Query 023905
Match_columns 275
No_of_seqs 152 out of 1285
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 14:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_D 50S ribosomal protein L 100.0 1.7E-90 5.7E-95 616.7 21.0 207 59-267 1-208 (209)
2 2ftc_C L3MT, MRP-L3, mitochond 100.0 1.9E-89 6.3E-94 611.1 25.1 206 59-267 1-209 (211)
3 3v2d_E 50S ribosomal protein L 100.0 1.4E-88 4.8E-93 603.2 21.7 203 60-269 2-205 (206)
4 3bbo_F Ribosomal protein L3; l 100.0 2.8E-89 9.7E-94 625.6 5.1 223 52-275 36-259 (259)
5 2zjr_B 50S ribosomal protein L 100.0 3.7E-84 1.3E-88 577.5 20.5 202 60-268 2-204 (211)
6 1vq8_B 50S ribosomal protein L 100.0 5.5E-73 1.9E-77 534.6 18.4 211 56-269 36-319 (338)
7 2zkr_b 60S ribosomal protein L 100.0 2.6E-62 9E-67 469.0 11.0 203 57-268 41-353 (403)
8 3j21_C 50S ribosomal protein L 100.0 1.8E-51 6.3E-56 389.3 17.2 211 56-269 35-345 (365)
9 3u5e_B 60S ribosomal protein L 100.0 1.9E-50 6.5E-55 384.6 18.3 208 57-268 41-344 (387)
10 3iz5_C 60S ribosomal protein L 100.0 3.6E-50 1.2E-54 383.0 14.9 208 57-268 41-348 (389)
11 4a17_B RPL3, ribosomal protein 100.0 6.7E-49 2.3E-53 374.4 20.7 208 57-268 41-342 (391)
12 3e8v_A Possible transglutamina 26.9 52 0.0018 25.0 3.3 46 70-115 5-54 (82)
13 3cgm_A SLYD, peptidyl-prolyl C 23.1 63 0.0022 26.5 3.5 32 64-95 84-116 (158)
14 4dt4_A FKBP-type 16 kDa peptid 23.0 79 0.0027 26.5 4.1 31 65-95 113-144 (169)
No 1
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Probab=100.00 E-value=1.7e-90 Score=616.66 Aligned_cols=207 Identities=46% Similarity=0.761 Sum_probs=202.6
Q ss_pred eeeeeEEEeeeeeEECCCCcEEEEEEEEeCCCeEEEEeeccCCCCeeEEEEeeeeeccccCChhhcchhhhcCCCCCceE
Q 023905 59 GIGVMGTKLGMMSYFEPDGTVVPVTVVGFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHL 138 (275)
Q Consensus 59 r~Glig~KiGMt~if~~~G~~vpvTVl~~~~~~vV~~vkt~e~dGY~AvqvG~g~~~~k~~~Kp~~G~f~kagv~pkr~l 138 (275)
++||||+|+||||+|||||+++||||||++ +|+|+|+||.|+|||+||||||++++++++|||++|||+|||++|+|+|
T Consensus 1 m~Glig~KiGMt~if~~~G~~ipvTVl~~~-~~~V~q~kt~e~dGY~Avqvg~g~~~~~~~~Kp~~Ghf~kagv~pkr~l 79 (209)
T 3r8s_D 1 MIGLVGKKVGMTRIFTEDGVSIPVTVIEVE-ANRVTQVKDLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGL 79 (209)
T ss_dssp CCCEEEEEEEEEEEECTTCCEEEEEEEECC-CEEEEEEECHHHHSSCEEEEEESCCCGGGSCHHHHHHHHHHTCCCCSEE
T ss_pred CcEEEEEEeceeEEECCCCcEEEEEEEEec-CCEEEEEEccCCCCeEEEEEEEeecCcccCCHHHhhHHHHcCCCCCeEE
Confidence 369999999999999999999999999996 6999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcCCCcEEeccccccCCCEEEEEEEeeccceeeeeeeeccCCCCCCCC-CCCCCCCCCCCCCCCCCcccCC
Q 023905 139 QEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKG 217 (275)
Q Consensus 139 ~Efrv~~~~~~~~G~~l~~~~~F~~Gq~VDV~g~SKGKGF~GvmKR~gF~g~pasHG-Sk~HR~~GSiG~~~~PgRV~kG 217 (275)
+|||++++++|++|++|++ |+|++||+|||+|+|||||||||||||||+++|+||| |++||++||||++|+|+|||||
T Consensus 80 ~Efrv~~~~~~~~G~~i~v-~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~~~p~sHG~s~~hR~~GsiG~~~~P~rV~kg 158 (209)
T 3r8s_D 80 WEFRLAEGEEFTVGQSISV-ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKG 158 (209)
T ss_dssp EEEECCTTCCCCTTCEECG-GGGGSCCEEEEEEECCCCCEECHHHHHCCCCCCSSTTCCSCSSSCCCCCCBTTBCSCCTT
T ss_pred EEEecCCcccCCCCCEEEe-eeEcCCCEEEEEEEEeccccceeeeEcCCCCCCcccCCCCCCCCCeeCCCCCCCCcCcCC
Confidence 9999988888999999998 8999999999999999999999999999999999999 8999999999999999999999
Q ss_pred CCCCCCCCCeeEEEEceEEEEEeCCCCEEEEeccCCCCCCCeEEEEecee
Q 023905 218 KKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKI 267 (275)
Q Consensus 218 kkMaG~mG~~~~Tv~Nl~V~kId~e~nli~VKGsVPG~k~~~V~I~~a~~ 267 (275)
+|||||||++++|++||+|++||.|+|||||||||||+++++|+|++|++
T Consensus 159 kkmaG~mG~~~~T~~Nl~I~kid~e~nlilvKGsVPG~k~~~v~ir~avk 208 (209)
T 3r8s_D 159 KKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAVK 208 (209)
T ss_dssp CCCSEECSSSEEEEEEEEEEEEEGGGTEEEEESCCSSCTTCEEEEEECSC
T ss_pred CccCCCCCCccEEEecCEEEEEcCCCCEEEEEecCcCCCCCEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999976
No 2
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=1.9e-89 Score=611.12 Aligned_cols=206 Identities=32% Similarity=0.567 Sum_probs=201.5
Q ss_pred eeeeeEEEeeeeeEECCCCcEEEEEEEEeCCCeEEEEeeccC--CCCeeEEEEeeeeeccccCChhhcchhhhcCCCCCc
