BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023905
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BBO|F Chain F, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 259
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/237 (78%), Positives = 206/237 (86%), Gaps = 4/237 (1%)
Query: 43 TTKRTTTHI----VSMSYEAGIGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKT 98
T K T+ HI +S S EAG+GVM TKLGMMS+FE FREGNIVTQ+KT
Sbjct: 23 THKPTSLHISKSSISASLEAGVGVMATKLGMMSFFEESGTVVPVTVVGFREGNIVTQIKT 82
Query: 99 EATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFE 158
EATDGY+AVQ+GYRRVRD+KLTKPE+GHL+KSG+IP+RHLQEFRLQSIDGFE QKL F
Sbjct: 83 EATDGYNAVQVGYRRVRDRKLTKPEMGHLEKSGIIPLRHLQEFRLQSIDGFEVTQKLDFG 142
Query: 159 EIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGK 218
E+F EGDLVDVSGTTIGKGFQGGIKRHNF+RG MTHGSKSHRQLGSIGAGTTPGRVYKGK
Sbjct: 143 ELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRQLGSIGAGTTPGRVYKGK 202
Query: 219 KMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPKN 275
KMPGRMGGT RKIRKLKIVKID+ L ++MIKGA+PGKPGNLLR+APAKIVGKNIPK+
Sbjct: 203 KMPGRMGGTKRKIRKLKIVKIDDQLNIIMIKGALPGKPGNLLRIAPAKIVGKNIPKS 259
>pdb|1P85|B Chain B, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P86|B Chain B, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AW4|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AWB|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|1VS6|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS8|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2GYA|B Chain B, Structure Of The 50s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYC|B Chain B, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
pdb|2I2T|D Chain D, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2V|D Chain D, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2J28|D Chain D, Model Of E. Coli Srp Bound To 70s Rncs
pdb|2QOV|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The First 70s Ribosome.
The Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|2QOX|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The Second 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QOZ|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
First 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QP1|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QAM|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAO|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBA|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBC|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBE|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
First 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QBG|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QBI|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The First 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBK|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The Second 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4L|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The First 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
pdb|2Z4N|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The Second 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
pdb|2VHM|D Chain D, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 1 Of 4)
pdb|2VHN|D Chain D, Structure Of Pdf Binding Helix In Complex With The
Ribosome. (Part 2 Of 4)
pdb|2RDO|D Chain D, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
pdb|3DF2|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 50s Subunit Of The First 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|3DF4|D Chain D, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 50s Subunit Of The Second 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|3BBX|D Chain D, The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em
Map 50s.Nc-Trna.Hsp15 Complex
pdb|3FIK|D Chain D, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 50s Subunit.
pdb|3IY9|C Chain C, Leishmania Tarentolae Mitochondrial Large Ribosomal
Subunit Model
pdb|3E1B|Y Chain Y, Structure Of The 50s Subunit Of E. Coli Ribosome In
Pre-Accommodation State
pdb|3E1D|Y Chain Y, Structure Of The 50s Subunit Of E. Coli Ribosome In
Post-Accommodation State
pdb|3I1N|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1P|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1R|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1T|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I20|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I22|D Chain D, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KCR|D Chain D, Ribosome-Secy Complex. This Entry 3kcr Contains 50s
Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found
In Pdb Entry 3kc4
pdb|2WWQ|D Chain D, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 50s, The P-Site
Trna And The Tnac Leader Peptide (Part 2 Of 2).
pdb|1VT2|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3ORB|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The First
70s Ribosome Bound To Cem-101.
pdb|3OFQ|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OFR|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Erthromycin Bound.
pdb|3OFC|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The First 70s Ribosome With Chloramphenicol Bound.
pdb|3OFD|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The Second 70s Ribosome.
pdb|3OFZ|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
First 70s Ribosome Bound To Clindamycin.
pdb|3OG0|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAS|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAT|D Chain D, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Telithromycin Bound.
pdb|3IZT|E Chain E, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A
Near-Cognate Codon.
