Your job contains 1 sequence.
>023905
MPISSLSPIGHCPPSLSLKCNFPFRPTRKASILASPKQPLIFTTKRTTTHIVSMSYEAGI
GVMGTKLGMMSYFEPDGTVVPVTVVGFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLT
KPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQG
GIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKID
NDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPKN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023905
(275 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2053713 - symbol:AT2G43030 species:3702 "Arabi... 948 2.6e-95 1
TIGR_CMR|CHY_2309 - symbol:CHY_2309 "ribosomal protein L3... 449 1.9e-42 1
TIGR_CMR|BA_0110 - symbol:BA_0110 "ribosomal protein L3" ... 430 2.0e-40 1
UNIPROTKB|Q9KNY4 - symbol:rplC "50S ribosomal protein L3"... 429 2.6e-40 1
TIGR_CMR|VC_2596 - symbol:VC_2596 "ribosomal protein L3" ... 429 2.6e-40 1
UNIPROTKB|P42920 - symbol:rplC "50S ribosomal protein L3"... 427 4.2e-40 1
TIGR_CMR|GSU_2857 - symbol:GSU_2857 "ribosomal protein L3... 414 9.9e-39 1
TIGR_CMR|CPS_0873 - symbol:CPS_0873 "ribosomal protein L3... 410 2.6e-38 1
UNIPROTKB|P60442 - symbol:rplC "50S ribosomal protein L3"... 407 5.5e-38 1
UNIPROTKB|P60438 - symbol:rplC "50S ribosomal subunit pro... 404 1.1e-37 1
TIGR_CMR|SO_0231 - symbol:SO_0231 "ribosomal protein L3" ... 396 8.0e-37 1
TIGR_CMR|CBU_0238 - symbol:CBU_0238 "ribosomal protein L3... 387 7.2e-36 1
DICTYBASE|DDB_G0288983 - symbol:mrpl3 "ribosomal protein ... 380 4.0e-35 1
TIGR_CMR|SPO_3825 - symbol:SPO_3825 "ribosomal protein L3... 339 8.8e-31 1
TIGR_CMR|DET_0474 - symbol:DET_0474 "ribosomal protein L3... 335 2.3e-30 1
TAIR|locus:2093586 - symbol:RPL3P "ribosomal protein L3 p... 320 9.1e-29 1
ASPGD|ASPL0000071039 - symbol:AN4308 species:162425 "Emer... 313 5.0e-28 1
SGD|S000003452 - symbol:MRPL9 "Mitochondrial ribosomal pr... 308 1.7e-27 1
TIGR_CMR|APH_0280 - symbol:APH_0280 "ribosomal protein L3... 306 2.8e-27 1
POMBASE|SPAC644.17c - symbol:mrpl9 "mitochondrial ribosom... 301 9.4e-27 1
TIGR_CMR|ECH_0409 - symbol:ECH_0409 "ribosomal protein L3... 290 1.4e-25 1
CGD|CAL0005707 - symbol:orf19.7485 species:5476 "Candida ... 272 1.1e-23 1
ZFIN|ZDB-GENE-030131-8227 - symbol:mrpl3 "mitochondrial r... 266 4.8e-23 1
UNIPROTKB|E7ETU7 - symbol:MRPL3 "39S ribosomal protein L3... 261 1.6e-22 1
UNIPROTKB|H0Y9G6 - symbol:MRPL3 "39S ribosomal protein L3... 261 1.6e-22 1
UNIPROTKB|P09001 - symbol:MRPL3 "39S ribosomal protein L3... 261 1.6e-22 1
FB|FBgn0030686 - symbol:mRpL3 "mitochondrial ribosomal pr... 254 9.0e-22 1
UNIPROTKB|F1NVG6 - symbol:MRPL3 "Uncharacterized protein"... 251 1.9e-21 1
TIGR_CMR|NSE_0266 - symbol:NSE_0266 "ribosomal protein L3... 245 8.0e-21 1
UNIPROTKB|Q3ZBX6 - symbol:MRPL3 "39S ribosomal protein L3... 241 2.1e-20 1
UNIPROTKB|E2R429 - symbol:MRPL3 "Uncharacterized protein"... 240 2.7e-20 1
UNIPROTKB|K7GPJ6 - symbol:LOC100156322 "Uncharacterized p... 240 2.7e-20 1
MGI|MGI:2137204 - symbol:Mrpl3 "mitochondrial ribosomal p... 237 5.7e-20 1
UNIPROTKB|F1RX24 - symbol:LOC100156322 "Uncharacterized p... 240 6.0e-20 1
TIGR_CMR|CJE_1875 - symbol:CJE_1875 "ribosomal protein L3... 218 5.8e-18 1
RGD|1306391 - symbol:Mrpl3 "mitochondrial ribosomal prote... 216 1.5e-17 1
UNIPROTKB|P18665 - symbol:Mrpl3 "39S ribosomal protein L3... 216 1.5e-17 1
GENEDB_PFALCIPARUM|PFL2180w - symbol:PFL2180w "50S riboso... 206 2.0e-16 1
UNIPROTKB|Q8I4X7 - symbol:PFL2180w "Mitochondrial ribosom... 206 2.0e-16 1
WB|WBGene00016142 - symbol:mrps-18C species:6239 "Caenorh... 206 4.0e-16 1
UNIPROTKB|D6RC14 - symbol:MRPL3 "39S ribosomal protein L3... 169 9.1e-13 1
>TAIR|locus:2053713 [details] [associations]
symbol:AT2G43030 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005840 "ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0010207 "photosystem II assembly" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 GO:GO:0009570 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0016020 GO:GO:0006412 GO:GO:0009941
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 InterPro:IPR009000
SUPFAM:SSF50447 EMBL:AC006224 EMBL:AY085287 IPI:IPI00516913
PIR:B84861 RefSeq:NP_181831.1 UniGene:At.28215
ProteinModelPortal:Q9SKX4 SMR:Q9SKX4 STRING:Q9SKX4 PaxDb:Q9SKX4
PRIDE:Q9SKX4 ProMEX:Q9SKX4 EnsemblPlants:AT2G43030.1 GeneID:818905
KEGG:ath:AT2G43030 GeneFarm:64 TAIR:At2g43030 eggNOG:COG0087
HOGENOM:HOG000100368 InParanoid:Q9SKX4 KO:K02906 OMA:KGMRMAG
PhylomeDB:Q9SKX4 ProtClustDB:CLSN2683053 Genevestigator:Q9SKX4
GermOnline:AT2G43030 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 Uniprot:Q9SKX4
Length = 271
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 186/252 (73%), Positives = 204/252 (80%)
Query: 24 FRPTRKASILASPKQPLIFTTKRTTTHIVSMSYEAGIGVMGTKLGMMSYFEXXXXXXXXX 83
F PT L + L+ + T +VS S EAGIGVMG+KLGMMS+FE
Sbjct: 24 FTPT----FLPAKSSSLLIKSSPKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVT 79
Query: 84 XXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRL 143
FREGNIVTQ+KT ATDGYDAVQIGYRRVRDKKLTKPE GHLQK+G IPMRHLQEFRL
Sbjct: 80 VVGFREGNIVTQIKTLATDGYDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRL 139
Query: 144 QSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLG 203
+I+GFE QKL F+EIF EGDLVDV+GTTIGKGFQGGIKRH+F+RG MTHGSKSHR LG
Sbjct: 140 TNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHGSKSHRALG 199
Query: 204 SIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVA 263
SIGAGTTPGRVYKGKKMPGRMGGT KIRKLKIVK+D +L VVMIKGA+PGKPGNLLR+
Sbjct: 200 SIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRIT 259
Query: 264 PAKIVGKNIPKN 275
PAKIVG NIPKN
Sbjct: 260 PAKIVGVNIPKN 271
>TIGR_CMR|CHY_2309 [details] [associations]
symbol:CHY_2309 "ribosomal protein L3" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447
eggNOG:COG0087 HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 ProtClustDB:PRK00001 HAMAP:MF_01325_B
RefSeq:YP_361118.1 ProteinModelPortal:Q3A9R6 SMR:Q3A9R6
STRING:Q3A9R6 PRIDE:Q3A9R6 GeneID:3727674 KEGG:chy:CHY_2309
PATRIC:21277689 BioCyc:CHYD246194:GJCN-2308-MONOMER Uniprot:Q3A9R6
Length = 209
Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
Identities = 91/211 (43%), Positives = 136/211 (64%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGN-IVTQVKTEATDGYDAVQIGYRRVRDKKL 119
G++G K+GM F G +V Q KT A DGY+A+Q+G+ +++ K+
Sbjct: 4 GILGRKVGMTQIF--TEDGRAIPVTVIEAGPCVVVQKKTIANDGYNAIQLGFGEIKESKV 61
Query: 120 TKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQ 179
KP GH ++ + PMR+L+E R+++ID +E GQ++ + IF G+ VDV+G + GKGF
Sbjct: 62 NKPLKGHFNRANVKPMRYLREIRVENIDAYEVGQEIKVD-IFTVGEKVDVTGISKGKGFA 120
Query: 180 GGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
GGIKRH F RG M HGSK HR+ GS+GA P RV+ G+K+PGR+G I+ L++VK+
Sbjct: 121 GGIKRHGFHRGPMAHGSKYHRRPGSLGA-KGPARVFLGRKLPGRLGMERVTIQNLEVVKV 179
Query: 240 DNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 270
D + +++IKG+VPG G+LL + A + GK
Sbjct: 180 DPERNLLVIKGSVPGIRGSLLIIKEA-VKGK 209
>TIGR_CMR|BA_0110 [details] [associations]
symbol:BA_0110 "ribosomal protein L3" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 HOGENOM:HOG000100368 KO:K02906
OMA:KGMRMAG InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 RefSeq:NP_842678.1 RefSeq:YP_016715.1
RefSeq:YP_026396.1 ProteinModelPortal:Q81VT0 SMR:Q81VT0
PRIDE:Q81VT0 DNASU:1087637 EnsemblBacteria:EBBACT00000011145
EnsemblBacteria:EBBACT00000018294 EnsemblBacteria:EBBACT00000021192
GeneID:1087637 GeneID:2818190 GeneID:2852418 KEGG:ban:BA_0110
KEGG:bar:GBAA_0110 KEGG:bat:BAS0110 ProtClustDB:PRK00001
BioCyc:BANT260799:GJAJ-121-MONOMER
BioCyc:BANT261594:GJ7F-123-MONOMER HAMAP:MF_01325_B Uniprot:Q81VT0
Length = 210
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 89/210 (42%), Positives = 127/210 (60%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLT 120
