Query 023904
Match_columns 275
No_of_seqs 288 out of 1171
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:30:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 1.2E-70 2.7E-75 526.3 24.5 259 6-274 11-280 (408)
2 KOG2288 Galactosyltransferases 100.0 4.1E-41 8.9E-46 304.4 13.8 145 130-275 8-153 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 1.1E-32 2.4E-37 277.5 17.2 138 129-273 381-520 (636)
4 KOG2287 Galactosyltransferases 100.0 2.5E-31 5.3E-36 252.9 16.1 136 132-273 94-233 (349)
5 PF13334 DUF4094: Domain of un 100.0 1.2E-31 2.6E-36 212.2 6.5 91 12-111 1-95 (95)
6 PF01762 Galactosyl_T: Galacto 100.0 3.5E-30 7.7E-35 224.5 11.3 122 147-273 1-126 (195)
7 PTZ00210 UDP-GlcNAc-dependent 99.9 3.2E-24 7E-29 204.3 12.9 145 128-273 75-243 (382)
8 PF02434 Fringe: Fringe-like; 99.2 2.4E-11 5.3E-16 111.2 8.0 120 133-271 6-128 (252)
9 KOG2246 Galactosyltransferases 99.1 8.9E-11 1.9E-15 113.0 8.2 113 129-267 87-205 (364)
10 PLN03153 hypothetical protein; 97.9 4.5E-05 9.7E-10 76.5 8.1 118 130-266 119-246 (537)
11 KOG3708 Uncharacterized conser 92.7 0.21 4.5E-06 50.7 5.6 58 208-265 72-132 (681)
12 PF13641 Glyco_tranf_2_3: Glyc 87.9 4.8 0.0001 34.5 9.3 116 135-266 3-123 (228)
13 cd04192 GT_2_like_e Subfamily 85.7 17 0.00037 30.6 11.5 88 172-265 29-118 (229)
14 PF00535 Glycos_transf_2: Glyc 85.6 15 0.00033 28.6 10.9 87 172-266 28-115 (169)
15 TIGR03469 HonB hopene-associat 85.0 27 0.00059 33.5 13.7 36 221-256 123-159 (384)
16 TIGR03472 HpnI hopanoid biosyn 83.9 35 0.00075 32.6 13.8 111 132-256 40-152 (373)
17 PRK11204 N-glycosyltransferase 80.0 37 0.0008 32.6 12.5 108 132-256 53-160 (420)
18 cd04187 DPM1_like_bac Bacteria 76.0 37 0.00079 27.9 10.0 88 171-266 29-116 (181)
19 cd04185 GT_2_like_b Subfamily 75.2 47 0.001 27.7 10.6 46 218-264 68-114 (202)
20 cd06434 GT2_HAS Hyaluronan syn 73.2 36 0.00079 29.0 9.5 75 172-256 29-103 (235)
21 cd06423 CESA_like CESA_like is 72.5 43 0.00093 25.9 10.8 37 220-256 68-104 (180)
22 cd02525 Succinoglycan_BP_ExoA 71.4 64 0.0014 27.5 12.2 46 221-266 72-118 (249)
23 cd04179 DPM_DPG-synthase_like 70.3 50 0.0011 26.8 9.4 74 187-265 41-115 (185)
24 cd04186 GT_2_like_c Subfamily 69.0 54 0.0012 25.7 10.2 29 228-256 72-100 (166)
25 cd06421 CESA_CelA_like CESA_Ce 66.8 43 0.00094 28.4 8.6 38 222-259 76-113 (234)
26 cd04188 DPG_synthase DPG_synth 62.6 95 0.0021 26.2 10.0 87 171-265 30-118 (211)
27 PRK14583 hmsR N-glycosyltransf 59.0 1.8E+02 0.004 28.4 14.6 107 132-255 74-180 (444)
28 COG4092 Predicted glycosyltran 58.0 50 0.0011 31.6 7.7 82 167-253 34-117 (346)
29 cd02510 pp-GalNAc-T pp-GalNAc- 53.5 1.7E+02 0.0038 26.4 11.1 36 222-257 75-110 (299)
30 TIGR01556 rhamnosyltran L-rham 52.4 1.1E+02 0.0023 27.5 8.9 56 198-255 43-98 (281)
31 cd06427 CESA_like_2 CESA_like_ 51.9 1.6E+02 0.0035 25.6 12.6 36 221-256 75-110 (241)
32 cd06442 DPM1_like DPM1_like re 50.6 1.3E+02 0.0028 25.3 8.8 41 225-265 73-114 (224)
33 smart00786 SHR3_chaperone ER m 49.9 14 0.0003 33.3 2.6 29 12-40 6-40 (196)
34 cd06439 CESA_like_1 CESA_like_ 48.8 1.8E+02 0.0038 25.1 14.5 45 221-265 100-145 (251)
35 PF13506 Glyco_transf_21: Glyc 48.7 35 0.00076 29.3 4.9 42 216-257 17-58 (175)
36 PF08229 SHR3_chaperone: ER me 48.3 10 0.00023 34.0 1.6 29 12-40 6-40 (196)
37 cd04191 Glucan_BSP_ModH Glucan 46.9 2.3E+02 0.0049 25.8 10.2 44 213-256 77-121 (254)
38 PF03452 Anp1: Anp1; InterPro 46.3 2E+02 0.0043 27.1 9.8 96 170-266 55-181 (269)
39 PRK05454 glucosyltransferase M 45.0 3.5E+02 0.0075 28.8 12.4 127 130-268 121-256 (691)
40 cd02526 GT2_RfbF_like RfbF is 44.9 1.9E+02 0.0042 24.5 9.0 52 199-252 46-97 (237)
41 PF10111 Glyco_tranf_2_2: Glyc 42.9 2.6E+02 0.0057 25.4 10.7 78 169-253 32-111 (281)
42 cd02520 Glucosylceramide_synth 42.1 2.1E+02 0.0045 24.0 13.4 79 172-255 31-111 (196)
43 cd06420 GT2_Chondriotin_Pol_N 41.8 51 0.0011 26.8 4.7 35 222-256 71-105 (182)
44 cd06438 EpsO_like EpsO protein 41.6 2E+02 0.0044 23.7 9.9 48 220-267 70-118 (183)
45 PF11119 DUF2633: Protein of u 40.5 32 0.0007 25.2 2.8 28 1-31 1-28 (59)
46 cd06913 beta3GnTL1_like Beta 1 40.2 2.3E+02 0.005 24.0 10.8 43 223-265 77-119 (219)
47 cd06433 GT_2_WfgS_like WfgS an 39.5 68 0.0015 26.0 5.1 46 221-266 66-113 (202)
48 TIGR03111 glyc2_xrt_Gpos1 puta 39.4 3.8E+02 0.0082 26.2 13.9 40 221-260 122-161 (439)
49 PF06072 Herpes_US9: Alphaherp 39.0 31 0.00068 25.3 2.5 17 16-32 42-58 (60)
50 cd02514 GT13_GLCNAC-TI GT13_GL 38.1 56 0.0012 31.6 4.9 44 220-263 87-133 (334)
51 PRK10714 undecaprenyl phosphat 37.2 3.6E+02 0.0078 25.4 12.5 87 171-265 38-125 (325)
52 cd04184 GT2_RfbC_Mx_like Myxoc 37.1 2.4E+02 0.0051 23.2 12.5 34 222-255 75-108 (202)
53 cd04195 GT2_AmsE_like GT2_AmsE 36.0 2.5E+02 0.0054 23.1 11.4 75 186-266 42-118 (201)
54 cd00761 Glyco_tranf_GTA_type G 35.8 1.8E+02 0.004 21.6 8.9 33 222-254 69-101 (156)
55 PF04666 Glyco_transf_54: N-Ac 34.2 2.3E+02 0.0049 27.0 8.3 133 130-265 49-207 (297)
56 PF03742 PetN: PetN ; InterPr 34.0 45 0.00098 21.1 2.3 23 11-33 4-26 (29)
57 PLN02726 dolichyl-phosphate be 33.6 3.2E+02 0.007 23.8 13.0 45 221-265 84-129 (243)
58 PF09964 DUF2198: Uncharacteri 32.3 32 0.0007 26.3 1.8 22 13-34 46-67 (74)
59 PF13704 Glyco_tranf_2_4: Glyc 31.1 2.2E+02 0.0048 21.1 7.4 48 199-247 40-88 (97)
60 PF09258 Glyco_transf_64: Glyc 30.2 63 0.0014 29.6 3.7 38 229-266 74-111 (247)
61 cd02522 GT_2_like_a GT_2_like_ 29.8 1.1E+02 0.0024 25.7 4.9 36 223-258 65-100 (221)
62 COG1215 Glycosyltransferases, 29.6 4.9E+02 0.011 24.6 11.5 114 133-261 54-168 (439)
63 PF11772 EpuA: DNA-directed RN 25.4 62 0.0013 22.6 2.1 16 16-31 4-19 (47)
64 cd04196 GT_2_like_d Subfamily 24.6 4E+02 0.0086 21.9 12.3 41 225-265 74-116 (214)
65 PF12273 RCR: Chitin synthesis 23.7 46 0.00099 27.3 1.4 15 18-32 9-23 (130)
66 cd06435 CESA_NdvC_like NdvC_li 22.9 4.7E+02 0.01 22.2 11.3 36 221-256 73-110 (236)
67 PF04846 Herpes_pp38: Herpesvi 22.4 67 0.0015 23.8 1.9 21 11-31 15-35 (63)
68 PLN03182 xyloglucan 6-xylosylt 21.6 5.5E+02 0.012 25.9 8.6 94 149-243 105-210 (429)
69 KOG2859 DNA repair protein, me 21.3 2.3E+02 0.0049 26.7 5.5 53 199-255 37-96 (293)
70 cd04190 Chitin_synth_C C-termi 20.9 1.4E+02 0.0029 26.4 4.0 32 229-260 72-103 (244)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.2e-70 Score=526.34 Aligned_cols=259 Identities=59% Similarity=0.953 Sum_probs=234.9
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccccchheecccccccc-------cCCchHHHHHHHH
Q 023904 6 STTTIISTKWIPFVCLFCFALGILFSNLTWNPPESDGRPSLNVRRREQQVAVASTDCAKK-------AFQDQDVAKEVLK 78 (275)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~ 78 (275)
++|+.||+||+++||++|||+|+|||||||..||+++ +..+..+++++++++++||+.+ +++++|+|+||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 89 (408)
T PLN03193 11 SSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKG-ISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDSKDIIGEVSK 89 (408)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhccccccCCcccc-ccccccchhhhhhhhccccccccccccccccchhHHHHHHhh
Confidence 4588999999999999999999999999999999887 5566668899999999999853 3589999999999
Q ss_pred hhccccCCCcccchhhhhhHHHHhhhhhhhhcCCCCCCCCCCccc----CCCCCCCCCeeEEEEEECCCCChHHHHHHHh
Q 023904 79 TRGAIHDGSVESDRTLDKTIGQLQMELAASRSGREMPGLESSAAN----ASTNSRRPKVFVVIGINTAFSSRKRRDSVRD 154 (275)
Q Consensus 79 ~~~~i~~~~~~~c~~~~~~~s~lemela~ar~~~~~~~~~~~~~~----~~~~~~~~~~~lvI~V~Sap~~~~rR~aIR~ 154 (275)
||++|+ +|||+|++||||||+|++.++.. .++.|++ ......+++++++|+|+|+|+|++||++||+
T Consensus 90 t~~~~~--------~~~~~~~~le~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~ 160 (408)
T PLN03193 90 THNAIQ--------TLDKTISNLEMELAAARAAQESI-LNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRA 160 (408)
T ss_pred HHHHHH--------HHhhhhhHHhHHHHHHHhhhhhh-ccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHH
Confidence 999999 99999999999999999977754 5555543 1233557779999999999999999999999
Q ss_pred hhcccchhhhhhhcCCcEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEecccccCCcchHHHHHHHHHHhhcCCccEE
Q 023904 155 TWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFY 234 (275)
Q Consensus 155 TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~ 234 (275)
|||++++.+.+++...+++++||||++.+.++.+++.|++|+++|||||++||+|+|.|||.||+++|+|+.++|+|+||
T Consensus 161 TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~ 240 (408)
T PLN03193 161 TWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFY 240 (408)
T ss_pred HHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEE
