BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023904
         (275 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
 pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
          Length = 231

 Score = 28.1 bits (61), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 32  NLTWNPPESDGRPSLNVRRREQQVAVASTDCAKKAFQDQDVAK---EVLKTRGAIHDGS 87
           NL +NPP   G   +      QQ        A +  Q +DVAK   E+ K+RG +H  S
Sbjct: 137 NLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKPVIELYKSRGVLHQFS 195


>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
 pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
 pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
           Complex With Diguanosine Pentaphosphate
 pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
           Complex With Diguanosine Pentaphosphate
          Length = 246

 Score = 28.1 bits (61), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 32  NLTWNPPESDGRPSLNVRRREQQVAVASTDCAKKAFQDQDVAK---EVLKTRGAIHDGS 87
           NL +NPP   G   +      QQ        A +  Q +DVAK   E+ K+RG +H  S
Sbjct: 159 NLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFS 217


>pdb|1M11|1 Chain 1, Structural Model Of Human Decay-accelerating Factor Bound
           To Echovirus 7 From Cryo-electron Microscopy
          Length = 278

 Score = 27.3 bits (59), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 181 SATSNSILDKAIDSEDAQH------KDFLRLEHIEGYHELSAKT-KIFFSTAVAKWDADF 233
           S  SNS    A+ + +  H       D ++  H++ YH  S  T + F S +   +  ++
Sbjct: 20  SGPSNSTSIPALTAVETGHTSQVEPSDTMQTRHVKNYHSRSESTVENFLSRSACVYIEEY 79

Query: 234 YVKVDDDVH 242
           Y K  D+V+
Sbjct: 80  YTKDQDNVN 88


>pdb|3IYP|A Chain A, The Interaction Of Decay-Accelerating Factor With
           Echovirus 7
 pdb|2X5I|A Chain A, Crystal Structure Echovirus 7
          Length = 292

 Score = 27.3 bits (59), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 181 SATSNSILDKAIDSEDAQH------KDFLRLEHIEGYHELSAKT-KIFFSTAVAKWDADF 233
           S  SNS    A+ + +  H       D ++  H++ YH  S  T + F S +   +  ++
Sbjct: 20  SGPSNSTSIPALTAVETGHTSQVEPSDTMQTRHVKNYHSRSESTVENFLSRSACVYIEEY 79

Query: 234 YVKVDDDVH 242
           Y K  D+V+
Sbjct: 80  YTKDQDNVN 88


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,023,331
Number of Sequences: 62578
Number of extensions: 244710
Number of successful extensions: 593
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 4
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)