Q 023905 59 GIGVMGTKLGMMSYFEPDGTVVPVTVVGFREGNIVTQVKTEA--TDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMR 136 (275)
Q Consensus 59 r~Glig~KiGMt~if~~~G~~vpvTVl~~~~~~vV~~vkt~e--~dGY~AvqvG~g~~~~k~~~Kp~~G~f~kagv~pkr 136 (275)
|+||||+|+||||+|||||+++||||||++ +|+|+|+||.| +|||+||||||+++++++++||++|||+|||++|++
T Consensus 1 R~Gllg~KiGMt~if~~~G~~ipvTVl~~~-~~~V~q~kt~e~~~dGY~Avqvg~~~~~~~~~~kp~~Ghf~kagv~pkr 79 (211)
T 2ftc_C 1 RVGLIALKLGMMPLWTKDGQKHVVTLLQVQ-DCHVLKYTSKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQ 79 (211)
T ss_pred CceEEEEEcceEEEECCCCcEEEEEEEEEc-CCEEEEEEccccCCCCEEEEEEeeeecccccCChhHhhhHHHcCCCccc
Confidence 689999999999999999999999999996 69999999999 799999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCcCCCcEEeccccccCCCEEEEEEEeeccceeeeeeeeccCCCCCCCC-CCCCCCCCCCCCCCCCCccc
Q 023905 137 HLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVY 215 (275)
Q Consensus 137 ~l~Efrv~~~~~~~~G~~l~~~~~F~~Gq~VDV~g~SKGKGF~GvmKR~gF~g~pasHG-Sk~HR~~GSiG~~~~PgRV~ 215 (275)
+|+|||+++++.+++|++|++ |+|++||+|||+|+|||||||||||||||+++|+||| |++||++||||++ +|+|||
T Consensus 80 ~l~Efrv~~~~~~~~G~~l~v-~~F~~Gq~VDV~g~sKGKGFqGv~KR~gf~~~p~sHG~s~~hR~~GSiG~~-~PgRV~ 157 (211)
T 2ftc_C 80 TVKIFNITDNAAIKPGTPLYA-AHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATG-DIGRVW 157 (211)
T ss_pred EEEEEEeCCCCccccCCEEEh-HhccCCceEEEEEEEcCCcceeceeecCCCCCCcccCCCCCCCCCcccCCC-CCCeec
Confidence 999999988888999999998 7999999999999999999999999999999999999 9999999999998 999999
Q ss_pred CCCCCCCCCCCeeEEEEceEEEEEeCCCCEEEEeccCCCCCCCeEEEEecee
Q 023905 216 KGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKI 267 (275)
Q Consensus 216 kGkkMaG~mG~~~~Tv~Nl~V~kId~e~nli~VKGsVPG~k~~~V~I~~a~~ 267 (275)
||+|||||||++++|++||+|++||+|+|||||||||||+++++|.|++|++
T Consensus 158 kgkkmaG~mG~~~~T~~Nl~I~~id~e~nlilvKGsVPG~k~~~v~ir~a~~ 209 (211)
T 2ftc_C 158 PGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVKDSKL 209 (211)
T ss_pred CCcccCCCCCCeeEEEeccEEEEECCCCCEEEEEecCcCCCCCEEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999976
No 3
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Probab=100.00 E-value=1.4e-88 Score=603.20 Aligned_cols=203 Identities=42% Similarity=0.704 Sum_probs=197.7
Q ss_pred eeeeEEEeeeeeEECCCCcEEEEEEEEeCCCeEEEEeeccCCCCeeEEEEeeeeeccccCChhhcchhhhcCCCCCceEE
Q 023905 60 IGVMGTKLGMMSYFEPDGTVVPVTVVGFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQ 139 (275)
Q Consensus 60 ~Glig~KiGMt~if~~~G~~vpvTVl~~~~~~vV~~vkt~e~dGY~AvqvG~g~~~~k~~~Kp~~G~f~kagv~pkr~l~ 139 (275)
.||||+|+||||+||| |+++||||||++ +|+|+|+||.|+|||+||||||++++++++|||++|||+|||++|+|+|+
T Consensus 2 ~Gllg~KiGMt~if~~-G~~ipvTVi~~~-~~~V~q~kt~e~dGY~Avqvg~~~~~~~~~~kp~~Ghf~kagv~pkr~l~ 79 (206)
T 3v2d_E 2 KGILGVKVGMTRIFRD-DRAVPVTVILAG-PCPVVQRRTPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILR 79 (206)
T ss_dssp CEEEEEEEEEEEEESS-SCEEEEEEEECC-CEEEEEEECHHHHSSCEEEEEEEECCGGGCCHHHHHHHHTTCCCCEEEEE
T ss_pred ceEEEEEccceeEEcC-CCEEEEEEEEec-CCEEEEEEccCcCCeEEEEEEeccCCccCCCHHHhhhHHHcCCCcCeEEE
Confidence 6999999999999999 999999999996 69999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCcCCCcEEeccccccCCCEEEEEEEeeccceeeeeeeeccCCCCCCCC-CCCCCCCCCCCCCCCCCcccCCC
Q 023905 140 EFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGK 218 (275)
Q Consensus 140 Efrv~~~~~~~~G~~l~~~~~F~~Gq~VDV~g~SKGKGF~GvmKR~gF~g~pasHG-Sk~HR~~GSiG~~~~PgRV~kGk 218 (275)
|||+++ ++|++|++ |+|++||+|||+|+|||||||||||||||+++|+||| |++||++||||++|+|+|||||+
T Consensus 80 Efrv~~----~~G~~i~v-~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~~~p~tHG~s~~hR~~GsiG~~~~P~rV~kgk 154 (206)
T 3v2d_E 80 EIRDFN----PEGDTVTV-EIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGK 154 (206)
T ss_dssp EEETCC----CSSSEECG-GGCCTTCEEEEEEECCCCCEECHHHHSCCCCCCSSTTCCSCTTCCCCCCCBTTBCSCCTTC
T ss_pred EEECCC----CCCCEEEe-eeecCCCEEEEEEEEeccccceeeeEcccCCCCcccCCCCCCCCCeeCCCCCCCCcCcCCC
Confidence 999864 89999998 8999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCeeEEEEceEEEEEeCCCCEEEEeccCCCCCCCeEEEEeceecC
Q 023905 219 KMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVG 269 (275)
Q Consensus 219 kMaG~mG~~~~Tv~Nl~V~kId~e~nli~VKGsVPG~k~~~V~I~~a~~~~ 269 (275)
+||||||++++|++||+|++||.|+|||||||||||+++++|+|++|++..