G++G K+GM F N+V Q KT TDGY+A+Q+G+ R+K
Sbjct: 4 GILGRKIGMTQVFAENGELIPVTVIAANP-NVVLQKKTTETDGYNAIQLGFEDKREKLTN 62
Query: 121 KPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQG 180
KPE GH K+ P R ++E R +DG E GQ++ + +F G++VDV+G + GKGFQG
Sbjct: 63 KPEQGHTAKASTTPKRFIREIRDADVDGLEVGQEVKVD-VFATGEIVDVTGISKGKGFQG 121
Query: 181 GIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKID 240
IKRH RG M+HGS+ HR+ GS+G P RV+KGKK+ GRMGG I+ L+IV++D
Sbjct: 122 VIKRHGQSRGPMSHGSRYHRRPGSMGP-VAPNRVFKGKKLAGRMGGDQVTIQNLEIVQVD 180
Query: 241 NDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 270
+ ++++KG VPG +L+ V A V K
Sbjct: 181 TERNLLLVKGNVPGAKKSLVVVQGAVKVSK 210
>UNIPROTKB|Q9KNY4 [details] [associations]
symbol:rplC "50S ribosomal protein L3" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000597 InterPro:IPR019927
Pfam:PF00297 GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 KO:K02906 OMA:KGMRMAG
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 ProtClustDB:PRK00001 HAMAP:MF_01325_B PIR:F82059
RefSeq:NP_232224.1 ProteinModelPortal:Q9KNY4 SMR:Q9KNY4
PRIDE:Q9KNY4 DNASU:2615613 GeneID:2615613 KEGG:vch:VC2596
PATRIC:20084218 Uniprot:Q9KNY4
Length = 209
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 97/207 (46%), Positives = 126/207 (60%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKL 119
IG++G K+GM F E N V+QVKT TDGY A+Q+ + ++
Sbjct: 2 IGLIGRKVGMTRVFTEDGVSIPVTVVEV-EANRVSQVKTLETDGYAAIQVTTGSKKANRV 60
Query: 120 TKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQ 179
TKPE GH K+G+ R L EFRL++ + F G +L E +FNE VDV+GT+ GKGFQ
Sbjct: 61 TKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVE-LFNEVKKVDVTGTSKGKGFQ 119
Query: 180 GGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVK 238
G +KR NFR MTHG S SHR GSIG TPGRV+KGKKM G MG + L+IV+
Sbjct: 120 GAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERVTTQNLEIVR 179
Query: 239 IDNDLRVVMIKGAVPGKPGNLLRVAPA 265
+D + +++IKGAVPG G + V PA
Sbjct: 180 VDAERNLLLIKGAVPGATGGNVIVKPA 206
>TIGR_CMR|VC_2596 [details] [associations]
symbol:VC_2596 "ribosomal protein L3" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
KO:K02906 OMA:KGMRMAG InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 ProtClustDB:PRK00001
HAMAP:MF_01325_B PIR:F82059 RefSeq:NP_232224.1
ProteinModelPortal:Q9KNY4 SMR:Q9KNY4 PRIDE:Q9KNY4 DNASU:2615613
GeneID:2615613 KEGG:vch:VC2596 PATRIC:20084218 Uniprot:Q9KNY4
Length = 209
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 97/207 (46%), Positives = 126/207 (60%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKL 119
IG++G K+GM F E N V+QVKT TDGY A+Q+ + ++
Sbjct: 2 IGLIGRKVGMTRVFTEDGVSIPVTVVEV-EANRVSQVKTLETDGYAAIQVTTGSKKANRV 60
Query: 120 TKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQ 179
TKPE GH K+G+ R L EFRL++ + F G +L E +FNE VDV+GT+ GKGFQ
Sbjct: 61 TKPEAGHFAKAGVEAGRGLWEFRLENGEEFAVGSELTVE-LFNEVKKVDVTGTSKGKGFQ 119
Query: 180 GGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVK 238
G +KR NFR MTHG S SHR GSIG TPGRV+KGKKM G MG + L+IV+
Sbjct: 120 GAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERVTTQNLEIVR 179
Query: 239 IDNDLRVVMIKGAVPGKPGNLLRVAPA 265
+D + +++IKGAVPG G + V PA
Sbjct: 180 VDAERNLLLIKGAVPGATGGNVIVKPA 206
>UNIPROTKB|P42920 [details] [associations]
symbol:rplC "50S ribosomal protein L3" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:2000234 "positive
regulation of rRNA processing" evidence=IDA] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0019843
GO:GO:0006364 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
ProtClustDB:PRK00001 HAMAP:MF_01325_B EMBL:U43929 EMBL:D50302
EMBL:D64127 PIR:G69694 RefSeq:NP_387997.1 ProteinModelPortal:P42920
SMR:P42920 EnsemblBacteria:EBBACT00000003514 GeneID:936239
KEGG:bsu:BSU01160 PATRIC:18971741 GenoList:BSU01160
BioCyc:BSUB:BSU01160-MONOMER GO:GO:2000234 Uniprot:P42920
Length = 209
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 88/205 (42%), Positives = 126/205 (61%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLT 120
G++G K+GM F N+V Q KT DGY+A+Q+G+ R+K
Sbjct: 4 GILGRKIGMTQVFAENGDLIPVTVIEAAP-NVVLQKKTAENDGYEAIQLGFDDKREKLSN 62
Query: 121 KPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQG 180
KPE GH+ K+ P R ++E R +D +E GQ++ E IF+ G++VDV+G + GKGFQG
Sbjct: 63 KPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVE-IFSAGEIVDVTGVSKGKGFQG 121
Query: 181 GIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKID 240
IKRH RG M+HGS+ HR+ GS+G P RV+KGK +PGRMGG ++ L+IVK+D
Sbjct: 122 AIKRHGQSRGPMSHGSRYHRRPGSMGP-VDPNRVFKGKLLPGRMGGEQITVQNLEIVKVD 180
Query: 241 NDLRVVMIKGAVPGKPGNLLRVAPA 265
+ +++IKG VPG +L+ V A
Sbjct: 181 AERNLLLIKGNVPGAKKSLITVKSA 205
>TIGR_CMR|GSU_2857 [details] [associations]
symbol:GSU_2857 "ribosomal protein L3" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
ProtClustDB:PRK00001 HAMAP:MF_01325_B RefSeq:NP_953900.1
ProteinModelPortal:P60454 SMR:P60454 GeneID:2686777
KEGG:gsu:GSU2857 PATRIC:22028561
BioCyc:GSUL243231:GH27-2831-MONOMER Uniprot:P60454
Length = 210
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 83/203 (40%), Positives = 124/203 (61%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGN-IVTQVKTEATDGYDAVQIGYRRVRDKKL 119
G++ KLGM F + G +V Q KT ATDGYDA+Q+G+ +K+
Sbjct: 4 GLIAKKLGMTQIF--AEDGKRIPVTVVQAGPCVVLQKKTSATDGYDAIQVGFLSQEARKV 61
Query: 120 TKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQ 179
TKP LGH++ +G H++EFRL +D + G ++ + F G+ +DV+GT+IGKGFQ
Sbjct: 62 TKPMLGHIKAAGQGAFAHIREFRLDDVDRYNVGDVIS-ADAFEVGEYIDVTGTSIGKGFQ 120
Query: 180 GGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
G IKR FR G +HGS HR GSIG+ P RV+K KKMPG++G +++L++V++
Sbjct: 121 GVIKRWGFRGGRSSHGSCFHRAPGSIGSSAYPSRVFKNKKMPGQLGNERVTVQRLQVVRV 180
Query: 240 DNDLRVVMIKGAVPGKPGNLLRV 262
D +++IKGA+PG ++ V
Sbjct: 181 DAADNILLIKGAIPGAKNGIVLV 203
>TIGR_CMR|CPS_0873 [details] [associations]
symbol:CPS_0873 "ribosomal protein L3" species:167879
"Colwellia psychrerythraea 34H" [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447
eggNOG:COG0087 HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 HAMAP:MF_01325_B RefSeq:YP_267622.1
ProteinModelPortal:Q487Z3 SMR:Q487Z3 STRING:Q487Z3 GeneID:3518812
KEGG:cps:CPS_0873 PATRIC:21465039
BioCyc:CPSY167879:GI48-959-MONOMER Uniprot:Q487Z3
Length = 212
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 94/210 (44%), Positives = 126/210 (60%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKL 119
IG++G K+GM F E N V QVKT DGY A+Q+ + + ++
Sbjct: 3 IGLVGRKVGMTRVFTEDGVSTPVTVIEV-EANRVAQVKTVDNDGYSALQVTTGKRKASRV 61
Query: 120 TKPELGHLQKSGLIPMRHLQEFRLQSIDG--FEAGQKLAFEEIFNEGDLVDVSGTTIGKG 177
TKP GH K+G+ R L EFRL +G EAG ++ E +FN+ LVDV+GT+ GKG
Sbjct: 62 TKPAAGHFAKAGIEAGRGLWEFRLNENEGSDIEAGSEITVE-VFNDTKLVDVTGTSKGKG 120
Query: 178 FQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKI 236
FQGGIKR NF THG S SHR GS+G TPGRV+KGKKM G MG + L++
Sbjct: 121 FQGGIKRWNFTMQHATHGVSLSHRSNGSLGQCQTPGRVFKGKKMSGHMGAVRCTTQNLEL 180
Query: 237 VKIDNDLRVVMIKGAVPGK-PGNLLRVAPA 265
V++D + +++IKGAVPG GN++ + PA
Sbjct: 181 VRVDAERNLLLIKGAVPGAINGNVI-IKPA 209
>UNIPROTKB|P60442 [details] [associations]
symbol:rplC "50S ribosomal protein L3" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0040007 "growth"
evidence=IMP] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
GO:GO:0005829 GO:GO:0005886 GO:GO:0040007 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0006412
GO:GO:0005840 EMBL:BX842574 GO:GO:0003735 GO:GO:0019843
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
ProtClustDB:PRK00001 HAMAP:MF_01325_B PIR:H70641 RefSeq:NP_215215.1
RefSeq:NP_335145.1 RefSeq:YP_006514045.1 ProteinModelPortal:P60442
SMR:P60442 PRIDE:P60442 EnsemblBacteria:EBMYCT00000002326
EnsemblBacteria:EBMYCT00000070012 GeneID:13318590 GeneID:888343
