Query 023904
Match_columns 275
No_of_seqs 288 out of 1171
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:45:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.6 5.6E-15 1.9E-19 135.3 10.3 122 131-272 11-136 (280)
2 3bcv_A Putative glycosyltransf 82.1 17 0.00058 29.8 11.3 76 171-255 34-109 (240)
3 1xhb_A Polypeptide N-acetylgal 72.9 45 0.0015 30.9 12.4 77 173-256 63-140 (472)
4 2d7i_A Polypeptide N-acetylgal 64.5 59 0.002 31.4 11.7 84 173-263 146-229 (570)
5 4fix_A UDP-galactofuranosyl tr 62.9 67 0.0023 32.0 12.0 47 220-266 258-306 (657)
6 1qg8_A Protein (spore coat pol 60.6 69 0.0024 26.3 14.4 89 171-265 30-125 (255)
7 2z86_A Chondroitin synthase; G 52.5 1.3E+02 0.0045 28.8 11.8 76 171-255 404-479 (625)
8 2ffu_A Ppgalnact-2, polypeptid 50.2 1.1E+02 0.0039 28.5 10.8 56 196-256 117-172 (501)
9 2z86_A Chondroitin synthase; G 38.9 2.6E+02 0.009 26.6 11.6 35 222-256 166-200 (625)
10 1vf5_H Protein PET N; photosyn 31.9 28 0.00097 21.1 2.0 23 11-33 4-26 (29)
11 2lnd_A De novo designed protei 30.5 93 0.0032 23.5 5.2 71 139-227 31-104 (112)
12 1q90_N Cytochrome B6F complex 28.1 29 0.00098 21.4 1.6 23 11-33 6-28 (31)
13 1omz_A Alpha-1,4-N-acetylhexos 23.4 74 0.0025 28.9 4.3 38 229-266 105-142 (293)
14 4hg6_A Cellulose synthase subu 22.7 5.9E+02 0.02 25.6 12.1 40 215-255 224-263 (802)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.57 E-value=5.6e-15 Score=135.33 Aligned_cols=122 Identities=22% Similarity=0.293 Sum_probs=86.0
Q ss_pred CCeeEEEEEECCCCC-hHHHHHHHhhhcccchhhhhhhcCCcEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEeccc-
Q 023904 131 PKVFVVIGINTAFSS-RKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHI- 208 (275)
Q Consensus 131 ~~~~lvI~V~Sap~~-~~rR~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~- 208 (275)
..-.++|+|+|++.+ ..|+.+||+||++... . . .||.+... +..+. .. ..++++..++.
T Consensus 11 ~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~--------~-~--~fifsd~~--d~~l~----~~--~~~~~~~~~~~~ 71 (280)
T 2j0a_A 11 QLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIR--------Q-Q--TFIFTDSP--DERLQ----ER--LGPHLVVTQCSA 71 (280)
T ss_dssp CGGGEEEEEECCGGGTTTTHHHHHHTGGGGSG--------G-G--EEEEESSC--CHHHH----HH--HGGGEEECCC--
T ss_pred CcccEEEEEECcHHHHHHHHHHHHHHHhccCC--------C-c--eEEEcCCC--ccccc----cc--ccccceeccccc
Confidence 445788999999984 4688999999998652 1 1 24333332 23332 11 24578887764
Q ss_pred -ccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccCCCCceEEEEcc-ccccc
Q 023904 209 -EGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCMK-SGPVL 272 (275)
Q Consensus 209 -DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlY~G~~~-sgPV~ 272 (275)
+++.+++.|+...+.|.. ..+++|++|+|||+|||+++|+.+|..+++.+++|+|+.. .+|++
T Consensus 72 ~~~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~ 136 (280)
T 2j0a_A 72 EHSHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIH 136 (280)
T ss_dssp -----CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC-----
T ss_pred cccccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCcccc
Confidence 467789999999998764 3699999999999999999999999999999999999865 44654
No 2
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=82.13 E-value=17 Score=29.76 Aligned_cols=76 Identities=16% Similarity=0.097 Sum_probs=45.5
Q ss_pred cEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHH
Q 023904 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (275)
Q Consensus 171 ~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 250 (275)
.+.++.|-..+. +...+.+.+-.+++..|..+. .+ |.. .-.+...+.+....+|++.+|+|.++.++.|..