Confidence 99998877777777889999999999986678999999999999999999999999999999999999999999999999
Q ss_pred EEeCCceEEehHHHHHHHhccCCCCceEEEEccccccccC
Q 023904 235 VKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQ 274 (275)
Q Consensus 235 lKvDDDvfVnl~~L~~~L~~~~~~~rlY~G~~~sgPV~~~ 274 (275)
+|+|||+|||+++|+.+|+.+..++++|+|||+++|||++
T Consensus 241 mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~ 280 (408)
T PLN03193 241 VKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQ 280 (408)
T ss_pred EEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccC
Confidence 9999999999999999999988888999999999999975
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-41 Score=304.40 Aligned_cols=145 Identities=70% Similarity=1.088 Sum_probs=140.6
Q ss_pred CCCeeEEEEEECCCCChHHHHHHHhhhcccchhhhhhhcCCcEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEec-cc
Q 023904 130 RPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLE-HI 208 (275)
Q Consensus 130 ~~~~~lvI~V~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld-~~ 208 (275)
.++++++|+|.|+|++.+||+++|+|||++++.++++|+++||.++||||+. +.+++++++|++|+++|+|+|.+| |+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~-~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTA-TLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccC-CccHHHHHHHHHHHHhcCCeEeechhH
Confidence 6799999999999999999999999999999999999999999999999994 468999999999999999999999 99
Q ss_pred ccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccCCCCceEEEEccccccccCC
Q 023904 209 EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKSGPVLSQK 275 (275)
Q Consensus 209 DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlY~G~~~sgPV~~~k 275 (275)
|+|++|+.||+.+|.||..+|+++||+|+|||+|||++.|...|++++.++++|||||++|||+.++
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~ 153 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQP 153 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999883
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.1e-32 Score=277.51 Aligned_cols=138 Identities=22% Similarity=0.350 Sum_probs=124.2
Q ss_pred CCCCeeEEEEEECCCCChHHHHHHHhhhcccchhhhhhhcCCcEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEeccc
Q 023904 129 RRPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHI 208 (275)
Q Consensus 129 ~~~~~~lvI~V~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~ 208 (275)
+.++++|+|+|+|+|+|++||+|||+|||+... .....+.++|++|.+. ++.++..|.+|+++|||||++||.
T Consensus 381 ~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~dF~ 453 (636)
T PLN03133 381 PKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLMPFV 453 (636)
T ss_pred CCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEEeee
Confidence 356799999999999999999999999998642 1244689999999985 478899999999999999999999
Q ss_pred ccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccCCCCceEEEEcc--cccccc
Q 023904 209 EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK--SGPVLS 273 (275)
Q Consensus 209 DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlY~G~~~--sgPV~~ 273 (275)
|+|+|||+||++++.|+..|++++|+||+|||+|||+++|+.+|+.....+++|+|++. ..|+|.
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd 520 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRN 520 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccC
Confidence 99999999999999999999999999999999999999999999887777789999987 458875
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.5e-31 Score=252.94 Aligned_cols=136 Identities=24% Similarity=0.386 Sum_probs=123.8
Q ss_pred CeeEEEEEECCCCChHHHHHHHhhhcccchhhhhhhcCCcEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEecccccC
Q 023904 132 KVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGY 211 (275)
Q Consensus 132 ~~~lvI~V~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~DsY 211 (275)
.++++++|.|++++++||++||+|||++.. ..+..++++|++|.+++.+ .+++.+.+|++.|||||+.||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 489999999999999999999999999863 2456799999999997644 6789999999999999999999999
Q ss_pred CcchHHHHHHHHHHhh-cCCccEEEEeCCceEEehHHHHHHHhcc-CCCCceEEEEccc--ccccc
Q 023904 212 HELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRH-RSKPRVYIGCMKS--GPVLS 273 (275)
Q Consensus 212 ~nLt~Ktl~~f~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~-~~~~rlY~G~~~s--gPV~~ 273 (275)
.|||+||++++.|+.+ |++|+|++|+|||||||+++|+.+|..+ ++.+.+|+|.+.. .|+|.
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~ 233 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRD 233 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCC
Confidence 9999999999999998 7899999999999999999999999999 7889999999874 46654
No 5
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.97 E-value=1.2e-31 Score=212.19 Aligned_cols=91 Identities=42% Similarity=0.705 Sum_probs=82.8
Q ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccc-cccccchheeccccccccc---CCchHHHHHHHHhhccccCCC
Q 023904 12 STKWIPFVCLFCFALGILFSNLTWNPPESDGRPSLN-VRRREQQVAVASTDCAKKA---FQDQDVAKEVLKTRGAIHDGS 87 (275)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~r~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~i~~~~ 87 (275)
|+||+++||+||||+|+|||||||..||+++ +.+. .+.++++++++++||++++ ++++|+|+||+|||++||
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~-~~~~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~eV~kTh~aIq--- 76 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKE-ISRRSSQDAEERLQLVSEDCDPKKLKESDQRDIMGEVSKTHEAIQ--- 76 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCcccc-chhhhccccccccccccccccccccccCCccchhHHHHHHHHHHH---
Confidence 6799999999999999999999999999987 5544 4577899999999999654 788999999999999999
Q ss_pred cccchhhhhhHHHHhhhhhhhhcC
Q 023904 88 VESDRTLDKTIGQLQMELAASRSG 111 (275)
Q Consensus 88 ~~~c~~~~~~~s~lemela~ar~~ 111 (275)
+|||+||+||||||+||++
T Consensus 77 -----~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 77 -----SLDKTISSLEMELAAARAE 95 (95)
T ss_pred -----HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999984
No 6
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.97 E-value=3.5e-30 Score=224.51 Aligned_cols=122 Identities=33% Similarity=0.529 Sum_probs=104.8
Q ss_pred HHHHHHHhhhcccchhhhhhhcCCcEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEecccccCCcchHHHHHHHHHHh
Q 023904 147 KRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAV 226 (275)
Q Consensus 147 ~rR~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~ 226 (275)
+||++||+||+++.. ....++.++||+|.+++.++.+++.|.+|+++|+|||++||.|+|+|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999763 235789999999999866778888999999999999999999999999999999999999
Q ss_pred hcC-CccEEEEeCCceEEehHHHHHHHhcc--C-CCCceEEEEcccccccc
Q 023904 227 AKW-DADFYVKVDDDVHVNLGMLATTLSRH--R-SKPRVYIGCMKSGPVLS 273 (275)
Q Consensus 227 ~~~-~a~F~lKvDDDvfVnl~~L~~~L~~~--~-~~~rlY~G~~~sgPV~~ 273 (275)
++| +++|++|+|||+|||+++|..+|... . ....+|.|++..+|+.+
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r 126 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIR 126 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCcccc
Confidence 955 59999999999999999999999998 2 34456666666554433
No 7
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.91 E-value=3.2e-24 Score=204.27 Aligned_cols=145 Identities=19% Similarity=0.288 Sum_probs=121.1
Q ss_pred CCCCCeeEEEEEECCCCC--hHHHHHHHhhhcccchhhhhhhc-CCcEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEE
Q 023904 128 SRRPKVFVVIGINTAFSS--RKRRDSVRDTWMPQGEKLIQLER-EKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLR 204 (275)
Q Consensus 128 ~~~~~~~lvI~V~Sap~~--~~rR~aIR~TW~~~~~~l~kLe~-~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ 204 (275)
-..++.++++||.|..++ +.||++.|+||.+......+-.+ ...+.++|++|..++.+-+.+.++.+|+++|||||+
T Consensus 75 w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVi 154 (382)
T PTZ00210 75 WKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIIT 154 (382)
T ss_pred hccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEE
Confidence 346788999999999998 89999999999986542211111 223668899999998777999999999999999999
Q ss_pred ecc------------------cccCCcchHHHHHHHHHHhh-cCCccEEEEeCCceEEehHHHHHHHhccCCCCceEEEE
Q 023904 205 LEH------------------IEGYHELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGC 265 (275)
Q Consensus 205 ld~------------------~DsY~nLt~Ktl~~f~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlY~G~ 265 (275)
+|| .|+|.++|.||+++|+|+.. |++++|++|+|||+|||++.++++|+.. ++..+|+|.