T Consensus 155 kmaG~mG~~~~T~~Nl~I~kid~e~nlilvKGsVPG~k~~~v~ir~a~k~~ 205 (206)
T 3v2d_E 155 KMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGPNGGLVIVRETKKAA 205 (206)
T ss_dssp CCCEECSSSEEEEEEEEEEEEETTTTEEEEESCCSSCTTCEEEEEECCCC-
T ss_pred ccCCCCCCccEEEeccEEEEEcCCCCEEEEEecCcCCCCCEEEEeeccccC
Confidence 999999999999999999999999999999999999999999999998754
No 4
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.8e-89 Score=625.61 Aligned_cols=223 Identities=84% Similarity=1.325 Sum_probs=150.6
Q ss_pred ccccccceeeeeEEEeeeeeEECCCCcEEEEEEEEeCCCeEE-EEeeccCCCCeeEEEEeeeeeccccCChhhcchhhhc
Q 023905 52 VSMSYEAGIGVMGTKLGMMSYFEPDGTVVPVTVVGFREGNIV-TQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKS 130 (275)
Q Consensus 52 ~~~~~~~r~Glig~KiGMt~if~~~G~~vpvTVl~~~~~~vV-~~vkt~e~dGY~AvqvG~g~~~~k~~~Kp~~G~f~ka 130 (275)
+|||+++|+|+||+|+||||+||+||.++||||||+++ |+| +|++|.|.|||+|+|+||++.++++++||++|||+|+
T Consensus 36 ~~~~~~~~~G~lG~K~GMT~if~e~G~~vPVTVle~~p-~~Vv~q~kt~e~dGy~Avqvg~~~~k~k~~tKp~~Ghf~ka 114 (259)
T 3bbo_F 36 ISASLEAGVGVMATKLGMMSFFEESGTVVPVTVVGFRE-GNIVTQIKTEATDGYNAVQVGYRRVRDRKLTKPEMGHLEKS 114 (259)
T ss_dssp ----------------------------------------------------------------CCSSCCHHHHTTCSSC
T ss_pred ccccccceeEEEEEecCcEEEEccCCeEEEEEEEEECC-CEEEEEEeecCCCCcEEEEEEEeeechhhCChhhhhhHHHc
Confidence 68999999999999999999999999999999999975 666 8999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEecCCCCcCCCcEEeccccccCCCEEEEEEEeeccceeeeeeeeccCCCCCCCCCCCCCCCCCCCCCCC
Q 023905 131 GLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTT 210 (275)
Q Consensus 131 gv~pkr~l~Efrv~~~~~~~~G~~l~~~~~F~~Gq~VDV~g~SKGKGF~GvmKR~gF~g~pasHGSk~HR~~GSiG~~~~ 210 (275)
+++|+++|+|||+++.++|++|++|+++++|++||+|||+|+|||||||||||||||+++|+||||++||++||||++++
T Consensus 115 gv~~kr~l~Efrv~~~~~~~~G~~i~v~~vF~~Gq~VDV~G~TKGKGFqGv~KRwgf~g~p~sHGsk~hR~~GSiG~~~~ 194 (259)
T 3bbo_F 115 GIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRQLGSIGAGTT 194 (259)
T ss_dssp CCCCSSCCCCCCSCCCCTTTTCCCCSSCSSSCSSSCCCCCCBCCCCSSCCSSSSSCCCCCCSSSCSSTTTSCCCCSCSSC
T ss_pred CCCCCcEEEEEecCChhhcccccEeehhheecCCCEEEEEEEecCCcceeeeeecCcCCCCCcCCCCCCCCCcccCCCCC
Confidence 99999999999998777899999999954599999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCeeEEEEceEEEEEeCCCCEEEEeccCCCCCCCeEEEEeceecCCCCCCC
Q 023905 211 PGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPKN 275 (275)
Q Consensus 211 PgRV~kGkkMaG~mG~~~~Tv~Nl~V~kId~e~nli~VKGsVPG~k~~~V~I~~a~~~~~~~p~~ 275 (275)
|+|||||+|||||||++++|++||+|++||+|+|||||||||||+++++|+|++|++.++++|||
T Consensus 195 PgRV~kGkkMaGqmG~~~~T~~Nl~IvrId~e~nlilVKGsVPG~k~~~V~ir~avk~~~~~~~~ 259 (259)
T 3bbo_F 195 PGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDQLNIIMIKGALPGKPGNLLRIAPAKIVGKNIPKS 259 (259)
T ss_dssp CTTTTTTSCCCCCCCCCBCCCCCCCEEEEETTTTEEEECSCCSSCSSSCCCCCCCCCC-------
T ss_pred CCcCcCCCccCCCCCCceEEEeccEEEEECCCCCEEEEEecCcCCCCCEEEEEeccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999997
No 5
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ...
Probab=100.00 E-value=3.7e-84 Score=577.49 Aligned_cols=202 Identities=44% Similarity=0.740 Sum_probs=196.9
Q ss_pred eeeeEEEeeeeeEECCCCcEEEEEEEEeCCCeEEEEeeccCCCCeeEEEEeeeeeccccCChhhcchhhhcCCCCCceEE
Q 023905 60 IGVMGTKLGMMSYFEPDGTVVPVTVVGFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQ 139 (275)
Q Consensus 60 ~Glig~KiGMt~if~~~G~~vpvTVl~~~~~~vV~~vkt~e~dGY~AvqvG~g~~~~k~~~Kp~~G~f~kagv~pkr~l~ 139 (275)
+|+||+|+||||+||| |.++||||||++ ||+|+|++|.|+|||+|+||||++.+++++|||++|||+|++++|+++|+
T Consensus 2 ~g~lg~K~GMT~i~~~-g~~~pVTVie~~-p~~V~~~kt~~~dgy~avqvg~~~~~~~~~tkp~~g~~~kagv~~k~~l~ 79 (211)
T 2zjr_B 2 KGILGTKIGMTQIWKN-DRAIPVTVVLAG-PCPIVQRKTAQTDGYEAVQIGYAPKAERKVNKPMQGHFAKAGVAPTRILR 79 (211)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEEEECC-CEEEEEEECTTTTSSCEEEEECSCCCGGGCCHHHHHHHHTTTCCCCSCEE
T ss_pred eeEeEEecCcEeEEeC-CCEEEEEEEEeC-CcEEEEEeceecCCCcEEEEEEEEecccccChhhhhhHHHcCCCCCcEEE
Confidence 5999999999999999 999999999996 69999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCcCCCcEEeccccccCCCEEEEEEEeeccceeeeeeeeccCCCCCCCC-CCCCCCCCCCCCCCCCCcccCCC
Q 023905 140 EFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGK 218 (275)
Q Consensus 140 Efrv~~~~~~~~G~~l~~~~~F~~Gq~VDV~g~SKGKGF~GvmKR~gF~g~pasHG-Sk~HR~~GSiG~~~~PgRV~kGk 218 (275)
|||+++ ++|++|++ |+|++||+|||+|+|||||||||||||||+++|+||| |++||++||||++|+|+|||||+
T Consensus 80 Efrv~~----~~G~~i~v-~~F~~G~~VDV~g~tKGKGFqGv~KR~gf~~~p~sHG~s~~hR~~GsiG~~~~PgRV~kgk 154 (211)
T 2zjr_B 80 EFRGFA----PDGDSVNV-DIFAEGEKIDATGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGK 154 (211)
T ss_dssp EETTCC----CSSEECST-TTSCTTCEEEEEEECCEEEEECHHHHHCCCCCCSSSSCSSCSCSCCCCCCSSTTCSCCTTC
T ss_pred EEEcCC----cCCCEeEh-hhhcCCCceEEEEEEcCCcceeceeecCCCCCCcccCCCCCCCCCcccCCCCCCCcCcCCC
Confidence 999854 89999998 8999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCCCeeEEEEceEEEEEeCCCCEEEEeccCCCCCCCeEEEEeceec
Q 023905 219 KMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIV 268 (275)
Q Consensus 219 kMaG~mG~~~~Tv~Nl~V~kId~e~nli~VKGsVPG~k~~~V~I~~a~~~ 268 (275)
|||||||++++|++||+|++||+|+|||||||||||+++++|+|++|++.
T Consensus 155 kmaG~mG~~~~T~~Nl~I~~id~e~nlilvKGsVPG~~~~~v~ir~a~k~ 204 (211)
T 2zjr_B 155 RMAGHMGMERVTVQNLEVVEIRAGENLILVKGAIPGANGGLVVLRSAAKA 204 (211)
T ss_dssp CCCEEEECCEEEEEEEEEEEEETTTTEEEEESCCSSCTTCEEEEEBCSSC
T ss_pred ccCCCCCCccEeEeccEEEEEcCCCCEEEEEecCcCCCCcEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999873
No 6
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ...