GeneID:926018 KEGG:mtc:MT0728 KEGG:mtu:Rv0701 KEGG:mtv:RVBD_0701
PATRIC:18123333 TubercuList:Rv0701 Uniprot:P60442
Length = 217
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 88/210 (41%), Positives = 125/210 (59%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREG-NIVTQVKTEATDGYDAVQIGYRRVRDKKL 119
G++GTKLGM F+ + G N+VT+++T DGY AVQ+ Y + +K+
Sbjct: 5 GILGTKLGMTQVFDESNRVVPVTVV--KAGPNVVTRIRTPERDGYSAVQLAYGEISPRKV 62
Query: 120 TKPELGHLQKSGLIPMRHLQEFRLQSIDG---FEAGQKLAFEEIFNEGDLVDVSGTTIGK 176
KP G +G+ P R+L E RL D ++ GQ+L EIF +G VDV+GT+ GK
Sbjct: 63 NKPLTGQYTAAGVNPRRYLAELRLDDSDAATEYQVGQELT-AEIFADGSYVDVTGTSKGK 121
Query: 177 GFQGGIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLK 235
GF G +KRH FR +HG+++ HR+ GSIG TP RV+KG +M GRMG + L
Sbjct: 122 GFAGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPARVFKGTRMAGRMGNDRVTVLNLL 181
Query: 236 IVKIDNDLRVVMIKGAVPGKPGNLLRVAPA 265
+ K+D + V++IKGAVPG+ G L+ V A
Sbjct: 182 VHKVDAENGVLLIKGAVPGRTGGLVMVRSA 211
>UNIPROTKB|P60438 [details] [associations]
symbol:rplC "50S ribosomal subunit protein L3"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 EMBL:U18997 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
InterPro:IPR009000 SUPFAM:SSF50447 PDB:2VHM PDBsum:2VHM PDB:2RDO
PDBsum:2RDO EMBL:V00344 eggNOG:COG0087 HOGENOM:HOG000100368
KO:K02906 OMA:KGMRMAG InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 PDB:3J0T PDB:3J0W PDB:3J0Y
PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T
PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12 PDBsum:3J14
PDBsum:3SGF PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8
PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V
PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG
PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN
PDB:2WWQ PDB:2Z4L PDB:2Z4N PDB:3DF2 PDB:3DF4 PDB:3E1B PDB:3E1D
PDB:3FIK PDB:3I1N PDB:3I1P PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22
PDB:3IZT PDB:3IZU PDB:3J01 PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT
PDB:3OFC PDB:3OFD PDB:3OFQ PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB
PDB:3R8S PDB:3R8T PDB:4GAR PDB:4GAU PDBsum:1P85 PDBsum:1P86
PDBsum:1VS6 PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB
PDBsum:2GYA PDBsum:2GYC PDBsum:2I2T PDBsum:2I2V PDBsum:2J28
PDBsum:2QAM PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE
PDBsum:2QBG PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX
PDBsum:2QOZ PDBsum:2QP1 PDBsum:2VHN PDBsum:2WWQ PDBsum:2Z4L
PDBsum:2Z4N PDBsum:3DF2 PDBsum:3DF4 PDBsum:3E1B PDBsum:3E1D
PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T
PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU PDBsum:3J01
PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC
PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0
PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU
PDB:3BBX PDBsum:3BBX EMBL:X02613 ProtClustDB:PRK00001
HAMAP:MF_01325_B PIR:A02757 RefSeq:NP_417779.1 RefSeq:YP_492112.1
ProteinModelPortal:P60438 SMR:P60438 IntAct:P60438
MINT:MINT-1302843 PaxDb:P60438 PRIDE:P60438
EnsemblBacteria:EBESCT00000001875 EnsemblBacteria:EBESCT00000014527
GeneID:12932298 GeneID:947817 KEGG:ecj:Y75_p3856 KEGG:eco:b3320
PATRIC:32122072 EchoBASE:EB0859 EcoGene:EG10866
BioCyc:EcoCyc:EG10866-MONOMER BioCyc:ECOL316407:JW3282-MONOMER
EvolutionaryTrace:P60438 Genevestigator:P60438 Uniprot:P60438
Length = 209
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 91/207 (43%), Positives = 123/207 (59%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKL 119
IG++G K+GM F E N VTQVK A DGY A+Q+ + ++
Sbjct: 2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRV 60
Query: 120 TKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQ 179
TKPE GH K+G+ R L EFRL + F GQ ++ E +F + VDV+GT+ GKGF
Sbjct: 61 TKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVE-LFADVKKVDVTGTSKGKGFA 119
Query: 180 GGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVK 238
G +KR NFR THG S SHR GSIG TPG+V+KGKKM G+MG ++ L +V+
Sbjct: 120 GTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVR 179
Query: 239 IDNDLRVVMIKGAVPGKPGNLLRVAPA 265
+D + ++++KGAVPG G+ L V PA
Sbjct: 180 VDAERNLLLVKGAVPGATGSDLIVKPA 206
>TIGR_CMR|SO_0231 [details] [associations]
symbol:SO_0231 "ribosomal protein L3" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
ProtClustDB:PRK00001 HAMAP:MF_01325_B RefSeq:NP_715871.1
ProteinModelPortal:Q8EK68 SMR:Q8EK68 GeneID:1168114
KEGG:son:SO_0231 PATRIC:23520155 Uniprot:Q8EK68
Length = 212
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 94/209 (44%), Positives = 120/209 (57%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKL 119
IG++G K+GM F GN VTQVKT TDGY A+Q+ + ++
Sbjct: 3 IGLIGRKVGMTRIFTEDGVSIPVTVIEVA-GNRVTQVKTLETDGYRALQVTTGTKKANRI 61
Query: 120 TKPELGHLQKSGLIPMRHLQEFRLQSIDG--FEAGQKLAFEEIFNEGDLVDVSGTTIGKG 177
TKPE GH KSG+ R L E RL +G E G +L IF + VDV+G + GKG
Sbjct: 62 TKPEAGHFAKSGVEAGRGLWELRLADGEGEGIEVGAELNVG-IFADVAKVDVTGQSKGKG 120
Query: 178 FQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKI 236
FQGG+KR NFR MTHG S SHR GSIG TPGRV+KGKKM G MG + L +
Sbjct: 121 FQGGVKRWNFRTQDMTHGNSLSHRSNGSIGQNQTPGRVFKGKKMSGHMGAERVTTQNLDV 180
Query: 237 VKIDNDLRVVMIKGAVPGKPGNLLRVAPA 265
V++D + ++++KGAVPG L + PA
Sbjct: 181 VRVDVERNLLLVKGAVPGATNGDLIIKPA 209
>TIGR_CMR|CBU_0238 [details] [associations]
symbol:CBU_0238 "ribosomal protein L3" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
ProtClustDB:PRK00001 HAMAP:MF_01325_B RefSeq:NP_819282.1
ProteinModelPortal:Q83ES4 SMR:Q83ES4 GeneID:1208119
KEGG:cbu:CBU_0238 PATRIC:17929169
BioCyc:CBUR227377:GJ7S-244-MONOMER Uniprot:Q83ES4
Length = 217
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 87/201 (43%), Positives = 117/201 (58%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKL 119
IG++G K GM F N +TQVKT TDGY A Q+ Y + ++
Sbjct: 3 IGLIGRKCGMTRIFTETGSSIPVTVVEVIL-NRITQVKTVETDGYRAFQVAYGKKSSARV 61
Query: 120 TKPELGHLQKSGLIPMRHLQEFRL--QSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKG 177
KP GH K+ + L+EFRL + + +AG +L + IF EG +VDV G T GKG
Sbjct: 62 NKPLAGHYSKAAVEAGNALREFRLGNEELTEAKAGDELKVD-IFKEGQVVDVRGLTRGKG 120
Query: 178 FQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKI 236
F G +KRHNFR THG S SHR GSIG TPGRV+KGKKM G++G ++ +I
Sbjct: 121 FAGTVKRHNFRTQDATHGNSLSHRAPGSIGQCQTPGRVWKGKKMAGQLGNVYCTVQSQEI 180
Query: 237 VKIDNDLRVVMIKGAVPGKPG 257
+K+D + +++IKGA+PG PG
Sbjct: 181 IKVDVERNLLLIKGALPGAPG 201
>DICTYBASE|DDB_G0288983 [details] [associations]
symbol:mrpl3 "ribosomal protein L3, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
dictyBase:DDB_G0288983 GO:GO:0006412 GenomeReviews:CM000154_GR
GO:GO:0005840 GO:GO:0003735 EMBL:AAFI02000129 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
HAMAP:MF_01325_B RefSeq:XP_636449.1 ProteinModelPortal:Q54I61
STRING:Q54I61 EnsemblProtists:DDB0238285 GeneID:8626901
KEGG:ddi:DDB_G0288983 OMA:GAVPGKK ProtClustDB:CLSZ2728823
Uniprot:Q54I61
Length = 351
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 78/209 (37%), Positives = 123/209 (58%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKL 119
+G +G K+GM++ + N VTQ+K + DG D +Q+G ++ K +
Sbjct: 67 VGAIGKKVGMLTTYIGDIAYPVTVIQL--PNNQVTQIKRKVNDGVDMIQVGADEIKLKNV 124
Query: 120 TKPELGHLQKSGLIPMRHLQEFRL-QSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGF 178
+K GH K+ + P R L EFR+ ++ E G + + F G L+ V GT GKGF
Sbjct: 125 SKTLQGHFAKANVPPKRVLMEFRVTRNAMNLELGTPI-LPKHFLPGQLITVKGTNTGKGF 183
Query: 179 QGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIV 237
GG+KR +F THG S +HR +GS G TPGRV+KG+KMPGR+GG + ++ L+++
Sbjct: 184 AGGMKRWHFSGQPATHGVSLTHRAIGSTGCRQTPGRVFKGRKMPGRLGGKSCTVKNLQVL 243
Query: 238 KIDNDLRVVMIKGAVPGKPGNLLRVAPAK 266
KI+ ++ +++KGAVPGK G L++ ++
Sbjct: 244 KINTEMNCLLVKGAVPGKKGGYLKITDSR 272