T Consensus 155 lpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~ 233 (382)
T PTZ00210 155 LPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGR 233 (382)
T ss_pred EecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEe
Confidence 999 67778899999999999999 5699999999999999999999999765 455699999
Q ss_pred ccc--ccccc
Q 023904 266 MKS--GPVLS 273 (275)
Q Consensus 266 ~~s--gPV~~ 273 (275)
+.. .|++.
T Consensus 234 v~~~~~p~Rd 243 (382)
T PTZ00210 234 YNYYNRIWRR 243 (382)
T ss_pred eCCCCccccC
Confidence 763 35554
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.22 E-value=2.4e-11 Score=111.17 Aligned_cols=120 Identities=19% Similarity=0.299 Sum_probs=65.4
Q ss_pred eeEEEEEECCCCChHHH-HHHHhhhcccchhhhhhhcCCcEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEecccccC
Q 023904 133 VFVVIGINTAFSSRKRR-DSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGY 211 (275)
Q Consensus 133 ~~lvI~V~Sap~~~~rR-~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~DsY 211 (275)
-.++|+|+|++.+.+.| .+|.+||++... .. .|+..... +.. +..+ ...+++.-+...++
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~---------~~--~~ifsd~~--d~~----l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCN---------KQ--TFIFSDAE--DPS----LPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSG---------GG--EEEEESS----HH----HHHH--HGGGEEE-------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcC---------Cc--eEEecCcc--ccc----cccc--cccccccCCCcchh
Confidence 36899999999876655 899999999863 12 24322211 222 2222 33455555555555
Q ss_pred CcchHHHHHHHHHHhh-cCCccEEEEeCCceEEehHHHHHHHhccCCCCceEEEEcc-cccc
Q 023904 212 HELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK-SGPV 271 (275)
Q Consensus 212 ~nLt~Ktl~~f~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlY~G~~~-sgPV 271 (275)
...+++.++.+.+... ..+++|++++|||+||++++|..+|..+++..++|+|+.. .+|.
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~ 128 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPI 128 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccc
Confidence 4445555554444332 3688999999999999999999999999999999999854 3443
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.15 E-value=8.9e-11 Score=113.02 Aligned_cols=113 Identities=25% Similarity=0.344 Sum_probs=91.6
Q ss_pred CCCCeeEEEEEECCCCChHHH-HHHHhhhcccchhhhhhhcCCcEEEEEEe---ecCCCCCchhHHHHHHHHhhCCCEEE
Q 023904 129 RRPKVFVVIGINTAFSSRKRR-DSVRDTWMPQGEKLIQLEREKGIIIRFMI---GHSATSNSILDKAIDSEDAQHKDFLR 204 (275)
Q Consensus 129 ~~~~~~lvI~V~Sap~~~~rR-~aIR~TW~~~~~~l~kLe~~~~v~v~FVv---G~s~~~~~~l~~~I~~E~~~y~DIL~ 204 (275)
-.++..+++.|.|++.+..-| +.+-+||++.++ + ..|+- .... ..+.= |.
T Consensus 87 l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~--------~---~~f~s~~~s~~~--------------~~f~~-v~ 140 (364)
T KOG2246|consen 87 LSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD--------K---GIFFSPTLSKDD--------------SRFPT-VY 140 (364)
T ss_pred cCCCceEEEEEEecCcCceeehhhhhcccccccC--------c---ceecCccCCCCC--------------CcCce-ee
Confidence 357789999999999888766 799999998864 2 22333 3221 11222 26
Q ss_pred ecccccCCcchHHHHHHHHHHhhc--CCccEEEEeCCceEEehHHHHHHHhccCCCCceEEEEcc
Q 023904 205 LEHIEGYHELSAKTKIFFSTAVAK--WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK 267 (275)
Q Consensus 205 ld~~DsY~nLt~Ktl~~f~wa~~~--~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlY~G~~~ 267 (275)
.+..|+|+++..||..+|+++.++ .+++|++|+|||||+.++||..+|..+++.+.+|+|+..
T Consensus 141 ~~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~ 205 (364)
T KOG2246|consen 141 YNLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRS 205 (364)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccc
Confidence 788999999999999999999864 599999999999999999999999999999999999953
No 10
>PLN03153 hypothetical protein; Provisional
Probab=97.86 E-value=4.5e-05 Score=76.50 Aligned_cols=118 Identities=22% Similarity=0.283 Sum_probs=70.2
Q ss_pred CCCeeEEEEEECCCCChH-HHHHHHhhhcccchhhhhhhcCCcEEEEEEeecCCCC--CchhHHHHHHHHhhCCCEEEec
Q 023904 130 RPKVFVVIGINTAFSSRK-RRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATS--NSILDKAIDSEDAQHKDFLRLE 206 (275)
Q Consensus 130 ~~~~~lvI~V~Sap~~~~-rR~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~--~~~l~~~I~~E~~~y~DIL~ld 206 (275)
..--.++++|.++....+ |+..|+.+|.+... .| .+|+.....+. +..+.. ...-.|-=.
T Consensus 119 t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~--------rg--~v~ld~~~~~~~~~~~~P~-----i~is~d~s~-- 181 (537)
T PLN03153 119 LSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQM--------RG--HVWLEEQVSPEEGDDSLPP-----IMVSEDTSR-- 181 (537)
T ss_pred CccccEEEEEEEchhhhhhhhhhhhhhcCcccc--------ee--EEEecccCCCCCCcCCCCC-----EEeCCCccc--
Confidence 344578999998887665 55899999997531 12 24544433210 000000 000000000
Q ss_pred ccccCCc---chHHHHH--HHHHHhh--cCCccEEEEeCCceEEehHHHHHHHhccCCCCceEEEEc
Q 023904 207 HIEGYHE---LSAKTKI--FFSTAVA--KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCM 266 (275)
Q Consensus 207 ~~DsY~n---Lt~Ktl~--~f~wa~~--~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlY~G~~ 266 (275)
| .|.| .....-+ +...+.. .++++||+++|||+|+.+++|+.+|..+++++.+|+|..
T Consensus 182 f--~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~ 246 (537)
T PLN03153 182 F--RYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGP 246 (537)
T ss_pred c--cccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccc
Confidence 1 1222 1221111 2222222 589999999999999999999999999999999999953
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.68 E-value=0.21 Score=50.68 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=44.5
Q ss_pred cccCCcchHHHH-HHHHHHhhc--CCccEEEEeCCceEEehHHHHHHHhccCCCCceEEEE
Q 023904 208 IEGYHELSAKTK-IFFSTAVAK--WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGC 265 (275)
Q Consensus 208 ~DsY~nLt~Ktl-~~f~wa~~~--~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlY~G~ 265 (275)
+-.|..-..|+. +.+.++.++ -++||++-+-|++|||...|+.++....-+.++|+|-
T Consensus 72 vs~~d~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGE 132 (681)
T KOG3708|consen 72 VSPYDLRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGE 132 (681)
T ss_pred cCccccCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccch
Confidence 333443344443 455666664 4899999999999999999999999988888999994
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=87.89 E-value=4.8 Score=34.50 Aligned_cols=116 Identities=13% Similarity=0.084 Sum_probs=54.2
Q ss_pred EEEEEECCCCChHHHHHHHhhhcccchhhhhhhcCCcEEEEEEeecCCCCCchhHHHHHHHHhhCCCE--EEecccccCC
Q 023904 135 VVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDF--LRLEHIEGYH 212 (275)
Q Consensus 135 lvI~V~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DI--L~ld~~DsY~ 212 (275)
+.|+|.+.-....-++.++.--... . ..+.+.++...+. +.....+.+-...|... -.+... .
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~--------~-~~~~v~vvd~~~~---~~~~~~~~~~~~~~~~~~v~vi~~~---~ 67 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQD--------Y-PRLEVVVVDDGSD---DETAEILRALAARYPRVRVRVIRRP---R 67 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSH--------H-HTEEEEEEEE-SS---S-GCTTHHHHHHTTGG-GEEEEE------
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCC--------C-CCeEEEEEECCCC---hHHHHHHHHHHHHcCCCceEEeecC---C
Confidence 4555555444344444554444221 1 2255545553332 33334455555566653 222221 2
Q ss_pred cch--HHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcc-CCCCceEEEEc
Q 023904 213 ELS--AKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH-RSKPRVYIGCM 266 (275)
Q Consensus 213 nLt--~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~-~~~~rlY~G~~ 266 (275)
|.- .|.. .+.++.+..+.+|++.+|||+.+.++.|..++... .+.-.+..|.+
T Consensus 68 ~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~ 123 (228)
T PF13641_consen 68 NPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPV 123 (228)
T ss_dssp -HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEE
T ss_pred CCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeE
Confidence 222 2333 45666666789999999999999999988888776 34334444443
No 13
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.67 E-value=17 Score=30.63 Aligned_cols=88 Identities=16% Similarity=0.104 Sum_probs=49.9
Q ss_pred EEEEEEeecCCCCCchhHHHHH-HHHhhCCCEEEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHH
Q 023904 172 IIIRFMIGHSATSNSILDKAID-SEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (275)
Q Consensus 172 v~v~FVvG~s~~~~~~l~~~I~-~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 250 (275)
+.+..|-+.+. +.....+. .....+..+..++..+. .+. .|. .++.++.+....+|++.+|+|..+.++.|..