Probab=100.00 E-value=5.5e-73 Score=534.58 Aligned_cols=211 Identities=26% Similarity=0.359 Sum_probs=194.9
Q ss_pred ccceeeeeEEEeeeeeEECCCCc----------EEEEEEEEeCCCeEEEEeeccCCCCeeEEEEeee-------eecccc
Q 023905 56 YEAGIGVMGTKLGMMSYFEPDGT----------VVPVTVVGFREGNIVTQVKTEATDGYDAVQIGYR-------RVRDKK 118 (275)
Q Consensus 56 ~~~r~Glig~KiGMt~if~~~G~----------~vpvTVl~~~~~~vV~~vkt~e~dGY~AvqvG~g-------~~~~k~ 118 (275)
-+.++|+||+|+||||||+++|+ ++||||||++ ||+|+|++|.|+|||. +|+|++ +..+++
T Consensus 36 ~~~l~g~lG~K~GMT~i~~~~g~~~s~~~gke~~vpVTVie~~-p~~V~~vk~~~~dgy~-lq~~~~v~a~~~~~~~~r~ 113 (338)
T 1vq8_B 36 QPGVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETP-PMRAVALRAYEDTPYG-QRPLTEVWTDEFHSELDRT 113 (338)
T ss_dssp SCEECCEEEEEEEEEEEEEECCCTTCTTTTSEEEEEEEEEECC-CEEEEEEEEEEEETTE-EEEEEEEECSCCCTTGGGT
T ss_pred CceEEEEEEEecCCEEEEeECCccCCccCCceeEEEEEEEEeC-CcEEEEEEeeeccCce-eEeeeeEeccccchhhccc
Confidence 45788999999999999999997 9999999996 6999999999999999 999998 445688
Q ss_pred CChhhc-------chhh--------------------h-cCCCC-CceEEEEEecCCC-----Cc-----CCCcEEeccc
Q 023905 119 LTKPEL-------GHLQ--------------------K-SGLIP-MRHLQEFRLQSID-----GF-----EAGQKLAFEE 159 (275)
Q Consensus 119 ~~Kp~~-------G~f~--------------------k-agv~p-kr~l~Efrv~~~~-----~~-----~~G~~l~~~~ 159 (275)
++||+. |||+ + +|+++ +++|+||||++.+ +| ++|++|+++|
T Consensus 114 ~~kp~~~~~~~~~~~~~~~~~~~~~~~ir~i~~tqp~k~agv~~kk~~l~E~rv~~~~~~~k~~~a~~~l~~G~~i~v~~ 193 (338)
T 1vq8_B 114 LDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMND 193 (338)
T ss_dssp SCCCSSCCHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCTTSCCCSCCEEEEEEECSCHHHHHHHHHHHHHHTCEECSTT
T ss_pred ccccccccchhhHHHHHhhhcccceeEEEEEEEeccccccCCCccCCEEEEEEecCcchhhhhhhhhhccCCCcEEchhh
Confidence 899987 7886 7 79996 8999999997644 23 3499999988
Q ss_pred cccCCCEEEEEEEeeccceeeeeeeeccCCCCCCCC-CCCCCCCCCCCCCCCCCcccCCCCCCCCCCCeeEEEEceEEEE
Q 023905 160 IFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVK 238 (275)
Q Consensus 160 ~F~~Gq~VDV~g~SKGKGF~GvmKR~gF~g~pasHG-Sk~HR~~GSiG~~~~PgRV~kGkkMaG~mG~~~~Tv~Nl~V~k 238 (275)
+|++||+|||+|+|||||||||||||||+++|+||| |+.||++|||| +|+|+|||+|++||||||++++|++||+|++
T Consensus 194 vF~~Gq~VDV~gvTKGKGFqGv~KRwgf~~~p~sHG~sk~hR~~GsiG-~~~P~RV~~g~kmaGqmG~~~rT~~Nl~I~k 272 (338)
T 1vq8_B 194 IFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLG-PWNPSRVRSTVPQQGQTGYHQRTELNKRLID 272 (338)
T ss_dssp TCCTTCEEEEEEECCCCCEECHHHHHCCCCCCGGGGSSSCSSCCSCSC-CSSSSSCCTTSCCCEECSCCEEEEEEEEEEE
T ss_pred cccCCCceeeEEEEeCCCceeeeeecCCCCCCcccCCCccCCCCcccC-CCCCCeeccCCcCCCCcCCceEEEeccEEEE
Confidence 999999999999999999999999999999999999 99999999999 4999999999999999999999999999999
Q ss_pred EeCC----------------CCEEEEeccCCCCCCCeEEEEeceecC
Q 023905 239 IDND----------------LRVVMIKGAVPGKPGNLLRVAPAKIVG 269 (275)
Q Consensus 239 Id~e----------------~nli~VKGsVPG~k~~~V~I~~a~~~~ 269 (275)
||+| +|||||||||||+++++|+|++|++..
T Consensus 273 Id~e~~i~p~GGf~~YG~v~~~~ilvKGsVPG~k~~~V~ir~avk~~ 319 (338)
T 1vq8_B 273 IGEGDEPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAVRPN 319 (338)
T ss_dssp EEEESSSCCTTCBTTTBCCCEEEEEEESCCSSCTTCEEEEEECSSCS
T ss_pred cCCCCccccCCCccccccccCCEEEEEccCcCCCCcEEEEeehhccc
Confidence 9998 999999999999999999999998753
No 7
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.6e-62 Score=468.99 Aligned_cols=203 Identities=26% Similarity=0.356 Sum_probs=182.0
Q ss_pred cceeeeeEEEeeeeeEECCC----------CcEEEEEEEEeCCCeEEEEeeccCCCCeeEEEEeeee---eccccCC---
Q 023905 57 EAGIGVMGTKLGMMSYFEPD----------GTVVPVTVVGFREGNIVTQVKTEATDGYDAVQIGYRR---VRDKKLT--- 120 (275)
Q Consensus 57 ~~r~Glig~KiGMt~if~~~----------G~~vpvTVl~~~~~~vV~~vkt~e~dGY~AvqvG~g~---~~~k~~~--- 120 (275)
+.++|+||+|+|||+||+++ +.++||||||++ ||+|++++ ||.++|.|++. +-..+++
T Consensus 41 ~~ltgflGyKaGMThi~~~~drpgS~~~~kev~~pVTVlEtp-P~~Vvgvr-----GY~~~~~Gl~~~~~vwa~~ls~e~ 114 (403)
T 2zkr_b 41 VHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETP-PMVIVGIV-----GYVETPRGLRTFKTIFAEHISDEC 114 (403)
T ss_dssp BGGGSCEEEEEEEEEEEEECCCTTSTTCSCEEEEEEEEEECC-CBEEEEEE-----EEEEETTEEEEEEEEECSCCCGGG
T ss_pred ceeeEEEEEccCCeEEEeeccCCCCccCCCceEEEEEEEEcC-CCEEEEEE-----eEEEecCCcccceEEeeccCChHH
Confidence 47899999999999999998 999999999996 68888886 99999999873 3222233
Q ss_pred -------------hhhcchhhh----------------------------------cCCC-CCceEEEEEecCCC-----
Q 023905 121 -------------KPELGHLQK----------------------------------SGLI-PMRHLQEFRLQSID----- 147 (275)
Q Consensus 121 -------------Kp~~G~f~k----------------------------------agv~-pkr~l~Efrv~~~~----- 147 (275)
|+..+||++ ++++ ++++|+||+|++.+
T Consensus 115 ~Rr~~kn~~~~~kk~~~~~~kk~~~~~~~~~i~~~l~~~~k~~~~iRvi~hTq~~~~~l~qkk~~l~E~~v~g~~~~~k~ 194 (403)
T 2zkr_b 115 KRRFYKNWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEVQVNGGTVAEKL 194 (403)
T ss_dssp GCCCCCCSSCCSCCCCCCCCCCCCCHHHHHHHHHHHHHHSCCCSSCEEEEECCGGGSSCSCCCCCCEEEEBCSSSHHHHH
T ss_pred hhhhhcccccchhhhhhhcccccccchhhhhHHHHHHHhhccceEEEEEEEecccccccccCCCEEEEEEecCcchhhhh
