RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023905
(275 letters)
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 170 bits (431), Expect = 3e-53
Identities = 97/207 (46%), Positives = 129/207 (62%), Gaps = 3/207 (1%)
Query: 60 IGVMGTKLGMMSYFEPDGTVVPVTVVGFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKL 119
IG++G K+GM F DG +PVTV+ E N VTQVK A DGY A+Q+ + ++
Sbjct: 2 IGLVGKKVGMTRIFTEDGVSIPVTVIEV-EANRVTQVKDLANDGYRAIQVTTGAKKANRV 60
Query: 120 TKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQ 179
TKPE GH K+G+ R L EFRL + F GQ E+F + VDV+GT+ GKGF
Sbjct: 61 TKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQS-ISVELFADVKKVDVTGTSKGKGFA 119
Query: 180 GGIKRHNFRRGAMTHG-SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVK 238
G +KR NFR THG S SHR GSIG TPG+V+KGKKM G+MG ++ L +V+
Sbjct: 120 GTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVR 179
Query: 239 IDNDLRVVMIKGAVPGKPGNLLRVAPA 265
+D + ++++KGAVPG G+ L V PA
Sbjct: 180 VDAERNLLLVKGAVPGATGSDLIVKPA 206
>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 205
Score = 162 bits (410), Expect = 4e-50
Identities = 88/206 (42%), Positives = 125/206 (60%), Gaps = 8/206 (3%)
Query: 61 GVMGTKLGMMSYFEPDGTVVPVTVVGFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLT 120
G++GTK+GM ++ + +PVTVV + Q KT TDGY+AVQIGY ++K+
Sbjct: 3 GILGTKIGMTQIWK-NDRAIPVTVVLA-GPCPIVQRKTAQTDGYEAVQIGYAPKAERKVN 60
Query: 121 KPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQG 180
KP GH K+G+ P R L+EFR + DG +IF EG+ +D +GT+ GKG QG
Sbjct: 61 KPMQGHFAKAGVAPTRILREFRGFAPDGDSVNV-----DIFAEGEKIDATGTSKGKGTQG 115
Query: 181 GIKRHNFRRGAMTHGSKSHRQ-LGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
+KR NF G +HGSK + GSIG TPGRVYKGK+M G MG ++ L++V+I
Sbjct: 116 VMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVEI 175
Query: 240 DNDLRVVMIKGAVPGKPGNLLRVAPA 265
++++KGA+PG G L+ + A
Sbjct: 176 RAGENLILVKGAIPGANGGLVVLRSA 201
>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus
thermophilus [TaxId: 274]}
Length = 205
Score = 151 bits (382), Expect = 6e-46
Identities = 85/207 (41%), Positives = 118/207 (57%), Gaps = 8/207 (3%)
Query: 61 GVMGTKLGMMSYFEPDGTVVPVTVVGFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLT 120
G++G K+GM F D VPVTV+ V Q +T DGY AVQ+G+ K++
Sbjct: 3 GILGVKVGMTRIFR-DDRAVPVTVILA-GPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVN 60
Query: 121 KPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQG 180
+P GH K+G+ P+R L+E R + + EIF G+ VDV+GT+ G+GF G
Sbjct: 61 RPLKGHFAKAGVEPVRILREIRDFNPE-----GDTVTVEIFKPGERVDVTGTSKGRGFAG 115
Query: 181 GIKRHNFRRGAMTHGS-KSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKI 239
+KR NF G +HG+ K HR GSIG TPGRVYKGKKM G G + L++V +
Sbjct: 116 VMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDV 175
Query: 240 DNDLRVVMIKGAVPGKPGNLLRVAPAK 266
+ ++++KGAVPG G L+ V K
Sbjct: 176 IPEENLLLVKGAVPGPNGGLVIVRETK 202
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 126 bits (317), Expect = 5e-35
Identities = 50/282 (17%), Positives = 78/282 (27%), Gaps = 72/282 (25%)
Query: 61 GVMGTKLGMMSYFEPDG----------TVVPVTVVGFREGNIVTQVKTEATDGYDAVQIG 110
G G K GM + VPVTV+ ++ Y +
Sbjct: 40 GFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIET-PPMRAVALRAYEDTPYGQRPLT 98
Query: 111 YRRVRD-----KKLTKPELGHLQKSGLIPMRHLQEFR----------------------- 142
+ + H + +R E
Sbjct: 99 EVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKK 158
Query: 143 -----------------LQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRH 185
++D E G + A +IF G+ DV+G T GKG QG +KR
Sbjct: 159 PDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRW 218
Query: 186 NFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLR- 244
++ H + R+ P RV G+ G R +++ I
Sbjct: 219 GVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEP 278
Query: 245 ---------------VVMIKGAVPGKPGNLLRVAPAKIVGKN 271
++KG+VPG L+R PA
Sbjct: 279 TVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAVRPNDQ 320
>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 27.0 bits (59), Expect = 2.3
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 205 IGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVM 247
IG G G V++G M I+ K D+ +
Sbjct: 15 IGEGQF-GDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFL 56
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor
5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId:
2190]}
Length = 73
Score = 25.1 bits (55), Expect = 2.9
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 220 MPGRMGGTTRKIRKLKIVKIDNDLRVVM-IKGAVPGKPGNLLRVAPAKIVGKNIPKN 275
MPG ++ + V ID ++ I + PGK G A A++VG I +
Sbjct: 4 MPGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGG----AKARVVGIGIFEK 56
>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 69
Score = 24.8 bits (54), Expect = 3.7
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 130 SGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRR 189
S + M QE+ G L GD+V+++ + G
Sbjct: 2 SHMPKMEVFQEYYGIPPPPGAFGPFLRLNP----GDIVELTKAEAEHNWWEGRNTATNEV 57
Query: 190 G 190
G
Sbjct: 58 G 58
>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 322
Score = 26.3 bits (57), Expect = 4.3
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 205 IGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVV 246
+G G G+V+ +K+ G G ++ LK I +
Sbjct: 32 LGTGAY-GKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTT 72
>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET
{Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 26.3 bits (57), Expect = 4.4
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 205 IGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVM 247
IG G G VY G + ++ L + ++ +
Sbjct: 35 IGRGHF-GCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFL 76
>d3d37a1 b.106.1.1 (A:6-178) Baseplate protein gpP {Neisseria
meningitidis [TaxId: 487]}
Length = 173
Score = 25.3 bits (55), Expect = 7.4
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 68 GMMSYFEPDGTVV 80
G+ + EPDGT+V
Sbjct: 158 GLHPWLEPDGTLV 170
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta
chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]}
Length = 238
Score = 25.0 bits (54), Expect = 9.6
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 8/29 (27%)
Query: 13 PPSLSLKCNFPFRPTRKASILASPKQPLI 41
PP+ + P K S+L SPK LI
Sbjct: 15 PPAYA--------PGYKTSVLRSPKNALI 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.404
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,030,141
Number of extensions: 49294
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 19
Length of query: 275
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,254,276
Effective search space: 239566716
Effective search space used: 239566716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)