T Consensus 29 ~eiivvdd~s~---d~t~~~~~~~~~~~~~~v~~~~~~~~-~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~ 102 (229)
T cd04192 29 FEVILVDDHST---DGTVQILEFAAAKPNFQLKILNNSRV-SIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLT 102 (229)
T ss_pred eEEEEEcCCCC---cChHHHHHHHHhCCCcceEEeeccCc-ccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHH
Confidence 55555554442 22233343 22222344555555442 222 333 3355666667899999999999999988888
Q ss_pred HHhccCC-CCceEEEE
Q 023904 251 TLSRHRS-KPRVYIGC 265 (275)
Q Consensus 251 ~L~~~~~-~~rlY~G~ 265 (275)
++..+.. ...++.|.
T Consensus 103 l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 103 FVAFIQKEQIGLVAGP 118 (229)
T ss_pred HHHHhhcCCCcEEeee
Confidence 8875433 33344454
No 14
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=85.59 E-value=15 Score=28.64 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=46.0
Q ss_pred EEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHH
Q 023904 172 IIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATT 251 (275)
Q Consensus 172 v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 251 (275)
+.+.+|-..+ + +.....+.+-.+....+..+...+.. .+.. .+..+.+....+|++.+|||.++..+.|..+
T Consensus 28 ~eiivvdd~s-~--d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~----~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l 99 (169)
T PF00535_consen 28 FEIIVVDDGS-T--DETEEILEEYAESDPNIRYIRNPENL-GFSA----ARNRGIKHAKGEYILFLDDDDIISPDWLEEL 99 (169)
T ss_dssp EEEEEEECS--S--SSHHHHHHHHHCCSTTEEEEEHCCCS-HHHH----HHHHHHHH--SSEEEEEETTEEE-TTHHHHH
T ss_pred EEEEEecccc-c--cccccccccccccccccccccccccc-cccc----cccccccccceeEEEEeCCCceEcHHHHHHH
Confidence 4554444433 2 33444344333335556555555443 2222 3333444456669999999999999877776
Q ss_pred HhccCC-CCceEEEEc
Q 023904 252 LSRHRS-KPRVYIGCM 266 (275)
Q Consensus 252 L~~~~~-~~rlY~G~~ 266 (275)
+..... ...+.+|..
T Consensus 100 ~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 100 VEALEKNPPDVVIGSV 115 (169)
T ss_dssp HHHHHHCTTEEEEEEE
T ss_pred HHHHHhCCCcEEEEEE
Confidence 666544 334555553
No 15
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=84.98 E-value=27 Score=33.48 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=27.3
Q ss_pred HHHHHhh-cCCccEEEEeCCceEEehHHHHHHHhccC
Q 023904 221 FFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHR 256 (275)
Q Consensus 221 ~f~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 256 (275)
+++.+.+ ..+.+|++.+|+|+.+.++.|...++...
T Consensus 123 g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~ 159 (384)
T TIGR03469 123 GIAAARTLAPPADYLLLTDADIAHGPDNLARLVARAR 159 (384)
T ss_pred HHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 5555543 23489999999999999988888877653
No 16
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=83.85 E-value=35 Score=32.60 Aligned_cols=111 Identities=13% Similarity=0.074 Sum_probs=60.5
Q ss_pred CeeEEEEEECCCCChHHHHHHHhhhcccchhhhhhhcCCcEEEEEEeecCCCCCchhHHHHHHHHhhCCC--EEEecccc
Q 023904 132 KVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKD--FLRLEHIE 209 (275)
Q Consensus 132 ~~~lvI~V~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~D--IL~ld~~D 209 (275)
.+.+-|+|.+.-....-.+.++ +...+. ...+.++|+...+. |+. ...+++=.++|.+ +..+.-.+
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~-Sl~~q~--------Yp~~EIivvdd~s~--D~t-~~iv~~~~~~~p~~~i~~v~~~~ 107 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLA-SFCRQD--------YPGFQMLFGVQDPD--DPA-LAVVRRLRADFPDADIDLVIDAR 107 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHH-HHHhcC--------CCCeEEEEEeCCCC--CcH-HHHHHHHHHhCCCCceEEEECCC
Confidence 3445565665544433344553 333332 12366766665442 222 2233332355666 32221111
Q ss_pred cCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccC
Q 023904 210 GYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR 256 (275)
Q Consensus 210 sY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 256 (275)
-.....|.-.... +.+..+.+|++.+|+|+.+.++.|...+....
T Consensus 108 -~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 108 -RHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred -CCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhc
Confidence 1222346544433 44567899999999999999999988887763
No 17
>PRK11204 N-glycosyltransferase; Provisional
Probab=80.04 E-value=37 Score=32.56 Aligned_cols=108 Identities=17% Similarity=0.106 Sum_probs=61.2
Q ss_pred CeeEEEEEECCCCChHHHHHHHhhhcccchhhhhhhcCCcEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEecccccC
Q 023904 132 KVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGY 211 (275)
Q Consensus 132 ~~~lvI~V~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~DsY 211 (275)
.+.+-|+|.+.-+. +.|+++-..-. +. ......+ +|+...++ +...+.+++..++|..+..+...+
T Consensus 53 ~p~vsViIp~yne~----~~i~~~l~sl~----~q-~yp~~ei-iVvdD~s~--d~t~~~l~~~~~~~~~v~~i~~~~-- 118 (420)
T PRK11204 53 YPGVSILVPCYNEG----ENVEETISHLL----AL-RYPNYEV-IAINDGSS--DNTGEILDRLAAQIPRLRVIHLAE-- 118 (420)
T ss_pred CCCEEEEEecCCCH----HHHHHHHHHHH----hC-CCCCeEE-EEEECCCC--ccHHHHHHHHHHhCCcEEEEEcCC--
Confidence 34566666665543 34555443211 01 1123444 44444332 334444555556666666555333
Q ss_pred CcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccC
Q 023904 212 HELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR 256 (275)
Q Consensus 212 ~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 256 (275)
|. .|. .++..+.+..+.+|++..|+|..+..+.|...++...
T Consensus 119 -n~-Gka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~ 160 (420)
T PRK11204 119 -NQ-GKA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFL 160 (420)
T ss_pred -CC-CHH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 32 243 3456666667899999999999999998888887653
No 18
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=76.05 E-value=37 Score=27.95 Aligned_cols=88 Identities=11% Similarity=0.112 Sum_probs=52.3
Q ss_pred cEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHH
Q 023904 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (275)
Q Consensus 171 ~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 250 (275)
.+.+..|-+.+. ++ ....+.....++..+..+.+..++. +. .++..+.++...+|++.+|+|.....+.|..
T Consensus 29 ~~eiivvdd~s~--d~-t~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 100 (181)
T cd04187 29 DYEIIFVDDGST--DR-TLEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIPE 100 (181)
T ss_pred CeEEEEEeCCCC--cc-HHHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHH
Confidence 355555554442 22 2333444445566666665543332 21 3334444455679999999999999888888
Q ss_pred HHhccCCCCceEEEEc
Q 023904 251 TLSRHRSKPRVYIGCM 266 (275)
Q Consensus 251 ~L~~~~~~~rlY~G~~ 266 (275)
.++...+...+..|..
T Consensus 101 l~~~~~~~~~~v~g~~ 116 (181)
T cd04187 101 MLAKWEEGYDVVYGVR 116 (181)
T ss_pred HHHHHhCCCcEEEEEe
Confidence 8876555556666654
No 19
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=75.22 E-value=47 Score=27.74 Aligned_cols=46 Identities=17% Similarity=0.106 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccC-CCCceEEE
Q 023904 218 TKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR-SKPRVYIG 264 (275)
Q Consensus 218 tl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~-~~~rlY~G 264 (275)
.-.++.++. ..+.+|++..|||..+..+.|...+.... +...++.|
T Consensus 68 ~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~ 114 (202)
T cd04185 68 FYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAP 114 (202)
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecc
Confidence 344566666 56899999999999999887777766553 33334444
No 20
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=73.21 E-value=36 Score=29.04 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=45.4
Q ss_pred EEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHH
Q 023904 172 IIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATT 251 (275)
Q Consensus 172 v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 251 (275)
..+.+|...+. +.....+ .+...+..+.... .+. ..|.. ++..+....+.+|++..|+|+.+..+.|...
T Consensus 29 ~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l 98 (235)
T cd06434 29 LEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEM 98 (235)
T ss_pred CEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHH
Confidence 44555554442 2233323 3455666665554 222 12332 2334444458999999999999999999888
Q ss_pred HhccC
Q 023904 252 LSRHR 256 (275)
Q Consensus 252 L~~~~ 256 (275)
+....
T Consensus 99 ~~~~~ 103 (235)
T cd06434 99 LKPFE 103 (235)
T ss_pred HHhcc
Confidence 88775
No 21
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=72.48 E-value=43 Score=25.94 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=27.9
Q ss_pred HHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccC
Q 023904 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR 256 (275)
Q Consensus 220 ~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 256 (275)
..+.++.+..+.+|++.+|+|..+..+.|..++..+.
