Query 023904
Match_columns 275
No_of_seqs 288 out of 1171
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 14:45:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023904.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023904hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omza_ c.68.1.15 (A:) Alpha-1 60.7 4.5 0.00033 30.2 4.5 37 224-260 75-111 (265)
2 d1q90n_ f.23.27.1 (N:) PetN su 50.2 4.7 0.00035 23.0 2.1 22 12-33 7-28 (31)
3 d1xhba2 c.68.1.17 (A:95-422) P 45.1 70 0.0051 25.5 12.0 66 185-255 66-132 (328)
4 d1qg8a_ c.68.1.1 (A:) Spore co 31.6 41 0.003 25.8 6.0 34 221-254 79-112 (255)
5 d1fo8a_ c.68.1.10 (A:) N-acety 13.7 59 0.0043 28.0 3.4 47 217-263 82-135 (343)
6 d2e74h1 f.23.27.1 (H:3-29) Pet 13.3 76 0.0055 17.1 2.6 20 14-33 5-24 (27)
7 d1s4na_ c.68.1.16 (A:) Glycoli 12.8 38 0.0027 29.3 1.8 26 230-255 136-164 (339)
8 d1owxa_ d.58.7.1 (A:) Lupus LA 11.0 1.2E+02 0.009 20.7 4.1 40 167-209 6-45 (113)
9 d2hy5a1 c.114.1.1 (A:1-130) Su 10.4 1.4E+02 0.0098 21.2 4.2 41 134-181 2-43 (130)
10 d1jb0j_ f.23.18.1 (J:) Subunit 9.8 1.1E+02 0.0083 18.2 2.8 28 11-38 8-36 (41)
No 1
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=60.75 E-value=4.5 Score=30.23 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=29.2
Q ss_pred HHhhcCCccEEEEeCCceEEehHHHHHHHhccCCCCc
Q 023904 224 TAVAKWDADFYVKVDDDVHVNLGMLATTLSRHRSKPR 260 (275)
Q Consensus 224 wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~~~~~r 260 (275)
.+.+..+.+|++..|||..+..+.|...++.....+.
T Consensus 75 ~~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~ 111 (265)
T d1omza_ 75 QVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPD 111 (265)
T ss_dssp SCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTT
T ss_pred hhHHhCCcCEEEEeCcccCCCHHHHHHHHHHHHhCCC
Confidence 3444558899999999999999998888887655443
No 2
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=50.19 E-value=4.7 Score=23.02 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=19.0
Q ss_pred cchhHHHHHHHHHHHHHHHhcC
Q 023904 12 STKWIPFVCLFCFALGILFSNL 33 (275)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~r 33 (275)
.--|..++++|||-+.+.+-||
T Consensus 7 ~~awaa~~atfsfslslvvwgr 28 (31)
T d1q90n_ 7 QIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EhHHHHHHHhheeeEEEEEEec
Confidence 3468999999999999998877
No 3
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=45.13 E-value=70 Score=25.52 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=39.6
Q ss_pred CchhHHHHHHHHhhCCCEEE-ecccccCCcchHHHHHHHHHHhhcCCccEEEEeCCceEEehHHHHHHHhcc
Q 023904 185 NSILDKAIDSEDAQHKDFLR-LEHIEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRH 255 (275)
Q Consensus 185 ~~~l~~~I~~E~~~y~DIL~-ld~~DsY~nLt~Ktl~~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~~ 255 (275)
++.....+++-.+++.+-+. +...++. ..+ .+...+.+....+|++.+|+|+.+.++.|...+...
T Consensus 66 d~~~~~~l~~~~~~~~~~i~vi~~~~n~-G~~----~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~~~ 132 (328)
T d1xhba2 66 RDFLKRPLESYVKKLKVPVHVIRMEQRS-GLI----RARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARI 132 (328)
T ss_dssp CGGGTHHHHHHHHSSSSCEEEEECSSCC-CHH----HHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHhcCCCeEEEEecccc-cch----HHHHHHHHhhhcceeeecCcccccChhHHHHHHHHH
Confidence 44444444444555665443 3332222 222 234555566789999999999999998877766543
No 4
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=31.61 E-value=41 Score=25.79 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=25.1
Q ss_pred HHHHHhhcCCccEEEEeCCceEEehHHHHHHHhc
Q 023904 221 FFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSR 254 (275)
Q Consensus 221 ~f~wa~~~~~a~F~lKvDDDvfVnl~~L~~~L~~ 254 (275)
++..+.+..+.+|++..|+|.++.++.|...++.
T Consensus 79 a~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~ 112 (255)
T d1qg8a_ 79 LINQAIEMAEGEYITYATDDNIYMPDRLLKMVRE 112 (255)
T ss_dssp HHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHH
T ss_pred cccccccccccccccccccccccccchHHHHHHH
Confidence 3445555568999999999999998766655443
No 5
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=13.65 E-value=59 Score=27.98 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=28.9
Q ss_pred HHHHHHHHHhh----cCCccEEEEeCCceEEehHHHH---HHHhccCCCCceEE
Q 023904 217 KTKIFFSTAVA----KWDADFYVKVDDDVHVNLGMLA---TTLSRHRSKPRVYI 263 (275)
Q Consensus 217 Ktl~~f~wa~~----~~~a~F~lKvDDDvfVnl~~L~---~~L~~~~~~~rlY~ 263 (275)
+....+.||.+ ...++.++-+.||..+.++-+- ..|..+...++++.