>TIGR_CMR|SPO_3825 [details] [associations]
symbol:SPO_3825 "ribosomal protein L3" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 ProtClustDB:PRK00001
HAMAP:MF_01325_B RefSeq:YP_169013.1 ProteinModelPortal:Q5LLU6
SMR:Q5LLU6 GeneID:3192891 KEGG:sil:SPO3825 PATRIC:23381151
OMA:THRAHGS Uniprot:Q5LLU6
Length = 241
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 86/215 (40%), Positives = 111/215 (51%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLT 120
G++ K+GM F +V Q TE DGY AVQ+G + K+++
Sbjct: 4 GIIAKKVGMTRLFMEDGKQIPVTVLQLDNLQVVAQRTTEK-DGYTAVQLGAGTPKIKRVS 62
Query: 121 KPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQG 180
K GH + P R L EFR+ E G +++ E F G VDVSGT+IGKGF G
Sbjct: 63 KAMRGHFAAQKVEPKRKLAEFRVSEDALIEVGAEISAEH-FLTGQKVDVSGTSIGKGFAG 121
Query: 181 GIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
+KRHNF +HG S SHR GS G PGRV+KGKKM G MG + L++VK
Sbjct: 122 AMKRHNFGGLRASHGVSISHRSHGSTGQCQDPGRVFKGKKMAGHMGAARVTTQNLEVVKT 181
Query: 240 DNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPK 274
D + +V IKGAVPG + V A V K P+
Sbjct: 182 DAERGLVFIKGAVPGPKSGWVTVKDA--VKKKAPE 214
>TIGR_CMR|DET_0474 [details] [associations]
symbol:DET_0474 "ribosomal protein L3" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 OMA:KGMRMAG InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
ProtClustDB:PRK00001 HAMAP:MF_01325_B RefSeq:YP_181218.1
ProteinModelPortal:Q3Z981 STRING:Q3Z981 GeneID:3230155
KEGG:det:DET0474 PATRIC:21608017 BioCyc:DETH243164:GJNF-474-MONOMER
Uniprot:Q3Z981
Length = 205
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 76/204 (37%), Positives = 111/204 (54%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGN-IVTQVKTEATDGYDAVQIGYRRVRDKKL 119
G++G K+GM F+ G +V QVKTE DGY+AVQ+GY + K +
Sbjct: 4 GIIGKKIGMTQIFQEDGKAQPVTLV--EAGPCVVVQVKTEKQDGYEAVQLGYGKA--KHI 59
Query: 120 TKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQ 179
T G Q G + L+E + I G ++ + F +G+ +D SG + G+GF
Sbjct: 60 TSAVKG--QCRGFGEFKVLREVDVDDIAAVNVGDQITVSD-FKDGEKIDASGVSRGRGFA 116
Query: 180 GGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVK 238
G +KR +F G THG S HR GSI + TTPGR+YKGK+M G MG IR L ++K
Sbjct: 117 GVVKRWHFAGGPKTHGQSDRHRAPGSISSTTTPGRIYKGKRMAGHMGNDAVTIRNLVVLK 176
Query: 239 IDNDLRVVMIKGAVPGKPGNLLRV 262
D + ++M+KGA+PG ++ +
Sbjct: 177 TDAEKNLLMVKGAIPGGKNTIILI 200
>TAIR|locus:2093586 [details] [associations]
symbol:RPL3P "ribosomal protein L3 plastid" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS;NAS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM;IDA]
[GO:0005840 "ribosome" evidence=IEA;ISS;NAS] [GO:0006412
"translation" evidence=IEA;ISS;NAS] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 GO:GO:0005739 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AB022219 GO:GO:0019843 InterPro:IPR009000
SUPFAM:SSF50447 EMBL:AB028620 eggNOG:COG0087 HOGENOM:HOG000100368
KO:K02906 InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 EMBL:AF370170 IPI:IPI00543781 RefSeq:NP_566579.1
UniGene:At.19059 ProteinModelPortal:Q9LRN8 SMR:Q9LRN8 STRING:Q9LRN8
PaxDb:Q9LRN8 PRIDE:Q9LRN8 EnsemblPlants:AT3G17465.1 GeneID:821011
KEGG:ath:AT3G17465 TAIR:At3g17465 InParanoid:Q9LRN8 OMA:HGSVPGH
PhylomeDB:Q9LRN8 ProtClustDB:CLSN2688490 Genevestigator:Q9LRN8
GermOnline:AT3G17465 Uniprot:Q9LRN8
Length = 324
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 76/206 (36%), Positives = 110/206 (53%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLT 120
G++ K GM + ++ + + NIV+QVKT +G A+QIG + + K L+
Sbjct: 78 GIIAVKCGMTALWDKWGKRIPISIL-WVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLS 136
Query: 121 KPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQG 180
K +GH + G+ R L+EF + G L F G VDV+G T GKGFQG
Sbjct: 137 KAVVGHFRAQGVPLKRKLREFPVTEDALLPVGTSLGVRH-FVPGQYVDVTGITRGKGFQG 195
Query: 181 GIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
+KRH F +HG S SHR GS G PG+V+KG+KM GRMG R ++ + + KI
Sbjct: 196 CMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKI 255
Query: 240 DNDLRVVMIKGAVPGKPGNLLRVAPA 265
D ++ ++G VPG GN + + A
Sbjct: 256 DPARNLMWVRGQVPGAEGNFVFIKDA 281
>ASPGD|ASPL0000071039 [details] [associations]
symbol:AN4308 species:162425 "Emericella nidulans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0005739
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:BN001303
InterPro:IPR009000 SUPFAM:SSF50447 EMBL:AACD01000075 eggNOG:COG0087
HOGENOM:HOG000100368 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 HAMAP:MF_01325_B OMA:THRAHGS
OrthoDB:EOG4KM2CG RefSeq:XP_661912.1 ProteinModelPortal:Q5B572
STRING:Q5B572 EnsemblFungi:CADANIAT00006157 GeneID:2872107
KEGG:ani:AN4308.2 Uniprot:Q5B572
Length = 296
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 78/217 (35%), Positives = 109/217 (50%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLT 120
G + K GM + F+ + V KT GY AVQ+G +T
Sbjct: 74 GAIAIKKGMTAIFDPETGKRISCTVLQLDRVQVIAHKTVDVHGYYAVQMGAGWKHPNNVT 133
Query: 121 KPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQG 180
K LGH + G+ P RH+ EFR++ DG +L + F+EG VD T GKGF G
Sbjct: 134 KSLLGHFSEQGVSPKRHVYEFRVKDEDGLLPVGQLVNADWFHEGQYVDARSNTKGKGFAG 193
Query: 181 GIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPG-RVYKGKKMPGRMGGTTRKIRKLKIVK 238
+KRH F +HG S +HR LGS G G RVY GKKM G MG ++ LK++K
Sbjct: 194 VMKRHGFGGQDRSHGVSLTHRSLGSAGPSQGGGSRVYPGKKMAGNMGNEQNTVQNLKVLK 253
Query: 239 IDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPKN 275
+D + +V++ G+V G G ++R+ A + K P N
Sbjct: 254 VDAENGLVLVNGSVSGPKGCVVRIQDA--IKKPWPVN 288
>SGD|S000003452 [details] [associations]
symbol:MRPL9 "Mitochondrial ribosomal protein of the large
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0002181 "cytoplasmic
translation" evidence=ISS] [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
SGD:S000003452 EMBL:BK006941 GO:GO:0005762 GO:GO:0003735
GO:GO:0002181 EMBL:X87941 InterPro:IPR009000 SUPFAM:SSF50447
eggNOG:COG0087 HOGENOM:HOG000100368 InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474 OMA:THRAHGS
GeneTree:ENSGT00390000011422 OrthoDB:EOG4KM2CG EMBL:X65014
EMBL:Z73004 EMBL:AY558274 PIR:S23455 RefSeq:NP_011736.1
ProteinModelPortal:P31334 SMR:P31334 DIP:DIP-6806N IntAct:P31334
MINT:MINT-613241 STRING:P31334 PaxDb:P31334 EnsemblFungi:YGR220C
GeneID:853135 KEGG:sce:YGR220C CYGD:YGR220c NextBio:973195
Genevestigator:P31334 GermOnline:YGR220C Uniprot:P31334
Length = 269
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 69/207 (33%), Positives = 104/207 (50%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNI-VTQVKTEATDGYDAVQIGYRRVRDKKL 119
G++ K GMM YF+ N+ V +T +GY A Q+GY K+
Sbjct: 60 GLITRKKGMMPYFDKSTGERSAATI-LEVNNVEVIMHRTSEVNGYFACQVGYGSRHLSKV 118
Query: 120 TKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQ 179
++ LGH + P H+ EFR++ G L F EG VDV + GKGF
Sbjct: 119 SRQMLGHFASKVVNPKEHVAEFRVKDEKGLIPPGTLLKPSFFKEGQYVDVRSVSKGKGFT 178
Query: 180 GGIKRHNFRRGAMTHGSK-SHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVK 238
G +KR+ F+ +HG+ HR GS G PGRV G+KMPG MG I+ +K++K
Sbjct: 179 GVMKRYGFKGLRASHGTSIMHRHGGSYGQNQDPGRVLPGRKMPGHMGNEHVTIQNVKVLK 238
Query: 239 IDNDLRVVMIKGAVPGKPGNLLRVAPA 265
+D++ V+ +KG+V G + +++ A
Sbjct: 239 VDDENNVIWVKGSVAGPKNSFVKIQDA 265
>TIGR_CMR|APH_0280 [details] [associations]
symbol:APH_0280 "ribosomal protein L3" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 ProtClustDB:PRK00001 OMA:CKLYESR
RefSeq:YP_504892.1 ProteinModelPortal:Q2GL59 STRING:Q2GL59
GeneID:3930343 KEGG:aph:APH_0280 PATRIC:20949134
BioCyc:APHA212042:GHPM-310-MONOMER Uniprot:Q2GL59
Length = 220
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 74/211 (35%), Positives = 113/211 (53%)
Query: 66 KLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELG 125
K+G + F+ E V K GYDAV +G +R R + KP++