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~ 104 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFF 104 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhc
Confidence 3445555556999999999999998887777745543
No 22
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=71.39 E-value=64 Score=27.49 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=32.6
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccCCC-CceEEEEc
Q 023904 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSK-PRVYIGCM 266 (275)
Q Consensus 221 ~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~-~rlY~G~~ 266 (275)
++..+.+....+|++.+|||..+.++.|...+...... ..+..|+.
T Consensus 72 a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~ 118 (249)
T cd02525 72 GLNIGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPM 118 (249)
T ss_pred HHHHHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecce
Confidence 45566665689999999999999988888888654332 23444543
No 23
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=70.35 E-value=50 Score=26.84 Aligned_cols=74 Identities=14% Similarity=0.090 Sum_probs=46.6
Q ss_pred hhHHHHHHHHhhCCCEEEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhc-cCCCCceEEEE
Q 023904 187 ILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSR-HRSKPRVYIGC 265 (275)
Q Consensus 187 ~l~~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~-~~~~~rlY~G~ 265 (275)
.....+..-..++..+..+...+... + -.++..+.+....+|++..|+|..+.++.|..++.. ..+...+..|.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~n~G----~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 41 GTAEIARELAARVPRVRVIRLSRNFG----K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred ChHHHHHHHHHhCCCeEEEEccCCCC----c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 33444555555666665555544432 1 133444445555699999999999999988888886 34445566665
No 24
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=69.00 E-value=54 Score=25.74 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=24.6
Q ss_pred cCCccEEEEeCCceEEehHHHHHHHhccC
Q 023904 228 KWDADFYVKVDDDVHVNLGMLATTLSRHR 256 (275)
Q Consensus 228 ~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 256 (275)
..+.+|++..|||..+..+.+..++....
T Consensus 72 ~~~~~~i~~~D~D~~~~~~~l~~~~~~~~ 100 (166)
T cd04186 72 EAKGDYVLLLNPDTVVEPGALLELLDAAE 100 (166)
T ss_pred hCCCCEEEEECCCcEECccHHHHHHHHHH
Confidence 34899999999999999998888887543
No 25
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=66.82 E-value=43 Score=28.40 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=29.5
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHhccCCCC
Q 023904 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKP 259 (275)
Q Consensus 222 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~ 259 (275)
+..+.+..+.+|++..|+|+++.++.|..++.....++
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 113 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDP 113 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCC
Confidence 34445555899999999999999998888888765433
No 26
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=62.61 E-value=95 Score=26.24 Aligned_cols=87 Identities=11% Similarity=0.004 Sum_probs=50.9
Q ss_pred cEEEEEEeecCCCCCchhHHHHHHHHhhCCCE-EEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHH
Q 023904 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDF-LRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 249 (275)
Q Consensus 171 ~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DI-L~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~ 249 (275)
.+.++.|-+.|. +.....+.+..++++.. ..+....+. ... .++..+.+....+|++.+|+|..+.++.|.
T Consensus 30 ~~eiivvdd~S~---D~t~~~~~~~~~~~~~~i~~i~~~~n~-G~~----~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~ 101 (211)
T cd04188 30 SYEIIVVDDGSK---DGTAEVARKLARKNPALIRVLTLPKNR-GKG----GAVRAGMLAARGDYILFADADLATPFEELE 101 (211)
T ss_pred CEEEEEEeCCCC---CchHHHHHHHHHhCCCcEEEEEcccCC-CcH----HHHHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence 456655555543 23334444555566664 223332222 112 233334444567999999999999999998
Q ss_pred HHHhc-cCCCCceEEEE
Q 023904 250 TTLSR-HRSKPRVYIGC 265 (275)
Q Consensus 250 ~~L~~-~~~~~rlY~G~ 265 (275)
.+++. ......+.+|.
T Consensus 102 ~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 102 KLEEALKTSGYDIAIGS 118 (211)
T ss_pred HHHHHHhccCCcEEEEE
Confidence 88887 33445677775
No 27
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=58.99 E-value=1.8e+02 Score=28.39 Aligned_cols=107 Identities=13% Similarity=0.118 Sum_probs=59.9
Q ss_pred CeeEEEEEECCCCChHHHHHHHhhhcccchhhhhhhcCCcEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEecccccC
Q 023904 132 KVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGY 211 (275)
Q Consensus 132 ~~~lvI~V~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~DsY 211 (275)
.+.+-|+|.+.-+...-++.|+. -..+. ...+.+.+|-..+. +...+.+++..++|..+......+
T Consensus 74 ~p~vsViIP~yNE~~~i~~~l~s-ll~q~--------yp~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~~-- 139 (444)
T PRK14583 74 HPLVSILVPCFNEGLNARETIHA-ALAQT--------YTNIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLAH-- 139 (444)
T ss_pred CCcEEEEEEeCCCHHHHHHHHHH-HHcCC--------CCCeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeCC--
Confidence 34566666666544333333332 12221 12455544443332 334444555556666654443222
Q ss_pred CcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcc
Q 023904 212 HELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH 255 (275)
Q Consensus 212 ~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 255 (275)
|. .|. .+++.+....+.+|++-.|+|..+..+.|...++..
T Consensus 140 -n~-Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~ 180 (444)
T PRK14583 140 -NQ-GKA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPL 180 (444)
T ss_pred -CC-CHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHH
Confidence 22 243 355666666789999999999999999888887755
No 28
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=57.97 E-value=50 Score=31.57 Aligned_cols=82 Identities=16% Similarity=0.115 Sum_probs=58.9
Q ss_pred hcCCcEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEeccc--ccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEe
Q 023904 167 EREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHI--EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVN 244 (275)
Q Consensus 167 e~~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~--DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVn 244 (275)
....++.+.|+=|.+ ..++.|..=.....-++.+++. +.+...+.--..+..|+.+.|+..+++..|-|+|..
T Consensus 34 ts~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S 108 (346)
T COG4092 34 TSSDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGS 108 (346)
T ss_pred cccccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEecccccc
Confidence 345566666766654 4556666666666667777753 334333444556778888889999999999999999
Q ss_pred hHHHHHHHh
Q 023904 245 LGMLATTLS 253 (275)
Q Consensus 245 l~~L~~~L~ 253 (275)
.++..+.|.
T Consensus 109 ~dnF~k~l~ 117 (346)
T COG4092 109 SDNFAKMLS 117 (346)
T ss_pred HHHHHHHHH
Confidence 999999884
No 29
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=53.46 E-value=1.7e+02 Score=26.44 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=27.0
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHhccCC
Q 023904 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRS 257 (275)
Q Consensus 222 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~ 257 (275)
...+.+....+|++..|+|+.+..+-|..++.....
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~ 110 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAE 110 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHh
Confidence 334444457899999999999998888777766543
No 30
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=52.37 E-value=1.1e+02 Score=27.49 Aligned_cols=56 Identities=7% Similarity=0.021 Sum_probs=35.6
Q ss_pred hCCCEEEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcc
Q 023904 198 QHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH 255 (275)
Q Consensus 198 ~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 255 (275)
.+..|..+...++. ....=--.++++|.+ .+++|++..|||+.+..+.|...+...
T Consensus 43 ~~~~i~~i~~~~N~-G~a~a~N~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~ 98 (281)
T TIGR01556 43 RGQKIALIHLGDNQ-GIAGAQNQGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLL 98 (281)
T ss_pred cCCCeEEEECCCCc-chHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 34556555443332 122222235667665 378999999999999988877777654
No 31
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=51.92 E-value=1.6e+02 Score=25.57 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=29.7
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccC
Q 023904 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR 256 (275)
Q Consensus 221 ~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 256 (275)
++.++.+....+|++.+|+|+.+.++.|...+....
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~ 110 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFA 110 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHH
Confidence 455566666789999999999999999988888764
No 32
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=50.60 E-value=1.3e+02 Score=25.26 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=30.2
Q ss_pred HhhcCCccEEEEeCCceEEehHHHHHHHhc-cCCCCceEEEE
Q 023904 225 AVAKWDADFYVKVDDDVHVNLGMLATTLSR-HRSKPRVYIGC 265 (275)
Q Consensus 225 a~~~~~a~F~lKvDDDvfVnl~~L~~~L~~-~~~~~rlY~G~ 265 (275)
+.+....+|++.+|+|..+.++.|..++.. ..++..+.+|.
T Consensus 73 g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 114 (224)
T cd06442 73 GFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGS 114 (224)
T ss_pred HHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 333345699999999999999988888886 34555666664
No 33
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=49.91 E-value=14 Score=33.26 Aligned_cols=29 Identities=34% Similarity=0.565 Sum_probs=23.2
Q ss_pred cchhHHHHHHHHHHHHHHHhcC------CCCCCCC
Q 023904 12 STKWIPFVCLFCFALGILFSNL------TWNPPES 40 (275)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~r------~w~~~~~ 40 (275)
+-...+++|-.||++|++|++- ||+.+..
T Consensus 6 ~~~t~lIl~~tsF~lGvlf~~~pyD~~~Lw~~~~t 40 (196)
T smart00786 6 SFGTALIIGSTSFFLGILFANFPYDYPLLWSPDPT 40 (196)
T ss_pred ccccchhhhhHHHHHHHHHhcCccccchhcCCCCC
Confidence 4456799999999999999983 5877654
No 34
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=48.78 E-value=1.8e+02 Score=25.13 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=31.4
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccC-CCCceEEEE
Q 023904 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR-SKPRVYIGC 265 (275)
Q Consensus 221 ~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~-~~~rlY~G~ 265 (275)
.+..+.+....+|++.+|+|+.+..+.|...+.... +...+..|.