T Consensus 34 ~~eiIvvDd~S~---d~t~~~~~~~~~~~~~i~~i~-~~---n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~ 104 (240)
T 3bcv_A 34 DIEIILIDDESP---DNCPKICDDYAAQYPNIKVIH-KK---NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYMT 104 (240)
T ss_dssp SEEEEEEECCCS---SSHHHHHHHHHHHCSSEEEEE-CC---CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHH
T ss_pred CeEEEEEECCCC---cCHHHHHHHHHhhCCCEEEEE-CC---CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHH
Confidence 455555544332 223334444445666776654 22 221 122344555556889999999999999888877
Q ss_pred HHhcc
Q 023904 251 TLSRH 255 (275)
Q Consensus 251 ~L~~~ 255 (275)
.+...
T Consensus 105 l~~~~ 109 (240)
T 3bcv_A 105 MYNVA 109 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=72.89 E-value=45 Score=30.91 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=45.7
Q ss_pred EEEEEeecCCCCCchhHHHHHHHHhhCC-CEEEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHH
Q 023904 173 IIRFMIGHSATSNSILDKAIDSEDAQHK-DFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATT 251 (275)
Q Consensus 173 ~v~FVvG~s~~~~~~l~~~I~~E~~~y~-DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~ 251 (275)
.++.|-..|. ++.....+++-.+.+. .+..+...++.. + -.+...+.+....+|++..|+|+.+.++-|..+
T Consensus 63 EIIvVDd~S~--d~~t~~~l~~~~~~~~~~v~vi~~~~n~G-~----~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~l 135 (472)
T 1xhb_A 63 EIVLVDDASE--RDFLKRPLESYVKKLKVPVHVIRMEQRSG-L----IRARLKGAAVSRGQVITFLDAHCECTAGWLEPL 135 (472)
T ss_dssp EEEEEECSCC--CGGGTHHHHHHHHSSSSCEEEEECSSCCC-H----HHHHHHHHHHCCSSEEEEEESSEEECTTCHHHH
T ss_pred EEEEEECCCC--cHHHHHHHHHHHHHCCCcEEEEECCCCCC-h----HHHHHHHHHhccCCeEEEECCCeEeCccHHHHH
Confidence 4444443332 3334444555455666 465555443321 1 223344445567999999999999999888877
Q ss_pred HhccC
Q 023904 252 LSRHR 256 (275)
Q Consensus 252 L~~~~ 256 (275)
+....
T Consensus 136 l~~~~ 140 (472)
T 1xhb_A 136 LARIK 140 (472)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 4
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=64.51 E-value=59 Score=31.41 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=47.7
Q ss_pred EEEEEeecCCCCCchhHHHHHHHHhhCCCEEEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHH
Q 023904 173 IIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTL 252 (275)
Q Consensus 173 ~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L 252 (275)
.++.|-..|. ++.+...+++-.+.+..|-.+...+.. .+..= ...+.+....+|++..|+|+.+.++-|..++
T Consensus 146 EIIVVDDgS~--D~tl~~~l~~~~~~~~~v~vi~~~~n~-G~~~A----~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll 218 (570)
T 2d7i_A 146 EIVLVDDFSD--REHLKKPLEDYMALFPSVRILRTKKRE-GLIRT----RMLGASVATGDVITFLDSHCEANVNWLPPLL 218 (570)
T ss_dssp EEEEEECSCC--CGGGTHHHHHHHTTSTTEEEEECSSCC-CHHHH----HHHHHHHCCSSEEEECCSSEEECTTCSHHHH
T ss_pred EEEEEECCCC--cHHHHHHHHHHHHhCCeEEEEECCCCC-CHHHH----HHHHHHhcCCCEEEEEcCCccccccHHHHHH
Confidence 4444443332 344345555555667666665544332 22222 3333344578999999999999988777766
Q ss_pred hccCCCCceEE
Q 023904 253 SRHRSKPRVYI 263 (275)
Q Consensus 253 ~~~~~~~rlY~ 263 (275)
......+.+.+
T Consensus 219 ~~l~~~~~~vv 229 (570)
T 2d7i_A 219 DRIARNRKTIV 229 (570)
T ss_dssp HHHHHCTTEEE
T ss_pred HHHHhCCCEEE
Confidence 65433333333
No 5
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=62.87 E-value=67 Score=32.01 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=33.4
Q ss_pred HHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccC--CCCceEEEEc
Q 023904 220 IFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR--SKPRVYIGCM 266 (275)
Q Consensus 220 ~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~--~~~rlY~G~~ 266 (275)
.+++.|....+++|++..|||+.+.++.|..++.... +...+..|.+
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~i 306 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQM 306 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEE
Confidence 4666666555899999999999999988888776543 2333444444
No 6