Sbjct: 5 KVGSTAMFDATTGSRVPVTLLLLEDTFVVGTKVSGIHGYDAVVLGTKR-RGV-VNKPQVQ 62
Query: 126 HLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRH 185
L+K G+ L E R++++ + G K+ F +G VDV+G TIG+GF G +KRH
Sbjct: 63 ALRKLGIEEDYKLFESRVKAVGDLQPGSKVEVSHFF-KGQFVDVTGYTIGRGFAGVMKRH 121
Query: 186 NFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLR 244
NFR +HG S SHR GS G PGRV+KGKKM G MG + ++ L+++ +D
Sbjct: 122 NFRGLRASHGVSISHRSQGSTGQCQDPGRVFKGKKMAGHMGDSKVTMQNLQVMLVDEKES 181
Query: 245 VVMIKGA-VPGKPGNLLRVAPAKIVGKNIPK 274
+++++G +PG G+ + V A + K +PK
Sbjct: 182 LLVVRGTGIPGAEGSYVFVRDA--IKKPVPK 210
>POMBASE|SPAC644.17c [details] [associations]
symbol:mrpl9 "mitochondrial ribosomal protein subunit L9
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000048
"peptidyltransferase activity" evidence=ISS] [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0032543 "mitochondrial translation" evidence=NAS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
PomBase:SPAC644.17c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0005762 GO:GO:0003735 GO:GO:0032543 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 HOGENOM:HOG000100368
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 OMA:THRAHGS GO:GO:0000048 RefSeq:NP_593885.1
ProteinModelPortal:Q9P6P6 STRING:Q9P6P6 EnsemblFungi:SPAC644.17c.1
GeneID:2543386 KEGG:spo:SPAC644.17c OrthoDB:EOG4KM2CG
NextBio:20804401 Uniprot:Q9P6P6
Length = 259
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 63/160 (39%), Positives = 90/160 (56%)
Query: 96 VKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKL 155
V+T+ GY AVQ+G + K +TK E G+ + P H++EFR++ G + +
Sbjct: 80 VRTKEKHGYYAVQVGSGIRKPKSITKAEQGNFFSHNIYPKMHVREFRVRDASGLVSPGTI 139
Query: 156 AFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRV 214
+ F VDV G T GKGF G +KR F G +HG S SHR GS G TTP RV
Sbjct: 140 FTTDYFKPKQYVDVKGITKGKGFAGVMKRWGFSGGNASHGASLSHRTPGSTGQNTTPSRV 199
Query: 215 YKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPG 254
G+KM G MG +R ++ L + +D DL +++KG++PG
Sbjct: 200 LPGRKMAGHMGHRSRTVKNLLVWAVDADLECILVKGSIPG 239
>TIGR_CMR|ECH_0409 [details] [associations]
symbol:ECH_0409 "ribosomal protein L3" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 ProtClustDB:PRK00001 OMA:CKLYESR
RefSeq:YP_507227.1 ProteinModelPortal:Q2GH56 STRING:Q2GH56
GeneID:3927562 KEGG:ech:ECH_0409 PATRIC:20576295
BioCyc:ECHA205920:GJNR-410-MONOMER Uniprot:Q2GH56
Length = 231
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 72/217 (33%), Positives = 118/217 (54%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKL 119
IG+ K+G + F+ R+ I+++ KT+ GYDAV +G L
Sbjct: 5 IGLFLEKVGHTAIFDNEGKRIPITLLHLRDSFIISK-KTKDIHGYDAVVLGVEA--SINL 61
Query: 120 TKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQ 179
KP+ L+KS + + E R+ ++ G K++ F + VD++G ++GKGF
Sbjct: 62 KKPQSKILEKSKITAKCKIFESRVDNLGDVVEGAKVSITH-FVKDQYVDITGYSLGKGFA 120
Query: 180 GGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVK 238
G +KRHNF+ +HG S +HR GS G PGRVYKGKKM G++G + ++ LK++
Sbjct: 121 GVMKRHNFKGLKASHGVSIAHRSQGSTGQCQDPGRVYKGKKMAGQLGNSKVTVQNLKVIL 180
Query: 239 IDNDLRVVMIKGA-VPGKPGNLLRVAPAKIVGKNIPK 274
+D + ++ ++G +PG G+ + V A V K++PK
Sbjct: 181 VDQERSLLGVRGNNIPGAKGSYVFVKDA--VKKSVPK 215
>CGD|CAL0005707 [details] [associations]
symbol:orf19.7485 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR000597 InterPro:IPR019927
Pfam:PF00297 CGD:CAL0005707 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 EMBL:AACQ01000039
eggNOG:COG0087 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 RefSeq:XP_718642.1
ProteinModelPortal:Q5AAK4 STRING:Q5AAK4 GeneID:3639723
KEGG:cal:CaO19.7485 Uniprot:Q5AAK4
Length = 293
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 78/244 (31%), Positives = 123/244 (50%)
Query: 43 TTKRTTTHIVSMSYEAGI-----GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVK 97
TT T H + S + + G+ K GM+++F ++ K
Sbjct: 45 TTAPTRNHTIQESTKRKLLLERPGLFAIKRGMITWFNEKGEHIPATVLEVDSCEVLGY-K 103
Query: 98 TEATDGYDAVQIG-YRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDG-FEA---- 151
GY AV +G ++++ K T +L + + + P + + EF+++SID E+
Sbjct: 104 LFKDFGYTAVIMGTIDKLKNVKSTN-DLRIFETAKVSPKQKIGEFKIRSIDNDIESKLIP 162
Query: 152 -GQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGT 209
G +L + F+ G VDV G T GKGF G +KR F G THG SK+HR G+ G
Sbjct: 163 VGTELT-ADYFSVGQKVDVKGVTKGKGFAGVMKRWGFSGGRATHGTSKAHRTPGATGGNQ 221
Query: 210 TPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPA-KIV 268
PGRV+ GKKMPGRMG L+++ D + ++++KG VPG ++++V+ A K
Sbjct: 222 NPGRVFPGKKMPGRMGHQNNTGFNLEVLHTDGEAGILIVKGNVPGPKKSIIKVSDAIKEY 281
Query: 269 GKNI 272
G +I
Sbjct: 282 GNSI 285
>ZFIN|ZDB-GENE-030131-8227 [details] [associations]
symbol:mrpl3 "mitochondrial ribosomal protein L3"
species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
ZFIN:ZDB-GENE-030131-8227 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 GeneTree:ENSGT00390000011422 HOGENOM:HOG000100369
HOVERGEN:HBG002294 OrthoDB:EOG4548ZW EMBL:CR626877 IPI:IPI00759186
UniGene:Dr.78414 Ensembl:ENSDART00000020928 InParanoid:Q1L8V7
Uniprot:Q1L8V7
Length = 345
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 70/224 (31%), Positives = 116/224 (51%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGY-DAVQIGYRRVRDKK 118
+G++ KLGMM + ++ ++V + E +G+ A+ +G + V
Sbjct: 97 VGLVAIKLGMMPVWSKSGERHVVTMLQVKDCHVVKHLSKEDYNGHTSALVVGGKNV--SP 154
Query: 119 LTKPELGHL---QKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIG 175
+P +G+L Q +G+ P + L F + + G L + F G VDV+ TIG
Sbjct: 155 FHRP-VGYLEIFQNAGIPPKQKLTTFCVTDNAIIKPGTPL-YAAHFRPGQYVDVTAKTIG 212
Query: 176 KGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKL 234
KGFQG +KR F+ +HG +K+HR+ G++G G P +V+KG KMPGRMG L
Sbjct: 213 KGFQGVMKRWGFKGQPASHGQTKTHRRPGALGPGGDPAKVFKGTKMPGRMGNVYNTNFGL 272
Query: 235 KIVKIDNDLRVVMIKGAVPGKPGNLLRVA----PAKIV-GKNIP 273
KI +++ ++ + G+VPG L++V P ++ KN+P
Sbjct: 273 KIWRVNTKYNILYVNGSVPGHRNCLVKVRDTVLPTRLEKNKNLP 316
>UNIPROTKB|E7ETU7 [details] [associations]
symbol:MRPL3 "39S ribosomal protein L3, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
HGNC:HGNC:10379 EMBL:AC107027 IPI:IPI00795627
ProteinModelPortal:E7ETU7 SMR:E7ETU7 Ensembl:ENST00000425847
UCSC:uc011blp.2 ArrayExpress:E7ETU7 Bgee:E7ETU7 Uniprot:E7ETU7
Length = 375
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 70/222 (31%), Positives = 115/222 (51%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDA-VQIGYRRV-RDK 117
+G++ KLGMM + ++ +++ E +G A + +G + V R +
Sbjct: 124 VGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFR 183
Query: 118 KLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKG 177
K T L ++ GL P + ++ F + + G L + F G VDV+ TIGKG
Sbjct: 184 KATSI-LEFYRELGLPPKQTVKIFNITDNAAIKPGTPL-YAAHFRPGQYVDVTAKTIGKG 241
Query: 178 FQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKI 236
FQG +KR F+ THG +K+HR+ G++ G GRV+ G KMPG+MG R LK+
Sbjct: 242 FQGVMKRWGFKGQPATHGQTKTHRRPGAVATGDI-GRVWPGTKMPGKMGNIYRTEYGLKV 300
Query: 237 VKIDNDLRVVMIKGAVPGKPGNLLRVAPAKI-----VGKNIP 273
+I+ ++ + G+VPG L++V +K+ +GKN+P
Sbjct: 301 WRINTKHNIIYVNGSVPGHKNCLVKVKDSKLPAYKDLGKNLP 342
>UNIPROTKB|H0Y9G6 [details] [associations]
symbol:MRPL3 "39S ribosomal protein L3, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474 OMA:HGSVPGH
HGNC:HGNC:10379 EMBL:AC107027 Ensembl:ENST00000511168
Uniprot:H0Y9G6
Length = 363
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 70/222 (31%), Positives = 115/222 (51%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDA-VQIGYRRV-RDK 117
+G++ KLGMM + ++ +++ E +G A + +G + V R +
Sbjct: 112 VGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFR 171
Query: 118 KLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKG 177
K T L ++ GL P + ++ F + + G L + F G VDV+ TIGKG