Confidence 666777765 5787 99999999998655
Q ss_pred Cc---CCCcEEeccccccCCCEEEEEEEeeccceeeeeeeeccCCCCC-CCCCCCCCCCCCCCCCCCCCcccCCCCCCCC
Q 023905 148 GF---EAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAM-THGSKSHRQLGSIGAGTTPGRVYKGKKMPGR 223 (275)
Q Consensus 148 ~~---~~G~~l~~~~~F~~Gq~VDV~g~SKGKGF~GvmKR~gF~g~pa-sHGSk~HR~~GSiG~~~~PgRV~kGkkMaG~ 223 (275)
+| .+|++|+++++|++||+|||+|+|||||||||||||||+++|+ || +.||++|||| +|+|+|||+|++||||
T Consensus 195 ~~A~~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvkRwg~~~~p~ktH--~~hR~~GsiG-~~~P~RV~~g~~maGq 271 (403)
T 2zkr_b 195 DWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTH--RGLRKVACIG-AWHPARVAFSVARAGQ 271 (403)
T ss_dssp HHHHHHHHSCBCSTTTCCSSCCCCEEEECCEEEEECHHHHHCCCCCCSSTT--TTTTCCSCSS-CSSSCSCCTTSCCCEE
T ss_pred hhhhccCCcEEchhhhccCCceEEEEEeecCCcceeceeecCcCCCCcccc--cccCCCcccC-CCCCCeECCCCcCCCC
Confidence 46 8999999988999999999999999999999999999999997 99 5799999999 6999999999999999
Q ss_pred CCCeeEEEEceEEEEEeCC-------------------------------------CCEEEEeccCCCCCCCeEEEEece
Q 023905 224 MGGTTRKIRKLKIVKIDND-------------------------------------LRVVMIKGAVPGKPGNLLRVAPAK 266 (275)
Q Consensus 224 mG~~~~Tv~Nl~V~kId~e-------------------------------------~nli~VKGsVPG~k~~~V~I~~a~ 266 (275)
||++++|++||+|++||.| +|||||||||||+++++|.|++|+
T Consensus 272 mG~~~rT~~NlkI~rI~~~~~~~~~k~~~~~~~t~~d~~~k~ItP~GGF~hYG~V~~~~ilvKGsVpG~kk~~v~lr~a~ 351 (403)
T 2zkr_b 272 KGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSL 351 (403)
T ss_dssp EECCEEEESCCCEEEEECCCCCCSSCCCCCTTCCCCCCSSCSCCSCCCBTTTBCCCSCEEEEESCCSSCTTCEEECCCCC
T ss_pred CCcceEEecCCEEEEECCccccccccccccccccccccccccccCCCCcceeeeecCCEEEEEecccCCCCcEEEEeecc
Confidence 9999999999999999998 999999999999999999999998
Q ss_pred ec
Q 023905 267 IV 268 (275)
Q Consensus 267 ~~ 268 (275)
+.
T Consensus 352 ~~ 353 (403)
T 2zkr_b 352 LV 353 (403)
T ss_dssp --
T ss_pred cc
Confidence 74
No 8
>3j21_C 50S ribosomal protein L3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-51 Score=389.25 Aligned_cols=211 Identities=27% Similarity=0.407 Sum_probs=166.9
Q ss_pred ccceeeeeEEEeeeeeEECCCC---------cEEEEEEEEeCCCeEEEEeeccC--CCCeeEEE-Eeeeeec--------
Q 023905 56 YEAGIGVMGTKLGMMSYFEPDG---------TVVPVTVVGFREGNIVTQVKTEA--TDGYDAVQ-IGYRRVR-------- 115 (275)
Q Consensus 56 ~~~r~Glig~KiGMt~if~~~G---------~~vpvTVl~~~~~~vV~~vkt~e--~dGY~Avq-vG~g~~~-------- 115 (275)
-+...|++|+|.|||+|.-++- ...||||||.+ |.+|+.+.--. -.|..++- |=+.+.+
T Consensus 35 ~~~L~~F~GYKAGMTHiv~~~drpgS~~~kEv~~~VTivEtP-Pm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~~~~~~~y 113 (365)
T 3j21_C 35 EVRMLGFAGYKAGMTHILMIDDEPGLTNGKEIFMPVTIIETP-PLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKE 113 (365)
T ss_dssp SSEECCEEEEEEEEEEEEEESCSCSSCSSSEEEEEEEEEECC-CEEEEEEEEEEECSSSEEEEEEECCCCCCCCSCCCCC
T ss_pred CceeeeeeeeccCCeEEEEEcCCCCCcCCCEeeeeeEEEeCC-CeEEEEEEEEeecCCCceeEEEEccccccchhhcccc
Confidence 4578899999999999986542 38899999995 68888764222 23332221 1111111
Q ss_pred ---------------cccC---Ch-----------hhcchhhh-----------------cCCCCCceEEEEEecCCC--
Q 023905 116 ---------------DKKL---TK-----------PELGHLQK-----------------SGLIPMRHLQEFRLQSID-- 147 (275)
Q Consensus 116 ---------------~k~~---~K-----------p~~G~f~k-----------------agv~pkr~l~Efrv~~~~-- 147 (275)
.+++ .| ..+..+++ .++..|.+|+|++|...+
T Consensus 114 ~~~~~k~~~~~~~e~~Rr~~~~~k~~~~~~~~~~~~~~~~~~k~~~~~~iRvi~hTqp~~~~lqKK~~imEiqV~Ggsv~ 193 (365)
T 3j21_C 114 RKGKPKPKMTFYKLLERRIATLPKNYTQEMFEQKLGQLEDMIKEGEIVDVRAIVATQPWVIKLKKKPEVMEYAIGGTSVE 193 (365)
T ss_dssp SSSCCCCCCCSCSHHHHSSCCCCSCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEECCSSCSSCCSCCEEEEEEECSSHH
T ss_pred ccccccccccchhhhhhhhhcccccccccchhhHHHHHHHhhccCcceEEEEEEeccccccccccCccEEEEEecCCCHH
Confidence 0111 11 11222233 345567899999997644
Q ss_pred ---Cc---CCCcEEeccccccCCCEEEEEEEeeccceeeeeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 023905 148 ---GF---EAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMP 221 (275)
Q Consensus 148 ---~~---~~G~~l~~~~~F~~Gq~VDV~g~SKGKGF~GvmKR~gF~g~pasHGSk~HR~~GSiG~~~~PgRV~kGkkMa 221 (275)
+| ++|++|+++++|++||+|||+|+|||||||||||||||+++|++||+. ||++||||+ |+|+|||+|++||
T Consensus 194 ~k~~~a~~~lG~~i~v~~vF~~ge~VDV~GvTKGKGFqGvvKRwgf~~~p~~hg~~-hR~~GsiG~-~~P~rV~~g~~ma 271 (365)
T 3j21_C 194 EKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKG-RRKVGSIGP-WHPARVMWTVPMA 271 (365)
T ss_dssp HHHHHHHHHTTCBCCHHHHCCTTCEEEEEEECCCCEEECHHHHHCCCCCSSCCSSC-SSCCCCSCC-SSSCSCCSSSCCC
T ss_pred HHHHHHHhhcCcEEechhccCCCCEEEEEEEeeccccccceeeccCCCCCCCCCCC-CCCCcccCC-CCCCcccCCCccC
Confidence 22 689999998899999999999999999999999999999999999963 999999999 7999999999999
Q ss_pred CCCCCeeEEEEceEEEEEeCC--------------------------CCEEEEeccCCCCCCCeEEEEeceecC
Q 023905 222 GRMGGTTRKIRKLKIVKIDND--------------------------LRVVMIKGAVPGKPGNLLRVAPAKIVG 269 (275)
Q Consensus 222 G~mG~~~~Tv~Nl~V~kId~e--------------------------~nli~VKGsVPG~k~~~V~I~~a~~~~ 269 (275)
||||++++|++||+|++||+| +|||||||||||+++++|+|++|++..