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=60.56 E-value=69 Score=26.27 Aligned_cols=89 Identities=8% Similarity=-0.035 Sum_probs=50.1
Q ss_pred cEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEecccccC-----CcchHHHHHHHHHHhhcCCccEEEEeCCceEEeh
Q 023904 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGY-----HELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNL 245 (275)
Q Consensus 171 ~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~DsY-----~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl 245 (275)
.+.++.|-..+. +.. ..+.++...+..|..+.....- .|.. .-.++..+.+..+.+|++..|||.++.+
T Consensus 30 ~~eiivvDd~S~---d~t-~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G--~~~a~N~gi~~a~g~~i~~lD~Dd~~~~ 103 (255)
T 1qg8_A 30 DFELFIMDDNSN---EET-LNVIRPFLNDNRVRFYQSDISGVKERTEKTR--YAALINQAIEMAEGEYITYATDDNIYMP 103 (255)
T ss_dssp CEEEEEEECSCC---HHH-HHHHGGGGGSTTEEEEECCCCSHHHHHSSCH--HHHHHHHHHHHCCCSEEEEEETTEEECT
T ss_pred ceEEEEEECCCC---chH-HHHHHHHhhcCCEEEEecccccccccccccC--HHHHHHHHHHHcCCCEEEEeCCCCccCh
Confidence 455555554332 332 2344454445566554432100 2321 2334556666678999999999999998
Q ss_pred HHHHHHHhccC--CCCceEEEE
Q 023904 246 GMLATTLSRHR--SKPRVYIGC 265 (275)
Q Consensus 246 ~~L~~~L~~~~--~~~rlY~G~ 265 (275)
+.|...+.... +...+..|.
T Consensus 104 ~~l~~~~~~~~~~~~~~~v~~~ 125 (255)
T 1qg8_A 104 DRLLKMVRELDTHPEKAVIYSA 125 (255)
T ss_dssp THHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHHHHhCCCceEEEec
Confidence 88877776543 333455444
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=52.47 E-value=1.3e+02 Score=28.78 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=44.5
Q ss_pred cEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHH
Q 023904 171 GIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLAT 250 (275)
Q Consensus 171 ~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~ 250 (275)
.+.++.|-..|. ++ ..+.+.+-...+..+..+. .+ |.. .-.++..+.+....+|++..|+|.++.++.|..
T Consensus 404 ~~eiivvdd~S~--d~-t~~~~~~~~~~~~~i~~~~-~~---n~G--~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~ 474 (625)
T 2z86_A 404 DLEVCICDDGST--DD-TLRILQEHYANHPRVRFIS-QK---NKG--IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVEL 474 (625)
T ss_dssp SEEEEEEEESCS--SS-HHHHHHHHHTTCTTEEEEE-EC---CCC--HHHHHHHHHHHCCSSEEEECCTTCEECTTHHHH
T ss_pred CeEEEEEECcCC--hh-HHHHHHHHHhhCCcEEEEe-CC---CCC--HHHHHHHHHHhcCCCEEEEECCCcccChhHHHH
Confidence 355555554442 23 3333444344566665553 22 221 122344555556889999999999999988887
Q ss_pred HHhcc
Q 023904 251 TLSRH 255 (275)
Q Consensus 251 ~L~~~ 255 (275)
.+...
T Consensus 475 ~~~~~ 479 (625)
T 2z86_A 475 CLDEF 479 (625)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 8
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=50.21 E-value=1.1e+02 Score=28.47 Aligned_cols=56 Identities=13% Similarity=-0.047 Sum_probs=36.8
Q ss_pred HhhCCCEEEecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhccC
Q 023904 196 DAQHKDFLRLEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR 256 (275)
Q Consensus 196 ~~~y~DIL~ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 256 (275)
.+.+..+-.+...+.. - + -.++..+.+....+|++..|+|+.+.++-|..++....
T Consensus 117 ~~~~~~v~vi~~~~n~---G-~-~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~ 172 (501)
T 2ffu_A 117 LGKIEKVRVLRNDRRE---G-L-MRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVA 172 (501)
T ss_dssp GGGBTTEEEEECSSCC---H-H-HHHHHHHHHHCCSSEEEECCSSEEECTTCHHHHHHHHH
T ss_pred HhcCCCEEEEECCCCc---C-H-HHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHH
Confidence 3456666655543332 1 1 23444455556899999999999999888887777653
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=38.93 E-value=2.6e+02 Score=26.59 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=27.3
Q ss_pred HHHHhhcCCccEEEEeCCceEEehHHHHHHHhccC
Q 023904 222 FSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRHR 256 (275)
Q Consensus 222 f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~ 256 (275)
+..+.+....+|++..|+|+.+.++.|..++....