pdb|3IZU|E Chain E, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A Cognate
Codon
pdb|3J01|D Chain D, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|3R8S|D Chain D, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3R8T|D Chain D, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3SGF|D Chain D, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOS|D Chain D, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|3J0T|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0W|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0Y|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J11|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 3 Of The Six
Classes)
pdb|3J12|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J14|E Chain E, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 6 Of The Six
Classes)
pdb|3J19|D Chain D, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(50s Subunit)
pdb|4GAR|D Chain D, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAU|D Chain D, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 209
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 123/207 (59%), Gaps = 3/207 (1%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKL 119
IG++G K+GM F E N VTQVK A DGY A+Q+ + ++
Sbjct: 2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRV 60
Query: 120 TKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQ 179
TKPE GH K+G+ R L EFRL + F GQ ++ E +F + VDV+GT+ GKGF
Sbjct: 61 TKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVE-LFADVKKVDVTGTSKGKGFA 119
Query: 180 GGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVK 238
G +KR NFR THG S SHR GSIG TPG+V+KGKKM G+MG ++ L +V+
Sbjct: 120 GTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVR 179
Query: 239 IDNDLRVVMIKGAVPGKPGNLLRVAPA 265
+D + ++++KGAVPG G+ L V PA
Sbjct: 180 VDAERNLLLVKGAVPGATGSDLIVKPA 206
>pdb|1PNU|B Chain B, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
Trna Are In The Pdb File 1pns.
pdb|1PNY|B Chain B, Crystal Structure Of The Wild Type Ribosome From E. Coli,
50s Subunit Of 70s Ribosome. This File, 1pny, Contains
Only Molecules Of The 50s Ribosomal Subunit. The 30s
Subunit Is In The Pdb File 1pnx.
pdb|1VOR|E Chain E, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOU|E Chain E, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOW|E Chain E, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOY|E Chain E, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VP0|E Chain E, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400
Length = 205
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 8/201 (3%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLT 120
G++GTK+GM ++ + Q KT TDGY+AVQIGY ++K+
Sbjct: 3 GILGTKIGMTQIWKNDRAIPVTVV--LAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKVN 60
Query: 121 KPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQG 180
KP GH K+G+ P R L+EFR GF +IF EG+ +D +GT+ GKG QG
Sbjct: 61 KPMQGHFAKAGVAPTRILREFR-----GFAPDGDSVNVDIFAEGEKIDATGTSKGKGTQG 115
Query: 181 GIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
+KR NF G +HGSK HR+ GSIG TPGRVYKGK+M G MG ++ L++V+I
Sbjct: 116 VMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVEI 175
Query: 240 DNDLRVVMIKGAVPGKPGNLL 260
++++KGA+PG G L+
Sbjct: 176 RAGENLILVKGAIPGANGGLV 196
>pdb|1NKW|B Chain B, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
pdb|1NWX|B Chain B, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
pdb|1NWY|B Chain B, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
pdb|1SM1|B Chain B, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
pdb|1XBP|B Chain B, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
pdb|2OGM|B Chain B, The Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans Complexed With The Pleuromutilin
Derivative Sb-571519
pdb|2OGN|B Chain B, The Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans Complexed With The Pleuromutilin
Derivative Sb-280080
pdb|2OGO|B Chain B, The Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans Complexed With The Pleuromutilin
Derivative Retapamulin (Sb-275833)
pdb|2ZJP|B Chain B, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|2ZJQ|B Chain B, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
pdb|2ZJR|B Chain B, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
pdb|3CF5|B Chain B, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|3DLL|B Chain B, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
pdb|3PIO|B Chain B, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
pdb|3PIP|B Chain B, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
Length = 211
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 117/201 (58%), Gaps = 8/201 (3%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLT 120
G++GTK+GM ++ + Q KT TDGY+AVQIGY ++K+
Sbjct: 3 GILGTKIGMTQIWKNDRAIPVTVV--LAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKVN 60
Query: 121 KPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQG 180
KP GH K+G+ P R L+EFR GF +IF EG+ +D +GT+ GKG QG
Sbjct: 61 KPMQGHFAKAGVAPTRILREFR-----GFAPDGDSVNVDIFAEGEKIDATGTSKGKGTQG 115
Query: 181 GIKRHNFRRGAMTHGSKS-HRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
+KR NF G +HGSK HR+ GSIG TPGRVYKGK+M G MG ++ L++V+I
Sbjct: 116 VMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVEI 175
Query: 240 DNDLRVVMIKGAVPGKPGNLL 260
++++KGA+PG G L+
Sbjct: 176 RAGENLILVKGAIPGANGGLV 196
>pdb|2J01|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
pdb|2J03|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
pdb|2HGJ|E Chain E, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|E Chain E, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|E Chain E, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|1VSA|C Chain C, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|2V47|E Chain E, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2V49|E Chain E, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
pdb|1VSP|C Chain C, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3D5B|E Chain E, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|E Chain E, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|E Chain E, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|E Chain E, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400.
pdb|2WDI|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|E Chain E, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH4|E Chain E, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|3HUX|E Chain E, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|E Chain E, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|E Chain E, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
pdb|2WRL|E Chain E, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|E Chain E, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|E Chain E, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|E Chain E, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|E Chain E, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|E Chain E, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|E Chain E, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|E Chain E, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule I
pdb|3KNK|E Chain E, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|E Chain E, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|E Chain E, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|3I8F|E Chain E, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8I|E Chain E, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9C|E Chain E, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule B.