T Consensus 272 GqmG~~~rT~~NlkI~kI~~~~~~~~~d~t~k~ItP~GGF~hYG~V~~~~ilvKGsVPG~kk~~v~lr~a~~~~ 345 (365)
T 3j21_C 272 GQMGFHHRTELNKRLIAIGENGKLKLDENTEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPP 345 (365)
T ss_dssp EEESSCEEEEEEEEEEEEEEESSCCSSSSSCSCCCCTTCBTTBCCCCEEEEEEESCCSSCTTCEEEEEECSSCC
T ss_pred CccCcceeEecCCEEEEEcCCCCcccccccccccccCCCceeeeeecCCEEEEEecCcCCCCcEEEEeeccccc
Confidence 999999999999999999986 799999999999999999999998753
No 9
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 4b6a_B 3izc_C 3izs_C 1s1i_C 3jyw_C
Probab=100.00 E-value=1.9e-50 Score=384.64 Aligned_cols=208 Identities=24% Similarity=0.359 Sum_probs=163.0
Q ss_pred cceeeeeEEEeeeeeEECCC---C-------cEEEEEEEEeCCCeEEEEeeccCCC--CeeEEE-Eeeeeecc---ccC-
Q 023905 57 EAGIGVMGTKLGMMSYFEPD---G-------TVVPVTVVGFREGNIVTQVKTEATD--GYDAVQ-IGYRRVRD---KKL- 119 (275)
Q Consensus 57 ~~r~Glig~KiGMt~if~~~---G-------~~vpvTVl~~~~~~vV~~vkt~e~d--GY~Avq-vG~g~~~~---k~~- 119 (275)
+..+|++|+|.|||+|.-++ | ...||||||.+ |.+|+.+.--..+ |-.++- |=+.+.++ +++
T Consensus 41 ~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEvv~~VTivEtP-Pm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~ 119 (387)
T 3u5e_B 41 VALTSFLGYKAGMTTIVRDLDRPGSKFHKREVVEAVTVVDTP-PVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFY 119 (387)
T ss_dssp CCCSEEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEECC-CEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGC
T ss_pred ceeeeeeeeccCCeEEEEEccCCCCCcCCCEeeeeeEEEecC-CeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhh
Confidence 45789999999999998442 4 38999999995 6888876422112 222211 11111110 111
Q ss_pred --------------C-------hhhcchh---h---------------hcCCC-CCceEEEEEecCCC-----Cc---CC
Q 023905 120 --------------T-------KPELGHL---Q---------------KSGLI-PMRHLQEFRLQSID-----GF---EA 151 (275)
Q Consensus 120 --------------~-------Kp~~G~f---~---------------kagv~-pkr~l~Efrv~~~~-----~~---~~ 151 (275)
. +...-.| + ..++. -|.+|+|++|+..+ +| .+
T Consensus 120 knw~~skkkaftk~~kk~~~~~~~~~~~~~~~~k~~~viRvi~hTqp~l~~l~qKK~~imEiqV~Ggsv~~k~~~a~~~l 199 (387)
T 3u5e_B 120 KNWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHF 199 (387)
T ss_dssp SCTTTSCCCTTTTTGGGGSSSSHHHHHHHHHHHHSCSEEEEEEECCGGGSSCSCCSCCEEEEECCSSCHHHHHHHHHHTT
T ss_pred cccchhhhhhhhhhcccccchhHHHHHHHHHhhhcccEEEEEEeccccccCccccCceeEEEEecCCCHHHHHHHHHhcc
Confidence 0 1111111 1 23343 36899999998643 22 68
Q ss_pred CcEEeccccccCCCEEEEEEEeeccceeeeeeeeccCCCC-CCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCeeEE
Q 023905 152 GQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGA-MTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRK 230 (275)
Q Consensus 152 G~~l~~~~~F~~Gq~VDV~g~SKGKGF~GvmKR~gF~g~p-asHGSk~HR~~GSiG~~~~PgRV~kGkkMaG~mG~~~~T 230 (275)
|++|+++++|++||+|||+|+|||||||||||||||+++| +||+ .||++||||+ |+|+|||+|++||||||++++|
T Consensus 200 g~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~~p~ktH~--~~R~~GsiG~-~~P~rV~~g~~maGqmG~~~rT 276 (387)
T 3u5e_B 200 EKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPRKTHR--GLRKVACIGA-WHPAHVMWSVARAGQRGYHSRT 276 (387)
T ss_dssp TCEECGGGTCCTTCEEEEEEECCCCCEECHHHHHCCCCCCTTCTT--CSSSCSCCCC-SSSSSCCTTSCCCEECSCCEEE
T ss_pred CCEechHHhccCCCEEEEEEEEcCccceeeeeecccCCCCccccC--CCCCCcccCC-CCCCcccCCCccCCCCCCceEE
Confidence 9999998899999999999999999999999999999999 9997 6999999999 9999999999999999999999
Q ss_pred EEceEEEEEeC------------------------------CCCEEEEeccCCCCCCCeEEEEeceec
Q 023905 231 IRKLKIVKIDN------------------------------DLRVVMIKGAVPGKPGNLLRVAPAKIV 268 (275)
Q Consensus 231 v~Nl~V~kId~------------------------------e~nli~VKGsVPG~k~~~V~I~~a~~~ 268 (275)
++||+|++||. ++|||||||||||+++++|.|++|++.