T Consensus 100 a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 145 (251)
T cd06439 100 ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGE 145 (251)
T ss_pred HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeE
Confidence 344555556779999999999999888888877764 233344443
No 35
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=48.69 E-value=35 Score=29.28 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccCC
Q 023904 216 AKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRS 257 (275)
Q Consensus 216 ~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~ 257 (275)
.|+-..........+++|++-.|+|+.|+++.|...+..+..
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~ 58 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLAD 58 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhC
Confidence 455544443332378999999999999999999998887643
No 36
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=48.35 E-value=10 Score=34.00 Aligned_cols=29 Identities=38% Similarity=0.667 Sum_probs=23.4
Q ss_pred cchhHHHHHHHHHHHHHHHhc------CCCCCCCC
Q 023904 12 STKWIPFVCLFCFALGILFSN------LTWNPPES 40 (275)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~------r~w~~~~~ 40 (275)
|-+..+++|-.||++|++|++ -||+.+.+
T Consensus 6 ~~~t~lIi~stsF~LG~lf~~~~yD~~~Lw~~~~t 40 (196)
T PF08229_consen 6 SFGTGLIICSTSFLLGVLFSNWPYDYPTLWSSPPT 40 (196)
T ss_pred ceeeeeehHhhHHHHHHHHHcccchhHHhcCCCCC
Confidence 445678999999999999998 35887654
No 37
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=46.87 E-value=2.3e+02 Score=25.82 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHHhhc-CCccEEEEeCCceEEehHHHHHHHhccC
Q 023904 213 ELSAKTKIFFSTAVAK-WDADFYVKVDDDVHVNLGMLATTLSRHR 256 (275)
Q Consensus 213 nLt~Ktl~~f~wa~~~-~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 256 (275)
|.-.|+-..-...... .+.+|++-.|.|+.+.++.|...+....
T Consensus 77 ~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~ 121 (254)
T cd04191 77 NTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRME 121 (254)
T ss_pred CCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3334544333332222 5789999999999999999999888753
No 38
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=46.30 E-value=2e+02 Score=27.10 Aligned_cols=96 Identities=11% Similarity=0.086 Sum_probs=57.8
Q ss_pred CcEEEEEEeecCCCCCchhHHHHHHHH----------hhCCCEEEe--cccccC------------CcchHHHHHHHH-H
Q 023904 170 KGIIIRFMIGHSATSNSILDKAIDSED----------AQHKDFLRL--EHIEGY------------HELSAKTKIFFS-T 224 (275)
Q Consensus 170 ~~v~v~FVvG~s~~~~~~l~~~I~~E~----------~~y~DIL~l--d~~DsY------------~nLt~Ktl~~f~-w 224 (275)
.-|.+-|++|.+.. ++...+.++.+. ..|+-|.++ ||.+.- ...-.+.++--+ |
T Consensus 55 ~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~ 133 (269)
T PF03452_consen 55 ELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNF 133 (269)
T ss_pred hheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHH
Confidence 34888899999863 333434444333 345666554 453321 111122222111 2
Q ss_pred Hhh---cCCccEEEEeCCceEEehHHHHHHHhccCCC---CceEEEEc
Q 023904 225 AVA---KWDADFYVKVDDDVHVNLGMLATTLSRHRSK---PRVYIGCM 266 (275)
Q Consensus 225 a~~---~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~---~rlY~G~~ 266 (275)
+.. .+..+|++-.|-|+.-.++.|++-|..++.. |++|.++.
T Consensus 134 LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~kdIivPn~~~~~~ 181 (269)
T PF03452_consen 134 LLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHDKDIIVPNCWRRYY 181 (269)
T ss_pred HHHhhcCCcccEEEEEecCcccCChHHHHHHHhCCCCEEccceeeccc
Confidence 222 3689999999999999999999999987642 56666643
No 39
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=44.98 E-value=3.5e+02 Score=28.80 Aligned_cols=127 Identities=12% Similarity=0.079 Sum_probs=70.1
Q ss_pred CCCeeEEEEEECCCCChH-HHHHHHhhhcccchhhhhhhcCCcEEEEEEeecCCCCCchhHH----HHHHHHhhCC---C
Q 023904 130 RPKVFVVIGINTAFSSRK-RRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDK----AIDSEDAQHK---D 201 (275)
Q Consensus 130 ~~~~~lvI~V~Sap~~~~-rR~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~~~~l~~----~I~~E~~~y~---D 201 (275)
.....+.|+|.+.-...+ -+..|+.++..-.. ......+.+ ||+..+.+ +.... .+.+=.++|+ .
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d--~~~~~~e~~~~~~L~~~~~~~~~ 193 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRD--PDIAAAEEAAWLELRAELGGEGR 193 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCC--hhHHHHHHHHHHHHHHhcCCCCc
Confidence 455667777777766543 23567777754211 111224555 88877653 32211 1222233443 3
Q ss_pred EEEecccccCCcchHHHHHHHHHHhhc-CCccEEEEeCCceEEehHHHHHHHhccCCCCceEEEEccc
Q 023904 202 FLRLEHIEGYHELSAKTKIFFSTAVAK-WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMKS 268 (275)
Q Consensus 202 IL~ld~~DsY~nLt~Ktl~~f~wa~~~-~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlY~G~~~s 268 (275)
|.... --.|.-.|.-..-.|.... .+++|++-.|-|+.+..+.|..++.....+++ +|.+..
T Consensus 194 i~yr~---R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt 256 (691)
T PRK05454 194 IFYRR---RRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQT 256 (691)
T ss_pred EEEEE---CCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeC
Confidence 33322 2234444655444444331 47799999999999999999999876533333 355443
No 40
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=44.86 E-value=1.9e+02 Score=24.50 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=33.8
Q ss_pred CCCEEEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHH
Q 023904 199 HKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTL 252 (275)
Q Consensus 199 y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L 252 (275)
...+..+...++. ....=--.+++++... +++|++..|||+.+.++.|..++
T Consensus 46 ~~~i~~i~~~~n~-G~~~a~N~g~~~a~~~-~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 46 SEKIELIHLGENL-GIAKALNIGIKAALEN-GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCcEEEEECCCce-ehHHhhhHHHHHHHhC-CCCEEEEECCCCCcCHhHHHHHH
Confidence 4455554443332 1233333456665543 78999999999999998888885
No 41
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=42.92 E-value=2.6e+02 Score=25.42 Aligned_cols=78 Identities=10% Similarity=0.024 Sum_probs=47.0
Q ss_pred CCcEEEEEEeecCCCCCchhHHHHHHHHhhCCCE-EE-ecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehH
Q 023904 169 EKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDF-LR-LEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLG 246 (275)
Q Consensus 169 ~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DI-L~-ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~ 246 (275)
...+.+++|=+.++ ......|.+-.+.++-+ ++ .+....+.+.+ .+..-+.+....+|++..|.|+.+.++
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 34566655555443 33445566666666665 22 22211122221 123334445699999999999999999
Q ss_pred HHHHHHh
Q 023904 247 MLATTLS 253 (275)
Q Consensus 247 ~L~~~L~ 253 (275)
.+...+.
T Consensus 105 ~i~~~~~ 111 (281)
T PF10111_consen 105 FIEKLLN 111 (281)
T ss_pred HHHHHHH
Confidence 9999988
No 42
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=42.07 E-value=2.1e+02 Score=23.99 Aligned_cols=79 Identities=16% Similarity=0.073 Sum_probs=45.6
Q ss_pred EEEEEEeecCCCCCchhHHHHHHHHhhCC--CEEEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHH
Q 023904 172 IIIRFMIGHSATSNSILDKAIDSEDAQHK--DFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 249 (275)
Q Consensus 172 v~v~FVvG~s~~~~~~l~~~I~~E~~~y~--DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~ 249 (275)
+.+++|...+. ++ ..+.+.+-...|. ++......... ....|.- .+..+.+....+|++..|+|+.+.++.|.
T Consensus 31 ~eiivVdd~s~--d~-t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 105 (196)
T cd02520 31 YEILFCVQDED--DP-AIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLR 105 (196)
T ss_pred eEEEEEeCCCc--ch-HHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHH
Confidence 66666666553 22 2333444445554 33222221111 1223433 24455556789999999999999988888
Q ss_pred HHHhcc
Q 023904 250 TTLSRH 255 (275)
Q Consensus 250 ~~L~~~ 255 (275)
..+...
T Consensus 106 ~l~~~~ 111 (196)
T cd02520 106 RMVAPL 111 (196)
T ss_pred HHHHHh
Confidence 877764
No 43
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=41.76 E-value=51 Score=26.82 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=27.9
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHhccC
Q 023904 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR 256 (275)
Q Consensus 222 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 256 (275)
+..+.+....+|++..|+|..+..+-|...++...
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~ 105 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAE 105 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhC
Confidence 34455556889999999999999888888887763
No 44
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=41.61 E-value=2e+02 Score=23.72 Aligned_cols=48 Identities=23% Similarity=0.167 Sum_probs=35.2
Q ss_pred HHHHHHhh-cCCccEEEEeCCceEEehHHHHHHHhccCCCCceEEEEcc
Q 023904 220 IFFSTAVA-KWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK 267 (275)
Q Consensus 220 ~~f~wa~~-~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlY~G~~~ 267 (275)
.++.++.. ..+.+|++.+|.|+.+.++.|..++..+.....+..|+..
