ 259 (275)
.++++.
T Consensus 87 ----~~~~ev 92 (121)
T 1owx_A 87 ----EVTWEV 92 (121)
T ss_dssp ----SEEEEE
T ss_pred ----EEEEEE
Confidence 466654
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.82 E-value=1.1e-08 Score=88.75 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=60.6
Q ss_pred CCHHHHHHHHcCCCCEEEEEEeecCcc-cCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccEEEEecc
Q 023903 187 STKREVAHIFRPFVGYKEVRLVIKESK-LRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 261 (275)
Q Consensus 187 vteeeL~~lFs~fG~i~~vrl~~~~~~-~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~LrV~~Ar 261 (275)
-.+++|++.|++||.|.+++|+.+... ...++++|++||+|.+.++|.+|++.|||..+.|+ +|+++|+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr-----~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR-----KVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS-----BCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe-----EEEEEEcC
Confidence 457799999999999999999865432 12358999999999999999999999999999999 79999974
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=4.2e-09 Score=81.69 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=58.2
Q ss_pred CEEEEcCCCCC------CCH---HHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeC
Q 023903 176 STLYVEGLPAD------STK---REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 246 (275)
Q Consensus 176 ~tLfVgNLP~~------vte---eeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~ 246 (275)
.||+|.-++.+ ..+ .+|.+.|++||.|+.++++.++ +||+|.+.++|.+|++ |||+.+.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 78999888743 222 3688999999999999999763 8999999999999998 9999999
Q ss_pred CCCCCCccEEEEec
Q 023903 247 EDDPDSKFLRLQFS 260 (275)
Q Consensus 247 g~~~~~~~LrV~~A 260 (275)
++ .|+|++-
T Consensus 84 Gr-----~L~V~~k 92 (95)
T 1ufw_A 84 GR-----AVKISGP 92 (95)
T ss_dssp TE-----EEEEECC
T ss_pred Ce-----EEEEecc
Confidence 99 7999874
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.3e-06 Score=69.51 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=64.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCC-----CCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPF-----VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 249 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~f-----G~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~ 249 (275)
.++|-+=|||..+++..|+.|.+++ |.|++|.++.+. +-|+|+|.|...|.+|.-+|+|..|.++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH---------~GAivef~d~~~AgKasLaL~G~ef~gr- 90 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF---------NGAIIIFRDSKFAAKMLMILNGSQFQGK- 90 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT---------TEEEEECSCHHHHHHHHHHHSSEEETTE-
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC---------CceEEEEccchhhHHHHhhcCCeeecCe-
Confidence 5789999999999999999999999 999999999886 3599999999999999999999999988
Q ss_pred CCCccEEEE
Q 023903 250 PDSKFLRLQ 258 (275)
Q Consensus 250 ~~~~~LrV~ 258 (275)
.|++.
T Consensus 91 ----~Lr~g 95 (117)
T 2l9w_A 91 ----VIRSG 95 (117)
T ss_dssp ----EEEEE
T ss_pred ----EEEec
Confidence 68874
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=1.8e-05 Score=62.14 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=62.8
Q ss_pred CEEEEcCCCCCC-C----HHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 176 STLYVEGLPADS-T----KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 176 ~tLfVgNLP~~v-t----eeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
++|+|.||+.++ + ++.+++||.+|+++......+.-. -..|.|.++++|.+|...||+..|.|+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR---------Rirv~F~~~~~A~~AR~~Lh~~~f~g~-- 74 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK---------RVRINFSNPLSAADARLRLHKTEFLGK-- 74 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT---------EEEEECSSTTHHHHHHHTSTTSEETTE--
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce---------EEEEEeCChHHHHHHHHHhccceecCc--
Confidence 799999999865 2 357899999999998887776543 368999999999999999999999998
Q ss_pred CCccEEEEeccC
Q 023903 251 DSKFLRLQFSRN 262 (275)
Q Consensus 251 ~~~~LrV~~Ar~ 262 (275)
.|+|-|+..