T Consensus 277 ~~NlkI~kI~~~~~~~~~~t~~d~t~k~ItP~GGF~hYG~V~~~~ilvKGsVpG~kk~~v~lr~s~~~ 344 (387)
T 3u5e_B 277 SINHKIYRVGKGDDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYT 344 (387)
T ss_dssp EEEEEEEEECCSSCSCSSCCTTTCCCCCSCCTTCBTTTBCCCSCEEEEESCCSSCTTCEEEEEECSSC
T ss_pred EeccEEEEEcCCccccccccccccccccccCCCCccccceecCCEEEEEecccCCCCcEEEEeecccC
Confidence 99999999999 999999999999999999999999874
No 10
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_C
Probab=100.00 E-value=3.6e-50 Score=382.98 Aligned_cols=208 Identities=23% Similarity=0.352 Sum_probs=163.7
Q ss_pred cceeeeeEEEeeeeeEECCC---C-------cEEEEEEEEeCCCeEEEEeeccCC--CCeeEEE-Eeeeeecc---ccC-
Q 023905 57 EAGIGVMGTKLGMMSYFEPD---G-------TVVPVTVVGFREGNIVTQVKTEAT--DGYDAVQ-IGYRRVRD---KKL- 119 (275)
Q Consensus 57 ~~r~Glig~KiGMt~if~~~---G-------~~vpvTVl~~~~~~vV~~vkt~e~--dGY~Avq-vG~g~~~~---k~~- 119 (275)
+..+|++|+|.|||+|.-++ | ...||||||.+ |.+|+.+.--.. .|-.++- |=+.+.++ +++
T Consensus 41 ~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEv~~~VTivEtP-Pm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~ 119 (389)
T 3iz5_C 41 CHLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETP-PLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFY 119 (389)
T ss_dssp TCBSEEEEEEEEEEEEEECCCCCSSSSCSSCEEEEEEEEECC-CEEEEEEEEEECCTTCCEEEEEEECSCCSSHHHHTTT
T ss_pred ceeeeeeeeccCCeEEEEEccCCCCCcCCcEeeeeeEEEeCC-CeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhh
Confidence 46789999999999998543 3 38999999995 688887642222 2332221 11111111 111
Q ss_pred --------------Ch---------h---hcchhh---------------hc-CCCC-CceEEEEEecCCC-----Cc--
Q 023905 120 --------------TK---------P---ELGHLQ---------------KS-GLIP-MRHLQEFRLQSID-----GF-- 149 (275)
Q Consensus 120 --------------~K---------p---~~G~f~---------------ka-gv~p-kr~l~Efrv~~~~-----~~-- 149 (275)
.| . .+..++ .. ++.- |.+|+|++|+..+ +|
T Consensus 120 knw~~skkkaftk~~kk~~~~~g~~~~~~~~~~~~k~~~viRvi~hTqp~l~~~l~qKK~~imEiqVnGgsv~~k~d~a~ 199 (389)
T 3iz5_C 120 KNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIVRVIAHTQIRKMKGLKQKKAHLMEIQVNGGTIADKVDYGY 199 (389)
T ss_dssp TTTCSCCCSSCSCCCCCCSHHHHHHHHHHHHHHHHHHTCEEEEEEEECGGGCSSSCCCCCEEEEEEBCCSCHHHHHHHHH
T ss_pred cchhhhhhhhhhhhccccccchhhhHHHHHHHHhhhcccEEEEEEecccccccCCccCCceEEEEEecCCCHHHHHHHHH
Confidence 00 0 111111 11 4433 6899999997643 12
Q ss_pred -CCCcEEeccccccCCCEEEEEEEeeccceeeeeeeeccCCCC-CCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCe
Q 023905 150 -EAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGA-MTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGT 227 (275)
Q Consensus 150 -~~G~~l~~~~~F~~Gq~VDV~g~SKGKGF~GvmKR~gF~g~p-asHGSk~HR~~GSiG~~~~PgRV~kGkkMaG~mG~~ 227 (275)
.+|++|+++++|++||+|||+|+|||||||||||||||+++| +||+ .||++||||+ |+|+|||+|++||||||++
T Consensus 200 ~~lg~~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~~p~ktH~--~~R~~GsiG~-~~P~rV~~g~~maGqmG~~ 276 (389)
T 3iz5_C 200 KFFEKEVPVEAVFQKDEMVDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGA-WHPARVSYTVARAGQNGYH 276 (389)
T ss_dssp HHHTSCBCGGGTCCTTCEEEEEEECCEEEEECHHHHHCCCCCCSSCCS--CSSCCSCSSC-SSSSSCCTTSCCCEEEECC
T ss_pred hcCCCEEehhhccCCCCEEEEEEEecCcccccceeecccCCCCccccC--CCCCCcccCC-CCCCcccCCCccCCCCCCc
Confidence 579999998899999999999999999999999999999999 9997 6999999999 9999999999999999999
Q ss_pred eEEEEceEEEEEeC-------------------------------CCCEEEEeccCCCCCCCeEEEEeceec
Q 023905 228 TRKIRKLKIVKIDN-------------------------------DLRVVMIKGAVPGKPGNLLRVAPAKIV 268 (275)
Q Consensus 228 ~~Tv~Nl~V~kId~-------------------------------e~nli~VKGsVPG~k~~~V~I~~a~~~ 268 (275)
++|++||+|++||. ++|||||||||||+++++|.|++|++.
T Consensus 277 ~rT~~N~kI~kI~~~g~~~~~a~t~~d~t~k~ItP~GGF~hYG~V~~~~ilvKGsVpG~kk~~v~lr~s~~~ 348 (389)
T 3iz5_C 277 HRTEMNKKIYKMGKSGQESHEACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLK 348 (389)
T ss_dssp EEEEEEEECCEEEESSSSCCCSCSSSSCCCCCSSCTTCBTTTBCCCSEEEEEESCCSSSSSCEEEEEECSCC
T ss_pred ceeeeeeEEEEeCCccccccccccccccccccccCCCCccccceecCCEEEEeccccCCCCcEEEEeecccC
Confidence 99999999999999 999999999999999999999999874
No 11
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B
Probab=100.00 E-value=6.7e-49 Score=374.41 Aligned_cols=208 Identities=26% Similarity=0.379 Sum_probs=163.2
Q ss_pred cceeeeeEEEeeeeeEECCC---C-------cEEEEEEEEeCCCeEEEEeeccCC--CCeeEEE-Eeeeeecc---ccC-
Q 023905 57 EAGIGVMGTKLGMMSYFEPD---G-------TVVPVTVVGFREGNIVTQVKTEAT--DGYDAVQ-IGYRRVRD---KKL- 119 (275)
Q Consensus 57 ~~r~Glig~KiGMt~if~~~---G-------~~vpvTVl~~~~~~vV~~vkt~e~--dGY~Avq-vG~g~~~~---k~~- 119 (275)
+..+|++|+|.|||+|..++ | ...||||||.+ |.+|+.+.--.. .|-.++- |=+.+.++ +++
T Consensus 41 ~~L~aF~GYKAGMTHiv~~~drpgS~~~~kEv~~~VTivEtP-Pm~vvgi~gY~~tp~Gl~~~~~vwa~~l~~e~~Rr~~ 119 (391)
T 4a17_B 41 PHLTAFTGFKAGMTHILREVDRSGSRHNKKEVVEAVTVIECP-PMTIVGVVGYIDTPRGLRALTTVWAKTIDNNTKKRFY 119 (391)