Sbjct: 172 KATSI-LEFYRELGLPPKQTVKIFNITDNAAIKPGTPL-YAAHFRPGQYVDVTAKTIGKG 229
Query: 178 FQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKI 236
FQG +KR F+ THG +K+HR+ G++ G GRV+ G KMPG+MG R LK+
Sbjct: 230 FQGVMKRWGFKGQPATHGQTKTHRRPGAVATGDI-GRVWPGTKMPGKMGNIYRTEYGLKV 288
Query: 237 VKIDNDLRVVMIKGAVPGKPGNLLRVAPAKI-----VGKNIP 273
+I+ ++ + G+VPG L++V +K+ +GKN+P
Sbjct: 289 WRINTKHNIIYVNGSVPGHKNCLVKVKDSKLPAYKDLGKNLP 330
>UNIPROTKB|P09001 [details] [associations]
symbol:MRPL3 "39S ribosomal protein L3, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005762 "mitochondrial large ribosomal subunit" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] InterPro:IPR000597
InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412 EMBL:CH471052
GO:GO:0003723 GO:GO:0005762 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 CTD:11222 HOGENOM:HOG000100369
HOVERGEN:HBG002294 OrthoDB:EOG4548ZW EMBL:X06323 EMBL:CR456720
EMBL:BC003375 IPI:IPI00012353 PIR:A27294 RefSeq:NP_009139.1
UniGene:Hs.205163 ProteinModelPortal:P09001 SMR:P09001
IntAct:P09001 STRING:P09001 PhosphoSite:P09001 DMDM:133116
PaxDb:P09001 PeptideAtlas:P09001 PRIDE:P09001 DNASU:11222
Ensembl:ENST00000264995 GeneID:11222 KEGG:hsa:11222 UCSC:uc003eoh.3
GeneCards:GC03M131181 HGNC:HGNC:10379 HPA:HPA043665 MIM:607118
MIM:614582 neXtProt:NX_P09001 PharmGKB:PA30960 InParanoid:P09001
GenomeRNAi:11222 NextBio:42715 ArrayExpress:P09001 Bgee:P09001
CleanEx:HS_MRPL3 Genevestigator:P09001 GermOnline:ENSG00000114686
Uniprot:P09001
Length = 348
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 70/222 (31%), Positives = 115/222 (51%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDA-VQIGYRRV-RDK 117
+G++ KLGMM + ++ +++ E +G A + +G + V R +
Sbjct: 97 VGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFR 156
Query: 118 KLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKG 177
K T L ++ GL P + ++ F + + G L + F G VDV+ TIGKG
Sbjct: 157 KATSI-LEFYRELGLPPKQTVKIFNITDNAAIKPGTPL-YAAHFRPGQYVDVTAKTIGKG 214
Query: 178 FQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKI 236
FQG +KR F+ THG +K+HR+ G++ G GRV+ G KMPG+MG R LK+
Sbjct: 215 FQGVMKRWGFKGQPATHGQTKTHRRPGAVATGDI-GRVWPGTKMPGKMGNIYRTEYGLKV 273
Query: 237 VKIDNDLRVVMIKGAVPGKPGNLLRVAPAKI-----VGKNIP 273
+I+ ++ + G+VPG L++V +K+ +GKN+P
Sbjct: 274 WRINTKHNIIYVNGSVPGHKNCLVKVKDSKLPAYKDLGKNLP 315
>FB|FBgn0030686 [details] [associations]
symbol:mRpL3 "mitochondrial ribosomal protein L3"
species:7227 "Drosophila melanogaster" [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0005763 "mitochondrial small ribosomal subunit"
evidence=ISS] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
GO:GO:0006412 GO:GO:0005762 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
EMBL:AY119240 ProteinModelPortal:Q8MRV7 SMR:Q8MRV7 IntAct:Q8MRV7
STRING:Q8MRV7 PaxDb:Q8MRV7 PRIDE:Q8MRV7 FlyBase:FBgn0030686
InParanoid:Q8MRV7 OrthoDB:EOG4JM655 ArrayExpress:Q8MRV7 Bgee:Q8MRV7
Uniprot:Q8MRV7
Length = 362
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 62/177 (35%), Positives = 91/177 (51%)
Query: 89 EGNIVTQVKTEAT-DGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSID 147
E + QV T A + +G LTK G + SG++P ++L F +
Sbjct: 139 EEYLPAQVPTVANLHKRGCILVGSETTNPALLTKEYAGIFRNSGVLPKKNLARFIVSPEA 198
Query: 148 GFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIG 206
G L F GD VDV G T+ GFQG +KRH F+ +HG +K+HR+ G+IG
Sbjct: 199 QLAPGTPLNVNH-FRVGDFVDVRGKTVDHGFQGVVKRHGFKGMPASHGVTKTHRRAGNIG 257
Query: 207 AGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGA-VPGKPGNLLRV 262
G GRV+ G KMPG MG R I+ L++ +I+ V+ ++G+ V G G L+ +
Sbjct: 258 GGGEKGRVWPGTKMPGHMGNRWRIIKGLRVWRINTKYNVMWVQGSSVAGPTGGLVYI 314
>UNIPROTKB|F1NVG6 [details] [associations]
symbol:MRPL3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IEA]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005762 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 OMA:HGSVPGH GeneTree:ENSGT00390000011422
EMBL:AADN02001221 IPI:IPI00574225 PRIDE:F1NVG6
Ensembl:ENSGALT00000018940 Uniprot:F1NVG6
Length = 348
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 66/219 (30%), Positives = 112/219 (51%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDA-VQIGYRRVRDKK 118
+GV+ KLGMM + ++ +++ V E + G A + +G + V
Sbjct: 98 VGVVAVKLGMMPIWTKSGKKHAVTLLKVQDCHVLKYVSKEDSGGKTAKLLVGGKNVSPFS 157
Query: 119 LTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGF 178
++ E+ +++G+ + + F + + G L + F G +VDV+ TIGKGF
Sbjct: 158 KSEAEMEIFREAGVPRKQKVTTFNVTDDAIIKPGTPL-YAAHFRPGQIVDVTAKTIGKGF 216
Query: 179 QGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIV 237
QG +KR F+ +HG +K+HR+ G+I RV+ GKKMPG+MG R LK+
Sbjct: 217 QGVMKRWGFKGQPASHGQTKTHRRPGAISTNKV-SRVFPGKKMPGKMGNIYRTSFGLKVW 275
Query: 238 KIDNDLRVVMIKGAVPGKPGNLLRVAPAKI-VGKNIPKN 275
+I+ ++ + G+VPG L++V K+ V K+ KN
Sbjct: 276 RINTKHDIIYVHGSVPGHTNCLVKVRDTKLRVYKDCNKN 314
>TIGR_CMR|NSE_0266 [details] [associations]
symbol:NSE_0266 "ribosomal protein L3" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:CP000237
GenomeReviews:CP000237_GR InterPro:IPR009000 SUPFAM:SSF50447
eggNOG:COG0087 HOGENOM:HOG000100368 KO:K02906 InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
ProtClustDB:PRK00001 RefSeq:YP_506157.1 ProteinModelPortal:Q2GED9
STRING:Q2GED9 GeneID:3931338 KEGG:nse:NSE_0266 PATRIC:22680623
OMA:CKLYESR BioCyc:NSEN222891:GHFU-293-MONOMER Uniprot:Q2GED9
Length = 210
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 67/196 (34%), Positives = 98/196 (50%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKL 119
+G++ K+G S ++ E N+V + E DG ++ + +KL
Sbjct: 4 VGLLLKKVGCTSVYDDRFSLVPITLLQLEE-NVV--LSAEERDGVVIARVSFGT---RKL 57
Query: 120 TKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQ 179
+P+ L+K GL + EFR+ E L E F G VD GT+IGKGF
Sbjct: 58 KRPQSACLKKLGLEKGGRVVEFRVSPRFMPEPLGSLTVEH-FRPGQYVDAVGTSIGKGFA 116
Query: 180 GGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVK 238
G +KRHNF +HG S SHR GS G PG+V+KGKKM G MG I+ L +
Sbjct: 117 GVMKRHNFAGLRASHGVSISHRSGGSTGQCQDPGKVFKGKKMAGHMGNARVTIQNLLVQL 176
Query: 239 IDNDLRVVMIKGAVPG 254
+D + ++ ++G+VPG
Sbjct: 177 VDVENCLIGVRGSVPG 192
>UNIPROTKB|Q3ZBX6 [details] [associations]
symbol:MRPL3 "39S ribosomal protein L3, mitochondrial"
species:9913 "Bos taurus" [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=ISS] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
GO:GO:0006412 GO:GO:0005762 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 OMA:HGSVPGH PDB:2FTC PDBsum:2FTC
EMBL:BC103047 IPI:IPI00700936 RefSeq:NP_001073786.1
UniGene:Bt.61013 ProteinModelPortal:Q3ZBX6 STRING:Q3ZBX6
PRIDE:Q3ZBX6 Ensembl:ENSBTAT00000043792 GeneID:614906
KEGG:bta:614906 CTD:11222 GeneTree:ENSGT00390000011422
HOGENOM:HOG000100369 HOVERGEN:HBG002294 InParanoid:Q3ZBX6
OrthoDB:EOG4548ZW EvolutionaryTrace:Q3ZBX6 NextBio:20899349
Uniprot:Q3ZBX6
Length = 348
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 71/222 (31%), Positives = 111/222 (50%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDG-YDAVQIGYRRV-RDK 117
+G++ KLGMM + ++ +++ E +G A+ +G + V R
Sbjct: 97 VGLVALKLGMMPLWTKDGKKHVVTLLQVQDCHVLKYTPKENHNGKMAALTVGGKTVSRFH 156
Query: 118 KLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKG 177
K T L Q+ GL P + ++ F + + G L + F G VDV+ TIGKG
Sbjct: 157 KSTSI-LEFYQELGLPPKQKIKMFNVTDNAVIKPGTPL-YAAHFRPGQYVDVTAKTIGKG 214
Query: 178 FQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKI 236
FQG +KR F+ THG +K+HR+ G+I G RV+ G KMPG++G R LK+
Sbjct: 215 FQGVMKRWGFKGQPATHGQTKTHRRPGAISTGDV-ARVWPGTKMPGQLGNVDRTAFGLKV 273
Query: 237 VKIDNDLRVVMIKGAVPGKPGNLLR----VAPA-KIVGKNIP 273
+I+ ++ + G+VPG L++ V PA K KN+P
Sbjct: 274 WRINTKHNIIYVNGSVPGHRNCLVKIKDSVLPAYKDFCKNLP 315
>UNIPROTKB|E2R429 [details] [associations]
symbol:MRPL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005762 "mitochondrial large ribosomal