The 30s Subunit Can Be Found In Pdb Entry 3i9b. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
pdb|3I9E|E Chain E, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule A.
The 30s Subunit Can Be Found In Pdb Entry 3i9d. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
pdb|2X9S|E Chain E, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|E Chain E, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|3MRZ|D Chain D, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms0.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (50s) And 3ms1 (30s).
pdb|3MS1|D Chain D, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms1 Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3mr8.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s).
pdb|2XG0|E Chain E, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|E Chain E, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|3OH5|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OH7|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OHJ|E Chain E, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHK|E Chain E, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHZ|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI1|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI3|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI5|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQE|E Chain E, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XTG|E Chain E, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|E Chain E, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|E Chain E, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|E Chain E, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|E Chain E, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|E Chain E, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y13|E Chain E, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|E Chain E, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y17|E Chain E, Ef-Tu Complex 3
pdb|2Y19|E Chain E, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|3ZVP|E Chain E, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3UXQ|E Chain E, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXR|E Chain E, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UYE|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UYG|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UZ1|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin
pdb|3UZ2|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ8|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZ9|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZF|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZH|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex.
pdb|3UZK|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
pdb|3UZN|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
pdb|4ABS|E Chain E, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
pdb|4DHA|E Chain E, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHC|E Chain E, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V23|E Chain E, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V25|E Chain E, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|3V27|E Chain E, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V29|E Chain E, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
pdb|3V2D|E Chain E, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V2F|E Chain E, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|4G5L|E Chain E, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5N|E Chain E, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
pdb|4G5U|E Chain E, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5W|E Chain E, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B
Length = 206
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 111/211 (52%), Gaps = 8/211 (3%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLT 120
G++G K+GM F V Q +T DGY AVQ+G+ K++
Sbjct: 3 GILGVKVGMTRIFRDDRAVPVTVI--LAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVN 60
Query: 121 KPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQG 180
+P GH K+G+ P+R L+E R F EIF G+ VDV+GT+ G+GF G
Sbjct: 61 RPLKGHFAKAGVEPVRILREIR-----DFNPEGDTVTVEIFKPGERVDVTGTSKGRGFAG 115
Query: 181 GIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
+KR NF G +HG+ K HR GSIG TPGRVYKGKKM G G + L++V +
Sbjct: 116 VMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDV 175
Query: 240 DNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 270
+ ++++KGAVPG G L+ V K K
Sbjct: 176 IPEENLLLVKGAVPGPNGGLVIVRETKKAAK 206
>pdb|3PYO|D Chain D, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYR|D Chain D, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The Second 70s
Ribosome.
pdb|3PYT|D Chain D, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYV|D Chain D, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The Second 70s Ribosome
Length = 204
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 110/207 (53%), Gaps = 8/207 (3%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLT 120
G++G K+GM F V Q +T DGY AVQ+G+ K++
Sbjct: 3 GILGVKVGMTRIFRDDRAVPVTVI--LAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVN 60
Query: 121 KPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQG 180
+P GH K+G+ P+R L+E R F EIF G+ VDV+GT+ G+GF G
Sbjct: 61 RPLKGHFAKAGVEPVRILREIR-----DFNPEGDTVTVEIFKPGERVDVTGTSKGRGFAG 115
Query: 181 GIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
+KR NF G +HG+ K HR GSIG TPGRVYKGKKM G G + L++V +
Sbjct: 116 VMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDV 175
Query: 240 DNDLRVVMIKGAVPGKPGNLLRVAPAK 266
+ ++++KGAVPG G L+ V K
Sbjct: 176 IPEENLLLVKGAVPGPNGGLVIVRETK 202
>pdb|3FIN|E Chain E, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit.