T Consensus 75 ---~~r~YFgq~ 83 (104)
T 1wey_A 75 ---EMKLYFAQT 83 (104)
T ss_dssp ---ECEEECCCC
T ss_pred ---eeEEEecCC
Confidence 699999874
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.76 E-value=0.00013 Score=56.69 Aligned_cols=55 Identities=16% Similarity=0.336 Sum_probs=47.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 241 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~Ln 241 (275)
...++| +.|.+....||.++|++||+| .|+.+.+. -|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT----------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 466777 999999999999999999965 47777654 69999999999999998764
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.70 E-value=0.00042 Score=53.09 Aligned_cols=87 Identities=14% Similarity=0.223 Sum_probs=68.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCccE
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 255 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~L 255 (275)
.+|.|.+||+.+||+++.+.++....+.....+..+.+.. -..-.-|+|.|.+.+++..-.+.++|+.|.+.+-...+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~-~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLY-PHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSST-TCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCC-CCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 4789999999999999999999998887777766554321 123357999999999999999999999998775433345
Q ss_pred EEEeccCC
Q 023903 256 RLQFSRNP 263 (275)
Q Consensus 256 rV~~Ar~~ 263 (275)
.|+||-.+
T Consensus 81 ~VE~AP~q 88 (91)
T 1uw4_A 81 IVEFAPFQ 88 (91)
T ss_dssp EEEECSSC
T ss_pred EEEEcCCC
Confidence 68888554
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.03 E-value=0.00088 Score=52.15 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=46.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 241 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~Ln 241 (275)
..|+| +.|.+....||.++|++||+ ..|+.+.+. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT----------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT----------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 44556 99999999999999999994 458887654 69999999999999998774
No 214
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.96 E-value=0.002 Score=49.89 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=63.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCCCCcc
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 254 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~~~~~ 254 (275)
+-+|.|..||+.+||+++.+.++..-.+.....+..+.+.. -..-.-|+|.|.+.++...-.+.++|+.|.+.+-..-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~-~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLY-PHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSC-CSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCC-CCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 46799999999999999998888876654433333332211 11224689999999999999999999999877544445
Q ss_pred EEEEeccC
Q 023903 255 LRLQFSRN 262 (275)
Q Consensus 255 LrV~~Ar~ 262 (275)
-.|+||-.
T Consensus 88 a~VE~APy 95 (97)
T 2l08_A 88 AVVEFAPF 95 (97)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 66888754
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.64 E-value=0.0056 Score=47.88 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=52.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCC-----CCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPF-----VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 249 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~f-----G~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~ 249 (275)
.++|.|.|||.+++++.|.-.|++- |.|..+.... .-|+|+|.+.+.|++.++. .-+.|.+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----------~~AvItF~d~~va~rVL~k-~~H~L~~~- 74 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----------CGGVLTFREPADAERVLAQ-ADHELHGA- 74 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----------TEEEEEESSHHHHHHHHTC-SCCBSSSS-
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----------CcEEEEEcChHHHHHHhcC-CcceecCe-
Confidence 5899999999999999999999972 5677777654 1589999999999998853 35666665
Q ss_pred CCCccEEEE
Q 023903 250 PDSKFLRLQ 258 (275)
Q Consensus 250 ~~~~~LrV~ 258 (275)
+|.|.
T Consensus 75 ----~LsV~ 79 (104)
T 2dhx_A 75 ----QLSLR 79 (104)
T ss_dssp ----BCEEE
T ss_pred ----EEEEE
Confidence 56664
No 216
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.92 E-value=0.0054 Score=49.55 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=28.7
Q ss_pred EEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 023903 204 EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 243 (275)
Q Consensus 204 ~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~ 243 (275)
.++|+.+. .+++|||||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~-----~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG-----KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC-----SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC-----ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 45666664 468899999999999999999988753
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.80 E-value=0.031 Score=44.72 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=51.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCC
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 248 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~ 248 (275)
..+.|-|-+.|+.. -..|.+.|++||.|++...... . .+-.|.|.++.+|++||. .||..+.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~-------~--NWihI~Y~s~~~A~rAL~-kNG~ii~g~ 86 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT-------G--NWMHIRYQSKLQARKALS-KDGRIFGES 86 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS-------S--SEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC-------C--CeEEEEeCCHHHHHHHHH-hCCeEecCC
Confidence 35778899999885 5566678999999998876211 1 388999999999999995 599999865
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.32 E-value=0.0069 Score=58.84 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=42.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHH
Q 023903 174 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALS 238 (275)
Q Consensus 174 ~~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~ 238 (275)
+.++|||. .|.++++.+|.+.|++||.|..+.+-.++ | -|+.|||.+.+++.+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----S---EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----C---eEEEEEeCCHHHHHHHHh
Confidence 45789997 79999999999999999999999887654 3 499999999998886653
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.51 E-value=0.012 Score=47.22 Aligned_cols=40 Identities=8% Similarity=-0.033 Sum_probs=36.0
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHh-CCCeeCCCCCCCccEEEEeccC
Q 023903 217 GDPLILCFVDFENPACAATALSAL-QGYRMDEDDPDSKFLRLQFSRN 262 (275)
Q Consensus 217 G~skGfaFVeF~~~~~A~~Al~~L-nG~~~~g~~~~~~~LrV~~Ar~ 262 (275)
.+.+|+++|+|.+.++|++|++.| ||..++|. |++.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~------~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGE------WTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCCE------EEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCCc------eecccccC
Confidence 567899999999999999999999 99999983 89999875
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.84 E-value=0.23 Score=48.53 Aligned_cols=55 Identities=16% Similarity=0.333 Sum_probs=46.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 241 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~Ln 241 (275)
...|+|+ +|..+...+|.++|+.||. .+|+.+.+. .|||.|.+.+.|..+++++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt----------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT----------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS----------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC----------eEEEEECCHHHHHHHHHHHH
Confidence 3677887 8888999999999999995 456666442 79999999999999999885
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=87.80 E-value=0.45 Score=38.55 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=46.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHcCCCCEEEE-EEee---------c-CcccCCC-CcceEEEEEeCCHHHHHHHHHHhCC
Q 023903 175 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVI---------K-ESKLRGG-DPLILCFVDFENPACAATALSALQG 242 (275)
Q Consensus 175 ~~tLfVgNLP~~vteeeL~~lFs~fG~i~~v-rl~~---------~-~~~~~~G-~skGfaFVeF~~~~~A~~Al~~LnG 242 (275)
...|.|-+.|++.+.. +.+.|++||.|.+- .+.. . ..+-+ . ....+-.|.|+++.+|.+||. .||
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP-~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVP-IFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCC-CCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccC-ccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 4567777888775544 55689999999872 1110 0 00000 0 012477999999999999995 699
Q ss_pred CeeCCC
Q 023903 243 YRMDED 248 (275)
Q Consensus 243 ~~~~g~ 248 (275)
..|.|.