T Consensus 82 giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~~l~~~~~D~~i~~ 135 (343)
T d1fo8a_ 82 KIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWC 135 (343)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHHHHHHhcccCCceEEEEecCceeeHHHHHHHHHHHHHHhcCCCEEE
Confidence 33334455554 4467999999999999987663 33333333445544
No 6
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.30 E-value=76 Score=17.07 Aligned_cols=20 Identities=10% Similarity=0.599 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHhcC
Q 023904 14 KWIPFVCLFCFALGILFSNL 33 (275)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~r 33 (275)
-|+.+|.+|..-..|.+-||
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 48899999999888888777
No 7
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.81 E-value=38 Score=29.33 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=19.7
Q ss_pred CccEEEEeCCceEEeh---HHHHHHHhcc
Q 023904 230 DADFYVKVDDDVHVNL---GMLATTLSRH 255 (275)
Q Consensus 230 ~a~F~lKvDDDvfVnl---~~L~~~L~~~ 255 (275)
+++||+++|||+++.= -.+..+++.+
T Consensus 136 ~YdYywRvdpD~~f~cdI~yD~F~~M~~n 164 (339)
T d1s4na_ 136 EYDWYWRVEPDIKLYCDINYDVFKWMQEN 164 (339)
T ss_dssp TCSEEEECCTTCEECSCCCSCHHHHHHHT
T ss_pred ccceEEEeCCCcEEecCCCCCHHHHHhhc
Confidence 8999999999998742 2455677765
No 8
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.03 E-value=1.2e+02 Score=20.73 Aligned_cols=40 Identities=10% Similarity=0.209 Sum_probs=29.1
Q ss_pred hcCCcEEEEEEeecCCCCCchhHHHHHHHHhhCCCEEEecccc
Q 023904 167 EREKGIIIRFMIGHSATSNSILDKAIDSEDAQHKDFLRLEHIE 209 (275)
Q Consensus 167 e~~~~v~v~FVvG~s~~~~~~l~~~I~~E~~~y~DIL~ld~~D 209 (275)
+...|..++||=+.+. ......|.+--.+||+|..+++..
T Consensus 6 ~~~~g~~~~fvgnL~~---~~tee~Lk~~F~~fG~V~~v~i~~ 45 (113)
T d1owxa_ 6 EEKIGCLLKFSGDLDD---QTCREDLHILFSNHGEIKWIDFVR 45 (113)
T ss_dssp SCCCCCEEEEEESCCS---SCCHHHHHHHTCSSCCEEEEECCT
T ss_pred CCCCCCeEEEECCCCC---CCCHHHHHHHHHhcCChheEEEec
Confidence 4567777777766654 344566788889999999998764
No 9
>d2hy5a1 c.114.1.1 (A:1-130) Sulfurtransferase DsrE {Chromatium vinosum [TaxId: 1049]}
Probab=10.39 E-value=1.4e+02 Score=21.20 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=25.4
Q ss_pred eEEEEEECCCCC-hHHHHHHHhhhcccchhhhhhhcCCcEEEEEEeecC
Q 023904 134 FVVIGINTAFSS-RKRRDSVRDTWMPQGEKLIQLEREKGIIIRFMIGHS 181 (275)
Q Consensus 134 ~lvI~V~Sap~~-~~rR~aIR~TW~~~~~~l~kLe~~~~v~v~FVvG~s 181 (275)
.++|+|.++|.. ..-+.++| ++... ++.+..|..+|+.|..
T Consensus 2 k~~i~v~~~P~~~~~a~~al~--fA~aa-----l~~gh~V~~vFf~~dG 43 (130)
T d2hy5a1 2 KFALQINEGPYQHQASDSAYQ--FAKAA-----LEKGHEIFRVFFYHDG 43 (130)
T ss_dssp EEEEEECSCTTTSTHHHHHHH--HHHHH-----HHTTCEEEEEEECGGG
T ss_pred EEEEEEcCCCCCcHHHHHHHH--HHHHH-----HHCCCeEEEEEEecch
Confidence 467889999954 45667777 33321 3334556446888764
No 10
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=9.76 E-value=1.1e+02 Score=18.22 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=21.5
Q ss_pred ccchhHHHHHHHHHHHHHHH-hcCCCCCC
Q 023904 11 ISTKWIPFVCLFCFALGILF-SNLTWNPP 38 (275)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~r~w~~~ 38 (275)
+|+-.++...-++|.||+++ .||+..++
T Consensus 8 lstAPVla~~w~~~tAG~lIEiNRFfPD~ 36 (41)
T d1jb0j_ 8 LSTAPVLAAIWMTITAGILIEFNRFYPDL 36 (41)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 46667888888899999986 57877664
Done!