pdb|3TVE|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVH|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 205
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 110/207 (53%), Gaps = 8/207 (3%)
Query: 61 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLT 120
G++G K+GM F V Q +T DGY AVQ+G+ K++
Sbjct: 3 GILGVKVGMTRIFRDDRAVPVTVI--LAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVN 60
Query: 121 KPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQG 180
+P GH K+G+ P+R L+E R F EIF G+ VDV+GT+ G+GF G
Sbjct: 61 RPLKGHFAKAGVEPVRILREIR-----DFNPEGDTVTVEIFKPGERVDVTGTSKGRGFAG 115
Query: 181 GIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
+KR NF G +HG+ K HR GSIG TPGRVYKGKKM G G + L++V +
Sbjct: 116 VMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDV 175
Query: 240 DNDLRVVMIKGAVPGKPGNLLRVAPAK 266
+ ++++KGAVPG G L+ V K
Sbjct: 176 IPEENLLLVKGAVPGPNGGLVIVRETK 202
>pdb|2FTC|C Chain C, Structural Model For The Large Subunit Of The Mammalian
Mitochondrial Ribosome
Length = 211
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 4/210 (1%)
Query: 60 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDA-VQIGYRRVRDKK 118
+G++ KLGMM + ++ +++ E +G A + +G + V +
Sbjct: 2 VGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFR 61
Query: 119 LTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGF 178
L ++ GL P + ++ F + + G L + F G VDV+ TIGKGF
Sbjct: 62 KATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPL-YAAHFRPGQYVDVTAKTIGKGF 120
Query: 179 QGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIV 237
QG +KR F+ THG +K+HR+ G++ G GRV+ G KMPG+MG R LK+
Sbjct: 121 QGVMKRWGFKGQPATHGQTKTHRRPGAVATGDI-GRVWPGTKMPGKMGNIYRTEYGLKVW 179
Query: 238 KIDNDLRVVMIKGAVPGKPGNLLRVAPAKI 267
+I+ ++ + G+VPG L++V +K+
Sbjct: 180 RINTKHNIIYVNGSVPGHKNCLVKVKDSKL 209
>pdb|3J21|C Chain C, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 365
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 28/140 (20%)
Query: 152 GQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTP 211
G++L E+ EG+L+DV T GKG QG +KR + A SK R++GSIG P
Sbjct: 204 GKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKD-SKGRRKVGSIGP-WHP 261
Query: 212 GRVYKGKKMPGRMGGTTRKIRKLKIV--------KIDNDLRV------------------ 245
RV M G+MG R +++ K+D + +
Sbjct: 262 ARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLKLDENTEIEITPKGGFPHYGIVRSDF 321
Query: 246 VMIKGAVPGKPGNLLRVAPA 265
+MI G+VPG ++RV PA
Sbjct: 322 MMIAGSVPGAIKRIIRVRPA 341
>pdb|1JJ2|B Chain B, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|B Chain B, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|D Chain D, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|D Chain D, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|D Chain D, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|D Chain D, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|D Chain D, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|D Chain D, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|D Chain D, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|D Chain D, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|D Chain D, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|D Chain D, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|D Chain D, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|D Chain D, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|D Chain D, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|B Chain B, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|B Chain B, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1W2B|B Chain B, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|2OTL|B Chain B, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|3CXC|B Chain B, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
pdb|3G4S|B Chain B, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|B Chain B, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|B Chain B, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
pdb|3OW2|B Chain B, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 337
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 144 QSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQL 202
++D E G + A +IF G+ DV+G T GKG QG +KR ++ H + R++
Sbjct: 177 HALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRI 236
Query: 203 GSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI----------------DNDLRVV 246
G++G P RV G+ G R +++ I + D
Sbjct: 237 GNLGP-WNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDGGFVNYGEVDGPYT 295
Query: 247 MIKGAVPGKPGNLLRVAPA 265
++KG+VPG L+R PA
Sbjct: 296 LVKGSVPGPDKRLVRFRPA 314
>pdb|1S72|B Chain B, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|B Chain B, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|B Chain B, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|B Chain B, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|B Chain B, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|B Chain B, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|B Chain B, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|B Chain B, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|B Chain B, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|B Chain B, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|B Chain B, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|B Chain B, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|B Chain B, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|B Chain B, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|B Chain B, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|B Chain B, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|B Chain B, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|B Chain B, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|B Chain B, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|B Chain B, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|B Chain B, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2QA4|B Chain B, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CC2|B Chain B, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|B Chain B, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|B Chain B, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|B Chain B, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|B Chain B, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|B Chain B, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|B Chain B, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|B Chain B, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3I55|B Chain B, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|B Chain B, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
pdb|4ADX|B Chain B, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 338
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 144 QSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQL 202
++D E G + A +IF G+ DV+G T GKG QG +KR ++ H + R++
Sbjct: 178 HALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRI 237
Query: 203 GSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI----------------DNDLRVV 246
G++G P RV G+ G R +++ I + D
Sbjct: 238 GNLGP-WNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDGGFVNYGEVDGPYT 296
Query: 247 MIKGAVPGKPGNLLRVAPA 265
++KG+VPG L+R PA
Sbjct: 297 LVKGSVPGPDKRLVRFRPA 315
>pdb|1GIY|E Chain E, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1ML5|EE Chain e, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1YL3|E Chain E, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4.