T Consensus 84 ~ii~G~ 89 (132)
T 3p3d_A 84 AVFNGV 89 (132)
T ss_dssp CEETTE
T ss_pred eEeCcE
Confidence 999886
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=62.05 E-value=14 Score=25.80 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=40.9
Q ss_pred EEEEcC-CCCCCCHHHHHHHHcCCCCE-----EEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCeeCCCCC
Q 023903 177 TLYVEG-LPADSTKREVAHIFRPFVGY-----KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 250 (275)
Q Consensus 177 tLfVgN-LP~~vteeeL~~lFs~fG~i-----~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~~g~~~ 250 (275)
+|||.. --..+...+|..++..-+++ -.|++.. .|+||+-.. +.|..+++.|++..+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-----------~~s~v~v~~-~~~~~~~~~l~~~~i~g~-- 67 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD-----------NASYVEILN-GKGPHVLKVMKNTTVKGK-- 67 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS-----------SCEEEEECT-TCHHHHHHHHTTCCC-----
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC-----------CcEEEEECH-HHHHHHHHHhccccCcCc--
Confidence 566632 22346666777777655554 3455532 278998876 567889999999999988
Q ss_pred CCccEEEEecc
Q 023903 251 DSKFLRLQFSR 261 (275)
Q Consensus 251 ~~~~LrV~~Ar 261 (275)
.++|+.++
T Consensus 68 ---~~~v~~~~ 75 (76)
T 2g0c_A 68 ---QLKVNKAN 75 (76)
T ss_dssp ---CCCEEECC
T ss_pred ---eEEEEECC
Confidence 57777664
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=56.08 E-value=2.4 Score=32.12 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=0.0
Q ss_pred CCEEEEcCCCCCCCHHH
Q 023903 175 SSTLYVEGLPADSTKRE 191 (275)
Q Consensus 175 ~~tLfVgNLP~~vteee 191 (275)
.++|||+|||+++|++.
T Consensus 97 ~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 97 FTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -----------------
T ss_pred CCceEeCCCCCCccccc
Confidence 46799999999999874
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=30.82 E-value=1.1e+02 Score=25.41 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=35.5
Q ss_pred EEEEcCCCCC---------CCHHHHHHHH--cCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHH
Q 023903 177 TLYVEGLPAD---------STKREVAHIF--RPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAA 234 (275)
Q Consensus 177 tLfVgNLP~~---------vteeeL~~lF--s~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~ 234 (275)
+..|-|+|.. .+..+|++.| +.|.+++ |+.+..+. .+.|++.|+|.+.-..-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~-----Gh~g~aIv~F~~dw~Gf 76 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL-----GHSGTAIVEFNKDWNGL 76 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS-----BEEEEEEEECCSSHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC-----CCceeEEEEecCChHHH
Confidence 5667788862 3346899977 9998876 44444542 34589999999854443
No 225
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=25.12 E-value=1.4e+02 Score=19.55 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=42.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHcCCCCEEEEEEeecCcccCCCCcceEEEEEeCCHHHHHHHHHHhCCCee
Q 023903 176 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 245 (275)
Q Consensus 176 ~tLfVgNLP~~vteeeL~~lFs~fG~i~~vrl~~~~~~~~~G~skGfaFVeF~~~~~A~~Al~~LnG~~~ 245 (275)
.+|.|.++.=.-....|...+.. .+|..+.+-... +-+.|+|.+.+...++++. -|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~---------~~~~v~~~~~~~i~~~i~~-~Gy~~ 65 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE---------AVVAGNKEDVDKYIKAVEA-AGYQA 65 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE---------EEEEEEGGGHHHHHHHHHH-TTCEE
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC---------CEEEEEECCHHHHHHHHHH-cCCce
Confidence 56889998877778889999998 889888775432 3578888866666667664 35543
Done!