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~ 118 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYN 118 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEe
Confidence 34555432 2469999999999999998888888877555567777643
No 45
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=40.55 E-value=32 Score=25.22 Aligned_cols=28 Identities=11% Similarity=0.326 Sum_probs=19.2
Q ss_pred CCccCCCcccccchhHHHHHHHHHHHHHHHh
Q 023904 1 MKYRTSTTTIISTKWIPFVCLFCFALGILFS 31 (275)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (275)
||.|..++ -+||+|++.+..|+.=++++
T Consensus 1 ~r~k~~~~---mtriVLLISfiIlfgRl~Y~ 28 (59)
T PF11119_consen 1 MRRKKNSR---MTRIVLLISFIILFGRLIYS 28 (59)
T ss_pred CCCcccch---HHHHHHHHHHHHHHHHHHHH
Confidence 56666555 36899999888887645544
No 46
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=40.20 E-value=2.3e+02 Score=24.00 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=30.3
Q ss_pred HHHhhcCCccEEEEeCCceEEehHHHHHHHhccCCCCceEEEE
Q 023904 223 STAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGC 265 (275)
Q Consensus 223 ~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlY~G~ 265 (275)
..+.+....+|++.+|+|..+.++.|...+......+...+|+
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 3444556889999999999999988877666544334445554
No 47
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=39.52 E-value=68 Score=26.01 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=32.8
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcc--CCCCceEEEEc
Q 023904 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH--RSKPRVYIGCM 266 (275)
Q Consensus 221 ~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~--~~~~rlY~G~~ 266 (275)
.+..+.+..+.+|++..|+|..+..+.+...+... .+...+..|..
T Consensus 66 a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~ 113 (202)
T cd06433 66 AMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDV 113 (202)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeee
Confidence 34555566688999999999999999888887433 23445555553
No 48
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=39.38 E-value=3.8e+02 Score=26.24 Aligned_cols=40 Identities=13% Similarity=0.314 Sum_probs=31.6
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccCCCCc
Q 023904 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPR 260 (275)
Q Consensus 221 ~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~r 260 (275)
++.++.+..+.+|++..|+|..+..+.|...+......+.
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~ 161 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPD 161 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCC
Confidence 4566666778999999999999999999888877643333
No 49
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=39.04 E-value=31 Score=25.34 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q 023904 16 IPFVCLFCFALGILFSN 32 (275)
Q Consensus 16 ~~~~~~~~~~~~~~~~~ 32 (275)
++++|++|+.+|.+++-
T Consensus 42 ~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 42 VVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 35889999999998763
No 50
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=38.08 E-value=56 Score=31.55 Aligned_cols=44 Identities=14% Similarity=0.317 Sum_probs=32.2
Q ss_pred HHHHHHhhcCCccEEEEeCCceEEehH---HHHHHHhccCCCCceEE
Q 023904 220 IFFSTAVAKWDADFYVKVDDDVHVNLG---MLATTLSRHRSKPRVYI 263 (275)
Q Consensus 220 ~~f~wa~~~~~a~F~lKvDDDvfVnl~---~L~~~L~~~~~~~rlY~ 263 (275)
.++.|+.+..++++++-+|||..+.++ -+...|..+...++++.
T Consensus 87 ~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ 133 (334)
T cd02514 87 WALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWC 133 (334)
T ss_pred HHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEE
Confidence 366676665689999999999999998 55666655555555554
No 51
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=37.23 E-value=3.6e+02 Score=25.35 Aligned_cols=87 Identities=8% Similarity=0.074 Sum_probs=50.2
Q ss_pred cEEEEEEeecCCCCCchhHHHHHHHHhhCCC-EEEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHH
Q 023904 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKD-FLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLA 249 (275)
Q Consensus 171 ~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~D-IL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~ 249 (275)
.+.+.+|-..|. |+. .+.+.+-.+.+++ ++......++. |.- ++..+.++.+.+|++-.|+|.-.+++.+.
T Consensus 38 ~~EIIvVDDgS~--D~T-~~il~~~~~~~~~~v~~i~~~~n~G----~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i~ 109 (325)
T PRK10714 38 EYEILLIDDGSS--DNS-AEMLVEAAQAPDSHIVAILLNRNYG----QHS-AIMAGFSHVTGDLIITLDADLQNPPEEIP 109 (325)
T ss_pred CEEEEEEeCCCC--CcH-HHHHHHHHhhcCCcEEEEEeCCCCC----HHH-HHHHHHHhCCCCEEEEECCCCCCCHHHHH
Confidence 467777766553 232 2223332334444 44444444332 111 22333344578999999999999999998
Q ss_pred HHHhccCCCCceEEEE
Q 023904 250 TTLSRHRSKPRVYIGC 265 (275)
Q Consensus 250 ~~L~~~~~~~rlY~G~ 265 (275)
.+++.......+-.|.
T Consensus 110 ~l~~~~~~~~DvV~~~ 125 (325)
T PRK10714 110 RLVAKADEGYDVVGTV 125 (325)
T ss_pred HHHHHHHhhCCEEEEE
Confidence 8888764434455554
No 52
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=37.06 E-value=2.4e+02 Score=23.21 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=27.5
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHhcc
Q 023904 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH 255 (275)
Q Consensus 222 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 255 (275)
+.++.+....+|++..|+|..+..+.|...++..
T Consensus 75 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 75 TNSALELATGEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred HHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHH
Confidence 4455555678999999999999998888888765
No 53
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=35.99 E-value=2.5e+02 Score=23.13 Aligned_cols=75 Identities=8% Similarity=0.037 Sum_probs=44.0
Q ss_pred chhHHHHHHHHhhCCCEEEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccCC--CCceEE
Q 023904 186 SILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRS--KPRVYI 263 (275)
Q Consensus 186 ~~l~~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~--~~rlY~ 263 (275)
+.+...+.+-.+++. +..+...++. .+. .++..+....+.+|++..|+|.++.++.|...+..... .-.++.
T Consensus 42 d~t~~~~~~~~~~~~-i~~i~~~~n~----G~~-~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~ 115 (201)
T cd04195 42 QSLNEVLEEFKRKLP-LKVVPLEKNR----GLG-KALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVG 115 (201)
T ss_pred hhHHHHHHHHHhcCC-eEEEEcCccc----cHH-HHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEc
Confidence 444444444445555 5444433322 111 13444555568999999999999999988888876532 233555
Q ss_pred EEc
Q 023904 264 GCM 266 (275)
Q Consensus 264 G~~ 266 (275)
|.+
T Consensus 116 ~~~ 118 (201)
T cd04195 116 GGV 118 (201)
T ss_pred ccE
Confidence 543
No 54
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=35.78 E-value=1.8e+02 Score=21.60 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=25.2
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHhc
Q 023904 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSR 254 (275)
Q Consensus 222 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 254 (275)
+..+.+..+.+|++-+|+|..+.++.+...+..
T Consensus 69 ~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 69 RNAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 344444458999999999999999888886444
No 55
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=34.24 E-value=2.3e+02 Score=26.97 Aligned_cols=133 Identities=20% Similarity=0.253 Sum_probs=61.8
Q ss_pred CCCeeEEEEEECCCCChHHHHHHHhhhcccchhhhhhhcCCcEEEEEEeecCCC-CCchhHHHHHHHHhh---CCCEEEe
Q 023904 130 RPKVFVVIGINTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSAT-SNSILDKAIDSEDAQ---HKDFLRL 205 (275)
Q Consensus 130 ~~~~~lvI~V~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~-~~~~l~~~I~~E~~~---y~DIL~l 205 (275)
+++..++|||.|-.... -.-+..|=++--..+.. ++...+.|+-+++.+.. .-......|..+-.. -|=+..+
T Consensus 49 ~~~~~L~IGIpTV~R~~--~sYL~~TL~SLl~~ls~-~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI 125 (297)
T PF04666_consen 49 RTGKKLCIGIPTVKREK--ESYLLDTLASLLDGLSP-EERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVI 125 (297)
T ss_pred CCCCeEEEEecccccCC--CchHHHHHHHHHHhCCH-HHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEE
Confidence 45555999999966322 23444444432211111 22344555556665542 112222333322112 2333333
Q ss_pred cccccCC-c--------------chHHHHHHHHHHh--hc--CCccEEEEeCCceEEehHHH---HHHHhccCCCCceEE
Q 023904 206 EHIEGYH-E--------------LSAKTKIFFSTAV--AK--WDADFYVKVDDDVHVNLGML---ATTLSRHRSKPRVYI 263 (275)
Q Consensus 206 d~~DsY~-n--------------Lt~Ktl~~f~wa~--~~--~~a~F~lKvDDDvfVnl~~L---~~~L~~~~~~~rlY~ 263 (275)
.-..+|+ . ..+.++.-+.|+. .. ..++||+-..|||.....-+ ..++......+=+|+
T Consensus 126 ~~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~~~~~W~~L 205 (297)
T PF04666_consen 126 SPPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFLSRIKRFVEAWESKDWLYL 205 (297)
T ss_pred ecccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechhHHHHHHHHHHHhcCCCceEE
Confidence 3222322 1 1222333333332 21 37889999999998877643 344444433343554
Q ss_pred EE
Q 023904 264 GC 265 (275)
Q Consensus 264 G~ 265 (275)
.+
T Consensus 206 eF 207 (297)
T PF04666_consen 206 EF 207 (297)
T ss_pred Ee
Confidence 43
No 56
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=34.02 E-value=45 Score=21.07 Aligned_cols=23 Identities=22% Similarity=0.590 Sum_probs=20.2
Q ss_pred ccchhHHHHHHHHHHHHHHHhcC
Q 023904 11 ISTKWIPFVCLFCFALGILFSNL 33 (275)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~r 33 (275)
++--|+.++.+|+|-+.+.+=||
T Consensus 4 v~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 4 VSLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhccceeEEEec
Confidence 45679999999999999999887
No 57
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=33.64 E-value=3.2e+02 Score=23.77 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=32.2
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccC-CCCceEEEE
Q 023904 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR-SKPRVYIGC 265 (275)
Q Consensus 221 ~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~-~~~rlY~G~ 265 (275)
++..+...-..+|++..|+|..++++.|..++.... ....+.+|.