pdb|2B66|E Chain E, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf1, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400
pdb|2B9N|E Chain E, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf2, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400.
pdb|2B9P|E Chain E, 50s Ribosomal Subunit From A Crystal Structure Of The
Ribosome In Complex With Trnas And Mrna With A Stop
Codon In The A-Site. This File Contains The 50s Subunit
From A Crystal Structure Of The Ribosome In Complex With
Trnas And Mrna With A Stop Codon In The A-Site And Is
Described In Remark 400
Length = 338
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 144 QSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQL 202
++D E G + A +IF G+ DV+G T GKG QG +KR ++ H + R++
Sbjct: 177 HALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRI 236
Query: 203 GSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI----------------DNDLRVV 246
G++G P RV G+ G R +++ I + D
Sbjct: 237 GNLGP-WNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDGGFVNYGEVDGPYT 295
Query: 247 MIKGAVPG 254
++KG+VPG
Sbjct: 296 LVKGSVPG 303
>pdb|1FFK|B Chain B, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 337
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 144 QSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKS-HRQL 202
++D E G + A +IF G+ DV+G T GKG QG +KR ++ H + R++
Sbjct: 176 HALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRI 235
Query: 203 GSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI----------------DNDLRVV 246
G++G P RV G+ G R +++ I + D
Sbjct: 236 GNLGP-WNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDGGFVNYGEVDGPYT 294
Query: 247 MIKGAVPG 254
++KG+VPG
Sbjct: 295 LVKGSVPG 302
>pdb|4A17|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|B Chain B, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 391
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 15/106 (14%)
Query: 146 IDGFEAGQKLAF-----------EEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRR-GAMT 193
++G + +K+AF + IF E +++DV G T GKGF G IKR + T
Sbjct: 181 VNGGKVAEKVAFAKSLLEKEVKVDSIFAENEMLDVLGVTKGKGFAGVIKRFGVKHLQKKT 240
Query: 194 HGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
H + +R++G IGA P R+ G++G R K+ ++
Sbjct: 241 H--RGYRKVGCIGAW-HPSRIRFTVPRAGQLGYHHRTETNKKVYRV 283
>pdb|2ZKR|BB Chain b, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 403
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 132 LIPMR----HLQEFRL------QSIDGFEA--GQKLAFEEIFNEGDLVDVSGTTIGKGFQ 179
L+P+R HL E ++ + +D Q++ ++F + +++DV G T GKG++
Sbjct: 170 LLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYK 229
Query: 180 GGIKR-HNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVK 238
G R H + TH + R++ IGA P RV G+ G R KI K
Sbjct: 230 GVTSRWHTKKLPRKTH--RGLRKVACIGAW-HPARVAFSVARAGQKGYHHRTEINKKIYK 286
Query: 239 I 239
I
Sbjct: 287 I 287
>pdb|3IZR|C Chain C, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 389
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 158 EEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSH---RQLGSIGAGTTPGRV 214
E +F + ++VD+ G T GKG++G + R G K+H R++ IGA P RV
Sbjct: 209 EAVFQKDEMVDIIGVTKGKGYEGVVTRW----GVTRLPRKTHRGLRKVACIGAW-HPARV 263
>pdb|1FOU|A Chain A, Connector Protein From Bacteriophage Phi29
pdb|1FOU|B Chain B, Connector Protein From Bacteriophage Phi29
pdb|1FOU|C Chain C, Connector Protein From Bacteriophage Phi29
pdb|1FOU|D Chain D, Connector Protein From Bacteriophage Phi29
pdb|1FOU|E Chain E, Connector Protein From Bacteriophage Phi29
pdb|1FOU|F Chain F, Connector Protein From Bacteriophage Phi29
pdb|1FOU|G Chain G, Connector Protein From Bacteriophage Phi29
pdb|1FOU|H Chain H, Connector Protein From Bacteriophage Phi29
pdb|1FOU|I Chain I, Connector Protein From Bacteriophage Phi29
pdb|1FOU|J Chain J, Connector Protein From Bacteriophage Phi29