subunit" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005762 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 OMA:HGSVPGH GeneTree:ENSGT00390000011422
EMBL:AAEX03013594 RefSeq:XP_003639871.1 Ensembl:ENSCAFT00000009917
GeneID:100856435 KEGG:cfa:100856435 NextBio:20852613 Uniprot:E2R429
Length = 348
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 71/222 (31%), Positives = 111/222 (50%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDG-YDAVQIGYRRV-RDK 117
+G++ KLGMM + ++ +++ E +G A+ +G + V R
Sbjct: 97 VGLIALKLGMMPLWTKDGKRHVVTLLQVQDCHVLKYTPKENHNGKMAALTVGGKTVSRFH 156
Query: 118 KLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKG 177
K T L Q+ GL P + ++ F + + G L + F G VDV+ TIGKG
Sbjct: 157 KSTSV-LEFYQELGLPPKQKVKIFHVTDNAVIKPGTPL-YAAHFRPGQYVDVTAKTIGKG 214
Query: 178 FQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKI 236
FQG +KR F+ THG +K+HR+ G+I G RV+ G KMPG+MG R LK+
Sbjct: 215 FQGVMKRWGFKGQPATHGQTKTHRRPGAISTGDV-ARVWPGTKMPGQMGNKDRTEYGLKV 273
Query: 237 VKIDNDLRVVMIKGAVPGKPGNLLRVA----PA-KIVGKNIP 273
+I+ ++ + G+VPG L+++ PA K KN+P
Sbjct: 274 WRINTKNNIIYVNGSVPGHRNCLVKIRDSNLPAYKDFCKNLP 315
>UNIPROTKB|K7GPJ6 [details] [associations]
symbol:LOC100156322 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000597 InterPro:IPR019927
Pfam:PF00297 InterPro:IPR009000 SUPFAM:SSF50447 InterPro:IPR019926
PANTHER:PTHR11229 TIGRFAMs:TIGR03625 PROSITE:PS00474
GeneTree:ENSGT00390000011422 EMBL:CU469190
Ensembl:ENSSSCT00000035743 Uniprot:K7GPJ6
Length = 348
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 64/219 (29%), Positives = 109/219 (49%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDG-YDAVQIGYRRVRDKK 118
+G++ KLGMM + ++ +++ E +G A+ +G + V
Sbjct: 97 VGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTPKENHNGRMAALTVGGKTVSHFH 156
Query: 119 LTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGF 178
+ L Q+ GL P + ++ F + + G L + F G VDV+ TIGKGF
Sbjct: 157 KSASILEFYQELGLPPKQKVKIFNVTENAVIKPGTPL-YAAHFRPGQYVDVTAKTIGKGF 215
Query: 179 QGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIV 237
QG ++R F+ THG +K+HR+ G+I G RV+ G KMPG++G R LK+
Sbjct: 216 QGVMRRWGFKGQPATHGQTKTHRRPGAISTGDV-ARVWPGTKMPGQLGNIDRTAFGLKVW 274
Query: 238 KIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG-KNIPKN 275
+I+ ++ + G+VPG L+++ +K+ K+ KN
Sbjct: 275 RINTKHNIIYVNGSVPGHKNCLVKIKDSKLPAYKDFCKN 313
>MGI|MGI:2137204 [details] [associations]
symbol:Mrpl3 "mitochondrial ribosomal protein L3"
species:10090 "Mus musculus" [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISO] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 EMBL:AB049633
MGI:MGI:2137204 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 OMA:HGSVPGH CTD:11222 GeneTree:ENSGT00390000011422
HOGENOM:HOG000100369 HOVERGEN:HBG002294 OrthoDB:EOG4548ZW
EMBL:AK077857 EMBL:AK145687 EMBL:AK169272 EMBL:BC034877
IPI:IPI00118235 RefSeq:NP_444389.2 UniGene:Mm.29746
ProteinModelPortal:Q99N95 SMR:Q99N95 IntAct:Q99N95 STRING:Q99N95
PhosphoSite:Q99N95 PaxDb:Q99N95 PRIDE:Q99N95
Ensembl:ENSMUST00000035177 GeneID:94062 KEGG:mmu:94062
UCSC:uc009rht.1 InParanoid:Q99N95 NextBio:352033 Bgee:Q99N95
CleanEx:MM_MRPL3 Genevestigator:Q99N95
GermOnline:ENSMUSG00000032563 Uniprot:Q99N95
Length = 348
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 68/223 (30%), Positives = 111/223 (49%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDG-YDAVQIGYRRVRDKK 118
+G++ KLGMM + ++ +++ E +G A+ +G + V +
Sbjct: 97 VGLIALKLGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKEDHNGKIAALTVGGKTV--SR 154
Query: 119 LTKPE--LGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGK 176
KP+ L + GL P + + F + + G L + F G VDV+ TIGK
Sbjct: 155 FYKPDSRLEFYRDLGLPPKQIHKIFHVTDNAVIKPGTPL-YAAHFRPGQYVDVTAKTIGK 213
Query: 177 GFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLK 235
GFQG +KR F+ +HG +K+HR+ G+I G RV+ G KMPGRMG R + LK
Sbjct: 214 GFQGVMKRWGFKGQPASHGQTKTHRRPGAISTGDI-ARVWPGTKMPGRMGNQNRTVYGLK 272
Query: 236 IVKIDNDLRVVMIKGAVPGKPGNLLRVA----PA-KIVGKNIP 273
+ +++ ++ + G+VPG L+++ PA K KN+P
Sbjct: 273 VWRVNTKHNIIYVNGSVPGHKNCLVKIKDSTLPAYKDSCKNLP 315
>UNIPROTKB|F1RX24 [details] [associations]
symbol:LOC100156322 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005762 "mitochondrial large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005762 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 GeneTree:ENSGT00390000011422 EMBL:CU469190
RefSeq:XP_001925073.2 UniGene:Ssc.54078 Ensembl:ENSSSCT00000012242
GeneID:100156322 KEGG:ssc:100156322 OMA:LLQXKSP Uniprot:F1RX24
Length = 399
Score = 240 (89.5 bits), Expect = 6.0e-20, P = 6.0e-20
Identities = 64/219 (29%), Positives = 109/219 (49%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDG-YDAVQIGYRRVRDKK 118
+G++ KLGMM + ++ +++ E +G A+ +G + V
Sbjct: 148 VGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTPKENHNGRMAALTVGGKTVSHFH 207
Query: 119 LTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGF 178
+ L Q+ GL P + ++ F + + G L + F G VDV+ TIGKGF
Sbjct: 208 KSASILEFYQELGLPPKQKVKIFNVTENAVIKPGTPL-YAAHFRPGQYVDVTAKTIGKGF 266
Query: 179 QGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIV 237
QG ++R F+ THG +K+HR+ G+I G RV+ G KMPG++G R LK+
Sbjct: 267 QGVMRRWGFKGQPATHGQTKTHRRPGAISTGDV-ARVWPGTKMPGQLGNIDRTAFGLKVW 325
Query: 238 KIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG-KNIPKN 275
+I+ ++ + G+VPG L+++ +K+ K+ KN
Sbjct: 326 RINTKHNIIYVNGSVPGHKNCLVKIKDSKLPAYKDFCKN 364
>TIGR_CMR|CJE_1875 [details] [associations]
symbol:CJE_1875 "ribosomal protein L3" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
GO:GO:0006412 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
HOGENOM:HOG000100368 KO:K02906 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
ProtClustDB:PRK00001 RefSeq:YP_179845.1 ProteinModelPortal:Q5HS90
STRING:Q5HS90 GeneID:3232518 KEGG:cjr:CJE1875 PATRIC:20045582
OMA:SIGNCEW BioCyc:CJEJ195099:GJC0-1914-MONOMER Uniprot:Q5HS90
Length = 191
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 59/174 (33%), Positives = 86/174 (49%)
Query: 93 VTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAG 152
V K +G A+ + Y + K K G +K L F + EAG
Sbjct: 26 VVNAKVCEVEGGKAL-VAYPK--GKASNKCVAGQQKKYNL--SAEYNRFATLEVANTEAG 80
Query: 153 QKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPG 212
E NE ++ VS T G+G+ G +KRHNF G +HGS+ HR+ GSIG PG
Sbjct: 81 D--LDETPLNEAKILKVSFNTKGRGYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPG 138
Query: 213 RVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAK 266
RV G KM G G T ++ ++V D + +++++KGAVPG G + ++ AK
Sbjct: 139 RVQPGMKMAGHYGNTKVTVKN-EVVSYDAENKILVVKGAVPGYNGAMGKIRIAK 191
>RGD|1306391 [details] [associations]
symbol:Mrpl3 "mitochondrial ribosomal protein L3" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005762 "mitochondrial large ribosomal subunit"
evidence=IEA;ISO;ISS] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 RGD:1306391
GO:GO:0006412 GO:GO:0005762 GO:GO:0003735 InterPro:IPR009000
SUPFAM:SSF50447 eggNOG:COG0087 InterPro:IPR019926 PANTHER:PTHR11229
TIGRFAMs:TIGR03625 PROSITE:PS00474 HOGENOM:HOG000100369
HOVERGEN:HBG002294 OrthoDB:EOG4548ZW IPI:IPI00193636 PIR:S05472
UniGene:Rn.6950 ProteinModelPortal:P18665 STRING:P18665
PhosphoSite:P18665 PRIDE:P18665 UCSC:RGD:1306391 InParanoid:P18665
Genevestigator:P18665 GermOnline:ENSRNOG00000012650 Uniprot:P18665
Length = 347
Score = 216 (81.1 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 65/223 (29%), Positives = 110/223 (49%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDA-VQIGYRRVRDKK 118
+G++ KLGMM + ++ +++ E +G A + +G + +
Sbjct: 97 VGLIALKLGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKEDHNGKTATLTVGGKT--GSR 154