T Consensus 84 a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 129 (243)
T PLN02726 84 AYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGT 129 (243)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEc
Confidence 344444455789999999999999988888777543 234566664
No 58
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=32.31 E-value=32 Score=26.30 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHHHHHHhcCC
Q 023904 13 TKWIPFVCLFCFALGILFSNLT 34 (275)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~r~ 34 (275)
.-|++++-++|..||.+++++|
T Consensus 46 ~~~ii~iD~~Sl~aGf~~a~~m 67 (74)
T PF09964_consen 46 TWWIIFIDAVSLTAGFLYAKKM 67 (74)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999986
No 59
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=31.09 E-value=2.2e+02 Score=21.11 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=30.6
Q ss_pred CCCEEEecccccCCcchHHHHHHHHHHhh-cCCccEEEEeCCceEEehHH
Q 023904 199 HKDFLRLEHIEGYHELSAKTKIFFSTAVA-KWDADFYVKVDDDVHVNLGM 247 (275)
Q Consensus 199 y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~-~~~a~F~lKvDDDvfVnl~~ 247 (275)
+.++-...+...|..-... ...+....+ ..+++|++.+|-|=|+.++.
T Consensus 40 ~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 40 LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 4556566666666543333 233333333 36899999999999987765
No 60
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=30.18 E-value=63 Score=29.59 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=28.7
Q ss_pred CCccEEEEeCCceEEehHHHHHHHhccCCCCceEEEEc
Q 023904 229 WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCM 266 (275)
Q Consensus 229 ~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlY~G~~ 266 (275)
...+-++-+|||+.++.+.|..-+......+.-.+|+.
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~ 111 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFP 111 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCc
Confidence 36788999999999999999888887766666677764
No 61
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=29.77 E-value=1.1e+02 Score=25.70 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=26.9
Q ss_pred HHHhhcCCccEEEEeCCceEEehHHHHHHHhccCCC
Q 023904 223 STAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSK 258 (275)
Q Consensus 223 ~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~ 258 (275)
..+......+|++.+|+|..+..+.|...+......
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRAD 100 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcC
Confidence 334444568999999999999988888876655443
No 62
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=29.62 E-value=4.9e+02 Score=24.58 Aligned_cols=114 Identities=11% Similarity=-0.003 Sum_probs=68.2
Q ss_pred eeEEEEEECCCCCh-HHHHHHHhhhcccchhhhhhhcCCcEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEecccccC
Q 023904 133 VFVVIGINTAFSSR-KRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGY 211 (275)
Q Consensus 133 ~~lvI~V~Sap~~~-~rR~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~DsY 211 (275)
+.+-|.|.+.-... --.+.++..=... -....+..|...+ .+..-+.+.+-..++++.+...+. -
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d---------yp~~evivv~d~~---~d~~~~~~~~~~~~~~~~~~~~~~--~ 119 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD---------YPRYEVIVVDDGS---TDETYEILEELGAEYGPNFRVIYP--E 119 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC---------CCCceEEEECCCC---ChhHHHHHHHHHhhcCcceEEEec--c
Confidence 56666676666555 2333333332221 1225565566533 245555566666667644444422 0
Q ss_pred CcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccCCCCce
Q 023904 212 HELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRV 261 (275)
Q Consensus 212 ~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rl 261 (275)
.+...| ..++.|+...-+.+|++..|-|+.+..+.|...+......+..
T Consensus 120 ~~~~gK-~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~ 168 (439)
T COG1215 120 KKNGGK-AGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVG 168 (439)
T ss_pred ccCccc-hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCee
Confidence 121222 4466677776779999999999999999999999987654433
No 63
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=25.36 E-value=62 Score=22.58 Aligned_cols=16 Identities=13% Similarity=0.650 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 023904 16 IPFVCLFCFALGILFS 31 (275)
Q Consensus 16 ~~~~~~~~~~~~~~~~ 31 (275)
+++|++++|++|+.+-
T Consensus 4 V~lL~~~~l~iGlmIG 19 (47)
T PF11772_consen 4 VLLLAILALAIGLMIG 19 (47)
T ss_pred HHHHHHHHHHHHHHee
Confidence 6889999999998864
No 64
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=24.62 E-value=4e+02 Score=21.88 Aligned_cols=41 Identities=20% Similarity=0.109 Sum_probs=29.5
Q ss_pred HhhcCCccEEEEeCCceEEehHHHHHHHhc-c-CCCCceEEEE
Q 023904 225 AVAKWDADFYVKVDDDVHVNLGMLATTLSR-H-RSKPRVYIGC 265 (275)
Q Consensus 225 a~~~~~a~F~lKvDDDvfVnl~~L~~~L~~-~-~~~~rlY~G~ 265 (275)
+......+|++..|+|..+.++.|...+.. . .+...++.|.
T Consensus 74 g~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~ 116 (214)
T cd04196 74 LLQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSD 116 (214)
T ss_pred HHHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecC
Confidence 345578999999999999998888888876 2 2333444443
No 65
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=23.67 E-value=46 Score=27.30 Aligned_cols=15 Identities=20% Similarity=0.343 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHhc
Q 023904 18 FVCLFCFALGILFSN 32 (275)
Q Consensus 18 ~~~~~~~~~~~~~~~ 32 (275)
|++++-|++++++.+
T Consensus 9 i~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 9 IVAILLFLFLFYCHN 23 (130)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 66
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=22.87 E-value=4.7e+02 Score=22.15 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=28.7
Q ss_pred HHHHHhhcC--CccEEEEeCCceEEehHHHHHHHhccC
Q 023904 221 FFSTAVAKW--DADFYVKVDDDVHVNLGMLATTLSRHR 256 (275)
Q Consensus 221 ~f~wa~~~~--~a~F~lKvDDDvfVnl~~L~~~L~~~~ 256 (275)
++.++.+.. +.+|++..|+|+.+.++.|...+....
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 456666543 479999999999999999998887754
No 67
>PF04846 Herpes_pp38: Herpesvirus pp38 phosphoprotein; InterPro: IPR006930 Members of this family contain a conserved region found in most herpesvirus pp38 phosphoproteins.
Probab=22.40 E-value=67 Score=23.83 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=16.9
Q ss_pred ccchhHHHHHHHHHHHHHHHh
Q 023904 11 ISTKWIPFVCLFCFALGILFS 31 (275)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~ 31 (275)
+|.|..++=.-.+|+||+|+-
T Consensus 15 ~S~k~lv~Gscm~f~aG~LiG 35 (63)
T PF04846_consen 15 FSAKSLVLGSCMSFFAGTLIG 35 (63)
T ss_pred eecchhhHHHHHHHHHHHhcc
Confidence 477887777788999999873
No 68
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=21.57 E-value=5.5e+02 Score=25.88 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=54.2
Q ss_pred HHHHHhhhcccchhhhhhhcCCcEEEEEEeecCCCC------CchhHHHHH---HHHhhCCCEEEecc---cccCCcchH
Q 023904 149 RDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATS------NSILDKAID---SEDAQHKDFLRLEH---IEGYHELSA 216 (275)
Q Consensus 149 R~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~------~~~l~~~I~---~E~~~y~DIL~ld~---~DsY~nLt~ 216 (275)
=++-|+.|.........-. ...-+|+-|.|..+.+ +.-+++.+. .=++.||=-+..+. .+.......
T Consensus 105 wd~~R~~wl~~~p~~~~~~-~g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~~p~~Wa 183 (429)
T PLN03182 105 WDEQRRRWLRKNPGFPSFV-NGKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAEMAGFWA 183 (429)
T ss_pred HHHHHHHHHHhCCCCCCcc-CCCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcCCCcchh
Confidence 3566677775432111111 1223566677776531 222233332 22456774445453 223345567
Q ss_pred HHHHHHHHHhhcCCccEEEEeCCceEE
Q 023904 217 KTKIFFSTAVAKWDADFYVKVDDDVHV 243 (275)
Q Consensus 217 Ktl~~f~wa~~~~~a~F~lKvDDDvfV 243 (275)
|.-+..+...++|+++|+.=+|.|.++
T Consensus 184 KlpaLR~aM~~~PeaEWiWWLDsDALI 210 (429)
T PLN03182 184 KLPLLRKLMLAHPEVEWIWWMDSDALF 210 (429)
T ss_pred HHHHHHHHHHHCCCceEEEEecCCcee
Confidence 888888777889999999999999976
No 69
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=21.30 E-value=2.3e+02 Score=26.66 Aligned_cols=53 Identities=17% Similarity=0.136 Sum_probs=43.2
Q ss_pred CCCEEEecccccCCcchHHHHHHHHHHhhcC-CccE------EEEeCCceEEehHHHHHHHhcc
Q 023904 199 HKDFLRLEHIEGYHELSAKTKIFFSTAVAKW-DADF------YVKVDDDVHVNLGMLATTLSRH 255 (275)
Q Consensus 199 y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~-~a~F------~lKvDDDvfVnl~~L~~~L~~~ 255 (275)
+||++.+.-.++ +.||.+..+-+.+|- +.+| ++.+|=|..++.-+|...|+..
T Consensus 37 aG~~vEi~Gp~~----sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hr 96 (293)
T KOG2859|consen 37 AGTLVEISGPGN----SGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHR 96 (293)
T ss_pred cCcEEEEeCCCC----ccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHH
Confidence 899998765443 789999999988873 3333 8999999999999999998853
No 70
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=20.94 E-value=1.4e+02 Score=26.44 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=25.9
Q ss_pred CCccEEEEeCCceEEehHHHHHHHhccCCCCc
Q 023904 229 WDADFYVKVDDDVHVNLGMLATTLSRHRSKPR 260 (275)
Q Consensus 229 ~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~r 260 (275)
.+.+|++.+|.|+.+..+.|...+......++
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~ 103 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPE 103 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCC
Confidence 48999999999999999998888776533333
Done!