T Consensus 166 ~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~ 200 (625)
T 2z86_A 166 RNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLA 200 (625)
T ss_dssp HHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHH
T ss_pred HHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHh
Confidence 34445556889999999999999888887777653
No 10
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=31.90 E-value=28 Score=21.08 Aligned_cols=23 Identities=9% Similarity=0.433 Sum_probs=20.0
Q ss_pred ccchhHHHHHHHHHHHHHHHhcC
Q 023904 11 ISTKWIPFVCLFCFALGILFSNL 33 (275)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~r 33 (275)
++--|+.++.+|+|-+.+.+=||
T Consensus 4 vsl~WaalmvvftfSlslVVWGR 26 (29)
T 1vf5_H 4 DVLGWVALLVVFTWSIAMVVWGR 26 (29)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhheeeeEEEEec
Confidence 56679999999999999988776
No 11
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.46 E-value=93 Score=23.47 Aligned_cols=71 Identities=27% Similarity=0.332 Sum_probs=43.7
Q ss_pred EECCCCChHHHHHHHhhhcccchhhhhhhcCCcEEEEEEeecCCCCCchhHHHHHHHHhhCC---CEEEecccccCCcch
Q 023904 139 INTAFSSRKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHSATSNSILDKAIDSEDAQHK---DFLRLEHIEGYHELS 215 (275)
Q Consensus 139 V~Sap~~~~rR~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~---DIL~ld~~DsY~nLt 215 (275)
|.|+.++..-|+.|...=-+ ++ -.++||-|.+.| .. ...+.|+++.| |++- .-..++|+
T Consensus 31 irtatssqdirdiiksmkdn----------gk-plvvfvngasqn---dv-nefqneakkegvsydvlk---stdpeelt 92 (112)
T 2lnd_A 31 IRTATSSQDIRDIIKSMKDN----------GK-PLVVFVNGASQN---DV-NEFQNEAKKEGVSYDVLK---STDPEELT 92 (112)
T ss_dssp EEEECSHHHHHHHHHHHTTC----------CS-CEEEEECSCCHH---HH-HHHHHHHHHHTCEEEEEE---CCCHHHHH
T ss_pred eeeccchhhHHHHHHHHHhc----------CC-eEEEEecCcccc---cH-HHHHHHHHhcCcchhhhc---cCCHHHHH
Confidence 55666777777777543221 22 346799998864 22 23456666655 3333 22345789
Q ss_pred HHHHHHHHHHhh
Q 023904 216 AKTKIFFSTAVA 227 (275)
Q Consensus 216 ~Ktl~~f~wa~~ 227 (275)
..+..+++.+-.
T Consensus 93 qrvreflktags 104 (112)
T 2lnd_A 93 QRVREFLKTAGS 104 (112)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHhccc
Confidence 999999988764
No 12
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=28.06 E-value=29 Score=21.37 Aligned_cols=23 Identities=17% Similarity=0.509 Sum_probs=20.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhcC
Q 023904 11 ISTKWIPFVCLFCFALGILFSNL 33 (275)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~r 33 (275)
++--|+.++.+|+|-+.+.+=||
T Consensus 6 vsl~WaalmvvfTfSlslVVWGR 28 (31)
T 1q90_N 6 VQIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHhheeeEEEEEec
Confidence 46679999999999999998877
No 13
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=23.43 E-value=74 Score=28.91 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=30.3
Q ss_pred CCccEEEEeCCceEEehHHHHHHHhccCCCCceEEEEc
Q 023904 229 WDADFYVKVDDDVHVNLGMLATTLSRHRSKPRVYIGCM 266 (275)
Q Consensus 229 ~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~rlY~G~~ 266 (275)
...+-|+-+|||+.++.+.|..-+.-.+..|.-.+|+.
T Consensus 105 i~T~AVLslDDDv~l~~~el~faF~vWr~~PdRlVGf~ 142 (293)
T 1omz_A 105 VETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFV 142 (293)
T ss_dssp CCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESC
T ss_pred CCcCEEEEEcCCCCCCHHHHHHHHHHHHHCccceecCc
Confidence 37888999999999999999877776665555566664
No 14
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=22.73 E-value=5.9e+02 Score=25.55 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcc
Q 023904 215 SAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH 255 (275)
Q Consensus 215 t~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 255 (275)
..|.- .+..+.+..+.+|++.+|+|+.+.++.|...+...
T Consensus 224 ~GKa~-alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~ 263 (802)
T 4hg6_A 224 HAKAG-NMSAALERLKGELVVVFDADHVPSRDFLARTVGYF 263 (802)
T ss_dssp SHHHH-HHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHH
T ss_pred CcchH-HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHH
Confidence 34443 45666666789999999999999999888887765
Done!