Query: 119 LTKPE--LGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGK 176
L K L + GL P + + F + + G L + F G VDV+ TIGK
Sbjct: 155 LYKANSILEFYRDLGLPPKQTTKIFHVTDNAVIKQGTPL-YAAHFRPGQYVDVTAKTIGK 213
Query: 177 GFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLK 235
GFQG +KR F+ +HG +K+HR+ G+I G RV+ G KMPG+MG R + LK
Sbjct: 214 GFQGVMKRWGFKGQPASHGQTKTHRRPGAISTGDI-ARVWPGTKMPGKMGNQNRTVYGLK 272
Query: 236 IVKIDNDLRVVMIKGAVPGKPGNLLRVA----PA-KIVGKNIP 273
+ +++ ++ + G+V G L+++ PA K +GK++P
Sbjct: 273 VWRVNTKHNIIYVNGSV-GHRNCLVKIKDSTLPAYKDLGKSLP 314
>UNIPROTKB|P18665 [details] [associations]
symbol:Mrpl3 "39S ribosomal protein L3, mitochondrial"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
RGD:1306391 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735
InterPro:IPR009000 SUPFAM:SSF50447 eggNOG:COG0087
InterPro:IPR019926 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
PROSITE:PS00474 HOGENOM:HOG000100369 HOVERGEN:HBG002294
OrthoDB:EOG4548ZW IPI:IPI00193636 PIR:S05472 UniGene:Rn.6950
ProteinModelPortal:P18665 STRING:P18665 PhosphoSite:P18665
PRIDE:P18665 UCSC:RGD:1306391 InParanoid:P18665
Genevestigator:P18665 GermOnline:ENSRNOG00000012650 Uniprot:P18665
Length = 347
Score = 216 (81.1 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 65/223 (29%), Positives = 110/223 (49%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDA-VQIGYRRVRDKK 118
+G++ KLGMM + ++ +++ E +G A + +G + +
Sbjct: 97 VGLIALKLGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKEDHNGKTATLTVGGKT--GSR 154
Query: 119 LTKPE--LGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGK 176
L K L + GL P + + F + + G L + F G VDV+ TIGK
Sbjct: 155 LYKANSILEFYRDLGLPPKQTTKIFHVTDNAVIKQGTPL-YAAHFRPGQYVDVTAKTIGK 213
Query: 177 GFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLK 235
GFQG +KR F+ +HG +K+HR+ G+I G RV+ G KMPG+MG R + LK
Sbjct: 214 GFQGVMKRWGFKGQPASHGQTKTHRRPGAISTGDI-ARVWPGTKMPGKMGNQNRTVYGLK 272
Query: 236 IVKIDNDLRVVMIKGAVPGKPGNLLRVA----PA-KIVGKNIP 273
+ +++ ++ + G+V G L+++ PA K +GK++P
Sbjct: 273 VWRVNTKHNIIYVNGSV-GHRNCLVKIKDSTLPAYKDLGKSLP 314
>GENEDB_PFALCIPARUM|PFL2180w [details] [associations]
symbol:PFL2180w "50S ribosomal protein L3,
putative" species:5833 "Plasmodium falciparum" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005762 GO:GO:0003735 EMBL:AE014188 InterPro:IPR009000
SUPFAM:SSF50447 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
RefSeq:XP_001350840.1 ProteinModelPortal:Q8I4X7
EnsemblProtists:PFL2180w:mRNA GeneID:811488 KEGG:pfa:PFL2180w
EuPathDB:PlasmoDB:PF3D7_1245400 HOGENOM:HOG000283540
ProtClustDB:CLSZ2434839 Uniprot:Q8I4X7
Length = 341
Score = 206 (77.6 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 59/217 (27%), Positives = 107/217 (49%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLT 120
G++G K+G MS ++ ++ Q KT + +GY+A+++G + K +
Sbjct: 82 GLLGYKVGCMSIWDVWGVKHAVTVVKIDNCYVINQ-KTISKNGYEALELGVGNMNVIKQS 140
Query: 121 KPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQG 180
K +G+ K L + ++EF+ S K + F+ G + +S KGF G
Sbjct: 141 KNNIGNFIKRKLGFIHKIKEFKCTSDCFLPIHHKFSCRH-FSPGQNLFISSGIKNKGFCG 199
Query: 181 GIKRHNFRRGAMTHG--SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTR-KIRKLKIV 237
+K+ NF +HG SK+HR LGS+ G T V++ KKM +G + K K+
Sbjct: 200 AMKKWNFSGKNKSHGTESKAHRSLGSVSMGKTINIVFRNKKMNTHIGEKSLVKCSNNKLF 259
Query: 238 KIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPK 274
+I++ ++ IKG + G +++++ AK G++ K
Sbjct: 260 RINSLKNLLFIKGTIGGYKNKVIKISDAK--GRSFNK 294
>UNIPROTKB|Q8I4X7 [details] [associations]
symbol:PFL2180w "Mitochondrial ribosomal protein L3,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISS]
InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297 GO:GO:0006412
GO:GO:0005762 GO:GO:0003735 EMBL:AE014188 InterPro:IPR009000
SUPFAM:SSF50447 PANTHER:PTHR11229 TIGRFAMs:TIGR03625
RefSeq:XP_001350840.1 ProteinModelPortal:Q8I4X7
EnsemblProtists:PFL2180w:mRNA GeneID:811488 KEGG:pfa:PFL2180w
EuPathDB:PlasmoDB:PF3D7_1245400 HOGENOM:HOG000283540
ProtClustDB:CLSZ2434839 Uniprot:Q8I4X7
Length = 341
Score = 206 (77.6 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 59/217 (27%), Positives = 107/217 (49%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLT 120
G++G K+G MS ++ ++ Q KT + +GY+A+++G + K +
Sbjct: 82 GLLGYKVGCMSIWDVWGVKHAVTVVKIDNCYVINQ-KTISKNGYEALELGVGNMNVIKQS 140
Query: 121 KPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQG 180
K +G+ K L + ++EF+ S K + F+ G + +S KGF G
Sbjct: 141 KNNIGNFIKRKLGFIHKIKEFKCTSDCFLPIHHKFSCRH-FSPGQNLFISSGIKNKGFCG 199
Query: 181 GIKRHNFRRGAMTHG--SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTR-KIRKLKIV 237
+K+ NF +HG SK+HR LGS+ G T V++ KKM +G + K K+
Sbjct: 200 AMKKWNFSGKNKSHGTESKAHRSLGSVSMGKTINIVFRNKKMNTHIGEKSLVKCSNNKLF 259
Query: 238 KIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPK 274
+I++ ++ IKG + G +++++ AK G++ K
Sbjct: 260 RINSLKNLLFIKGTIGGYKNKVIKISDAK--GRSFNK 294
>WB|WBGene00016142 [details] [associations]
symbol:mrps-18C species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
GO:GO:0005739 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0006412 GO:GO:0000003
GO:GO:0005840 GO:GO:0003735 InterPro:IPR009000 SUPFAM:SSF50447
EMBL:FO080680 eggNOG:COG0087 PANTHER:PTHR11229 PROSITE:PS00474
GeneTree:ENSGT00390000011422 PIR:C88445 RefSeq:NP_498045.2
ProteinModelPortal:P49404 SMR:P49404 STRING:P49404 PaxDb:P49404
PRIDE:P49404 EnsemblMetazoa:C26E6.6 GeneID:175666
KEGG:cel:CELE_C26E6.6 UCSC:C26E6.6 CTD:175666 WormBase:C26E6.6
HOGENOM:HOG000021416 InParanoid:P49404 OMA:DNHVIRY NextBio:889130
Uniprot:P49404
Length = 403
Score = 206 (77.6 bits), Expect = 4.0e-16, P = 4.0e-16
Identities = 54/145 (37%), Positives = 80/145 (55%)
Query: 120 TKPELGHLQ---KSGLIPMRHLQEFRLQSIDGF-EAGQKLAFEEIFNEGDLVDVSGTTIG 175
TK LG+ + ++G IP++ L + D AGQ L F G V +G TI
Sbjct: 175 TKYTLGYRRQFVRAG-IPVKEKLGCFLVTEDALPSAGQPLDARH-FGVGQYVTATGKTID 232
Query: 176 KGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLK 235
GFQGG+ R R +KSHR++GS+G+ R++ GK+MPG MG R + L+
Sbjct: 233 WGFQGGMHRWGMRGQPTRRTTKSHRRIGSVGS-VGDARIWPGKRMPGHMGYEWRTVSGLE 291
Query: 236 IVKIDNDLRVVMIKGAVPGKPGNLL 260
IV+I+ D +V+ +KG+VPG G +
Sbjct: 292 IVRINVDKQVIYVKGSVPGDIGETI 316
>UNIPROTKB|D6RC14 [details] [associations]
symbol:MRPL3 "39S ribosomal protein L3, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR000597 InterPro:IPR019927 Pfam:PF00297
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
InterPro:IPR009000 SUPFAM:SSF50447 InterPro:IPR019926
PANTHER:PTHR11229 PROSITE:PS00474 HOGENOM:HOG000100369
HGNC:HGNC:10379 EMBL:AC107027 IPI:IPI00794210
ProteinModelPortal:D6RC14 SMR:D6RC14 Ensembl:ENST00000507669
ArrayExpress:D6RC14 Bgee:D6RC14 Uniprot:D6RC14
Length = 155
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 47/136 (34%), Positives = 73/136 (53%)
Query: 91 NIVTQVKTEATDGYDA-VQIGYRRV-RDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDG 148
+++ E +G A + +G + V R +K T L ++ GL P + ++ F +
Sbjct: 23 HVLKYTSKENCNGKMATLSVGGKTVSRFRKATSI-LEFYRELGLPPKQTVKIFNITDNAA 81
Query: 149 FEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGA 207
+ G L + F G VDV+ TIGKGFQG +KR F+ THG +K+HR+ G++
Sbjct: 82 IKPGTPL-YAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVAT 140
Query: 208 GTTPGRVYKGKKMPGR 223
G GRV+ G KMPG+
Sbjct: 141 GDI-GRVWPGTKMPGK 155
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.138 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 275 263 0.00091 114 3 11 22 0.48 33
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 41
No. of states in DFA: 563 (60 KB)
Total size of DFA: 160 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.38u 0.10s 20.48t Elapsed: 00:00:00
Total cpu time: 20.39u 0.10s 20.49t Elapsed: 00:00:00
Start: Sat May 11 02:37:41 2013 End: Sat May 11 02:37:41 2013