pdb|1FOU|K Chain K, Connector Protein From Bacteriophage Phi29
pdb|1FOU|L Chain L, Connector Protein From Bacteriophage Phi29
Length = 309
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 141 FRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHN----------FRRG 190
F+LQ+ E +++ +E+ + + +D SGT K + ++ N FR
Sbjct: 224 FKLQTNANLEKKERMVTDEVSSNDEQIDSSGTVFLKSREEACEKINELYGLNVKVKFRYD 283
Query: 191 AMTHGSKSHRQLGSIGAGTTPGR 213
+ + +Q+ ++ GT+ G
Sbjct: 284 IVEQMRRELQQIENVSRGTSDGE 306
>pdb|3ZF7|FF Chain f, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 429
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 153 QKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSH---RQLGSIGAGT 209
+++ + +F + + DV T G GF G +KR G K+H R++ IGA
Sbjct: 206 KEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRW----GVACLPRKTHRGLRKVACIGAW- 260
Query: 210 TPGRV 214
P RV
Sbjct: 261 HPSRV 265
>pdb|3JYW|C Chain C, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 362
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 137 HLQEFRL------QSIDG----FEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHN 186
HL E +L + +D FE + +A + +F + +++D T G GF+G
Sbjct: 173 HLAEIQLNGGSISEKVDWAREHFE--KTVAVDSVFEQNEMIDAIAVTKGHGFEGV----T 226
Query: 187 FRRGAMTHGSKSH---RQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
R G K+H R++ IGA P V G+ G +R KI ++
Sbjct: 227 HRWGTKKLPRKTHRGLRKVACIGAW-HPAHVMWSVARAGQRGYHSRTSINHKIYRV 281
>pdb|1S1I|C Chain C, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 386
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 137 HLQEFRL------QSIDG----FEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHN 186
HL E +L + +D FE + +A + +F + +++D T G GF+G
Sbjct: 176 HLAEIQLNGGSISEKVDWAREHFE--KTVAVDSVFEQNEMIDAIAVTKGHGFEGV----T 229
Query: 187 FRRGAMTHGSKSH---RQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
R G K+H R++ IGA P V G+ G +R KI ++
Sbjct: 230 HRWGTKKLPRKTHRGLRKVACIGAW-HPAHVMWSVARAGQRGYHSRTSINHKIYRV 284
>pdb|3O58|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|B Chain B, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|B Chain B, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 387
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 137 HLQEFRL------QSIDG----FEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHN 186
HL E +L + +D FE + +A + +F + +++D T G GF+G
Sbjct: 177 HLAEIQLNGGSISEKVDWAREHFE--KTVAVDSVFEQNEMIDAIAVTKGHGFEGV----T 230
Query: 187 FRRGAMTHGSKSH---RQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
R G K+H R++ IGA P V G+ G +R KI ++
Sbjct: 231 HRWGTKKLPRKTHRGLRKVACIGAW-HPAHVMWSVARAGQRGYHSRTSINHKIYRV 285
>pdb|3IZS|C Chain C, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
Length = 388
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 137 HLQEFRL------QSIDG----FEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHN 186
HL E +L + +D FE + +A + +F + +++D T G GF+G
Sbjct: 177 HLAEIQLNGGSISEKVDWAREHFE--KTVAVDSVFEQNEMIDAIAVTKGHGFEGV----T 230
Query: 187 FRRGAMTHGSKSH---RQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
R G K+H R++ IGA P V G+ G +R KI ++
Sbjct: 231 HRWGTKKLPRKTHRGLRKVACIGAW-HPAHVMWSVARAGQRGYHSRTSINHKIYRV 285
>pdb|3LV5|A Chain A, Crystal Structure Of The Mutant I199e Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
pdb|3LV5|B Chain B, Crystal Structure Of The Mutant I199e Of Orotidine
5'-Monoph Decarboxylase From Methanobacterium
Thermoautotrophicum Com With Inhibitor Bmp
Length = 228
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 250 GAVPGKPGNLLRVAPAKIVGKNI 272
GA G PG LR A A+IVG++I
Sbjct: 183 GAQGGDPGETLRFADAEIVGRSI 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,987,224
Number of Sequences: 62578
Number of extensions: 321519
Number of successful extensions: 703
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 28
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)