T ss_dssp CEECEEEEEEEEEEEEEEECCCTTSTTTTSEEEEEEEEEECC-CEEEEEEEEEEEETTEEEEEEEEECSCCCHHHHGGGC
T ss_pred ceEeeeeeeccCCeEEEEEccCCCCCcCCCEeeeeeEEEeCC-CeEEEEEEEEeecCCCceeEEEEcccccCHHHhhhhc
Confidence 46789999999999998442 4 38999999995 688887642222 2322221 11111111 111
Q ss_pred -----------Ch--------h---hcchh---------------hhcCCC-CCceEEEEEecCCC-----Cc---CCCc
Q 023905 120 -----------TK--------P---ELGHL---------------QKSGLI-PMRHLQEFRLQSID-----GF---EAGQ 153 (275)
Q Consensus 120 -----------~K--------p---~~G~f---------------~kagv~-pkr~l~Efrv~~~~-----~~---~~G~ 153 (275)
++ . .+..+ ...++. -|.+|+|++|+..+ +| .+|+
T Consensus 120 knw~~skkkaftk~~kk~~~~~~~~~~~~~~k~~~viRvi~hTqp~l~~l~qKK~~imEiqV~GGsv~~k~~~a~~~lg~ 199 (391)
T 4a17_B 120 KNWANSNKKAFTHHEKNFDQKAQDLLLKRIEKYCSVVRVIAHTNMSKLNLRQKKNHILEIQVNGGKVAEKVAFAKSLLEK 199 (391)
T ss_dssp SCSTTSCCCTTHHHHHTCCHHHHHHHHHHHHHHCSEEEEEEEECGGGSCSSCCCCEEEEEEEECSCHHHHHHHHHHHTTC
T ss_pred ccccccchhhhhhhhhhcchhHHHHHHHHhhhcccEEEEEEeccccccCcCCCCceEEEEEecCCCHHHHHHHHHhhcCC
Confidence 11 0 11111 123443 36899999997643 12 5899
Q ss_pred EEeccccccCCCEEEEEEEeeccceeeeeeeeccCCCC-CCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCeeEEEE
Q 023905 154 KLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGA-MTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIR 232 (275)
Q Consensus 154 ~l~~~~~F~~Gq~VDV~g~SKGKGF~GvmKR~gF~g~p-asHGSk~HR~~GSiG~~~~PgRV~kGkkMaG~mG~~~~Tv~ 232 (275)
+|+++++|++||+|||+|+|||||||||||||||+++| +||+ .||++||||+ |+|+|||+|++||||||++++|++
T Consensus 200 ~i~v~~vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~~p~ktH~--~~R~~GsiG~-~~P~rV~~g~~maGqmG~~~rT~~ 276 (391)
T 4a17_B 200 EVKVDSIFAENEMLDVLGVTKGKGFAGVIKRFGVKHLQKKTHR--GYRKVGCIGA-WHPSRIRFTVPRAGQLGYHHRTET 276 (391)
T ss_dssp EECHHHHCCTTCEEEEEEECCCCCEECHHHHHCCCCCCTTCSS--CSSSCSCSCC-SSSSSCCTTSCCCEECSCCEEEEE
T ss_pred EEehhHhcCCCCEEEEEEEEeCcccceeeeecccCCCCccccc--CCCCCcccCC-CCCCcccCCCccCCCCCCceEEEe
Confidence 99998899999999999999999999999999999998 9998 6999999999 999999999999999999999999
Q ss_pred ceEEEEEeC------------------------------CCCEEEEeccCCCCCCCeEEEEeceec
Q 023905 233 KLKIVKIDN------------------------------DLRVVMIKGAVPGKPGNLLRVAPAKIV 268 (275)
Q Consensus 233 Nl~V~kId~------------------------------e~nli~VKGsVPG~k~~~V~I~~a~~~ 268 (275)
||+|++||+ ++|||||||||||+++++|.|++|++.
T Consensus 277 NlkI~kI~~~~~~~~a~t~~d~t~k~ItP~GGF~hYG~V~~~~ilvKGsVpG~kk~~v~lr~s~~~ 342 (391)
T 4a17_B 277 NKKVYRVGKGDDASNASTAGDVTDKAITPLGGFPHYGVVKNDFIMIKGCCVGPKKRVLTLRKSIIP 342 (391)
T ss_dssp EEEEEEEECTTCSSTTCCTTTCSCCCSSCTTCBTTTBCCCSCEEEEESCCSSSTTCEEEEEECSSC
T ss_pred ccEEEEEcCCccccccccccccccccccCCCcccccceecCCEEEEeccccCCCCcEEEEeecccC
Confidence 999999998 999999999999999999999999864
No 12
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=26.95 E-value=52 Score=25.02 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=33.7
Q ss_pred eeEECCCCcEEEEEEEEeC----CCeEEEEeeccCCCCeeEEEEeeeeec
Q 023905 70 MSYFEPDGTVVPVTVVGFR----EGNIVTQVKTEATDGYDAVQIGYRRVR 115 (275)
Q Consensus 70 t~if~~~G~~vpvTVl~~~----~~~vV~~vkt~e~dGY~AvqvG~g~~~ 115 (275)
.++.|++|+.+|=.-++++ ..-..++.++.+.+|+.++-.|.|+..
T Consensus 5 v~V~d~~GkPV~gA~Vefe~yNyae~~~~~~~~TD~~G~~s~~~G~Gd~~ 54 (82)
T 3e8v_A 5 VLVTDAEGQPVADATVEFKVYNYAEFYTVATKHTDRSGHASLTAGKGDML 54 (82)
T ss_dssp EEEECTTSCBCTTCEEEEEEEETTEEEEEEEEECCTTSEEEEECCSEEEE
T ss_pred EEEEcCCCCCCCCCEEEEEEEEchheeEEEEEEECCCceEEEEEcCCceE
Confidence 3577888888776666662 113455567788999999999999874
No 13
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=23.09 E-value=63 Score=26.55 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=24.2
Q ss_pred EEEeeeeeEE-CCCCcEEEEEEEEeCCCeEEEE
Q 023905 64 GTKLGMMSYF-EPDGTVVPVTVVGFREGNIVTQ 95 (275)
Q Consensus 64 g~KiGMt~if-~~~G~~vpvTVl~~~~~~vV~~ 95 (275)
-.+.||.=.+ +++|..+|++|+++.+..|+..
T Consensus 84 ~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD 116 (158)
T 3cgm_A 84 EVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVD 116 (158)
T ss_dssp CCCTTCEEEEEETTTEEEEEEEEEEETTEEEEE
T ss_pred CCccCCEEEEECCCCCEEEEEEEEECCCEEEEe
Confidence 4567877444 4679999999999987676665
No 14
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=22.97 E-value=79 Score=26.46 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=24.4
Q ss_pred EEeeeeeEE-CCCCcEEEEEEEEeCCCeEEEE
Q 023905 65 TKLGMMSYF-EPDGTVVPVTVVGFREGNIVTQ 95 (275)
Q Consensus 65 ~KiGMt~if-~~~G~~vpvTVl~~~~~~vV~~ 95 (275)
.+.||.=.+ +++|..+|+||+++.+..|+..
T Consensus 113 ~~~G~~~~~~~~~G~~~~~~V~~v~~~~V~vD 144 (169)
T 4dt4_A 113 PEIGAIMLFTAMDGSEMPGVIREINGDSITVD 144 (169)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEEETTEEEEE
T ss_pred CCCCcEEEEECCCCCEEEEEEEEEcCCEEEEe
Confidence 367887666 4689999999999987676665
Done!